Query 018919
Match_columns 349
No_of_seqs 296 out of 2244
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 8.2E-85 1.8E-89 589.7 28.8 337 4-340 1-359 (363)
2 PLN02493 probable peroxisomal 100.0 2.7E-78 5.8E-83 577.9 34.0 344 3-348 2-366 (367)
3 TIGR02708 L_lactate_ox L-lacta 100.0 2.3E-76 5E-81 565.3 35.4 339 2-340 11-364 (367)
4 PRK11197 lldD L-lactate dehydr 100.0 9.3E-76 2E-80 563.6 33.0 334 3-336 2-377 (381)
5 PLN02535 glycolate oxidase 100.0 1.3E-75 2.8E-80 560.2 33.2 341 2-342 3-361 (364)
6 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1E-74 2.2E-79 557.4 34.0 330 4-334 18-383 (383)
7 cd04736 MDH_FMN Mandelate dehy 100.0 1.1E-74 2.3E-79 552.7 33.0 321 8-331 1-361 (361)
8 cd04737 LOX_like_FMN L-Lactate 100.0 1.9E-74 4.1E-79 551.6 33.9 332 3-334 4-351 (351)
9 PF01070 FMN_dh: FMN-dependent 100.0 6.9E-72 1.5E-76 537.4 32.7 322 14-335 1-356 (356)
10 cd02922 FCB2_FMN Flavocytochro 100.0 3.5E-71 7.7E-76 529.3 34.8 325 8-332 1-344 (344)
11 PLN02979 glycolate oxidase 100.0 8.7E-65 1.9E-69 480.8 31.0 297 45-341 43-360 (366)
12 COG1304 idi Isopentenyl diphos 100.0 2.2E-60 4.8E-65 454.6 24.0 329 7-340 1-354 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 2E-58 4.3E-63 436.9 34.6 299 8-331 1-299 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 100.0 8.8E-39 1.9E-43 305.6 27.4 271 39-331 18-326 (326)
15 PRK05437 isopentenyl pyrophosp 100.0 1.2E-38 2.6E-43 307.1 27.6 277 41-338 28-340 (352)
16 TIGR02151 IPP_isom_2 isopenten 100.0 2.2E-37 4.8E-42 296.8 27.5 275 41-336 21-331 (333)
17 PRK05458 guanosine 5'-monophos 100.0 4.7E-30 1E-34 242.9 26.7 253 42-334 6-313 (326)
18 TIGR01306 GMP_reduct_2 guanosi 100.0 3.2E-30 7E-35 243.0 25.0 255 41-335 2-311 (321)
19 TIGR01305 GMP_reduct_1 guanosi 100.0 1.1E-29 2.4E-34 237.4 24.9 255 41-332 8-329 (343)
20 PRK08649 inosine 5-monophospha 100.0 2.2E-27 4.7E-32 229.1 23.9 266 41-336 16-367 (368)
21 cd00381 IMPDH IMPDH: The catal 100.0 5.4E-27 1.2E-31 224.1 23.9 256 41-334 2-321 (325)
22 TIGR01304 IMP_DH_rel_2 IMP deh 100.0 1.6E-27 3.5E-32 229.3 19.9 271 35-335 8-368 (369)
23 cd02808 GltS_FMN Glutamate syn 100.0 3.7E-26 8.1E-31 223.5 27.4 268 59-336 60-391 (392)
24 PF00478 IMPDH: IMP dehydrogen 100.0 1.8E-26 4E-31 219.5 23.7 256 41-333 3-336 (352)
25 PRK06843 inosine 5-monophospha 100.0 2.9E-26 6.4E-31 222.1 24.3 255 41-332 10-381 (404)
26 PRK05096 guanosine 5'-monophos 99.9 9.1E-26 2E-30 211.0 23.1 255 41-332 9-330 (346)
27 cd04739 DHOD_like Dihydroorota 99.9 1.2E-23 2.7E-28 201.3 26.5 238 60-332 1-302 (325)
28 TIGR01037 pyrD_sub1_fam dihydr 99.9 8.9E-24 1.9E-28 200.4 24.2 237 61-332 1-298 (300)
29 PRK07259 dihydroorotate dehydr 99.9 5.4E-23 1.2E-27 195.2 26.8 238 60-332 1-298 (301)
30 PRK07565 dihydroorotate dehydr 99.9 8.4E-23 1.8E-27 196.5 26.0 239 60-333 2-305 (334)
31 PLN02495 oxidoreductase, actin 99.9 6.7E-23 1.4E-27 198.5 25.4 250 57-334 7-337 (385)
32 PTZ00314 inosine-5'-monophosph 99.9 9.1E-23 2E-27 204.7 25.8 142 190-331 266-466 (495)
33 PLN02826 dihydroorotate dehydr 99.9 4.3E-22 9.3E-27 194.6 29.6 267 31-333 46-407 (409)
34 cd04740 DHOD_1B_like Dihydroor 99.9 2.8E-22 6.1E-27 189.8 27.1 236 62-332 1-295 (296)
35 PRK10415 tRNA-dihydrouridine s 99.9 8.8E-23 1.9E-27 195.0 22.7 250 64-335 2-285 (321)
36 COG0167 PyrD Dihydroorotate de 99.9 5.2E-22 1.1E-26 186.1 24.9 175 134-334 107-308 (310)
37 PRK07107 inosine 5-monophospha 99.9 1.7E-22 3.6E-27 202.6 21.3 141 193-333 271-473 (502)
38 PLN02274 inosine-5'-monophosph 99.9 6.3E-22 1.4E-26 198.7 25.0 138 193-332 277-473 (505)
39 COG0042 tRNA-dihydrouridine sy 99.9 3.6E-22 7.8E-27 190.4 22.0 248 65-337 4-288 (323)
40 TIGR01303 IMP_DH_rel_1 IMP deh 99.9 3.4E-22 7.4E-27 199.1 22.7 145 189-333 249-457 (475)
41 TIGR01302 IMP_dehydrog inosine 99.9 3.8E-22 8.3E-27 198.8 22.7 138 193-330 253-449 (450)
42 TIGR00737 nifR3_yhdG putative 99.9 1.4E-21 2.9E-26 187.0 24.5 245 66-332 2-280 (319)
43 PRK02506 dihydroorotate dehydr 99.9 2.2E-21 4.7E-26 184.6 24.7 240 60-332 1-306 (310)
44 PRK10550 tRNA-dihydrouridine s 99.9 1.9E-21 4.2E-26 184.7 23.8 220 72-315 1-258 (312)
45 PRK05567 inosine 5'-monophosph 99.9 1.5E-21 3.3E-26 196.3 24.5 140 193-332 257-455 (486)
46 PRK08318 dihydropyrimidine deh 99.9 2.9E-21 6.4E-26 191.3 25.3 248 59-334 2-320 (420)
47 cd02940 DHPD_FMN Dihydropyrimi 99.9 2.4E-21 5.1E-26 183.7 23.0 214 60-293 1-286 (299)
48 TIGR00742 yjbN tRNA dihydrouri 99.9 2E-21 4.4E-26 184.9 22.4 236 73-334 2-279 (318)
49 PF01645 Glu_synthase: Conserv 99.9 5.7E-21 1.2E-25 183.3 22.4 248 68-324 62-368 (368)
50 PRK05286 dihydroorotate dehydr 99.9 5.4E-20 1.2E-24 177.5 26.2 232 56-322 44-344 (344)
51 cd04741 DHOD_1A_like Dihydroor 99.9 1.3E-19 2.7E-24 171.4 24.2 222 63-318 1-294 (294)
52 PRK07807 inosine 5-monophospha 99.8 1.4E-19 3E-24 180.7 23.2 141 193-333 256-459 (479)
53 PRK11815 tRNA-dihydrouridine s 99.8 1.8E-19 4E-24 173.0 22.9 242 69-334 8-289 (333)
54 cd04738 DHOD_2_like Dihydrooro 99.8 3.4E-19 7.3E-24 170.9 23.7 248 32-313 9-326 (327)
55 PF01207 Dus: Dihydrouridine s 99.8 1.2E-20 2.5E-25 179.5 13.5 240 75-336 1-274 (309)
56 cd02810 DHOD_DHPD_FMN Dihydroo 99.8 4E-18 8.7E-23 160.8 24.2 206 63-293 1-277 (289)
57 KOG2550 IMP dehydrogenase/GMP 99.8 2.5E-19 5.3E-24 169.1 14.5 145 188-332 274-476 (503)
58 TIGR01036 pyrD_sub2 dihydrooro 99.8 3.8E-18 8.3E-23 163.8 22.6 207 61-293 46-322 (335)
59 COG0069 GltB Glutamate synthas 99.8 5.5E-18 1.2E-22 166.0 24.0 257 68-334 163-478 (485)
60 cd02801 DUS_like_FMN Dihydrour 99.8 3.9E-18 8.4E-23 155.5 18.7 199 73-293 1-218 (231)
61 PF01180 DHO_dh: Dihydroorotat 99.8 2.5E-18 5.3E-23 162.8 17.6 223 61-318 2-295 (295)
62 cd02911 arch_FMN Archeal FMN-b 99.8 3.6E-18 7.8E-23 156.0 17.5 188 73-290 1-222 (233)
63 PRK11750 gltB glutamate syntha 99.8 1.8E-17 3.8E-22 179.1 23.3 251 70-329 857-1165(1485)
64 TIGR03151 enACPred_II putative 99.8 2.4E-17 5.3E-22 156.5 21.2 183 64-295 6-197 (307)
65 PF03060 NMO: Nitronate monoox 99.8 9.6E-17 2.1E-21 154.2 21.4 187 63-294 5-225 (330)
66 KOG1436 Dihydroorotate dehydro 99.7 1.9E-16 4.2E-21 145.3 17.8 260 33-332 58-396 (398)
67 KOG2335 tRNA-dihydrouridine sy 99.7 1.7E-16 3.6E-21 149.1 17.8 194 75-292 22-237 (358)
68 TIGR00736 nifR3_rel_arch TIM-b 99.7 8.2E-16 1.8E-20 139.5 16.6 151 123-293 68-225 (231)
69 cd04730 NPD_like 2-Nitropropan 99.6 3.9E-14 8.5E-19 129.6 21.4 187 71-300 2-197 (236)
70 cd04743 NPD_PKS 2-Nitropropane 99.6 2.6E-14 5.6E-19 135.1 19.9 182 71-295 2-209 (320)
71 COG2070 Dioxygenases related t 99.6 1.8E-14 3.9E-19 138.1 16.7 190 67-297 10-222 (336)
72 cd04742 NPD_FabD 2-Nitropropan 99.5 5E-13 1.1E-17 130.5 20.1 213 64-294 8-254 (418)
73 KOG1799 Dihydropyrimidine dehy 99.5 1.5E-14 3.3E-19 134.2 8.4 256 50-335 92-424 (471)
74 TIGR02814 pfaD_fam PfaD family 99.5 7.6E-13 1.6E-17 130.0 20.4 211 64-295 13-260 (444)
75 PF04131 NanE: Putative N-acet 99.5 2.6E-12 5.7E-17 111.6 20.7 167 91-293 2-178 (192)
76 PRK13523 NADPH dehydrogenase N 99.4 1.3E-11 2.8E-16 118.9 19.8 222 62-293 6-310 (337)
77 cd04722 TIM_phosphate_binding 99.4 2.8E-11 6.1E-16 106.1 18.9 184 74-289 1-200 (200)
78 PRK01130 N-acetylmannosamine-6 99.4 3.7E-11 8E-16 109.1 19.3 179 86-293 21-207 (221)
79 cd02803 OYE_like_FMN_family Ol 99.4 2.7E-11 5.8E-16 116.3 18.5 146 139-293 144-316 (327)
80 cd04729 NanE N-acetylmannosami 99.4 1.1E-10 2.5E-15 105.8 19.7 177 89-293 28-211 (219)
81 COG3010 NanE Putative N-acetyl 99.3 1.7E-10 3.7E-15 100.7 19.1 181 79-293 24-214 (229)
82 cd04734 OYE_like_3_FMN Old yel 99.3 2.5E-10 5.5E-15 110.3 21.2 220 62-293 4-320 (343)
83 KOG2333 Uncharacterized conser 99.3 1.6E-10 3.4E-15 111.9 19.1 206 70-295 263-497 (614)
84 cd04727 pdxS PdxS is a subunit 99.3 5.7E-10 1.2E-14 102.7 20.2 167 90-293 17-230 (283)
85 cd02932 OYE_YqiM_FMN Old yello 99.3 5.1E-10 1.1E-14 108.0 20.2 146 139-293 157-325 (336)
86 cd04747 OYE_like_5_FMN Old yel 99.2 2.4E-09 5.2E-14 103.9 21.0 145 139-293 147-333 (361)
87 TIGR00343 pyridoxal 5'-phospha 99.2 3E-09 6.4E-14 98.1 20.2 167 90-293 19-233 (287)
88 TIGR00262 trpA tryptophan synt 99.2 4E-09 8.8E-14 97.8 19.6 147 133-296 21-235 (256)
89 cd02933 OYE_like_FMN Old yello 99.1 1.3E-09 2.8E-14 105.2 15.5 144 139-293 155-319 (338)
90 CHL00200 trpA tryptophan synth 99.1 1E-08 2.2E-13 95.3 20.9 150 133-296 26-239 (263)
91 cd00331 IGPS Indole-3-glycerol 99.1 1.9E-09 4E-14 97.6 15.3 131 135-293 30-206 (217)
92 cd02930 DCR_FMN 2,4-dienoyl-Co 99.1 6.5E-09 1.4E-13 101.0 19.7 223 62-293 4-311 (353)
93 PRK08255 salicylyl-CoA 5-hydro 99.1 1.5E-08 3.2E-13 107.9 22.9 144 140-293 555-722 (765)
94 cd04735 OYE_like_4_FMN Old yel 99.1 1E-09 2.3E-14 106.5 12.3 148 139-293 147-318 (353)
95 cd02929 TMADH_HD_FMN Trimethyl 99.0 2.9E-08 6.2E-13 97.0 20.9 145 139-293 153-324 (370)
96 cd02931 ER_like_FMN Enoate red 99.0 7.3E-09 1.6E-13 101.6 16.7 146 140-293 154-340 (382)
97 PLN02591 tryptophan synthase 99.0 3.8E-08 8.3E-13 90.7 20.1 150 133-296 13-226 (250)
98 cd04733 OYE_like_2_FMN Old yel 99.0 4.9E-09 1.1E-13 101.3 14.6 146 139-293 152-327 (338)
99 PRK00278 trpC indole-3-glycero 99.0 1.4E-08 3E-13 94.5 16.9 130 137-293 71-245 (260)
100 PRK06552 keto-hydroxyglutarate 99.0 2.8E-08 6.1E-13 89.6 17.9 156 126-293 15-188 (213)
101 COG1902 NemA NADH:flavin oxido 99.0 6E-08 1.3E-12 94.0 20.9 145 139-293 152-323 (363)
102 PRK13111 trpA tryptophan synth 99.0 6.1E-08 1.3E-12 89.9 20.0 147 133-297 23-237 (258)
103 PRK04180 pyridoxal biosynthesi 99.0 1.5E-08 3.3E-13 93.7 14.6 122 139-293 86-239 (293)
104 COG0159 TrpA Tryptophan syntha 99.0 2E-07 4.4E-12 85.7 21.5 150 133-297 28-242 (265)
105 PRK09140 2-dehydro-3-deoxy-6-p 99.0 9.5E-08 2.1E-12 85.8 18.7 155 130-293 16-184 (206)
106 PRK10605 N-ethylmaleimide redu 98.9 3.9E-07 8.5E-12 88.7 23.6 142 139-293 162-326 (362)
107 cd04728 ThiG Thiazole synthase 98.9 2.9E-07 6.3E-12 83.5 20.8 194 64-293 2-209 (248)
108 cd04724 Tryptophan_synthase_al 98.9 1.5E-07 3.2E-12 86.8 18.4 147 133-296 11-223 (242)
109 PRK00208 thiG thiazole synthas 98.9 2.5E-07 5.3E-12 84.0 19.2 195 63-293 2-209 (250)
110 cd04731 HisF The cyclase subun 98.9 2.6E-08 5.7E-13 91.7 12.8 76 215-293 152-228 (243)
111 PRK14024 phosphoribosyl isomer 98.9 3.1E-08 6.7E-13 91.2 12.7 76 215-293 149-227 (241)
112 TIGR00735 hisF imidazoleglycer 98.8 1.5E-07 3.2E-12 87.3 16.5 48 244-293 186-234 (254)
113 PF00290 Trp_syntA: Tryptophan 98.8 4E-07 8.7E-12 84.2 19.0 149 133-299 21-237 (259)
114 PRK13125 trpA tryptophan synth 98.8 1.1E-06 2.4E-11 81.0 21.3 152 115-295 67-221 (244)
115 PRK13587 1-(5-phosphoribosyl)- 98.8 2.2E-07 4.7E-12 85.2 16.1 127 140-293 35-226 (234)
116 PF00724 Oxidored_FMN: NADH:fl 98.8 3.2E-07 6.9E-12 88.8 17.9 221 62-293 5-326 (341)
117 cd00452 KDPG_aldolase KDPG and 98.8 1.8E-07 4E-12 82.9 14.8 155 129-293 9-176 (190)
118 COG0107 HisF Imidazoleglycerol 98.8 1.1E-07 2.4E-12 84.8 12.8 150 133-323 27-251 (256)
119 PRK00748 1-(5-phosphoribosyl)- 98.8 6.2E-08 1.3E-12 88.5 11.2 77 215-294 149-226 (233)
120 PRK01033 imidazole glycerol ph 98.8 6.1E-08 1.3E-12 90.2 11.3 76 216-294 156-232 (258)
121 cd04732 HisA HisA. Phosphorib 98.8 2.1E-07 4.4E-12 85.1 14.6 75 216-293 150-224 (234)
122 KOG2334 tRNA-dihydrouridine sy 98.8 1.3E-07 2.7E-12 90.9 13.4 203 68-294 7-248 (477)
123 PF05690 ThiG: Thiazole biosyn 98.8 2.3E-06 5E-11 76.9 20.4 196 64-293 1-209 (247)
124 TIGR00007 phosphoribosylformim 98.8 8.6E-08 1.9E-12 87.5 11.8 77 215-294 148-224 (230)
125 PF00218 IGPS: Indole-3-glycer 98.7 1.9E-07 4.1E-12 86.2 13.0 129 138-293 70-243 (254)
126 PRK00507 deoxyribose-phosphate 98.7 5.4E-07 1.2E-11 81.7 14.8 123 139-289 77-209 (221)
127 PRK13957 indole-3-glycerol-pho 98.7 7.6E-07 1.6E-11 81.6 15.7 128 139-294 64-236 (247)
128 PRK07114 keto-hydroxyglutarate 98.7 1.2E-06 2.6E-11 79.3 16.7 155 127-292 18-192 (222)
129 TIGR03572 WbuZ glycosyl amidat 98.7 4.4E-07 9.5E-12 82.9 14.1 75 215-292 156-231 (232)
130 PF00977 His_biosynth: Histidi 98.7 4.5E-07 9.8E-12 82.8 14.0 128 139-293 32-225 (229)
131 cd04723 HisA_HisF Phosphoribos 98.7 6.5E-07 1.4E-11 82.0 15.0 128 139-294 38-224 (233)
132 PRK02083 imidazole glycerol ph 98.7 4.3E-07 9.4E-12 84.1 13.5 77 215-294 156-233 (253)
133 COG0106 HisA Phosphoribosylfor 98.6 8.9E-07 1.9E-11 80.2 14.6 129 138-293 33-226 (241)
134 TIGR01163 rpe ribulose-phospha 98.6 1.8E-06 3.9E-11 77.3 16.7 134 133-292 8-197 (210)
135 PRK13585 1-(5-phosphoribosyl)- 98.6 4.1E-07 8.9E-12 83.5 12.6 76 215-293 152-227 (241)
136 PRK07455 keto-hydroxyglutarate 98.6 1.1E-06 2.5E-11 77.7 14.8 88 196-292 97-184 (187)
137 TIGR01182 eda Entner-Doudoroff 98.6 1.1E-06 2.3E-11 78.6 14.6 116 127-287 11-127 (204)
138 TIGR03128 RuMP_HxlA 3-hexulose 98.6 5.3E-06 1.1E-10 74.3 19.0 170 87-293 11-191 (206)
139 PRK07695 transcriptional regul 98.6 1.1E-06 2.4E-11 78.6 13.9 111 196-316 86-199 (201)
140 COG0134 TrpC Indole-3-glycerol 98.6 6.2E-07 1.3E-11 82.1 12.0 125 139-293 69-241 (254)
141 PRK14114 1-(5-phosphoribosyl)- 98.6 2.2E-06 4.7E-11 78.9 15.3 127 139-293 33-228 (241)
142 PRK08883 ribulose-phosphate 3- 98.5 1.2E-05 2.6E-10 73.0 18.6 135 133-292 9-199 (220)
143 PRK06015 keto-hydroxyglutarate 98.5 4E-06 8.7E-11 74.7 14.8 116 127-287 7-123 (201)
144 PRK00043 thiE thiamine-phospha 98.5 3.9E-06 8.5E-11 75.2 14.8 80 212-293 111-193 (212)
145 cd00945 Aldolase_Class_I Class 98.5 9.1E-06 2E-10 71.6 16.2 172 87-288 12-201 (201)
146 TIGR00126 deoC deoxyribose-pho 98.5 3.7E-06 8E-11 75.7 13.6 168 91-288 21-204 (211)
147 cd04726 KGPDC_HPS 3-Keto-L-gul 98.5 1.3E-05 2.8E-10 71.4 17.1 168 87-292 12-190 (202)
148 TIGR01182 eda Entner-Doudoroff 98.5 7.5E-06 1.6E-10 73.2 15.3 159 87-293 19-181 (204)
149 PRK13802 bifunctional indole-3 98.4 4.2E-06 9.2E-11 87.3 15.1 128 139-293 73-245 (695)
150 PRK07028 bifunctional hexulose 98.4 1.5E-05 3.2E-10 79.6 18.5 173 86-293 14-195 (430)
151 CHL00162 thiG thiamin biosynth 98.4 2.4E-05 5.1E-10 71.2 17.9 196 62-293 7-223 (267)
152 PLN02460 indole-3-glycerol-pho 98.4 2.4E-06 5.2E-11 81.4 12.0 128 139-293 142-322 (338)
153 PRK11840 bifunctional sulfur c 98.4 4.5E-05 9.7E-10 72.2 20.1 195 62-293 74-283 (326)
154 PRK09427 bifunctional indole-3 98.4 3.6E-06 7.8E-11 84.0 13.2 128 193-330 99-271 (454)
155 TIGR00734 hisAF_rel hisA/hisF 98.4 5.8E-06 1.3E-10 75.1 13.5 49 244-294 171-219 (221)
156 TIGR01304 IMP_DH_rel_2 IMP deh 98.4 2.1E-06 4.6E-11 83.4 11.2 95 189-289 117-217 (369)
157 PF01081 Aldolase: KDPG and KH 98.4 7.5E-06 1.6E-10 72.8 13.6 115 129-288 13-128 (196)
158 TIGR00875 fsa_talC_mipB fructo 98.4 8.5E-05 1.9E-09 67.0 20.6 173 89-296 8-193 (213)
159 PRK04128 1-(5-phosphoribosyl)- 98.4 1.4E-05 3E-10 73.0 15.2 101 193-294 62-217 (228)
160 cd00959 DeoC 2-deoxyribose-5-p 98.4 8.9E-06 1.9E-10 72.9 13.7 122 136-286 69-201 (203)
161 COG0800 Eda 2-keto-3-deoxy-6-p 98.3 1.3E-05 2.9E-10 71.3 13.6 152 132-292 21-185 (211)
162 PRK05718 keto-hydroxyglutarate 98.3 2.4E-05 5.1E-10 70.5 15.1 117 126-287 17-134 (212)
163 PLN02334 ribulose-phosphate 3- 98.3 4.6E-05 1E-09 69.6 17.3 186 92-318 24-226 (229)
164 cd00958 DhnA Class I fructose- 98.3 3.9E-05 8.5E-10 70.1 16.5 124 134-293 74-219 (235)
165 cd04731 HisF The cyclase subun 98.3 6.4E-06 1.4E-10 75.8 11.2 76 215-293 30-105 (243)
166 TIGR01919 hisA-trpF 1-(5-phosp 98.3 2.7E-05 5.8E-10 71.8 14.8 99 193-293 63-230 (243)
167 PRK07226 fructose-bisphosphate 98.3 3.4E-05 7.3E-10 72.2 15.6 120 138-293 95-236 (267)
168 PLN02411 12-oxophytodienoate r 98.3 2.7E-05 5.9E-10 76.6 15.7 144 139-293 168-347 (391)
169 PF04481 DUF561: Protein of un 98.3 4.6E-05 1E-09 67.6 14.9 121 134-292 25-218 (242)
170 PRK02083 imidazole glycerol ph 98.2 1.1E-05 2.4E-10 74.8 11.6 76 215-293 33-108 (253)
171 KOG0399 Glutamate synthase [Am 98.2 4.2E-05 9E-10 81.5 16.7 139 193-332 1082-1269(2142)
172 COG0274 DeoC Deoxyribose-phosp 98.2 1.7E-05 3.6E-10 71.1 12.0 93 193-289 112-213 (228)
173 cd00956 Transaldolase_FSA Tran 98.2 0.00018 3.9E-09 64.9 18.9 149 115-297 44-194 (211)
174 TIGR00735 hisF imidazoleglycer 98.2 1.5E-05 3.2E-10 74.0 11.9 77 214-293 31-108 (254)
175 PRK08649 inosine 5-monophospha 98.2 7.2E-06 1.6E-10 79.8 10.2 97 189-289 116-216 (368)
176 PLN02446 (5-phosphoribosyl)-5- 98.2 2.8E-05 6.1E-10 71.9 13.3 123 139-292 46-242 (262)
177 PRK13586 1-(5-phosphoribosyl)- 98.2 4.7E-05 1E-09 69.7 14.7 127 138-293 32-223 (232)
178 PRK06015 keto-hydroxyglutarate 98.2 8.5E-05 1.8E-09 66.3 15.9 157 87-292 15-176 (201)
179 PRK05848 nicotinate-nucleotide 98.2 1.8E-05 3.8E-10 74.0 12.0 88 193-292 169-261 (273)
180 PRK01362 putative translaldola 98.2 0.00048 1E-08 62.1 20.6 146 116-296 45-193 (214)
181 PRK04302 triosephosphate isome 98.2 0.00014 3.1E-09 66.0 17.3 96 195-293 106-207 (223)
182 cd00429 RPE Ribulose-5-phospha 98.2 0.00012 2.5E-09 65.5 16.5 46 247-293 151-199 (211)
183 PRK06806 fructose-bisphosphate 98.2 0.0013 2.7E-08 62.0 23.9 107 213-323 153-277 (281)
184 COG2022 ThiG Uncharacterized e 98.2 0.00053 1.1E-08 61.6 19.7 199 60-293 5-216 (262)
185 PRK08745 ribulose-phosphate 3- 98.2 0.00028 6.2E-09 64.1 18.6 150 133-313 13-218 (223)
186 PTZ00170 D-ribulose-5-phosphat 98.2 0.00026 5.6E-09 64.6 18.5 152 133-316 16-223 (228)
187 PRK12653 fructose-6-phosphate 98.1 0.00064 1.4E-08 61.6 20.6 172 90-296 9-195 (220)
188 PRK12655 fructose-6-phosphate 98.1 0.00061 1.3E-08 61.7 20.4 186 90-310 9-211 (220)
189 PRK12656 fructose-6-phosphate 98.1 0.00071 1.5E-08 61.4 20.7 172 90-296 9-197 (222)
190 COG0036 Rpe Pentose-5-phosphat 98.1 0.00021 4.5E-09 64.1 16.9 151 133-314 13-217 (220)
191 PF01081 Aldolase: KDPG and KH 98.1 5.6E-05 1.2E-09 67.2 13.2 158 87-293 19-181 (196)
192 PLN02617 imidazole glycerol ph 98.1 5.7E-05 1.2E-09 77.0 14.8 46 246-293 471-517 (538)
193 PF01791 DeoC: DeoC/LacD famil 98.1 2.7E-05 5.8E-10 71.4 11.3 127 139-292 79-234 (236)
194 TIGR01949 AroFGH_arch predicte 98.1 0.00014 3.1E-09 67.6 15.8 118 140-293 94-232 (258)
195 PRK06512 thiamine-phosphate py 98.1 0.00013 2.9E-09 66.2 14.8 95 196-293 100-197 (221)
196 cd00564 TMP_TenI Thiamine mono 98.1 5.6E-05 1.2E-09 66.4 12.1 78 213-293 103-183 (196)
197 COG0214 SNZ1 Pyridoxine biosyn 98.1 8.5E-05 1.9E-09 66.5 12.8 135 139-293 30-242 (296)
198 TIGR01859 fruc_bis_ald_ fructo 98.0 0.0021 4.4E-08 60.6 22.7 108 213-324 153-279 (282)
199 cd00405 PRAI Phosphoribosylant 98.0 0.00042 9.1E-09 62.0 17.2 162 92-293 10-186 (203)
200 PRK00748 1-(5-phosphoribosyl)- 98.0 5.7E-05 1.2E-09 68.9 11.6 75 216-293 34-108 (233)
201 PRK12376 putative translaldola 98.0 0.0016 3.5E-08 59.5 20.7 175 90-296 14-207 (236)
202 PRK13307 bifunctional formalde 98.0 0.00047 1E-08 67.6 18.0 182 71-292 171-362 (391)
203 TIGR02129 hisA_euk phosphoribo 98.0 0.00034 7.4E-09 64.5 15.6 121 139-292 41-236 (253)
204 PRK08005 epimerase; Validated 98.0 0.00095 2.1E-08 60.1 18.0 134 133-292 10-195 (210)
205 cd04732 HisA HisA. Phosphorib 98.0 4.6E-05 1E-09 69.5 9.7 76 215-293 32-107 (234)
206 PRK09722 allulose-6-phosphate 98.0 0.0011 2.5E-08 60.3 18.6 153 133-315 12-220 (229)
207 PRK06801 hypothetical protein; 98.0 0.0041 8.8E-08 58.6 22.8 109 213-324 156-283 (286)
208 KOG1606 Stationary phase-induc 97.9 0.00024 5.1E-09 62.8 13.1 135 139-293 31-243 (296)
209 PRK05718 keto-hydroxyglutarate 97.9 0.00047 1E-08 62.2 15.3 156 88-291 27-186 (212)
210 COG0269 SgbH 3-hexulose-6-phos 97.9 0.00047 1E-08 61.5 14.1 162 112-315 45-213 (217)
211 TIGR00693 thiE thiamine-phosph 97.9 0.00025 5.3E-09 62.9 12.4 81 211-293 102-185 (196)
212 PRK04180 pyridoxal biosynthesi 97.9 7.1E-05 1.5E-09 69.6 9.0 119 139-286 27-146 (293)
213 PRK14024 phosphoribosyl isomer 97.9 0.00014 3E-09 67.0 10.9 74 216-293 36-109 (241)
214 PRK02615 thiamine-phosphate py 97.8 0.00035 7.6E-09 67.5 13.6 95 196-293 230-327 (347)
215 PRK05283 deoxyribose-phosphate 97.8 0.00021 4.6E-09 65.9 11.5 128 136-292 83-226 (257)
216 PRK07315 fructose-bisphosphate 97.8 0.012 2.7E-07 55.6 23.7 79 213-293 154-237 (293)
217 PRK05581 ribulose-phosphate 3- 97.8 0.00075 1.6E-08 60.8 15.0 169 90-293 18-203 (220)
218 PRK08385 nicotinate-nucleotide 97.8 0.0015 3.2E-08 61.3 17.0 143 138-292 107-263 (278)
219 PRK07428 nicotinate-nucleotide 97.8 0.00035 7.5E-09 65.8 12.4 88 193-292 183-275 (288)
220 PRK05742 nicotinate-nucleotide 97.8 0.00032 6.9E-09 65.7 12.1 86 195-292 179-265 (277)
221 COG0352 ThiE Thiamine monophos 97.8 0.00094 2E-08 60.1 14.5 95 196-293 94-191 (211)
222 TIGR00078 nadC nicotinate-nucl 97.8 0.0004 8.7E-09 64.8 12.6 86 194-291 166-253 (265)
223 PF04131 NanE: Putative N-acet 97.8 0.0008 1.7E-08 59.0 13.6 87 193-287 21-118 (192)
224 TIGR02134 transald_staph trans 97.8 0.014 2.9E-07 53.5 21.9 175 90-296 14-207 (236)
225 PF00834 Ribul_P_3_epim: Ribul 97.7 0.00076 1.6E-08 60.4 13.0 135 133-292 9-198 (201)
226 cd01572 QPRTase Quinolinate ph 97.7 0.00038 8.2E-09 65.1 11.5 86 195-292 171-258 (268)
227 TIGR03572 WbuZ glycosyl amidat 97.7 0.00048 1E-08 62.9 11.5 75 216-293 34-108 (232)
228 PRK08227 autoinducer 2 aldolas 97.7 0.00084 1.8E-08 62.4 12.6 177 69-292 28-230 (264)
229 PRK13585 1-(5-phosphoribosyl)- 97.6 0.00027 5.8E-09 64.9 9.3 75 215-292 35-109 (241)
230 cd01573 modD_like ModD; Quinol 97.6 0.00071 1.5E-08 63.4 12.2 142 138-291 105-261 (272)
231 TIGR00007 phosphoribosylformim 97.6 0.00067 1.4E-08 61.8 11.8 75 216-293 32-106 (230)
232 PRK08072 nicotinate-nucleotide 97.6 0.0007 1.5E-08 63.5 11.9 88 194-292 176-264 (277)
233 PRK04128 1-(5-phosphoribosyl)- 97.6 0.00026 5.5E-09 64.7 8.8 75 214-292 31-106 (228)
234 PRK04169 geranylgeranylglycery 97.6 0.00047 1E-08 62.9 10.4 66 223-293 152-218 (232)
235 PRK08091 ribulose-phosphate 3- 97.6 0.0033 7.2E-08 57.2 15.7 121 140-292 82-211 (228)
236 COG0107 HisF Imidazoleglycerol 97.6 0.00042 9.1E-09 62.2 9.6 76 215-293 33-108 (256)
237 PRK13587 1-(5-phosphoribosyl)- 97.6 0.00035 7.6E-09 64.0 9.5 76 214-292 32-109 (234)
238 PF02581 TMP-TENI: Thiamine mo 97.6 0.00099 2.2E-08 58.4 11.2 77 212-291 102-180 (180)
239 PRK01033 imidazole glycerol ph 97.5 0.001 2.2E-08 61.8 11.6 75 216-293 34-108 (258)
240 TIGR02129 hisA_euk phosphoribo 97.5 0.00035 7.7E-09 64.4 8.2 69 215-293 41-109 (253)
241 PF00977 His_biosynth: Histidi 97.5 0.00067 1.5E-08 62.0 9.8 75 216-293 33-107 (229)
242 PF09370 TIM-br_sig_trns: TIM- 97.5 0.0073 1.6E-07 55.7 16.3 210 72-315 15-266 (268)
243 PRK08185 hypothetical protein; 97.5 0.075 1.6E-06 50.0 23.3 108 214-324 150-277 (283)
244 cd01568 QPRTase_NadC Quinolina 97.5 0.0014 3E-08 61.3 11.6 86 195-292 170-259 (269)
245 COG1646 Predicted phosphate-bi 97.5 0.0043 9.3E-08 56.0 13.9 35 259-293 191-225 (240)
246 TIGR00259 thylakoid_BtpA membr 97.4 0.018 3.9E-07 53.3 18.4 168 94-292 34-231 (257)
247 cd04723 HisA_HisF Phosphoribos 97.4 0.00081 1.8E-08 61.6 9.1 74 215-292 38-111 (233)
248 PRK14057 epimerase; Provisiona 97.4 0.0097 2.1E-07 55.0 16.0 130 127-292 80-225 (254)
249 cd02812 PcrB_like PcrB_like pr 97.4 0.00091 2E-08 60.5 8.9 69 218-293 141-209 (219)
250 TIGR00343 pyridoxal 5'-phospha 97.4 0.0036 7.8E-08 58.3 12.9 119 139-286 20-139 (287)
251 PRK07998 gatY putative fructos 97.4 0.063 1.4E-06 50.5 21.1 107 213-324 153-278 (283)
252 PRK06106 nicotinate-nucleotide 97.3 0.0025 5.5E-08 59.7 11.5 87 194-292 182-270 (281)
253 PF01884 PcrB: PcrB family; I 97.3 0.0018 3.9E-08 58.8 10.0 66 223-293 151-216 (230)
254 PRK13586 1-(5-phosphoribosyl)- 97.3 0.0026 5.6E-08 58.3 11.0 74 216-293 34-107 (232)
255 TIGR01769 GGGP geranylgeranylg 97.3 0.0016 3.4E-08 58.4 9.3 66 218-288 140-205 (205)
256 PRK06559 nicotinate-nucleotide 97.3 0.0025 5.3E-08 60.0 10.7 87 194-292 185-273 (290)
257 cd04727 pdxS PdxS is a subunit 97.3 0.0072 1.6E-07 56.2 13.6 118 139-286 18-137 (283)
258 PRK06552 keto-hydroxyglutarate 97.3 0.0026 5.6E-08 57.4 10.5 80 193-287 52-135 (213)
259 PRK06543 nicotinate-nucleotide 97.2 0.0034 7.4E-08 58.9 10.9 88 193-292 180-269 (281)
260 PF01729 QRPTase_C: Quinolinat 97.2 0.0064 1.4E-07 52.9 11.8 91 194-293 68-160 (169)
261 PLN02898 HMP-P kinase/thiamin- 97.2 0.0059 1.3E-07 62.2 13.4 95 196-293 380-480 (502)
262 PRK14114 1-(5-phosphoribosyl)- 97.2 0.0024 5.2E-08 58.8 9.5 73 216-292 34-106 (241)
263 COG3010 NanE Putative N-acetyl 97.2 0.016 3.4E-07 51.4 14.0 111 134-286 31-152 (229)
264 PF03437 BtpA: BtpA family; I 97.2 0.015 3.2E-07 53.8 14.6 168 94-293 35-232 (254)
265 TIGR01768 GGGP-family geranylg 97.2 0.0028 6.1E-08 57.4 9.4 66 224-293 148-213 (223)
266 TIGR01334 modD putative molybd 97.1 0.021 4.6E-07 53.5 15.5 87 193-291 176-266 (277)
267 cd04728 ThiG Thiazole synthase 97.1 0.0059 1.3E-07 55.8 11.3 40 193-232 164-204 (248)
268 PRK03512 thiamine-phosphate py 97.1 0.013 2.8E-07 52.8 13.6 80 212-293 109-191 (211)
269 PRK03170 dihydrodipicolinate s 97.1 0.13 2.8E-06 48.6 20.9 181 72-292 6-209 (292)
270 PRK06852 aldolase; Validated 97.1 0.011 2.4E-07 56.0 13.4 169 92-292 63-269 (304)
271 cd00408 DHDPS-like Dihydrodipi 97.1 0.25 5.3E-06 46.3 23.1 180 73-292 3-205 (281)
272 PRK13397 3-deoxy-7-phosphohept 97.1 0.057 1.2E-06 49.8 17.5 201 60-291 3-222 (250)
273 PLN02446 (5-phosphoribosyl)-5- 97.1 0.0053 1.2E-07 56.9 10.8 71 215-293 46-116 (262)
274 PRK12290 thiE thiamine-phospha 97.1 0.01 2.2E-07 58.7 13.3 96 197-293 291-397 (437)
275 cd00452 KDPG_aldolase KDPG and 97.1 0.0052 1.1E-07 54.4 10.3 81 193-288 43-124 (190)
276 PRK09016 quinolinate phosphori 97.1 0.005 1.1E-07 58.1 10.7 87 194-292 197-284 (296)
277 PRK12858 tagatose 1,6-diphosph 97.1 0.0076 1.6E-07 58.2 12.1 131 141-293 111-281 (340)
278 cd04729 NanE N-acetylmannosami 97.1 0.026 5.6E-07 51.0 15.1 116 133-288 24-150 (219)
279 PRK00208 thiG thiazole synthas 97.0 0.0091 2E-07 54.6 11.6 40 193-232 164-204 (250)
280 PRK13306 ulaD 3-keto-L-gulonat 97.0 0.026 5.6E-07 51.1 14.6 163 114-316 47-213 (216)
281 KOG4201 Anthranilate synthase 97.0 0.0089 1.9E-07 53.2 10.9 97 193-293 175-271 (289)
282 PRK07896 nicotinate-nucleotide 97.0 0.0076 1.7E-07 56.8 11.3 87 194-292 188-278 (289)
283 PRK01130 N-acetylmannosamine-6 97.0 0.029 6.3E-07 50.7 14.8 115 134-288 21-146 (221)
284 TIGR01919 hisA-trpF 1-(5-phosp 97.0 0.0041 8.9E-08 57.3 9.3 73 216-292 35-107 (243)
285 PRK09250 fructose-bisphosphate 97.0 0.0086 1.9E-07 57.5 11.6 175 92-293 95-323 (348)
286 TIGR02313 HpaI-NOT-DapA 2,4-di 97.0 0.24 5.1E-06 47.0 21.4 181 72-292 5-210 (294)
287 PRK07709 fructose-bisphosphate 97.0 0.34 7.4E-06 45.7 23.2 107 213-324 156-282 (285)
288 PRK06096 molybdenum transport 97.0 0.037 8.1E-07 52.1 15.3 86 193-290 177-266 (284)
289 TIGR00674 dapA dihydrodipicoli 96.9 0.28 6.2E-06 46.1 21.4 182 72-292 3-206 (285)
290 PRK13813 orotidine 5'-phosphat 96.9 0.021 4.5E-07 51.4 13.1 129 141-315 72-213 (215)
291 cd02931 ER_like_FMN Enoate red 96.9 0.078 1.7E-06 52.2 17.9 210 62-288 4-272 (382)
292 cd00947 TBP_aldolase_IIB Tagat 96.9 0.35 7.6E-06 45.4 21.3 107 213-323 148-274 (276)
293 PRK09195 gatY tagatose-bisphos 96.9 0.29 6.2E-06 46.2 20.8 107 213-324 155-281 (284)
294 PRK11750 gltB glutamate syntha 96.9 0.0087 1.9E-07 66.8 12.1 120 216-335 601-734 (1485)
295 PRK12595 bifunctional 3-deoxy- 96.9 0.17 3.6E-06 49.4 19.8 206 57-291 101-325 (360)
296 PRK07114 keto-hydroxyglutarate 96.9 0.0073 1.6E-07 54.8 9.6 80 193-287 54-138 (222)
297 PRK08999 hypothetical protein; 96.9 0.0043 9.3E-08 59.1 8.6 77 212-291 233-311 (312)
298 KOG4175 Tryptophan synthase al 96.9 0.06 1.3E-06 47.6 14.6 148 134-295 30-242 (268)
299 COG1830 FbaB DhnA-type fructos 96.9 0.036 7.9E-07 51.1 14.0 164 92-293 47-242 (265)
300 PLN02591 tryptophan synthase 96.9 0.0097 2.1E-07 55.0 10.3 134 71-233 78-219 (250)
301 PRK06978 nicotinate-nucleotide 96.8 0.011 2.5E-07 55.6 10.7 87 194-292 194-281 (294)
302 KOG3111 D-ribulose-5-phosphate 96.8 0.09 2E-06 46.2 15.0 155 133-318 14-221 (224)
303 TIGR03249 KdgD 5-dehydro-4-deo 96.8 0.5 1.1E-05 44.7 22.5 184 72-292 10-213 (296)
304 cd00950 DHDPS Dihydrodipicolin 96.8 0.3 6.6E-06 45.8 20.1 181 72-292 5-208 (284)
305 TIGR00736 nifR3_rel_arch TIM-b 96.8 0.014 3.1E-07 53.3 10.6 83 123-232 135-220 (231)
306 CHL00200 trpA tryptophan synth 96.7 0.029 6.3E-07 52.3 12.7 41 193-233 191-232 (263)
307 PF00701 DHDPS: Dihydrodipicol 96.7 0.41 8.9E-06 45.1 20.8 180 73-292 7-209 (289)
308 PRK09140 2-dehydro-3-deoxy-6-p 96.7 0.016 3.4E-07 52.1 10.5 80 193-287 49-130 (206)
309 cd00381 IMPDH IMPDH: The catal 96.7 0.02 4.2E-07 55.2 11.8 68 215-288 96-163 (325)
310 cd00439 Transaldolase Transald 96.7 0.17 3.7E-06 46.9 17.5 141 122-295 84-241 (252)
311 PF03932 CutC: CutC family; I 96.7 0.023 5E-07 50.7 11.2 124 130-286 66-197 (201)
312 PLN02617 imidazole glycerol ph 96.7 0.01 2.2E-07 60.8 10.0 76 216-293 271-359 (538)
313 COG0176 MipB Transaldolase [Ca 96.7 0.34 7.4E-06 44.3 18.6 150 115-298 54-210 (239)
314 PRK12737 gatY tagatose-bisphos 96.7 0.6 1.3E-05 44.0 21.2 107 213-324 155-281 (284)
315 cd04726 KGPDC_HPS 3-Keto-L-gul 96.7 0.068 1.5E-06 47.3 14.1 125 126-289 2-134 (202)
316 PLN02716 nicotinate-nucleotide 96.7 0.019 4.2E-07 54.4 10.9 94 194-292 188-294 (308)
317 TIGR02319 CPEP_Pphonmut carbox 96.6 0.36 7.8E-06 45.7 19.3 179 90-294 25-239 (294)
318 PRK05835 fructose-bisphosphate 96.6 0.67 1.4E-05 44.1 22.6 109 213-324 155-304 (307)
319 TIGR02320 PEP_mutase phosphoen 96.6 0.46 9.9E-06 44.9 19.9 193 74-294 10-246 (285)
320 cd04739 DHOD_like Dihydroorota 96.6 0.06 1.3E-06 51.8 14.2 186 71-279 99-304 (325)
321 cd00951 KDGDH 5-dehydro-4-deox 96.6 0.69 1.5E-05 43.7 25.3 182 72-292 5-208 (289)
322 cd02810 DHOD_DHPD_FMN Dihydroo 96.6 0.047 1E-06 51.4 13.2 153 71-232 98-272 (289)
323 cd03319 L-Ala-DL-Glu_epimerase 96.5 0.19 4.1E-06 48.0 17.2 127 125-291 126-261 (316)
324 PRK00230 orotidine 5'-phosphat 96.5 0.05 1.1E-06 49.7 12.4 79 216-315 139-228 (230)
325 PF01207 Dus: Dihydrouridine s 96.5 0.018 4E-07 55.0 9.9 88 122-232 122-213 (309)
326 PF04898 Glu_syn_central: Glut 96.5 0.031 6.7E-07 52.5 10.8 120 216-335 146-280 (287)
327 COG0800 Eda 2-keto-3-deoxy-6-p 96.5 0.013 2.8E-07 52.4 7.9 79 193-286 52-131 (211)
328 KOG2335 tRNA-dihydrouridine sy 96.4 0.043 9.3E-07 52.6 11.7 89 123-232 142-233 (358)
329 PF01116 F_bP_aldolase: Fructo 96.4 0.31 6.6E-06 46.1 17.5 109 214-324 156-284 (287)
330 COG0329 DapA Dihydrodipicolina 96.4 0.91 2E-05 43.2 24.8 182 72-291 9-212 (299)
331 cd04740 DHOD_1B_like Dihydroor 96.4 0.18 4E-06 47.6 16.0 151 71-232 89-260 (296)
332 cd00377 ICL_PEPM Members of th 96.4 0.63 1.4E-05 42.9 18.9 178 90-294 18-232 (243)
333 COG0106 HisA Phosphoribosylfor 96.4 0.028 6.1E-07 51.3 9.7 73 215-291 34-107 (241)
334 TIGR00262 trpA tryptophan synt 96.4 0.033 7.3E-07 51.7 10.5 41 192-232 186-227 (256)
335 TIGR01858 tag_bisphos_ald clas 96.3 0.96 2.1E-05 42.6 23.2 107 213-324 153-279 (282)
336 COG1954 GlpP Glycerol-3-phosph 96.3 0.055 1.2E-06 46.6 10.6 109 90-234 65-175 (181)
337 TIGR02317 prpB methylisocitrat 96.3 0.71 1.5E-05 43.6 19.2 178 90-294 22-235 (285)
338 PRK11320 prpB 2-methylisocitra 96.3 0.7 1.5E-05 43.8 19.3 178 91-294 27-240 (292)
339 PTZ00314 inosine-5'-monophosph 96.3 0.02 4.2E-07 58.3 9.4 233 41-288 18-310 (495)
340 CHL00162 thiG thiamin biosynth 96.3 0.02 4.2E-07 52.5 8.3 39 194-232 179-218 (267)
341 PF05690 ThiG: Thiazole biosyn 96.3 0.03 6.6E-07 50.7 9.4 68 141-232 136-204 (247)
342 PRK11572 copper homeostasis pr 96.3 0.082 1.8E-06 48.6 12.5 125 130-288 67-198 (248)
343 PRK08610 fructose-bisphosphate 96.3 1 2.2E-05 42.6 22.4 107 213-324 156-282 (286)
344 PRK09517 multifunctional thiam 96.3 0.076 1.6E-06 56.9 14.2 80 213-293 109-199 (755)
345 PRK03620 5-dehydro-4-deoxygluc 96.3 1.1 2.3E-05 42.7 21.8 182 72-292 12-215 (303)
346 TIGR01302 IMP_dehydrog inosine 96.3 0.019 4.1E-07 57.8 9.0 232 42-288 3-293 (450)
347 PRK12738 kbaY tagatose-bisphos 96.3 1.1 2.3E-05 42.4 23.8 107 213-324 155-281 (286)
348 PRK06843 inosine 5-monophospha 96.2 0.021 4.5E-07 56.3 8.7 67 216-288 156-222 (404)
349 PRK07565 dihydroorotate dehydr 96.2 0.14 3.1E-06 49.3 14.3 149 71-232 101-268 (334)
350 PRK07259 dihydroorotate dehydr 96.2 0.19 4.2E-06 47.6 14.9 152 70-232 90-263 (301)
351 cd00331 IGPS Indole-3-glycerol 96.2 0.046 1E-06 49.2 10.2 72 215-292 34-105 (217)
352 TIGR03128 RuMP_HxlA 3-hexulose 96.2 0.11 2.4E-06 46.2 12.5 117 134-289 10-134 (206)
353 cd02801 DUS_like_FMN Dihydrour 96.2 0.18 3.8E-06 45.6 14.0 73 137-232 139-213 (231)
354 cd02940 DHPD_FMN Dihydropyrimi 96.1 0.17 3.7E-06 48.0 14.0 105 123-232 169-281 (299)
355 PF00478 IMPDH: IMP dehydrogen 96.1 0.059 1.3E-06 52.2 10.8 68 215-288 110-177 (352)
356 TIGR00167 cbbA ketose-bisphosp 96.1 1.3 2.9E-05 41.8 23.7 108 213-324 158-285 (288)
357 PRK04147 N-acetylneuraminate l 96.1 1.3 2.9E-05 41.8 20.8 179 72-291 8-210 (293)
358 COG2022 ThiG Uncharacterized e 96.1 0.069 1.5E-06 48.2 10.4 39 194-232 172-211 (262)
359 PRK13111 trpA tryptophan synth 96.0 0.15 3.2E-06 47.5 13.0 40 193-233 189-229 (258)
360 TIGR00737 nifR3_yhdG putative 96.0 0.23 5E-06 47.5 14.6 72 137-231 148-221 (319)
361 TIGR01306 GMP_reduct_2 guanosi 96.0 0.16 3.6E-06 48.6 13.3 67 216-288 97-165 (321)
362 PRK05286 dihydroorotate dehydr 96.0 0.11 2.4E-06 50.4 12.4 99 123-232 212-318 (344)
363 PTZ00411 transaldolase-like pr 96.0 0.63 1.4E-05 44.9 17.2 99 194-297 151-264 (333)
364 COG0135 TrpF Phosphoribosylant 95.9 0.62 1.3E-05 41.9 16.0 156 92-290 13-185 (208)
365 PRK12857 fructose-1,6-bisphosp 95.9 1.6 3.4E-05 41.3 21.0 107 213-324 155-281 (284)
366 TIGR00734 hisAF_rel hisA/hisF 95.9 0.043 9.3E-07 49.8 8.7 72 215-292 39-112 (221)
367 COG0042 tRNA-dihydrouridine sy 95.9 0.14 2.9E-06 49.3 12.6 86 124-232 138-228 (323)
368 PRK10550 tRNA-dihydrouridine s 95.8 0.13 2.8E-06 49.2 11.9 86 124-232 135-224 (312)
369 COG4981 Enoyl reductase domain 95.8 0.52 1.1E-05 47.6 16.2 210 48-294 10-259 (717)
370 TIGR01305 GMP_reduct_1 guanosi 95.8 0.11 2.4E-06 49.7 11.1 68 215-288 109-178 (343)
371 PRK12309 transaldolase/EF-hand 95.8 0.88 1.9E-05 44.9 17.7 97 194-296 145-257 (391)
372 PLN02417 dihydrodipicolinate s 95.8 0.08 1.7E-06 49.8 10.1 92 218-312 28-124 (280)
373 COG0159 TrpA Tryptophan syntha 95.8 0.067 1.4E-06 49.7 9.2 39 193-232 194-233 (265)
374 TIGR02313 HpaI-NOT-DapA 2,4-di 95.8 0.079 1.7E-06 50.2 10.1 93 218-313 27-124 (294)
375 cd00377 ICL_PEPM Members of th 95.7 0.19 4.1E-06 46.3 12.3 98 193-290 58-182 (243)
376 PRK08673 3-deoxy-7-phosphohept 95.7 1.6 3.4E-05 42.2 18.7 127 193-322 190-333 (335)
377 PRK10415 tRNA-dihydrouridine s 95.7 0.16 3.4E-06 48.9 11.9 72 137-232 150-224 (321)
378 cd00957 Transaldolase_TalAB Tr 95.7 0.91 2E-05 43.4 16.8 97 194-296 139-251 (313)
379 PLN02274 inosine-5'-monophosph 95.6 0.056 1.2E-06 55.1 9.1 235 40-288 21-317 (505)
380 COG5016 Pyruvate/oxaloacetate 95.6 0.2 4.4E-06 48.8 12.3 117 89-232 99-231 (472)
381 TIGR03569 NeuB_NnaB N-acetylne 95.6 0.31 6.6E-06 47.0 13.6 76 193-279 78-153 (329)
382 cd00954 NAL N-Acetylneuraminic 95.6 2.1 4.5E-05 40.4 24.4 179 73-291 6-209 (288)
383 cd04735 OYE_like_4_FMN Old yel 95.6 1.9 4E-05 42.0 19.3 209 62-290 4-257 (353)
384 cd00952 CHBPH_aldolase Trans-o 95.6 0.09 1.9E-06 50.2 9.9 93 218-313 35-132 (309)
385 PRK11840 bifunctional sulfur c 95.6 0.17 3.6E-06 48.3 11.3 136 92-232 127-278 (326)
386 PF03740 PdxJ: Pyridoxal phosp 95.6 1.8 4E-05 39.5 18.5 123 139-293 25-157 (239)
387 PRK03620 5-dehydro-4-deoxygluc 95.6 0.1 2.2E-06 49.7 10.1 92 218-313 34-130 (303)
388 COG0157 NadC Nicotinate-nucleo 95.5 0.15 3.2E-06 47.6 10.6 86 194-292 176-266 (280)
389 TIGR03569 NeuB_NnaB N-acetylne 95.5 1.8 3.8E-05 41.8 18.4 233 73-324 1-261 (329)
390 PF04309 G3P_antiterm: Glycero 95.5 0.045 9.8E-07 47.7 6.9 79 123-233 91-170 (175)
391 cd00408 DHDPS-like Dihydrodipi 95.5 0.13 2.9E-06 48.1 10.4 92 218-312 24-120 (281)
392 PRK13957 indole-3-glycerol-pho 95.4 0.094 2E-06 48.3 9.0 71 216-292 65-135 (247)
393 cd00951 KDGDH 5-dehydro-4-deox 95.4 0.12 2.6E-06 48.8 10.1 91 218-312 27-122 (289)
394 TIGR01303 IMP_DH_rel_1 IMP deh 95.4 0.084 1.8E-06 53.4 9.5 229 41-288 12-294 (475)
395 COG3142 CutC Uncharacterized p 95.4 0.33 7.2E-06 43.9 11.9 118 134-284 71-196 (241)
396 COG2513 PrpB PEP phosphonomuta 95.4 2.5 5.4E-05 39.7 18.5 180 91-295 28-241 (289)
397 cd01571 NAPRTase_B Nicotinate 95.3 0.15 3.2E-06 48.6 10.3 93 194-292 172-277 (302)
398 TIGR01037 pyrD_sub1_fam dihydr 95.3 0.13 2.7E-06 48.8 9.9 100 123-232 158-263 (300)
399 PRK13125 trpA tryptophan synth 95.3 0.7 1.5E-05 42.5 14.5 88 133-232 15-108 (244)
400 PF00290 Trp_syntA: Tryptophan 95.3 0.2 4.3E-06 46.6 10.7 40 193-233 187-227 (259)
401 TIGR01521 FruBisAldo_II_B fruc 95.2 3.2 6.9E-05 40.2 21.0 112 213-325 171-325 (347)
402 PRK09196 fructose-1,6-bisphosp 95.2 3.2 7E-05 40.2 21.3 112 213-325 173-327 (347)
403 PRK05269 transaldolase B; Prov 95.2 1.8 4E-05 41.5 17.2 97 194-296 141-253 (318)
404 cd03316 MR_like Mandelate race 95.2 0.31 6.7E-06 47.3 12.3 122 134-288 139-270 (357)
405 COG0329 DapA Dihydrodipicolina 95.2 0.18 3.9E-06 48.0 10.3 93 218-313 31-128 (299)
406 cd06557 KPHMT-like Ketopantoat 95.2 0.89 1.9E-05 42.2 14.6 139 75-266 14-200 (254)
407 cd03174 DRE_TIM_metallolyase D 95.2 1.2 2.7E-05 40.9 15.8 154 134-314 17-188 (265)
408 TIGR00874 talAB transaldolase. 95.1 2.3 5E-05 40.7 17.6 98 194-297 139-252 (317)
409 cd04738 DHOD_2_like Dihydrooro 95.1 0.15 3.3E-06 49.1 9.7 99 123-232 203-309 (327)
410 cd06556 ICL_KPHMT Members of t 95.1 1.8 3.9E-05 39.8 16.2 134 90-267 21-199 (240)
411 PRK13398 3-deoxy-7-phosphohept 95.1 3 6.5E-05 39.0 18.6 97 193-292 124-235 (266)
412 TIGR00683 nanA N-acetylneurami 95.0 0.2 4.4E-06 47.3 10.3 93 217-312 26-124 (290)
413 PRK05567 inosine 5'-monophosph 95.0 0.12 2.5E-06 52.6 9.2 234 41-288 9-297 (486)
414 PRK13396 3-deoxy-7-phosphohept 95.0 0.8 1.7E-05 44.5 14.4 148 77-287 142-305 (352)
415 PRK05581 ribulose-phosphate 3- 95.0 1.1 2.5E-05 40.0 14.7 124 133-289 13-139 (220)
416 TIGR03249 KdgD 5-dehydro-4-deo 95.0 0.19 4.1E-06 47.6 10.0 92 218-313 32-128 (296)
417 PRK13399 fructose-1,6-bisphosp 94.9 3.9 8.4E-05 39.7 20.9 112 213-325 173-327 (347)
418 cd03315 MLE_like Muconate lact 94.9 1.3 2.7E-05 41.2 15.1 118 133-289 84-211 (265)
419 TIGR03151 enACPred_II putative 94.9 0.6 1.3E-05 44.5 13.1 112 91-233 77-191 (307)
420 cd02911 arch_FMN Archeal FMN-b 94.9 0.31 6.7E-06 44.6 10.7 80 123-232 140-220 (233)
421 PRK12346 transaldolase A; Prov 94.9 2 4.3E-05 41.1 16.4 99 194-297 140-253 (316)
422 cd00516 PRTase_typeII Phosphor 94.8 0.33 7.1E-06 45.5 11.1 94 194-292 170-271 (281)
423 cd00564 TMP_TenI Thiamine mono 94.8 0.47 1E-05 41.2 11.4 108 137-290 13-124 (196)
424 TIGR00674 dapA dihydrodipicoli 94.8 0.27 5.8E-06 46.3 10.4 92 218-312 25-121 (285)
425 PRK00366 ispG 4-hydroxy-3-meth 94.8 0.63 1.4E-05 44.8 12.7 79 123-231 26-107 (360)
426 TIGR00742 yjbN tRNA dihydrouri 94.8 0.4 8.8E-06 46.0 11.6 94 123-232 124-223 (318)
427 cd00954 NAL N-Acetylneuraminic 94.7 0.22 4.8E-06 47.0 9.7 93 218-313 27-125 (288)
428 PRK08318 dihydropyrimidine deh 94.7 0.14 3.1E-06 51.0 8.7 106 123-233 169-283 (420)
429 cd04741 DHOD_1A_like Dihydroor 94.7 0.18 3.8E-06 47.9 8.9 101 123-232 158-272 (294)
430 PRK05265 pyridoxine 5'-phospha 94.7 1.4 3E-05 40.3 14.1 123 139-293 27-159 (239)
431 PLN02334 ribulose-phosphate 3- 94.7 1.8 3.9E-05 39.3 15.3 126 134-290 18-148 (229)
432 TIGR00693 thiE thiamine-phosph 94.7 0.44 9.5E-06 42.0 10.9 109 138-291 15-126 (196)
433 PRK00311 panB 3-methyl-2-oxobu 94.7 1.4 3.1E-05 41.1 14.6 139 75-266 17-203 (264)
434 PRK04147 N-acetylneuraminate l 94.6 0.25 5.4E-06 46.7 9.8 92 218-312 30-127 (293)
435 TIGR03586 PseI pseudaminic aci 94.6 1 2.2E-05 43.4 13.9 83 194-287 80-166 (327)
436 cd00950 DHDPS Dihydrodipicolin 94.6 0.31 6.8E-06 45.7 10.4 93 217-312 26-123 (284)
437 cd02809 alpha_hydroxyacid_oxid 94.6 0.41 8.9E-06 45.4 11.2 86 198-288 109-200 (299)
438 cd00953 KDG_aldolase KDG (2-ke 94.5 4.2 9.1E-05 38.1 22.1 176 74-292 7-203 (279)
439 COG2876 AroA 3-deoxy-D-arabino 94.5 4.1 8.8E-05 37.8 16.9 183 73-288 47-249 (286)
440 PLN02979 glycolate oxidase 94.5 0.38 8.1E-06 46.8 10.6 42 245-289 211-252 (366)
441 PRK05458 guanosine 5'-monophos 94.4 0.23 4.9E-06 47.8 8.9 67 216-288 100-168 (326)
442 PRK07107 inosine 5-monophospha 94.4 0.21 4.5E-06 51.0 9.1 234 41-288 10-312 (502)
443 PF00701 DHDPS: Dihydrodipicol 94.4 0.21 4.6E-06 47.0 8.6 93 216-311 26-123 (289)
444 TIGR01768 GGGP-family geranylg 94.3 0.44 9.5E-06 43.3 10.1 41 193-233 167-209 (223)
445 TIGR01769 GGGP geranylgeranylg 94.3 0.42 9.1E-06 42.9 9.8 73 133-231 131-204 (205)
446 cd02812 PcrB_like PcrB_like pr 94.3 0.35 7.5E-06 43.9 9.3 72 133-233 132-205 (219)
447 cd04722 TIM_phosphate_binding 94.3 1.2 2.5E-05 38.3 12.6 128 136-291 12-146 (200)
448 TIGR00559 pdxJ pyridoxine 5'-p 94.2 2 4.4E-05 39.2 14.1 123 139-293 24-156 (237)
449 TIGR02321 Pphn_pyruv_hyd phosp 94.2 5.1 0.00011 37.9 20.2 191 73-294 15-241 (290)
450 PRK11815 tRNA-dihydrouridine s 94.2 2 4.4E-05 41.4 15.1 79 136-231 151-232 (333)
451 PLN02535 glycolate oxidase 94.1 0.47 1E-05 46.3 10.6 87 199-288 118-251 (364)
452 PLN02424 ketopantoate hydroxym 94.1 3.5 7.6E-05 39.6 16.0 134 90-266 44-224 (332)
453 PRK07455 keto-hydroxyglutarate 94.1 0.74 1.6E-05 40.6 10.9 117 126-287 14-131 (187)
454 PRK07084 fructose-bisphosphate 94.1 5.9 0.00013 38.0 20.6 81 213-294 164-274 (321)
455 PRK13523 NADPH dehydrogenase N 94.0 0.45 9.7E-06 46.0 10.3 77 134-231 225-304 (337)
456 PRK03170 dihydrodipicolinate s 94.0 0.44 9.6E-06 44.9 10.1 92 218-312 28-124 (292)
457 PLN02493 probable peroxisomal 94.0 0.52 1.1E-05 46.0 10.5 42 245-289 212-253 (367)
458 COG0167 PyrD Dihydroorotate de 93.9 0.39 8.6E-06 45.7 9.4 101 123-232 162-270 (310)
459 PRK06512 thiamine-phosphate py 93.9 1.2 2.6E-05 40.5 12.2 80 194-290 61-140 (221)
460 PRK13305 sgbH 3-keto-L-gulonat 93.9 0.39 8.5E-06 43.5 8.9 96 213-316 117-213 (218)
461 cd00945 Aldolase_Class_I Class 93.9 0.85 1.9E-05 39.6 11.1 83 216-312 17-108 (201)
462 PF03102 NeuB: NeuB family; I 93.9 0.4 8.7E-06 44.1 9.1 83 193-286 58-144 (241)
463 cd02922 FCB2_FMN Flavocytochro 93.9 1.7 3.7E-05 42.2 13.9 83 204-289 117-242 (344)
464 TIGR00683 nanA N-acetylneurami 93.8 6.1 0.00013 37.3 24.4 179 72-291 5-208 (290)
465 TIGR00222 panB 3-methyl-2-oxob 93.8 4.6 9.9E-05 37.6 15.9 39 216-266 164-202 (263)
466 COG0352 ThiE Thiamine monophos 93.7 2.8 6E-05 37.8 14.0 114 92-232 56-186 (211)
467 PRK07807 inosine 5-monophospha 93.7 0.36 7.9E-06 48.9 9.3 232 41-288 13-296 (479)
468 PRK09427 bifunctional indole-3 93.7 0.91 2E-05 45.7 11.9 132 134-287 144-283 (454)
469 COG3684 LacD Tagatose-1,6-bisp 93.7 3 6.4E-05 38.6 14.0 100 218-332 192-296 (306)
470 COG0269 SgbH 3-hexulose-6-phos 93.7 2.2 4.8E-05 38.4 13.0 112 92-232 71-192 (217)
471 cd02933 OYE_like_FMN Old yello 93.6 1 2.2E-05 43.6 11.9 73 134-231 239-313 (338)
472 KOG3111 D-ribulose-5-phosphate 93.6 1.3 2.8E-05 39.1 11.2 58 194-255 158-216 (224)
473 TIGR00612 ispG_gcpE 1-hydroxy- 93.6 1.4 3E-05 42.3 12.3 79 123-231 18-99 (346)
474 COG0502 BioB Biotin synthase a 93.6 1.6 3.5E-05 42.0 12.9 186 86-292 85-298 (335)
475 COG0821 gcpE 1-hydroxy-2-methy 93.5 1.4 3E-05 42.1 12.1 79 123-231 20-101 (361)
476 COG2089 SpsE Sialic acid synth 93.5 6 0.00013 37.9 16.2 242 63-323 2-272 (347)
477 cd00003 PNPsynthase Pyridoxine 93.5 6 0.00013 36.1 17.3 123 139-293 24-156 (234)
478 PRK14042 pyruvate carboxylase 93.4 2.3 5E-05 44.3 14.7 188 5-234 23-231 (596)
479 PF04476 DUF556: Protein of un 93.4 2.9 6.4E-05 38.1 13.5 95 194-291 40-154 (235)
480 PF04309 G3P_antiterm: Glycero 93.3 0.042 9.2E-07 47.9 1.6 137 134-293 29-174 (175)
481 cd04733 OYE_like_2_FMN Old yel 93.3 1.7 3.8E-05 41.9 13.0 84 134-231 234-321 (338)
482 cd04734 OYE_like_3_FMN Old yel 93.3 1.7 3.8E-05 42.1 12.9 84 135-231 227-314 (343)
483 cd02811 IDI-2_FMN Isopentenyl- 93.3 1.2 2.7E-05 42.8 11.8 99 189-289 96-210 (326)
484 PRK11572 copper homeostasis pr 93.2 3.7 8.1E-05 37.9 14.2 68 140-232 12-93 (248)
485 PLN02411 12-oxophytodienoate r 93.2 7.7 0.00017 38.3 17.5 92 62-159 15-109 (391)
486 cd03332 LMO_FMN L-Lactate 2-mo 93.0 1.2 2.6E-05 43.8 11.4 42 245-289 241-282 (383)
487 PRK05096 guanosine 5'-monophos 93.0 1.1 2.5E-05 43.0 10.7 67 216-288 111-179 (346)
488 PRK12581 oxaloacetate decarbox 92.9 4.3 9.4E-05 41.0 15.3 187 5-234 32-240 (468)
489 PRK00043 thiE thiamine-phospha 92.9 3.1 6.7E-05 36.8 13.2 40 193-232 148-188 (212)
490 PF13714 PEP_mutase: Phosphoen 92.9 7.4 0.00016 35.7 16.2 172 90-294 18-225 (238)
491 PF02548 Pantoate_transf: Keto 92.9 6.9 0.00015 36.4 15.5 133 90-266 25-204 (261)
492 cd04724 Tryptophan_synthase_al 92.9 0.86 1.9E-05 41.9 9.7 39 193-232 176-215 (242)
493 COG0434 SgcQ Predicted TIM-bar 92.9 0.3 6.6E-06 44.4 6.4 67 218-292 169-236 (263)
494 cd04730 NPD_like 2-Nitropropan 92.8 3.1 6.8E-05 37.6 13.3 116 89-233 68-186 (236)
495 COG3836 HpcH 2,4-dihydroxyhept 92.7 3 6.5E-05 38.1 12.4 87 213-299 77-187 (255)
496 TIGR01036 pyrD_sub2 dihydrooro 92.7 0.51 1.1E-05 45.6 8.2 100 123-232 211-317 (335)
497 PRK04161 tagatose 1,6-diphosph 92.6 4.7 0.0001 38.6 14.3 73 259-339 242-321 (329)
498 PRK08195 4-hyroxy-2-oxovalerat 92.6 5.1 0.00011 38.8 14.9 155 134-314 23-186 (337)
499 cd06556 ICL_KPHMT Members of t 92.6 0.8 1.7E-05 42.1 8.9 84 204-288 11-109 (240)
500 PRK09250 fructose-bisphosphate 92.6 0.91 2E-05 43.8 9.5 115 137-289 92-238 (348)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=8.2e-85 Score=589.69 Aligned_cols=337 Identities=74% Similarity=1.129 Sum_probs=324.1
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccccc
Q 018919 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (349)
Q Consensus 4 ~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~ 83 (349)
++|++|||+.|+++||+.+|+|+.|||+|+.|+++|.++|.+|.|+||+|++++.+|+||+++|.+++.||++||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 84 l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+.||+||.+.+++|.++|++|++|+++++++|||.+..| +..|||||.++|++.+.++++|++++|++++.+|+|+|..
