Query 018917
Match_columns 349
No_of_seqs 132 out of 404
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 08:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018917.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018917hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 41.4 0.6 4.4E-05 33.0 -3.5 48 227-277 9-56 (59)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 40.8 8 0.00059 30.3 2.9 29 197-226 17-45 (118)
3 d1f54a_ a.39.1.5 (A:) Calmodul 37.7 15 0.0011 25.1 3.7 40 164-215 2-42 (77)
4 d1oqya2 a.5.2.1 (A:317-360) DN 37.1 2.1 0.00015 28.4 -1.0 19 209-227 11-31 (44)
5 d2fr5a1 c.97.1.1 (A:11-146) mo 32.8 10 0.00075 29.9 2.3 40 207-248 94-133 (136)
6 d1uwza_ c.97.1.1 (A:) mono-dom 30.7 15 0.0011 28.6 3.0 40 207-247 91-130 (130)
7 d2g7ja1 d.198.5.1 (A:1-112) Pu 28.0 12 0.0009 28.5 1.9 18 200-217 3-20 (112)
8 d1vjna_ d.157.1.4 (A:) Hypothe 27.4 48 0.0035 26.9 5.9 44 1-49 141-184 (209)
9 d2ihoa2 d.3.1.18 (A:156-293) A 24.3 3.8 0.00028 32.6 -1.8 36 16-51 31-71 (138)
10 d1jjcb2 a.6.1.1 (B:400-474) Do 20.6 25 0.0018 24.6 2.3 23 192-215 13-35 (75)
11 d1sfsa_ c.1.8.8 (A:) Unnamed h 20.2 23 0.0016 30.2 2.3 19 208-226 84-102 (213)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.42 E-value=0.6 Score=32.95 Aligned_cols=48 Identities=13% Similarity=0.342 Sum_probs=28.9
Q ss_pred CcchhhHHHHhccccccccCCCChhhhccccCCccceeeEEEeecCceeee
Q 018917 227 GLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMA 277 (349)
Q Consensus 227 g~~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V~~~SDvFv~ 277 (349)
.+..+.-|+.|||++ +++.+-+ -|....++..+|+|=..-..-+.|-|
T Consensus 9 ~Ee~i~~LkeMFP~~-D~~vI~~--VL~a~~G~vd~aid~LL~Msd~~~gp 56 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNM-DQEVIRS--VLEAQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp CHHHHHHHHHHCSSS-CHHHHHH--HHTTTTTCHHHHHHHHHHSSCCCCSC
T ss_pred cHHHHHHHHHHCCCC-CHHHHHH--HHHHcCCCHHHHHHHHHhcCCCCcCC
Confidence 466789999999996 3333211 23445566667776555554444444
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=40.83 E-value=8 Score=30.31 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEeecC
Q 018917 197 KCPLTPNETALILQALSIPTNTNIYLAAGD 226 (349)
Q Consensus 197 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g~ 226 (349)
+|||||||+...|+.|--+.+. .||..+.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999999765544 5666544
No 3
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.65 E-value=15 Score=25.11 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=21.3
Q ss_pred CCCChhHHHHHHHH-hcCCCCCCcchhhhhhcCCCCCCCHHHHHHHHHHcCCC
Q 018917 164 QGLSPTSMQAIEAA-RGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIP 215 (349)
Q Consensus 164 ~g~~~~e~~~l~~~-R~~~~~w~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~ 215 (349)
+++++++.++++.. +..- +..-++ ++++|...+|+.+|+.
T Consensus 2 ~~lt~eqi~el~~~F~~~D-----------~d~~G~-I~~~el~~~l~~~g~~ 42 (77)
T d1f54a_ 2 SNLTEEQIAEFKEAFALFD-----------KDNNGS-ISSSELATVMRSLGLS 42 (77)
T ss_dssp CCCCHHHHHHHHHHHHHTC-----------TTCSSE-EEHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHHc-----------CCCCCe-EChHHHHHHHHHhCCC
Confidence 36778777766532 2111 111222 6666666666666665
No 4
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.13 E-value=2.1 Score=28.37 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=15.5
Q ss_pred HHHcCCCCCc--eEEEeecCC
Q 018917 209 LQALSIPTNT--NIYLAAGDG 227 (349)
Q Consensus 209 L~alGf~~~T--~IYlA~g~g 227 (349)
|.+|||+++. ..|+|-.+.
