Query 018918
Match_columns 349
No_of_seqs 149 out of 632
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bn5_A PSI; nuclear protein, s 16.8 41 0.0014 21.0 0.7 11 113-123 4-14 (33)
2 3h90_A Ferrous-iron efflux pum 14.5 1E+02 0.0036 27.7 3.2 27 59-85 129-155 (283)
3 3cx5_C Cytochrome B-C1 complex 11.0 3.1E+02 0.011 26.4 5.4 43 12-60 230-288 (385)
4 1pp9_C Cytochrome B; cytochrom 10.3 3.4E+02 0.012 26.1 5.4 43 12-60 229-287 (379)
5 1vf5_B Subunit IV; photosynthe 9.0 3.4E+02 0.012 22.7 4.4 38 16-59 45-93 (160)
6 1kpt_A KP4 toxin; killer toxin 8.2 95 0.0033 24.5 0.5 26 51-81 54-80 (105)
7 2w0c_T Protein P6, protein VI; 7.5 2.3E+02 0.0079 21.8 2.4 29 39-73 9-38 (127)
8 3ul0_C Nuclear CAP-binding pro 6.3 64 0.0022 18.6 -1.0 15 55-69 10-24 (26)
9 2jvw_A Uncharacterized protein 5.9 1.6E+02 0.0054 22.4 0.6 21 323-346 26-46 (88)
10 1fll_X B-cell surface antigen 5.8 1.2E+02 0.004 17.8 -0.1 8 57-64 19-26 (26)
No 1
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=16.75 E-value=41 Score=21.01 Aligned_cols=11 Identities=27% Similarity=1.093 Sum_probs=9.3
Q ss_pred HHHHHhhhhcc
Q 018918 113 FGATWEHYFTN 123 (349)
Q Consensus 113 y~~~WeeY~TG 123 (349)
|.++|-||++.
T Consensus 4 YSaQW~eYYrs 14 (33)
T 2bn5_A 4 YSAQWAEYYRS 14 (33)
T ss_dssp THHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 67899999875
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=14.54 E-value=1e+02 Score=27.71 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.5
Q ss_pred hHHHHhhCCCCCccchhhchhhhHHHH
Q 018918 59 GKQARRTNSSSPLGELFDHGCDALACA 85 (349)
Q Consensus 59 GkqARrt~~ssplG~lfDhg~D~~~~~ 85 (349)
.+.+||+++..-.++..||-.|.++..
T Consensus 129 ~~~~~~~~s~~l~a~~~h~~~D~~~s~ 155 (283)
T 3h90_A 129 RWVVRRTQSQAVRADMLHYQSDVMMNG 155 (283)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 577899998888888999999987665
No 3
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=10.99 E-value=3.1e+02 Score=26.44 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC----------------CCCchHHHHHHHHHHHHHHhhhcchH
Q 018918 12 LTGFIFLVTSAVIGYIYSPCLDT----------------APPRWVHFAHGLLLFLYQTFDAVDGK 60 (349)
Q Consensus 12 l~G~~~~~~~~~~~~~y~p~~~~----------------~~P~w~~~~~a~~~f~y~~lD~~DGk 60 (349)
+.|++..+.....+..+.|+.-+ ..|.|- + +|.|..++.+..|
T Consensus 230 l~g~~~~l~~l~~l~~~~P~~l~dp~nf~pAnPl~TP~hI~PeWY-F-----Lf~YaiLRsiPnK 288 (385)
T 3cx5_C 230 LVTVFLFMLILALFVFYSPNTLGHPDNYIPGNPLVTPASIVPEWY-L-----LPFYAILRSIPDK 288 (385)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTSCGGGGSBCCTTCCCTTCCCCGG-G-----HHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHHhCccccCChhhcCcCCcccCCCCCCCccH-H-----HHHHHHHHhcccc
Confidence 45666555555555566665322 178993 3 6789999988754
No 4
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=10.29 E-value=3.4e+02 Score=26.07 Aligned_cols=43 Identities=26% Similarity=0.619 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC----------------CCCchHHHHHHHHHHHHHHhhhcchH
Q 018918 12 LTGFIFLVTSAVIGYIYSPCLDT----------------APPRWVHFAHGLLLFLYQTFDAVDGK 60 (349)
Q Consensus 12 l~G~~~~~~~~~~~~~y~p~~~~----------------~~P~w~~~~~a~~~f~y~~lD~~DGk 60 (349)
+.|++..+..+..+..+.|+.-+ ..|.|- + ++.|..++.+..|
T Consensus 229 l~g~~~~l~~l~~l~~~~P~~l~dp~nf~pAnPl~TP~hI~PeWY-F-----Lf~YaiLRsiPnK 287 (379)
T 1pp9_C 229 ILGALLLILALMLLVLFAPDLLGDPDNYTPANPLNTPPHIKPEWY-F-----LFAYAILRSIPNK 287 (379)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTSCGGGGSBCCTTCCCTTCCCCGG-G-----HHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHHHhCCccccccccccccCcccCCCCCCCCcc-h-----hHHHHHHhcCchh
Confidence 45555555545445555554332 178993 3 6789999998866
No 5
>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.32.1.1 PDB: 2d2c_B* 2e74_B* 2e75_B* 2e76_B* 2zt9_B* 1q90_D*
Probab=8.98 E-value=3.4e+02 Score=22.73 Aligned_cols=38 Identities=13% Similarity=0.285 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCCCCC-----------CCCchHHHHHHHHHHHHHHhhhcch
Q 018918 16 IFLVTSAVIGYIYSPCLDT-----------APPRWVHFAHGLLLFLYQTFDAVDG 59 (349)
Q Consensus 16 ~~~~~~~~~~~~y~p~~~~-----------~~P~w~~~~~a~~~f~y~~lD~~DG 59 (349)
+..+..+..+..+.|+.-+ ..|.|- + +|.|+.+.++..