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCcCcccccCC--------------------CCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQG--------------------LDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~--------------------~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
|+|+.|++|.|..|+.+.++++.+ +.|+.+ |++|+|+|+.|++||++|++++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 999999999999998776665532 678999 99999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.++|+++|+||||||||+|..|+++++|+|+.+++.+++||+.|||||+|.||+|||++||.+|.+|||++|+++++|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCC
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 340 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~ 340 (349)
||+++++.|++|++..|++.||++++|+++..+....+.
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~s~ 359 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEESR 359 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeechhh
Confidence 999999999999999999999999999999865554443
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=2.7e-78 Score=577.94 Aligned_cols=344 Identities=89% Similarity=1.302 Sum_probs=321.4
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
.++|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++||++++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.||++|.++|++|+++|+++++|+.+++++|||++..+++.|||||..+|++.+.+++++++++|++++++|+|+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999887667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCcCccccc--------------------CCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKNF--------------------QGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~--------------------~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
|+|++|++++|..|..+..++. ....++.+ |++|+|+|+.|++||++|++.++++|++|
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 9999999999988755433221 01457778 99999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.++|+|+|+||||||||+++.++++++|+++++++.+++|||++|||+++.|++|||++||++|+|||||+|+++..|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCCCCCCCCCC
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLPRPVPR 348 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~~~~~~~ 348 (349)
|+.++++.+++|++..|.++|+++++|+++..+.... ..|+|--+
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~--~~~~~~~~ 366 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEW--DTPRPSAR 366 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHH--hccCcccC
Confidence 9999999999999999999999999999998876554 44444333
No 3
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=2.3e-76 Score=565.29 Aligned_cols=339 Identities=39% Similarity=0.605 Sum_probs=316.9
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccc
Q 018919 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (349)
Q Consensus 2 ~~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~ 81 (349)
..++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++|||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhC-CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC
Q 018919 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (349)
Q Consensus 82 ~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~-~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p 160 (349)
+.+.||++|.++|++|.++|+++++|+.++.++|||.+.. +++.|||||..+|++.+.++++|++++|+++|++|+|+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 478999999999999999999999999999999999999
Q ss_pred CCCchhHHhhhhcCCCCcCcc-------------cccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCC
Q 018919 161 RLGRREADIKNRFTLPPFLTL-------------KNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 226 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~-------------~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~ 226 (349)
+.|+|++|.|++|..|..... .......++.+ |++|+|+++.+++||++|++.++++|++|.++|+
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gv 250 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGA 250 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCc
Confidence 999999999999987743210 00111235667 9999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHH
Q 018919 227 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 306 (349)
Q Consensus 227 d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~ 306 (349)
|+|+||||||||++.++++++.|+++++++++++|||++|||+++.|++|+|++||++|+||||++|+++..|++|+.++
T Consensus 251 d~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~ 330 (367)
T TIGR02708 251 SGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQV 330 (367)
T ss_pred CEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999998866899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcccceecccCC
Q 018919 307 LEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 340 (349)
Q Consensus 307 l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~ 340 (349)
++.+++||+..|.++|+++++||++..+...+..
T Consensus 331 l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~~~ 364 (367)
T TIGR02708 331 FEYLNKELKRVMQLTGTQTIEDVKGFDLRHNPYG 364 (367)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHhCccccccCCCC
Confidence 9999999999999999999999999988665544
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=9.3e-76 Score=563.62 Aligned_cols=334 Identities=39% Similarity=0.636 Sum_probs=313.3
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
.++|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
.+.||++|.++|++|++.|+++++|+.++.++|||.+..+++.|||||.++|++.+.++++|++++|+++|++|+|+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999887667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCc--------C----------------cccccC-----------------CCCCCch-HHHHHHHH
Q 018919 163 GRREADIKNRFTLPPF--------L----------------TLKNFQ-----------------GLDLGKM-DEDVKWLQ 200 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~--------~----------------~~~~~~-----------------~~~~~~~-~~~i~~i~ 200 (349)
|+|++|.|++|..|.. . ...+.. ...++.+ |++|+|++
T Consensus 162 G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr 241 (381)
T PRK11197 162 GARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIR 241 (381)
T ss_pred CCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHH
Confidence 9999999999987731 0 001100 1346778 99999999
Q ss_pred HhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 201 TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 201 ~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
+.|++||++|++.+.++|+.+.++|+|+|+|+|||||+++..+++.+.|.++++.+..++|||++|||+++.|++|+|++
T Consensus 242 ~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaL 321 (381)
T PRK11197 242 DFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIAL 321 (381)
T ss_pred HhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999887668999999999999999999999
Q ss_pred CCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceec
Q 018919 281 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 281 GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
||++|++||+|+++++..|++||.++++.+++||+..|.++|+++++|+++..+..
T Consensus 322 GA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~ 377 (381)
T PRK11197 322 GADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ 377 (381)
T ss_pred CcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence 99999999999999999999999999999999999999999999999999887643
No 5
>PLN02535 glycolate oxidase
Probab=100.00 E-value=1.3e-75 Score=560.25 Aligned_cols=341 Identities=63% Similarity=0.982 Sum_probs=318.4
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccc
Q 018919 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (349)
Q Consensus 2 ~~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~ 81 (349)
++++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++||+++
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCC
Q 018919 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (349)
Q Consensus 82 ~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~ 161 (349)
+.+.||++|.++|++|+++|+++++|+.+++++|||++..+++.|||||..+|++.+.++++|++++|+++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999988766789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCcCccc----------cc-------CCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHH
Q 018919 162 LGRREADIKNRFTLPPFLTLK----------NF-------QGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQ 223 (349)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~----------~~-------~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~ 223 (349)
.|+|++|+|++|..|...... .. ....++.+ |++|+|+|+.+++||++|++.++++|+.+.+
T Consensus 163 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~ 242 (364)
T PLN02535 163 LGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVE 242 (364)
T ss_pred CCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHh
Confidence 999999999999877210000 00 01357778 9999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHH
Q 018919 224 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 303 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv 303 (349)
+|+|+|+++|||||++++++++++.|+++++++..++|||++|||+++.|++|+|++||++|+|||+|+++++..|++|+
T Consensus 243 ~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv 322 (364)
T PLN02535 243 VGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGV 322 (364)
T ss_pred cCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHH
Confidence 99999999999999999999999999999998866799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCCCC
Q 018919 304 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 342 (349)
Q Consensus 304 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~ 342 (349)
.++++.+.+||+..|.++|+.+++|++++.++....+.|
T Consensus 323 ~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~~ 361 (364)
T PLN02535 323 RKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERLQ 361 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhhh
Confidence 999999999999999999999999999988866555544
No 6
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1e-74 Score=557.41 Aligned_cols=330 Identities=42% Similarity=0.667 Sum_probs=309.6
Q ss_pred CCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccccc
Q 018919 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (349)
Q Consensus 4 ~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~ 83 (349)
++|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|.|+||+|++++++||+|+|||++++.||++||++++.
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 84 l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+.||++|.++|++|.++|+++++|+++++++|||++..+ ++.|||||..+|++.+.++++|++++|+++|++|+|+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999988754 7899999999999999999999999999999999999999
Q ss_pred CchhHHhhhhcCCCCc--Ccc------------------cccC--------------CCCCCch-HHHHHHHHHhcCCcE
Q 018919 163 GRREADIKNRFTLPPF--LTL------------------KNFQ--------------GLDLGKM-DEDVKWLQTITKLPI 207 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~--~~~------------------~~~~--------------~~~~~~~-~~~i~~i~~~~~~pv 207 (349)
|+|++|.|++|. |.. .+. .+.. ...++.+ |++|+|+++.|++||
T Consensus 178 g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 999999999983 421 110 0000 0246778 999999999999999
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
++|++.+.++|+.+.++|+|+|+|+|||||+++++++++++|+++++++++++||+++|||+++.|++|||++||++|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred chHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 288 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 288 g~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
||||+|+++..|++||+++++.+++||+..|.++|+++++||+++.+
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 99999999999999999999999999999999999999999988753
No 7
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.1e-74 Score=552.69 Aligned_cols=321 Identities=45% Similarity=0.720 Sum_probs=302.7
Q ss_pred HHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCC
Q 018919 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (349)
Q Consensus 8 ~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~ 87 (349)
+|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++||++.+++.||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhH
Q 018919 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~ 167 (349)
++|.++|++|++.|+++++|+++++++|||.+..+++.|||||.. +++.+.++++|++++|+++|++|+|+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999987667899999996 6899999999999999999999999999999999
Q ss_pred HhhhhcCCCCcCcccc------------------------cC---------------CCCCCch-HHHHHHHHHhcCCcE
Q 018919 168 DIKNRFTLPPFLTLKN------------------------FQ---------------GLDLGKM-DEDVKWLQTITKLPI 207 (349)
Q Consensus 168 d~~~~~~~p~~~~~~~------------------------~~---------------~~~~~~~-~~~i~~i~~~~~~pv 207 (349)
|.|++|.+|.+++.++ .. +..|+.+ |++|+|||+.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 9999998775332111 00 0346778 999999999999999
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
++|++.++++|++|.++|+|+|+||||||||+++.+++++.|+++++.+ ++|||++|||+++.|++|||++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 59999999999999999999999999999
Q ss_pred chHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018919 288 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 331 (349)
Q Consensus 288 g~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 331 (349)
||||+|+++..|++||+++++.+++||+..|.++|+++++|+++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999999999999999999999999999999999999863
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.9e-74 Score=551.61 Aligned_cols=332 Identities=44% Similarity=0.725 Sum_probs=312.1
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 3 ~~~~~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
+++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|.|+||+|++++++||+|++||++++.||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhC-CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCC
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~-~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~ 161 (349)
.+.||++|.++|++|+++|+++++|+.++.++||+.+.. +++.|||+|.++|++.+.+++++++++|+++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhhcCCCCcCcccccC--------------CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCC
Q 018919 162 LGRREADIKNRFTLPPFLTLKNFQ--------------GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 226 (349)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~--------------~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~ 226 (349)
.|+|++|++++|..|.+....... ...++.+ |++|+|+++.+++||++|++.++++|+.+.++|+
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~ 243 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGA 243 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCC
Confidence 999999999999888433221100 0234567 9999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHH
Q 018919 227 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 306 (349)
Q Consensus 227 d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~ 306 (349)
|+|+|+||||+++++++++++.|+++++++++++|||++|||+++.|++|+|++||++|++||+++|+++..|++||.++
T Consensus 244 d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~ 323 (351)
T cd04737 244 DGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASV 323 (351)
T ss_pred CEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHH
Confidence 99999999999999999999999999998866899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 307 LEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 307 l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
++.+++||+.+|.++|+++++|+++..|
T Consensus 324 l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 324 LEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999987653
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=6.9e-72 Score=537.38 Aligned_cols=322 Identities=52% Similarity=0.785 Sum_probs=293.1
Q ss_pred HHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHH
Q 018919 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (349)
Q Consensus 14 a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~l 93 (349)
||++||+..|+|++||+++|.|+++|+++|++|.|+||+|++++++||+|+|||++++.||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhc
Q 018919 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (349)
Q Consensus 94 a~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~ 173 (349)
|++|+++|+++++|+.++.++|++.+..+++.|+|||.+.|++.+.+++++++++|++++.+|+|+|..++|++|.|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877889999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcccccC---------------------------------CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHH
Q 018919 174 TLPPFLTLKNFQ---------------------------------GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDAR 219 (349)
Q Consensus 174 ~~p~~~~~~~~~---------------------------------~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~ 219 (349)
.+|.+++.++.. ...++.+ |+.|+++++.|++||++|++.++++|+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 888764322210 1246778 999999999999999999999999999
Q ss_pred HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC
Q 018919 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 299 (349)
Q Consensus 220 ~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G 299 (349)
+|.++|+|+|+||||||||+|+++++++.|+++++++++++|||+|||||+|.|++|+|++||++|++||||+|+++..|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999997789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 300 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 300 ~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
++||.++++.|++||+..|.++|+++++||+++.++
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998763
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=3.5e-71 Score=529.31 Aligned_cols=325 Identities=47% Similarity=0.746 Sum_probs=303.6
Q ss_pred HHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCC
Q 018919 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (349)
Q Consensus 8 ~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~ 87 (349)
+|||+.||++||+.+|+|+.||++||+|+++|+.+|++|.|+||+|++++++||+|+|||++++.||++|||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhh-CC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCch
Q 018919 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~-~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r 165 (349)
++|.++|++|.+.|+++++|++++.++|+|.+. .| .+.|||||.++|++.+.+++++++++|+++|++|+|.|..|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred hHHhhhhcCCCCcCcccc-------------cCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEE
Q 018919 166 EADIKNRFTLPPFLTLKN-------------FQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~-------------~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v 231 (349)
++|++++|..|..++.++ .....++.. |+.|+++++.+++||++|++.++++|+.+.++|+|+|+|
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~v 240 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVL 240 (344)
T ss_pred hhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEE
Confidence 999999998876443332 111345666 999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHH
Q 018919 232 SNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLE 308 (349)
Q Consensus 232 ~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~ 308 (349)
+||||++++..+++++.|.++++.+ ++++|||++|||+++.|++|+|++||++|+|||+|++++.+.|++||.++++
T Consensus 241 snhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~ 320 (344)
T cd02922 241 SNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQ 320 (344)
T ss_pred ECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHH
Confidence 9999999998888999999998853 3479999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhhhccc
Q 018919 309 MLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 309 ~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+++||+.+|.++|+++++|++++
T Consensus 321 ~l~~EL~~~m~l~G~~~i~~l~~~ 344 (344)
T cd02922 321 ILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHHHHHHHhCCCCHHHhCcC
Confidence 999999999999999999999753
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=8.7e-65 Score=480.82 Aligned_cols=297 Identities=88% Similarity=1.274 Sum_probs=277.6
Q ss_pred cccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCc
Q 018919 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (349)
Q Consensus 45 ~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~ 124 (349)
-|.|+||+|++++++||+|++||++++.||++||++++.+.||++|.++|++|+++|+++++|+.++.++|||++..+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998876678
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc--------------------
Q 018919 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF-------------------- 184 (349)
Q Consensus 125 ~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~-------------------- 184 (349)
.|||+|..+|++.+.++++|++++|++++++|+|+|+.|+|++|++|+|..|...+.++.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999988865443322
Q ss_pred CCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEE
Q 018919 185 QGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 185 ~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 263 (349)
.+..++.+ |++|+|+|+.|++||++|++.+.++|++|.++|+|+|+|+||||||++++++++++|+++++++.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 01456778 99999999999999999999999999999999999999999999999999999999999999887789999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCCC
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 341 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~ 341 (349)
++|||+++.|++|||++||++|++|||++++++..|++|+.++++.+++||+..|.++|+++++|+.+..+......+
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~ 360 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTP 360 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875554333
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.2e-60 Score=454.63 Aligned_cols=329 Identities=46% Similarity=0.675 Sum_probs=307.4
Q ss_pred hHHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccC
Q 018919 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (349)
Q Consensus 7 ~~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~ 86 (349)
+.|+++.|++++| +.|+|+.+|+++|.|.++|+++|+++.|+|++|.+++++|++|+++|++++.||++|||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3589999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchh
Q 018919 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~ 166 (349)
++++..-+++|..+|.+++.++.+++++|++.+..+ +|+|...+++...+.++++.++|++.+.+|+|.|..+.|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999998876544 9999988999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCcCcccccC------------------------CCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHH
Q 018919 167 ADIKNRFTLPPFLTLKNFQ------------------------GLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIA 221 (349)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~------------------------~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a 221 (349)
+|.++.+..|......+.. .+.+|.. |+++.++++.|..|+++|++.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 9999998777443332210 1467778 99999999999999999999999999999
Q ss_pred HHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHH
Q 018919 222 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 301 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~ 301 (349)
.+.|+|+|.++||||||+|+|++++++|++++++++++++|++|||||+|.|++|||++||++|++||||+++++..|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecccCC
Q 018919 302 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 340 (349)
Q Consensus 302 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~ 340 (349)
||.++++.+++||+..|.++|+++|+||++..++.....
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~~ 354 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGRL 354 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeecccc
Confidence 999999999999999999999999999999988765443
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=2e-58 Score=436.91 Aligned_cols=299 Identities=60% Similarity=0.909 Sum_probs=282.0
Q ss_pred HHHHHHHHHhCCccccccccCCCcchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCC
Q 018919 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (349)
Q Consensus 8 ~d~~~~a~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~ 87 (349)
+||++.|+++||+..|.|+.+|++++.|+++|...|++|+|+||+|++++++||+|+++|++++.||++|||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhH
Q 018919 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~ 167 (349)
+++.+++++|+++|+++++++++..+++++.+..++++|+|+|...+++.+.+.++++++.|+++|++|+|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999888899999887778899999987788989999999999999999999999864322
Q ss_pred HhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHH
Q 018919 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIM 247 (349)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~ 247 (349)
..|+.++++++.+++||++|++.++++|+.+.++|+|+|+++||||++.++++++++
T Consensus 159 -----------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~ 215 (299)
T cd02809 159 -----------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATID 215 (299)
T ss_pred -----------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHH
Confidence 117899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChh
Q 018919 248 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 327 (349)
Q Consensus 248 ~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~ 327 (349)
.+.++++.+++++|||++|||+++.|++|+|++|||+|++||||++++...|.+++.++++.+++||+.+|..+|+++++
T Consensus 216 ~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~ 295 (299)
T cd02809 216 ALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLA 295 (299)
T ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 99999998855799999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred hhcc
Q 018919 328 EITR 331 (349)
Q Consensus 328 ~l~~ 331 (349)
|+++
T Consensus 296 ~l~~ 299 (299)
T cd02809 296 DLDP 299 (299)
T ss_pred HhCc
Confidence 9963
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=8.8e-39 Score=305.59 Aligned_cols=271 Identities=27% Similarity=0.355 Sum_probs=216.6
Q ss_pred HHhhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCC--C--
Q 018919 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--S-- 112 (349)
Q Consensus 39 n~~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~--~-- 112 (349)
+...||+|.|+|+.|+ +.+++||+|+|+|++++.||++|||+|++....+.+..+|++|+++|+++++++.+. .
T Consensus 18 ~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 97 (326)
T cd02811 18 GSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDP 97 (326)
T ss_pred CCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccCh
Confidence 5567999999999998 789999999999999999999999998754344457899999999999999988742 1
Q ss_pred ----CHHHHHhhCC-CceEEEEeecCChh-HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC
Q 018919 113 ----SVEEVASTGP-GIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (349)
Q Consensus 113 ----~~e~i~~~~~-~~~~~Ql~~~~~~~-~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (349)
+++.+++..+ .+++.+++...... ...+..+.++..+++++++|++++.. ...|.
T Consensus 98 e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~----------~~~~~--------- 158 (326)
T cd02811 98 ELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQE----------AVQPE--------- 158 (326)
T ss_pred hhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHh----------hcCCC---------
Confidence 2233455555 66666665533111 12223334455689999999976421 11121
Q ss_pred CCCCch---HHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCC---------C-----------CC
Q 018919 187 LDLGKM---DEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR---------Q-----------LD 240 (349)
Q Consensus 187 ~~~~~~---~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~---------~-----------~~ 240 (349)
.+.++ .+.|+++++.+++||++|.+ .+.++|+.+.++|+|+|+++++||+ + .+
T Consensus 159 -~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~ 237 (326)
T cd02811 159 -GDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFAD 237 (326)
T ss_pred -CCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCccccccccccccccccccccccc
Confidence 12233 37799999999999999998 7899999999999999999999884 1 12
Q ss_pred CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 018919 241 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMAL 320 (349)
Q Consensus 241 ~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~ 320 (349)
++.++...+.++++++. ++|||++|||+++.|++|+|++|||+|++||+|++++.. |.+++.++++.+.+||+.+|.+
T Consensus 238 ~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~ 315 (326)
T cd02811 238 WGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFL 315 (326)
T ss_pred ccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888764 799999999999999999999999999999999998776 9999999999999999999999
Q ss_pred cCCCChhhhcc
Q 018919 321 SGCRSLKEITR 331 (349)
Q Consensus 321 ~G~~~i~~l~~ 331 (349)
+|+++++|+++
T Consensus 316 ~G~~si~el~~ 326 (326)
T cd02811 316 TGAKNLAELKQ 326 (326)
T ss_pred hCCCCHHHhcC
Confidence 99999999963
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=1.2e-38 Score=307.11 Aligned_cols=277 Identities=25% Similarity=0.349 Sum_probs=224.8
Q ss_pred hhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCC--C----
Q 018919 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--S---- 112 (349)
Q Consensus 41 ~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~--~---- 112 (349)
..||+|+|+|+.|. +.+++||+|+|+|.+++.||+++||+|++-...+.+.+|+++|+++|+++++|+++. .
T Consensus 28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~ 107 (352)
T PRK05437 28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPEL 107 (352)
T ss_pred CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhh
Confidence 46999999999997 788999999999999999999999998763333456899999999999999998752 1
Q ss_pred --CHHHHHhhCC-CceEEEEeecCChhHH-HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCC
Q 018919 113 --SVEEVASTGP-GIRFFQLYVYKDRNVV-AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (349)
Q Consensus 113 --~~e~i~~~~~-~~~~~Ql~~~~~~~~~-~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (349)
+.+.+++..| .+++.+|+........ .+..+.++..++++++++++++.. ...|. .
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe----------~~~p~----------g 167 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE----------LVQPE----------G 167 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh----------hcCCC----------C
Confidence 2223455555 6677777664332332 233444555689999999987531 11121 1
Q ss_pred CCch---HHHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCC---------C---------CCCchh
Q 018919 189 LGKM---DEDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR---------Q---------LDYVPA 244 (349)
Q Consensus 189 ~~~~---~~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~---------~---------~~~~~~ 244 (349)
+.++ .+.++++++.+++||++|.+ .+.++|+.+.++|+|+|+|+|+||+ . .+++.+
T Consensus 168 ~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p 247 (352)
T PRK05437 168 DRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP 247 (352)
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC
Confidence 2233 37799999999999999998 7899999999999999999999873 2 135778
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
+.+.|.++++.+ .++|||++|||+++.|+.|+|++|||+|++||+|++++...|.+++.++++.+.+||+.+|..+|++
T Consensus 248 t~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~ 326 (352)
T PRK05437 248 TAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAK 326 (352)
T ss_pred HHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 889999998874 3799999999999999999999999999999999999888899999999999999999999999999
Q ss_pred Chhhhcccceeccc
Q 018919 325 SLKEITRDHIVTEW 338 (349)
Q Consensus 325 ~i~~l~~~~l~~~~ 338 (349)
+++||++..+...+
T Consensus 327 ~i~eL~~~~~~~~~ 340 (352)
T PRK05437 327 NIAELRKVPLVLSG 340 (352)
T ss_pred CHHHhCCCCEEecH
Confidence 99999988876543
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=2.2e-37 Score=296.79 Aligned_cols=275 Identities=25% Similarity=0.345 Sum_probs=216.9
Q ss_pred hhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC------
Q 018919 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------ 112 (349)
Q Consensus 41 ~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~------ 112 (349)
..||+|+|+|..|. +.+++||||+|+|++++.||+++||+|++......+..++++|++.|+++++++.+..
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 35999999999996 6789999999999999999999999886532334467999999999999999877521
Q ss_pred --CHHHHHhhCC-CceEEEEeecCChhH-HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCC
Q 018919 113 --SVEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (349)
Q Consensus 113 --~~e~i~~~~~-~~~~~Ql~~~~~~~~-~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (349)
+.+.+++..+ .+++.+++.....+. ..+..+.++..+++++++|++++.. ...|. .
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------~~~p~----------g 160 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------LVQPE----------G 160 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------ccCCC----------C
Confidence 1223444345 566666654322111 3334444455689999999987531 11122 1
Q ss_pred CCch--H-HHHHHHHHhcCCcEEEEEe---cCHHHHHHHHHcCCCEEEEecCCCCC------------------CCCchh
Q 018919 189 LGKM--D-EDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ------------------LDYVPA 244 (349)
Q Consensus 189 ~~~~--~-~~i~~i~~~~~~pv~vK~v---~~~~~a~~a~~~G~d~I~v~~~gg~~------------------~~~~~~ 244 (349)
+..| | +.++++++.+++||++|.+ .+.+.|+.+.++|+|+|+++++||+. .+++.+
T Consensus 161 ~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~ 240 (333)
T TIGR02151 161 DRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIP 240 (333)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHh
Confidence 3333 3 7799999999999999998 78999999999999999999988753 123566
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
+.+.+.++++ +..++|||++|||+++.|+.|+|++|||+|++||+|+..+...|++++.++++.+.+||+.+|.++|++
T Consensus 241 t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~ 319 (333)
T TIGR02151 241 TAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAK 319 (333)
T ss_pred HHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7778888776 223799999999999999999999999999999999998777899999999999999999999999999
Q ss_pred Chhhhcccceec
Q 018919 325 SLKEITRDHIVT 336 (349)
Q Consensus 325 ~i~~l~~~~l~~ 336 (349)
+++||++..+..
T Consensus 320 ~i~el~~~~~~~ 331 (333)
T TIGR02151 320 TIAELKKVPLVI 331 (333)
T ss_pred CHHHHccCCeEe
Confidence 999999887643
No 17
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.97 E-value=4.7e-30 Score=242.86 Aligned_cols=253 Identities=19% Similarity=0.246 Sum_probs=197.3
Q ss_pred hcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH-
Q 018919 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (349)
Q Consensus 42 ~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~- 118 (349)
.||++.|+|..++ +++++|++|+|+|++++.||++++|.. ..|..||+.|++.|...++.-+ ++|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 5999999999886 567999999999999999999999942 5688999999999999888653 455533
Q ss_pred ---hhCCCceEEEEeecCChhHHHHHHHHHHHcCC--CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-
Q 018919 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM- 192 (349)
Q Consensus 119 ---~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~--~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~- 192 (349)
+.++...++.+-...+++ ..+.++.+.++|+ ++|.|+...+ +...
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~-~~~~~~~Lv~ag~~~d~i~iD~a~g----------------------------h~~~~ 127 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDD-EYDFVDQLAAEGLTPEYITIDIAHG----------------------------HSDSV 127 (326)
T ss_pred HHHhccccccEEEEEecCCHH-HHHHHHHHHhcCCCCCEEEEECCCC----------------------------chHHH
Confidence 333432345544433333 3456667777855 9887654322 1222
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC------Cchh--hHHHHHHHHHHhcCCCcEE
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPA--TIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~------~~~~--~~~~l~~i~~~~~~~ipvi 263 (349)
.+.|+++|+.++ .||++|.+.+.++++.+.++|+|+|.++++||++.. .+.+ .+..+.++++.+ ++|||
T Consensus 128 ~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVI 205 (326)
T PRK05458 128 INMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPII 205 (326)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEE
Confidence 577999999995 889988899999999999999999999999996521 2345 455688888876 79999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHh---h-------cCHH-------HHHHH
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLA---A-------EGEK-------GVRRV 306 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~---~-------~G~~-------gv~~~ 306 (349)
++|||+++.|++|||++||++||+|++|+ ++.. . .|.+ .+.++
T Consensus 206 AdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~ 285 (326)
T PRK05458 206 ADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDT 285 (326)
T ss_pred EeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHH
Confidence 99999999999999999999999999997 1110 1 2323 47889
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 307 LEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 307 l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
+..+..+|+..|.++|+++++||++..+
T Consensus 286 l~~l~~gLr~~m~~~Ga~~i~el~~~~~ 313 (326)
T PRK05458 286 LTEMEQDLQSSISYAGGRDLDAIRKVDY 313 (326)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHhcCCE
Confidence 9999999999999999999999996543
No 18
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.97 E-value=3.2e-30 Score=242.98 Aligned_cols=255 Identities=20% Similarity=0.236 Sum_probs=195.2
Q ss_pred hhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|..++ +++++|++|+|+|++++.||++++|.. ..|..||++|++.|...++..+ ++|+..
T Consensus 2 ~~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~ 72 (321)
T TIGR01306 2 FDYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRI 72 (321)
T ss_pred CCcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHH
Confidence 37999999999886 467999999999999999999999942 5688999999999999998763 455533
Q ss_pred ----hhCCCceEEEEeecCChhHHHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 119 ----STGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 119 ----~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G--~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
+.++....+.+-....++. .+.++.+.++| ++.++++. .+ .+...
T Consensus 73 sfvrk~k~~~L~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~--ah--------------------------g~s~~ 123 (321)
T TIGR01306 73 PFIKDMQERGLFASISVGVKACE-YEFVTQLAEEALTPEYITIDI--AH--------------------------GHSNS 123 (321)
T ss_pred HHHHhccccccEEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeC--cc--------------------------CchHH
Confidence 3333222333333333332 35566667777 58777544 21 12333
Q ss_pred -HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecCCCCCC--------CCchhhHHHHHHHHHHhcCCCcE
Q 018919 193 -DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVPATIMALEEVVKATQGRIPV 262 (349)
Q Consensus 193 -~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~gg~~~--------~~~~~~~~~l~~i~~~~~~~ipv 262 (349)
++.++++|+.++.|+++|+ +.+.++|+.+.++|||+|.|++++|+.. ..+.+.+.++.++++++ ++||
T Consensus 124 ~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pV 201 (321)
T TIGR01306 124 VINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPI 201 (321)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeE
Confidence 7889999999988855555 9999999999999999999998777532 22234678899998877 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh---cC-------H-------HHHHH
Q 018919 263 FLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---EG-------E-------KGVRR 305 (349)
Q Consensus 263 ia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~---~G-------~-------~gv~~ 305 (349)
|++|||+++.|++|||++|||+||+|++|- ++... .| . -.+.+
T Consensus 202 IadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~ 281 (321)
T TIGR01306 202 IADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSD 281 (321)
T ss_pred EEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHH
Confidence 999999999999999999999999999882 22210 01 0 12788
Q ss_pred HHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 306 VLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 306 ~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
++..+...|+..|.++|+++++||++..+.
T Consensus 282 ~~~~~~~glr~~~~~~G~~~l~~~~~~~~~ 311 (321)
T TIGR01306 282 TLIEMQQDLQSSISYAGGKDLDSLRTVDYV 311 (321)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHhhCCEE
Confidence 999999999999999999999999976554
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.97 E-value=1.1e-29 Score=237.36 Aligned_cols=255 Identities=22% Similarity=0.271 Sum_probs=196.1
Q ss_pred hhcccccccccc--cCCCCCCCcceeEcCe-----ecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCC
Q 018919 41 NAFSRILFRPRI--LIDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (349)
Q Consensus 41 ~~~~~~~l~p~~--l~~~~~~d~s~~l~g~-----~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~ 113 (349)
.+||++.|+|+. +.+.+++|++++|..+ .+..||+.|.|... ++..||.+.++.|..+++.-+ .+
T Consensus 8 l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk~--~~ 79 (343)
T TIGR01305 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHKH--YS 79 (343)
T ss_pred CCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEeeC--CC
Confidence 479999999974 4567899999999744 78999999999764 477999999999999999653 45
Q ss_pred HHHHHh----hCCC-ceEEEEeecCChhHHHHHHHHHHHc--CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC
Q 018919 114 VEEVAS----TGPG-IRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (349)
Q Consensus 114 ~e~i~~----~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~~--G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (349)
+|+..+ ..+. ...+-+... -.+...+.++.+.++ ++|+|+|++..
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG-~~~~d~er~~~L~~a~~~~d~iviD~Ah--------------------------- 131 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSG-SSDNDLEKMTSILEAVPQLKFICLDVAN--------------------------- 131 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEec-cCHHHHHHHHHHHhcCCCCCEEEEECCC---------------------------
Confidence 665432 2221 111111222 223334566677776 48888765432
Q ss_pred CCCCch-HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe-----cCCCCCCCCch-hhHHHHHHHHHHhcC
Q 018919 187 LDLGKM-DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLDYVP-ATIMALEEVVKATQG 258 (349)
Q Consensus 187 ~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~-----~~gg~~~~~~~-~~~~~l~~i~~~~~~ 258 (349)
.+... .+.|+|+|+.|+.+.++|+ +.++|+|+.++++|||+|.|+ +|++|+.++.. |+++++.+++++.++
T Consensus 132 -Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~ 210 (343)
T TIGR01305 132 -GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHG 210 (343)
T ss_pred -CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhcc
Confidence 12333 7889999999976777777 999999999999999999998 78888887754 899999999999876
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh-------c----------CH
Q 018919 259 -RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------E----------GE 300 (349)
Q Consensus 259 -~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~-------~----------G~ 300 (349)
++|||+||||+++.|++|||++|||+||+|+.+. +++++ . |.
T Consensus 211 ~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~ 290 (343)
T TIGR01305 211 LKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGK 290 (343)
T ss_pred CCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCc
Confidence 7999999999999999999999999999998662 22211 0 10
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 301 -------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 301 -------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
-.+.+++..+...|+..|.++|..+|+||++.
T Consensus 291 e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 291 TVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred eEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 03788999999999999999999999999654
No 20
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.96 E-value=2.2e-27 Score=229.06 Aligned_cols=266 Identities=20% Similarity=0.249 Sum_probs=191.9
Q ss_pred hhcccccccccccC--CCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC----CCCCH
Q 018919 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSV 114 (349)
Q Consensus 41 ~~~~~~~l~p~~l~--~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~----~~~~~ 114 (349)
.+||++.|+|. +. +.+++|+++.+.+..+..||+++||++.+ +..|+.+++++|..++++.. ...+.
T Consensus 16 ~~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~ 88 (368)
T PRK08649 16 YGLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDP 88 (368)
T ss_pred CCcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCH
Confidence 37999999998 43 56799999999999999999999998754 66999999999998787621 12234
Q ss_pred HHHHh----hCC------------Cce---------------EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 115 EEVAS----TGP------------GIR---------------FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 115 e~i~~----~~~------------~~~---------------~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
+++.+ ..+ .|+ .+.+....++....+.++.+.++|++++.++..+..
T Consensus 89 e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~-- 166 (368)
T PRK08649 89 EPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVS-- 166 (368)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchh--
Confidence 43322 100 111 111111113334567777888888888887653210
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC-----
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----- 237 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----- 237 (349)
- .+ .... .|..+.++++..++||+++.+.+.++|+.++++|||+|.+..++|+
T Consensus 167 -----~--~h--------------~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~ 225 (368)
T PRK08649 167 -----A--EH--------------VSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSR 225 (368)
T ss_pred -----h--hc--------------cCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCc
Confidence 0 00 1122 2666666666689999998899999999999999999998644442
Q ss_pred -CCCCchhhHHHHHHHHHHhc--------CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCH--------
Q 018919 238 -QLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE-------- 300 (349)
Q Consensus 238 -~~~~~~~~~~~l~~i~~~~~--------~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~-------- 300 (349)
....+.|++.++.+++++.+ .++|||++|||+++.|++|||++|||+||+|++|.....+.|.
T Consensus 226 ~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s 305 (368)
T PRK08649 226 GVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAA 305 (368)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCccc
Confidence 12236778888888765421 1599999999999999999999999999999999653322111
Q ss_pred ----------------HHHHHHHH----------HHHHHHHHHHHHcCCCChhhhcccceec
Q 018919 301 ----------------KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 301 ----------------~gv~~~l~----------~l~~el~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
-.+++++. .+...|+..|.++|+.+|+||++..+..
T Consensus 306 ~~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 306 PHPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CCCcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 13777877 9999999999999999999999876653
No 21
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.96 E-value=5.4e-27 Score=224.09 Aligned_cols=256 Identities=24% Similarity=0.311 Sum_probs=196.0
Q ss_pred hhccccccccccc-CCCCCCCcceeEcC-eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~g-~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... .+.+++|++|+|.+ +.++.||+.|||.+.+ +..|+.+++++|..+++... .++++..
T Consensus 2 ~~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~~--~~~~~~~ 73 (325)
T cd00381 2 LTFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHRN--MSIEEQA 73 (325)
T ss_pred CCcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeCC--CCHHHHH
Confidence 3699999999865 46789999999988 8899999999998764 66899999999998888643 3455543
Q ss_pred h----hCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-H
Q 018919 119 S----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-D 193 (349)
Q Consensus 119 ~----~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~ 193 (349)
+ ........+... .+ +...+.++.+.++|++.|+++.... ++.. .
T Consensus 74 ~~i~~vk~~l~v~~~~~-~~-~~~~~~~~~l~eagv~~I~vd~~~G----------------------------~~~~~~ 123 (325)
T cd00381 74 EEVRKVKGRLLVGAAVG-TR-EDDKERAEALVEAGVDVIVIDSAHG----------------------------HSVYVI 123 (325)
T ss_pred HHHHHhccCceEEEecC-CC-hhHHHHHHHHHhcCCCEEEEECCCC----------------------------CcHHHH
Confidence 2 222222333332 22 2345677788889999998765321 1222 5
Q ss_pred HHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC------CCCCchhhHHHHHHHHHHhcC-CCcEEEe
Q 018919 194 EDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVFLD 265 (349)
Q Consensus 194 ~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~------~~~~~~~~~~~l~~i~~~~~~-~ipvia~ 265 (349)
+.++++++..+ +||++..+.+.+.|+.+.++|+|+|++...+|. ....+.+++..+.++.+++.. ++|||++
T Consensus 124 ~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~ 203 (325)
T cd00381 124 EMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIAD 203 (325)
T ss_pred HHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEec
Confidence 77999998874 899988899999999999999999999543321 134577889999998887643 6999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhc------------------------------------------C----
Q 018919 266 GGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------------------------------------G---- 299 (349)
Q Consensus 266 GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~------------------------------------------G---- 299 (349)
|||+++.|++|+|++||++||+||.|.-...+. |
T Consensus 204 GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eg~~~~ 283 (325)
T cd00381 204 GGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEGVEGI 283 (325)
T ss_pred CCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccCCceEEE
Confidence 999999999999999999999999986322110 1
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 300 ---EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 300 ---~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
.-.+.+.+..+...|+..|.++|+.+|+||++...
T Consensus 284 v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 284 VPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred EecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 01378899999999999999999999999997654
No 22
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.95 E-value=1.6e-27 Score=229.33 Aligned_cols=271 Identities=20% Similarity=0.259 Sum_probs=188.0
Q ss_pred HHHHHHhhccccccccc-ccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC----
Q 018919 35 TLQENRNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---- 109 (349)
Q Consensus 35 t~~~n~~~~~~~~l~p~-~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---- 109 (349)
+.|+ ...||+|.|+|. ..++.+++||++++.+.+++.||++|||++.+ +.+|+.+++++|.+.+++..
T Consensus 8 ~~~~-~~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~ 80 (369)
T TIGR01304 8 TARR-TYSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWG 80 (369)
T ss_pred cccc-cCCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHh
Confidence 3344 348999999996 55788899999999999999999999999865 66999999999997777631
Q ss_pred CCCCHHH----HHhhCCCc-------eEEEE------------------------eecCChhHHHHHHHHHHHcCCCEEE
Q 018919 110 STSSVEE----VASTGPGI-------RFFQL------------------------YVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 110 ~~~~~e~----i~~~~~~~-------~~~Ql------------------------~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
.....+. +......+ ...++ ....++....+.++.++++|++.+.
T Consensus 81 ~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ 160 (369)
T TIGR01304 81 RHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLV 160 (369)
T ss_pred cCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEE
Confidence 1112221 11100000 00000 0111222344566666667777766
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC-chHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG-KMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++-.. ++ ..+ ... ..|..+.++++..++||+++++.+.++|+.+.++|||+|.++.
T Consensus 161 ihgrt-------~~--q~~--------------~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 161 IQGTL-------VS--AEH--------------VSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred Eeccc-------hh--hhc--------------cCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence 54211 00 000 011 1277888888888999999889999999999999999999554
Q ss_pred CCCCC----CCCchhhHHHHHHHHHHh-------c-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCH-
Q 018919 234 HGARQ----LDYVPATIMALEEVVKAT-------Q-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE- 300 (349)
Q Consensus 234 ~gg~~----~~~~~~~~~~l~~i~~~~-------~-~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~- 300 (349)
+|+.. +..+.++...+.+++.+. + ..+|||++|||+++.|++|+|++|||+||+|++|+....+.|.
T Consensus 218 gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~ 297 (369)
T TIGR01304 218 GGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRG 297 (369)
T ss_pred CCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCC
Confidence 44322 223566777777776442 1 1499999999999999999999999999999999865533211
Q ss_pred ----------------------HH----HHHHH----------HHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 301 ----------------------KG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 301 ----------------------~g----v~~~l----------~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
.| +++++ ..+...|++.|..+|+++++|+++..+.
T Consensus 298 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 298 YFWPAAAAHPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred CccchhhcCccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 12 55554 4688999999999999999999987653
No 23
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.95 E-value=3.7e-26 Score=223.51 Aligned_cols=268 Identities=25% Similarity=0.254 Sum_probs=187.2
Q ss_pred CCcceeEcC-----eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecC
Q 018919 59 IDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133 (349)
Q Consensus 59 ~d~s~~l~g-----~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~ 133 (349)
++.++.+++ ..+..||+++||+++.+ .++...+++.+++++|+.+++++.. .+.+++.... ....|+- ..