T Consensus 11 L~~LGF~r~~viqay~ACdKN 31 (44)
T d1oqya2 11 LKALGFPESLVIQAYFACEKN 31 (44)
T ss_dssp HHHHTCCSHHHHHHTSSSSSC
T ss_pred HHHcCCCHHHHHHHHHHhCcC
Confidence 7899999998 468887764
No 5
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.76 E-value=10 Score=29.87 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=32.2
Q ss_pred HHHHHcCCCCCceEEEeecCCcchhhHHHHhccccccccCCC
Q 018917 207 LILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALR 248 (349)
Q Consensus 207 l~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L~ 248 (349)
-+|..+ ..++.||+...+|+.....|+++.|.-+++++|=
T Consensus 94 Q~l~E~--~~~~~i~~~~~~~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HHHHHT--CSSCEEEEECTTSCEEEEEHHHHSTTCCCGGGGT
T ss_pred HHHHhh--CCCceEEEECCCCCEEEeEHHHhCcCCCChHHhC
Confidence 455554 5789999998888777778999999999888764
No 6
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=30.74 E-value=15 Score=28.61 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHcCCCCCceEEEeecCCcchhhHHHHhccccccccCC
Q 018917 207 LILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 247 (349)
Q Consensus 207 l~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L 247 (349)
-+|..++ +.++.||+...+|+.....|+++.|.=+++++|
T Consensus 91 Q~l~E~~-~~~~~i~l~~~~g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 91 QVISELC-TKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHHS-CTTCEEEEECSSSCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCCCCcccC
Confidence 3455553 468999999999765445799999998888876
No 7
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=27.97 E-value=12 Score=28.55 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 018917 200 LTPNETALILQALSIPTN 217 (349)
Q Consensus 200 LtPeEvgl~L~alGf~~~ 217 (349)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999854
No 8
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=27.36 E-value=48 Score=26.88 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=29.9
Q ss_pred CchhhHHHHHHHhcceEEccccCcccccCCCCCCCccccHHHHHHhccC
Q 018917 1 MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDG 49 (349)
Q Consensus 1 ~~IcdaV~vArlLNATLVlP~l~~~s~w~D~s~F~dIfD~dhFI~~L~~ 49 (349)
|.--+|+-+|+.|++-.|||-= ||.....| ++=.+|.|++.++.
T Consensus 141 m~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 141 IGPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp CCHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred cCHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhh
Confidence 3446899999999999999952 22222222 34557889888764
No 9
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=24.26 E-value=3.8 Score=32.61 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=28.7
Q ss_pred eEEccccCcccccCCC-----CCCCccccHHHHHHhccCce
Q 018917 16 TLVLPKFEVAAYWNES-----SDFADIFEADYFIQHMDGFV 51 (349)
Q Consensus 16 TLVlP~l~~~s~w~D~-----s~F~dIfD~dhFI~~L~~dV 51 (349)
-||||...-++.|+++ ..=+.|||-|.|--..|.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 4899999999999873 24478999999987776543
No 10
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=20.62 E-value=25 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=19.8
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCC
Q 018917 192 WRRRGKCPLTPNETALILQALSIP 215 (349)
Q Consensus 192 ~R~~G~CPLtPeEvgl~L~alGf~ 215 (349)
.+..|.. ++++|+..+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 3566766 9999999999999996
No 11
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.20 E-value=23 Score=30.17 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=15.7
Q ss_pred HHHHcCCCCCceEEEeecC
Q 018917 208 ILQALSIPTNTNIYLAAGD 226 (349)
Q Consensus 208 ~L~alGf~~~T~IYlA~g~ 226 (349)
.=++|||++.|.||++-=.
T Consensus 84 ~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 84 HARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHTTCCSSCEEEEECCT
T ss_pred HHHHcCCCCCCEEEEEecc
Confidence 4478999999999988644
Done!