BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018918
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GT5|A Chain A, Crystal Structure Of An N-Acetylglucosamine 2-Epimerase
Family Protein From Xylella Fastidiosa
Length = 402
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 268 LCDEPKGLKTNMCMSLLYLPFAVANALTAKLNDGDPLVDEFWVLLGYCIFTA--GLYLHF 325
LCD+ TN C L ++ A + L + +DE W LL + A GLY
Sbjct: 100 LCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDAEYGLYKDE 159
Query: 326 ATS 328
A +
Sbjct: 160 ADA 162
>pdb|4DLF|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group P3221
pdb|4DLM|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group P212121
pdb|4DNM|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Hepes, Space Group P3221
pdb|4DO7|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group C2
pdb|4DO7|B Chain B, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group C2
Length = 303
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 214 RALAMLYPFVVLLVGVLAWDYLSPAEIIRKYPHFVVLGTGLAFGFLVGRMILAHL----C 269
R A YP++ +GVLA DYL A + H LG +A GR A L C
Sbjct: 14 RYRAADYPWIGAGMGVLARDYLPDA--LHPLMHAQALGASIAVQARAGRDETAFLLELAC 71
Query: 270 DEPK 273
DE +
Sbjct: 72 DEAR 75
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 143 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 189
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 143 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 189
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 143 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 189
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 143 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 189
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 143 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 189
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 143 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 189
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.144 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,437,082
Number of Sequences: 62578
Number of extensions: 433656
Number of successful extensions: 842
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 8
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)