T Consensus 60 ~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~--~~i~q~~-~~ 134 (392)
T cd02808 60 VDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGGG--DIIKQVA-SG 134 (392)
T ss_pred cccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhh--heEEEec-CC
Confidence 344666654 35578999999998775 4456679999999999999888754 4666664332 2445541 11
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCC---CCc-----h-hHHhhhhcCCCCcCcc---cccCCCCCCch-HHHHHHHH
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPR---LGR-----R-EADIKNRFTLPPFLTL---KNFQGLDLGKM-DEDVKWLQ 200 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~---~g~-----r-~~d~~~~~~~p~~~~~---~~~~~~~~~~~-~~~i~~i~ 200 (349)
......+..+ .+++|++.+..-. .|- + ..++.....++.+... +....+.+++. .+.++++|
T Consensus 135 ~fGv~~~~~~-----~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr 209 (392)
T cd02808 135 RFGVRPEYLN-----KADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLR 209 (392)
T ss_pred CCccCHHHcc-----cCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 1111111221 1677777765211 110 0 0111111112221111 11111233333 56799999
Q ss_pred HhcC-CcEEEEEecC--HHHHHHHHHcC-CCEEEEecCCCCC--------CCCchhhHHHHHHHHHHh-----cCCCcEE
Q 018919 201 TITK-LPILVKGVLT--AEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEEVVKAT-----QGRIPVF 263 (349)
Q Consensus 201 ~~~~-~pv~vK~v~~--~~~a~~a~~~G-~d~I~v~~~gg~~--------~~~~~~~~~~l~~i~~~~-----~~~ipvi 263 (349)
+.++ +||++|++.. .+++..+.+.| +|+|+|+|++|.+ .+++.|+...|.++++++ +.++|||
T Consensus 210 ~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~vi 289 (392)
T cd02808 210 EATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLI 289 (392)
T ss_pred HhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEE
Confidence 9998 9999999864 66666666655 9999999996532 346788899999998876 2479999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhc-----------------------------CHHHHHHHHHHHHHHH
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEF 314 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~-----------------------------G~~gv~~~l~~l~~el 314 (349)
++|||+++.|++|+|++|||+|++||+|+++++|. |.++|.++++.+.+||
T Consensus 290 asGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el 369 (392)
T cd02808 290 ASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEEL 369 (392)
T ss_pred EECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654 7789999999999999
Q ss_pred HHHHHHcCCCChhhhcccceec
Q 018919 315 ELAMALSGCRSLKEITRDHIVT 336 (349)
Q Consensus 315 ~~~m~~~G~~~i~~l~~~~l~~ 336 (349)
+.+|..+|+.++++++++++..
T Consensus 370 ~~~m~~~G~~~~~~l~~~~l~~ 391 (392)
T cd02808 370 RELAAALGKRSLELLGRSDLLA 391 (392)
T ss_pred HHHHHHhCCCChHHCCHHHhhc
Confidence 9999999999999999887743
No 24
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.95 E-value=1.8e-26 Score=219.55 Aligned_cols=256 Identities=23% Similarity=0.322 Sum_probs=184.8
Q ss_pred hhccccccccccc---CCCCCCCcceeE-cCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHH
Q 018919 41 NAFSRILFRPRIL---IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (349)
Q Consensus 41 ~~~~~~~l~p~~l---~~~~~~d~s~~l-~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~ 116 (349)
.+||++.|+|... ++..++|+++.+ .+.+++.||+.|||...+ +..||.+.++.|..+++.-+ .++|+
T Consensus 3 ltfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~~--~~~e~ 74 (352)
T PF00478_consen 3 LTFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHRN--MSIEE 74 (352)
T ss_dssp --GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEESS--SCHHH
T ss_pred CccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecCC--CCHHH
Confidence 3699999999864 456677777666 679999999999997654 77999999999999998644 45544
Q ss_pred H-------HhhCC-------CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc
Q 018919 117 V-------ASTGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (349)
Q Consensus 117 i-------~~~~~-------~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~ 182 (349)
. ++..| +...+-..... .+...+.++.+.++|+|.|+|+...
T Consensus 75 q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~-~~~~~er~~~L~~agvD~ivID~a~----------------------- 130 (352)
T PF00478_consen 75 QAEEVKKVKRYYPNASKDEKGRLLVAAAVGT-RDDDFERAEALVEAGVDVIVIDSAH----------------------- 130 (352)
T ss_dssp HHHHHHHHHTHHTTHHBHTTSCBCEEEEEES-STCHHHHHHHHHHTT-SEEEEE-SS-----------------------
T ss_pred HHHHHhhhccccccccccccccceEEEEecC-CHHHHHHHHHHHHcCCCEEEccccC-----------------------
Confidence 2 22111 12222222221 2223567777888999999875432
Q ss_pred ccCCCCCCch-HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHH
Q 018919 183 NFQGLDLGKM-DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVK 254 (349)
Q Consensus 183 ~~~~~~~~~~-~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~ 254 (349)
.+... .+.++++|+.++ +||++..+.|.+.++.+.++|||+|.|.-.+|.- ...|.|++.++.++++
T Consensus 131 -----g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~ 205 (352)
T PF00478_consen 131 -----GHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAE 205 (352)
T ss_dssp -----TTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHH
Confidence 12333 678999999995 9999999999999999999999999997655542 2347789999999988
Q ss_pred HhcC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh----------------
Q 018919 255 ATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---------------- 297 (349)
Q Consensus 255 ~~~~-~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~---------------- 297 (349)
+.++ .+|||+||||+++.|++|||++|||+||+|+.|- +++++
T Consensus 206 ~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~ 285 (352)
T PF00478_consen 206 AARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQ 285 (352)
T ss_dssp HHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTS
T ss_pred HhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhccc
Confidence 7643 7999999999999999999999999999999772 11110
Q ss_pred --------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 298 --------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 298 --------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
+|. -.+.+++..|...|+..|.++|..+|+||++..
T Consensus 286 ~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 286 AEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp STSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 111 137899999999999999999999999999764
No 25
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.95 E-value=2.9e-26 Score=222.05 Aligned_cols=255 Identities=20% Similarity=0.262 Sum_probs=190.7
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... ...+++|++|.+. .+.+..||+.|||++.+ +..||.+.+++|..++++. ..++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 4799999999865 3567899999885 56778999999998754 5689999999999999974 35566542
Q ss_pred hh----CC----CceE------------------E------------------------EEee----cCChhHHHHHHHH
Q 018919 119 ST----GP----GIRF------------------F------------------------QLYV----YKDRNVVAQLVRR 144 (349)
Q Consensus 119 ~~----~~----~~~~------------------~------------------------Ql~~----~~~~~~~~~~~~~ 144 (349)
+. .. .... + ||.. ..++ .+.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~-~~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDI-DTIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCH-HHHHHHHH
Confidence 21 10 0000 0 0111 1122 25678888
Q ss_pred HHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHH
Q 018919 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAV 222 (349)
Q Consensus 145 ~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~ 222 (349)
+.++|+|.|.|+...+ ++.. ++.++++|+++ +++|+++++.+.++++.+.
T Consensus 161 lv~aGvDvI~iD~a~g----------------------------~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~ 212 (404)
T PRK06843 161 LVKAHVDILVIDSAHG----------------------------HSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLI 212 (404)
T ss_pred HHhcCCCEEEEECCCC----------------------------CChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHH
Confidence 8899999988644321 1223 67899999998 7899999999999999999
Q ss_pred HcCCCEEEEecCCC-----CCCC-CchhhHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH--
Q 018919 223 QAGAAGIIVSNHGA-----RQLD-YVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY-- 293 (349)
Q Consensus 223 ~~G~d~I~v~~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~-- 293 (349)
++|+|+|.++...| +..+ .|.|++..+.++.+.+. .++|||++|||+++.|++|||++||++||+|++|.-
T Consensus 213 ~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~ 292 (404)
T PRK06843 213 SVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTK 292 (404)
T ss_pred HcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeee
Confidence 99999999864333 3333 36678888877776653 269999999999999999999999999999998842
Q ss_pred ------------------HHhh-----cC-----------------HH----------HHHHHHHHHHHHHHHHHHHcCC
Q 018919 294 ------------------SLAA-----EG-----------------EK----------GVRRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 294 ------------------~~~~-----~G-----------------~~----------gv~~~l~~l~~el~~~m~~~G~ 323 (349)
++++ .| ++ .+.+++..+...|+..|.++|+
T Consensus 293 Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga 372 (404)
T PRK06843 293 ESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGA 372 (404)
T ss_pred cCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCC
Confidence 2211 00 01 1788999999999999999999
Q ss_pred CChhhhccc
Q 018919 324 RSLKEITRD 332 (349)
Q Consensus 324 ~~i~~l~~~ 332 (349)
.+|.||+..
T Consensus 373 ~~i~el~~~ 381 (404)
T PRK06843 373 ATISDLKIN 381 (404)
T ss_pred CcHHHHHhc
Confidence 999999854
No 26
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.95 E-value=9.1e-26 Score=211.03 Aligned_cols=255 Identities=19% Similarity=0.215 Sum_probs=191.6
Q ss_pred hhccccccccccc--CCCCCCCcceeEc-----CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCC
Q 018919 41 NAFSRILFRPRIL--IDVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (349)
Q Consensus 41 ~~~~~~~l~p~~l--~~~~~~d~s~~l~-----g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~ 113 (349)
.+||++.|+|+.. .+.+++|++.+|. ...+..||+.|+|... ++..||.+.++.|..+++.-+ .+
T Consensus 9 l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk~--~~ 80 (346)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHKH--YS 80 (346)
T ss_pred CCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEecC--CC
Confidence 4799999999744 4667999988875 3456799999999764 477999999999999999643 45
Q ss_pred HHHHHh----hCCC-ceEEEEeecCChhHHHHHHHHHHH--cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC
Q 018919 114 VEEVAS----TGPG-IRFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (349)
Q Consensus 114 ~e~i~~----~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~--~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (349)
+|+..+ ..+. ...+-+.....+ ...+.++.+.+ +|+|+|+|++..-
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~vavG~~~-~d~er~~~L~~~~~g~D~iviD~AhG-------------------------- 133 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMVSTGTSD-ADFEKTKQILALSPALNFICIDVANG-------------------------- 133 (346)
T ss_pred HHHHHHHHHhccccccceEEEEecCCH-HHHHHHHHHHhcCCCCCEEEEECCCC--------------------------
Confidence 766443 2221 111111222222 33455666666 5899988655321
Q ss_pred CCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC
Q 018919 187 LDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG 258 (349)
Q Consensus 187 ~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~ 258 (349)
+... .+.|+++|+.+ +++|++..+.|+|.++.++++|||+|.|.-..|.- ...|.|++.++.+++++.+.
T Consensus 134 --hs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~ 211 (346)
T PRK05096 134 --YSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHG 211 (346)
T ss_pred --cHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHH
Confidence 2233 68899999998 68999999999999999999999999997555531 23467899999999887643
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh-------cC-------HH--
Q 018919 259 -RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------EG-------EK-- 301 (349)
Q Consensus 259 -~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~-------~G-------~~-- 301 (349)
.+|||+||||++..|++|||++|||+||+|+.|- +++++ .| ++
T Consensus 212 ~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~ 291 (346)
T PRK05096 212 LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGK 291 (346)
T ss_pred cCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCc
Confidence 6999999999999999999999999999999882 22221 01 01
Q ss_pred --------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 302 --------GVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 302 --------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+.+++..+...|+..|.++|..+|+||++.
T Consensus 292 ~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 292 TVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred eEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 2788999999999999999999999999654
No 27
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.93 E-value=1.2e-23 Score=201.26 Aligned_cols=238 Identities=19% Similarity=0.232 Sum_probs=173.2
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC--------------------------
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~-------------------------- 112 (349)
|++|+++|+++.+||++|.-+.. .+....+.+...|..+++. |.+..
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLS------RNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCC------CCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 67999999999999999753321 1334455577777776642 21100
Q ss_pred --------CH----HHHHhhC---CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC
Q 018919 113 --------SV----EEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (349)
Q Consensus 113 --------~~----e~i~~~~---~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~ 177 (349)
.+ +++.+.. ..+.++|+.. .+.+.+.+.++.++++|+++++||++||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 11 1222211 2467889865 5677788999999999999999999985310 1
Q ss_pred cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC----HHHHHHHHHcCCCEEEEecCCC-CCCC-----------
Q 018919 178 FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGA-RQLD----------- 240 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~----~~~a~~a~~~G~d~I~v~~~gg-~~~~----------- 240 (349)
+ ... ...++. .+.++++++.+++||++|+..+ .+.++.+.++|+|+|+++|+.. ...+
T Consensus 141 ~--~~g---~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~g 215 (325)
T cd04739 141 D--ISG---AEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLL 215 (325)
T ss_pred C--ccc---chHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCC
Confidence 0 000 001223 5779999999999999998754 3678889999999999998742 1111
Q ss_pred -Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 241 -YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 241 -~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
+|+ -.++.+.++++.+ ++|||++|||+|++|+.++|.+||++||+||++++ .|+ .++..+.+||+
T Consensus 216 lSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~ 285 (325)
T cd04739 216 LSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR----HGP----DYIGTLLAGLE 285 (325)
T ss_pred cCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh----cCc----hHHHHHHHHHH
Confidence 121 2456667776655 79999999999999999999999999999999986 355 37888999999
Q ss_pred HHHHHcCCCChhhhccc
Q 018919 316 LAMALSGCRSLKEITRD 332 (349)
Q Consensus 316 ~~m~~~G~~~i~~l~~~ 332 (349)
.+|...|+++++|+++.
T Consensus 286 ~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 286 AWMEEHGYESVQQLRGS 302 (325)
T ss_pred HHHHHcCCCCHHHHhcc
Confidence 99999999999999884
No 28
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.93 E-value=8.9e-24 Score=200.44 Aligned_cols=237 Identities=22% Similarity=0.292 Sum_probs=173.4
Q ss_pred cceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCC--------------------------CCC
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------TSS 113 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~--------------------------~~~ 113 (349)
++|+++|+++++||++||...+. +....+.+.+.|..+++. +.. +..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~------~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS------GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC------CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 47899999999999999942211 223344455558777665 111 112
Q ss_pred HHH----HHhh---CCCceEEEEeecCChhHHHHHHHHHHHc--CCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc
Q 018919 114 VEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (349)
Q Consensus 114 ~e~----i~~~---~~~~~~~Ql~~~~~~~~~~~~~~~~~~~--G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (349)
.+. +... .+.+.++|++. .+++.+.+.++.++++ +++++++|+.||.... + +..-
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~--------~------g~~l- 138 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG--------G------GIAI- 138 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCC--------C------cccc-
Confidence 222 2211 12468899986 5788888889998876 3999999999996411 0 0000
Q ss_pred CCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC-CCCCC---------------CCch
Q 018919 185 QGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQL---------------DYVP 243 (349)
Q Consensus 185 ~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~-gg~~~---------------~~~~ 243 (349)
..++++ .+.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+ .++.. ..|+
T Consensus 139 --~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~ 216 (300)
T TIGR01037 139 --GQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP 216 (300)
T ss_pred --ccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch
Confidence 235666 78899999999999999997554 4578899999999999874 12110 1122
Q ss_pred h----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 018919 244 A----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMA 319 (349)
Q Consensus 244 ~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~ 319 (349)
+ .++.+.++++.+ ++|||++|||++++|+.++|++|||+||+||++++. + .++..++++|+.+|.
T Consensus 217 ~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p-----~~~~~i~~~l~~~~~ 285 (300)
T TIGR01037 217 AIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G-----FAFKKIIEGLIAFLK 285 (300)
T ss_pred hhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c-----hHHHHHHHHHHHHHH
Confidence 2 346777787776 699999999999999999999999999999999862 2 478899999999999
Q ss_pred HcCCCChhhhccc
Q 018919 320 LSGCRSLKEITRD 332 (349)
Q Consensus 320 ~~G~~~i~~l~~~ 332 (349)
..|+++++|+.+.
T Consensus 286 ~~g~~~~~e~~g~ 298 (300)
T TIGR01037 286 AEGFTSIEELIGI 298 (300)
T ss_pred HcCCCCHHHHhCc
Confidence 9999999999764
No 29
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.92 E-value=5.4e-23 Score=195.16 Aligned_cols=238 Identities=22% Similarity=0.249 Sum_probs=178.7
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCC--------------------------C
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~--------------------------~ 112 (349)
|++|+++|+++++||++|+=... .+..+++.+.+.|..+++ .|.+. .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 68999999999999999972121 133677777788877765 33321 0
Q ss_pred CHH----HHHhhC---CCceEEEEeecCChhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc
Q 018919 113 SVE----EVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (349)
Q Consensus 113 ~~e----~i~~~~---~~~~~~Ql~~~~~~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (349)
.++ ++.+.. ..+.++|+.. .+.+...+.+++++++| +|+|+||+.||+.. + + +...
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~-------~------g-g~~~- 138 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPNVK-------H------G-GMAF- 138 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCCCC-------C------C-cccc-
Confidence 122 222211 2567899876 57888889999999998 99999999998631 0 0 0000
Q ss_pred CCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC--CCC-CC-------------CCc-
Q 018919 185 QGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH--GAR-QL-------------DYV- 242 (349)
Q Consensus 185 ~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~--gg~-~~-------------~~~- 242 (349)
..++++ ++.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|. |.+ .. ..+
T Consensus 139 --~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~ 216 (301)
T PRK07259 139 --GTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGP 216 (301)
T ss_pred --ccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCc
Confidence 135667 78899999999999999998654 4478899999999999763 211 00 011
Q ss_pred ---hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 018919 243 ---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMA 319 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~ 319 (349)
+..++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||++++ ++ .+++.++++++.+|.
T Consensus 217 ~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~P----~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 217 AIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----DP----YAFPKIIEGLEAYLD 285 (301)
T ss_pred CcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----Cc----HHHHHHHHHHHHHHH
Confidence 22567888888877 79999999999999999999999999999999986 34 477889999999999
Q ss_pred HcCCCChhhhccc
Q 018919 320 LSGCRSLKEITRD 332 (349)
Q Consensus 320 ~~G~~~i~~l~~~ 332 (349)
..|+++++|+.+.
T Consensus 286 ~~g~~~i~~~~g~ 298 (301)
T PRK07259 286 KYGIKSIEEIVGI 298 (301)
T ss_pred HcCCCCHHHHhCc
Confidence 9999999999764
No 30
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.92 E-value=8.4e-23 Score=196.45 Aligned_cols=239 Identities=19% Similarity=0.236 Sum_probs=171.8
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC---------------------------
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------- 111 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~--------------------------- 111 (349)
|++|+++|++|++||++|.-.... .....+.+.+.|..+++. |.+.
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 689999999999999988743321 223344477777666542 1110
Q ss_pred --------CCHHH----HHhh---CCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCC
Q 018919 112 --------SSVEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (349)
Q Consensus 112 --------~~~e~----i~~~---~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p 176 (349)
..+++ +.+. ...+.+.|+.. .+.+...+.++.++++|++++++|+.||... +
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~------------~ 142 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTD------------P 142 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC------------C
Confidence 11222 1111 12467889876 4666777889999999999999999986420 0
Q ss_pred CcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC----HHHHHHHHHcCCCEEEEecCCCC-CC---------C-
Q 018919 177 PFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGAR-QL---------D- 240 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~----~~~a~~a~~~G~d~I~v~~~gg~-~~---------~- 240 (349)
... +...+.. ++.++++++.+++||++|.... .+.++.+.++|+|+|+++|+... .. .
T Consensus 143 ---~~~---g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~ 216 (334)
T PRK07565 143 ---DIS---GAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGL 216 (334)
T ss_pred ---CCc---cccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCC
Confidence 000 0011223 6889999999999999998643 35678889999999999886321 11 1
Q ss_pred --Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 241 --YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 241 --~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
+|+ ..++.+.++++.+ ++|||++|||+|++|+.|+|.+||++||+||++++ .|+ .+++.+.+||
T Consensus 217 glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~----~g~----~~~~~i~~~L 286 (334)
T PRK07565 217 VLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR----HGP----DYIGTILRGL 286 (334)
T ss_pred CCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh----hCc----HHHHHHHHHH
Confidence 122 2356666666665 79999999999999999999999999999999987 355 4788999999
Q ss_pred HHHHHHcCCCChhhhcccc
Q 018919 315 ELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 315 ~~~m~~~G~~~i~~l~~~~ 333 (349)
+.+|...|+++++|+++..
T Consensus 287 ~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 287 EDWMERHGYESLQQFRGSM 305 (334)
T ss_pred HHHHHHcCCCCHHHHhccc
Confidence 9999999999999998754
No 31
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.92 E-value=6.7e-23 Score=198.47 Aligned_cols=250 Identities=19% Similarity=0.261 Sum_probs=179.6
Q ss_pred CCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCC--C----------------------
Q 018919 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--T---------------------- 111 (349)
Q Consensus 57 ~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~--~---------------------- 111 (349)
+..|++|+|+|+++.+||++|.-.. .......+.+.++|...++. +.+ +
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp~------t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~ 80 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGPP------GTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAK 80 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCccC------CCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccc
Confidence 4678999999999999999998322 12345555556667776652 110 0
Q ss_pred -C-------------CHH----HHHh---hCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHh
Q 018919 112 -S-------------SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 169 (349)
Q Consensus 112 -~-------------~~e----~i~~---~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~ 169 (349)
. .++ ++.+ ..| .+.+..+....+.+.+.+.+++++++|++++++|+.||+.. -+++
T Consensus 81 ~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~-~~r~- 158 (385)
T PLN02495 81 GRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM-PERK- 158 (385)
T ss_pred cccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CcCc-
Confidence 0 122 2222 223 36777876556788899999999999999999999999631 1110
Q ss_pred hhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecCCC--CC----
Q 018919 170 KNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHGA--RQ---- 238 (349)
Q Consensus 170 ~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~gg--~~---- 238 (349)
..... ..+++. .+.++++++.+++||++|+.++. +.|+.|.++|+|+|++.|+-. ..
T Consensus 159 ---------~g~~~---gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~ 226 (385)
T PLN02495 159 ---------MGAAV---GQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLD 226 (385)
T ss_pred ---------cchhh---ccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccc
Confidence 00000 135566 56689999988999999998654 457889999999999998622 10
Q ss_pred -------C-----CC---ch----hhHHHHHHHHHHhc----CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 239 -------L-----DY---VP----ATIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 239 -------~-----~~---~~----~~~~~l~~i~~~~~----~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
. .+ |+ -++..+.++++.++ .++||++.|||.+++|++++|.+||++||+||++++
T Consensus 227 t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~-- 304 (385)
T PLN02495 227 TLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM-- 304 (385)
T ss_pred cCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee--
Confidence 0 11 22 13455566666653 259999999999999999999999999999999886
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 296 AAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 296 ~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
.|. .+++.+.+||+.+|...|+++++|+++..+
T Consensus 305 --~Gp----~vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 305 --HGY----PLVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred --cCc----HHHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 466 377889999999999999999999987654
No 32
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.91 E-value=9.1e-23 Score=204.69 Aligned_cols=142 Identities=23% Similarity=0.369 Sum_probs=118.1
Q ss_pred Cch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC------CCCCchhhHHHHHHHHHHhcC-CC
Q 018919 190 GKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RI 260 (349)
Q Consensus 190 ~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~------~~~~~~~~~~~l~~i~~~~~~-~i 260 (349)
..+ |+.|+++|+.+ ++||+++.+.+.++++.+.++|||+|.++.+.|. ..+.|.|++.++.++++.+.. ++
T Consensus 266 s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v 345 (495)
T PTZ00314 266 SIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGV 345 (495)
T ss_pred chHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCC
Confidence 344 78999999997 7999999999999999999999999999754331 234677888888888877642 69
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhh------c----------------
Q 018919 261 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------E---------------- 298 (349)
Q Consensus 261 pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~------~---------------- 298 (349)
|||++|||+++.|++|||++||++||+|+.|.- +++. .
T Consensus 346 ~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~ 425 (495)
T PTZ00314 346 PCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKVA 425 (495)
T ss_pred eEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccccC
Confidence 999999999999999999999999999998842 2211 0
Q ss_pred -CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018919 299 -GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 331 (349)
Q Consensus 299 -G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 331 (349)
|. -.+.+++..+..+|+..|.++|+.+|.||+.
T Consensus 426 egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 426 QGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 10 1278899999999999999999999999987
No 33
>PLN02826 dihydroorotate dehydrogenase
Probab=99.91 E-value=4.3e-22 Score=194.63 Aligned_cols=267 Identities=23% Similarity=0.304 Sum_probs=175.4
Q ss_pred cchHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCC
Q 018919 31 EDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSW 109 (349)
Q Consensus 31 ~~~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~ 109 (349)
+-|..++-....+... +.|+. ...++.+++++++|+++++||++|+ |+ +. +........+.|..++ ++|.
T Consensus 46 dpE~aH~~~~~~l~~~-~~~~~-~~~~~~~L~~~~~Gl~f~NPvglAA-G~----dk--n~~~~~~l~~lGfG~vevgTV 116 (409)
T PLN02826 46 DPETAHSLAISAAARG-LVPRE-KRPDPSVLGVEVWGRTFSNPIGLAA-GF----DK--NAEAVEGLLGLGFGFVEIGSV 116 (409)
T ss_pred CHHHHHHHHHHHHHhh-ccccc-ccCCCCCcceEECCEECCCCCEECc-cc----CC--CHHHHHHHHhcCCCeEEeCCc
Confidence 4444544444444422 33421 1245678999999999999999998 33 22 3345555566676655 3444
Q ss_pred CCC----------------------------CHH----HHHhhC-------------------------CCceEEEEeec
Q 018919 110 STS----------------------------SVE----EVASTG-------------------------PGIRFFQLYVY 132 (349)
Q Consensus 110 ~~~----------------------------~~e----~i~~~~-------------------------~~~~~~Ql~~~ 132 (349)
++. .++ ++.+.. +.+.++++..+
T Consensus 117 T~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~n 196 (409)
T PLN02826 117 TPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKN 196 (409)
T ss_pred cCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHHHHHHHHHhhhcccccccccccccccccccccccCceEEEEeccC
Confidence 321 111 121111 01456676543
Q ss_pred CCh-hHHHHHHHHHHHc--CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh------
Q 018919 133 KDR-NVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI------ 202 (349)
Q Consensus 133 ~~~-~~~~~~~~~~~~~--G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~------ 202 (349)
++. +...+.++.++.. .+|+++||+.||.. | ..+. ..+++. .+.++.+++.
T Consensus 197 k~~~~~~~Dy~~~~~~~~~~aDylelNiScPNt-------------p---glr~---lq~~~~l~~ll~~V~~~~~~~~~ 257 (409)
T PLN02826 197 KTSEDAAADYVQGVRALSQYADYLVINVSSPNT-------------P---GLRK---LQGRKQLKDLLKKVLAARDEMQW 257 (409)
T ss_pred CCCcccHHHHHHHHHHHhhhCCEEEEECCCCCC-------------C---Cccc---ccChHHHHHHHHHHHHHHHHhhh
Confidence 321 1233444444443 39999999999853 1 0111 223333 3445555422
Q ss_pred ---cCCcEEEEEec--CHHH----HHHHHHcCCCEEEEecCC-CC----------CCC---Cch----hhHHHHHHHHHH
Q 018919 203 ---TKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHG-AR----------QLD---YVP----ATIMALEEVVKA 255 (349)
Q Consensus 203 ---~~~pv~vK~v~--~~~~----a~~a~~~G~d~I~v~~~g-g~----------~~~---~~~----~~~~~l~~i~~~ 255 (349)
.++||++|+.+ +.++ |+.+.++|+|+|+++|+- ++ +.. +|+ .+++.+.++++.
T Consensus 258 ~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~ 337 (409)
T PLN02826 258 GEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRL 337 (409)
T ss_pred ccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHH
Confidence 46899999963 4334 788999999999999841 11 111 222 267888999888
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 256 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 256 ~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
+++++|||++|||++++|++++|.+||++||+||++++ .|+ .++..+++||.++|...|+++++|+.+..
T Consensus 338 ~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 338 TRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGP----ALIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred hCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCH----HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 87789999999999999999999999999999999987 366 37788999999999999999999998743
No 34
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.91 E-value=2.8e-22 Score=189.79 Aligned_cols=236 Identities=21% Similarity=0.236 Sum_probs=172.5
Q ss_pred ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC--------------------------CH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------SV 114 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~--------------------------~~ 114 (349)
+|+++|+++.+||++|+ +..+ ....+.+.+...|..+++. +.+.. .+
T Consensus 1 ~~~~~G~~~~nP~~~aa-g~~~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILAS-GTFG-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECC-CCCC-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 57899999999999995 2211 1234555555544666653 22211 11
Q ss_pred HH----HHhh---CCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCC
Q 018919 115 EE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (349)
Q Consensus 115 e~----i~~~---~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (349)
++ +.+. ...+.++||.. .+.+...+.+++++++|+|+|+||+.||....+- ... .
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g--------------~~~---~ 136 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGGG--------------MAF---G 136 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCc--------------ccc---c
Confidence 22 2221 12568899976 5678888999999999999999999999641110 000 1
Q ss_pred CCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC-CCCC---------------CCCch---
Q 018919 188 DLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQ---------------LDYVP--- 243 (349)
Q Consensus 188 ~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~-gg~~---------------~~~~~--- 243 (349)
.++++ .+.++++|+.+++||++|...+. +.++.+.++|+|+|+++|+ .++. ...|+
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 216 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIK 216 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccc
Confidence 35666 78899999988999999986543 5578899999999999874 1211 01122
Q ss_pred -hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 018919 244 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 322 (349)
Q Consensus 244 -~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G 322 (349)
..++.+.++++.+ ++|||++|||++++|+.++|++|||+|++||++++ ++ .++..+.++++.+|...|
T Consensus 217 ~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p----~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 217 PIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP----EAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred hHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch----HHHHHHHHHHHHHHHHcC
Confidence 2467788888776 79999999999999999999999999999999985 34 467899999999999999
Q ss_pred CCChhhhccc
Q 018919 323 CRSLKEITRD 332 (349)
Q Consensus 323 ~~~i~~l~~~ 332 (349)
+++++|+++.
T Consensus 286 ~~~~~~~~g~ 295 (296)
T cd04740 286 IKSIEELVGL 295 (296)
T ss_pred CCCHHHHhCc
Confidence 9999999763
No 35
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.91 E-value=8.8e-23 Score=194.96 Aligned_cols=250 Identities=17% Similarity=0.183 Sum_probs=182.6
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHH------H--HHhhC--CCceEEEEeecC
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE------E--VASTG--PGIRFFQLYVYK 133 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e------~--i~~~~--~~~~~~Ql~~~~ 133 (349)
++.+.++..|+++|||++.+ +.++++.+.++|..++++++-+.... . ..... +.+..+|+++ .
T Consensus 2 ~i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g-~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG-S 74 (321)
T ss_pred ccCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeC-C
Confidence 35567788999999999876 77999999999998888887432211 0 11111 2456799987 6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v 212 (349)
+++.+.+.++.+++.|++.|+||++||+. +. . ..+.+..- +.+|++ .+.++.+++.+++||.+|..
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~--~v--~------~~g~Gs~l---l~~p~~~~eiv~av~~a~d~pv~vKiR 141 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK--KV--N------RKLAGSAL---LQYPDLVKSILTEVVNAVDVPVTLKIR 141 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH--HH--c------CCCcccHH---hcCHHHHHHHHHHHHHhcCCceEEEEE
Confidence 88888888988888999999999999963 00 0 00111111 356777 77899999999999999996
Q ss_pred c--------CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCC
Q 018919 213 L--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGAS 283 (349)
Q Consensus 213 ~--------~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~ 283 (349)
. ..+.++.+.++|+|.|++++....+...|++.++.+.++++.+ ++|||++|||++++|+.++++ .|||
T Consensus 142 ~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l~~~gad 219 (321)
T PRK10415 142 TGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVLDYTGAD 219 (321)
T ss_pred ccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHhccCCC
Confidence 2 1256788899999999995432224556777899999999887 799999999999999999998 7999
Q ss_pred EEEEchHHH-----HHHhh----cC----HHHHHHHHHHHHHHHHHHHHHcCCC-Chhhhccccee
Q 018919 284 GIFIGRPVV-----YSLAA----EG----EKGVRRVLEMLREEFELAMALSGCR-SLKEITRDHIV 335 (349)
Q Consensus 284 ~V~ig~~~l-----~~~~~----~G----~~gv~~~l~~l~~el~~~m~~~G~~-~i~~l~~~~l~ 335 (349)
+||+||+++ +.... .| +...++.++.+.++++.+..+.|.. .+.+++++..+
T Consensus 220 gVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~ 285 (321)
T PRK10415 220 ALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSW 285 (321)
T ss_pred EEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 999999554 43211 12 1234567778888888888877754 56677766444
No 36
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.90 E-value=5.2e-22 Score=186.12 Aligned_cols=175 Identities=25% Similarity=0.385 Sum_probs=140.8
Q ss_pred ChhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
..+...+.+..+++.+ ++++++|++||+. |. .+.+ ..+++. .+.++++++..++||++|+
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~g---~~~l--~~~~e~l~~l~~~vk~~~~~Pv~vKl 168 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNT-------------PG---GRAL--GQDPELLEKLLEAVKAATKVPVFVKL 168 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------CC---hhhh--ccCHHHHHHHHHHHHhcccCceEEEe
Confidence 4556778888888888 8999999999963 11 1111 126666 4558899999999999999
Q ss_pred ecCH----HHHHHHHHcCCCEEEEecCCC-CC-------------CC---Cc----hhhHHHHHHHHHHhcCCCcEEEec
Q 018919 212 VLTA----EDARIAVQAGAAGIIVSNHGA-RQ-------------LD---YV----PATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 212 v~~~----~~a~~a~~~G~d~I~v~~~gg-~~-------------~~---~~----~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.++. +.|+.+.++|+|+|+++|+-. +. .. +| +-++..+.++++.++.++|||+.|
T Consensus 169 ~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvG 248 (310)
T COG0167 169 APNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVG 248 (310)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEec
Confidence 8765 447889999999999998522 10 01 22 236788888888887789999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 267 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
||.|++|+++.+.+||++|||||++++ .|+ .+++.+.++|.++|...|+++++|+.+..+
T Consensus 249 GI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp----~i~~~I~~~l~~~l~~~g~~si~d~iG~~~ 308 (310)
T COG0167 249 GIETGEDALEFILAGASAVQVGTALIY----KGP----GIVKEIIKGLARWLEEKGFESIQDIIGSAL 308 (310)
T ss_pred CcCcHHHHHHHHHcCCchheeeeeeee----eCc----hHHHHHHHHHHHHHHHcCCCCHHHHhchhc
Confidence 999999999999999999999999987 466 478899999999999999999999987654
No 37
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.90 E-value=1.7e-22 Score=202.57 Aligned_cols=141 Identities=26% Similarity=0.337 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCC-----C-CCCCchhhHHHHHHHHHHh-------c
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT-------Q 257 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg-----~-~~~~~~~~~~~l~~i~~~~-------~ 257 (349)
.+.|+++|+.++ ++|++..+.++++++.++++|||+|.|++||| | +.+.|+|++.++.++++++ +
T Consensus 271 ~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g 350 (502)
T PRK07107 271 KRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG 350 (502)
T ss_pred HHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC
Confidence 577999999986 55666669999999999999999999999999 4 5678899999999998875 2
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh--------------------
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------------------- 297 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~-------------------- 297 (349)
.++|||+||||+++.|++|||++|||+||+|++|- +++++
T Consensus 351 ~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~ 430 (502)
T PRK07107 351 VYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFE 430 (502)
T ss_pred CcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccC
Confidence 24999999999999999999999999999999883 22211
Q ss_pred cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 298 EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 298 ~G~~-------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
.|.+ .+.+++..+...|+..|.++|..+|.||+...
T Consensus 431 egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~ 473 (502)
T PRK07107 431 EGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKA 473 (502)
T ss_pred CccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCC
Confidence 0110 27889999999999999999999999998553
No 38
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.90 E-value=6.3e-22 Score=198.74 Aligned_cols=138 Identities=22% Similarity=0.322 Sum_probs=113.1
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----CCCC--ch---hhHHHHHHHHHHhcCCCcE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY--VP---ATIMALEEVVKATQGRIPV 262 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~~~~--~~---~~~~~l~~i~~~~~~~ipv 262 (349)
|+.++++|+.+ +.+|+++++.+.++|+.|.++|||+|.+++|+|. +... |. .++..++++++.. ++||
T Consensus 277 ~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vpV 354 (505)
T PLN02274 277 LEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GVPV 354 (505)
T ss_pred HHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CCeE
Confidence 89999999998 5899999999999999999999999999887663 2211 22 2455566666654 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEchHHHH--------------------HHhh-----c-----------------CH
Q 018919 263 FLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-----E-----------------GE 300 (349)
Q Consensus 263 ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~--------------------~~~~-----~-----------------G~ 300 (349)
|++|||+++.|++|||++||++||+|+.|.- ++++ . |.
T Consensus 355 IadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~egv 434 (505)
T PLN02274 355 IADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQGV 434 (505)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccCCce
Confidence 9999999999999999999999999998842 2211 0 11
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 301 K-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 301 ~-------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
+ .+.+++..+...|+..|.++|+.+|.||+..
T Consensus 435 ~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 435 SGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 1 2788999999999999999999999999866
No 39
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.6e-22 Score=190.42 Aligned_cols=248 Identities=25% Similarity=0.300 Sum_probs=192.1
Q ss_pred EcCeecCcceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCCCC-C-----HHHHHh--hC--CCceEEEEeecC
Q 018919 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS-S-----VEEVAS--TG--PGIRFFQLYVYK 133 (349)
Q Consensus 65 l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~-~~~~~~~~~~-~-----~e~i~~--~~--~~~~~~Ql~~~~ 133 (349)
+....+..++++|||.+.+ |..++..+++.|. ..++++|.+. . -+.... .. ..+..+||++ +
T Consensus 4 ~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g-s 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGG-S 76 (323)
T ss_pred cccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecC-C
Confidence 4456678899999999875 7899999999999 8888887431 1 111111 11 2568999987 6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCC--CCCCch-HHHHHHHHHhcC-CcEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG--LDLGKM-DEDVKWLQTITK-LPILV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~--~~~~~~-~~~i~~i~~~~~-~pv~v 209 (349)
+++.+.+.++.+++.|++.|.||++||.+ ++.....++ +.+|+. .+.|+.+++.++ +||.|
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTV 141 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTV 141 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEE
Confidence 88999999999999999999999999963 111111111 567888 788999999995 99999
Q ss_pred EEecC--------HHHHHHHHHcCCCEEEEecCCCC--CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 018919 210 KGVLT--------AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 210 K~v~~--------~~~a~~a~~~G~d~I~v~~~gg~--~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~ 279 (349)
|.... .+.++.+.++|++.++| ||.+ +.+.++..++.+.++++.++. +|||++|+|.+++|+.+.|+
T Consensus 142 KiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~~-ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 142 KIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVPS-IPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred EEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCCC-CeEEeCCCcCCHHHHHHHHH
Confidence 99732 35688899999999999 6654 556778899999999999843 99999999999999999999
Q ss_pred -hCCCEEEEch-----HHHHHH---hhcCH---HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceecc
Q 018919 280 -LGASGIFIGR-----PVVYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 337 (349)
Q Consensus 280 -~GA~~V~ig~-----~~l~~~---~~~G~---~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~ 337 (349)
.|+|+||+|| |+++.. ...|. ....+.++.+..+++.+....|...+..++++..+..
T Consensus 219 ~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~~ 288 (323)
T COG0042 219 YTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYL 288 (323)
T ss_pred hhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 6899999999 445542 12233 4567888999999999999998777888887755443
No 40
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.90 E-value=3.4e-22 Score=199.12 Aligned_cols=145 Identities=26% Similarity=0.315 Sum_probs=119.6
Q ss_pred CCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC------CCCchhhHHHHHHHHHHhcC-C
Q 018919 189 LGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-R 259 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ 259 (349)
++.. .+.++++|+.+ ++||++..+.+.+.++.+.++|||+|.|+..+|+. ...|.++...+.+++++... +
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~ 328 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLG 328 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcC
Confidence 3444 67799999987 79999988999999999999999999998877753 23578888888888765532 6
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH---------------------HHHhh---------------------
Q 018919 260 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV---------------------YSLAA--------------------- 297 (349)
Q Consensus 260 ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l---------------------~~~~~--------------------- 297 (349)
+|||++|||+++.|++|||++||++||+|+.|- +++++
T Consensus 329 ~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~ 408 (475)
T TIGR01303 329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKAL 408 (475)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhcccc
Confidence 999999999999999999999999999999872 12211
Q ss_pred --cCHHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 298 --EGEKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 298 --~G~~g-----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
+|.+| +.+++..+...|+..|.++|+.+|.||+...
T Consensus 409 v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~ 457 (475)
T TIGR01303 409 FEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERA 457 (475)
T ss_pred ccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCC
Confidence 22222 6788999999999999999999999998664
No 41
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.90 E-value=3.8e-22 Score=198.76 Aligned_cols=138 Identities=30% Similarity=0.425 Sum_probs=116.1
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC-----C-CCCchhhHHHHHHHHHHhc-CCCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQ-GRIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~-----~-~~~~~~~~~~l~~i~~~~~-~~ipvia 264 (349)
++.|+++|+.+ ++||+++.+.+.++++.+.++|||+|.++.++|. . ...|.|++..+.++++.+. .++|||+
T Consensus 253 ~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvia 332 (450)
T TIGR01302 253 IDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIA 332 (450)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEE
Confidence 78899999995 8999999999999999999999999999865542 1 2357888999998887653 3799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh------------------------cCH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EGE 300 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~------------------------~G~ 300 (349)
+|||+++.|++|||++||++||+|+.|. +++++ .|.
T Consensus 333 dGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~~egv 412 (450)
T TIGR01302 333 DGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFVPEGV 412 (450)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccccCCce
Confidence 9999999999999999999999999883 22211 111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 018919 301 -------KGVRRVLEMLREEFELAMALSGCRSLKEIT 330 (349)
Q Consensus 301 -------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~ 330 (349)
-.+.+++..+...|+..|.++|+.++.||+
T Consensus 413 ~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 413 EGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred EEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 137888999999999999999999999986
No 42
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.90 E-value=1.4e-21 Score=187.00 Aligned_cols=245 Identities=20% Similarity=0.232 Sum_probs=175.9
Q ss_pred cCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC-C-------HHHHHhhCC--CceEEEEeecCCh
Q 018919 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-------VEEVASTGP--GIRFFQLYVYKDR 135 (349)
Q Consensus 66 ~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~-~-------~e~i~~~~~--~~~~~Ql~~~~~~ 135 (349)
.++++..|+++|||.+.+ +.++++.++++|..++++++-+. . ........+ .+..+||.+ .++
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g-~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFG-SDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeC-CCH
Confidence 467888999999998865 77999999999988888877321 1 111222222 578899987 688
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec-
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL- 213 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~- 213 (349)
+.+.+.+++++++|+++|+||+.||.. .+.+ .+. +... ..++++ .+.++.+++.+++||.+|...
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~---~~~------Gs~l---~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KITK---KGA------GSAL---LRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-HhcC---CCc------cchH---hCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 889999999999999999999999842 1111 000 0000 235667 788999999999999999852
Q ss_pred -------CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEE
Q 018919 214 -------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGI 285 (349)
Q Consensus 214 -------~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V 285 (349)
..+.++.+.++|+|.|++++....+...+++.++.+.++++.+ ++||+++|||++++|+.++++ .|||+|
T Consensus 142 ~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~da~~~l~~~gad~V 219 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNGDIFSPEDAKAMLETTGCDGV 219 (319)
T ss_pred cCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHhhCCCEE
Confidence 2356788999999999995432222334567789999998887 699999999999999999995 799999
Q ss_pred EEchHHHH-----HHh----hcCH----HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhccc
Q 018919 286 FIGRPVVY-----SLA----AEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITRD 332 (349)
Q Consensus 286 ~ig~~~l~-----~~~----~~G~----~gv~~~l~~l~~el~~~m~~~G~~-~i~~l~~~ 332 (349)
|+||+++. .-. ..|. ....+.++.+.++++......|.. .+..++++
T Consensus 220 migR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 280 (319)
T TIGR00737 220 MIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKH 280 (319)
T ss_pred EEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99997763 111 1121 133456677777777777766643 35555544
No 43
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.89 E-value=2.2e-21 Score=184.57 Aligned_cols=240 Identities=18% Similarity=0.182 Sum_probs=170.2
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCC--------------------------C
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~--------------------------~ 112 (349)
|++|+++|++|.+||++|.=.. + .+....+.+.+.|..+++ .|.+. .
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~-~-----~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVY-C-----MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCC-C-----CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 6799999999999999998321 1 133445557788877665 23221 0
Q ss_pred CH----HHHHhh---CC-CceEEEEeecCChhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc
Q 018919 113 SV----EEVAST---GP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (349)
Q Consensus 113 ~~----e~i~~~---~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (349)
.+ +++.+. .+ .+.+.++.. .+.+.+.+.++.++++| +++|++|+.||.... . ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~G-~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-~---------------~~ 137 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVVG-LSPEETHTILKKIQASDFNGLVELNLSCPNVPG-K---------------PQ 137 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEe-CcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-c---------------cc
Confidence 12 222221 12 456777765 56777788899998888 999999999995310 0 00
Q ss_pred cCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH---HHHHHHH---HcCCCEEEEecCC--C--------CC-C-----C
Q 018919 184 FQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA---EDARIAV---QAGAAGIIVSNHG--A--------RQ-L-----D 240 (349)
Q Consensus 184 ~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~---~~a~~a~---~~G~d~I~v~~~g--g--------~~-~-----~ 240 (349)
. ..|++. .+.++++++.+++||++|..++. +.++.+. +.|+++|...|.- + +. . .
T Consensus 138 ~--g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~ 215 (310)
T PRK02506 138 I--AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGF 215 (310)
T ss_pred c--ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCC
Confidence 0 124555 67799999999999999997543 3343433 5567777666631 1 10 0 1
Q ss_pred ---Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 241 ---YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 241 ---~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
+| +-.+..+.++++.++.++|||+.|||++++|++|+|.+||++||+|+++++ .|+ .++..+.+|
T Consensus 216 GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~ 287 (310)
T PRK02506 216 GGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK----EGP----AVFERLTKE 287 (310)
T ss_pred CcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH----hCh----HHHHHHHHH
Confidence 12 235677788888776679999999999999999999999999999999987 355 478899999
Q ss_pred HHHHHHHcCCCChhhhccc
Q 018919 314 FELAMALSGCRSLKEITRD 332 (349)
Q Consensus 314 l~~~m~~~G~~~i~~l~~~ 332 (349)
|+.+|...|+++++|+++.
T Consensus 288 L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 288 LKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred HHHHHHHhCCCCHHHHhCh
Confidence 9999999999999999873
No 44
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.89 E-value=1.9e-21 Score=184.68 Aligned_cols=220 Identities=18% Similarity=0.191 Sum_probs=160.2
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcC-CeEEecCCCCC--------CHHHHHh------hCC--CceEEEEeecCC
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TGP--GIRFFQLYVYKD 134 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G-~~~~~~~~~~~--------~~e~i~~------~~~--~~~~~Ql~~~~~ 134 (349)
+|+++|||++.+ +.++++.+.+.| ...++++|-+. ....+.. ..+ .+..+||++ .+
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g-~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLG-QY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEecc-CC
Confidence 489999999876 779999999999 68888887331 1111111 122 578999997 68
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccC-C-CCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ-G-LDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~-~-~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
++.+.+.++++++.|++.|+||++||.+ +. .....+ + +.++++ .+.++.+++.+ ++||.+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~--~v-------------~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsv 138 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK--TV-------------NGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTV 138 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch--HH-------------hcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEE
Confidence 9999999999999999999999999863 10 001100 0 346777 78899999988 499999
Q ss_pred EEecC-------HHHHHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-h
Q 018919 210 KGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-L 280 (349)
Q Consensus 210 K~v~~-------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~ 280 (349)
|.... .+.++.+.++|+|.|+|++....+.+.+++ .++.+.++++.+ ++|||++|||.|++|+.++++ .
T Consensus 139 KiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi~nGdI~t~~da~~~l~~~ 216 (312)
T PRK10550 139 KVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVIANGEIWDWQSAQQCMAIT 216 (312)
T ss_pred EEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEEEeCCcCCHHHHHHHHhcc
Confidence 98632 255788999999999995432224455654 789999999887 799999999999999999997 7
Q ss_pred CCCEEEEchHH-----HHHHhhcCH--HHHHHHHHHHHHHHH
Q 018919 281 GASGIFIGRPV-----VYSLAAEGE--KGVRRVLEMLREEFE 315 (349)
Q Consensus 281 GA~~V~ig~~~-----l~~~~~~G~--~gv~~~l~~l~~el~ 315 (349)
|||+|||||++ ++.....|. ....+.++.+.+.++
T Consensus 217 g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~ 258 (312)
T PRK10550 217 GCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTR 258 (312)
T ss_pred CCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHH
Confidence 99999999954 454332232 123345555555554
No 45
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.89 E-value=1.5e-21 Score=196.30 Aligned_cols=140 Identities=27% Similarity=0.415 Sum_probs=117.6
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEec-----CCCCCC-CCchhhHHHHHHHHHHhc-CCCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQL-DYVPATIMALEEVVKATQ-GRIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~-----~gg~~~-~~~~~~~~~l~~i~~~~~-~~ipvia 264 (349)
++.++++++++ ++||+++.+.+.++++.+.++|+|+|.++. +++++. .+|.|+++++.++++.++ .++|||+
T Consensus 257 l~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~via 336 (486)
T PRK05567 257 LDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIA 336 (486)
T ss_pred HHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEE
Confidence 67899999998 899999999999999999999999999853 333443 457889999999988764 3699999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHH--------------------HHHhh------------------------cCH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EGE 300 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l--------------------~~~~~------------------------~G~ 300 (349)
+|||+++.|++|||++|||+||+|++|- +++++ .|.
T Consensus 337 dGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g~ 416 (486)
T PRK05567 337 DGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEGI 416 (486)
T ss_pred cCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCce
Confidence 9999999999999999999999999883 22211 010
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 301 -------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 301 -------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
-.+.+++..+...|+..|.++|..+|+||+..
T Consensus 417 ~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 417 EGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 12788999999999999999999999999844
No 46
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.89 E-value=2.9e-21 Score=191.31 Aligned_cols=248 Identities=21% Similarity=0.258 Sum_probs=177.2
Q ss_pred CCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCC----C-C--------------------
Q 018919 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS----T-S-------------------- 112 (349)
Q Consensus 59 ~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~----~-~-------------------- 112 (349)
.|++|+++|++|++||++|.= .+... ...+.+.. +.|+.+++. |.+ + .
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag---~~~~~--~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASA---PPTNK--YYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCc---CCCCC--HHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 478999999999999999972 12122 22334433 356554431 110 0 0
Q ss_pred ------CHHH----H---HhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc
Q 018919 113 ------SVEE----V---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (349)
Q Consensus 113 ------~~e~----i---~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~ 178 (349)
.++. + .+..+ .+.++|++...+++.+.+.++.+++.|+++|+||+.||+. ...+ +
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~-~~~~----------~ 144 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHG-MSER----------G 144 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-cccc----------C
Confidence 1121 1 11223 4568999875477888899999999999999999999962 0000 0
Q ss_pred CcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC-CC----------------
Q 018919 179 LTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GA---------------- 236 (349)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~-gg---------------- 236 (349)
.+... ..+++. .+.++++++.+++||++|+..+. +.++.+.++|+|+|++.|+ .+
T Consensus 145 ~g~~~---~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~ 221 (420)
T PRK08318 145 MGSAV---GQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVN 221 (420)
T ss_pred Ccccc---cCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceec
Confidence 00000 235666 67899999988999999998543 6678899999999998764 11
Q ss_pred -C---CCCCchh----hHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHH
Q 018919 237 -R---QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 307 (349)
Q Consensus 237 -~---~~~~~~~----~~~~l~~i~~~~~-~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l 307 (349)
+ +..+|++ +++.+.++++.++ .++|||++|||.+++|++++|.+|||+|||||++++ .|. .++
T Consensus 222 ~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp----~ii 293 (420)
T PRK08318 222 GKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGF----RIV 293 (420)
T ss_pred CCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCc----hhH
Confidence 1 1123444 5788888888764 279999999999999999999999999999999886 355 367
Q ss_pred HHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 308 EMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 308 ~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
..+.+||+.+|...|+.+++++.+..+
T Consensus 294 ~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 294 EDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred HHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 889999999999999999999986544
No 47
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.89 E-value=2.4e-21 Score=183.68 Aligned_cols=214 Identities=22% Similarity=0.270 Sum_probs=152.8
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC--------------------------
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~-------------------------- 112 (349)
|++|+++|+++++||++|+ +..+ .+....+.+.+.|+.+++. +.+..
T Consensus 1 ~l~~~~~Gl~l~nPi~~aa-g~~~-----~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLAS-APPT-----TSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCC-cCCC-----CCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 6799999999999999999 3211 1233444444557655542 21110
Q ss_pred -------CHHH----HH---hhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC
Q 018919 113 -------SVEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (349)
Q Consensus 113 -------~~e~----i~---~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~ 177 (349)
.++. +. +..+ .+.+.|++...+++.+.+.++++++.|+++|++|++||..-.+ .
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~-----------~ 143 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE-----------R 143 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC-----------C
Confidence 0111 11 1122 4678999875488888899999988999999999999964100 0
Q ss_pred cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecCC-C---------------
Q 018919 178 FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-A--------------- 236 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~g-g--------------- 236 (349)
+.+... ..+++. .+.++++++.+++||++|+..+. +.++.+.++|+|+|+++|+. +
T Consensus 144 ~~G~~l---~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~ 220 (299)
T cd02940 144 GMGAAV---GQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGV 220 (299)
T ss_pred CCchhh---ccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccc
Confidence 000000 235666 67799999989999999987543 67888999999999988752 1
Q ss_pred --C---CCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 --R---QLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 --~---~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+ +..+|+ .+++.+.++++.+++++|||++|||++++|+.++|.+|||+||+||++++
T Consensus 221 ~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 221 EGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred cCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 0 112333 34889999999886579999999999999999999999999999999886
No 48
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.89 E-value=2e-21 Score=184.90 Aligned_cols=236 Identities=18% Similarity=0.239 Sum_probs=165.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCCCC------CHHHHHhhCC--CceEEEEeecCChhHHHHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~-~~~~~~~~~~------~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~ 143 (349)
|+++|||.+.+ +.+++..++++|. ..++++|.+. ...+.....+ .+..+||++ .|++...+.++
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g-~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGG-SDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEcc-CCHHHHHHHHH
Confidence 79999999876 7799999999998 6788887431 1122222223 678999987 68999999999
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC--------
Q 018919 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT-------- 214 (349)
Q Consensus 144 ~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~-------- 214 (349)
.+++.|+++|+||++||..-.+ +.++ +..- +.+|++ .+.++.+++.+++||.+|....
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~v~----~~g~------Gs~L---l~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~ 141 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDRVQ----NGNF------GACL---MGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYE 141 (318)
T ss_pred HHHhCCCCEEEEECCCCHHHhC----CCCe------ehHh---hcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHH
Confidence 9999999999999999963100 0000 1000 346777 7789999999999999999742
Q ss_pred --HHHHHHHHHcCCCEEEEecCCCCC---CCC-------chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 215 --AEDARIAVQAGAAGIIVSNHGARQ---LDY-------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 215 --~~~a~~a~~~G~d~I~v~~~gg~~---~~~-------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
.+.++.+.++|+|.|+| ||++. ... .+..++.+.++++.+. ++|||++|||++.+|+.+++. ||
T Consensus 142 ~~~~~~~~l~~~G~~~itv--HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~NGdI~s~~da~~~l~-g~ 217 (318)
T TIGR00742 142 FLCDFVEIVSGKGCQNFIV--HARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEINGGIKNSEQIKQHLS-HV 217 (318)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEEECCcCCHHHHHHHHh-CC
Confidence 13378889999999999 55541 111 2336788888887763 699999999999999999996 99
Q ss_pred CEEEEchHH-----HHHHhh----cC---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 283 SGIFIGRPV-----VYSLAA----EG---EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 283 ~~V~ig~~~-----l~~~~~----~G---~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
|+|||||++ ++.... +| .....+.++.+.++++..... ...+.+++++..
