Query 018918
Match_columns 349
No_of_seqs 149 out of 632
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 08:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018918.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018918hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lr7a1 g.3.11.3 (A:64-88) Dom 9.8 9.3 0.00067 20.8 -2.1 17 54-70 3-22 (26)
2 d1q90d_ f.32.1.1 (D:) Subunit 8.0 3.1E+02 0.023 20.8 5.7 20 36-61 73-92 (156)
3 d2a5yb1 a.4.5.80 (B:386-543) C 6.2 58 0.0042 24.3 0.2 25 51-75 35-59 (158)
4 d2jq4a1 a.28.1.1 (A:1-83) Hypo 6.2 83 0.006 21.0 1.1 24 74-97 28-51 (83)
5 d1xg0b_ d.184.1.1 (B:) Phycoer 6.2 40 0.0029 22.7 -0.7 11 70-80 9-20 (67)
6 d1myna_ g.3.7.4 (A:) Drosomyci 6.0 88 0.0064 18.9 1.0 9 57-65 14-22 (44)
7 d1ip9a_ d.15.2.2 (A:) Bud emer 5.1 1.7E+02 0.013 19.8 2.3 22 328-349 36-57 (85)
8 d1v6ga2 g.39.1.3 (A:42-81) Act 5.0 69 0.005 19.1 -0.0 14 265-278 2-15 (40)
9 d1wiga2 g.39.1.3 (A:33-73) Act 4.8 1.2E+02 0.009 18.1 1.1 14 58-71 26-39 (41)
10 d2choa3 d.92.2.3 (A:5-126) Glu 4.7 1.7E+02 0.012 20.5 2.1 26 323-348 96-121 (122)
No 1
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.82 E-value=9.3 Score=20.83 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=10.6
Q ss_pred hhhcc---hHHHHhhCCCCC
Q 018918 54 FDAVD---GKQARRTNSSSP 70 (349)
Q Consensus 54 lD~~D---GkqARrt~~ssp 70 (349)
.|++| ||+-|..+.+-|
T Consensus 3 cdnvdcgpgk~c~mnrrnkp 22 (26)
T d1lr7a1 3 CENVDCGPGKKCRMNKKNKP 22 (26)
T ss_dssp STTCCCCTTEEEEECTTSCE
T ss_pred ccccccCCCccccccccCCC
Confidence 45555 787776666555
No 2
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.96 E-value=3.1e+02 Score=20.83 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=15.9
Q ss_pred CCchHHHHHHHHHHHHHHhhhcchHH
Q 018918 36 PPRWVHFAHGLLLFLYQTFDAVDGKQ 61 (349)
Q Consensus 36 ~P~w~~~~~a~~~f~y~~lD~~DGkq 61 (349)
.|.|-+ ++.||.|-.+|.|-
T Consensus 73 ~PEWYF------L~~yaiLR~iP~kl 92 (156)
T d1q90d_ 73 LPEWYF------YPVFQILRVVPNKL 92 (156)
T ss_dssp CCCGGG------HHHHHHHHHCSCHH
T ss_pred Ccchhh------HHHHHHHHhCChHH
Confidence 689943 57899999999773
No 3
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=6.22 E-value=58 Score=24.30 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=18.9
Q ss_pred HHHhhhcchHHHHhhCCCCCccchh
Q 018918 51 YQTFDAVDGKQARRTNSSSPLGELF 75 (349)
Q Consensus 51 y~~lD~~DGkqARrt~~ssplG~lf 75 (349)
..-=|++|.+.|.|.+.-|..|.++
T Consensus 35 snee~qlddevadrlkrlskrgall 59 (158)
T d2a5yb1 35 SNEEEQLDDEVADRLKRLSKRGALL 59 (158)
T ss_dssp ----CCCTHHHHHHHHHTTTBSSCS
T ss_pred CChHhhhhHHHHHHHHHHHhccchh
Confidence 3567899999999999999998854
No 4
>d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.21 E-value=83 Score=21.05 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=15.9
Q ss_pred hhhchhhhHHHHHHHHHHHHhhcC
Q 018918 74 LFDHGCDALACAFEAMAFGSTAMC 97 (349)
Q Consensus 74 lfDhg~D~~~~~~~~l~~~~~~~~ 97 (349)
++|.|.||+..+=...-+-..++.