T Consensus 45 ~l~l~~l~~l~~f~P~~LgdpAnPl~TP~hI~PEWY-F-----Lf~YaILRsiPn 93 (160)
T 1vf5_B 45 MGTFACIVALSVLDPAMVGEPANPFATPLEILPEWY-L-----YPVFQILRSLPN 93 (160)
T ss_dssp HHHHHHHHHHHHHSCCBCCCBCCSSCCCSCCCCTTT-T-----HHHHHHHTTSCS
T ss_pred HHHHHHHHHHHhcCcHHHHhcccccCCCCCCCCcch-h-----hHHHHHHHhcch
Confidence 3333333444566676432 268893 3 578999988763
No 6
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit, alpha/beta family, LEFT-handed crossover, fungal TOXI; 1.75A {Ustilago maydis} SCOP: d.70.1.1
Probab=8.23 E-value=95 Score=24.53 Aligned_cols=26 Identities=35% Similarity=0.645 Sum_probs=18.2
Q ss_pred HHHhhhc-chHHHHhhCCCCCccchhhchhhh
Q 018918 51 YQTFDAV-DGKQARRTNSSSPLGELFDHGCDA 81 (349)
Q Consensus 51 y~~lD~~-DGkqARrt~~ssplG~lfDhg~D~ 81 (349)
||-.+.- +|+|||.. +-+|.||||-.
T Consensus 54 ~Q~t~~~~~g~~~~~~-----~~~L~~hGCk~ 80 (105)
T 1kpt_A 54 VQSTNNCISGTEACRH-----LTNLVNHGCRV 80 (105)
T ss_dssp EESSSCCEEHHHHHHH-----HHHHHHHTCSS
T ss_pred EeCCCCCcCHHHHHHH-----HHHHHhcCccc
Confidence 3444444 78888864 66899999964
No 7
>2w0c_T Protein P6, protein VI; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=7.49 E-value=2.3e+02 Score=21.81 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=19.3
Q ss_pred hHHHH-HHHHHHHHHHhhhcchHHHHhhCCCCCccc
Q 018918 39 WVHFA-HGLLLFLYQTFDAVDGKQARRTNSSSPLGE 73 (349)
Q Consensus 39 w~~~~-~a~~~f~y~~lD~~DGkqARrt~~ssplG~ 73 (349)
.+|++ +|++.+.||--|+ |.+|.+ .|..+
T Consensus 9 fvwilaagvgvwfyqkadn-----aaktat-kpiad 38 (127)
T 2w0c_T 9 FVWILAAGVGVWFYQKADN-----AAKTAT-KPIAD 38 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HSCCCC-CCCSH
T ss_pred hheeeecccEEEEeeecch-----hhhhcc-ccHHH
Confidence 34554 7899999999886 445544 45544
No 8
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=6.25 E-value=64 Score=18.60 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=9.3
Q ss_pred hhcchHHHHhhCCCC
Q 018918 55 DAVDGKQARRTNSSS 69 (349)
Q Consensus 55 D~~DGkqARrt~~ss 69 (349)
|.=||-||.+.+..|
T Consensus 10 dendggq~hkrr~ts 24 (26)
T 3ul0_C 10 DENDGGQPHKRRKTS 24 (26)
T ss_dssp TSCSSCCCSCCCCCC
T ss_pred cccCCCCcccccccc
Confidence 566888875554433
No 9
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=5.87 E-value=1.6e+02 Score=22.44 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhCcceeeecC
Q 018918 323 LHFATSVIHEITTALGIYCFRITR 346 (349)
Q Consensus 323 ~h~~~~Vi~qi~~~L~I~~FsI~~ 346 (349)
-||+. .++.+.++|+||+-.|
T Consensus 26 ~~YGW---~~L~~~i~I~CF~~~P 46 (88)
T 2jvw_A 26 EHYGW---EELSYMVNINCFKKDP 46 (88)
T ss_dssp HHTCH---HHHHHHTTSSSTTSSC
T ss_pred HHhCH---HHHHhhcccccCCCCC
Confidence 35544 5688899999998765
No 10
>1fll_X B-cell surface antigen CD40; TRAF3 with CD40 peptide, TNF signaling, apoptosis; 3.50A {Homo sapiens}
Probab=5.77 E-value=1.2e+02 Score=17.83 Aligned_cols=8 Identities=25% Similarity=0.314 Sum_probs=2.0
Q ss_pred cchHHHHh
Q 018918 57 VDGKQARR 64 (349)
Q Consensus 57 ~DGkqARr 64 (349)
=|||..|.
T Consensus 19 EdGKeSr~ 26 (26)
T 1fll_X 19 EDGXXXXX 26 (26)
T ss_dssp CCC-----
T ss_pred hccccccC
Confidence 47777763
Done!