T Consensus 218 dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~rk~~~ 279 (318)
T TIGR00742 218 DGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHITRHLL 279 (318)
T ss_pred CEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHH
Confidence 999999954 443221 11 112345556666666654332 234556655543
No 49
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.88 E-value=5.7e-21 Score=183.27 Aligned_cols=248 Identities=26% Similarity=0.322 Sum_probs=154.0
Q ss_pred eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHH
Q 018919 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 68 ~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~ 147 (349)
.+++.||++++|+++++ .++...++++++...|+....++.. .+.++.... ....++|+ .........+.+
T Consensus 62 ~~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~-~~~~I~Q~-~sg~fGv~~~~l----- 132 (368)
T PF01645_consen 62 LELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEGG-ELPEERKAA-KDLRIKQI-ASGRFGVRPEYL----- 132 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHH-----
T ss_pred hhheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc-CCceEEEc-CCCCCCCCHHHh-----
Confidence 45789999999999976 4567889999999999998888764 344433222 22237896 333344443333
Q ss_pred cCCCEEEEecCC---CCCC-----chh-HHhhhhcCCCCcCcc---cccCCCCCCch-HHHHHHHHHhc-CCcEEEEEec
Q 018919 148 AGFKAIALTVDT---PRLG-----RRE-ADIKNRFTLPPFLTL---KNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVL 213 (349)
Q Consensus 148 ~G~~~i~i~~d~---p~~g-----~r~-~d~~~~~~~p~~~~~---~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~ 213 (349)
..+++|+|.+.. |..| .+. .+++.-..++++.+. +...++.+++. .+.|+++|+.+ +.||.+|.+.
T Consensus 133 ~~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~ 212 (368)
T PF01645_consen 133 KQADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVA 212 (368)
T ss_dssp CC-SEEEEE---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-
T ss_pred cCCCeEEEEEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECC
Confidence 357899988864 2211 111 112222223433332 22222344444 56699999998 8999999984
Q ss_pred C--HHHHHH-HHHcCCCEEEEecC-CCCC-------CCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHH
Q 018919 214 T--AEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 214 ~--~~~a~~-a~~~G~d~I~v~~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~ka 277 (349)
. .++... +.++|+|+|+++++ ||+. .+.|.|....|.++.+.+ ++++.++++||++++.|++|+
T Consensus 213 ~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~ka 292 (368)
T PF01645_consen 213 GRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKA 292 (368)
T ss_dssp STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHH
T ss_pred CCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHH
Confidence 3 344444 89999999999986 4442 235778888888888875 357999999999999999999
Q ss_pred HHhCCCEEEEchHHHHHHhhc-----------------------------CHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 278 LALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 278 l~~GA~~V~ig~~~l~~~~~~-----------------------------G~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
+++|||+|.+||++|+++.|. +.+.|.++++.+.+|++..|+.+|.+
T Consensus 293 laLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 293 LALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGKR 368 (368)
T ss_dssp HHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999988652 34679999999999999999999964
No 50
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.87 E-value=5.4e-20 Score=177.48 Aligned_cols=232 Identities=18% Similarity=0.228 Sum_probs=162.4
Q ss_pred CCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCCC----------------------
Q 018919 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS---------------------- 112 (349)
Q Consensus 56 ~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~~---------------------- 112 (349)
.++++++|+++|+++.+||++|. +.. .+....+.+.+.|..+++ .|.+..
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD------KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC------CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45788999999999999999877 321 233556668888888765 232210
Q ss_pred ------CH----HHHHhhC-CCceEEEEeecC------ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCC
Q 018919 113 ------SV----EEVASTG-PGIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL 175 (349)
Q Consensus 113 ------~~----e~i~~~~-~~~~~~Ql~~~~------~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~ 175 (349)
.+ +++.+.. ..+.++++.... ..+...+.++++.+ +++++++|+.||....
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g----------- 184 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPG----------- 184 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCC-----------
Confidence 01 2222221 134677875431 22334444444433 5999999999996410
Q ss_pred CCcCcccccCCCCCCch-HHHHHHHHHhcC-----CcEEEEEecC------HHHHHHHHHcCCCEEEEecCCC-------
Q 018919 176 PPFLTLKNFQGLDLGKM-DEDVKWLQTITK-----LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA------- 236 (349)
Q Consensus 176 p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~-----~pv~vK~v~~------~~~a~~a~~~G~d~I~v~~~gg------- 236 (349)
.+. ..+++. .+.++++|+.++ +||++|+..+ .+.++.+.++|+|+|+++|+-.
T Consensus 185 -----~~~---~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~ 256 (344)
T PRK05286 185 -----LRD---LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKG 256 (344)
T ss_pred -----ccc---ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccc
Confidence 000 124555 677999999887 9999999743 2457888999999999988421
Q ss_pred ------CCCCCchh----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHH
Q 018919 237 ------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 306 (349)
Q Consensus 237 ------~~~~~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~ 306 (349)
++..+|++ .++.+.++++.+++++|||++|||++++|+.+++.+|||+||+||++++ +|+ .+
T Consensus 257 ~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~----~gP----~~ 328 (344)
T PRK05286 257 LPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY----EGP----GL 328 (344)
T ss_pred cccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH----hCc----hH
Confidence 01112333 5678888888876679999999999999999999999999999999986 255 36
Q ss_pred HHHHHHHHHHHHHHcC
Q 018919 307 LEMLREEFELAMALSG 322 (349)
Q Consensus 307 l~~l~~el~~~m~~~G 322 (349)
++.+++||+.+|...|
T Consensus 329 ~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 329 VKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7789999999998765
No 51
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.86 E-value=1.3e-19 Score=171.37 Aligned_cols=222 Identities=18% Similarity=0.100 Sum_probs=154.3
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC--------------------------CC--
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SS-- 113 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~--------------------------~~-- 113 (349)
++++|++|++||++|+=.. +.+....+.+.+.|..+++. |... ..
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~------~~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPW------CTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCC------CCCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 5788999999999998321 23445566666688877652 2211 01
Q ss_pred --HHHHHhh------CCCceEEEEeecCChhHHHHHHHHHHHc---CCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc
Q 018919 114 --VEEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (349)
Q Consensus 114 --~e~i~~~------~~~~~~~Ql~~~~~~~~~~~~~~~~~~~---G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~ 182 (349)
++++.+. ...+.++|+... ++...+.++++++. |+++|++|+.||+.... .
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------------~ 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------------P 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc----------------c
Confidence 2223221 125678998764 67777888888775 79999999999963100 0
Q ss_pred ccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH------HHHHHHHHc--CCCEEEEecCCC---------CC------
Q 018919 183 NFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA------EDARIAVQA--GAAGIIVSNHGA---------RQ------ 238 (349)
Q Consensus 183 ~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~------~~a~~a~~~--G~d~I~v~~~gg---------~~------ 238 (349)
.. ..+++. .+.++++++.+++||++|+.... +.++.+.++ |+|+|++.|+-+ +.
T Consensus 137 ~~--~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~ 214 (294)
T cd04741 137 PP--AYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPK 214 (294)
T ss_pred cc--cCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCC
Confidence 00 125566 67899999999999999997432 334556677 999999876421 11
Q ss_pred -CCCchh-------hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHH
Q 018919 239 -LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 310 (349)
Q Consensus 239 -~~~~~~-------~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l 310 (349)
..+|.+ .+..+.++++.++.++|||++|||.+++|+++++.+|||+||+||++++ .|+ .+++.+
T Consensus 215 ~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i 286 (294)
T cd04741 215 TGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK----EGP----KVFARI 286 (294)
T ss_pred CCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh----cCc----hHHHHH
Confidence 112222 4566677777775569999999999999999999999999999999986 255 366778
Q ss_pred HHHHHHHH
Q 018919 311 REEFELAM 318 (349)
Q Consensus 311 ~~el~~~m 318 (349)
.+||+.+|
T Consensus 287 ~~~L~~~~ 294 (294)
T cd04741 287 EKELEDIW 294 (294)
T ss_pred HHHHHhhC
Confidence 88888764
No 52
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.85 E-value=1.4e-19 Score=180.66 Aligned_cols=141 Identities=29% Similarity=0.362 Sum_probs=116.6
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----C--CCCchhhHHHHHHHHHHhcC-CCcEEE
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQG-RIPVFL 264 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~--~~~~~~~~~~l~~i~~~~~~-~ipvia 264 (349)
++.+++||+++ +++|++..+.|.+.++.+.++|||+|.|.-..|. + ...+.|++.++.+++++... ++|||+
T Consensus 256 ~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via 335 (479)
T PRK07807 256 LEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWA 335 (479)
T ss_pred HHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEe
Confidence 78899999998 7999999999999999999999999998654442 1 12467899999999886543 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHHH---------------------HHhh-----------------------cCH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVVY---------------------SLAA-----------------------EGE 300 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l~---------------------~~~~-----------------------~G~ 300 (349)
+|||+++.|+.|+|++||++||+|+.|.- ++++ .|.
T Consensus 336 ~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eGv 415 (479)
T PRK07807 336 DGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEEGI 415 (479)
T ss_pred cCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCCCc
Confidence 99999999999999999999999998831 1110 121
Q ss_pred HH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 018919 301 KG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 333 (349)
Q Consensus 301 ~g-----------v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 333 (349)
++ +..++..+...|+..|.++|..+|+||+...
T Consensus 416 ~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~ 459 (479)
T PRK07807 416 STSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERA 459 (479)
T ss_pred cceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCC
Confidence 11 6778999999999999999999999998663
No 53
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.85 E-value=1.8e-19 Score=172.97 Aligned_cols=242 Identities=20% Similarity=0.215 Sum_probs=168.6
Q ss_pred ecCcceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCCCC------CHHHHHhhCC--CceEEEEeecCChhHHH
Q 018919 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVA 139 (349)
Q Consensus 69 ~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~-~~~~~~~~~~------~~e~i~~~~~--~~~~~Ql~~~~~~~~~~ 139 (349)
....|+++|||.+.+ +.+++..+++.|. ..++++|-+. .........+ .+..+||++ .|++...
T Consensus 8 ~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g-~~p~~~~ 80 (333)
T PRK11815 8 LPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGG-SDPADLA 80 (333)
T ss_pred CCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeC-CCHHHHH
Confidence 345799999999876 7799999999997 6778877321 1122222223 678999987 6899999
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC----
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT---- 214 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~---- 214 (349)
+.+++++++|+++|+||++||..-.|. .++ +... ..++++ .+.++.+++.+++||.+|....
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~~v~~----~~~------Gs~L---~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~ 147 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQN----GRF------GACL---MAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ 147 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHccC----CCe------eeHH---hcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC
Confidence 999999999999999999998642111 011 0000 346777 7889999999999999998521
Q ss_pred ------HHHHHHHHHcCCCEEEEecCCC-CCCCC-------chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 215 ------AEDARIAVQAGAAGIIVSNHGA-RQLDY-------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 215 ------~~~a~~a~~~G~d~I~v~~~gg-~~~~~-------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
.+.++.+.++|+|+|++++..+ .+... .+..++.+.++++.+. ++|||++|||++++|+.++++
T Consensus 148 ~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~iPVI~nGgI~s~eda~~~l~- 225 (333)
T PRK11815 148 DSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-HLTIEINGGIKTLEEAKEHLQ- 225 (333)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-CCeEEEECCcCCHHHHHHHHh-
Confidence 2446788899999999953211 11111 2345788888877642 699999999999999999987
Q ss_pred CCCEEEEchHHHH-----HHhh---cCH----HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 018919 281 GASGIFIGRPVVY-----SLAA---EGE----KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 334 (349)
Q Consensus 281 GA~~V~ig~~~l~-----~~~~---~G~----~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 334 (349)
|||+|||||+++. .... .|. ....+.++.+.++++..... |. .+..++++..
T Consensus 226 ~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~rk~~~ 289 (333)
T PRK11815 226 HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLNHITRHML 289 (333)
T ss_pred cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHHHHHHHHH
Confidence 7999999997653 2211 122 12445666677777666553 43 4666665543
No 54
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.84 E-value=3.4e-19 Score=170.92 Aligned_cols=248 Identities=21% Similarity=0.254 Sum_probs=163.1
Q ss_pred chHHHHHHHhhccccccccccc-CCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCC
Q 018919 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW 109 (349)
Q Consensus 32 ~~~t~~~n~~~~~~~~l~p~~l-~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~ 109 (349)
-|.+++-....+.-+...|-.. ....+.|++|+++|+++.+||++|. +. .. +....+.+.+.|..+++ .|.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~----~~--~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GF----DK--NAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CC----CC--CHHHHHHHHHCCCcEEEEecc
Confidence 3455555555565555555322 4567889999999999999999876 32 12 33445555578877664 222
Q ss_pred CCC----------------------------C----HHHHHhhC--CCceEEEEeecCC---hhHHHHHHHHHHHc--CC
Q 018919 110 STS----------------------------S----VEEVASTG--PGIRFFQLYVYKD---RNVVAQLVRRAERA--GF 150 (349)
Q Consensus 110 ~~~----------------------------~----~e~i~~~~--~~~~~~Ql~~~~~---~~~~~~~~~~~~~~--G~ 150 (349)
+.. . ++++.+.. ..+.++|+..... .+...+.++.++++ ++
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~a 161 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYA 161 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhC
Confidence 110 1 12233222 2567889866421 12233444444443 49
Q ss_pred CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC-----CcEEEEEecC------HHHH
Q 018919 151 KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK-----LPILVKGVLT------AEDA 218 (349)
Q Consensus 151 ~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~-----~pv~vK~v~~------~~~a 218 (349)
+++++|+.||.... .+. ..+++. .+.++++|+.++ +||++|.... .+.+
T Consensus 162 d~ielN~scP~~~g----------------~~~---~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia 222 (327)
T cd04738 162 DYLVVNVSSPNTPG----------------LRD---LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIA 222 (327)
T ss_pred CEEEEECCCCCCCc----------------ccc---ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHH
Confidence 99999999996310 000 235555 567999998886 9999999742 2457
Q ss_pred HHHHHcCCCEEEEecCCC-------------CCCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 219 RIAVQAGAAGIIVSNHGA-------------RQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 219 ~~a~~~G~d~I~v~~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
+.+.++|+|+|+++|+-. .+..+|+ .+++.+.++++.++.++||+++|||++++|+.+++.+|
T Consensus 223 ~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aG 302 (327)
T cd04738 223 DVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG 302 (327)
T ss_pred HHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcC
Confidence 888999999999987411 0011232 34788888888876679999999999999999999999
Q ss_pred CCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 282 ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 282 A~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
||+||+||++++ +|+. ++..+.+|
T Consensus 303 Ad~V~vg~~~~~----~gP~----~~~~i~~~ 326 (327)
T cd04738 303 ASLVQLYTGLVY----EGPG----LVKRIKRE 326 (327)
T ss_pred CCHHhccHHHHh----hCcH----HHHHHHhc
Confidence 999999999986 3553 44455544
No 55
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.84 E-value=1.2e-20 Score=179.52 Aligned_cols=240 Identities=25% Similarity=0.324 Sum_probs=154.8
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCe-EEecCCCCC-----C---HHHHHhhCC--CceEEEEeecCChhHHHHHHH
Q 018919 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----S---VEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (349)
Q Consensus 75 ~iApm~~~~l~~~~~~~~la~aa~~~G~~-~~~~~~~~~-----~---~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~ 143 (349)
++|||.+.+ +.+++..+.+.|.. .+++++.+. . ........+ .+..+||++ +|++...+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g-~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFG-NDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEee-ccHHHHHHHHH
Confidence 589998865 78999999999999 888887431 1 111111223 578999987 78999999998
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec--------C
Q 018919 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL--------T 214 (349)
Q Consensus 144 ~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~--------~ 214 (349)
.+.+.|+++|.||++||.+ +. .+.+ .+..- +.+|+. .+.|+.+++.+++||.+|... +
T Consensus 74 ~~~~~~~~~IDlN~GCP~~--~v--~~~g------~Ga~L---l~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~ 140 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP--KV--TKGG------AGAAL---LKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEET 140 (309)
T ss_dssp HHCCTT-SEEEEEE---SH--HH--HHCT-------GGGG---GC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHH
T ss_pred hhhccCCcEEeccCCCCHH--HH--hcCC------cChhh---hcChHHhhHHHHhhhcccccceEEecccccccchhHH
Confidence 8888899999999999963 11 1111 11111 356776 778999999999999999973 2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEch----
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGR---- 289 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~---- 289 (349)
.+.++.+.++|+++|+|++....|.+.+++.|+.+.++++.+ ++|||++|||.|.+|+.+.+. .|+|+|||||
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 356889999999999995444446677899999999999988 699999999999999999998 5999999999
Q ss_pred -HHHHHH---hhcCH----HHHHHHHHHHHHHHHHHHHHcCC-CChhhhcccceec
Q 018919 290 -PVVYSL---AAEGE----KGVRRVLEMLREEFELAMALSGC-RSLKEITRDHIVT 336 (349)
Q Consensus 290 -~~l~~~---~~~G~----~gv~~~l~~l~~el~~~m~~~G~-~~i~~l~~~~l~~ 336 (349)
||+|.. ...|. ..+.+.++.+.++++.+....|. ..+..++++..+.
T Consensus 219 nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y 274 (309)
T PF01207_consen 219 NPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWY 274 (309)
T ss_dssp -CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCC
T ss_pred cCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 556641 11111 11456677778888877777763 4566666665443
No 56
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.82 E-value=4e-18 Score=160.83 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=149.2
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCCC-----------------------------
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS----------------------------- 112 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~~----------------------------- 112 (349)
|+++|+++++||++|.-... .+..+.+.+.+.|..+++. |.+..
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999995331 2456777788888776652 22110
Q ss_pred ------CHH----HHHhh--C-C-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc
Q 018919 113 ------SVE----EVAST--G-P-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (349)
Q Consensus 113 ------~~e----~i~~~--~-~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~ 178 (349)
.++ ++.+. . + .+.++|+.. .+++...+.++.+++.|+++|++|++||.....
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~------------- 140 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGG------------- 140 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------------
Confidence 111 22221 1 2 567889876 477888889999999999999999999863210
Q ss_pred CcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec--C----HHHHHHHHHcCCCEEEEecCC-CCC------------
Q 018919 179 LTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL--T----AEDARIAVQAGAAGIIVSNHG-ARQ------------ 238 (349)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~--~----~~~a~~a~~~G~d~I~v~~~g-g~~------------ 238 (349)
+.. ..++++ .+.++++|+.+++||++|... + .+.++.+.++|+|+|+++|+- ++.
T Consensus 141 ---~~~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~ 215 (289)
T cd02810 141 ---RQL--GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKR 215 (289)
T ss_pred ---ccc--ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCC
Confidence 000 124555 677999999889999999863 3 356788999999999998741 110
Q ss_pred CC---Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 239 LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 239 ~~---~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.. .|+ ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||+++.
T Consensus 216 ~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 216 GTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred CCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 01 122 24677888888775479999999999999999999999999999999986
No 57
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.81 E-value=2.5e-19 Score=169.15 Aligned_cols=145 Identities=26% Similarity=0.354 Sum_probs=116.4
Q ss_pred CCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----C--CCCchhhHHHHHHHHHHhcC-
Q 018919 188 DLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQG- 258 (349)
Q Consensus 188 ~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~--~~~~~~~~~~l~~i~~~~~~- 258 (349)
.+..+ .+.|+|+|+.+ .+.||...+.+.+.|+.++++|||++.|.-..|. | ...|.|+..++.++++....
T Consensus 274 GnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~ 353 (503)
T KOG2550|consen 274 GNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQF 353 (503)
T ss_pred CcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhc
Confidence 34556 89999999998 6789999999999999999999999999754442 2 34567777777777765532
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH--------------------HHHHhh---------------------
Q 018919 259 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPV--------------------VYSLAA--------------------- 297 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~--------------------l~~~~~--------------------- 297 (349)
.+|||+||||++..+++|||.+||++||+|.-+ +++++.
T Consensus 354 gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvki 433 (503)
T KOG2550|consen 354 GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKI 433 (503)
T ss_pred CCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEee
Confidence 799999999999999999999999999999844 122210
Q ss_pred -cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 298 -EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 298 -~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
+|. -.+.+++..+...++..++..|++++++++..
T Consensus 434 AQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 434 AQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred ccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 111 13788999999999999999999999999754
No 58
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.81 E-value=3.8e-18 Score=163.76 Aligned_cols=207 Identities=19% Similarity=0.242 Sum_probs=138.9
Q ss_pred cceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCCC---------------------------
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWSTS--------------------------- 112 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~~--------------------------- 112 (349)
++|+++|+++.+||++|. +. +. +....+...+.|..+++ .|.+..
T Consensus 46 L~~~~~Gl~l~NPi~lAs-G~----~~--~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n 118 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAA-GF----DK--DGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNN 118 (335)
T ss_pred CcEEECCEECCCCcEeCC-cc----CC--CHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCC
Confidence 899999999999999965 32 22 33466666777877765 232210
Q ss_pred -CH----HHHHhhCC-CceEEEEeecC---ChhHHHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhhcCCCCcCcc
Q 018919 113 -SV----EEVASTGP-GIRFFQLYVYK---DRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (349)
Q Consensus 113 -~~----e~i~~~~~-~~~~~Ql~~~~---~~~~~~~~~~~~~~~G--~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~ 181 (349)
.+ +++.+... .+.++.+..+. ..+...+.++.+++.+ ++++++|+.||... + .
T Consensus 119 ~G~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~--------------~--~ 182 (335)
T TIGR01036 119 HGADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP--------------G--L 182 (335)
T ss_pred hhHHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC--------------C--c
Confidence 01 12222111 34556654332 1122345555555544 99999999998531 0 0
Q ss_pred cccCCCCCCch-HHHHHHHHHhcC-------CcEEEEEecC------HHHHHHHHHcCCCEEEEecCCC-----------
Q 018919 182 KNFQGLDLGKM-DEDVKWLQTITK-------LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA----------- 236 (349)
Q Consensus 182 ~~~~~~~~~~~-~~~i~~i~~~~~-------~pv~vK~v~~------~~~a~~a~~~G~d~I~v~~~gg----------- 236 (349)
+. ..+++. .+.++++++.++ +||++|...+ .+.|+.+.++|+|+|++.|+-.
T Consensus 183 ~~---~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~ 259 (335)
T TIGR01036 183 RD---LQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNS 259 (335)
T ss_pred cc---ccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCcccc
Confidence 11 234555 566888888776 9999999753 2457889999999999998521
Q ss_pred --CCCCCchh----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 --RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 --~~~~~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
...-+|++ .+..+.++++.+++++|||+.|||.+++|+.++|.+||++|++||++++
T Consensus 260 ~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 260 DETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 00112332 4567777777776679999999999999999999999999999999986
No 59
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.81 E-value=5.5e-18 Score=166.00 Aligned_cols=257 Identities=22% Similarity=0.216 Sum_probs=179.3
Q ss_pred eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHH
Q 018919 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 68 ~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~ 147 (349)
..+..||.++.|+++++ .++...++|+++.+.|+.+..++.+- +++.. ...+..+.|+- +.....+.+.+
T Consensus 163 ~~i~~~~~~~aMS~GAl-S~eA~~alA~a~~~~G~~sntGEGGe-~~~~~--~~~~s~I~Qva-SGRFGV~~~yL----- 232 (485)
T COG0069 163 LELKKRFVTGAMSFGAL-SKEAHEALARAMNRIGTKSNTGEGGE-DPERY--EDGRSAIKQVA-SGRFGVTPEYL----- 232 (485)
T ss_pred ceeeecccccccCCccc-cHHHHHHHHHHHHHhcCcccCCCCCC-CHHHh--ccccceEEEec-cccCccCHHHh-----
Confidence 56678999999999987 45678899999999999887776653 44433 12245678853 33444444433
Q ss_pred cCCCEEEEecCC---CCCC-----chh-HHhhhhcCCCCcCccccc---CCCCCCch-HHHHHHHHHhc-CCcEEEEEec
Q 018919 148 AGFKAIALTVDT---PRLG-----RRE-ADIKNRFTLPPFLTLKNF---QGLDLGKM-DEDVKWLQTIT-KLPILVKGVL 213 (349)
Q Consensus 148 ~G~~~i~i~~d~---p~~g-----~r~-~d~~~~~~~p~~~~~~~~---~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~ 213 (349)
..+++|+|-+.. |..| .+. ..+...-.+|++++.-.. ....+++. ...|..+|+.. ..+|.||.+.
T Consensus 233 ~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva 312 (485)
T COG0069 233 ANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVA 312 (485)
T ss_pred CccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 346677777753 2111 111 111111123444432111 11222222 34477777765 4679999984
Q ss_pred --CHHHHHH-HHHcCCCEEEEecC-CCCC-------CCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHH
Q 018919 214 --TAEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 214 --~~~~a~~-a~~~G~d~I~v~~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~ka 277 (349)
..+.+.. +.+++||.|+|+++ ||+. ...|.|....|.++.+.+ ++++.|+++||++|+.||+|+
T Consensus 313 ~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka 392 (485)
T COG0069 313 EHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKA 392 (485)
T ss_pred ccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHH
Confidence 3455544 89999999999997 4542 235777777788887765 467999999999999999999
Q ss_pred HHhCCCEEEEchHHHHHHhhc-----------------------------CHHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 018919 278 LALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALSGCRSLKE 328 (349)
Q Consensus 278 l~~GA~~V~ig~~~l~~~~~~-----------------------------G~~gv~~~l~~l~~el~~~m~~~G~~~i~~ 328 (349)
++||||.|.+||+.+.++.|. .++.|.+++..+.+|++.+|+.+|.+++++
T Consensus 393 ~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~e 472 (485)
T COG0069 393 AALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSE 472 (485)
T ss_pred HHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999988651 357899999999999999999999999999
Q ss_pred hcccce
Q 018919 329 ITRDHI 334 (349)
Q Consensus 329 l~~~~l 334 (349)
|.++..
T Consensus 473 l~g~~d 478 (485)
T COG0069 473 LIGRTD 478 (485)
T ss_pred Hhcchh
Confidence 996543
No 60
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.80 E-value=3.9e-18 Score=155.54 Aligned_cols=199 Identities=21% Similarity=0.249 Sum_probs=147.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC-C-----HH--HHHhhCC--CceEEEEeecCChhHHHHHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-----VE--EVASTGP--GIRFFQLYVYKDRNVVAQLV 142 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~-~-----~e--~i~~~~~--~~~~~Ql~~~~~~~~~~~~~ 142 (349)
|+++|||-+.+ +.+++..+.++|...++++|-.. + -+ ......+ .+..+||.. .+++...+.+
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g-~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGG-SDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcC-CCHHHHHHHH
Confidence 58999998765 78999999999988888877321 1 11 1111122 578899976 5788888999
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH------
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA------ 215 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~------ 215 (349)
+++.++|+++|+||+.||..-.|. .++. ... ..++++ .+.++.+++..+.|+.+|.....
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~G------~~l---~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~ 140 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGAG------AAL---LKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEET 140 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCee------ehh---cCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHH
Confidence 999999999999999998531110 0110 000 124566 67899999988899999986322
Q ss_pred -HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 216 -EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 216 -~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
+.++.+.++|+|+|.+++....+...++..++.+.++++.+ ++||+++|||++.+|+.++++. |||+|++||+++.
T Consensus 141 ~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 141 LELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 34677888999999995432222234456788888888765 7999999999999999999997 8999999999885
No 61
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.79 E-value=2.5e-18 Score=162.84 Aligned_cols=223 Identities=22% Similarity=0.280 Sum_probs=140.3
Q ss_pred cceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCCC-------C--------------------
Q 018919 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST-------S-------------------- 112 (349)
Q Consensus 61 ~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~-~~~~-------~-------------------- 112 (349)
++|+++|+++++||++|. +. .. +....+.+.+.|..+++. +.+. .
T Consensus 2 L~~~~~Gl~l~nPi~~as-G~----~~--~~~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n 74 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS-GL----DK--NGEEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPN 74 (295)
T ss_dssp G-EEETTEEESSSEEE-T-TS----ST--SSHHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-B
T ss_pred ccEEECCEEcCCCcEECC-cC----CC--CchhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccccCCCh
Confidence 689999999999999986 32 12 223445666777666542 2110 0
Q ss_pred -CH----HHHHhh---CC----CceEEEEeecCC---hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC
Q 018919 113 -SV----EEVAST---GP----GIRFFQLYVYKD---RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (349)
Q Consensus 113 -~~----e~i~~~---~~----~~~~~Ql~~~~~---~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~ 177 (349)
.+ +++.+. .. .+.++.+.. .+ .+...+.+++++ .|+|++++|+.||... ..+.
T Consensus 75 ~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~~-~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~-~~~~--------- 142 (295)
T PF01180_consen 75 PGLEYYLERLRPILKEAKKDVDIPVIASING-DSEEEIEDWAELAKRLE-AGADALELNLSCPNVP-GGRP--------- 142 (295)
T ss_dssp SHHHHHHHHHHHTHHHTTCH-CEEEEEEE-T-SSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST-TSGG---------
T ss_pred HHHHHHHHHHHHHhhhcccccceeEEEEeec-CCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC-Cccc---------
Confidence 01 112111 11 133344433 23 344455556555 8899999999998641 0000
Q ss_pred cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC---H---HHHHHHHHcCCCEEEEecCCC----------CC-C
Q 018919 178 FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT---A---EDARIAVQAGAAGIIVSNHGA----------RQ-L 239 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~---~---~~a~~a~~~G~d~I~v~~~gg----------~~-~ 239 (349)
. ..+++. .+.++++++..++||++|+..+ . +.+..+.+.|+|+|++.|.-. +. .
T Consensus 143 ---~-----~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~ 214 (295)
T PF01180_consen 143 ---F-----GQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVL 214 (295)
T ss_dssp ---G-----GGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESS
T ss_pred ---c-----ccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceee
Confidence 0 012333 4567888888899999999752 2 335556688999999877411 01 1
Q ss_pred ---C---Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHH
Q 018919 240 ---D---YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEM 309 (349)
Q Consensus 240 ---~---~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~ 309 (349)
. +| +.++..+.++++.++.++|||+.|||.|++|++++|.+||++||++|++++. |+ .+++.
T Consensus 215 ~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp----~~~~~ 286 (295)
T PF01180_consen 215 GNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GP----GVIRR 286 (295)
T ss_dssp SGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GT----THHHH
T ss_pred ccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----Cc----HHHHH
Confidence 1 22 2357788888888866799999999999999999999999999999999873 56 36788
Q ss_pred HHHHHHHHH
Q 018919 310 LREEFELAM 318 (349)
Q Consensus 310 l~~el~~~m 318 (349)
+.+||+.+|
T Consensus 287 i~~~L~~~l 295 (295)
T PF01180_consen 287 INRELEEWL 295 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 888888877
No 62
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.79 E-value=3.6e-18 Score=156.04 Aligned_cols=188 Identities=15% Similarity=0.103 Sum_probs=133.3
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCC----------------------CCHHHH----Hhh--CCCc
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------------------SSVEEV----AST--GPGI 124 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~----------------------~~~e~i----~~~--~~~~ 124 (349)
|+++|||+|.+ +.+++++..+.+...+++.++. .+++-+ ... .+.+
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p 74 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVL 74 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCe
Confidence 89999999865 6689996555555556654331 112211 111 1246
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc
Q 018919 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT 203 (349)
Q Consensus 125 ~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~ 203 (349)
..+|++. .+++...+.++.+++. .+.|+||++||+.... ..+.+..- +.+|+. .+.++.+++ .
T Consensus 75 ~~vqi~g-~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~----------~~g~G~~L---l~~p~~l~eiv~avr~-~ 138 (233)
T cd02911 75 VGVNVRS-SSLEPLLNAAALVAKN-AAILEINAHCRQPEMV----------EAGAGEAL---LKDPERLSEFIKALKE-T 138 (233)
T ss_pred EEEEecC-CCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHh----------cCCcchHH---cCCHHHHHHHHHHHHh-c
Confidence 7899987 6888888888888774 6999999999963100 00000000 346666 677999987 6
Q ss_pred CCcEEEEEec-----CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 018919 204 KLPILVKGVL-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 278 (349)
Q Consensus 204 ~~pv~vK~v~-----~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal 278 (349)
++||.+|... +.+.++.+.++|+|+|.+++. . .+....++.+.+++ . ++|||++|||.+++|+.+++
T Consensus 139 ~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~--~--~g~~ad~~~I~~i~--~--~ipVIgnGgI~s~eda~~~l 210 (233)
T cd02911 139 GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAM--D--PGNHADLKKIRDIS--T--ELFIIGNNSVTTIESAKEMF 210 (233)
T ss_pred CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcC--C--CCCCCcHHHHHHhc--C--CCEEEEECCcCCHHHHHHHH
Confidence 9999999973 346688899999999877532 1 12345677777775 3 79999999999999999999
Q ss_pred HhCCCEEEEchH
Q 018919 279 ALGASGIFIGRP 290 (349)
Q Consensus 279 ~~GA~~V~ig~~ 290 (349)
..|||+||+||+
T Consensus 211 ~~GaD~VmiGR~ 222 (233)
T cd02911 211 SYGADMVSVARA 222 (233)
T ss_pred HcCCCEEEEcCC
Confidence 999999999995
No 63
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.78 E-value=1.8e-17 Score=179.07 Aligned_cols=251 Identities=21% Similarity=0.148 Sum_probs=173.6
Q ss_pred cCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcC
Q 018919 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G 149 (349)
+-.+|.++.|++++++ ++...++|+++...|+....++.. .+.++... .....++|+-. .....+.+.+. .
T Consensus 857 I~~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~QiaS-GrFGv~~e~l~-----~ 927 (1485)
T PRK11750 857 LFKRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVAS-GRFGVTPAYLV-----N 927 (1485)
T ss_pred HhcccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEccC-CcCCCCHHHhc-----c
Confidence 3346899999999874 567889999999999998777665 35555422 22346788733 33333334432 3
Q ss_pred CCEEEEecCC---CCCC-----chh-HHhhhhcCCCCcCccc---ccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCH
Q 018919 150 FKAIALTVDT---PRLG-----RRE-ADIKNRFTLPPFLTLK---NFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTA 215 (349)
Q Consensus 150 ~~~i~i~~d~---p~~g-----~r~-~d~~~~~~~p~~~~~~---~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~ 215 (349)
++.|+|.+.. |..| .+. ..+..-..+|++++.- ...+..+.+. .+.|.++|+.. +.||.||.+...
T Consensus 928 a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~ 1007 (1485)
T PRK11750 928 AEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEP 1007 (1485)
T ss_pred CCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 7888888864 2111 111 1111112234443321 1111223333 34577888876 679999998432
Q ss_pred ---HHHHHHHHcCCCEEEEecCC-CCC-------CCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHH
Q 018919 216 ---EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 216 ---~~a~~a~~~G~d~I~v~~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~ 279 (349)
..+..++++|+|.|+|+++. |+. .+.|.|....|.++.+.+ ++++.++++||++|+.|++||++
T Consensus 1008 ~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~a 1087 (1485)
T PRK11750 1008 GVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAI 1087 (1485)
T ss_pred CccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHH
Confidence 34446788999999999984 442 134566555677777765 45799999999999999999999
Q ss_pred hCCCEEEEchHHHHHHhhc----------------------------CHHHHHHHHHHHHHHHHHHHHHcCCCChhhh
Q 018919 280 LGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFELAMALSGCRSLKEI 329 (349)
Q Consensus 280 ~GA~~V~ig~~~l~~~~~~----------------------------G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l 329 (349)
||||.|.+||++|.+++|. ..+.|.+++..+.+|++.+|+.+|.++++|+
T Consensus 1088 LGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~s~~el 1165 (1485)
T PRK11750 1088 LGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDL 1165 (1485)
T ss_pred cCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 9999999999999988651 1357899999999999999999999999999
No 64
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.78 E-value=2.4e-17 Score=156.48 Aligned_cols=183 Identities=21% Similarity=0.256 Sum_probs=136.9
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------HhhCCCceEEEEeecCChh
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~~~~~~~~Ql~~~~~~~ 136 (349)
+++|.+ .||+.|||++.+ +..|+.+++++|..++++... .+++++ ++...+++.+.+.... +.
T Consensus 6 ~~lgi~--~Pii~apM~~~s------~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~-~~ 75 (307)
T TIGR03151 6 DLLGIE--YPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLS-PF 75 (307)
T ss_pred HHhCCC--CCEEcCCCCCCC------CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCC-CC
Confidence 445554 699999998743 448999999999999997543 344433 2222356666664422 22
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
..+.++.+.+.|++.+.++...| .+.++++++. +++++. .+.+.+
T Consensus 76 -~~~~~~~~~~~~v~~v~~~~g~p--------------------------------~~~i~~lk~~-g~~v~~-~v~s~~ 120 (307)
T TIGR03151 76 -VDELVDLVIEEKVPVVTTGAGNP--------------------------------GKYIPRLKEN-GVKVIP-VVASVA 120 (307)
T ss_pred -HHHHHHHHHhCCCCEEEEcCCCc--------------------------------HHHHHHHHHc-CCEEEE-EcCCHH
Confidence 34567777888999887643221 2467888775 788776 578999
Q ss_pred HHHHHHHcCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 217 DARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+++.+.++|+|.|++.++ ||+. +..+++..++++++.+ ++|||++|||.+++|+.+++++||++|++|+.|+..
T Consensus 121 ~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred HHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcc
Confidence 999999999999999875 4432 2345789999999887 799999999999999999999999999999999865
Q ss_pred H
Q 018919 295 L 295 (349)
Q Consensus 295 ~ 295 (349)
.
T Consensus 197 ~ 197 (307)
T TIGR03151 197 K 197 (307)
T ss_pred c
Confidence 4
No 65
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.76 E-value=9.6e-17 Score=154.16 Aligned_cols=187 Identities=26% Similarity=0.363 Sum_probs=119.7
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------HhhCCCceEEEEeecCCh
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDR 135 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~~~~~~~~Ql~~~~~~ 135 (349)
|+++|.+ .||+.+||++.+ +| .|+.+++++|..++++... .+.+++ ++...+++.++++.....
T Consensus 5 t~~lgi~--~PIiqapM~~is--~~----~LaaAVs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~ 75 (330)
T PF03060_consen 5 TELLGIK--YPIIQAPMGGIS--TP----ELAAAVSNAGGLGFLGAGG-LTPEQLREEIRKIRALTDKPFGVNLFLPPPD 75 (330)
T ss_dssp HHHHT-S--SSEEE---TTTS--SH----HHHHHHHHTTSBEEEECTT-SSHHHHHHHHHHHHHH-SS-EEEEEETTSTT
T ss_pred HHHhCCC--cCEEcCCCCCCC--hH----HHHHHHHhCCCEeeccccc-cChHHHHHHHHHHHhhccccccccccccCcc
Confidence 3455655 699999998743 44 8999999999999998543 344433 333345777887664332
Q ss_pred hHHH----------HHHHHHHHcCC--------------CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 136 NVVA----------QLVRRAERAGF--------------KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 136 ~~~~----------~~~~~~~~~G~--------------~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
.... ...+...+.+. +.+..+.+.|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~------------------------------ 125 (330)
T PF03060_consen 76 PADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPP------------------------------ 125 (330)
T ss_dssp HHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-------------------------------
T ss_pred cchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccch------------------------------
Confidence 2111 11222233343 36665554331
Q ss_pred hHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecC--CCCCC-CCchhhHHHHHHHHHHhcCCCcEEEecCC
Q 018919 192 MDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 192 ~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~--gg~~~-~~~~~~~~~l~~i~~~~~~~ipvia~GGI 268 (349)
.+.++++++ .++.++. .+.+.++|+.+.++|+|+|++.+. ||+.. +.+ +++..++++++.+ ++|||+.|||
T Consensus 126 -~~~i~~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPViaAGGI 199 (330)
T PF03060_consen 126 -PEVIERLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVIAAGGI 199 (330)
T ss_dssp -HHHHHHHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EEEESS-
T ss_pred -HHHHHHHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEEEecCc
Confidence 245777765 4888776 578999999999999999999874 66543 122 5788899999888 6999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.++.++..+|++||++|++||.|+..
T Consensus 200 ~dg~~iaaal~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 200 ADGRGIAAALALGADGVQMGTRFLAT 225 (330)
T ss_dssp -SHHHHHHHHHCT-SEEEESHHHHTS
T ss_pred CCHHHHHHHHHcCCCEeecCCeEEec
Confidence 99999999999999999999999854
No 66
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.73 E-value=1.9e-16 Score=145.27 Aligned_cols=260 Identities=22% Similarity=0.306 Sum_probs=164.7
Q ss_pred hHHHHHHHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCC
Q 018919 33 QWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWST 111 (349)
Q Consensus 33 ~~t~~~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~ 111 (349)
|.++|.-. .+-.|.+.||.-.. ++..+.++++|+++++||++|+ ++. . +..-.......|..++ +++..+
T Consensus 58 E~sHrlAv-~aas~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA-Gfd----k--~~eaidgL~~~gfG~ieigSvTp 128 (398)
T KOG1436|consen 58 EFSHRLAV-LAASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA-GFD----K--NAEAIDGLANSGFGFIEIGSVTP 128 (398)
T ss_pred HHHHHHHH-HHHHhCCCchhccC-CccchhhHHhhhhccCchhhhh-ccC----c--chHHHHHHHhCCCceEEeccccc
Confidence 33444433 24567788875332 4567789999999999999998 443 2 2234455556777766 444433
Q ss_pred CCHHHHHhhCCCce-------------------------------------------EEEEeecC-ChhHHHHHHHHHHH
Q 018919 112 SSVEEVASTGPGIR-------------------------------------------FFQLYVYK-DRNVVAQLVRRAER 147 (349)
Q Consensus 112 ~~~e~i~~~~~~~~-------------------------------------------~~Ql~~~~-~~~~~~~~~~~~~~ 147 (349)
.+ ++-+|.|+ .+.+-.++ +.+...+.++-+..
T Consensus 129 ~p----qeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~ 204 (398)
T KOG1436|consen 129 KP----QEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRV 204 (398)
T ss_pred CC----CCCCCCCceEecccccchhhccCCCcccHHHHHHHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhh
Confidence 21 11122222 23332222 23344455555554
Q ss_pred cC--CCEEEEecCCCCC-CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH---HHh--c--CCcEEEEEecCH--
Q 018919 148 AG--FKAIALTVDTPRL-GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL---QTI--T--KLPILVKGVLTA-- 215 (349)
Q Consensus 148 ~G--~~~i~i~~d~p~~-g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i---~~~--~--~~pv~vK~v~~~-- 215 (349)
.| +|.++||++||.. |.| .. +.+.++.+.+.++ +.. + +.|+.+|...+.
T Consensus 205 ~g~~adylviNvSsPNtpGlr-----------------~l--q~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~ 265 (398)
T KOG1436|consen 205 FGPFADYLVINVSSPNTPGLR-----------------SL--QKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSE 265 (398)
T ss_pred cccccceEEEeccCCCCcchh-----------------hh--hhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhH
Confidence 43 5556666666642 111 11 0111111222222 222 1 358999987543
Q ss_pred ----HHHHHHHHcCCCEEEEecCCC-C----------CCC---Cch----hhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 216 ----EDARIAVQAGAAGIIVSNHGA-R----------QLD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 216 ----~~a~~a~~~G~d~I~v~~~gg-~----------~~~---~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
+.+....+.+.|+++++|..- | .-. +|+ .+.+.++++...++++||||.+|||.||.|
T Consensus 266 ~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~D 345 (398)
T KOG1436|consen 266 KELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKD 345 (398)
T ss_pred HHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHh
Confidence 345556689999999997521 1 001 232 356788888888888999999999999999
Q ss_pred HHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 274 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 274 v~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
+.+-+.+||+.||+++++.| .|+ .+++.++.||...|...|+.++.|+.+.
T Consensus 346 A~EkiraGASlvQlyTal~y----eGp----~i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 346 AYEKIRAGASLVQLYTALVY----EGP----AIIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHHhcCchHHHHHHHHhh----cCc----hhHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 99999999999999999987 366 3788999999999999999999998765
No 67
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.7e-16 Score=149.12 Aligned_cols=194 Identities=23% Similarity=0.287 Sum_probs=148.4
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC-CH---HHHH----hhCC--CceEEEEeecCChhHHHHHHHH
Q 018919 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-SV---EEVA----STGP--GIRFFQLYVYKDRNVVAQLVRR 144 (349)
Q Consensus 75 ~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~-~~---e~i~----~~~~--~~~~~Ql~~~~~~~~~~~~~~~ 144 (349)
++|||-..+ +.++++.++..|...+++.|-.. ++ |.-+ ...+ .|.++|+-. +|++.+.+.++.
T Consensus 22 i~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~-ndp~~ll~Aa~l 94 (358)
T KOG2335|consen 22 IVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGG-NDPENLLKAARL 94 (358)
T ss_pred ccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcC-CCHHHHHHHHHH
Confidence 699996543 88999999999999888876311 00 1111 1123 689999755 799999998888
Q ss_pred HHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec------CHHH
Q 018919 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL------TAED 217 (349)
Q Consensus 145 ~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~------~~~~ 217 (349)
+...+ |+|.||++||.. . -.+.+|. ... +.++++ -+.++.+++.++.||.+|+.. |.+.
T Consensus 95 v~~y~-D~idlNcGCPq~--~--a~~g~yG------a~L---~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ 160 (358)
T KOG2335|consen 95 VQPYC-DGIDLNCGCPQK--V--AKRGGYG------AFL---MDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDY 160 (358)
T ss_pred hhhhc-CcccccCCCCHH--H--HhcCCcc------cee---ccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHH
Confidence 88776 999999999842 0 0111221 100 346677 678999999999999999973 5577
Q ss_pred HHHHHHcCCCEEEEecCCCCC----CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~----~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~~~l 292 (349)
++.+.++|++.++| ||.+. ...++..++.+..+++.+++ +||+++|+|.+.+|+-.++. .||++||+|+..|
T Consensus 161 ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL 237 (358)
T KOG2335|consen 161 AKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILSLEDVERCLKYTGADGVMSARGLL 237 (358)
T ss_pred HHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhh
Confidence 99999999999999 66642 22578889999999999854 99999999999999999999 8999999999544
No 68
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.69 E-value=8.2e-16 Score=139.54 Aligned_cols=151 Identities=14% Similarity=0.056 Sum_probs=115.0
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQT 201 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~ 201 (349)
.+.++|+.. .+++...+.++.+.+ ++++|+||+.||++-.. ..+.+... +.||+. .+.++.+++
T Consensus 68 ~~vivnv~~-~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~----------~~g~G~~L---l~dp~~l~~iv~av~~ 132 (231)
T TIGR00736 68 ALVSVNVRF-VDLEEAYDVLLTIAE-HADIIEINAHCRQPEIT----------EIGIGQEL---LKNKELLKEFLTKMKE 132 (231)
T ss_pred CCEEEEEec-CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHc----------CCCCchhh---cCCHHHHHHHHHHHHc
Confidence 578899865 688888888877755 89999999999963000 00001111 356776 677888884
Q ss_pred hcCCcEEEEEecC------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 202 ITKLPILVKGVLT------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 202 ~~~~pv~vK~v~~------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
.++||.+|+... .+.++.+.++|+|+|+|. .++. ..+...++.+.++++.++ ++|||++|||++++|+.
T Consensus 133 -~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~-g~~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~ 207 (231)
T TIGR00736 133 -LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD--AMYP-GKPYADMDLLKILSEEFN-DKIIIGNNSIDDIESAK 207 (231)
T ss_pred -CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe--eCCC-CCchhhHHHHHHHHHhcC-CCcEEEECCcCCHHHHH
Confidence 589999999852 366899999999999994 3221 112267999999999873 49999999999999999
Q ss_pred HHHHhCCCEEEEchHHHH
Q 018919 276 KALALGASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~ 293 (349)
+++..|||+||+||+.+.
T Consensus 208 e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 208 EMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHHhCCCeEEEcHhhcc
Confidence 999999999999998875
No 69
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.64 E-value=3.9e-14 Score=129.58 Aligned_cols=187 Identities=25% Similarity=0.320 Sum_probs=130.7
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHH-------HHhhCCCceEEEEeecCChhHHHHHHH
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDRNVVAQLVR 143 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~-------i~~~~~~~~~~Ql~~~~~~~~~~~~~~ 143 (349)
..|+++|||.+.+ +..+++++.+.|....++... .+.++ +++....+..++++.........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999998754 458999999999766664322 12222 222221245577766321134567888
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHH
Q 018919 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQ 223 (349)
Q Consensus 144 ~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~ 223 (349)
.+.++|++++.++-..+ .+.++++++ .+++++.+ +.+.++++.+.+
T Consensus 75 ~~~~~g~d~v~l~~~~~--------------------------------~~~~~~~~~-~~i~~i~~-v~~~~~~~~~~~ 120 (236)
T cd04730 75 VALEEGVPVVSFSFGPP--------------------------------AEVVERLKA-AGIKVIPT-VTSVEEARKAEA 120 (236)
T ss_pred HHHhCCCCEEEEcCCCC--------------------------------HHHHHHHHH-cCCEEEEe-CCCHHHHHHHHH
Confidence 88999999988643210 234555554 47888765 567788999999
Q ss_pred cCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCH
Q 018919 224 AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 300 (349)
Q Consensus 224 ~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~ 300 (349)
.|+|+|.+.+. +|.........++.+.++++.+ ++||++.|||++++|+.+++++|||+|++||+++....+.+.
T Consensus 121 ~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~ 197 (236)
T cd04730 121 AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGAS 197 (236)
T ss_pred cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCC
Confidence 99999998653 2221111134577888888776 799999999999999999999999999999999986554444
No 70
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.63 E-value=2.6e-14 Score=135.11 Aligned_cols=182 Identities=17% Similarity=0.214 Sum_probs=130.9
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------Hhh-CCCceEEEEeecCChhHHHHHH
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------AST-GPGIRFFQLYVYKDRNVVAQLV 142 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~-~~~~~~~Ql~~~~~~~~~~~~~ 142 (349)
..||+.+||++.+ + ...|+.+.+++|...+++... .+.+++ ++. ..+|+.+++-...+.....+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~~-~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALAL-MRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCCC-CCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 4799999998754 2 147999999999998887543 344443 221 2367777774322223345678
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHH
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAV 222 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~ 222 (349)
+.+.+.+.+.+.++.+.| + .++++++ .+++++. .+.+++.|+++.
T Consensus 76 ~vi~e~~v~~V~~~~G~P--------------------------------~-~~~~lk~-~Gi~v~~-~v~s~~~A~~a~ 120 (320)
T cd04743 76 AVVRAIKPTFALIAGGRP--------------------------------D-QARALEA-IGISTYL-HVPSPGLLKQFL 120 (320)
T ss_pred HHHHhcCCcEEEEcCCCh--------------------------------H-HHHHHHH-CCCEEEE-EeCCHHHHHHHH
Confidence 888888998877654322 1 2566665 4888875 468999999999
Q ss_pred HcCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhc--------CCCcEEEecCCCCHHHHHHHHHhCC--------CE
Q 018919 223 QAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGA--------SG 284 (349)
Q Consensus 223 ~~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~ipvia~GGI~~~~dv~kal~~GA--------~~ 284 (349)
++|+|+|++.++ ||+. +..+++..++++.+.+. .++|||+.|||.++..+..++++|| ++
T Consensus 121 ~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~G 198 (320)
T cd04743 121 ENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVG 198 (320)
T ss_pred HcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccE
Confidence 999999999875 5653 23345556666655541 2699999999999999999999998 89
Q ss_pred EEEchHHHHHH
Q 018919 285 IFIGRPVVYSL 295 (349)
Q Consensus 285 V~ig~~~l~~~ 295 (349)
|++||.|+..-
T Consensus 199 V~mGTrFl~t~ 209 (320)
T cd04743 199 VLMGTAYLFTE 209 (320)
T ss_pred EEEccHHhcch
Confidence 99999998743
No 71
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=138.06 Aligned_cols=190 Identities=26% Similarity=0.310 Sum_probs=127.7
Q ss_pred CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC--CHH-HHH---hhCCCceEEEEee---------
Q 018919 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--SVE-EVA---STGPGIRFFQLYV--------- 131 (349)
Q Consensus 67 g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~--~~e-~i~---~~~~~~~~~Ql~~--------- 131 (349)
...+..||+.+||++.+ ...+|.+..+.|..++++..... .++ ++. +..+++...+.|.
T Consensus 10 ~~~i~~PIiq~gM~~vs------~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~ 83 (336)
T COG2070 10 LLGIKYPIIQGGMAGVS------TPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVN 83 (336)
T ss_pred ccCccCCeecCCccccC------cHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcCCcchhcccccccccchhh
Confidence 34566899999998743 44899999999999887655432 121 222 2222332111111
Q ss_pred -cCC-hhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEE
Q 018919 132 -YKD-RNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPIL 208 (349)
Q Consensus 132 -~~~-~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~ 208 (349)
... .....+.++.+.+. |...+..+...| + .+.++.++. .+..++
T Consensus 84 ~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~-----------------------------~--~~~i~~~~~-~g~~v~ 131 (336)
T COG2070 84 ILVARRNAAEAGVDAIIEGAGVPVVSTSFGAP-----------------------------P--AEFVARLKA-AGIKVI 131 (336)
T ss_pred eecccccchHHhhhhHHhcCCCCEEeccCCCC-----------------------------c--HHHHHHHHH-cCCeEE
Confidence 000 11122333333332 555444333211 1 356777776 677777
Q ss_pred EEEecCHHHHHHHHHcCCCEEEEecC--CCCCC--CCchhhHHHHHHHHHHhcCC-CcEEEecCCCCHHHHHHHHHhCCC
Q 018919 209 VKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 283 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~v~~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-ipvia~GGI~~~~dv~kal~~GA~ 283 (349)
.+ +.+...|+++.++|+|+|++.+. ||+.- +..++++.+++++++++ + +|||+.|||.++.++..||++||+
T Consensus 132 ~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg~~i~AAlalGA~ 208 (336)
T COG2070 132 HS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADGRGIAAALALGAD 208 (336)
T ss_pred EE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccChHHHHHHHHhccH
Confidence 64 67899999999999999999764 55432 23567789999999998 5 999999999999999999999999
Q ss_pred EEEEchHHHHHHhh
Q 018919 284 GIFIGRPVVYSLAA 297 (349)
Q Consensus 284 ~V~ig~~~l~~~~~ 297 (349)
+|++||.|+....+
T Consensus 209 gVq~GT~Fl~t~Ea 222 (336)
T COG2070 209 GVQMGTRFLATKEA 222 (336)
T ss_pred HHHhhhhhhccccc
Confidence 99999999865433
No 72
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.55 E-value=5e-13 Score=130.53 Aligned_cols=213 Identities=18% Similarity=0.160 Sum_probs=131.0
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH-------Hhh-C-CCceEEEEeec-C
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------AST-G-PGIRFFQLYVY-K 133 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i-------~~~-~-~~~~~~Ql~~~-~ 133 (349)
+++|+ ..|++.+||+++ .++ ..|+.+++++|..++++..+ .+++++ ++. . .+++.++|+.. .
T Consensus 8 ~~lgi--ryPii~gpMa~G-iss----~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYGL--RYAYVAGAMARG-IAS----AELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhCC--CccEECCcccCC-CCC----HHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 44555 469999999832 233 48999999999999998654 345544 222 2 35788888753 3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEe--cCCCCCCchhHH--hh-h--h-cCCCC----cCcccccC-CCCCCchHHHHHHHH
Q 018919 134 DRNVVAQLVRRAERAGFKAIALT--VDTPRLGRREAD--IK-N--R-FTLPP----FLTLKNFQ-GLDLGKMDEDVKWLQ 200 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~--~d~p~~g~r~~d--~~-~--~-~~~p~----~~~~~~~~-~~~~~~~~~~i~~i~ 200 (349)
+++...+.++.+.+.|++.++.. ++.+..-.+.+. ++ + + +..+. +++.+... -+..+..-+.+++++
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~ 159 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLL 159 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHH
Confidence 44444567888888999887643 221110011111 00 0 0 00000 00000000 011222245678877
Q ss_pred HhcCCcEEEEEecCHHHHHHHHHcC-CCEEEEec-CCCCCCCCchhhHHHHHHHHH---Hh------cCCCcEEEecCCC
Q 018919 201 TITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT------QGRIPVFLDGGVR 269 (349)
Q Consensus 201 ~~~~~pv~vK~v~~~~~a~~a~~~G-~d~I~v~~-~gg~~~~~~~~~~~~l~~i~~---~~------~~~ipvia~GGI~ 269 (349)
+. ++.|.++|+.+.+.| +|.|++.. .||+. +..+++..++.+.+ .+ ..++||++.|||.