T Consensus 28 f~dlG~DSl~~~~l~~~le~~f~v 51 (83)
T d2jq4a1 28 LYAAGLSSFASVQLMLGIEEAFDI 51 (83)
T ss_dssp GGGGTCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCccHHHHHHHHHHHHHHCC
Confidence 689999999776554444444443
No 5
>d1xg0b_ d.184.1.1 (B:) Phycoerythrin 545 alpha-subunits {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]}
Probab=6.20 E-value=40 Score=22.66 Aligned_cols=11 Identities=55% Similarity=1.328 Sum_probs=4.7
Q ss_pred Cccchhhc-hhh
Q 018918 70 PLGELFDH-GCD 80 (349)
Q Consensus 70 plG~lfDh-g~D 80 (349)
|.=+.||| |||
T Consensus 9 PvItiFDhRGC~ 20 (67)
T d1xg0b_ 9 PVITIFDHRGCS 20 (67)
T ss_dssp EEEEEEECTTCS
T ss_pred CeEEEecccccc
Confidence 33344444 444
No 6
>d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.01 E-value=88 Score=18.93 Aligned_cols=9 Identities=33% Similarity=0.505 Sum_probs=7.3
Q ss_pred cchHHHHhh
Q 018918 57 VDGKQARRT 65 (349)
Q Consensus 57 ~DGkqARrt 65 (349)
.||+|-||.
T Consensus 14 W~~e~CRr~ 22 (44)
T d1myna_ 14 WDNETCRRV 22 (44)
T ss_dssp TTHHHHHHH
T ss_pred eccHHHHHH
Confidence 589998885
No 7
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.15 E-value=1.7e+02 Score=19.78 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=17.6
Q ss_pred HHHHHHHhhhCcceeeecCCCC
Q 018918 328 SVIHEITTALGIYCFRITRKEA 349 (349)
Q Consensus 328 ~Vi~qi~~~L~I~~FsI~~k~~ 349 (349)
++..++++-+++.-|++|+|.+
T Consensus 36 dL~~kI~~rf~~~~~~lkY~De 57 (85)
T d1ip9a_ 36 ELRSKIAPRIDTDNFKLQTKLF 57 (85)
T ss_dssp HHHHHHHHHHTSSCEEEEECCS
T ss_pred HHHHHHHHHhCCCceEEEEEcC
Confidence 4567888888999999998853
No 8
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.98 E-value=69 Score=19.14 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=10.8
Q ss_pred HhhhcCCCCCCCcc
Q 018918 265 LAHLCDEPKGLKTN 278 (349)
Q Consensus 265 vahmtk~~~~~~~~ 278 (349)
++.+||+|||.-|+
T Consensus 2 vC~vCr~pFP~GDR 15 (40)
T d1v6ga2 2 VCAVCRLPFPPGDR 15 (40)
T ss_dssp SCSSSCCCCCSSSC
T ss_pred cccccCCCCCCCCe
Confidence 46689999998655
No 9
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.80 E-value=1.2e+02 Score=18.14 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=11.4
Q ss_pred chHHHHhhCCCCCc
Q 018918 58 DGKQARRTNSSSPL 71 (349)
Q Consensus 58 DGkqARrt~~sspl 71 (349)
|=|||+|+-.++|-
T Consensus 26 ~C~~~~~~E~k~p~ 39 (41)
T d1wiga2 26 ACRQAARTEDSGPS 39 (41)
T ss_dssp THHHHTSSSSCCSC
T ss_pred cccccchhhccCCC
Confidence 45899999998884
No 10
>d2choa3 d.92.2.3 (A:5-126) Glucosaminidase GH84, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=4.75 E-value=1.7e+02 Score=20.45 Aligned_cols=26 Identities=8% Similarity=-0.010 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhhCcceeeecCCC
Q 018918 323 LHFATSVIHEITTALGIYCFRITRKE 348 (349)
Q Consensus 323 ~h~~~~Vi~qi~~~L~I~~FsI~~k~ 348 (349)
+.|+....+|+.+--.|+|..|+-++
T Consensus 96 ~~yg~qTL~QLi~~~~ip~~~I~D~P 121 (122)
T d2choa3 96 TYYALQTFAQLLKDGKLPEVEIKDYP 121 (122)
T ss_dssp HHHHHHHHHHHCBTTEEEEEEEEECC
T ss_pred HHHHHHHHHHHhhCCCccceEEEecC
Confidence 45778888899888899999997654
Done!