T Consensus 160 ~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~ 229 (418)
T cd04742 160 AE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG 229 (418)
T ss_pred Hc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC
Confidence 64 234999999999999 59999974 25543 22234455555543 33 1259999999999
Q ss_pred CHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 270 RGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
++.++..++++||++|++||.|+..
T Consensus 230 tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 230 TPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred CHHHHHHHHHcCCcEEeeccHHHhC
Confidence 9999999999999999999999854
No 73
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=99.54 E-value=1.5e-14 Score=134.20 Aligned_cols=256 Identities=17% Similarity=0.153 Sum_probs=180.7
Q ss_pred ccccCCCCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhh---------
Q 018919 50 PRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST--------- 120 (349)
Q Consensus 50 p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~--------- 120 (349)
|..|.-++++|.+++..|.+..+|+.++.- .|.....+.+.|-..|.++++.-.....-..+...
T Consensus 92 ~k~~~~l~~ie~~vd~~G~k~~npf~~~s~------Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t 165 (471)
T KOG1799|consen 92 LKALLYLKSIEELVDWDGQKPANPFHQKSK------PPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPT 165 (471)
T ss_pred hhhhcchhhhhhhccccCccCCCccccCCC------CCCccHHHHHhhhhcccchhheeeeecchhhheecccceeeccC
Confidence 556667889999999999999999998763 34456678888888888877642211000001000
Q ss_pred -----CC-CceEEEE--ee-----------------------------cCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 121 -----GP-GIRFFQL--YV-----------------------------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 121 -----~~-~~~~~Ql--~~-----------------------------~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
.| ++.|..+ .. -.+...+.++.++.+++|++.+++|+.||+.
T Consensus 166 ~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphg- 244 (471)
T KOG1799|consen 166 KRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHG- 244 (471)
T ss_pred CCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCC-
Confidence 01 1111100 00 0122335678888899999999999999963
Q ss_pred chhHHhhhhcCCCC-cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCH----HHHHHHHHcCCCEEEEecC---
Q 018919 164 RREADIKNRFTLPP-FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH--- 234 (349)
Q Consensus 164 ~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~----~~a~~a~~~G~d~I~v~~~--- 234 (349)
+++ ++++... ++|.. .+...|++....+|++-|..++. |.|+.+.+.|+.+|...|+
T Consensus 245 -----------m~ergmgla~g---q~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~S 310 (471)
T KOG1799|consen 245 -----------MCERGMGLALG---QCPIVDCEVCGWINAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMS 310 (471)
T ss_pred -----------Cccccccceec---cChhhhHHHhhhhhhccccccccccCCCcccccccchhcCcccccchhhHhHHHH
Confidence 232 3444432 46666 67799999999999999998765 4577788899999987653
Q ss_pred --C-------------CCCCCC-------chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 235 --G-------------ARQLDY-------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 235 --g-------------g~~~~~-------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| |+.-.+ .|..+..+..|++.++ ..|+.+.|||.++.|.+.++.+|++.|++++..+
T Consensus 311 vM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~ 389 (471)
T KOG1799|consen 311 VMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVM 389 (471)
T ss_pred HhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHHH
Confidence 0 011112 2445667777777774 7999999999999999999999999999999886
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 293 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
. .|.. .++.+..||+..|.+.|+++|++++++.|.
T Consensus 390 ~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 390 M----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSLQ 424 (471)
T ss_pred h----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcchh
Confidence 4 3443 357889999999999999999999988653
No 74
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.53 E-value=7.6e-13 Score=130.01 Aligned_cols=211 Identities=20% Similarity=0.180 Sum_probs=129.7
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH-------hhCC-Cc-eEEEEeecC-
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGP-GI-RFFQLYVYK- 133 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~-------~~~~-~~-~~~Ql~~~~- 133 (349)
+++|++ .|++.+||+++ .++ ..|+.+++++|..++++..+ .+++++. +..+ ++ +.++|+.+.
T Consensus 13 ~~lgir--yPiiqgpMa~G-iSs----~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYGVR--YAYVAGAMANG-IAS----AELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhCCC--CcEECccccCC-CCC----HHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 445554 69999999832 233 48999999999999998654 3555543 2223 35 888887643
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEe--cC-CCCCCchhHHhhhhcC-CCCc-Ccc-----cccC------CCCCCchHHHHH
Q 018919 134 DRNVVAQLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRFT-LPPF-LTL-----KNFQ------GLDLGKMDEDVK 197 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~--~d-~p~~g~r~~d~~~~~~-~p~~-~~~-----~~~~------~~~~~~~~~~i~ 197 (349)
+++.-.+.++.+.+.|++.++.. ++ +|.. .+.+. .++. .+.+ +.. .... -...|..-+.++
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~ 161 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQ 161 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHH
Confidence 33333456777778899887653 12 1211 11110 0110 0000 000 0000 011111134566
Q ss_pred HHHHhcCCcEEEEEecCHHHHHHHHHcC-CCEEEEec-CCCCCCCCchhhHHHHHHHH---HHh------cCCCcEEEec
Q 018919 198 WLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVV---KAT------QGRIPVFLDG 266 (349)
Q Consensus 198 ~i~~~~~~pv~vK~v~~~~~a~~a~~~G-~d~I~v~~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~ipvia~G 266 (349)
.+++. ++.|+++|+.+.+.| +|.|++.. .||+. +..+++..++.+. +.+ ..++||++.|
T Consensus 162 ~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAG 231 (444)
T TIGR02814 162 KLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAG 231 (444)
T ss_pred HHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeC
Confidence 66653 334999999999999 59998863 25543 2234556666664 333 1268999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 267 GVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
||.+++++..++++||++|++||.|+...
T Consensus 232 GI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 232 GIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred CCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 99999999999999999999999998643
No 75
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.53 E-value=2.6e-12 Score=111.56 Aligned_cols=167 Identities=22% Similarity=0.261 Sum_probs=111.4
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEEee----cCChh--HHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQLYV----YKDRN--VVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql~~----~~~~~--~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
..||++|...|..++ ... ++++|++... +..++-|+. ..+.- -+.+.++.+.++|++.+.+ |+.
T Consensus 2 ~~mA~Aa~~gGA~gi-R~~---~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAl--DaT-- 73 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGI-RAN---GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIAL--DAT-- 73 (192)
T ss_dssp HHHHHHHHHCT-SEE-EEE---SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEE--E-S--
T ss_pred HHHHHHHHHCCceEE-EcC---CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEE--ecC--
Confidence 368999999998865 323 3566554332 333444543 11111 1467888899999999875 543
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD- 240 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~- 240 (349)
.|.| |.. .+.++++|+++ -+++-.+.+.|+++.|.++|+|.|-....|.+...
T Consensus 74 -~R~R----------------------p~~l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~ 128 (192)
T PF04131_consen 74 -DRPR----------------------PETLEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTK 128 (192)
T ss_dssp -SSS-----------------------SS-HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTST
T ss_pred -CCCC----------------------CcCHHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCC
Confidence 2222 222 57799999987 55556899999999999999999988777765321
Q ss_pred CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 241 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 241 ~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
...|.++.+.++++. .+|||+.|+|++++++.++|.+||++|.||+++-.
T Consensus 129 ~~~pD~~lv~~l~~~---~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 129 GDGPDFELVRELVQA---DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp TSSHHHHHHHHHHHT---TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred CCCCCHHHHHHHHhC---CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC
Confidence 256789999998864 79999999999999999999999999999999864
No 76
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.43 E-value=1.3e-11 Score=118.85 Aligned_cols=222 Identities=18% Similarity=0.153 Sum_probs=138.0
Q ss_pred ceeEcCeecCcceeecccccccc----cCC-hhhHHHHHHHHHcCCeEEecCCCCC--------------C---HH---H
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKM----AHP-EGEYATARAASAAGTIMTLSSWSTS--------------S---VE---E 116 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l----~~~-~~~~~la~aa~~~G~~~~~~~~~~~--------------~---~e---~ 116 (349)
..+|.+.++++-|+.|||....- ..+ +....+-+.-++.|+.+++++.... + ++ +
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 46788899999999999953211 112 2334566666777888877543110 1 11 1
Q ss_pred HHhh---CCCceEEEEeecCC---------------------------hh-------HHHHHHHHHHHcCCCEEEEecCC
Q 018919 117 VAST---GPGIRFFQLYVYKD---------------------------RN-------VVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 117 i~~~---~~~~~~~Ql~~~~~---------------------------~~-------~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
+.+. .....++||+-... .+ ...+.+++++++|+|+|+||..+
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 2111 12456788733100 01 12345567778999999999863
Q ss_pred CCCCchhHHhhhhcCCCCc--CcccccCCCCC-Cch-HHHHHHHHHhcCCcEEEEEec--------CHHH----HHHHHH
Q 018919 160 PRLGRREADIKNRFTLPPF--LTLKNFQGLDL-GKM-DEDVKWLQTITKLPILVKGVL--------TAED----ARIAVQ 223 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~--~~~~~~~~~~~-~~~-~~~i~~i~~~~~~pv~vK~v~--------~~~~----a~~a~~ 223 (349)
|. +-+.|..|.. -+..-+.++.+ ..| .+.++.+|+.++.||.+|+.. +.++ ++.+.+
T Consensus 166 ---Gy----Ll~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~ 238 (337)
T PRK13523 166 ---GY----LINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKE 238 (337)
T ss_pred ---ch----HHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHH
Confidence 11 1222322210 00000111111 235 678999999988999999863 4433 577888
Q ss_pred cCCCEEEEecCCCC----CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 224 AGAAGIIVSNHGAR----QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 224 ~G~d~I~v~~~gg~----~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+|+|.|.|+..... +...+. .++...++++.+ ++||++.|+|++++++.++|+.| ||+|++||+++.
T Consensus 239 ~gvD~i~vs~g~~~~~~~~~~~~~-~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 239 QGVDLIDVSSGAVVPARIDVYPGY-QVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred cCCCEEEeCCCCCCCCCCCCCccc-cHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 99999999643211 111111 456667777776 79999999999999999999976 999999999984
No 77
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.41 E-value=2.8e-11 Score=106.09 Aligned_cols=184 Identities=24% Similarity=0.247 Sum_probs=120.4
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCCC-------CC---HHHHHhhCCCceEEEEeecCChhHHHHHH
Q 018919 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST-------SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (349)
Q Consensus 74 i~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-~~~~~-------~~---~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~ 142 (349)
|++++|.+... +....+++.+.+.|+.++. .+... .. ++.+......+.++|++.....+.....+
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677765421 2346788999998876543 22111 11 23333333367789998744333333335
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecCHHHHHH
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLTAEDARI 220 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~~~~a~~ 220 (349)
+.+.++|++++.++..++.. +++ .+.++++++.+ +.|+++|.....+....
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~---------------------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~ 130 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL---------------------------AREDLELIRELREAVPDVKVVVKLSPTGELAAA 130 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH---------------------------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh
Confidence 78899999999998876421 222 56789999887 89999997644332222
Q ss_pred -HHHcCCCEEEEecCCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 221 -AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 221 -a~~~G~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+.+.|+|.|.++++...+...... ....+..+... .++||+++|||.+++++.+++++|||+|++||
T Consensus 131 ~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 131 AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 688999999998764432222111 12333333333 27999999999999999999999999999996
No 78
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.39 E-value=3.7e-11 Score=109.11 Aligned_cols=179 Identities=22% Similarity=0.179 Sum_probs=116.6
Q ss_pred CChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeec-CC--h--hHHHHHHHHHHHcCCCEEEEecCCC
Q 018919 86 HPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY-KD--R--NVVAQLVRRAERAGFKAIALTVDTP 160 (349)
Q Consensus 86 ~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~-~~--~--~~~~~~~~~~~~~G~~~i~i~~d~p 160 (349)
.++--..+++++.++|+..+.. .+...++++++....|+...+|.. .+ . ....+.++.+.++|++.+.+. .+
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d--~~ 97 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRA-NGVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALD--AT 97 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEc-CCHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEe--CC
Confidence 3333468999999999986542 222223334333223443333310 00 0 012356788999999976653 32
Q ss_pred CCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL 239 (349)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~ 239 (349)
.. ..| +... .+.++.+++..++|+++ .+.+.++++.+.++|+|.|.++++|.+..
T Consensus 98 ~~-----------~~p------------~~~~~~~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~ 153 (221)
T PRK01130 98 LR-----------PRP------------DGETLAELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEE 153 (221)
T ss_pred CC-----------CCC------------CCCCHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecC
Confidence 10 001 0012 35577776645777775 56789999999999999998765443221
Q ss_pred --CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 240 --DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 240 --~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
......++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|++++.
T Consensus 154 ~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 154 TKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred CCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 22334577888888877 79999999999999999999999999999998763
No 79
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.38 E-value=2.7e-11 Score=116.28 Aligned_cols=146 Identities=25% Similarity=0.235 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc--CcccccCCC-CCCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF--LTLKNFQGL-DLGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~--~~~~~~~~~-~~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
.+.+++++++|+|+|+||..+.. +-+.|..|.- -+...+.++ ....+ .+.++.+|+.+ +.||.+|..
T Consensus 144 ~~aA~~a~~aGfDgveih~~~gy-------L~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris 216 (327)
T cd02803 144 AAAARRAKEAGFDGVEIHGAHGY-------LLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLS 216 (327)
T ss_pred HHHHHHHHHcCCCEEEEcchhhh-------HHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Confidence 35556777899999999986421 1222322210 000000011 11234 67899999988 689999986
Q ss_pred c--------CHH----HHHHHHHcCCCEEEEecCCCCCCC--------CchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 213 L--------TAE----DARIAVQAGAAGIIVSNHGARQLD--------YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 213 ~--------~~~----~a~~a~~~G~d~I~v~~~gg~~~~--------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
. +.+ .++.+.++|+|+|.+++....+.. .....++.+..+++.+ ++||+++|||++++
T Consensus 217 ~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~ 294 (327)
T cd02803 217 ADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPE 294 (327)
T ss_pred hhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHH
Confidence 3 233 367888999999999764322111 1123456777777777 79999999999999
Q ss_pred HHHHHHHh-CCCEEEEchHHHH
Q 018919 273 DVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~-GA~~V~ig~~~l~ 293 (349)
++.++++. |||.|++||+++.
T Consensus 295 ~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 295 VAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHCCCCCeeeecHHHHh
Confidence 99999998 7999999999985
No 80
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.35 E-value=1.1e-10 Score=105.78 Aligned_cols=177 Identities=21% Similarity=0.181 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceE---EEEeecCCh--hHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF---FQLYVYKDR--NVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 89 ~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~---~Ql~~~~~~--~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
.-..+++++.+.|+..+ +-.+...++.+++...-|.. .+-|...+. +...+.++.+.++|++.+.+....-
T Consensus 28 ~i~~~a~~~~~~G~~~~-~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~--- 103 (219)
T cd04729 28 IMAAMALAAVQGGAVGI-RANGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDR--- 103 (219)
T ss_pred HHHHHHHHHHHCCCeEE-EcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCC---
Confidence 34589999999999754 32222223444433222322 111110000 1124577889999999877643210
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC--CCC
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDY 241 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~--~~~ 241 (349)
..|. +....+.++++++..++|+++ .+.++++++.+.++|+|.+.+.++|.+. ...
T Consensus 104 ----------~~p~-----------~~~~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~ 161 (219)
T cd04729 104 ----------PRPD-----------GETLAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKT 161 (219)
T ss_pred ----------CCCC-----------CcCHHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCC
Confidence 0010 011156688888765688876 4678999999999999999776554322 122
Q ss_pred chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 242 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 242 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..+.++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|++++.
T Consensus 162 ~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 162 EDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 334678888888877 79999999999999999999999999999999874
No 81
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.7e-10 Score=100.71 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=123.8
Q ss_pred cccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEEe----ecCChhH--HHHHHHHHHHcCC
Q 018919 79 TAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQLY----VYKDRNV--VAQLVRRAERAGF 150 (349)
Q Consensus 79 m~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql~----~~~~~~~--~~~~~~~~~~~G~ 150 (349)
..+..|..++...+||+||.+.|..++ ... +++++++... ...++-|. .+.+.-. +.+.++.+.++|+
T Consensus 24 l~~~pl~~~~iv~~mA~Aa~~gGAvgi-R~~---gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga 99 (229)
T COG3010 24 LPGEPLDSPEIVAAMALAAEQGGAVGI-RIE---GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGA 99 (229)
T ss_pred CCCCCCcchhHHHHHHHHHHhCCcceE-eec---chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCC
Confidence 334445566677799999999999865 333 3455544322 22334343 3222222 4677888899999
Q ss_pred CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEE
Q 018919 151 KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGII 230 (349)
Q Consensus 151 ~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~ 230 (349)
+.|.+ |+. .|+| |. ..+-+.+++. +...-+.+-.+.+.|++..|.++|+|.|-
T Consensus 100 ~IIA~--DaT---~R~R--------P~------------~~~~~~i~~~--k~~~~l~MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 100 DIIAF--DAT---DRPR--------PD------------GDLEELIARI--KYPGQLAMADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred cEEEe--ecc---cCCC--------Cc------------chHHHHHHHh--hcCCcEEEeccCCHHHHHHHHHcCCcEEe
Confidence 98875 543 2222 21 1113445552 23455777789999999999999999997
Q ss_pred EecCCCCC--CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 231 VSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 231 v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+-+|.+. .....+.++.++++.+. +++||+.|.+.||+++.+++.+||++|.||+++-.
T Consensus 153 TTLsGYT~~~~~~~~pDf~lvk~l~~~---~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR 214 (229)
T COG3010 153 TTLSGYTGYTEKPTEPDFQLVKQLSDA---GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR 214 (229)
T ss_pred cccccccCCCCCCCCCcHHHHHHHHhC---CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC
Confidence 65555543 12234678888888773 79999999999999999999999999999998753
No 82
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.32 E-value=2.5e-10 Score=110.28 Aligned_cols=220 Identities=18% Similarity=0.198 Sum_probs=132.2
Q ss_pred ceeEcCeecCcceeecccccccccCCh-----hhHHHHHHHHHcCCeEEecCCCCC--------------C---HH---H
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE-----GEYATARAASAAGTIMTLSSWSTS--------------S---VE---E 116 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~-----~~~~la~aa~~~G~~~~~~~~~~~--------------~---~e---~ 116 (349)
..+|.+.++++-|+.|||... +. ++ ....+-+.-++.|..+++++.... + ++ +
T Consensus 4 P~~i~~~~lkNRiv~apm~~~-~~-~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~ 81 (343)
T cd04734 4 PLQLGHLTLRNRIVSTAHATN-YA-EDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRR 81 (343)
T ss_pred CeeeCCEEecCCeEECCcccc-cc-cCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHH
Confidence 467888999999999999632 22 22 234555556667787777543210 1 11 1
Q ss_pred HHhh---CCCceEEEEeec----------------CC----------h-----------hHHHHHHHHHHHcCCCEEEEe
Q 018919 117 VAST---GPGIRFFQLYVY----------------KD----------R-----------NVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 117 i~~~---~~~~~~~Ql~~~----------------~~----------~-----------~~~~~~~~~~~~~G~~~i~i~ 156 (349)
+.+. .....++||+-. ++ . +...+.+++++++|+|+|+||
T Consensus 82 l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih 161 (343)
T cd04734 82 LAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQ 161 (343)
T ss_pred HHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 2211 124567787420 00 0 112345567778999999999
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCccc---ccCCCCC-Cch-HHHHHHHHHhcCCcEEEEEec----------CH----HH
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLK---NFQGLDL-GKM-DEDVKWLQTITKLPILVKGVL----------TA----ED 217 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~---~~~~~~~-~~~-~~~i~~i~~~~~~pv~vK~v~----------~~----~~ 217 (349)
... |. +-+.|..|. ..-+ -+.++.+ ..+ .+.++.+|+.++.++.+|... +. +.
T Consensus 162 ~ah---Gy----Ll~qFlsp~-~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~ 233 (343)
T cd04734 162 AAH---GH----LIDQFLSPL-TNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEI 233 (343)
T ss_pred ccc---ch----HHHHhhCCC-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHH
Confidence 842 11 112222221 0011 0111112 245 678999999987655555432 23 33
Q ss_pred HHHHHHcC-CCEEEEecCCCCCC----------CCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCE
Q 018919 218 ARIAVQAG-AAGIIVSNHGARQL----------DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASG 284 (349)
Q Consensus 218 a~~a~~~G-~d~I~v~~~gg~~~----------~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~ 284 (349)
++.+.++| +|.|.|+....... .... ..++....+++.+ ++||+++|||++++++.++++.| ||+
T Consensus 234 ~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~ 311 (343)
T cd04734 234 AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADM 311 (343)
T ss_pred HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCe
Confidence 57778898 89999963211110 1111 1356677777777 79999999999999999999965 999
Q ss_pred EEEchHHHH
Q 018919 285 IFIGRPVVY 293 (349)
Q Consensus 285 V~ig~~~l~ 293 (349)
|++||+++.
T Consensus 312 V~~gR~~la 320 (343)
T cd04734 312 VGMTRAHIA 320 (343)
T ss_pred eeecHHhHh
Confidence 999999985
No 83
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.31 E-value=1.6e-10 Score=111.92 Aligned_cols=206 Identities=16% Similarity=0.154 Sum_probs=142.9
Q ss_pred cCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCC--------HHHHHhhCC--CceEEEEeecCChhHHH
Q 018919 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS--------VEEVASTGP--GIRFFQLYVYKDRNVVA 139 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~--------~e~i~~~~~--~~~~~Ql~~~~~~~~~~ 139 (349)
+---.++||.+.. |++++++.|.++|+....|+|..+. --.+.+.++ ..+.+||-. ..++...
T Consensus 263 ~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~~ 335 (614)
T KOG2333|consen 263 FRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTAA 335 (614)
T ss_pred cccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHHH
Confidence 3456889998654 4779999999999998888875321 112333333 678999976 4566555
Q ss_pred HHHHHHHH-cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEecC--
Q 018919 140 QLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVLT-- 214 (349)
Q Consensus 140 ~~~~~~~~-~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~~-- 214 (349)
+.++.+.+ ..+|.|.||++||.. +. |. ++-+.+. +..|.. ...++...... ++||.||+...
T Consensus 336 kaaq~i~e~~~VDFIDlN~GCPID------lv--y~--qG~GsAL---l~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~k 402 (614)
T KOG2333|consen 336 KAAQVIAETCDVDFIDLNMGCPID------LV--YR--QGGGSAL---LNRPARLIRILRAMNAVSGDIPITVKIRTGTK 402 (614)
T ss_pred HHHHHHHhhcceeeeeccCCCChh------ee--ec--cCCcchh---hcCcHHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 55554443 478999999999842 11 11 1111110 123333 55566666656 46999999732
Q ss_pred ------HHHHHHHH-HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC--CCEE
Q 018919 215 ------AEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGI 285 (349)
Q Consensus 215 ------~~~a~~a~-~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G--A~~V 285 (349)
.+...... +.|+++|++++...-|.++-.+.|+.+.++++.++..+|+|++|.|-|.+|-.+.+..+ .+.|
T Consensus 403 eg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~sv 482 (614)
T KOG2333|consen 403 EGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSV 482 (614)
T ss_pred cCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceE
Confidence 23344455 89999999944433356677788999999999886569999999999999999988866 8999
Q ss_pred EEch-----HHHHHH
Q 018919 286 FIGR-----PVVYSL 295 (349)
Q Consensus 286 ~ig~-----~~l~~~ 295 (349)
||+| ||+|..
T Consensus 483 MIaRGALIKPWIFtE 497 (614)
T KOG2333|consen 483 MIARGALIKPWIFTE 497 (614)
T ss_pred EeeccccccchHhhh
Confidence 9999 787754
No 84
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.28 E-value=5.7e-10 Score=102.71 Aligned_cols=167 Identities=22% Similarity=0.249 Sum_probs=118.3
Q ss_pred hHHHHHHHHHcCCeEEecCC-------------CCCCHHHHHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEE
Q 018919 90 EYATARAASAAGTIMTLSSW-------------STSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~-------------~~~~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
+..-|+.|.++|...+.--. ...++++|.+... ....+-++. .+ . ...++.+.++|++.|
T Consensus 17 ~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K-~~--~-~~Ea~~L~eaGvDiI- 91 (283)
T cd04727 17 NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVR-IG--H-FVEAQILEALGVDMI- 91 (283)
T ss_pred CHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeee-hh--H-HHHHHHHHHcCCCEE-
Confidence 45778999999988664311 0124455444322 222333332 11 1 566788899999997
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecC
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~ 234 (349)
|+. .|.| | ..+.++.+|++++.|++. ++.+.++|.++.+.|+|.|-....
T Consensus 92 ---DaT---~r~r----------------------P-~~~~~~~iK~~~~~l~MA-D~stleEal~a~~~Gad~I~TTl~ 141 (283)
T cd04727 92 ---DES---EVLT----------------------P-ADEEHHIDKHKFKVPFVC-GARNLGEALRRISEGAAMIRTKGE 141 (283)
T ss_pred ---ecc---CCCC----------------------c-HHHHHHHHHHHcCCcEEc-cCCCHHHHHHHHHCCCCEEEecCC
Confidence 332 1111 1 135688888888888876 789999999999999999988776
Q ss_pred CCCCC------------------------C------CchhhHHHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHhCC
Q 018919 235 GARQL------------------------D------YVPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 235 gg~~~------------------------~------~~~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~dv~kal~~GA 282 (349)
|++.- . ...+.++.|.++++.+ ++||+ +.|||.+++++.+++.+||
T Consensus 142 gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GA 219 (283)
T cd04727 142 AGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGA 219 (283)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCC
Confidence 66532 0 1134678888888876 69997 9999999999999999999
Q ss_pred CEEEEchHHHH
Q 018919 283 SGIFIGRPVVY 293 (349)
Q Consensus 283 ~~V~ig~~~l~ 293 (349)
++|++|++++.
T Consensus 220 dgVaVGSAI~~ 230 (283)
T cd04727 220 DGVFVGSGIFK 230 (283)
T ss_pred CEEEEcHHhhc
Confidence 99999999974
No 85
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.27 E-value=5.1e-10 Score=107.95 Aligned_cols=146 Identities=23% Similarity=0.262 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc-CcccccCC-C-CCCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF-LTLKNFQG-L-DLGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~-~~~~~~~~-~-~~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
.+.++++.++|+|+++||..+-. +-+.|..|.. ..-....+ + ..+.+ .+.++.+|+.+ +.||.+|..
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gy-------Ll~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~ 229 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGY-------LLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRIS 229 (336)
T ss_pred HHHHHHHHHcCCCEEEEcccccc-------HHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEc
Confidence 34556777899999999987621 1122322310 00000111 1 23445 68899999998 689999965
Q ss_pred c--------CHH----HHHHHHHcCCCEEEEecCCCC--CC-CCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 213 L--------TAE----DARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 213 ~--------~~~----~a~~a~~~G~d~I~v~~~gg~--~~-~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
. +.+ .++.+.+.|+|.|.++..+.. +. ...+ ..++.+.++++.+ ++||+++|||.+++++.+
T Consensus 230 ~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~G~i~t~~~a~~ 307 (336)
T cd02932 230 ATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA--GIPVIAVGLITDPEQAEA 307 (336)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--CCCEEEeCCCCCHHHHHH
Confidence 2 343 356678899999999753322 11 1111 1346667777776 799999999999999999
Q ss_pred HHHhC-CCEEEEchHHHH
Q 018919 277 ALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 277 al~~G-A~~V~ig~~~l~ 293 (349)
+|+.| ||+|++||+++.
T Consensus 308 ~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 308 ILESGRADLVALGRELLR 325 (336)
T ss_pred HHHcCCCCeehhhHHHHh
Confidence 99988 999999999985
No 86
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.20 E-value=2.4e-09 Score=103.89 Aligned_cols=145 Identities=19% Similarity=0.166 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc--CcccccCCCCC-Cch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF--LTLKNFQGLDL-GKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~--~~~~~~~~~~~-~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
.+.+++++++|+|+|+||..+- + +-++|..|.. -+..-+.++.+ ..| .+.|+.+|+.+ +.||.+|..
T Consensus 147 ~~AA~~a~~aGfDgVeih~ahG---y----Ll~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis 219 (361)
T cd04747 147 ARAAADARRLGFDGIELHGAHG---Y----LIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFS 219 (361)
T ss_pred HHHHHHHHHcCCCEEEEecccc---h----HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEC
Confidence 3455677789999999998762 1 2223322210 00000111112 245 68899999998 479999986
Q ss_pred c------------CHHH----HHHHHHcCCCEEEEecCCC-CCCCCchhhHHHHHHHHHHhcCCCcEEEecCC-------
Q 018919 213 L------------TAED----ARIAVQAGAAGIIVSNHGA-RQLDYVPATIMALEEVVKATQGRIPVFLDGGV------- 268 (349)
Q Consensus 213 ~------------~~~~----a~~a~~~G~d~I~v~~~gg-~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI------- 268 (349)
. ++++ ++.+.++|+|.|.++...- .+...+ ..+....++++.+ ++||++.|+|
T Consensus 220 ~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~~~k~~~--~~pv~~~G~i~~~~~~~ 296 (361)
T cd04747 220 QWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAGWTKKLT--GLPTITVGSVGLDGDFI 296 (361)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHHHHHHHc--CCCEEEECCcccccccc
Confidence 2 2233 4556889999998875311 111111 1344555666665 7999999999
Q ss_pred -----------CCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 269 -----------RRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 269 -----------~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
++++++.++|+.| ||+|++||+++.
T Consensus 297 ~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 297 GAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred cccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 6999999999975 999999999985
No 87
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.20 E-value=3e-09 Score=98.07 Aligned_cols=167 Identities=21% Similarity=0.211 Sum_probs=116.7
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------------CCCHHHHHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEE
Q 018919 90 EYATARAASAAGTIMTLSSWS-------------TSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------------~~~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~ 154 (349)
+..-|+.|.++|...+..-.. ..++++|.+... ....+-+.. . +. ...++.++++|+|.|
T Consensus 19 ~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~k-i--gh-~~Ea~~L~~~GvDiI- 93 (287)
T TIGR00343 19 NPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVR-I--GH-FVEAQILEALGVDYI- 93 (287)
T ss_pred CHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEee-c--cH-HHHHHHHHHcCCCEE-
Confidence 457889999999887653211 123444433221 122222221 1 11 456778889999997
Q ss_pred EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecC
Q 018919 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 155 i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~ 234 (349)
|+.. |. .| ..+.+..+|++++.|+++ ++.+.++|.++.+.|+|.|-..+.
T Consensus 94 ---DeTe---~l----------------------rP-ade~~~~~K~~f~vpfma-d~~~l~EAlrai~~GadmI~Tt~e 143 (287)
T TIGR00343 94 ---DESE---VL----------------------TP-ADWTFHIDKKKFKVPFVC-GARDLGEALRRINEGAAMIRTKGE 143 (287)
T ss_pred ---EccC---CC----------------------Cc-HHHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCEEecccc
Confidence 3321 11 11 135678888888999986 689999999999999999988876
Q ss_pred CCCCC---------------------C----------CchhhHHHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHhC
Q 018919 235 GARQL---------------------D----------YVPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALG 281 (349)
Q Consensus 235 gg~~~---------------------~----------~~~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~dv~kal~~G 281 (349)
||+.. . .-.+.++.|.++++.. ++||+ +.|||.|++|+.+++.+|
T Consensus 144 ~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melG 221 (287)
T TIGR00343 144 AGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLG 221 (287)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcC
Confidence 66531 0 0124678888888765 79998 999999999999999999
Q ss_pred CCEEEEchHHHH
Q 018919 282 ASGIFIGRPVVY 293 (349)
Q Consensus 282 A~~V~ig~~~l~ 293 (349)
|++|.+|++++.
T Consensus 222 AdGVaVGSaI~k 233 (287)
T TIGR00343 222 ADGVFVGSGIFK 233 (287)
T ss_pred CCEEEEhHHhhc
Confidence 999999999874
No 88
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.16 E-value=4e-09 Score=97.80 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=101.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI- 202 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~- 202 (349)
.|.+.+.+.++.+.+.|+|.|++.+...-+ |.-. +-++++ .+.+. ++.++++|+.
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G---------------~~~~~~~~~v~~ir~~~ 85 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAG---------------MTPEKCFELLKKVRQKH 85 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHhcC
Confidence 466778899999999999999987743111 1000 111111 12223 7889999977
Q ss_pred cCCcEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------CC-------------
Q 018919 203 TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ------------- 238 (349)
Q Consensus 203 ~~~pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~~------------- 238 (349)
.++|++.-+..++ +.++.+.++|+|+|++.- +|- +.
T Consensus 86 ~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~g 165 (256)
T TIGR00262 86 PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQG 165 (256)
T ss_pred CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCC
Confidence 6899876666665 458889999999998851 110 00
Q ss_pred ------C--CCc------hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 239 ------L--DYV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 239 ------~--~~~------~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
. .+| +...+.+.++++.. +.||+++|||++++++.++...|||+|.+||+++..+.
T Consensus 166 fiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~ 235 (256)
T TIGR00262 166 FVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIE 235 (256)
T ss_pred CEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 0 012 22345666666654 67999999999999999999999999999999987553
No 89
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.13 E-value=1.3e-09 Score=105.16 Aligned_cols=144 Identities=19% Similarity=0.107 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC--cCcccccCCCCC-Cch-HHHHHHHHHhcCC-cEEEEEec
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLDL-GKM-DEDVKWLQTITKL-PILVKGVL 213 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~~-~~~-~~~i~~i~~~~~~-pv~vK~v~ 213 (349)
.+.+++++++|+|+|+||..+- + +-+.|..|. +-+..-+.++.+ ..| .+.++.+|+.++. ||.+|...
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahG---y----Ll~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~ 227 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANG---Y----LIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSP 227 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccc---h----hHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECc
Confidence 3556677789999999998762 1 222333331 001111111112 245 6889999998855 89999852
Q ss_pred -----------CH----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 018919 214 -----------TA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 278 (349)
Q Consensus 214 -----------~~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal 278 (349)
+. +.++.+.+.|+|.|.|+. |..........++...++++.+ ++||+++|||+ ++++.+++
T Consensus 228 ~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~-g~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~-~~~a~~~l 303 (338)
T cd02933 228 FGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVE-PRVAGNPEDQPPDFLDFLRKAF--KGPLIAAGGYD-AESAEAAL 303 (338)
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCCCCcccccchHHHHHHHHHc--CCCEEEECCCC-HHHHHHHH
Confidence 33 346778889999999964 2221112334567777888887 79999999997 99999999
Q ss_pred HhC-CCEEEEchHHHH
Q 018919 279 ALG-ASGIFIGRPVVY 293 (349)
Q Consensus 279 ~~G-A~~V~ig~~~l~ 293 (349)
+.| ||+|++||+++.
T Consensus 304 ~~g~~D~V~~gR~~la 319 (338)
T cd02933 304 ADGKADLVAFGRPFIA 319 (338)
T ss_pred HcCCCCEEEeCHhhhh
Confidence 976 999999999984
No 90
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.13 E-value=1e-08 Score=95.26 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=98.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc-----ccCCCCCCch-HHHHHHHHHhcCCc
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK-----NFQGLDLGKM-DEDVKWLQTITKLP 206 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~-----~~~~~~~~~~-~~~i~~i~~~~~~p 206 (349)
.|.+.+.+.++.+.+.|+|.|+|.+....+ +-+|.... .+..-.+.+. ++.++++|+..++|
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP------------~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIELGIPYSDP------------LADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCC------------CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 466788899999999999999987743211 00111110 0000112233 78899999878899
Q ss_pred EEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------CC-----------------
Q 018919 207 ILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ----------------- 238 (349)
Q Consensus 207 v~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~~----------------- 238 (349)
+++-+..|+ ...+.|.++|+|++++.- +|- +.
T Consensus 94 ~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~ 173 (263)
T CHL00200 94 IVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYL 173 (263)
T ss_pred EEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 876665443 357889999999999851 110 00
Q ss_pred ----CCCch-----h-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 239 ----LDYVP-----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 239 ----~~~~~-----~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.-+|. . ..+.+.++++.. +.||.+.+||++++++.++...|||+|.+|++++..+.
T Consensus 174 vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~ 239 (263)
T CHL00200 174 VSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred EcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 00121 1 123344444433 79999999999999999999999999999999986554
No 91
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.13 E-value=1.9e-09 Score=97.63 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecC-CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVD-TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV- 212 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d-~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v- 212 (349)
.....++++..++.|+++|-+..+ ... ....+.++.+++..++||++|+.
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~----------------------------~g~~~~~~~i~~~v~iPi~~~~~i 81 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYF----------------------------QGSLEDLRAVREAVSLPVLRKDFI 81 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCcccc----------------------------CCCHHHHHHHHHhcCCCEEECCee
Confidence 344677889999999999865322 110 00146677777777889888874
Q ss_pred cCHHHHHHHHHcCCCEEEEecCCCC--------------CC------------------------------CCchhhHHH
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHGAR--------------QL------------------------------DYVPATIMA 248 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~gg~--------------~~------------------------------~~~~~~~~~ 248 (349)
.+.++++.+.++|+|+|.+....-. .+ ....+.++.
T Consensus 82 ~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~ 161 (217)
T cd00331 82 IDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNT 161 (217)
T ss_pred cCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHH
Confidence 5566888888899998886421100 00 001223455
Q ss_pred HHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 249 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 249 l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.++++.++.++||++.|||++++|+.+++.+||++|.+|++++.
T Consensus 162 ~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 162 TERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 666666543468999999999999999999999999999999875
No 92
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.12 E-value=6.5e-09 Score=100.95 Aligned_cols=223 Identities=17% Similarity=0.106 Sum_probs=132.1
Q ss_pred ceeEcCeecCcceeeccccccc--ccCC-hhhHHHHHHHHHcCCeEEecCCCCC--------------C---HH---HHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQK--MAHP-EGEYATARAASAAGTIMTLSSWSTS--------------S---VE---EVA 118 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~--l~~~-~~~~~la~aa~~~G~~~~~~~~~~~--------------~---~e---~i~ 118 (349)
..+|.++++++-|+.|||.... ...+ +....+-+.-++.|+.+++++.... + ++ ++.
T Consensus 4 P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~ 83 (353)
T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLIT 83 (353)
T ss_pred CeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHH
Confidence 4678899999999999996211 1112 2334555666667888776543100 1 11 121
Q ss_pred hh---CCCceEEEEeec------------C--------------Ch-------hHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 119 ST---GPGIRFFQLYVY------------K--------------DR-------NVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 119 ~~---~~~~~~~Ql~~~------------~--------------~~-------~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
+. .....++||.-. . +. +...+.+++++++|+|+|+|+...
T Consensus 84 ~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ah--- 160 (353)
T cd02930 84 DAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSE--- 160 (353)
T ss_pred HHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc---
Confidence 11 124567887221 0 00 113355667778999999997632
Q ss_pred CchhHHhhhhcCCCCc--CcccccCCCC-CCch-HHHHHHHHHhcCC--cEEEEEe--------cCHH----HHHHHHHc
Q 018919 163 GRREADIKNRFTLPPF--LTLKNFQGLD-LGKM-DEDVKWLQTITKL--PILVKGV--------LTAE----DARIAVQA 224 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~--~~~~~~~~~~-~~~~-~~~i~~i~~~~~~--pv~vK~v--------~~~~----~a~~a~~~ 224 (349)
|+ +-+.|..|.. -+..-+.++. ...+ .+.++.+|+.++. +|.+|.. .+.+ .++.+.++
T Consensus 161 Gy----Ll~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~ 236 (353)
T cd02930 161 GY----LINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAA 236 (353)
T ss_pred ch----HHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHc
Confidence 11 2223332310 0000011111 1345 6789999999854 5665553 1333 35778889
Q ss_pred CCCEEEEec--CCCCCC----CCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 225 GAAGIIVSN--HGARQL----DYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 225 G~d~I~v~~--~gg~~~----~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
|+|.|.|+. +..+.. ..... ......++++.+ ++||+++|+|++++++.++++.| +|+|++||+++.
T Consensus 237 G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 237 GADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred CCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 999999974 222111 11111 234456777776 79999999999999999999976 999999999985
No 93
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.09 E-value=1.5e-08 Score=107.89 Aligned_cols=144 Identities=24% Similarity=0.191 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC--cCcccccCCCC-CCch-HHHHHHHHHhc--CCcEEEEEec
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLD-LGKM-DEDVKWLQTIT--KLPILVKGVL 213 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~-~~~~-~~~i~~i~~~~--~~pv~vK~v~ 213 (349)
+.+++++++|+|+|+||... |+ +-+.|..|. .-+..-+.++. ...+ .+.++.+|+.+ +.||.+|+..
T Consensus 555 ~aA~~a~~aGfDgveih~ah---Gy----Ll~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~ 627 (765)
T PRK08255 555 AAARRAAEAGFDWLELHCAH---GY----LLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISA 627 (765)
T ss_pred HHHHHHHHcCCCEEEEeccc---ch----HHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcc
Confidence 45567778999999999872 10 111222221 00000011111 1245 68899999987 4799999863
Q ss_pred --------CH----HHHHHHHHcCCCEEEEecCCCCCC----CCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 214 --------TA----EDARIAVQAGAAGIIVSNHGARQL----DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 214 --------~~----~~a~~a~~~G~d~I~v~~~gg~~~----~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
+. +.++.+.++|+|.|.|+.. ++.. ..++ .......++++.+ ++||++.|+|++++++.+
T Consensus 628 ~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pv~~~G~i~~~~~a~~ 704 (765)
T PRK08255 628 HDWVEGGNTPDDAVEIARAFKAAGADLIDVSSG-QVSKDEKPVYGRMYQTPFADRIRNEA--GIATIAVGAISEADHVNS 704 (765)
T ss_pred ccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCC-CCCcCCCCCcCccccHHHHHHHHHHc--CCEEEEeCCCCCHHHHHH
Confidence 23 3467788999999999632 2110 0111 1233445666666 799999999999999999
Q ss_pred HHHhC-CCEEEEchHHHH
Q 018919 277 ALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 277 al~~G-A~~V~ig~~~l~ 293 (349)
+|+.| ||+|++||+++.
T Consensus 705 ~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 705 IIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHcCCcceeeEcHHHHh
Confidence 99965 999999999985
No 94
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.08 E-value=1e-09 Score=106.49 Aligned_cols=148 Identities=20% Similarity=0.180 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc--CcccccCCCC-CCch-HHHHHHHHHhcC----C--cEE
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF--LTLKNFQGLD-LGKM-DEDVKWLQTITK----L--PIL 208 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~--~~~~~~~~~~-~~~~-~~~i~~i~~~~~----~--pv~ 208 (349)
.+.+++++++|+|+|+||..+ |+ +-+.|..|.. -+..-+.++. ...+ .+.++.+|+.++ . ||.
T Consensus 147 ~~aA~~a~~aGfDgVeih~ah---Gy----Ll~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~ 219 (353)
T cd04735 147 GEATRRAIEAGFDGVEIHGAN---GY----LIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILG 219 (353)
T ss_pred HHHHHHHHHcCCCEEEEcccc---ch----HHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEE
Confidence 355667778999999999753 11 1122322210 0000011111 2245 688999999875 3 455
Q ss_pred EEEec--------CH----HHHHHHHHcCCCEEEEecCCCCC--CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 018919 209 VKGVL--------TA----EDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 274 (349)
Q Consensus 209 vK~v~--------~~----~~a~~a~~~G~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 274 (349)
+|... +. +.++.+.++|+|.|.|+..+.+. ..........+..+++.++.++|||+.|||++++++
T Consensus 220 ~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~a 299 (353)
T cd04735 220 YRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDA 299 (353)
T ss_pred EEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHH
Confidence 55431 22 33577889999999997543221 111112344455566655447999999999999999
Q ss_pred HHHHHhCCCEEEEchHHHH
Q 018919 275 FKALALGASGIFIGRPVVY 293 (349)
Q Consensus 275 ~kal~~GA~~V~ig~~~l~ 293 (349)
.++++.|||+|++||+++.
T Consensus 300 e~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 300 LEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHcCCChHHHhHHHHh
Confidence 9999999999999999985
No 95
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.05 E-value=2.9e-08 Score=97.00 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=90.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC--cCcccccCCCC-CCch-HHHHHHHHHhcCC--cEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLD-LGKM-DEDVKWLQTITKL--PILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~-~~~~-~~~i~~i~~~~~~--pv~vK~v 212 (349)
.+.+++++++|+|+|+||..+-. +-++|..|. +-+..-+.++. ...| .+.++.+|+.++. ||.+|+.
T Consensus 153 ~~AA~ra~~aGfDgVEih~ahGy-------Ll~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls 225 (370)
T cd02929 153 VDAALRARDAGFDIVYVYAAHGY-------LPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFS 225 (370)
T ss_pred HHHHHHHHHcCCCEEEEcccccc-------hHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEec
Confidence 34556777899999999987621 122232221 00111111121 2345 7889999999854 5555543
Q ss_pred c----------CHHH----HHHHHHcCCCEEEEecCCC----CCCCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 213 L----------TAED----ARIAVQAGAAGIIVSNHGA----RQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 213 ~----------~~~~----a~~a~~~G~d~I~v~~~gg----~~~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
. +.++ ++.+.+ .+|.+.++...- ..... ....++...++++.+ ++||++.|||++++
T Consensus 226 ~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~ 302 (370)
T cd02929 226 VDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT--SKPVVGVGRFTSPD 302 (370)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccccHHHHHHHHHHC--CCCEEEeCCCCCHH
Confidence 1 2333 234444 489998864210 00000 111245566777766 79999999999999
Q ss_pred HHHHHHHhC-CCEEEEchHHHH
Q 018919 273 DVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~G-A~~V~ig~~~l~ 293 (349)
++.++|+.| ||+|++||+++.
T Consensus 303 ~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 303 KMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHcCCCCeeeechHhhh
Confidence 999999976 999999999984
No 96
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.04 E-value=7.3e-09 Score=101.59 Aligned_cols=146 Identities=20% Similarity=0.226 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC--cCcccccCCCC-CCch-HHHHHHHHHhc--CCcEEEEEec
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP--FLTLKNFQGLD-LGKM-DEDVKWLQTIT--KLPILVKGVL 213 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~--~~~~~~~~~~~-~~~~-~~~i~~i~~~~--~~pv~vK~v~ 213 (349)
+.+++++++|+|+|+||.... |. +-+.|..|. +-+..-+.++. ...| .+.|+.+|+.+ +.||.+|...
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~--Gy----Ll~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHE--GY----LLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHHHHHHcCCCEEEEecccc--Ch----HHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 455677789999999987320 11 123333231 00111111111 2345 78899999998 5689999763
Q ss_pred ----------------------CHH----HHHHHHHcCCCEEEEecCCCCCCC-C------chh-hHHHHHHHHHHhcCC
Q 018919 214 ----------------------TAE----DARIAVQAGAAGIIVSNHGARQLD-Y------VPA-TIMALEEVVKATQGR 259 (349)
Q Consensus 214 ----------------------~~~----~a~~a~~~G~d~I~v~~~gg~~~~-~------~~~-~~~~l~~i~~~~~~~ 259 (349)
+.+ .++.+.++|+|.|.|+.....+.. . .+. .+.....+++.+ +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ 305 (382)
T cd02931 228 KSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV--D 305 (382)
T ss_pred hhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC--C
Confidence 223 357778899999999642211111 1 111 134566677776 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 260 IPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 260 ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+||+++|||++++++.++|+.| ||+|++||+++.
T Consensus 306 ~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 306 VPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 9999999999999999999976 999999999985
No 97
>PLN02591 tryptophan synthase
Probab=99.04 E-value=3.8e-08 Score=90.72 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=99.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-----cCCCCCCch-HHHHHHHHHhcCCc
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-----FQGLDLGKM-DEDVKWLQTITKLP 206 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-----~~~~~~~~~-~~~i~~i~~~~~~p 206 (349)
.|.+.+.+.++.+.+.|+|.|+|.+....+- -+|..+.. ...-.+.+. ++.++++|+..++|
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~------------aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p 80 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPL------------ADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCP 80 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCc------------ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 4677788999999999999999876432110 01111000 000012223 78899999778899
Q ss_pred EEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC-------------C--------------
Q 018919 207 ILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA-------------R-------------- 237 (349)
Q Consensus 207 v~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg-------------~-------------- 237 (349)
+++-...|+ +..+.|.++|+|++++-. ||- |
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~ 160 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYL 160 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 877665443 347889999999998841 110 0
Q ss_pred ----CCCC---c-hhh-HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 238 ----QLDY---V-PAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 238 ----~~~~---~-~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
...+ + +.. .+.+.++++.. ++||+...||++++|+.+++..|||+|.+||+++....
T Consensus 161 Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~ 226 (250)
T PLN02591 161 VSSTGVTGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALG 226 (250)
T ss_pred eeCCCCcCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhh
Confidence 0001 1 222 23456665543 89999999999999999999999999999999987543
No 98
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.03 E-value=4.9e-09 Score=101.25 Aligned_cols=146 Identities=23% Similarity=0.288 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCc--CcccccCCCC-CCch-HHHHHHHHHhc--CCcEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF--LTLKNFQGLD-LGKM-DEDVKWLQTIT--KLPILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~--~~~~~~~~~~-~~~~-~~~i~~i~~~~--~~pv~vK~v 212 (349)
.+.+++++++|+|+|+||..+- .+-+.|..|.- -+..-+.++. ...| .+.|+.+|+.+ +.||.+|..
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~g-------yLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris 224 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHG-------YLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLN 224 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhh-------hHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEc
Confidence 4566777889999999998751 12223322310 0001011111 2345 68899999998 479999985
Q ss_pred --------cCHHH----HHHHHHcCCCEEEEecCCCCCCCCc---------h--hhHHHHHHHHHHhcCCCcEEEecCCC
Q 018919 213 --------LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---------P--ATIMALEEVVKATQGRIPVFLDGGVR 269 (349)
Q Consensus 213 --------~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~---------~--~~~~~l~~i~~~~~~~ipvia~GGI~ 269 (349)
.+.++ ++.+.++|+|.|.|+.....+.... + ..++...++++.+ ++||+++|+|.
T Consensus 225 ~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~ 302 (338)
T cd04733 225 SADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGGFR 302 (338)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCCCC
Confidence 24433 5778889999999964221111100 0 1245566777777 79999999999
Q ss_pred CHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 270 RGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 270 ~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+.+++.++++.| ||.|++||+++.
T Consensus 303 t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 303 TRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred CHHHHHHHHHcCCCCeeeeChHhhh
Confidence 999999999986 999999999984
No 99
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.03 E-value=1.4e-08 Score=94.51 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTA 215 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~ 215 (349)
...++++..++.|++++-+..+.... ..-.++++.+++.+++||+.|.. .++
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f---------------------------~g~~~~l~~v~~~v~iPvl~kdfi~~~ 123 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFF---------------------------QGSLEYLRAARAAVSLPVLRKDFIIDP 123 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccC---------------------------CCCHHHHHHHHHhcCCCEEeeeecCCH
Confidence 34577888899999998765443110 00157888888888999999985 566
Q ss_pred HHHHHHHHcCCCEEEEecCCCC--------------------------------------------CCCCchhhHHHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGAR--------------------------------------------QLDYVPATIMALEE 251 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~--------------------------------------------~~~~~~~~~~~l~~ 251 (349)
.++..+.++|||+|.+...--+ .+..-.+.++...+
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~ 203 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTER 203 (260)
T ss_pred HHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHH
Confidence 7888899999999988632100 00011223555666
Q ss_pred HHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 252 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 252 i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.+.+++..++|+.|||.+++|+.+++.+|||+|.||++++.
T Consensus 204 l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 204 LAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred HHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 666654457999999999999999999999999999999985
No 100
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.01 E-value=2.8e-08 Score=89.59 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=111.5
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCC-CCcCccc-----c----------cCC-CC
Q 018919 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLK-----N----------FQG-LD 188 (349)
Q Consensus 126 ~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~-p~~~~~~-----~----------~~~-~~ 188 (349)
.+-+....+.+.....++.+.+.|+..++||+++|..-.-.+.++..|.. | ++..- + +.. ..
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p-~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDP-EVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCC-CeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 34445556788888899999999999999999988654445666655531 1 11100 0 000 45
Q ss_pred CCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC
Q 018919 189 LGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 267 (349)
.|.+ -+.++..+ ..++|++- ++.|+.++..+.++|+|.|.++..+ ..| ...+..++..++ ++|+++.||
T Consensus 94 sP~~~~~v~~~~~-~~~i~~iP-G~~T~~E~~~A~~~Gad~vklFPa~----~~G---~~~ik~l~~~~p-~ip~~atGG 163 (213)
T PRK06552 94 SPSFNRETAKICN-LYQIPYLP-GCMTVTEIVTALEAGSEIVKLFPGS----TLG---PSFIKAIKGPLP-QVNVMVTGG 163 (213)
T ss_pred CCCCCHHHHHHHH-HcCCCEEC-CcCCHHHHHHHHHcCCCEEEECCcc----cCC---HHHHHHHhhhCC-CCEEEEECC
Confidence 6766 45566555 56999875 7899999999999999999995311 122 345666655553 699999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 268 VRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|. .+++.+++++||++|.+|+.++.
T Consensus 164 I~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 164 VN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred CC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 98 59999999999999999999964
No 101
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.00 E-value=6e-08 Score=94.03 Aligned_cols=145 Identities=28% Similarity=0.337 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc---cCCCCCC-ch-HHHHHHHHHhcCC--cEEEEE
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN---FQGLDLG-KM-DEDVKWLQTITKL--PILVKG 211 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~---~~~~~~~-~~-~~~i~~i~~~~~~--pv~vK~ 211 (349)
.+.+++++++|+|+++||--. | .+-++|-.|- ..-+. +.++.++ .| .+.++.+|+.++. ||.+++
T Consensus 152 ~~AA~rA~~AGFDgVEIH~Ah---G----YLi~qFlsp~-tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rl 223 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAH---G----YLLSQFLSPL-TNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRL 223 (363)
T ss_pred HHHHHHHHHcCCCEEEEeecc---c----hHHHHhcCCc-cCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 456678888999999998643 2 2334443331 01110 1112222 34 6889999999954 788887
Q ss_pred ec---------CH----HHHHHHHHcC-CCEEEEecCCCC---CCCCc-h-hhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 212 VL---------TA----EDARIAVQAG-AAGIIVSNHGAR---QLDYV-P-ATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 212 v~---------~~----~~a~~a~~~G-~d~I~v~~~gg~---~~~~~-~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
.. +. +.++.+.+.| +|.|.++..+.. ..... + ........++... ++|+|++|+|++++
T Consensus 224 s~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~--~~pvi~~G~i~~~~ 301 (363)
T COG1902 224 SPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV--RIPVIAVGGINDPE 301 (363)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc--CCCEEEeCCCCCHH
Confidence 53 22 3477888999 799999853221 11111 1 1123334455554 69999999999999
Q ss_pred HHHHHHHhC-CCEEEEchHHHH
Q 018919 273 DVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~G-A~~V~ig~~~l~ 293 (349)
.+.++|+.| ||.|.+||+|+.
T Consensus 302 ~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 302 QAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHHHcCCCCEEEechhhhc
Confidence 999999998 999999999985
No 102
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.00 E-value=6.1e-08 Score=89.90 Aligned_cols=147 Identities=19% Similarity=0.209 Sum_probs=97.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cchh-----HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH-Hh
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GRRE-----ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ-TI 202 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~r~-----~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~-~~ 202 (349)
.|.+.+.+.++.+.+.|++.|+|.+....+ |.-. +-++++ .+.+. ++.++++| +.
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G---------------~~~~~~~~~~~~~r~~~ 87 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAG---------------VTLADVFELVREIREKD 87 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHhcC
Confidence 466788899999999999999987643211 1000 111111 12222 67888888 44
Q ss_pred cCCcEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------C-------------C
Q 018919 203 TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------R-------------Q 238 (349)
Q Consensus 203 ~~~pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~-------------~ 238 (349)
.++|+++-...++ +..+.|.++|+|++.+-. +|- + .
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~g 167 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASG 167 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC
Confidence 6889876665443 447889999999998841 110 0 0
Q ss_pred ------C--CCc-----hh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 239 ------L--DYV-----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 239 ------~--~~~-----~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
. .+| +. ..+.+.++++.. ++||++.+||++++|+.+++.. ||+|.+|++++..+..
T Consensus 168 fIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~ 237 (258)
T PRK13111 168 FVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIEE 237 (258)
T ss_pred cEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHh
Confidence 0 011 11 234666776654 7999999999999999998875 9999999999876543
No 103
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.97 E-value=1.5e-08 Score=93.68 Aligned_cols=122 Identities=23% Similarity=0.282 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDA 218 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a 218 (349)
...++.++++|+|.|. +.. |. .| ..+.+..+|+.++.|+++ ++.+.++|
T Consensus 86 ~~Ea~~L~~~GvDiID----~Te---~l----------------------rp-ad~~~~~~K~~f~~~fma-d~~~l~EA 134 (293)
T PRK04180 86 FVEAQILEALGVDYID----ESE---VL----------------------TP-ADEEYHIDKWDFTVPFVC-GARNLGEA 134 (293)
T ss_pred HHHHHHHHHcCCCEEe----ccC---CC----------------------Cc-hHHHHHHHHHHcCCCEEc-cCCCHHHH
Confidence 4567788899999873 321 11 11 135688888888999986 68999999
Q ss_pred HHHHHcCCCEEEEecCCCCC------------------CC------------CchhhHHHHHHHHHHhcCCCcEE--Eec
Q 018919 219 RIAVQAGAAGIIVSNHGARQ------------------LD------------YVPATIMALEEVVKATQGRIPVF--LDG 266 (349)
Q Consensus 219 ~~a~~~G~d~I~v~~~gg~~------------------~~------------~~~~~~~~l~~i~~~~~~~ipvi--a~G 266 (349)
.++.+.|+|.|-..+..|+. +. .-.+.++.|.++++.. ++||+ +.|
T Consensus 135 lrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~--~iPVV~~AeG 212 (293)
T PRK04180 135 LRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG--RLPVVNFAAG 212 (293)
T ss_pred HHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC--CCCEEEEEeC
Confidence 99999999999887433321 00 0234678888888866 79998 999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 267 GVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 267 GI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
||.+++|+.+++.+||++|++|++++.
T Consensus 213 GI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 213 GIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 999999999999999999999999874
No 104
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.96 E-value=2e-07 Score=85.72 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=101.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc-----ccCCCCCCch-HHHHHHHHHh-cCC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK-----NFQGLDLGKM-DEDVKWLQTI-TKL 205 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~-----~~~~~~~~~~-~~~i~~i~~~-~~~ 205 (349)
.+.+.+.+.++.+.+.|+|+|++.+....+- -+|.++. .+.+-.+... ++.++.+|+. .++
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPv------------ADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~ 95 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPV------------ADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKV 95 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcC------------ccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCC
Confidence 4677889999999999999999877432110 0111110 0000123334 7889999966 689
Q ss_pred cEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCC---------C------------C----
Q 018919 206 PILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------R------------Q---- 238 (349)
Q Consensus 206 pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg---------~------------~---- 238 (349)
|+++-+..++ +..+.|.++|+|++.+-- ||= + +
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY 175 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIY 175 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 9998776554 347889999999999841 111 0 0
Q ss_pred ---C--CCc---h---hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 239 ---L--DYV---P---ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 239 ---~--~~~---~---~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
. -+| + ...+.+..+++.. ++||+..-||++++++.+..+. ||+|.+||+++..+..
T Consensus 176 ~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 176 YVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIEE 242 (265)
T ss_pred EEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHHHHHh
Confidence 0 011 1 1234455555544 8999999999999999999999 9999999999986654
No 105
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.95 E-value=9.5e-08 Score=85.80 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=104.4
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcc-----c--------cc-CCCCCCchHHH
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL-----K--------NF-QGLDLGKMDED 195 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~-----~--------~~-~~~~~~~~~~~ 195 (349)
....+.+...+.++.+.+.|++.++++.+.|..-...+.++..+..+-.++. . .. .....|.+-..
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~ 95 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPE 95 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 3345677777888888888888888888777533334555555532100000 0 00 01234444233
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
+.+.+...+.+++. ++.|++++..+.++|+|.|.+... .....+.+.++++.++.++|+++.||| +.+++.
T Consensus 96 v~~~~~~~~~~~~~-G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~ 166 (206)
T PRK09140 96 VIRRAVALGMVVMP-GVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAVGGV-TPENLA 166 (206)
T ss_pred HHHHHHHCCCcEEc-ccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHH
Confidence 44444456888876 489999999999999999998432 112255666666665336999999999 789999
Q ss_pred HHHHhCCCEEEEchHHHH
Q 018919 276 KALALGASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~ 293 (349)
+.+++||++|.+++.++.
T Consensus 167 ~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 167 PYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHCCCeEEEEehHhcc
Confidence 999999999999999874
No 106
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=98.93 E-value=3.9e-07 Score=88.73 Aligned_cols=142 Identities=17% Similarity=0.134 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhcCC-cEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTITKL-PILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~~~-pv~vK~v 212 (349)
.+.+++++++|+|+|+||... |+ +-+.|..|. ..-+. ..| +-++ .| .+.|+.+|+.++- +|.+|..
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ah---Gy----Ll~qFLSp~-~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis 233 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAH---GY----LLHQFLSPS-SNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRIS 233 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccc---cc----hHHHhcCCc-CCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 345677788999999998653 21 223343331 11111 111 1122 34 6889999998842 4777763
Q ss_pred -----------cCHHH-----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 213 -----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 213 -----------~~~~~-----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
.+.++ ++.+.+.|+|.|.|+..... ...+-......++++.+ ++||++.|++ +++.+.+
T Consensus 234 ~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~--~~~~~~~~~~~~ik~~~--~~pv~~~G~~-~~~~ae~ 308 (362)
T PRK10605 234 PLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWA--GGEPYSDAFREKVRARF--HGVIIGAGAY-TAEKAET 308 (362)
T ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccccc--CCccccHHHHHHHHHHC--CCCEEEeCCC-CHHHHHH
Confidence 23333 56777889999999852110 01111223345566666 6899999996 8999999
Q ss_pred HHHhC-CCEEEEchHHHH
Q 018919 277 ALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 277 al~~G-A~~V~ig~~~l~ 293 (349)
+|+.| ||+|.+||+++.
T Consensus 309 ~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 309 LIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHcCCCCEEEECHHhhh
Confidence 99988 999999999985
No 107
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.93 E-value=2.9e-07 Score=83.46 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=114.9
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC---C--CCCHHHHHhhCCCceEEEEeec----CC
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---S--TSSVEEVASTGPGIRFFQLYVY----KD 134 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---~--~~~~e~i~~~~~~~~~~Ql~~~----~~ 134 (349)
++.|++|++.+++..=-+ .++ ..+.++....|+-.+.-.. . ....+.+.+..+. .-+.+.++ .+
T Consensus 2 ~i~~~~~~SRl~~Gtgky---~s~---~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~-~~~~~lpNTaG~~t 74 (248)
T cd04728 2 TIGGKTFSSRLLLGTGKY---PSP---AIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDK-SGYTLLPNTAGCRT 74 (248)
T ss_pred eECCEEeecceEEecCCC---CCH---HHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhccc-cCCEECCCCCCCCC
Confidence 578999999999876222 122 3567777778877543111 1 1112223222220 01222222 33
Q ss_pred hhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEE
Q 018919 135 RNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~ 211 (349)
.+.-...++.+++. |-++|-+-+=.. +. ..-|+..+.++..+... +.-++-=.
T Consensus 75 a~eAv~~a~lare~~~~~~iKlEVi~d---------------~~---------~Llpd~~~tv~aa~~L~~~Gf~vlpyc 130 (248)
T cd04728 75 AEEAVRTARLAREALGTDWIKLEVIGD---------------DK---------TLLPDPIETLKAAEILVKEGFTVLPYC 130 (248)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEecC---------------cc---------ccccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34444455555565 667764443110 00 01122234455544432 43333223
Q ss_pred ecCHHHHHHHHHcCCCEEEE--ecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 212 VLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v--~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
..++..++++.++|++.|-. +--|. ..|..+.+.+..+++.. ++|||++|||.+++|+.+++++|||+|++|+
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIGs---g~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIGS---GQGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 47899999999999999954 11121 12455577777777764 7999999999999999999999999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
++..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 9874
No 108
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.90 E-value=1.5e-07 Score=86.78 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=97.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCC--CcCccccc-----CCCCCCch-HHHHHHHHHhcC
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP--PFLTLKNF-----QGLDLGKM-DEDVKWLQTITK 204 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p--~~~~~~~~-----~~~~~~~~-~~~i~~i~~~~~ 204 (349)
.+.+.+.+.++.++++|++.+++++ |.+ .| ++....+. ..-.+.+. .+.++++|+..+
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--Pfs------------dPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~ 76 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFS------------DPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNT 76 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCC------------CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCC
Confidence 3557788999999999999999876 321 11 00000000 00012234 678999998888
Q ss_pred CcEEEEEecC-------HHHHHHHHHcCCCEEEEec---------------CCC---------C-----------CC---
Q 018919 205 LPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------R-----------QL--- 239 (349)
Q Consensus 205 ~pv~vK~v~~-------~~~a~~a~~~G~d~I~v~~---------------~gg---------~-----------~~--- 239 (349)
+|+++-...+ .+.++.+.++|+|++++.- +|- + ..
T Consensus 77 ~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~v 156 (242)
T cd04724 77 IPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFI 156 (242)
T ss_pred CCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCE
Confidence 9977644434 3457889999999999820 111 0 00
Q ss_pred --------CCc-----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 240 --------DYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 240 --------~~~-----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.++ +...+.+.++++.. ++||+++|||++.+++.++... ||+|.+|++++.-+.
T Consensus 157 y~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~ 223 (242)
T cd04724 157 YYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIE 223 (242)
T ss_pred EEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHH
Confidence 011 12345566666543 7999999999999999999999 999999999987554
No 109
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.89 E-value=2.5e-07 Score=84.03 Aligned_cols=195 Identities=17% Similarity=0.204 Sum_probs=115.6
Q ss_pred eeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC---C-CCCHHHHHhhCCCceEEEEee----cCC
Q 018919 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---S-TSSVEEVASTGPGIRFFQLYV----YKD 134 (349)
Q Consensus 63 ~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---~-~~~~e~i~~~~~~~~~~Ql~~----~~~ 134 (349)
..|.|++|++.+++..=-+ .+ ...+.++....|+-.+.-.. . ...-+.+.+..+. .-+.+.+ ..+
T Consensus 2 l~i~~~~~~SRl~~Gtgky---~s---~~~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~-~~~~~lpNTaG~~t 74 (250)
T PRK00208 2 LTIAGKTFSSRLLLGTGKY---PS---PQVMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPP-LGVTLLPNTAGCRT 74 (250)
T ss_pred cEECCEEeeccceEecCCC---CC---HHHHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhccc-cCCEECCCCCCCCC
Confidence 4678999999999876222 12 23577777888877553111 1 1111233332220 0112222 234
Q ss_pred hhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEE
Q 018919 135 RNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~ 211 (349)
.+.-...++.+++. |-++|-+-+=.- ..+. -++..+.++..+... +.-++-=.
T Consensus 75 a~eAv~~a~lare~~~~~~iKlEVi~d----------~~~l--------------lpd~~~tv~aa~~L~~~Gf~vlpyc 130 (250)
T PRK00208 75 AEEAVRTARLAREALGTNWIKLEVIGD----------DKTL--------------LPDPIETLKAAEILVKEGFVVLPYC 130 (250)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEecC----------CCCC--------------CcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 44444555556665 667764433110 0011 122234455555443 33333123
Q ss_pred ecCHHHHHHHHHcCCCEEEE--ecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 212 VLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v--~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
..++..++++.++|++.|-. +--|. . .|..+.+.+..+++.. ++|||++|||.+++|+.+++++|||+|++++
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIGs-g--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIGS-G--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCC-C--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 47899999999999999954 11121 1 2444566677777764 7999999999999999999999999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
++..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 9874
No 110
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.88 E-value=2.6e-08 Score=91.68 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|+|.|.+++...... .....++.+.++.+.+ ++||+++|||++.+|+.+++.. |||+|++||+++.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~-~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGT-KKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCC-CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 4667889999999999965321111 1123678888888776 7999999999999999999997 9999999999986
No 111
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.86 E-value=3.1e-08 Score=91.21 Aligned_cols=76 Identities=25% Similarity=0.286 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH---hCCCEEEEchHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA---LGASGIFIGRPV 291 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~---~GA~~V~ig~~~ 291 (349)
.+.++.+.+.|++.+++.+...-+...|+ .++.+.++++.+ ++|||++|||++.+|+.+++. .||++|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 36688899999999999654322333454 899999998876 799999999999999998875 499999999999
Q ss_pred HH
Q 018919 292 VY 293 (349)
Q Consensus 292 l~ 293 (349)
+.
T Consensus 226 ~~ 227 (241)
T PRK14024 226 YA 227 (241)
T ss_pred Hc
Confidence 86
No 112
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.84 E-value=1.5e-07 Score=87.34 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 244 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 244 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+.++.+.++++.. ++||+++|||++.+|+.+++..| |++|++|++++.
T Consensus 186 ~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 186 YDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 3466777777765 79999999999999999999988 999999999875
No 113
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.84 E-value=4e-07 Score=84.24 Aligned_cols=149 Identities=22% Similarity=0.309 Sum_probs=97.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCC---Cc--hh---HHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH-Hh
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GR--RE---ADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ-TI 202 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~---g~--r~---~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~-~~ 202 (349)
.|.+.+.+.++.+.+.|+|.++|.+....+ |. +. +-++++ .+.+. ++.++++| +.
T Consensus 21 P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G---------------~~~~~~~~~~~~ir~~~ 85 (259)
T PF00290_consen 21 PDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNG---------------FTLEKIFELVKEIRKKE 85 (259)
T ss_dssp SSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT-----------------HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHhccC
Confidence 467888999999999999999988753211 10 00 111111 12233 68899999 66
Q ss_pred cCCcEEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCCC-----------------------
Q 018919 203 TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR----------------------- 237 (349)
Q Consensus 203 ~~~pv~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg~----------------------- 237 (349)
.++|+++-...++ +.++.|.++|+|++++-. +|-.
T Consensus 86 ~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~g 165 (259)
T PF00290_consen 86 PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASG 165 (259)
T ss_dssp TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SS
T ss_pred CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCc
Confidence 7999998776432 357889999999999842 1110
Q ss_pred --------CCCCc----hh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC
Q 018919 238 --------QLDYV----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 299 (349)
Q Consensus 238 --------~~~~~----~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G 299 (349)
...+. +. ..+.+..+++.. +.||++.-||++++|+.+.. .|||+|.|||+++..+...+
T Consensus 166 FiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 166 FIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp EEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred EEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 00111 11 234556665554 79999999999999997766 99999999999998765434
No 114
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.82 E-value=1.1e-06 Score=80.99 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=93.9
Q ss_pred HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-H
Q 018919 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-D 193 (349)
Q Consensus 115 e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~ 193 (349)
+++++....|..+..|.+.-.....+.++.+.++|++++.++- .|.. ..+. .
T Consensus 67 ~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~d-lp~e--------------------------~~~~~~ 119 (244)
T PRK13125 67 EEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPD-LLID--------------------------YPDDLE 119 (244)
T ss_pred HHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECC-CCCC--------------------------cHHHHH
Confidence 3444322234444555532122345678888999999998752 1110 0011 2
Q ss_pred HHHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.++.+++ .++..++-.- .+.+..+...+..-..+.++-.|++....-+...+.+.++++... +.||+++|||+++
T Consensus 120 ~~~~~~~~-~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~ 197 (244)
T PRK13125 120 KYVEIIKN-KGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSP 197 (244)
T ss_pred HHHHHHHH-cCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCH
Confidence 44556555 4776655332 235777888887666665654444321222233456677766552 5789999999999
Q ss_pred HHHHHHHHhCCCEEEEchHHHHHH
Q 018919 272 TDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
+++.+++..|||++.+||+++..+
T Consensus 198 e~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 198 EDARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHH
Confidence 999999999999999999988644
No 115
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.81 E-value=2.2e-07 Score=85.18 Aligned_cols=127 Identities=22% Similarity=0.250 Sum_probs=93.2
Q ss_pred HHHHHHHH-cCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 140 QLVRRAER-AGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 140 ~~~~~~~~-~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
+.++...+ .|++.+ .+++|.... ..+...+.|+++.+.+++||.+.+ +.+.|
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a~~-------------------------~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e 89 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGAKA-------------------------QHAREFDYIKSLRRLTTKDIEVGGGIRTKS 89 (234)
T ss_pred HHHHHHHhccCCCEEEEEECccccc-------------------------CCcchHHHHHHHHhhcCCeEEEcCCcCCHH
Confidence 46677777 689987 556654211 011226789999888899998876 68999
Q ss_pred HHHHHHHcCCCEEEEecC---------------CCC---------------CC---------------------------
Q 018919 217 DARIAVQAGAAGIIVSNH---------------GAR---------------QL--------------------------- 239 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~---------------gg~---------------~~--------------------------- 239 (349)
+++.+.++||+.+++... |.+ .+
T Consensus 90 ~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~td 169 (234)
T PRK13587 90 QIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTD 169 (234)
T ss_pred HHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEec
Confidence 999999999999988521 111 00
Q ss_pred ---CC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 240 ---DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 240 ---~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++ .-+.++.+.++.+.. ++||++.|||++.+|+.+++.+|+++|.+|++++.
T Consensus 170 i~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 170 IAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred ccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 00 112456667776654 79999999999999999999999999999999875
No 116
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.80 E-value=3.2e-07 Score=88.76 Aligned_cols=221 Identities=23% Similarity=0.300 Sum_probs=128.5
Q ss_pred ceeEcCeecCcceeecccccccccCCh------hhHHHHHHHHHcCCeEEecCCCC--------------CCHHH-----
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE------GEYATARAASAAGTIMTLSSWST--------------SSVEE----- 116 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~------~~~~la~aa~~~G~~~~~~~~~~--------------~~~e~----- 116 (349)
..+|.++++++-|+.|||+.. ..+++ ....+-+.-++.|+.+++++... .+.+.
T Consensus 5 P~~ig~~~lkNRiv~apm~~~-~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k 83 (341)
T PF00724_consen 5 PLKIGNLTLKNRIVMAPMTTN-MADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLK 83 (341)
T ss_dssp -EEETTEEESSSEEE----SS-TSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHH
T ss_pred CeeECCEEecCCeEECCCCCC-CcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHH
Confidence 467889999999999999643 22333 23455666677787777754311 01111
Q ss_pred -HHh---hCCCceEEEEee----------------cC-------------------Chh-------HHHHHHHHHHHcCC
Q 018919 117 -VAS---TGPGIRFFQLYV----------------YK-------------------DRN-------VVAQLVRRAERAGF 150 (349)
Q Consensus 117 -i~~---~~~~~~~~Ql~~----------------~~-------------------~~~-------~~~~~~~~~~~~G~ 150 (349)
+.+ ......++||+- +. +.+ ...+.+++++++|+
T Consensus 84 ~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGf 163 (341)
T PF00724_consen 84 KLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGF 163 (341)
T ss_dssp HHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111 122445667632 00 011 12345567778999
Q ss_pred CEEEEecCCCCCCchhHHhhhhcCCCCcCcccc--cCC-CCCC-ch-HHHHHHHHHhc--CCcEEEEEecC---------
Q 018919 151 KAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--FQG-LDLG-KM-DEDVKWLQTIT--KLPILVKGVLT--------- 214 (349)
Q Consensus 151 ~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~--~~~-~~~~-~~-~~~i~~i~~~~--~~pv~vK~v~~--------- 214 (349)
|+|+||... |+- -++|..|. ...+. ..| +.++ .| .+.|+.+|+.+ +.||.+|....
T Consensus 164 DGVEIH~ah---GyL----l~qFLSp~-~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~ 235 (341)
T PF00724_consen 164 DGVEIHAAH---GYL----LSQFLSPL-TNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITL 235 (341)
T ss_dssp SEEEEEEST---TSH----HHHHHSTT-T---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHS
T ss_pred CeEeecccc---hhh----hhheeeec-cCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCch
Confidence 999999864 222 22333331 00110 111 1111 24 67899999987 57899998621
Q ss_pred HH---HHHHHHHcCCCEEEEecCCCC------C-CCC--ch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 215 AE---DARIAVQAGAAGIIVSNHGAR------Q-LDY--VP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 215 ~~---~a~~a~~~G~d~I~v~~~gg~------~-~~~--~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
.+ .++.+.++|+|.+.++..... . ... .+ ........+++.+ ++|||+.|||++++.+.++++.|
T Consensus 236 ~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g 313 (341)
T PF00724_consen 236 EETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEG 313 (341)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc--CceEEEEeeecchhhhHHHHhcC
Confidence 12 367788899999876532111 0 001 11 1234556666666 79999999999999999999977
Q ss_pred -CCEEEEchHHHH
Q 018919 282 -ASGIFIGRPVVY 293 (349)
Q Consensus 282 -A~~V~ig~~~l~ 293 (349)
||+|.+||+++.
T Consensus 314 ~~DlV~~gR~~la 326 (341)
T PF00724_consen 314 KADLVAMGRPLLA 326 (341)
T ss_dssp STSEEEESHHHHH
T ss_pred CceEeeccHHHHh
Confidence 999999999985
No 117
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.79 E-value=1.8e-07 Score=82.94 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=98.3
Q ss_pred EeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcC-CCCc--Ccc-cc--------cC-CCCCCchHHH
Q 018919 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT-LPPF--LTL-KN--------FQ-GLDLGKMDED 195 (349)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~-~p~~--~~~-~~--------~~-~~~~~~~~~~ 195 (349)
++...+++...+.++.+.+.|++.+++++..+..-.-.+.++..+. ..-+ ... +. .. ....+.....
T Consensus 9 i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~ 88 (190)
T cd00452 9 VLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPE 88 (190)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHH
Confidence 3444566666777777777788888887765532122233333332 1000 000 00 00 0122323233
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
+...++..+.|+++ ++.|++++..+.++|+|.|.+... .+...+.+..+.+.++ ++|+++.||| +.+++.
T Consensus 89 ~~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p~~a~GGI-~~~n~~ 158 (190)
T cd00452 89 VVKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVRFMPTGGV-SLDNAA 158 (190)
T ss_pred HHHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCeEEEeCCC-CHHHHH
Confidence 44445556888877 677999999999999999998532 1113455566555442 5999999999 999999
Q ss_pred HHHHhCCCEEEEchHHHH
Q 018919 276 KALALGASGIFIGRPVVY 293 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~ 293 (349)
++++.||++|.+++.+..
T Consensus 159 ~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 159 EWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred HHHHCCCEEEEEchhcch
Confidence 999999999999998863
No 118
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.78 E-value=1.1e-07 Score=84.78 Aligned_cols=150 Identities=23% Similarity=0.337 Sum_probs=108.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEE-EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIA-LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~-i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
++.....+++++-.+.|+|-++ +++..... ..+. .+.+++..+...+|+.+.
T Consensus 27 rd~GDpVelA~~Y~e~GADElvFlDItAs~~--------------------------gr~~~~~vv~r~A~~vfiPltVG 80 (256)
T COG0107 27 RDAGDPVELAKRYNEEGADELVFLDITASSE--------------------------GRETMLDVVERVAEQVFIPLTVG 80 (256)
T ss_pred hhcCChHHHHHHHHHcCCCeEEEEecccccc--------------------------cchhHHHHHHHHHhhceeeeEec
Confidence 4556677899999999999874 34433211 1222 677888888889999887
Q ss_pred E-ecCHHHHHHHHHcCCCEEEEe------------------------------------------cCCCCC---C-----
Q 018919 211 G-VLTAEDARIAVQAGAAGIIVS------------------------------------------NHGARQ---L----- 239 (349)
Q Consensus 211 ~-v~~~~~a~~a~~~G~d~I~v~------------------------------------------~~gg~~---~----- 239 (349)
+ +.+.+++++++.+|||-|.+- .||||. +
T Consensus 81 GGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~W 160 (256)
T COG0107 81 GGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEW 160 (256)
T ss_pred CCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHH
Confidence 6 689999999999999988763 023321 0
Q ss_pred -------------------CCc--hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHHHHhh
Q 018919 240 -------------------DYV--PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYSLAA 297 (349)
Q Consensus 240 -------------------~~~--~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~~~~~ 297 (349)
|+. --.++.+..+++.+ ++|||++||..+.+|..+++..| ||++..++-|.|+
T Consensus 161 a~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~--- 235 (256)
T COG0107 161 AKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFG--- 235 (256)
T ss_pred HHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcC---
Confidence 011 11456777777777 89999999999999999999987 9999988888763
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCC
Q 018919 298 EGEKGVRRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 298 ~G~~gv~~~l~~l~~el~~~m~~~G~ 323 (349)
+ .-..|++..|...|.
T Consensus 236 --~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 236 --E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred --c--------ccHHHHHHHHHHcCC
Confidence 2 223566666666664
No 119
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.77 E-value=6.2e-08 Score=88.47 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.|.+.....-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++..| |++|++||++++
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4667888899999888763221112234 5788999998876 69999999999999999999988 999999999986
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 3
No 120
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.77 E-value=6.1e-08 Score=90.16 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH-HhCCCEEEEchHHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS 294 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal-~~GA~~V~ig~~~l~~ 294 (349)
+.++.+.+.|++.+++.+-..-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 667889999999999964322122344 4789999998876 79999999999999999999 6999999999999983
No 121
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.76 E-value=2.1e-07 Score=85.05 Aligned_cols=75 Identities=25% Similarity=0.320 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.++.+.+.|++.+++.+....+...+ +.++.+.++++.+ ++||++.|||++.+|+.+++..||++|++||+++.
T Consensus 150 ~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 150 ELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 567889999999999864322122233 5688899998876 79999999999999999999999999999999986
No 122
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.3e-07 Score=90.87 Aligned_cols=203 Identities=19% Similarity=0.211 Sum_probs=139.9
Q ss_pred eecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCC--CCHHHHHhh---------------------CC--
Q 018919 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVAST---------------------GP-- 122 (349)
Q Consensus 68 ~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~--~~~e~i~~~---------------------~~-- 122 (349)
..+.+-+++|||-- -|+.++.-.|-++|..++.+..-. ..++-+... .|
T Consensus 7 l~y~nk~iLApMvr------~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMVR------AGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHHH------hccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 34567889999942 257789999999999988764321 111111110 11
Q ss_pred -CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH
Q 018919 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ 200 (349)
Q Consensus 123 -~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~ 200 (349)
....||+-. .+++.-.+.++.+. ....++.+|++||- .|++-.+++.+. +.+++. ...|..+.
T Consensus 81 ~~rlilQ~gT-~sa~lA~e~A~lv~-nDvsgidiN~gCpK----------~fSi~~gmgaal---Lt~~dkl~~IL~sLv 145 (477)
T KOG2334|consen 81 NSRLILQIGT-ASAELALEAAKLVD-NDVSGIDINMGCPK----------EFSIHGGMGAAL---LTDPDKLVAILYSLV 145 (477)
T ss_pred cCeEEEEecC-CcHHHHHHHHHHhh-cccccccccCCCCC----------ccccccCCCchh---hcCHHHHHHHHHHHH
Confidence 235677643 45665555554443 34667889999984 244333443333 356766 77899999
Q ss_pred HhcCCcEEEEEec------CHHHHHHHHHcCCCEEEEecCCCCC--CCCchhhHHHHHHHHHHhcCCCcEEEecCCCC--
Q 018919 201 TITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRR-- 270 (349)
Q Consensus 201 ~~~~~pv~vK~v~------~~~~a~~a~~~G~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~-- 270 (349)
+...+|+.+|+.. +.+..++..+.|+.+|.|+ +.+. -..-+++.+.+.+++..+. .+|||+.||+++
T Consensus 146 k~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh--~rt~d~r~~~~~~~~~i~~i~~~~~-~V~vi~ng~~~~~e 222 (477)
T KOG2334|consen 146 KGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVH--CRTRDERNQEPATKDYIREIAQACQ-MVPVIVNGGSMDIE 222 (477)
T ss_pred hcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEE--eeccccCCCCCCCHHHHHHHHHHhc-cceEeeccchhhHH
Confidence 9999999999872 3456788889999999994 4321 1234667888999998883 399999999999
Q ss_pred -HHHHHHHHH-hCCCEEEEchHHHHH
Q 018919 271 -GTDVFKALA-LGASGIFIGRPVVYS 294 (349)
Q Consensus 271 -~~dv~kal~-~GA~~V~ig~~~l~~ 294 (349)
..|+.+.-. .|++.||+.|+..+.
T Consensus 223 ~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 223 QYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred hhhhHHHHHHHhccchhhhhHhhhcC
Confidence 889988776 799999999966543
No 123
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.76 E-value=2.3e-06 Score=76.88 Aligned_cols=196 Identities=15% Similarity=0.149 Sum_probs=107.0
Q ss_pred eEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCC------CHHHHHhhCC--CceE-EEEeecCC
Q 018919 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------SVEEVASTGP--GIRF-FQLYVYKD 134 (349)
Q Consensus 64 ~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~------~~e~i~~~~~--~~~~-~Ql~~~~~ 134 (349)
+|.|++|.+.+++..=-+. + ...+.++....|.-.+.-..... .-+.+.+..+ +..+ .+--+..+
T Consensus 1 ki~g~~f~SRL~lGTgky~---s---~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaGc~t 74 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKYP---S---PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAGCRT 74 (247)
T ss_dssp -ETTEEES-SEEEE-STSS---S---HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT-SS
T ss_pred CcCCEEeecceEEecCCCC---C---HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCCCCC
Confidence 4778999999998762221 2 23577788888887654222111 1233333333 2111 12222344
Q ss_pred hhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEE
Q 018919 135 RNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKG 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~ 211 (349)
.+.-...++.++++ |-++|-+.+=.. +. ..-|+.++.++..+... +.-|+-=.
T Consensus 75 A~EAv~~A~laRe~~~t~wIKLEVi~D---------------~~---------~L~PD~~etl~Aae~Lv~eGF~VlPY~ 130 (247)
T PF05690_consen 75 AEEAVRTARLAREAFGTNWIKLEVIGD---------------DK---------TLLPDPIETLKAAEILVKEGFVVLPYC 130 (247)
T ss_dssp HHHHHHHHHHHHHTTS-SEEEE--BS----------------TT---------T--B-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCC---------------CC---------CcCCChhHHHHHHHHHHHCCCEEeecC
Confidence 45555566666676 777775544211 00 01233344444433333 44444333
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCC-CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
..++-.++++.++||..|.--+.. |+ .-|..+...|..+.+.. ++|||.|+||.+++|+.+++++|||+|.+-++
T Consensus 131 ~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 131 TDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp -S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred CCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 467889999999999999764321 11 12444567788888877 89999999999999999999999999999998
Q ss_pred HHH
Q 018919 291 VVY 293 (349)
Q Consensus 291 ~l~ 293 (349)
+..
T Consensus 207 iA~ 209 (247)
T PF05690_consen 207 IAK 209 (247)
T ss_dssp HHT
T ss_pred Hhc
Confidence 853
No 124
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.76 E-value=8.6e-08 Score=87.45 Aligned_cols=77 Identities=26% Similarity=0.354 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.+.++.+.+.|++.+++..-..-+...+ ..++.+.++.+.+ ++||++.|||++.+|+.+++..||++|++||+++.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 3568889999999988753221111223 4688888888876 799999999999999999999999999999999863
No 125
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.72 E-value=1.9e-07 Score=86.21 Aligned_cols=129 Identities=21% Similarity=0.326 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHH
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAE 216 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~ 216 (349)
..+.++..++.|+++|-+..+....+ .-++++..+++.+++|+..|.. .++.
T Consensus 70 ~~~~a~~y~~~GA~aiSVlTe~~~F~---------------------------Gs~~dL~~v~~~~~~PvL~KDFIid~~ 122 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVLTEPKFFG---------------------------GSLEDLRAVRKAVDLPVLRKDFIIDPY 122 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE--SCCCH---------------------------HHHHHHHHHHHHSSS-EEEES---SHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCC---------------------------CCHHHHHHHHHHhCCCcccccCCCCHH
Confidence 35677788899999998765532110 0157899999989999999984 7888
Q ss_pred HHHHHHHcCCCEEEEecC--C--------------C----------------------------CCCCCchhhHHHHHHH
Q 018919 217 DARIAVQAGAAGIIVSNH--G--------------A----------------------------RQLDYVPATIMALEEV 252 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~--g--------------g----------------------------~~~~~~~~~~~~l~~i 252 (349)
++..+..+|||+|.+.-. + | |.+.+-...+....++
T Consensus 123 QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l 202 (254)
T PF00218_consen 123 QIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEEL 202 (254)
T ss_dssp HHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHH
T ss_pred HHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHH
Confidence 999999999999887521 0 0 1122222233445556
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 253 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 253 ~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
...++.++.+|+.+||.+.+|+.++...|+|+|.||++++.
T Consensus 203 ~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 203 APLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp HCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHT
T ss_pred HhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 66666679999999999999999999999999999999986
No 126
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.69 E-value=5.4e-07 Score=81.71 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v----- 212 (349)
...++.+.+.|++-+.+-+|... +. . .+.+. .+.++.+++.. .|+.+|.+
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~--------------~~-----~----g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~ 132 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGA--------------LK-----S----GDWDAVEADIRAVVEAA-GGAVLKVIIETCL 132 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHH--------------hc-----C----CCHHHHHHHHHHHHHhc-CCceEEEEeecCc
Confidence 35667777889999876655321 00 0 01222 45688887754 47888986
Q ss_pred cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++.++ ++.+.++|+|+|..+.. - ..+..+.+.+..+++.++++++|.++|||++.+|+.+++.+||+.++..
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG-~---~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTG-F---STGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCC-C---CCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 33333 46688999998877543 1 2234567778778888877899999999999999999999999998765
Q ss_pred h
Q 018919 289 R 289 (349)
Q Consensus 289 ~ 289 (349)
+
T Consensus 209 ~ 209 (221)
T PRK00507 209 A 209 (221)
T ss_pred c
Confidence 4
No 127
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.69 E-value=7.6e-07 Score=81.63 Aligned_cols=128 Identities=26% Similarity=0.287 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.++++..++.|+.+|-+..+....+ ..+++++.+++.+++||+.|.. .++.+
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~---------------------------Gs~~~l~~v~~~v~~PvL~KDFIid~~Q 116 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFG---------------------------GSLEDLKSVSSELKIPVLRKDFILDEIQ 116 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCC---------------------------CCHHHHHHHHHhcCCCEEeccccCCHHH
Confidence 4677788999999987655532110 0157888888888999999984 68888
Q ss_pred HHHHHHcCCCEEEEecC--CC------------------------------------------CCCCCchhhHHHHHHHH
Q 018919 218 ARIAVQAGAAGIIVSNH--GA------------------------------------------RQLDYVPATIMALEEVV 253 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~--gg------------------------------------------~~~~~~~~~~~~l~~i~ 253 (349)
...+..+|||+|.+.-. +. |.+.+-........++.
T Consensus 117 I~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~ 196 (247)
T PRK13957 117 IREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVA 196 (247)
T ss_pred HHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHH
Confidence 88888899999887521 00 01111112334555666
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 254 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 254 ~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
..++.+..+|+.|||.+++|+.++... ||+|.||+.++.+
T Consensus 197 ~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 197 AFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred hhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 677667889999999999999887766 9999999999863
No 128
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.68 E-value=1.2e-06 Score=79.26 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=108.4
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcC--CCCcCcc-----cc---c-----CC---CC
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPPFLTL-----KN---F-----QG---LD 188 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~--~p~~~~~-----~~---~-----~~---~~ 188 (349)
+-++...+.+...+.++.+.+.|.+.++||+++|..-...+.++..+. .|. +.. .+ . .| ..
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~-~~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPG-MILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCC-eEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 334445688888899999999999999999999865444455543321 121 100 00 0 01 45
Q ss_pred CCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC
Q 018919 189 LGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 267 (349)
.|.+ -+.++..++ .++|++- ++.|+.++..|.++|++.|.++-.+ ..|+ ..++.+..-+ .+++++.+||
T Consensus 97 sP~~~~~v~~~~~~-~~i~~iP-G~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~---~~ikal~~p~-p~i~~~ptGG 166 (222)
T PRK07114 97 TPLFNPDIAKVCNR-RKVPYSP-GCGSLSEIGYAEELGCEIVKLFPGS----VYGP---GFVKAIKGPM-PWTKIMPTGG 166 (222)
T ss_pred CCCCCHHHHHHHHH-cCCCEeC-CCCCHHHHHHHHHCCCCEEEECccc----ccCH---HHHHHHhccC-CCCeEEeCCC
Confidence 6666 455666654 6898874 7899999999999999999996422 1233 3344444434 3799999999
Q ss_pred CCC-HHHHHHHHHhCCCEEEEchHHH
Q 018919 268 VRR-GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 268 I~~-~~dv~kal~~GA~~V~ig~~~l 292 (349)
|.- .+++..++++||.+|.+|+.++
T Consensus 167 V~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 167 VEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred CCcchhcHHHHHhCCCEEEEEChhhc
Confidence 995 5899999999999999999775
No 129
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.68 E-value=4.4e-07 Score=82.94 Aligned_cols=75 Identities=28% Similarity=0.251 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH-HHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k-al~~GA~~V~ig~~~l 292 (349)
.+.++.+.++|+|.|++++....+...| +.++.+.++++.+ ++||+++|||++.+|+.+ +...||++|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 4678999999999999976322111223 3688888888876 799999999999999999 5558999999999985
No 130
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.68 E-value=4.5e-07 Score=82.82 Aligned_cols=128 Identities=25% Similarity=0.398 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
.+.++...+.|++.+ .+++|....+ .+..++.|+++.+.+++|+.+.+ +.+.+
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa~~g-------------------------~~~n~~~i~~i~~~~~~~i~vgGGIrs~e 86 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAAKEG-------------------------RGSNLELIKEIAKETGIPIQVGGGIRSIE 86 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHHCCT-------------------------HHHHHHHHHHHHHHSSSEEEEESSE-SHH
T ss_pred HHHHHHHHHcCCCEEEEEEccCcccC-------------------------chhHHHHHHHHHhcCCccEEEeCccCcHH
Confidence 456777788899997 5566532100 01126789999999999998876 68999
Q ss_pred HHHHHHHcCCCEEEEec----------------------------CC-------CCC-----------------------
Q 018919 217 DARIAVQAGAAGIIVSN----------------------------HG-------ARQ----------------------- 238 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~----------------------------~g-------g~~----------------------- 238 (349)
+++.+.++|++.|+++. +| ...
T Consensus 87 d~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 166 (229)
T PF00977_consen 87 DAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIIL 166 (229)
T ss_dssp HHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999861 11 000
Q ss_pred ----CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 239 ----LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 239 ----~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.++ .-+.++.+.++++.. ++|+|++|||++.+|+.++...|+++|.+|++|+.
T Consensus 167 tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 167 TDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp EETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred eeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 011 124567788888877 89999999999999999999999999999999975
No 131
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.68 E-value=6.5e-07 Score=82.00 Aligned_cols=128 Identities=29% Similarity=0.411 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
.+.++...+.|++.+ .+++|... + .+...+.++++.+.+.+|+.+.+ +.+.|
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~~-~-------------------------~~~n~~~i~~i~~~~~~~v~vgGGir~~e 91 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAIM-G-------------------------RGDNDEAIRELAAAWPLGLWVDGGIRSLE 91 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCcccc-C-------------------------CCccHHHHHHHHHhCCCCEEEecCcCCHH
Confidence 457778888899987 45555310 0 11115778899888889998776 57899
Q ss_pred HHHHHHHcCCCEEEEecC--------------CC-CC---CC--Cc----------------------------------
Q 018919 217 DARIAVQAGAAGIIVSNH--------------GA-RQ---LD--YV---------------------------------- 242 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~--------------gg-~~---~~--~~---------------------------------- 242 (349)
+++.+.++||+.+++... |. +- +| .+
T Consensus 92 dv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~di~~~G 171 (233)
T cd04723 92 NAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVG 171 (233)
T ss_pred HHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEEEcCccc
Confidence 999999999999987531 21 10 00 00
Q ss_pred ---hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 243 ---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
.+.++.+.++.+.. .+||++.|||++.+|+.+++.+||++|.+|++++.+
T Consensus 172 ~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 172 SGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred cCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 12234555555544 799999999999999999999999999999999863
No 132
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.66 E-value=4.3e-07 Score=84.14 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.+++++........|+ .++.+.++.+.. ++|||++|||++.+|+.+++.. ||++|++|+++.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGY-DLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 36678899999999999764321111232 688888888876 7999999999999999999985 9999999999986
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 3
No 133
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.65 E-value=8.9e-07 Score=80.18 Aligned_cols=129 Identities=26% Similarity=0.398 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 138 VAQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
..+.++...+.|++.+ .+++|....| .+...+.++++.+.+++||-+.+ +.+.
T Consensus 33 P~~~a~~~~~~Ga~~lHlVDLdgA~~g-------------------------~~~n~~~i~~i~~~~~~~vQvGGGIRs~ 87 (241)
T COG0106 33 PLEVAKKWSDQGAEWLHLVDLDGAKAG-------------------------GPRNLEAIKEILEATDVPVQVGGGIRSL 87 (241)
T ss_pred HHHHHHHHHHcCCcEEEEeeccccccC-------------------------CcccHHHHHHHHHhCCCCEEeeCCcCCH
Confidence 4567778888999998 5667654211 11115779999999999997776 6889
Q ss_pred HHHHHHHHcCCCEEEEec---------------CCCC-----------------C-------------------------
Q 018919 216 EDARIAVQAGAAGIIVSN---------------HGAR-----------------Q------------------------- 238 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~---------------~gg~-----------------~------------------------- 238 (349)
++++.++++|++.+++.. +|++ +
T Consensus 88 ~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~T 167 (241)
T COG0106 88 EDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYT 167 (241)
T ss_pred HHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEE
Confidence 999999999999998862 1221 0
Q ss_pred ---CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEchHHHH
Q 018919 239 ---LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 293 (349)
Q Consensus 239 ---~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-GA~~V~ig~~~l~ 293 (349)
.|+ .-+.++.+.++++++ ++||+++|||+|-+|+..+-.+ |..+|.+|++++.
T Consensus 168 dI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 168 DISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred ecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence 011 134677888888887 8999999999999999888888 9999999999985
No 134
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.64 E-value=1.8e-06 Score=77.32 Aligned_cols=134 Identities=25% Similarity=0.258 Sum_probs=86.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEe-cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcE--E
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALT-VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPI--L 208 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~-~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv--~ 208 (349)
.|+..+.+.++.+.+.|++.|.+. .|++.. | +..+ .+.++++++..+.|+ .
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~-------------~------------~~~~~~~~v~~i~~~~~~~v~v~ 62 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFV-------------P------------NLTFGPPVLEALRKYTDLPIDVH 62 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-------------C------------CcccCHHHHHHHHhcCCCcEEEE
Confidence 467778899999999999999886 344321 1 1112 566777776556664 2
Q ss_pred EEEecCHHHHHHHHHcCCCEEEEecC---------------CCC--------C-----------CC-----------Cc-
Q 018919 209 VKGVLTAEDARIAVQAGAAGIIVSNH---------------GAR--------Q-----------LD-----------YV- 242 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~v~~~---------------gg~--------~-----------~~-----------~~- 242 (349)
++.....+.++.+.++|+|+|++... |-. . .+ ++
T Consensus 63 lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~ 142 (210)
T TIGR01163 63 LMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQ 142 (210)
T ss_pred eeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcc
Confidence 44333445567777788888777421 000 0 00 11
Q ss_pred ---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 243 ---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..++.+.++++.++ .++|++++|||+ .+++.++++.|||.+.+||+++
T Consensus 143 ~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 143 KFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHh
Confidence 223344555554442 137999999996 6999999999999999999987
No 135
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.64 E-value=4.1e-07 Score=83.55 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.|.+.+....... ....++.+.++++.+ ++||++.|||++.+|+.+++.+||++|++|++++.
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 47788999999999998653111111 235788889998877 79999999999999999998899999999999975
No 136
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.63 E-value=1.1e-06 Score=77.71 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=68.0
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 275 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 275 (349)
+...++..+++.+.. +.|++++..+.+.|+|+|.+.-.. . ....+.+..++..+ .++|+++.||| +.+++.
T Consensus 97 ~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt~---~---~~G~~~l~~~~~~~-~~ipvvaiGGI-~~~n~~ 167 (187)
T PRK07455 97 LIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPVQ---A---VGGADYIKSLQGPL-GHIPLIPTGGV-TLENAQ 167 (187)
T ss_pred HHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcCC---c---ccCHHHHHHHHhhC-CCCcEEEeCCC-CHHHHH
Confidence 344455567787775 899999999999999999984220 1 11245666666665 26999999999 669999
Q ss_pred HHHHhCCCEEEEchHHH
Q 018919 276 KALALGASGIFIGRPVV 292 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l 292 (349)
..++.||++|.+++.++
T Consensus 168 ~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 168 AFIQAGAIAVGLSGQLF 184 (187)
T ss_pred HHHHCCCeEEEEehhcc
Confidence 99999999999999875
No 137
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.63 E-value=1.1e-06 Score=78.59 Aligned_cols=116 Identities=24% Similarity=0.302 Sum_probs=88.6
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CC
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KL 205 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~ 205 (349)
+-+....+.+...+.++.+.+.|++.+++|+++|.. .+.++++++++ ++
T Consensus 11 iaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a------------------------------~~~i~~l~~~~~~~ 60 (204)
T TIGR01182 11 VPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVA------------------------------LDAIRLLRKEVPDA 60 (204)
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccH------------------------------HHHHHHHHHHCCCC
Confidence 444445678888899999999999999999976521 46688888877 57
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
.|.+..+.+.++++.+.++|+++|+ |.+- +.+.+... +. .++|++- |+.|+.++.+|+.+||+.|
T Consensus 61 ~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~~---------~~~v~~~~-~~--~~i~~iP--G~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 61 LIGAGTVLNPEQLRQAVDAGAQFIV-SPGL---------TPELAKHA-QD--HGIPIIP--GVATPSEIMLALELGITAL 125 (204)
T ss_pred EEEEEeCCCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHH-HH--cCCcEEC--CCCCHHHHHHHHHCCCCEE
Confidence 7888889999999999999999994 3221 12233222 22 2677775 9999999999999999998
Q ss_pred EE
Q 018919 286 FI 287 (349)
Q Consensus 286 ~i 287 (349)
=+
T Consensus 126 Kl 127 (204)
T TIGR01182 126 KL 127 (204)
T ss_pred EE
Confidence 54
No 138
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.62 E-value=5.3e-06 Score=74.30 Aligned_cols=170 Identities=16% Similarity=0.143 Sum_probs=107.7
Q ss_pred ChhhHHHHHHHHHcCCeEE-ecC-C----CCCCHHHHHhhCCC-ceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 87 PEGEYATARAASAAGTIMT-LSS-W----STSSVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~~-~----~~~~~e~i~~~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
++.-..+++++ +.|+..+ +++ + +...++++++..++ ....-+.. -|++. ..++.+.++|++.+.++..+
T Consensus 11 ~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~-~d~~~--~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 11 IEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKT-MDAGE--YEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred HHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEee-ccchH--HHHHHHHHcCCCEEEEeccC
Confidence 34445677877 6676643 331 1 12234556655552 23333322 14442 24778889999999877643
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe--cC-HHHHHHHHHcCCCEEEEecCC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHG 235 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v--~~-~~~a~~a~~~G~d~I~v~~~g 235 (349)
+. .. .+.++++++ .++++++-.. .+ .+.++.+.+.|+|.|.+.. |
T Consensus 87 ~~-----------------------------~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p-g 135 (206)
T TIGR03128 87 DD-----------------------------ATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT-G 135 (206)
T ss_pred CH-----------------------------HHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC-C
Confidence 20 01 245666665 6899887543 22 4788999999999998842 2
Q ss_pred CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 236 ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
......++..++.+.++++.++ ..++.++||| +.+.+.+++..||+.+.+||+++.
T Consensus 136 ~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 136 LDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred cCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 1111223445666777776653 4677779999 778999999999999999999763
No 139
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.60 E-value=1.1e-06 Score=78.62 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=76.8
Q ss_pred HHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC--CchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
++.+|+.. +..|.+ .+.+.++++.+.+.|+|+|.++.-..+... ..+..++.+.++.+.+ ++||++.||| +++
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 44555544 344554 467889999999999999977532222111 1223467777777766 7999999999 899
Q ss_pred HHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
++.+++.+||++|.+|+++... +........+++.++.
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~~------~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFSS------ANPYSKAKRYAESIKK 199 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhcC------CCHHHHHHHHHHHHhh
Confidence 9999999999999999999752 2233445555555543
No 140
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.59 E-value=6.2e-07 Score=82.10 Aligned_cols=125 Identities=18% Similarity=0.305 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.+.++..++.|+.+|-+-.|.+..... .+.|+.+++.+.+||..|.- .++..
T Consensus 69 ~~ia~~Ye~~GAa~iSVLTd~~~F~Gs---------------------------~e~L~~v~~~v~~PvL~KDFiiD~yQ 121 (254)
T COG0134 69 VEIAKAYEEGGAAAISVLTDPKYFQGS---------------------------FEDLRAVRAAVDLPVLRKDFIIDPYQ 121 (254)
T ss_pred HHHHHHHHHhCCeEEEEecCccccCCC---------------------------HHHHHHHHHhcCCCeeeccCCCCHHH
Confidence 346777788899999776554321111 35666666666777777763 45555
Q ss_pred HHHHHHcCCCEEEE-----------------------------------------------ecCCCCCCCCchhhHHHHH
Q 018919 218 ARIAVQAGAAGIIV-----------------------------------------------SNHGARQLDYVPATIMALE 250 (349)
Q Consensus 218 a~~a~~~G~d~I~v-----------------------------------------------~~~gg~~~~~~~~~~~~l~ 250 (349)
+..|..+|||+|-+ -|..-+ +-...++...
T Consensus 122 I~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~---tf~vdl~~t~ 198 (254)
T COG0134 122 IYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLT---TLEVDLETTE 198 (254)
T ss_pred HHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcc---hheecHHHHH
Confidence 55555555555443 222111 1122344455
Q ss_pred HHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 251 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 251 ~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++...++.+..+|..+||++++|+.+....|||++.||+++|.
T Consensus 199 ~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~ 241 (254)
T COG0134 199 KLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMR 241 (254)
T ss_pred HHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhc
Confidence 6666666678999999999999999999999999999999996
No 141
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.57 E-value=2.2e-06 Score=78.88 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~ 216 (349)
.+.++...+.|++.+ .+++|....| .+...+.++++.+.+ .|+.+.+ +.+.+
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a~~g-------------------------~~~n~~~i~~i~~~~-~~v~vGGGIrs~e 86 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKAIEN-------------------------SVENLPVLEKLSEFA-EHIQIGGGIRSLD 86 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcccC-------------------------CcchHHHHHHHHhhc-CcEEEecCCCCHH
Confidence 456777788999987 5566542111 111256778887766 6887765 57888
Q ss_pred HHHHHHHcCCCEEEEec--------------CCCC---------------------C-----------------------
Q 018919 217 DARIAVQAGAAGIIVSN--------------HGAR---------------------Q----------------------- 238 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~--------------~gg~---------------------~----------------------- 238 (349)
+++.+.++|++.|++.. +|.+ .
T Consensus 87 ~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI 166 (241)
T PRK14114 87 YAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEI 166 (241)
T ss_pred HHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEee
Confidence 88888888888877752 0110 0
Q ss_pred -CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh-----C-CCEEEEchHHHH
Q 018919 239 -LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFIGRPVVY 293 (349)
Q Consensus 239 -~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~-----G-A~~V~ig~~~l~ 293 (349)
.++ .-+.++.+.++++.. ++|||++|||++.+|+.++..+ | +++|.+|++++.
T Consensus 167 ~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~ 228 (241)
T PRK14114 167 EKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE 228 (241)
T ss_pred chhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence 001 123567777777665 7999999999999999999887 6 999999999975
No 142
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.52 E-value=1.2e-05 Score=73.00 Aligned_cols=135 Identities=24% Similarity=0.249 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-cCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI-TKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~-~~~pv~vK 210 (349)
.|.....+.++++++.|++.+-+++=- ..| +| +-.| .+.++++|+. +++|+=+-
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmD-----------G~F-vp------------n~tfg~~~i~~i~~~~~~~~~dvH 64 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMD-----------NHY-VP------------NLTFGAPICKALRDYGITAPIDVH 64 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeccc-----------Ccc-cC------------ccccCHHHHHHHHHhCCCCCEEEE
Confidence 466677889999999999987655411 011 12 2234 6789999987 68887665
Q ss_pred E-ecCHH-HHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc-
Q 018919 211 G-VLTAE-DARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV- 242 (349)
Q Consensus 211 ~-v~~~~-~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~- 242 (349)
. +.+|+ .++...++|+|.|+++-. |- +. .| +|
T Consensus 65 LMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq 144 (220)
T PRK08883 65 LMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQ 144 (220)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCc
Confidence 5 35564 467888999999998621 11 00 01 22
Q ss_pred ---hhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 243 ---PATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..++-+.++++.... ++||.++|||. .+.+.+..++|||.+.+||+++
T Consensus 145 ~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 145 SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 2345666666665532 48999999999 7999999999999999999865
No 143
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.51 E-value=4e-06 Score=74.73 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=87.4
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CC
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KL 205 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~ 205 (349)
+-+....+.+...+.++.+.+.|+..++||+++|.. .+.|+++++++ ++
T Consensus 7 v~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a------------------------------~~~I~~l~~~~~~~ 56 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAA------------------------------LDAIRAVAAEVEEA 56 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccH------------------------------HHHHHHHHHHCCCC
Confidence 334445678888899999999999999999987521 36688888776 46
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
-|.+..+.+.++++.+.++|+++++--+. ..+.+... +.. ++|++ -|+.|+.++..|+.+||+.|
T Consensus 57 ~vGAGTVl~~e~a~~ai~aGA~FivSP~~----------~~~vi~~a-~~~--~i~~i--PG~~TptEi~~A~~~Ga~~v 121 (201)
T PRK06015 57 IVGAGTILNAKQFEDAAKAGSRFIVSPGT----------TQELLAAA-NDS--DVPLL--PGAATPSEVMALREEGYTVL 121 (201)
T ss_pred EEeeEeCcCHHHHHHHHHcCCCEEECCCC----------CHHHHHHH-HHc--CCCEe--CCCCCHHHHHHHHHCCCCEE
Confidence 67888899999999999999999954211 12233222 222 56655 89999999999999999998
Q ss_pred EE
Q 018919 286 FI 287 (349)
Q Consensus 286 ~i 287 (349)
=+
T Consensus 122 K~ 123 (201)
T PRK06015 122 KF 123 (201)
T ss_pred EE
Confidence 54
No 144
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.50 E-value=3.9e-06 Score=75.23 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=60.6
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCC--CCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHG--ARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~g--g~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.+.+++..+.+.|+|.|.++.-. .+... ..+..++.+.++++.. .++||++.||| +.+++.+++++||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 357889999999999999986321 11111 1112367788887766 24999999999 6899999999999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+.+..
T Consensus 189 s~i~~ 193 (212)
T PRK00043 189 SAITG 193 (212)
T ss_pred HHhhc
Confidence 98763
No 145
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.47 E-value=9.1e-06 Score=71.63 Aligned_cols=172 Identities=23% Similarity=0.125 Sum_probs=113.4
Q ss_pred ChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC---CceEEEEeecCC----hhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~---~~~~~Ql~~~~~----~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
.+.-..+++.+.+.|+..++-.. ..++.+.+..+ .+.++++..+ + .+...+.++++.+.|++++.+....
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~-~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFP-TGLTTTEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCC-CCCCcHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 34456788888889987765332 22344443322 2345555432 2 4567788899999999999875421
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh--cCCcEEEEEec----CHHHH----HHHHHcCCCE
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI--TKLPILVKGVL----TAEDA----RIAVQAGAAG 228 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~--~~~pv~vK~v~----~~~~a----~~a~~~G~d~ 228 (349)
- + .|. .+.+. .+.++.+++. .++|++++.+. +++.. +.+.+.|+|+
T Consensus 89 ~------------~-~~~----------~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~ 145 (201)
T cd00945 89 G------------S-LKE----------GDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADF 145 (201)
T ss_pred H------------H-HhC----------CCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCE
Confidence 0 0 010 01222 5678888887 48999999873 44443 3457899999
Q ss_pred EEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 229 IIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 229 I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
|..+.... .+...+..+.++.+.++.++++++.||+.+.+++..++.+||+++.+|
T Consensus 146 iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 146 IKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred EEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 99864211 122345666777766644689999999999999999999999999875
No 146
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.47 E-value=3.7e-06 Score=75.67 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEE--eec--CChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQL--YVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql--~~~--~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
..+.+.|.++|+..+.- .+..++..++... +....-. |+. ...+.-...++.+.+.|++.+.+-++...
T Consensus 21 ~~lc~~A~~~~~~avcv--~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~--- 95 (211)
T TIGR00126 21 ITLCAQAKTYKFAAVCV--NPSYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGA--- 95 (211)
T ss_pred HHHHHHHHhhCCcEEEe--CHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHh---
Confidence 46777788888665421 2222332222211 1111111 222 22333345667788899999987665321
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecC
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~ 234 (349)
+ . . .+.+. .++++++++..+ .+.+|.+ ++.++ ++.+.++|+|+|..|..
T Consensus 96 --------l--~------~----g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTG 154 (211)
T TIGR00126 96 --------L--K------D----GNEEVVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTG 154 (211)
T ss_pred --------h--h------C----CcHHHHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 0 0 0 01222 567888888763 3333444 33333 56789999999999742
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 235 GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 235 gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
. ..+..+.+.+..+++.++++++|-++|||++.+|+++++++||+.++..
T Consensus 155 -f---~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 155 -F---GAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred -C---CCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 1 1233455666666666666899999999999999999999999876543
No 147
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.47 E-value=1.3e-05 Score=71.40 Aligned_cols=168 Identities=20% Similarity=0.145 Sum_probs=105.8
Q ss_pred ChhhHHHHHHHHHcCCeEE-ec-----CCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 87 PEGEYATARAASAAGTIMT-LS-----SWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~-----~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
++.-..+++++.+. +..+ ++ +++...++.+++..+ -+....+.. .+++ ...++.+.++|++.+.++...
T Consensus 12 ~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v-~~~~--~~~~~~~~~aGad~i~~h~~~ 87 (202)
T cd04726 12 LEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKT-ADAG--ALEAEMAFKAGADIVTVLGAA 87 (202)
T ss_pred HHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEe-cccc--HHHHHHHHhcCCCEEEEEeeC
Confidence 34445677777776 4433 22 111223445555444 234444443 2333 134577889999999876532
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEE--EEecCHHHHHHHHHcCCCEEEEec-CC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSN-HG 235 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~v--K~v~~~~~a~~a~~~G~d~I~v~~-~g 235 (349)
+ +.. .+.++.+++ .++++++ =+..+++++..+...|+|.+.+.- ..
T Consensus 88 ~-----------------------------~~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~ 137 (202)
T cd04726 88 P-----------------------------LSTIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGID 137 (202)
T ss_pred C-----------------------------HHHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccc
Confidence 1 111 244666664 5888775 345688888889999999988831 11
Q ss_pred CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 236 ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+ +..+.+...+.+.++.+.. ++|++++|||+ .+++.+++..|||+|.+||+++
T Consensus 138 ~-~~~~~~~~~~~i~~~~~~~--~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 138 A-QAAGGWWPEDDLKKVKKLL--GVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred c-cccCCCCCHHHHHHHHhhc--CCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhc
Confidence 1 1111244566677666543 79999999996 8999999999999999999975
No 148
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.46 E-value=7.5e-06 Score=73.21 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=106.5
Q ss_pred ChhhHHHHHHHHHcCCeEE-ecCCCCCC---HHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 87 PEGEYATARAASAAGTIMT-LSSWSTSS---VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~~~~~~~---~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.-..+++++.+.|+..+ ++-.+... ++++++..|.. .+-.-. =.+.+.++.+.++|++.++ +|.
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~-~vGAGT----Vl~~~~a~~a~~aGA~Fiv----sP~- 88 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDA-LIGAGT----VLNPEQLRQAVDAGAQFIV----SPG- 88 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCC-EEEEEe----CCCHHHHHHHHHcCCCEEE----CCC-
Confidence 3334589999999999866 33333333 34455444421 111111 1234568888999999874 221
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCc
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV 242 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~ 242 (349)
.+ .+.++..+ +.++|++- ++.|+.++..|.++|+|.|.++-.+ .-+|
T Consensus 89 -------------------------~~---~~v~~~~~-~~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG 135 (204)
T TIGR01182 89 -------------------------LT---PELAKHAQ-DHGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGG 135 (204)
T ss_pred -------------------------CC---HHHHHHHH-HcCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCC
Confidence 01 23455544 56899876 7899999999999999999996432 1123
Q ss_pred hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 243 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 243 ~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+. .++.++.-+ .+++++.+|||.- +++.++|++||.+|.+|+.++.
T Consensus 136 ~~---yikal~~pl-p~i~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 136 VK---MLKALAGPF-PQVRFCPTGGINL-ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred HH---HHHHHhccC-CCCcEEecCCCCH-HHHHHHHhCCCEEEEEChhhcC
Confidence 43 344444444 3799999999987 8999999999999999998763
No 149
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.44 E-value=4.2e-06 Score=87.26 Aligned_cols=128 Identities=21% Similarity=0.284 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~ 217 (349)
.+.++..++.|+.+|-+-.+....+ . -+++++.+|+.+++||+.|. +.++.+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~--------------------------G-s~~~l~~vr~~v~~PvLrKDFIid~~Q 125 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFL--------------------------G-SLDDFDKVRAAVHIPVLRKDFIVTDYQ 125 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCC--------------------------C-CHHHHHHHHHhCCCCEEeccccCCHHH
Confidence 4567778889999997655432110 0 04778888888888888888 467777
Q ss_pred HHHHHHcCCCEEEEecC--C--------------C----------------------------CCCCCchhhHHHHHHHH
Q 018919 218 ARIAVQAGAAGIIVSNH--G--------------A----------------------------RQLDYVPATIMALEEVV 253 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~--g--------------g----------------------------~~~~~~~~~~~~l~~i~ 253 (349)
+..+..+|||+|.+.-. + | |.+.+-...++...++.
T Consensus 126 I~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~ 205 (695)
T PRK13802 126 IWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELA 205 (695)
T ss_pred HHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHH
Confidence 88888888888876411 0 0 11111122344555666
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 254 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 254 ~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..++.++.+|+.+||++++|+..+..+|||+|.||++++.
T Consensus 206 ~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~ 245 (695)
T PRK13802 206 ADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVAT 245 (695)
T ss_pred hhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhC
Confidence 6666678899999999999999999999999999998875
No 150
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.44 E-value=1.5e-05 Score=79.63 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=104.3
Q ss_pred CChhhHHHHHHHHHcCCeEE-ecCCC--C---CCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC
Q 018919 86 HPEGEYATARAASAAGTIMT-LSSWS--T---SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 86 ~~~~~~~la~aa~~~G~~~~-~~~~~--~---~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~ 159 (349)
+++....+++.+-+.|+..+ ++.-. . ..++++.+..+...++.-....+. -...++.+.++|++++.++...
T Consensus 14 ~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~--g~~~v~~a~~aGAdgV~v~g~~ 91 (430)
T PRK07028 14 ELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT--GAIEVEMAAKAGADIVCILGLA 91 (430)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc--hHHHHHHHHHcCCCEEEEecCC
Confidence 44455678888888887654 22100 1 122333433333333211111111 1236778889999997754211
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cC-HHHHHHHHHcCCCEEEEecCCC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHGA 236 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~-~~~a~~a~~~G~d~I~v~~~gg 236 (349)
+ +....+.++.+++ .++++++..+ .+ .+.++.+.+.|+|+|.+.. |.
T Consensus 92 ~----------------------------~~~~~~~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~ 141 (430)
T PRK07028 92 D----------------------------DSTIEDAVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHV-GI 141 (430)
T ss_pred C----------------------------hHHHHHHHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-cc
Confidence 0 0001234566665 5888876422 23 4667888999999997752 22
Q ss_pred CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 237 RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 237 ~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.....++..++.++++++.+ ++||++.||| +.+.+.++++.||++|.+||.++.
T Consensus 142 ~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 142 DQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred chhhcCCChHHHHHHHHhhC--CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcC
Confidence 11112233456777777665 5999999999 679999999999999999999864
No 151
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.44 E-value=2.4e-05 Score=71.23 Aligned_cols=196 Identities=13% Similarity=0.155 Sum_probs=113.1
Q ss_pred ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC---C-C--CCHHHHHhhCC-CceEEEEee---
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---S-T--SSVEEVASTGP-GIRFFQLYV--- 131 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---~-~--~~~e~i~~~~~-~~~~~Ql~~--- 131 (349)
..++.|++|++.+++..=.+ .+ ...+.++....|+-.+.-.. . . ..-+.+.+..+ .. +.+.+
T Consensus 7 ~l~i~g~~f~SRL~lGTgky---~s---~~~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~~~--~~~LPNTa 78 (267)
T CHL00162 7 KLKIGNKSFNSRLMLGTGKY---KS---LKDAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDWNK--LWLLPNTA 78 (267)
T ss_pred ceEECCEEeecceEEecCCC---CC---HHHHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhchhc--cEECCcCc
Confidence 57899999999999876322 12 23577778888877553111 1 0 01122222222 11 12222
Q ss_pred -cCChhHHHHHHHHHHHcC-------CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc
Q 018919 132 -YKDRNVVAQLVRRAERAG-------FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT 203 (349)
Q Consensus 132 -~~~~~~~~~~~~~~~~~G-------~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~ 203 (349)
..+.+.-...++.+++.+ -++|-+-+=.- ..+. -|+..+.++..+...
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D----------~~~L--------------lPD~~etl~Aae~Lv 134 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISD----------PKYL--------------LPDPIGTLKAAEFLV 134 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCC----------Cccc--------------CCChHHHHHHHHHHH
Confidence 233343344444445543 45554333110 0011 122234444433332
Q ss_pred --CCcEEEEEecCHHHHHHHHHcCCCEEEEecCC-CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh
Q 018919 204 --KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 280 (349)
Q Consensus 204 --~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~ 280 (349)
+.-|+.=...++-.|+++.++||..|.--+.. |+ .-|..+...|..+.+.. ++||+.++||.+++|+.+++++
T Consensus 135 ~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 135 KKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred HCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHc
Confidence 33343333467888999999999998753321 11 12344556666666654 7999999999999999999999
Q ss_pred CCCEEEEchHHHH
Q 018919 281 GASGIFIGRPVVY 293 (349)
Q Consensus 281 GA~~V~ig~~~l~ 293 (349)
|||+|++.|++..
T Consensus 211 GaDgVL~nSaIak 223 (267)
T CHL00162 211 GASGVLLNTAVAQ 223 (267)
T ss_pred CCCEEeecceeec
Confidence 9999999998874
No 152
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.43 E-value=2.4e-06 Score=81.43 Aligned_cols=128 Identities=20% Similarity=0.306 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh-cCCcEEEEE-ecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI-TKLPILVKG-VLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~pv~vK~-v~~~~ 216 (349)
.+.++..++.|+.+|-+-.|....+.. .++++.+|+. +++||+.|. +.++.
T Consensus 142 ~~iA~~Ye~~GA~aISVLTd~~~F~Gs---------------------------~e~L~~vr~~~v~lPvLrKDFIID~y 194 (338)
T PLN02460 142 VEIAQAYEKGGAACLSVLTDEKYFQGS---------------------------FENLEAIRNAGVKCPLLCKEFIVDAW 194 (338)
T ss_pred HHHHHHHHhCCCcEEEEecCcCcCCCC---------------------------HHHHHHHHHcCCCCCEeeccccCCHH
Confidence 466777788899998765543221100 4667777776 778888887 35666
Q ss_pred HHHHHHHcCCCEEEEecC-----------------C--------------------C--------CCCCCchhhHHHHHH
Q 018919 217 DARIAVQAGAAGIIVSNH-----------------G--------------------A--------RQLDYVPATIMALEE 251 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~-----------------g--------------------g--------~~~~~~~~~~~~l~~ 251 (349)
....+..+|||+|.+.-. | | |.+.+-...++...+
T Consensus 195 QI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~ 274 (338)
T PLN02460 195 QIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKK 274 (338)
T ss_pred HHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHH
Confidence 666666666666654310 0 0 111111112333334
Q ss_pred HHH-----Hh-cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 252 VVK-----AT-QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 252 i~~-----~~-~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.. .+ +.++.+++.+||++++|+..+..+|||+|.||..++.
T Consensus 275 L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr 322 (338)
T PLN02460 275 LLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVK 322 (338)
T ss_pred HhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 443 23 2356789999999999999999999999999999986
No 153
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.42 E-value=4.5e-05 Score=72.19 Aligned_cols=195 Identities=18% Similarity=0.220 Sum_probs=115.1
Q ss_pred ceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEe---cCCC--CCCHHHHHhhCC-CceEEEEee----
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL---SSWS--TSSVEEVASTGP-GIRFFQLYV---- 131 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~---~~~~--~~~~e~i~~~~~-~~~~~Ql~~---- 131 (349)
...+.|++|++.+++..=-+ .+ ...+.++....|+-.+. .-.. ....+.+.+..+ .. +.+.+
T Consensus 74 ~~~i~~~~~~sRl~~Gtg~y---~s---~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~--~~~lpNTag 145 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGTGKY---KD---FEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKK--YTYLPNTAG 145 (326)
T ss_pred CeEECCEEEecceeEecCCC---CC---HHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcC--CEECccCCC
Confidence 57889999999999876222 12 23577788888877652 1111 111122222222 11 12222
Q ss_pred cCChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEE
Q 018919 132 YKDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPIL 208 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~ 208 (349)
..+.+.-...++.++++ |-++|-+-+=... .+ .-|+..+.++..+... +.-++
T Consensus 146 ~~ta~eAv~~a~lare~~~~~~iKlEvi~e~----------~~--------------llpd~~~~v~aa~~L~~~Gf~v~ 201 (326)
T PRK11840 146 CYTAEEAVRTLRLAREAGGWDLVKLEVLGDA----------KT--------------LYPDMVETLKATEILVKEGFQVM 201 (326)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcCCC----------CC--------------cccCHHHHHHHHHHHHHCCCEEE
Confidence 23444444555556665 6677655442110 01 1122234455554432 44443
Q ss_pred EEEecCHHHHHHHHHcCCCEEEE-ec-CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 209 VKGVLTAEDARIAVQAGAAGIIV-SN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~v-~~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
+=...++..++++.++|+-+|-- .. -|. .-|....+.+..+.+.. ++||+.++||.+++|+.+++++|||+|.
T Consensus 202 ~yc~~d~~~a~~l~~~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL 276 (326)
T PRK11840 202 VYCSDDPIAAKRLEDAGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVL 276 (326)
T ss_pred EEeCCCHHHHHHHHhcCCEEEeeccccccC---CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 33357899999999999954432 11 111 01233566777777764 7999999999999999999999999999
Q ss_pred EchHHHH
Q 018919 287 IGRPVVY 293 (349)
Q Consensus 287 ig~~~l~ 293 (349)
+.|++..
T Consensus 277 ~nSaIa~ 283 (326)
T PRK11840 277 MNTAIAE 283 (326)
T ss_pred Ecceecc
Confidence 9998863
No 154
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.41 E-value=3.6e-06 Score=84.00 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecC--CC---------------------------------
Q 018919 193 DEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--GA--------------------------------- 236 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~--gg--------------------------------- 236 (349)
+++++.+|+.+++||+.|.. .++.+...+..+|||+|.+.-. +.
T Consensus 99 ~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~ 178 (454)
T PRK09427 99 FDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL 178 (454)
T ss_pred HHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhC
Confidence 46677777777778877774 5666667777777777665310 00
Q ss_pred ---------CCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHH
Q 018919 237 ---------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 307 (349)
Q Consensus 237 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l 307 (349)
|.+.+-.-.+....++...++.++.+|+.+||++++|+.++ ..|||+|.||+.++.+ +...+.+
T Consensus 179 ~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~------~d~~~~~ 251 (454)
T PRK09427 179 GAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAE------DDLELAV 251 (454)
T ss_pred CCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCC------CCHHHHH
Confidence 11111112334445556666667889999999999999875 5589999999999863 2222333
Q ss_pred HHHHHHHHHHHHHcCCCChhhhc
Q 018919 308 EMLREEFELAMALSGCRSLKEIT 330 (349)
Q Consensus 308 ~~l~~el~~~m~~~G~~~i~~l~ 330 (349)
..+.. ...+.||.++.+|+.
T Consensus 252 ~~L~~---~~vKICGit~~eda~ 271 (454)
T PRK09427 252 RKLIL---GENKVCGLTRPQDAK 271 (454)
T ss_pred HHHhc---cccccCCCCCHHHHH
Confidence 33322 345789999888775
No 155
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.41 E-value=5.8e-06 Score=75.10 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 244 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 244 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+.++.+.++.+.+ ++||+++|||++.+|+.++..+||++|.+|++++.+
T Consensus 171 ~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 171 PNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 3567788887766 799999999999999999888999999999999753
No 156
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.40 E-value=2.1e-06 Score=83.38 Aligned_cols=95 Identities=21% Similarity=0.330 Sum_probs=71.6
Q ss_pred CCch-HHHHHHHHHhcCCcEEEEEecC----HHHHHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcE
Q 018919 189 LGKM-DEDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPV 262 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~~~pv~vK~v~~----~~~a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipv 262 (349)
++++ .+.++++++. . +.+|...+ .+.++.++++|+|.|++++.-..|.+ ++...+..+.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a-~--VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDS-G--VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhc-c--eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 5666 6778999885 2 77888654 37789999999999999643211222 2223455677777766 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 263 FLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 263 ia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
|+ |+|.+.+|+.+++.+|||+|++|+
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 98 999999999999999999999885
No 157
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.40 E-value=7.5e-06 Score=72.76 Aligned_cols=115 Identities=27% Similarity=0.284 Sum_probs=82.4
Q ss_pred EeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcE
Q 018919 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPI 207 (349)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv 207 (349)
+....+.+...+.++.+.+.|...++||+++|. ..+.|+.+++++ ++-|
T Consensus 13 Vir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~------------------------------a~~~I~~l~~~~p~~~v 62 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALIEGGIRAIEITLRTPN------------------------------ALEAIEALRKEFPDLLV 62 (196)
T ss_dssp EETTSSGGGHHHHHHHHHHTT--EEEEETTSTT------------------------------HHHHHHHHHHHHTTSEE
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEecCCcc------------------------------HHHHHHHHHHHCCCCee
Confidence 444567888889999999999999999997652 146688888877 5667
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+..+.+.++++.+.++|+++++--+. +-+.+....+. ++|++ -|+.|+.++.+|+.+||+.|=+
T Consensus 63 GAGTV~~~e~a~~a~~aGA~FivSP~~----------~~~v~~~~~~~---~i~~i--PG~~TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 63 GAGTVLTAEQAEAAIAAGAQFIVSPGF----------DPEVIEYAREY---GIPYI--PGVMTPTEIMQALEAGADIVKL 127 (196)
T ss_dssp EEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEE--EEESSHHHHHHHHHTT-SEEEE
T ss_pred EEEeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHHc---CCccc--CCcCCHHHHHHHHHCCCCEEEE
Confidence 888889999999999999999965211 12333333322 57666 7899999999999999999976
Q ss_pred c
Q 018919 288 G 288 (349)
Q Consensus 288 g 288 (349)
=
T Consensus 128 F 128 (196)
T PF01081_consen 128 F 128 (196)
T ss_dssp T
T ss_pred e
Confidence 3
No 158
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=98.40 E-value=8.5e-05 Score=66.98 Aligned_cols=173 Identities=18% Similarity=0.131 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHcCCeEEecCCCC------CCH----HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 89 GEYATARAASAAGTIMTLSSWST------SSV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 89 ~~~~la~aa~~~G~~~~~~~~~~------~~~----e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
++..-.+.+.+.|..-.++|.-+ .+. +++.+..+++..+|++. .+.+.+.+.++++.+..- -+.+-+.
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~~-~~~~~mi~~a~~l~~~~~-~i~iKIP 85 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETIS-LDAEGMVEEAKELAKLAP-NIVVKIP 85 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEee-CCHHHHHHHHHHHHHhCC-CeEEEeC
Confidence 35556666777776655555411 122 33444445678889975 577777777777777653 3555553
Q ss_pred CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ 238 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~ 238 (349)
+... | .+.++.+++. ++++.+-.+.+.+.|..|.++|++.|.. .=||-
T Consensus 86 ~T~~---------------G--------------l~A~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi 133 (213)
T TIGR00875 86 MTSE---------------G--------------LKAVKILKKE-GIKTNVTLVFSAAQALLAAKAGATYVSP--FVGRL 133 (213)
T ss_pred CCHH---------------H--------------HHHHHHHHHC-CCceeEEEecCHHHHHHHHHcCCCEEEe--ecchH
Confidence 3210 0 3557777654 8999998899999999999999998865 33443
Q ss_pred CCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 239 LDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 239 ~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+.|...+..+.++.+.+ +.+..|++.+ +|+..++.+++.+|||.|-+.-.++..+.
T Consensus 134 ~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~ 193 (213)
T TIGR00875 134 DDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRHPRHVLEAALIGADIATMPLDVMQQLF 193 (213)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 333444566666666554 2356766655 99999999999999999999999988764
No 159
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.38 E-value=1.4e-05 Score=73.03 Aligned_cols=101 Identities=26% Similarity=0.295 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecC--------------CC----------C-CCC-----C
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH--------------GA----------R-QLD-----Y 241 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~--------------gg----------~-~~~-----~ 241 (349)
.+.++++.+..++||++.+ +.+.++++.+.+.|++.+++... |. . ..+ .
T Consensus 62 ~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~ 141 (228)
T PRK04128 62 LDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEES 141 (228)
T ss_pred HHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcC
Confidence 5778888888899998765 78999999999999999988521 11 0 000 1
Q ss_pred chhhHHHHHHH------------------------HHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 242 VPATIMALEEV------------------------VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 242 ~~~~~~~l~~i------------------------~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+....+.+.++ .+.. .++|||++|||++.+|+.++..+|+++|.+|++|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 142 SIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 11112222222 2221 2689999999999999999999999999999999863
No 160
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.37 E-value=8.9e-06 Score=72.94 Aligned_cols=122 Identities=26% Similarity=0.291 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC-CcEEEEEe-
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK-LPILVKGV- 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~-~pv~vK~v- 212 (349)
+.....++.+.+.|++.+.+.++... + .. .+.+. .+++.++++..+ +|+ |.+
T Consensus 69 ~~k~~eve~A~~~GAdevdvv~~~g~-----------~--~~----------~~~~~~~~ei~~v~~~~~g~~l--kvI~ 123 (203)
T cd00959 69 EVKVAEAREAIADGADEIDMVINIGA-----------L--KS----------GDYEAVYEEIAAVVEACGGAPL--KVIL 123 (203)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecHHH-----------H--hC----------CCHHHHHHHHHHHHHhcCCCeE--EEEE
Confidence 34445577888899999988776410 0 00 01122 567888888764 554 333
Q ss_pred ----cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 213 ----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 213 ----~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
.+.+. ++.+.++|+|+|..+ +|.. ....+.+.+..+.+.++.++||-++|||++.+++++++.+||+.
T Consensus 124 e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~---~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 124 ETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG---PGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC---CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhh
Confidence 34333 677999999999997 2221 22344555555555554579999999999999999999999987
Q ss_pred EE
Q 018919 285 IF 286 (349)
Q Consensus 285 V~ 286 (349)
+.
T Consensus 200 iG 201 (203)
T cd00959 200 IG 201 (203)
T ss_pred cc
Confidence 64
No 161
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=1.3e-05 Score=71.25 Aligned_cols=152 Identities=19% Similarity=0.206 Sum_probs=104.9
Q ss_pred cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcC---CCCcC--ccccc-----CC---CCCCchHHHHHH
Q 018919 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT---LPPFL--TLKNF-----QG---LDLGKMDEDVKW 198 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~---~p~~~--~~~~~-----~~---~~~~~~~~~i~~ 198 (349)
..+.+....+++.+.+.|.++|+||+++|....-.+.+++.+. +..|- +.... .| .++|.+-..+-+
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~ 100 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAK 100 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 3678888899999999999999999999987666666666553 00000 00000 01 456777344444
Q ss_pred HHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 018919 199 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 278 (349)
Q Consensus 199 i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal 278 (349)
.....++|++ -++.|+.++..|+++|++.+.++-... .+|+.- +..+.--+ .+++++..|||.. ..+..++
T Consensus 101 ~a~~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~~---~ka~~gP~-~~v~~~pTGGVs~-~N~~~yl 171 (211)
T COG0800 101 AANRYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGPAM---LKALAGPF-PQVRFCPTGGVSL-DNAADYL 171 (211)
T ss_pred HHHhCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcHHH---HHHHcCCC-CCCeEeecCCCCH-HHHHHHH
Confidence 4455689987 478999999999999999999974321 123322 22111111 3699999999987 5999999
Q ss_pred HhCCCEEEEchHHH
Q 018919 279 ALGASGIFIGRPVV 292 (349)
Q Consensus 279 ~~GA~~V~ig~~~l 292 (349)
++|+.+|.+|+-+.
T Consensus 172 a~gv~avG~Gs~l~ 185 (211)
T COG0800 172 AAGVVAVGLGSWLV 185 (211)
T ss_pred hCCceEEecCcccc
Confidence 99999999998665
No 162
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.32 E-value=2.4e-05 Score=70.55 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=89.1
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-C
Q 018919 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-K 204 (349)
Q Consensus 126 ~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~ 204 (349)
.+-+....+.+...+.++.+.+.|++.++++++.|.. .+.|+.+++++ +
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~------------------------------~~~I~~l~~~~p~ 66 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAA------------------------------LEAIRLIAKEVPE 66 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccH------------------------------HHHHHHHHHHCCC
Confidence 3444555788888899999999999999999876421 35688888877 4
Q ss_pred CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 205 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 205 ~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
+-|.+..+.+.++++.+.++|+++++.-+. . .+.+....+ . .+|++ -|+.|+.++.+++.+||+.
T Consensus 67 ~~IGAGTVl~~~~a~~a~~aGA~FivsP~~-------~---~~vi~~a~~-~--~i~~i--PG~~TptEi~~a~~~Ga~~ 131 (212)
T PRK05718 67 ALIGAGTVLNPEQLAQAIEAGAQFIVSPGL-------T---PPLLKAAQE-G--PIPLI--PGVSTPSELMLGMELGLRT 131 (212)
T ss_pred CEEEEeeccCHHHHHHHHHcCCCEEECCCC-------C---HHHHHHHHH-c--CCCEe--CCCCCHHHHHHHHHCCCCE
Confidence 667888889999999999999999976321 1 133333332 1 45555 7899999999999999999
Q ss_pred EEE
Q 018919 285 IFI 287 (349)
Q Consensus 285 V~i 287 (349)
|-+
T Consensus 132 vKl 134 (212)
T PRK05718 132 FKF 134 (212)
T ss_pred EEE
Confidence 877
No 163
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.32 E-value=4.6e-05 Score=69.58 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=108.5
Q ss_pred HHHHHHHHcCCeEE-ecCC----CC---C---CHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC-
Q 018919 92 ATARAASAAGTIMT-LSSW----ST---S---SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT- 159 (349)
Q Consensus 92 ~la~aa~~~G~~~~-~~~~----~~---~---~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~- 159 (349)
...+.+.+.|+..+ +-.+ .+ . ..+.+++....+.-+.|.. .+++ +.++.+.+.|++.+.+|+..
T Consensus 24 ~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv-~~p~---d~~~~~~~~gad~v~vH~~q~ 99 (229)
T PLN02334 24 EEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMV-TNPE---DYVPDFAKAGASIFTFHIEQA 99 (229)
T ss_pred HHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEecc-CCHH---HHHHHHHHcCCCEEEEeeccc
Confidence 46677778887654 2211 11 1 1233333311222344443 3444 34566688899999888861
Q ss_pred CCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec-C-HHHHHHHHHcC-CCEEEEec-CC
Q 018919 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL-T-AEDARIAVQAG-AAGIIVSN-HG 235 (349)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~-~-~~~a~~a~~~G-~d~I~v~~-~g 235 (349)
.. ....+.++++++. +.-+.+-... + .+.++...+.| +|.|.+.. +.
T Consensus 100 ~~----------------------------d~~~~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~p 150 (229)
T PLN02334 100 ST----------------------------IHLHRLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEP 150 (229)
T ss_pred cc----------------------------hhHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEec
Confidence 10 0013567777653 4433322221 3 44555555664 99996643 22
Q ss_pred CC-CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 236 AR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 236 g~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
+. .....+..++.+.++++.. .++||.++||| +.+++.+.+++|||.+.+||+++. .+.....++.+++++
T Consensus 151 g~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~------~~d~~~~~~~l~~~~ 222 (229)
T PLN02334 151 GFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFG------APDYAEVISGLRASV 222 (229)
T ss_pred CCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhC------CCCHHHHHHHHHHHH
Confidence 22 1123345567777776654 25799999999 689999999999999999999753 223445566666666
Q ss_pred HHHH
Q 018919 315 ELAM 318 (349)
Q Consensus 315 ~~~m 318 (349)
+..|
T Consensus 223 ~~~~ 226 (229)
T PLN02334 223 EKAA 226 (229)
T ss_pred HHhh
Confidence 6554
No 164
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.30 E-value=3.9e-05 Score=70.15 Aligned_cols=124 Identities=26% Similarity=0.378 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHH---HhcCCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQ---TITKLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~---~~~~~pv~vK 210 (349)
+.......++++.+.|++++.+.+..... . ....++.+++++ +.+++|+++=
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~--~-----------------------~~~~~~~i~~v~~~~~~~g~~~iie 128 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSE--E-----------------------EREMLEELARVAAEAHKYGLPLIAW 128 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCc--h-----------------------HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 33444556788889999998554432100 0 001133444444 4578999873
Q ss_pred Eec---------CHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCC--CCHHH--
Q 018919 211 GVL---------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGTD-- 273 (349)
Q Consensus 211 ~v~---------~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI--~~~~d-- 273 (349)
... +.+. ++.+.++|+|+|.++..+ .++.+.++.+.. .+||++.||| .+.+|
T Consensus 129 ~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l 197 (235)
T cd00958 129 MYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFL 197 (235)
T ss_pred EeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHH
Confidence 322 2333 556889999999995322 356677777765 6899999998 66766
Q ss_pred --HHHHHHhCCCEEEEchHHHH
Q 018919 274 --VFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 274 --v~kal~~GA~~V~ig~~~l~ 293 (349)
+.+++.+||++|.+||.++.
T Consensus 198 ~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 198 KMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred HHHHHHHHcCCcEEEechhhhc
Confidence 77788999999999999874
No 165
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.29 E-value=6.4e-06 Score=75.78 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.++|+|.+.+.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 3678889999999998875432 1123455788888888877 69999999999999999999999999999998874
No 166
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.28 E-value=2.7e-05 Score=71.78 Aligned_cols=99 Identities=18% Similarity=0.075 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecC---------------CCC--------------C----
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GAR--------------Q---- 238 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~---------------gg~--------------~---- 238 (349)
.+.++++.+.+.+|+.+.+ +.+.++++.+.+.|+|.|++... |.+ .
T Consensus 63 ~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~ 142 (243)
T TIGR01919 63 EMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNR 142 (243)
T ss_pred HHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECC
Confidence 5678888888889987765 78999999999999999988521 110 0
Q ss_pred -C-----------------------------CC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH---HhCCC
Q 018919 239 -L-----------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGAS 283 (349)
Q Consensus 239 -~-----------------------------~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal---~~GA~ 283 (349)
+ ++ .-+.++.+.++++.. ++|||++|||++.+|+.+.- ..|++
T Consensus 143 Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv~ 220 (243)
T TIGR01919 143 GWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGVS 220 (243)
T ss_pred CeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCee
Confidence 0 00 112445555655554 79999999999999998763 35999
Q ss_pred EEEEchHHHH
Q 018919 284 GIFIGRPVVY 293 (349)
Q Consensus 284 ~V~ig~~~l~ 293 (349)
+|.+|++++.
T Consensus 221 gvivg~Al~~ 230 (243)
T TIGR01919 221 VAIGGKLLYA 230 (243)
T ss_pred EEEEhHHHHc
Confidence 9999999875
No 167
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.27 E-value=3.4e-05 Score=72.16 Aligned_cols=120 Identities=26% Similarity=0.380 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHH---HHHHHHHhcCCcEEEEE---
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE---DVKWLQTITKLPILVKG--- 211 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~---~i~~i~~~~~~pv~vK~--- 211 (349)
....++++.+.|++++.+.+..-.. .+ ....+ .+.++.+.+++|+++-.
T Consensus 95 ~~~~ve~A~~~Gad~v~~~~~~g~~--~~-----------------------~~~~~~~~~v~~~~~~~g~pl~vi~~~~ 149 (267)
T PRK07226 95 LVGTVEEAIKLGADAVSVHVNVGSE--TE-----------------------AEMLEDLGEVAEECEEWGMPLLAMMYPR 149 (267)
T ss_pred eeecHHHHHHcCCCEEEEEEecCCh--hH-----------------------HHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 3456778889999998876643110 00 01123 34444555789987731
Q ss_pred ---e---cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC--CHHHHHHHH-
Q 018919 212 ---V---LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFKAL- 278 (349)
Q Consensus 212 ---v---~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~--~~~dv~kal- 278 (349)
+ .+.+. ++.+.++|+|+|..+-.| ..+.+.++.+.. ++||++.|||+ +.+++++.+
T Consensus 150 g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV~a~GGi~~~~~~~~l~~v~ 218 (267)
T PRK07226 150 GPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVPVVIAGGPKTDTDREFLEMVR 218 (267)
T ss_pred CCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHH
Confidence 1 23333 677889999999886221 245666666544 79999999999 777777665
Q ss_pred ---HhCCCEEEEchHHHH
Q 018919 279 ---ALGASGIFIGRPVVY 293 (349)
Q Consensus 279 ---~~GA~~V~ig~~~l~ 293 (349)
++||+++.+|+.++.
T Consensus 219 ~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 219 DAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred HHHHcCCcEEehhhhhhc
Confidence 899999999999874
No 168
>PLN02411 12-oxophytodienoate reductase
Probab=98.27 E-value=2.7e-05 Score=76.63 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCC-CCCC-ch-HHHHHHHHHhcCC-cEEEEEe
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQG-LDLG-KM-DEDVKWLQTITKL-PILVKGV 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~-~~~~-~~-~~~i~~i~~~~~~-pv~vK~v 212 (349)
.+.+++++++|+|+|+||... |+ +-++|..|. ...+ ...| +.++ .| .+.|+.+|+.++- .|.+|+.
T Consensus 168 ~~AA~rA~~AGFDGVEIH~Ah---GY----Ll~QFLSp~-tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS 239 (391)
T PLN02411 168 RQAALNAIRAGFDGIEIHGAH---GY----LIDQFLKDG-INDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVS 239 (391)
T ss_pred HHHHHHHHHcCCCEEEEcccc---ch----HHHHhCCCc-cCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 345667788999999998643 22 233443331 0111 0111 1122 34 6889999999842 4777775
Q ss_pred cC---------------HHHHHHHHHc------CCCEEEEecCCCC---CCC---Cchh--hHHHHHHHHHHhcCCCcEE
Q 018919 213 LT---------------AEDARIAVQA------GAAGIIVSNHGAR---QLD---YVPA--TIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 213 ~~---------------~~~a~~a~~~------G~d~I~v~~~gg~---~~~---~~~~--~~~~l~~i~~~~~~~ipvi 263 (349)
.. .+.++.+.+. |+|+|.|+..... +.. .++. ......++++.+ ++|||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v--~~pvi 317 (391)
T PLN02411 240 PAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY--QGTFM 317 (391)
T ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc--CCCEE
Confidence 31 1123444432 5999999853110 000 1111 113345666666 68999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 264 LDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
+.||| +.+++.++|+.| ||.|.+||+++.
T Consensus 318 ~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 318 CSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred EECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 99999 578999999988 999999999985
No 169
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.25 E-value=4.6e-05 Score=67.60 Aligned_cols=121 Identities=34% Similarity=0.443 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL 213 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~ 213 (349)
|.+.....++.++..|++.+.|-.|. +.++.+++.+++||.|-. .
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAadp----------------------------------~LV~~~~~~s~lPICVSa-V 69 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAADP----------------------------------ELVKLAKSLSNLPICVSA-V 69 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCCH----------------------------------HHHHHHHHhCCCCeEeec-C
Confidence 56667777888888899988764431 456667777788887643 3
Q ss_pred CHHHHHHHHHcCCCEEEEecC------CCC--------------C----------------C------------------
Q 018919 214 TAEDARIAVQAGAAGIIVSNH------GAR--------------Q----------------L------------------ 239 (349)
Q Consensus 214 ~~~~a~~a~~~G~d~I~v~~~------gg~--------------~----------------~------------------ 239 (349)
.++....|.++|||.|-+.|. |.+ . +
T Consensus 70 ep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiI 149 (242)
T PF04481_consen 70 EPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADII 149 (242)
T ss_pred CHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEE
Confidence 567777777788887777763 221 0 0
Q ss_pred --CC-----------------chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 240 --DY-----------------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 240 --~~-----------------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+ .-|++....++.+++ ++||++..|+.. -.+=-|+++||++|+||+++-
T Consensus 150 QTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSavn 218 (242)
T PF04481_consen 150 QTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSA-VTAPMAIAAGASGVGVGSAVN 218 (242)
T ss_pred EcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcch-hhHHHHHHcCCcccchhHHhh
Confidence 01 123455555666665 899999999987 455679999999999999874
No 170
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.24 E-value=1.1e-05 Score=74.76 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.++.+.+.|++.+.+.+....+ ...+..++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 377888999999999997643321 23466789999998877 79999999999999999999999999999998864
No 171
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.24 E-value=4.2e-05 Score=81.50 Aligned_cols=139 Identities=28% Similarity=0.258 Sum_probs=100.5
Q ss_pred HHHHHHHHHh----c-CCcEEEEEecCH---HHHHHHHHcCCCEEEEecC-CCCC---CC----CchhhHHH-HHHHHHH
Q 018919 193 DEDVKWLQTI----T-KLPILVKGVLTA---EDARIAVQAGAAGIIVSNH-GARQ---LD----YVPATIMA-LEEVVKA 255 (349)
Q Consensus 193 ~~~i~~i~~~----~-~~pv~vK~v~~~---~~a~~a~~~G~d~I~v~~~-gg~~---~~----~~~~~~~~-l~~i~~~ 255 (349)
.++++++.-- - ...|.||.+.-. -.|.-.++..||.|.||+| ||+. +. .|. +|+. |.|..+.
T Consensus 1082 IEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGl-PWELGlAEThQt 1160 (2142)
T KOG0399|consen 1082 IEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGL-PWELGLAETHQT 1160 (2142)
T ss_pred HHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCC-ChhhcchhhhhH
Confidence 5666665422 2 356899998532 2245567788999999998 5542 11 111 1221 3333332
Q ss_pred -----hcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh--------------------------cC-HHHH
Q 018919 256 -----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA--------------------------EG-EKGV 303 (349)
Q Consensus 256 -----~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~--------------------------~G-~~gv 303 (349)
++.++-+-.||+++||.||+-|-.+||+-..+++.-+.+++| .| ++.|
T Consensus 1161 Lv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Pehv 1240 (2142)
T KOG0399|consen 1161 LVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHV 1240 (2142)
T ss_pred HhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHH
Confidence 355788999999999999999999999999999987777654 13 3568
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 304 RRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 304 ~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+++-.+.+|++..|..+|++++.|+-+.
T Consensus 1241 VNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1241 VNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 89999999999999999999999999644
No 172
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.24 E-value=1.7e-05 Score=71.10 Aligned_cols=93 Identities=24% Similarity=0.300 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCcEEEEEe-----cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEE
Q 018919 193 DEDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v-----~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 263 (349)
.++|+.+++..+-++.+|.+ ++.++ .+.+.++|+|+|..|... ..+..+.+.+.-+++.+++++-|=
T Consensus 112 ~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf----~~~gAT~edv~lM~~~vg~~vgvK 187 (228)
T COG0274 112 EREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGF----SAGGATVEDVKLMKETVGGRVGVK 187 (228)
T ss_pred HHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhccCceee
Confidence 57799999988766778886 23332 456889999999987531 244556777777777777789999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 264 LDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 264 a~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++||||+.+|+.+++.+||.-++..+
T Consensus 188 aSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 188 ASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred ccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 99999999999999999976654443
No 173
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=98.23 E-value=0.00018 Score=64.87 Aligned_cols=149 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHH
Q 018919 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (349)
Q Consensus 115 e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~ 194 (349)
.++.+..+++..+|++. .|.+.+.+.++.+.+.+ +.+.+-+.+.. .-.+
T Consensus 44 ~~i~~~~~~~v~~qv~~-~~~e~~i~~a~~l~~~~-~~~~iKIP~T~-----------------------------~gl~ 92 (211)
T cd00956 44 KEICEIIDGPVSAQVVS-TDAEGMVAEARKLASLG-GNVVVKIPVTE-----------------------------DGLK 92 (211)
T ss_pred HHHHHhcCCCEEEEEEe-CCHHHHHHHHHHHHHhC-CCEEEEEcCcH-----------------------------hHHH
Confidence 34444445678889875 67777777777776652 23444442210 0046
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC-C-CcEEEecCCCCHH
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-R-IPVFLDGGVRRGT 272 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~-ipvia~GGI~~~~ 272 (349)
.++.+++. ++++.+..+.+.+.|..|.++|+++|.. +-||--+.|...+..+.++.+.+.. + -.-+...|++++.
T Consensus 93 ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ 169 (211)
T cd00956 93 AIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQ 169 (211)
T ss_pred HHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHH
Confidence 67777765 8999999999999999999999999544 4454334444556666666665532 2 2234445699999
Q ss_pred HHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 273 DVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
++..++.+||+.|-+.-.++..+..
T Consensus 170 ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 170 HVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred HHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 9999999999999999998876643
No 174
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.22 E-value=1.5e-05 Score=74.03 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=64.3
Q ss_pred CH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 214 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 214 ~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++ +.|+...+.|+|.+.+.+.-+- .......++.+.++++.+ ++||+++|||++.+|+.+++.+||+.|++|++++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 6788889999999999764321 124456788899998887 7999999999999999999999999999999886
Q ss_pred H
Q 018919 293 Y 293 (349)
Q Consensus 293 ~ 293 (349)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 4
No 175
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.22 E-value=7.2e-06 Score=79.83 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=69.9
Q ss_pred CCch-HHHHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEE
Q 018919 189 LGKM-DEDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFL 264 (349)
Q Consensus 189 ~~~~-~~~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia 264 (349)
++++ .+.++.+++. ++++.++.. ...+.++.+.++|+|.|+++++...+.+.+.. .+..+.++.+.. ++|||+
T Consensus 116 ~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa 192 (368)
T PRK08649 116 KPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV 192 (368)
T ss_pred CHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE
Confidence 5666 6778998885 555544442 23477899999999999995322122233322 345556666655 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
|+|.+.+++.+++.+|||+|++|+
T Consensus 193 -G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 193 -GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred -eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999996
No 176
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.21 E-value=2.8e-05 Score=71.89 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHH
Q 018919 139 AQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~ 217 (349)
.+.+++.++.|++.+ .|++|.. ++...+.++++++ +++||-+.+-...++
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdgg----------------------------~~~n~~~i~~i~~-~~~~vqvGGGIR~e~ 96 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGAD----------------------------DASLAAALEALRA-YPGGLQVGGGVNSEN 96 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC----------------------------CcccHHHHHHHHh-CCCCEEEeCCccHHH
Confidence 567888899999998 5566541 1111467888887 778887776433488
Q ss_pred HHHHHHcCCCEEEEec----C---------------C--------------C--C-------C-----------------
Q 018919 218 ARIAVQAGAAGIIVSN----H---------------G--------------A--R-------Q----------------- 238 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~----~---------------g--------------g--~-------~----------------- 238 (349)
++.+.++||+.|++.. . | | + .
T Consensus 97 i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g 176 (262)
T PLN02446 97 AMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAY 176 (262)
T ss_pred HHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhC
Confidence 8888888888888752 0 1 1 0 0
Q ss_pred ----------CCC--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh--CCCEEEEchHHH
Q 018919 239 ----------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPVV 292 (349)
Q Consensus 239 ----------~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~--GA~~V~ig~~~l 292 (349)
.|+ .-+.++.+.++.+.+ ++|||++|||++.+|+.+...+ |..+|.+|++++
T Consensus 177 ~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 177 CDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred CCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHH
Confidence 001 123456666666665 7999999999999999998887 578999999984
No 177
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.21 E-value=4.7e-05 Score=69.69 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 138 VAQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
..+.++...+.|++.+ .+++|... + .+...+.++++.+....|+.+.+ +.+.
T Consensus 32 P~~~a~~~~~~ga~~lhivDLd~a~-~-------------------------~~~n~~~i~~i~~~~~~~v~vGGGIrs~ 85 (232)
T PRK13586 32 PIEIASKLYNEGYTRIHVVDLDAAE-G-------------------------VGNNEMYIKEISKIGFDWIQVGGGIRDI 85 (232)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcC-C-------------------------CcchHHHHHHHHhhCCCCEEEeCCcCCH
Confidence 3467777888999987 55665421 0 01114678888774445888765 6889
Q ss_pred HHHHHHHHcCCCEEEEecC---------------CC-C---CCC------------------------------------
Q 018919 216 EDARIAVQAGAAGIIVSNH---------------GA-R---QLD------------------------------------ 240 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~---------------gg-~---~~~------------------------------------ 240 (349)
++++.+.+.|++.|++... |+ + .+|
T Consensus 86 e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~ 165 (232)
T PRK13586 86 EKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIF 165 (232)
T ss_pred HHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEE
Confidence 9999999999999887521 11 0 000
Q ss_pred ------C--chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 241 ------Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 241 ------~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+ .-+.++.+..+.+. ..|++++|||++.+|+.++..+|+++|.+|++++.
T Consensus 166 tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 166 TYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred ecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 0 01233444444332 34699999999999999999999999999999874
No 178
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.21 E-value=8.5e-05 Score=66.29 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=103.6
Q ss_pred ChhhHHHHHHHHHcCCeEE-ecCCCCCCH---HHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 87 PEGEYATARAASAAGTIMT-LSSWSTSSV---EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~~~~~~~~---e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.-..+++++.+.|+..+ ++-.++..+ +++++..|+ ..+-.-. =.+.+.++++.++|++.++ +|
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~-~~vGAGT----Vl~~e~a~~ai~aGA~Fiv----SP-- 83 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEE-AIVGAGT----ILNAKQFEDAAKAGSRFIV----SP-- 83 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCC-CEEeeEe----CcCHHHHHHHHHcCCCEEE----CC--
Confidence 3334589999999999866 333333333 344444442 1111111 1234567888999999875 22
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY 241 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~ 241 (349)
.+ -+.+++.+ +.++|++- ++.|+.++..|.++|++.|.++-.+ .-+
T Consensus 84 ----------------------------~~~~~vi~~a~-~~~i~~iP-G~~TptEi~~A~~~Ga~~vK~FPa~---~~G 130 (201)
T PRK06015 84 ----------------------------GTTQELLAAAN-DSDVPLLP-GAATPSEVMALREEGYTVLKFFPAE---QAG 130 (201)
T ss_pred ----------------------------CCCHHHHHHHH-HcCCCEeC-CCCCHHHHHHHHHCCCCEEEECCch---hhC
Confidence 12 24455544 56898874 7899999999999999999996421 112
Q ss_pred chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 242 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 242 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
|+ ..++.++.-+ .+++++.+|||.. +++.++|++|+.++..|+.+.
T Consensus 131 G~---~yikal~~pl-p~~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 131 GA---AFLKALSSPL-AGTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred CH---HHHHHHHhhC-CCCcEEecCCCCH-HHHHHHHhCCCeEEEEchhhC
Confidence 33 3444454545 3799999999977 799999999988777777654
No 179
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.20 E-value=1.8e-05 Score=74.00 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecC
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 267 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GG 267 (349)
.+.++++|+..+ .+|.+ .+.+.|+++.++++|+|.|.+.|- +.+.+.++++..+ .++.+.++||
T Consensus 169 ~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGg 237 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGN 237 (273)
T ss_pred HHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECC
Confidence 356888888765 44554 678999999999999999988652 3455666666543 3677999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 268 VRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| +++.+.++..+|+|.+.+|+++.
T Consensus 238 I-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 238 I-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 99999999999999999999775
No 180
>PRK01362 putative translaldolase; Provisional
Probab=98.19 E-value=0.00048 Score=62.14 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=103.3
Q ss_pred HHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHH
Q 018919 116 EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDED 195 (349)
Q Consensus 116 ~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (349)
++.+..+++..+|+.. .|.+.+.+.++++.+.+ +.+.+-+.+.. +| .+.
T Consensus 45 ~i~~~i~g~vs~qv~~-~d~~~m~~~a~~l~~~~-~~i~iKIP~T~---------------~G--------------~~a 93 (214)
T PRK01362 45 EICSIVDGPVSAEVIA-LDAEGMIKEGRELAKIA-PNVVVKIPMTP---------------EG--------------LKA 93 (214)
T ss_pred HHHHhcCCCEEEEEee-CCHHHHHHHHHHHHHhC-CCEEEEeCCCH---------------HH--------------HHH
Confidence 3444445678889874 67777777777777765 34555553321 00 355
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHH
Q 018919 196 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~ 272 (349)
++.+++. ++++-+-.+.+.+.+..|.++|+++|.. .=||--+.+...+..+.++.+.+. .+..|++ ..+|+..
T Consensus 94 ~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~~ 169 (214)
T PRK01362 94 VKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHPM 169 (214)
T ss_pred HHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCHH
Confidence 7777664 8999998899999999999999998876 334433445555666666666552 2454554 4599999
Q ss_pred HHHHHHHhCCCEEEEchHHHHHHh
Q 018919 273 DVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
++.+++.+|||.+-+.-.++..+.
T Consensus 170 ~v~~~~~~G~d~iTi~~~vl~~l~ 193 (214)
T PRK01362 170 HVLEAALAGADIATIPYKVIKQLF 193 (214)
T ss_pred HHHHHHHcCCCEEecCHHHHHHHH
Confidence 999999999999999998887765
No 181
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.18 E-value=0.00014 Score=66.04 Aligned_cols=96 Identities=26% Similarity=0.333 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCC--CC--CCCC-chhhHHH-HHHHHHHhcCCCcEEEecCC
Q 018919 195 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--AR--QLDY-VPATIMA-LEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 195 ~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~g--g~--~~~~-~~~~~~~-l~~i~~~~~~~ipvia~GGI 268 (349)
.++..++ .++.+++ .+.+.++++.+.+.|.|.|.+-+.+ |+ .... .+...+. +..+++. ..++||++.|||
T Consensus 106 ~v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI 182 (223)
T PRK04302 106 VVERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGI 182 (223)
T ss_pred HHHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCC
Confidence 3555544 4765554 4567888888999999988764321 21 1111 1222222 2223322 236899999999
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++++++..+++.|||+|.+|++++.
T Consensus 183 ~~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 183 STGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred CCHHHHHHHHcCCCCEEEEehHHhC
Confidence 9999999999999999999999985
No 182
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.18 E-value=0.00012 Score=65.48 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=36.2
Q ss_pred HHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 247 MALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 247 ~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.+.++++... .++|+++.|||+. +++.+++..|||+|.+||+++.
T Consensus 151 ~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 151 EKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 44445544431 1489999999996 9999999999999999999973
No 183
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.17 E-value=0.0013 Score=61.97 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=73.6
Q ss_pred cCHHHHHHHH-HcCCCEEEEe--c-CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~dv~kal~~GA~~V~ 286 (349)
.++++++.+. +.|+|++-++ + ||-. .+.-+-.++.|.++++.+ ++|+++-| ||.. +++.+++..|++.|-
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~~-e~~~~~i~~G~~kin 228 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGISP-EDFKKCIQHGIRKIN 228 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCCH-HHHHHHHHcCCcEEE
Confidence 4788898887 4699999994 3 4422 112223688999999887 79999999 8765 889999999999999
Q ss_pred EchHHHHHHhh-------cCH-----HHHHHHHHHHHHHHHHHHHHcCC
Q 018919 287 IGRPVVYSLAA-------EGE-----KGVRRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 287 ig~~~l~~~~~-------~G~-----~gv~~~l~~l~~el~~~m~~~G~ 323 (349)
+.|.+..+... ... .-.....+.+++..+..|..+|.
T Consensus 229 v~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs 277 (281)
T PRK06806 229 VATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGS 277 (281)
T ss_pred EhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99988754211 000 11223334555566666666664
No 184
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=98.16 E-value=0.00053 Score=61.57 Aligned_cols=199 Identities=19% Similarity=0.197 Sum_probs=113.4
Q ss_pred CcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCC-----CCCHHHHHhhCCCceEEEEee---
Q 018919 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS-----TSSVEEVASTGPGIRFFQLYV--- 131 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~-----~~~~e~i~~~~~~~~~~Ql~~--- 131 (349)
|...+|.|++|.+-+++..= ...++ .-+.++.+..|.-.+.-... ...-+.+.+... +.-+.+-+
T Consensus 5 ~d~l~i~g~~f~SRLllGTg---ky~s~---~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~-~~~~~~LPNTa 77 (262)
T COG2022 5 DDMLTIAGKTFDSRLLLGTG---KYPSP---AVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLI-PLGVTLLPNTA 77 (262)
T ss_pred ccceeecCeeeeeeEEEecC---CCCCH---HHHHHHHHhcCCceEEEEEEeecccCCCcchHHHHhh-hcCcEeCCCcc
Confidence 34577889999999988652 22223 25777778888775431111 011122222111 11122222
Q ss_pred -cCChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcE
Q 018919 132 -YKDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPI 207 (349)
Q Consensus 132 -~~~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv 207 (349)
.++.+.-...++.++++ +-++|-+.+=.. +.+- -|+..+.++...... +.-|
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d----------~~tL--------------lPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGD----------EKTL--------------LPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecC----------Cccc--------------CCChHHHHHHHHHHHhCCCEE
Confidence 23344444445555554 566664433110 0111 122234444333222 3333
Q ss_pred EEEEecCHHHHHHHHHcCCCEEEEecCC-CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 208 LVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 208 ~vK~v~~~~~a~~a~~~G~d~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
..-...++-.|+++.++||.+|.=-+.. |+ .-|+-+...|.-+.+.. ++|||+|-||.+++|+..++++|+|+|+
T Consensus 134 lPY~~dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL 209 (262)
T COG2022 134 LPYTTDDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVL 209 (262)
T ss_pred eeccCCCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceee
Confidence 3222356788999999999888532110 11 12444566777777776 8999999999999999999999999999
Q ss_pred EchHHHH
Q 018919 287 IGRPVVY 293 (349)
Q Consensus 287 ig~~~l~ 293 (349)
+-+++-.
T Consensus 210 ~NTAiA~ 216 (262)
T COG2022 210 LNTAIAR 216 (262)
T ss_pred hhhHhhc
Confidence 9998754
No 185
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=98.16 E-value=0.00028 Score=64.08 Aligned_cols=150 Identities=22% Similarity=0.262 Sum_probs=97.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-cCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI-TKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~-~~~pv~vK 210 (349)
.|.....+.++++++.|++.+-+++=- ..| +| +-.| .+.++++|+. +++|+=+-
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimD-----------G~F-VP------------N~tfg~~~i~~lr~~~~~~~~dvH 68 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMD-----------NHY-VP------------NLTIGPMVCQALRKHGITAPIDVH 68 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeccc-----------Ccc-CC------------CcccCHHHHHHHHhhCCCCCEEEE
Confidence 466677889999999999987554411 011 12 2234 6789999988 58887665
Q ss_pred E-ecCHH-HHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc-
Q 018919 211 G-VLTAE-DARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV- 242 (349)
Q Consensus 211 ~-v~~~~-~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~- 242 (349)
. +.+++ .+....++|+|.|+++-. |- +. .| +|
T Consensus 69 LMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 69 LMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCc
Confidence 5 34564 467888999999998621 11 00 01 22
Q ss_pred ---hhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHH
Q 018919 243 ---PATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~e 313 (349)
+..++-+.++++.... ++.|-+||||. .+.+.++.++|||.+.+||+++ . .+...+.++.+++.
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF-~-----~~d~~~~~~~lr~~ 218 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF-N-----APDYAQVIAQMRAA 218 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhh-C-----CCCHHHHHHHHHHH
Confidence 2344555555554321 47799999998 4788888899999999999854 2 22244455555544
No 186
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.16 E-value=0.00026 Score=64.65 Aligned_cols=152 Identities=19% Similarity=0.181 Sum_probs=99.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK 210 (349)
.|+....+.++++++.|++.+-+++--. .| +| +-.+ .+.++++|+.+ ++|+-+|
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg-----------~f-vp------------n~~~G~~~v~~lr~~~~~~~lDvH 71 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDG-----------HF-VP------------NLSFGPPVVKSLRKHLPNTFLDCH 71 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccC-----------cc-CC------------CcCcCHHHHHHHHhcCCCCCEEEE
Confidence 4667778899999999999875544110 11 12 1123 57899999887 8999999
Q ss_pred Ee-cCHH-HHHHHHHcCCCEEEEecCCCCC--------------------------------C-----C-----------
Q 018919 211 GV-LTAE-DARIAVQAGAAGIIVSNHGARQ--------------------------------L-----D----------- 240 (349)
Q Consensus 211 ~v-~~~~-~a~~a~~~G~d~I~v~~~gg~~--------------------------------~-----~----------- 240 (349)
.- .+++ .++.+.++|+|.|++...++.. + |
T Consensus 72 Lm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~ 151 (228)
T PTZ00170 72 LMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGF 151 (228)
T ss_pred ECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCC
Confidence 86 5564 4678899999999986322210 0 0
Q ss_pred Cc----hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 241 YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 241 ~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
.| +..++-+.++++.. ....|.++|||+. +.+.++..+|||.+.+||++.. .+...+.++.++++++.
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~-~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~------a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRY-PHLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFK------AKDRKQAIELLRESVQK 223 (228)
T ss_pred CCcEecHHHHHHHHHHHHhc-ccCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhC------CCCHHHHHHHHHHHHHH
Confidence 01 11233444444433 2478999999987 6888889999999999999652 12234556666666554
No 187
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=98.15 E-value=0.00064 Score=61.61 Aligned_cols=172 Identities=14% Similarity=0.107 Sum_probs=113.1
Q ss_pred hHHHHHHHHHcCCeEEecCCCC------C----CHHHHHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 90 EYATARAASAAGTIMTLSSWST------S----SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~~------~----~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+..-.+.+.+.|..-.++|.-+ . .+.++++..+ ++..+|+.. .|.+.+.+.++++.+.+-. +.|-+
T Consensus 9 ~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~~-~d~e~mi~ea~~l~~~~~n-i~IKI 86 (220)
T PRK12653 9 DVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVMA-TTAEGMVNDARKLRSIIAD-IVVKV 86 (220)
T ss_pred CHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEec-CCHHHHHHHHHHHHHhCCC-EEEEe
Confidence 4455566666666655655411 1 2344444443 467789875 6777777777777776543 55555
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR 237 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~ 237 (349)
.+... | .+.++.+++. ++++-+-.+.+.+.|..|..+||++|... =||
T Consensus 87 P~T~~---------------G--------------l~A~~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR 134 (220)
T PRK12653 87 PVTAE---------------G--------------LAAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAPY--VNR 134 (220)
T ss_pred CCCHH---------------H--------------HHHHHHHHHc-CCCeeEEEecCHHHHHHHHhcCCcEEEee--cCh
Confidence 33210 0 3557777664 89999989999999999999999998653 233
Q ss_pred CCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 238 QLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 238 ~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
-.+.|...+..+.++.+.+ +.+..|++.+ +++..++.+++.+|||.+-+.-..+..+.
T Consensus 135 ~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~ 195 (220)
T PRK12653 135 IDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKTPRQALDCLLAGCESITLPLDVAQQMI 195 (220)
T ss_pred HhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 2223333344455554443 2245555555 99999999999999999999999988764
No 188
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=98.15 E-value=0.00061 Score=61.72 Aligned_cols=186 Identities=16% Similarity=0.104 Sum_probs=118.0
Q ss_pred hHHHHHHHHHcCCeEEecCCCC------C----CHHHHHhhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 90 EYATARAASAAGTIMTLSSWST------S----SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~~------~----~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+..-.+.+.+.|..-.++|.-+ . .++++++..+ ++..+|++. .|.+.+.+.++++.+.+-. +.|-+
T Consensus 9 ~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~qv~~-~d~e~mi~eA~~l~~~~~n-v~IKI 86 (220)
T PRK12655 9 NVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQTMS-RDAQGMVEEAKRLRNAIPG-IVVKI 86 (220)
T ss_pred CHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCCEEEEEee-CCHHHHHHHHHHHHHhCCC-EEEEe
Confidence 4445555666665555554411 1 2344555443 567789875 5777777777777766533 55555
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR 237 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~ 237 (349)
.+... | .+.++.+++. ++++-+-.+.+.+.|..|..+|+++|.. .=||
T Consensus 87 P~T~~---------------G--------------l~Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR 134 (220)
T PRK12655 87 PVTAE---------------G--------------LAAIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAP--YVNR 134 (220)
T ss_pred CCCHH---------------H--------------HHHHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEe--ecch
Confidence 33210 0 3567777664 8999998899999999999999998765 3233
Q ss_pred CCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcC--HHHHHHHHHHH
Q 018919 238 QLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 310 (349)
Q Consensus 238 ~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G--~~gv~~~l~~l 310 (349)
--+.|......+.++.+.+ +.+..|++.+ +++..++.+++.+||+.+-+.-..+..+...- ..+++.+.+.|
T Consensus 135 ~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 135 VDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKTPRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred HhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 2223333345555555444 2245566555 99999999999999999999999887765321 24454444443
No 189
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=98.14 E-value=0.00071 Score=61.35 Aligned_cols=172 Identities=16% Similarity=0.119 Sum_probs=112.5
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------CCCH----HHHHhhCC--CceEEEEeecCChhHHHHHHHHHHH-cCCCEEEE
Q 018919 90 EYATARAASAAGTIMTLSSWS-------TSSV----EEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIAL 155 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------~~~~----e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~-~G~~~i~i 155 (349)
|..-.+.+.+.|..-.++|.- .... +++++..+ .+..+|++. .+.+.+.+.++++.+ .| +-+.+
T Consensus 9 d~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~~i~~~i~~~~~vs~ev~~-~~~~~mi~eA~~l~~~~~-~nv~V 86 (222)
T PRK12656 9 NLEAIKKWHEILPLAGVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVVA-QDYEGILKDAHEIRRQCG-DDVYI 86 (222)
T ss_pred CHHHHHHHHhcCCcceEeCCHHHHHhcCCCCHHHHHHHHHHHhCCCCcEEEEEEE-CCHHHHHHHHHHHHHHhC-CCEEE
Confidence 444555566666555555441 1122 33444443 468899875 677777777777653 45 33555
Q ss_pred ecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCC
Q 018919 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG 235 (349)
Q Consensus 156 ~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~g 235 (349)
-+.+... | .+.++.+++. ++++-+-.+.+++.+..|.++||++|.. .=
T Consensus 87 KIP~T~~---------------G--------------l~Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP--yv 134 (222)
T PRK12656 87 KVPVTPA---------------G--------------LAAIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLAP--YY 134 (222)
T ss_pred EeCCCHH---------------H--------------HHHHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEec--cc
Confidence 5533210 0 3567777654 8999998899999999999999998765 33
Q ss_pred CCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 236 ARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
||--+.|......+.++.+.+ +.+..|++.+ +|+..++.+++.+||+.+-+.-..+..+.
T Consensus 135 gRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~a~~~G~d~vTvp~~vl~~l~ 197 (222)
T PRK12656 135 NRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKNVAQVNKAFALGAQAVTAGPDVFEAAF 197 (222)
T ss_pred chhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHHHcCCCEEecCHHHHHHHh
Confidence 442233333344555554443 3356667666 99999999999999999999998887654
No 190
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=0.00021 Score=64.08 Aligned_cols=151 Identities=24% Similarity=0.284 Sum_probs=100.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.|.....+.+++++++|++.+-+++=- ..| +| +-.+ -..++++|+.++.|+=+-.
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVMD-----------ghF-VP------------NiTfGp~~v~~l~~~t~~p~DvHL 68 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVMD-----------GHF-VP------------NITFGPPVVKALRKITDLPLDVHL 68 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccC-----------CCc-CC------------CcccCHHHHHHHhhcCCCceEEEE
Confidence 566777889999999999987655411 111 12 2234 5789999998889987766
Q ss_pred -ecCHH-HHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc--
Q 018919 212 -VLTAE-DARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV-- 242 (349)
Q Consensus 212 -v~~~~-~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~-- 242 (349)
+.+++ .+....++|||.|++.-. |- +. .| +|
T Consensus 69 MV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~ 148 (220)
T COG0036 69 MVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQK 148 (220)
T ss_pred ecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccc
Confidence 35554 478899999999999621 10 10 01 23
Q ss_pred --hhhHHHHHHHHHHhcC--CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 243 --PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 243 --~~~~~~l~~i~~~~~~--~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
+..++-++++++.... ++-|-+||||.. +.+.++.++|||.+..||+++. .......++.++.++
T Consensus 149 Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AGad~~VaGSalF~------~~d~~~~i~~~~~~~ 217 (220)
T COG0036 149 FIPEVLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAGADVFVAGSALFG------ADDYKATIRELRGEL 217 (220)
T ss_pred cCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcCCCEEEEEEEEeC------CccHHHHHHHHHHHh
Confidence 3455666666666542 578999999976 7777777899999999995432 222444555555543
No 191
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.14 E-value=5.6e-05 Score=67.23 Aligned_cols=158 Identities=21% Similarity=0.250 Sum_probs=99.3
Q ss_pred ChhhHHHHHHHHHcCCeEE-ecCCCCCCHH---HHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 87 PEGEYATARAASAAGTIMT-LSSWSTSSVE---EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 87 ~~~~~~la~aa~~~G~~~~-~~~~~~~~~e---~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
++.-..+++++.+.|+..+ ++-.+...++ .+++..|+. .+-.- . =.+.+.++++.++|++.+. +|
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAG---T-V~~~e~a~~a~~aGA~Fiv----SP-- 87 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDL-LVGAG---T-VLTAEQAEAAIAAGAQFIV----SP-- 87 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTS-EEEEE---S---SHHHHHHHHHHT-SEEE----ES--
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCC-eeEEE---e-ccCHHHHHHHHHcCCCEEE----CC--
Confidence 3334689999999998876 3333333333 334444532 12111 1 1234678889999999875 12
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY 241 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~ 241 (349)
.+ -+.++..+ ..++|++- ++.|+.++..|.++|++.|.+.-.+- -+
T Consensus 88 ----------------------------~~~~~v~~~~~-~~~i~~iP-G~~TptEi~~A~~~G~~~vK~FPA~~---~G 134 (196)
T PF01081_consen 88 ----------------------------GFDPEVIEYAR-EYGIPYIP-GVMTPTEIMQALEAGADIVKLFPAGA---LG 134 (196)
T ss_dssp ----------------------------S--HHHHHHHH-HHTSEEEE-EESSHHHHHHHHHTT-SEEEETTTTT---TT
T ss_pred ----------------------------CCCHHHHHHHH-HcCCcccC-CcCCHHHHHHHHHCCCCEEEEecchh---cC
Confidence 12 24455555 45898874 78999999999999999999964321 12
Q ss_pred chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 242 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 242 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|+ ..++.++.-+ .+++++.+|||.. +++..++.+|+.+|++|+.+..
T Consensus 135 G~---~~ik~l~~p~-p~~~~~ptGGV~~-~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 135 GP---SYIKALRGPF-PDLPFMPTGGVNP-DNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp HH---HHHHHHHTTT-TT-EEEEBSS--T-TTHHHHHTSTTBSEEEESGGGS
T ss_pred cH---HHHHHHhccC-CCCeEEEcCCCCH-HHHHHHHhCCCEEEEECchhcC
Confidence 34 3444444444 3799999999987 7999999999999999997764
No 192
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.13 E-value=5.7e-05 Score=77.01 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEchHHHH
Q 018919 246 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVY 293 (349)
Q Consensus 246 ~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~GA~~V~ig~~~l~ 293 (349)
++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++.|.+
T Consensus 471 ~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 471 IELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 44555555555 799999999999999999998 68999999998876
No 193
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=98.12 E-value=2.7e-05 Score=71.42 Aligned_cols=127 Identities=24% Similarity=0.311 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh---cCCcEEEEEecC
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI---TKLPILVKGVLT 214 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~---~~~pv~vK~v~~ 214 (349)
...++.+.+.|++.+.+.++.... . +. +.+. .+.++++++. +++|+++-....
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~-------~-----~~-----------~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGAL-------G-----SG-----------NEDEVIEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHH-------H-----TT-----------HHHHHHHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHcCCceeeeecccccc-------c-----cc-----------cHHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 466788889999999877753100 0 00 0111 3445555444 578888775544
Q ss_pred HHH-------------HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCc----EEEecCC------CCH
Q 018919 215 AED-------------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP----VFLDGGV------RRG 271 (349)
Q Consensus 215 ~~~-------------a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip----via~GGI------~~~ 271 (349)
.+. ++.+.++|+|.|..+.. +. ........+.+.++.+.. .+| |.++||| ++.
T Consensus 136 ~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~-~~~t~~~~~~~~~~~~~~--~~p~~~~Vk~sGGi~~~~~~~~l 211 (236)
T PF01791_consen 136 GEEVADEKKPDLIARAARIAAELGADFVKTSTG-KP-VGATPEDVELMRKAVEAA--PVPGKVGVKASGGIDAEDFLRTL 211 (236)
T ss_dssp HHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SS-SCSHHHHHHHHHHHHHTH--SSTTTSEEEEESSSSHHHHHHSH
T ss_pred chhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cc-ccccHHHHHHHHHHHHhc--CCCcceEEEEeCCCChHHHHHHH
Confidence 333 57789999999999743 21 122233445555555544 566 9999999 999
Q ss_pred HHHHHHHHhCC--CEEEEchHHH
Q 018919 272 TDVFKALALGA--SGIFIGRPVV 292 (349)
Q Consensus 272 ~dv~kal~~GA--~~V~ig~~~l 292 (349)
+++.+++.+|| .++..||.+.
T Consensus 212 ~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 212 EDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp HHHHHHHHTTHSEEEEEEHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHH
Confidence 99999999999 8888888764
No 194
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.10 E-value=0.00014 Score=67.56 Aligned_cols=118 Identities=23% Similarity=0.316 Sum_probs=78.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHH---HHHHHHhcCCcEEEEEe----
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDED---VKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~pv~vK~v---- 212 (349)
..++.+.+.|++++.+....-..+ +.+..+. +.++.+.+++|+++...
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~-------------------------~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gv 148 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDT-------------------------EWEQIRDLGMIAEICDDWGVPLLAMMYPRGP 148 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCch-------------------------HHHHHHHHHHHHHHHHHcCCCEEEEEeccCc
Confidence 457788899999988765421000 0111233 44444557899887432
Q ss_pred ----cCH---HH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC--CHHHHH----HHH
Q 018919 213 ----LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVF----KAL 278 (349)
Q Consensus 213 ----~~~---~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~--~~~dv~----kal 278 (349)
.+. .. ++.+.++|+|+|.++.. ...+.+.++.+.. ++||++.|||+ +.+++. +++
T Consensus 149 h~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~ 217 (258)
T TIGR01949 149 HIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAM 217 (258)
T ss_pred ccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 122 22 57788999999998521 1356677776655 79999999999 655554 455
Q ss_pred HhCCCEEEEchHHHH
Q 018919 279 ALGASGIFIGRPVVY 293 (349)
Q Consensus 279 ~~GA~~V~ig~~~l~ 293 (349)
++||+++.+|+.++.
T Consensus 218 ~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 218 EAGAAGVAVGRNIFQ 232 (258)
T ss_pred HcCCcEEehhhHhhc
Confidence 899999999998874
No 195
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.08 E-value=0.00013 Score=66.20 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=67.4
Q ss_pred HHHHHHhcCCcEEEEE--ecCHHHHHHHHHcCCCEEEEecCCCC-CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~--v~~~~~a~~a~~~G~d~I~v~~~gg~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+..+|+..+--.++.. ..+.+++..+.+.|+|+|.++.---+ ..+..+..++.+.++++.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 4555555432234443 24678888899999999998643111 1112223456676666665 7999999999 889
Q ss_pred HHHHHHHhCCCEEEEchHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~ 293 (349)
++.+++..||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999874
No 196
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.08 E-value=5.6e-05 Score=66.44 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=60.3
Q ss_pred cCHHHHHHHHHcCCCEEEEecCC--CC-CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHG--AR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~g--g~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+.++++.+.+.|+|.|.++... .. +....+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 57889999999999999986431 11 1111344567777777654 79999999995 6999999999999999999
Q ss_pred HHHH
Q 018919 290 PVVY 293 (349)
Q Consensus 290 ~~l~ 293 (349)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 9763
No 197
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.07 E-value=8.5e-05 Score=66.50 Aligned_cols=135 Identities=30% Similarity=0.391 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.+.++.++++|+-++.. +.- -+.|+|..-.+. -+-|| +.|+++.+...+||+.|.. -+..+
T Consensus 30 ~EQA~IAE~aGAvAVMa-Ler-----vPaDiR~aGGVa---------RMaDp---~~i~eim~aVsIPVMAKvRIGH~~E 91 (296)
T COG0214 30 AEQARIAEEAGAVAVMA-LER-----VPADIRAAGGVA---------RMADP---KMIEEIMDAVSIPVMAKVRIGHFVE 91 (296)
T ss_pred HHHHHHHHhcCceeEee-hhh-----CcHHHHhccCcc---------ccCCH---HHHHHHHHhcccceeeeeecchhHH
Confidence 45678889999988642 321 113444221100 02233 6788888999999999986 56788
Q ss_pred HHHHHHcCCCEEEEec---------C------------CCCCC---------------C-----Cc--------------
Q 018919 218 ARIAVQAGAAGIIVSN---------H------------GARQL---------------D-----YV-------------- 242 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~---------~------------gg~~~---------------~-----~~-------------- 242 (349)
|+.+...|+|.|.=|- | |.|.+ . +|
T Consensus 92 A~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~ 171 (296)
T COG0214 92 AQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKING 171 (296)
T ss_pred HHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999998551 1 21110 0 00
Q ss_pred --------------------hhhHHHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 243 --------------------PATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 243 --------------------~~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..+.+.+.++++. +++|| ++.|||.||.|++-++.+|||+|++|+-++.
T Consensus 172 eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 172 EIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 0112333333332 35555 6899999999999999999999999997764
No 198
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.05 E-value=0.0021 Score=60.62 Aligned_cols=108 Identities=25% Similarity=0.333 Sum_probs=77.3
Q ss_pred cCHHHHHHHHH-cCCCEEEEec---CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 018919 213 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 213 ~~~~~a~~a~~-~G~d~I~v~~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~dv~kal~~GA~~V~ 286 (349)
.++|+|+.+.+ .|+|.+.++. ||-.. ....-.++.|.++++.+ ++|+++=| ||.. +++.+++.+|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~~-e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIPE-EQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCCH-HHHHHHHHcCCCEEE
Confidence 47899999997 9999999752 43221 11223578899998887 79999999 9875 889999999999999
Q ss_pred EchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 287 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 287 ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++|.+..+... .. ..-+....+.+.+..+..|..+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654321 00 1223344566777777788877753
No 199
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.04 E-value=0.00042 Score=61.97 Aligned_cols=162 Identities=23% Similarity=0.272 Sum_probs=98.3
Q ss_pred HHHHHHHHcCCeEE-e--cCCCCC--CHHH---HHhhCCC-ceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 92 ATARAASAAGTIMT-L--SSWSTS--SVEE---VASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 92 ~la~aa~~~G~~~~-~--~~~~~~--~~e~---i~~~~~~-~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
.-++.|.+.|+-++ + -..+.. +.+. +.+..+. ...+-++.+.+.+ +..+.+.+.|++++.++-+-+
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~---~i~~ia~~~~~d~Vqlhg~e~-- 84 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLE---EILEIAEELGLDVVQLHGDES-- 84 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHH---HHHHHHHhcCCCEEEECCCCC--
Confidence 56777788886543 1 122222 2332 3333332 2345556544433 344556678899887653211
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHH--HHHHHHcCCCEEEEecCCCCCC
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAED--ARIAVQAGAAGIIVSNHGARQL 239 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~--a~~a~~~G~d~I~v~~~gg~~~ 239 (349)
.+.++.+++..+.+++-.. +.+..+ +..+...|+|++.+........
T Consensus 85 ------------------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~ 134 (203)
T cd00405 85 ------------------------------PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGG 134 (203)
T ss_pred ------------------------------HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCC
Confidence 2456777776677776222 233333 2355668999998865321110
Q ss_pred --CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEchHHHH
Q 018919 240 --DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 293 (349)
Q Consensus 240 --~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~~V~ig~~~l~ 293 (349)
.+-+..++.+.++. . ++|+++.||| +++.+.+++..| +++|-+.|.+..
T Consensus 135 Gg~g~~~~~~~l~~~~--~--~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 135 GGTGKTFDWSLLRGLA--S--RKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred CCCcceEChHHhhccc--c--CCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 12234577776654 2 7899999999 999999999999 999999998763
No 200
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.03 E-value=5.7e-05 Score=68.90 Aligned_cols=75 Identities=28% Similarity=0.356 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+..-.+. ..+.+..++.+.++++.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 5678888899999998754221 123456788888888876 79999999999999999999999999999998874
No 201
>PRK12376 putative translaldolase; Provisional
Probab=98.02 E-value=0.0016 Score=59.54 Aligned_cols=175 Identities=16% Similarity=0.170 Sum_probs=114.2
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------CCCHH----HHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 90 EYATARAASAAGTIMTLSSWS-------TSSVE----EVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------~~~~e----~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+..-.+.+.+.|..-.++|.- ..+.+ ++.+..+ ++..+|++. .+.+.+.+.++++.+.+-. +.|.+
T Consensus 14 d~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~~-~d~~~mv~eA~~l~~~~~n-v~VKI 91 (236)
T PRK12376 14 DLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVFA-DDLETMEKEAEKIASLGEN-VYVKI 91 (236)
T ss_pred CHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEec-CCHHHHHHHHHHHHHhCCC-eEEEE
Confidence 455666667777665565541 11233 3444444 567889864 6777777777777777544 55555
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHc----CCCEEEEe
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQA----GAAGIIVS 232 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~----G~d~I~v~ 232 (349)
.+... +..- .+.++.+.+. ++++-+-.+.++..+..+.++ |+++|..
T Consensus 92 P~T~~--------------------------~G~~gl~Ai~~L~~~-GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yisp- 143 (236)
T PRK12376 92 PITNT--------------------------KGESTIPLIKKLSAD-GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSV- 143 (236)
T ss_pred CCcCc--------------------------cchhHHHHHHHHHHC-CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEE-
Confidence 43210 0001 4567777665 899999889999999765555 5888765
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 233 NHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 233 ~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.=||-.|.|......+.++.+.+. .+..|++.+ ||+..++.+++.+|||.|-+.-..+..+.
T Consensus 144 -fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T PRK12376 144 -FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTPDVLKKLP 207 (236)
T ss_pred -ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 334433444444555656655442 256777766 99999999999999999999988887665
No 202
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=98.01 E-value=0.00047 Score=67.61 Aligned_cols=182 Identities=16% Similarity=0.191 Sum_probs=108.0
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeE-EecC-----CCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHH
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-TLSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVR 143 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~-~~~~-----~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~ 143 (349)
..|.++-++.... .+.-..+++.+...+..+ =+|+ ++...++++++..+ .+.+.-|-. .|++.+. ++
T Consensus 171 ~~p~L~vALD~~~---~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~-~Di~~~v--v~ 244 (391)
T PRK13307 171 DPPYLQVALDLPD---LEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKT-LDTGNLE--AR 244 (391)
T ss_pred ccceEEEecCCCC---HHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecc-cChhhHH--HH
Confidence 4577777765422 222234444444332222 1332 12233556666544 345555543 4555443 77
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe--cCHHHHHH
Q 018919 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV--LTAEDARI 220 (349)
Q Consensus 144 ~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v--~~~~~a~~ 220 (349)
.+.++|++.+.+|..++ ... .+.++.+++ .++-+.+-.+ .++.+...
T Consensus 245 ~~a~aGAD~vTVH~ea~-----------------------------~~ti~~ai~~akk-~GikvgVD~lnp~tp~e~i~ 294 (391)
T PRK13307 245 MAADATADAVVISGLAP-----------------------------ISTIEKAIHEAQK-TGIYSILDMLNVEDPVKLLE 294 (391)
T ss_pred HHHhcCCCEEEEeccCC-----------------------------HHHHHHHHHHHHH-cCCEEEEEEcCCCCHHHHHH
Confidence 78899999998886432 111 234666665 4666555322 34443333
Q ss_pred HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 221 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
....++|.|.+.. +....+..+.++.+.++++. ..+++|.++|||. .+++.+++.+|||.+.+||+++
T Consensus 295 ~l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 295 SLKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VENVEEALKAGADILVVGRAIT 362 (391)
T ss_pred HhhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 3488999998842 21111224456677777665 3478999999999 7889899999999999999965
No 203
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.98 E-value=0.00034 Score=64.48 Aligned_cols=121 Identities=19% Similarity=0.210 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCEEE-EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHH
Q 018919 139 AQLVRRAERAGFKAIA-LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~-i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~ 217 (349)
.+.+++.++.|++.+- ++++. + ..+.++++.+.+++||.+.+-...++
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDLg~------------------------------~-n~~~i~~i~~~~~~~v~vGGGIr~e~ 89 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIMLGP------------------------------N-NDDAAKEALHAYPGGLQVGGGINDTN 89 (253)
T ss_pred HHHHHHHHHcCCCEEEEEECCC------------------------------C-cHHHHHHHHHhCCCCEEEeCCcCHHH
Confidence 4578888999999984 34411 1 14678888888889988877544588
Q ss_pred HHHHHHcCCCEEEEecC-------------------CC-C---C---C---C-------------Cch------------
Q 018919 218 ARIAVQAGAAGIIVSNH-------------------GA-R---Q---L---D-------------YVP------------ 243 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~-------------------gg-~---~---~---~-------------~~~------------ 243 (349)
++.+.++||+.+++++. |. + . . + .+.
T Consensus 90 v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~ 169 (253)
T TIGR02129 90 AQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSK 169 (253)
T ss_pred HHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHh
Confidence 99999999998888630 11 0 0 0 0 011
Q ss_pred ------------------hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHh--CCCEEEEchHHH
Q 018919 244 ------------------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIGRPVV 292 (349)
Q Consensus 244 ------------------~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~--GA~~V~ig~~~l 292 (349)
+.++.+.++.+.. ++|||++||+.+.+|+.++-.+ |...+.+|++++
T Consensus 170 ~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 170 YCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALD 236 (253)
T ss_pred hCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHH
Confidence 1223334444433 7999999999999999988555 666688898865
No 204
>PRK08005 epimerase; Validated
Probab=97.97 E-value=0.00095 Score=60.06 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=89.6
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.|.....+.+++++++|++.+-+++=- ..| +| +-.+ -+.++++|+.++.|+=+-.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMD-----------G~F-VP------------N~tfG~~~i~~l~~~t~~~~DvHL 65 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIED-----------TSF-IN------------NITFGMKTIQAVAQQTRHPLSFHL 65 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccC-----------CCc-CC------------ccccCHHHHHHHHhcCCCCeEEEe
Confidence 566777889999999999986554411 011 12 1233 5789999988888876665
Q ss_pred e-cCHHH-HHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc--
Q 018919 212 V-LTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV-- 242 (349)
Q Consensus 212 v-~~~~~-a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~-- 242 (349)
. .+|+. ++...++|+|.|++.-. |. +. .| +|
T Consensus 66 Mv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~ 145 (210)
T PRK08005 66 MVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQ 145 (210)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccce
Confidence 3 45654 67888999999998521 11 00 01 12
Q ss_pred --hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 243 --PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 243 --~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..++-+.++++... ...|-+||||+ .+.+.++.++|||.+.+||+++
T Consensus 146 f~~~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 146 FIAAMCEKVSQSREHFP-AAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred ecHHHHHHHHHHHHhcc-cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 223445555544432 35799999998 4778788999999999999864
No 205
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.97 E-value=4.6e-05 Score=69.48 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.|+.+.+.|+|.+.+....+. ..+.+..++.+.++.+.+ ++|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 37788888999999999743221 122445678888888877 79999999999999999999999999999998763
No 206
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.96 E-value=0.0011 Score=60.32 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=95.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.|.....+.++++++ |++.+-+++=- ..| +| +-.+ -+.++++|+.+++|+=+-.
T Consensus 12 ad~~~l~~el~~l~~-g~d~lH~DiMD-----------G~F-VP------------N~tfg~~~i~~ir~~t~~~~DvHL 66 (229)
T PRK09722 12 MDLLKFKEQIEFLNS-KADYFHIDIMD-----------GHF-VP------------NLTLSPFFVSQVKKLASKPLDVHL 66 (229)
T ss_pred cCHHHHHHHHHHHHh-CCCEEEEeccc-----------Ccc-CC------------CcccCHHHHHHHHhcCCCCeEEEE
Confidence 466667788888888 88886554411 011 12 1223 5789999988888876655
Q ss_pred -ecCHH-HHHHHHHcCCCEEEEecC----------------CCC---------C----------CC-----------Cc-
Q 018919 212 -VLTAE-DARIAVQAGAAGIIVSNH----------------GAR---------Q----------LD-----------YV- 242 (349)
Q Consensus 212 -v~~~~-~a~~a~~~G~d~I~v~~~----------------gg~---------~----------~~-----------~~- 242 (349)
+.+|+ .++...++|+|.|++.-. |-+ . .| +|
T Consensus 67 Mv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ 146 (229)
T PRK09722 67 MVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQ 146 (229)
T ss_pred EecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcch
Confidence 35664 467888999999998521 100 0 01 12
Q ss_pred ---hhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 243 ---PATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 243 ---~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
+.+++-+.++++.... ++.|-+||||+. +.+.++.++|||.+.+||..+|+. .+...+.++.+++.++
T Consensus 147 ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~~i~~~~~aGad~~V~Gss~iF~~----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 147 PFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ-KTYEKLMEAGADVFIVGTSGLFNL----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEEChHHHcCC----CCCHHHHHHHHHHHHH
Confidence 2344455555554321 477999999984 688888999999999998766621 1223445566655443
No 207
>PRK06801 hypothetical protein; Provisional
Probab=97.96 E-value=0.0041 Score=58.65 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=74.1
Q ss_pred cCHHHHHHHH-HcCCCEEEEecCCCCCCCCc--hhhHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHhCCCEEEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GG--I~~~~dv~kal~~GA~~V~i 287 (349)
.++++|++.. +.|+|.+.++...-+..+.+ ...++.|.++++.+ ++|+++-|| |. .+++.+++.+|++.|-+
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINF 232 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEe
Confidence 3568888887 79999999853211112223 24688899998877 699999999 77 47899999999999999
Q ss_pred chHHHHHHhh-------cCH-------HHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 288 GRPVVYSLAA-------EGE-------KGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 288 g~~~l~~~~~-------~G~-------~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
+|.+..+... ... .-.....+.+++..+..|+.+|..
T Consensus 233 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 233 YTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred hhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9987654311 010 112333455666666777777643
No 208
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.94 E-value=0.00024 Score=62.76 Aligned_cols=135 Identities=27% Similarity=0.372 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~ 217 (349)
.+.++.++++|+.++..--..| .|+|..-.+- + +-|| ..|+++++...+|++.|.. -+.-+
T Consensus 31 ~eQA~iAE~aGACaVmalervP------adiR~~GgV~-----R----MsDP---~mIKei~~aVsiPVMAk~RiGHFVE 92 (296)
T KOG1606|consen 31 AEQARIAEEAGACAVMALERVP------ADIRAQGGVA-----R----MSDP---RMIKEIKNAVSIPVMAKVRIGHFVE 92 (296)
T ss_pred HHHHHHHHhcCcceEeeeccCC------HhHHhcCCee-----e----cCCH---HHHHHHHHhccchhhhhhhhhhhhH
Confidence 4567888999998875322222 2333211100 0 2233 6788888888999999975 45678
Q ss_pred HHHHHHcCCCEEEEe---------cC------------CCCC------------------CC--Cch-------------
Q 018919 218 ARIAVQAGAAGIIVS---------NH------------GARQ------------------LD--YVP------------- 243 (349)
Q Consensus 218 a~~a~~~G~d~I~v~---------~~------------gg~~------------------~~--~~~------------- 243 (349)
|+.+...|+|+|.=| +| |-+. .+ .|.
T Consensus 93 AQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~g 172 (296)
T KOG1606|consen 93 AQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSING 172 (296)
T ss_pred HHHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHH
Confidence 889999999998744 11 1110 00 010
Q ss_pred ---------------------hhHHHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 244 ---------------------ATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 244 ---------------------~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.+.+.+..+. +++|| ++.|||.++.|++-++.+|+|+|.+|+-++.
T Consensus 173 eir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~--GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 173 EIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQL--GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred HHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHc--CCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 011122221111 46676 6899999999999999999999999996653
No 209
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.93 E-value=0.00047 Score=62.18 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=99.1
Q ss_pred hhhHHHHHHHHHcCCeEE-ecCCCCC---CHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 88 EGEYATARAASAAGTIMT-LSSWSTS---SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 88 ~~~~~la~aa~~~G~~~~-~~~~~~~---~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
+.-..+++++.+.|+..+ ++-.++. .++++++..|+. .+ - .+--.+.+.++.+.++|++.+. +|.
T Consensus 27 ~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~-~I--G--AGTVl~~~~a~~a~~aGA~Fiv----sP~-- 95 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEA-LI--G--AGTVLNPEQLAQAIEAGAQFIV----SPG-- 95 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCC-EE--E--EeeccCHHHHHHHHHcCCCEEE----CCC--
Confidence 334578999999998865 4422222 344555555532 11 1 1112234678888999999875 121
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCch
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVP 243 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~ 243 (349)
.+ -+.++..++ .++|++- ++.|+.++..+.++|++.|.+.-.+- . +|+
T Consensus 96 ------------------------~~---~~vi~~a~~-~~i~~iP-G~~TptEi~~a~~~Ga~~vKlFPa~~--~-gg~ 143 (212)
T PRK05718 96 ------------------------LT---PPLLKAAQE-GPIPLIP-GVSTPSELMLGMELGLRTFKFFPAEA--S-GGV 143 (212)
T ss_pred ------------------------CC---HHHHHHHHH-cCCCEeC-CCCCHHHHHHHHHCCCCEEEEccchh--c-cCH
Confidence 01 244555544 6888864 68899999999999999999953210 1 223
Q ss_pred hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 244 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 244 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
..++.++.-++ +++++..|||.. +++.+++.+|+..++.|+.+
T Consensus 144 ---~~lk~l~~p~p-~~~~~ptGGV~~-~ni~~~l~ag~v~~vggs~L 186 (212)
T PRK05718 144 ---KMLKALAGPFP-DVRFCPTGGISP-ANYRDYLALPNVLCIGGSWM 186 (212)
T ss_pred ---HHHHHHhccCC-CCeEEEeCCCCH-HHHHHHHhCCCEEEEEChHh
Confidence 34444444443 699999999987 89999999996555555444
No 210
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.00047 Score=61.55 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=102.9
Q ss_pred CCHHHHHhhCCCceE-EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC
Q 018919 112 SSVEEVASTGPGIRF-FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (349)
Q Consensus 112 ~~~e~i~~~~~~~~~-~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (349)
..++.+++..|...+ .-+ +.-+.-.=.++.+.++|++++.+---.| .
T Consensus 45 ~aV~~lr~~~pd~~IvAD~---Kt~D~G~~e~~ma~~aGAd~~tV~g~A~-----------------------------~ 92 (217)
T COG0269 45 RAVRALRELFPDKIIVADL---KTADAGAIEARMAFEAGADWVTVLGAAD-----------------------------D 92 (217)
T ss_pred HHHHHHHHHCCCCeEEeee---eecchhHHHHHHHHHcCCCEEEEEecCC-----------------------------H
Confidence 456777888884333 222 2222223356788899999976422111 1
Q ss_pred chHH-HHHHHHHhcCCcEEEEEe--cCHHHHHH-HHHcCCCEEEEecCCCC--CCCCchhhHHHHHHHHHHhcCCCcEEE
Q 018919 191 KMDE-DVKWLQTITKLPILVKGV--LTAEDARI-AVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFL 264 (349)
Q Consensus 191 ~~~~-~i~~i~~~~~~pv~vK~v--~~~~~a~~-a~~~G~d~I~v~~~gg~--~~~~~~~~~~~l~~i~~~~~~~ipvia 264 (349)
...+ -++..+ ++++-+.+=++ .++++..+ +.++|+|.+.+ |-|+ |..+-.+.++.|.++++.......|-.
T Consensus 93 ~TI~~~i~~A~-~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV 169 (217)
T COG0269 93 ATIKKAIKVAK-EYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV 169 (217)
T ss_pred HHHHHHHHHHH-HcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHHHHhhccCceEEE
Confidence 1122 344444 46777776665 45666554 44599999999 5554 222333346777777776643589999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
.|||. ++++-.+...|++.|.+||++. +..++.+..+.+++++.
T Consensus 170 aGGI~-~~~i~~~~~~~~~ivIvGraIt------~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 170 AGGIT-PEDIPLFKGIGADIVIVGRAIT------GAKDPAEAARKFKEEID 213 (217)
T ss_pred ecCCC-HHHHHHHhcCCCCEEEECchhc------CCCCHHHHHHHHHHHHh
Confidence 99986 5999999999999999999886 34444556667777664
No 211
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.87 E-value=0.00025 Score=62.91 Aligned_cols=81 Identities=22% Similarity=0.243 Sum_probs=61.0
Q ss_pred EecCHHHHHHHHHcCCCEEEEecCCCCCCCC---chhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 211 GVLTAEDARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 211 ~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+-+.+++.++.+.|+|+|.++.-..+..+. .+..++.+.++.+... ++||++.||| +.+++.+++.+||++|.+
T Consensus 102 s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 102 STHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 3567888889999999999986532221111 1224677777766542 5999999999 589999999999999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
|+.++.
T Consensus 180 ~~~i~~ 185 (196)
T TIGR00693 180 VSAIMQ 185 (196)
T ss_pred hHHhhC
Confidence 999873
No 212
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.87 E-value=7.1e-05 Score=69.60 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecC-HHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT-AED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~-~~~ 217 (349)
.+.++.++++|++.+.++..||.. .+.. .++-. +.+ .++|+.+++.+++||+.|.... ..+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd------~~~~----gg~~R-----m~~---p~~I~aIk~~V~iPVigk~Righ~~E 88 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD------IRAA----GGVAR-----MAD---PKMIEEIMDAVSIPVMAKARIGHFVE 88 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch------Hhhc----CCeee-----cCC---HHHHHHHHHhCCCCeEEeehhhHHHH
Confidence 457888999999999999999853 1110 01100 112 3778899999999999998644 789
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
|+.+.++|+|.|.-|.. - .|.-+.+..++..+ ++|++ -|++|-++++.++.+|||.|.
T Consensus 89 a~~L~~~GvDiID~Te~------l-rpad~~~~~~K~~f--~~~fm--ad~~~l~EAlrai~~GadmI~ 146 (293)
T PRK04180 89 AQILEALGVDYIDESEV------L-TPADEEYHIDKWDF--TVPFV--CGARNLGEALRRIAEGAAMIR 146 (293)
T ss_pred HHHHHHcCCCEEeccCC------C-CchHHHHHHHHHHc--CCCEE--ccCCCHHHHHHHHHCCCCeee
Confidence 99999999999953221 0 11234455555444 56666 579999999999999999875
No 213
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.86 E-value=0.00014 Score=67.00 Aligned_cols=74 Identities=27% Similarity=0.239 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+..--+. .+.....+.+.++.+.+ .+||.++|||+|.+|+.+++.+||+.|.+|+..+.
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 6788888999998887542221 13345678899998887 79999999999999999999999999999998764
No 214
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.84 E-value=0.00035 Score=67.51 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=68.5
Q ss_pred HHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+...|+..+ -.++--.+-+.+++..|.+.|+|+|.++.-..+.- ...+..++.+..+++.. ++||++-|||. .+
T Consensus 230 ~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ 306 (347)
T PRK02615 230 LAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KS 306 (347)
T ss_pred HHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HH
Confidence 344455443 23332234678999999999999999875433321 11234467777777655 79999999995 79
Q ss_pred HHHHHHHhCCCEEEEchHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~ 293 (349)
++.+.+++||++|.++++++.
T Consensus 307 ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 307 NIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHHcCCcEEEEeHHHhC
Confidence 999999999999999999873
No 215
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.83 E-value=0.00021 Score=65.92 Aligned_cols=128 Identities=23% Similarity=0.209 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe--
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-- 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-- 212 (349)
+.-...++.+.+.|++-|.+-++... ++ . .+-+. .++|+++++..+-++.+|.+
T Consensus 83 ~~K~~Ea~~Ai~~GAdEiD~Vinig~-------lk------------~----g~~~~v~~ei~~v~~~~~~~~~lKVIlE 139 (257)
T PRK05283 83 DIALAETRAAIAYGADEVDVVFPYRA-------LM------------A----GNEQVGFELVKACKEACAANVLLKVIIE 139 (257)
T ss_pred HHHHHHHHHHHHcCCCEEeeeccHHH-------Hh------------C----CcHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 34445666777889998766554310 00 0 01222 46788888876434677876
Q ss_pred ---cCHHH-----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHH
Q 018919 213 ---LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 213 ---~~~~~-----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~ 279 (349)
++.++ .+.+.++|||+|..|..-+ .+..+.+.+.-+++.+ ++++-|=++||||+.+++.+++.
T Consensus 140 t~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ 215 (257)
T PRK05283 140 TGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLA 215 (257)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHH
Confidence 33332 3568899999999874311 2234455554444444 34689999999999999999999
Q ss_pred hCCCEEEEchHHH
Q 018919 280 LGASGIFIGRPVV 292 (349)
Q Consensus 280 ~GA~~V~ig~~~l 292 (349)
+|.+. +|.-|+
T Consensus 216 ag~~~--lg~~~~ 226 (257)
T PRK05283 216 LADEI--LGADWA 226 (257)
T ss_pred HHHHH--hChhhc
Confidence 98764 355554
No 216
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.83 E-value=0.012 Score=55.65 Aligned_cols=79 Identities=23% Similarity=0.398 Sum_probs=62.8
Q ss_pred cCHHHHHHHHHcCCCEEEEe--c-CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHhCCCEEEE
Q 018919 213 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG--I~~~~dv~kal~~GA~~V~i 287 (349)
.++++|+.+.+.|+|.+-++ + ||-.....-.-.++.|.++++.+. ++|+++=|| |.. +++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~~-e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIPD-DQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCCH-HHHHHHHHcCCCEEEE
Confidence 47899999999999999998 3 554321111346788999988872 499999999 876 8899999999999999
Q ss_pred chHHHH
Q 018919 288 GRPVVY 293 (349)
Q Consensus 288 g~~~l~ 293 (349)
+|.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998864
No 217
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.83 E-value=0.00075 Score=60.83 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=94.4
Q ss_pred hHHHHHHHHHcCCeEE-ecC----CC---CCCHHH---HHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 90 EYATARAASAAGTIMT-LSS----WS---TSSVEE---VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~-~~~----~~---~~~~e~---i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
-...++.+.++|+..+ +.. +. ...++. +++..+.+.-+.++.+ +.+ +.++.+.++|++++.++..
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~-d~~---~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE-NPD---RYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC-CHH---HHHHHHHHcCCCEEEEeec
Confidence 3467888889997654 311 11 112333 3322221222444442 333 3456667889999988764
Q ss_pred CCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecC--C
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--G 235 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~--g 235 (349)
.+ ....+.++.+++. ++.+++-.. .+..+..+....++|+|.+... |
T Consensus 94 ~~-----------------------------~~~~~~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g 143 (220)
T PRK05581 94 AS-----------------------------EHIHRLLQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPG 143 (220)
T ss_pred cc-----------------------------hhHHHHHHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCC
Confidence 21 0113446666653 555544221 2333333344456898876542 2
Q ss_pred CCCCCCchhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 236 ARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++.....+...+.+.++++..+. ..+|.++|||+. +++.+++..|+|.|.+||+++.
T Consensus 144 ~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 144 FGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 22111223334555555554422 144779999999 8999999999999999999873
No 218
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.82 E-value=0.0015 Score=61.28 Aligned_cols=143 Identities=22% Similarity=0.208 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhh---hcCCCCcCcccccCCCCCCch-----HHHHHHHHHhc-CCcEE
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNFQGLDLGKM-----DEDVKWLQTIT-KLPIL 208 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~---~~~~p~~~~~~~~~~~~~~~~-----~~~i~~i~~~~-~~pv~ 208 (349)
+.++++.+++.+.+...++-.-..+|.|.-+... +-..|..+++...-=..|-.. .+.++.+|+.. ..+|.
T Consensus 107 T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIe 186 (278)
T PRK08385 107 TRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVE 186 (278)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 4455666666677776666665666777533221 111222221111000111111 24477777754 35555
Q ss_pred EEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCcEEEecCCCCHHHHHHHHHhCCC
Q 018919 209 VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGAS 283 (349)
Q Consensus 209 vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~dv~kal~~GA~ 283 (349)
| .+.+.++++.++++|+|.|.+.|- +.+.+.++++.+ +.++.+.++||| +.+.+.++.+.|+|
T Consensus 187 V-Ev~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD 254 (278)
T PRK08385 187 V-EVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVD 254 (278)
T ss_pred E-EeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCC
Confidence 5 568999999999999999988763 233444444433 246889999999 88999999999999
Q ss_pred EEEEchHHH
Q 018919 284 GIFIGRPVV 292 (349)
Q Consensus 284 ~V~ig~~~l 292 (349)
.+.+|.++.
T Consensus 255 ~Is~galt~ 263 (278)
T PRK08385 255 VISLGALTH 263 (278)
T ss_pred EEEeChhhc
Confidence 999998765
No 219
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.79 E-value=0.00035 Score=65.84 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecC
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGG 267 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GG 267 (349)
.+.++.+|+..+ .+|.+ .+.+.+++..+.++|+|.|.+.|- ++ +.+.++.+.+ ..++|+.++||
T Consensus 183 ~~av~~~r~~~~~~~~I~V-Ev~tleea~eA~~~GaD~I~LDn~-------~~---e~l~~av~~~~~~~~~i~leAsGG 251 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEV-ETETLEQVQEALEYGADIIMLDNM-------PV---DLMQQAVQLIRQQNPRVKIEASGN 251 (288)
T ss_pred HHHHHHHHHhCCCCCEEEE-ECCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHHHhcCCCeEEEEECC
Confidence 355888888764 33333 357899999999999999999753 23 3444444433 35799999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 268 VRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| +.+.+.++.+.|+|.+.+|+++.
T Consensus 252 I-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 252 I-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred C-CHHHHHHHHHcCCCEEEEchhhh
Confidence 9 58999999999999999999775
No 220
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.78 E-value=0.00032 Score=65.74 Aligned_cols=86 Identities=24% Similarity=0.312 Sum_probs=66.0
Q ss_pred HHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 195 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 195 ~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
.++.+|+..+ .+|.+ .+-+.++++.+.++|+|+|.+.|- +.+.+.++++..+.++|+.++||| +.+.
T Consensus 179 av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~n 246 (277)
T PRK05742 179 AVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NEST 246 (277)
T ss_pred HHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHHH
Confidence 3667776542 33433 357899999999999999988542 345566666655558999999999 5899
Q ss_pred HHHHHHhCCCEEEEchHHH
Q 018919 274 VFKALALGASGIFIGRPVV 292 (349)
Q Consensus 274 v~kal~~GA~~V~ig~~~l 292 (349)
+.++.+.|+|.+.+|....
T Consensus 247 i~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHcCCCEEEEChhhc
Confidence 9999999999999998764
No 221
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.78 E-value=0.00094 Score=60.07 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=69.8
Q ss_pred HHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecCCCCCCC--CchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+...++..+-..++.. +-+.|++..+.+.|+|+|.++.-..+... ..+..++.+.++.+.. .+|+++-|||.. +
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~~-~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGINL-E 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCCH-H
Confidence 4444444444444443 35789999999999999998654444322 2233467777777765 599999999865 8
Q ss_pred HHHHHHHhCCCEEEEchHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.+.++.||++|.+-|+++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 999999999999999999885
No 222
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.78 E-value=0.0004 Score=64.79 Aligned_cols=86 Identities=27% Similarity=0.290 Sum_probs=66.6
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
..++++|+..+ .+|.+ .+.+.++++.|.++|+|+|.+.+- ..+.+.++.+.++.++|+.++||| +.
T Consensus 166 ~av~~~r~~~~~~~~Igv-ev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI-~~ 233 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEV-EVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGI-TL 233 (265)
T ss_pred HHHHHHHHhCCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCC-CH
Confidence 34888888764 33333 467899999999999999988652 235566666666446999999999 57
Q ss_pred HHHHHHHHhCCCEEEEchHH
Q 018919 272 TDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~ 291 (349)
+.+.+..+.|||++.+|..+
T Consensus 234 ~ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 234 DNLEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHHHcCCCEEEeCHHH
Confidence 99999999999999997654
No 223
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.78 E-value=0.0008 Score=58.98 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCcEE--EEEe---------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCc
Q 018919 193 DEDVKWLQTITKLPIL--VKGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 261 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~--vK~v---------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 261 (349)
.++|+.+|+.+++||| +|-. ++.++++.+.++|+|.|-+..+..... .+..+.+.++++. ...
T Consensus 21 ~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~---~~l 94 (192)
T PF04131_consen 21 VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEK---YQL 94 (192)
T ss_dssp HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHC---TSE
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHh---CcE
Confidence 3789999999999985 3421 466999999999999999987543211 2334556666553 245
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 262 VFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 262 via~GGI~~~~dv~kal~~GA~~V~i 287 (349)
++ ..|.|-+|...+..+|+|.|.-
T Consensus 95 ~M--ADist~ee~~~A~~~G~D~I~T 118 (192)
T PF04131_consen 95 VM--ADISTLEEAINAAELGFDIIGT 118 (192)
T ss_dssp EE--EE-SSHHHHHHHHHTT-SEEE-
T ss_pred Ee--eecCCHHHHHHHHHcCCCEEEc
Confidence 55 5589999999999999999853
No 224
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=97.76 E-value=0.014 Score=53.47 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=114.3
Q ss_pred hHHHHHHHHHcCCeEEecCCCC-------CCHHHHH----hhC-CCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 90 EYATARAASAAGTIMTLSSWST-------SSVEEVA----STG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~~-------~~~e~i~----~~~-~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
+..-.+.+.+.|..-.++|.-+ .+.+++. ... +++..+|++. .|.+.+.+.++++.+.+-. +.|.+
T Consensus 14 d~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~~-~d~~~m~~eA~~l~~~~~n-v~VKI 91 (236)
T TIGR02134 14 NLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVFA-DDLDEMEKEARYIASWGNN-VNVKI 91 (236)
T ss_pred CHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEec-CCHHHHHHHHHHHHhcCCC-eEEEE
Confidence 4556666777776666655411 1233322 222 3678899875 6777777777787777644 56655
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHH---HcC-CCEEEEe
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAV---QAG-AAGIIVS 232 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~---~~G-~d~I~v~ 232 (349)
.+... .... .+.++.+++. ++++-+-.+.++..+..+. .+| +++|..
T Consensus 92 P~T~~--------------------------~G~~~l~ai~~L~~~-GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yisp- 143 (236)
T TIGR02134 92 PVTNT--------------------------KGESTGPLIQKLSAD-GITLNVTALTTIEQVEKVCQSFTDGVPGIVSV- 143 (236)
T ss_pred CCcCc--------------------------ccchHHHHHHHHHHC-CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEE-
Confidence 43210 0111 4667777765 8999988899999988744 589 588766
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 233 NHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 233 ~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.-||--|.|......+.++.+.+. .+..|++.+ +|+..++.++..+||+.+-+.-.++..+.
T Consensus 144 -fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 144 -FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAHDILAKLP 207 (236)
T ss_pred -ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 334433444334445555554432 357788777 99999999999999999999988887664
No 225
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.72 E-value=0.00076 Score=60.36 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=87.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
.|.....+.+++++++|++.+-+++--. .| +| +-.+ .+.++++|+.+++|+=+-.
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg-----------~f-vp------------n~~~g~~~i~~i~~~~~~~~DvHL 64 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDG-----------HF-VP------------NLTFGPDIIKAIRKITDLPLDVHL 64 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBS-----------SS-SS------------SB-B-HHHHHHHHTTSSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeccc-----------cc-CC------------cccCCHHHHHHHhhcCCCcEEEEe
Confidence 4666778899999999999876554110 01 12 1123 5789999998889987666
Q ss_pred e-cCH-HHHHHHHHcCCCEEEEecC---------------CC---------CC----------CC-----------Cc--
Q 018919 212 V-LTA-EDARIAVQAGAAGIIVSNH---------------GA---------RQ----------LD-----------YV-- 242 (349)
Q Consensus 212 v-~~~-~~a~~a~~~G~d~I~v~~~---------------gg---------~~----------~~-----------~~-- 242 (349)
. .+| .-++...++|+|.|.+.-. |. +. .| +|
T Consensus 65 Mv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~ 144 (201)
T PF00834_consen 65 MVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQK 144 (201)
T ss_dssp ESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-
T ss_pred eeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCccc
Confidence 3 455 4577889999999988621 11 10 11 22
Q ss_pred --hhhHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 243 --PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 243 --~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+..++-+.++++.. +.++.|.+||||+. +.+.++.++|||.+.+||+++
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHh
Confidence 23455555555543 23699999999988 578788899999999999765
No 226
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.72 E-value=0.00038 Score=65.07 Aligned_cols=86 Identities=27% Similarity=0.291 Sum_probs=67.9
Q ss_pred HHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 195 DVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 195 ~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
.++.+|+..+ .+|.+ .+.+.++++.+.++|+|+|.+.+- ..+.+.++.+.++.++|+.+.||| +.+
T Consensus 171 ~v~~~r~~~~~~~~Igv-ev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ 238 (268)
T cd01572 171 AVRRARAAAPFTLKIEV-EVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLE 238 (268)
T ss_pred HHHHHHHhCCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHH
Confidence 4778888764 33333 457899999999999999998653 246677777666446999999999 579
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++.+.|+|++.+|+++.
T Consensus 239 ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 239 NIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHcCCCEEEEEeeec
Confidence 99999999999999998664
No 227
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.68 E-value=0.00048 Score=62.86 Aligned_cols=75 Identities=25% Similarity=0.310 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|++.+.+..-.+ ........++.+.++++.+ ++||+++|||++.+|+.+++..||+.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 34 NAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 667888889999998865432 1123345678888888876 79999999999999999999999999999998764
No 228
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.66 E-value=0.00084 Score=62.42 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=101.9
Q ss_pred ecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeec------CChhHHHHH
Q 018919 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVY------KDRNVVAQL 141 (349)
Q Consensus 69 ~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~------~~~~~~~~~ 141 (349)
.+++-+...|+.+ +-++ +..+.+.+. |...++.+.+. ++....... .+.++++... .+.......
T Consensus 28 a~DHG~~~Gp~~g--l~~~--~~~~~~i~~--~~da~~~~~G~--~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~s 99 (264)
T PRK08227 28 AFDHGYFQGPTTG--LERI--DINIAPLFP--YADVLMCTRGI--LRSVVPPATNKPVVLRASGGNSILKELSNEAVAVD 99 (264)
T ss_pred ECCCccccCCCcc--ccCh--HHHHHHHhh--cCCEEEeChhH--HHhcccccCCCcEEEEEcCCCCCCCCCCcccceec
Confidence 3445566666644 2233 334555554 44444432211 111111111 3466666432 112223344
Q ss_pred HHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHH---HHHHHHhcCCcEEEEEe------
Q 018919 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDED---VKWLQTITKLPILVKGV------ 212 (349)
Q Consensus 142 ~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~pv~vK~v------ 212 (349)
++.+.+.|++++.+++..-. ..+ .+.+++ +.+-.+.|++|+++ ..
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs--~~E-----------------------~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~ 153 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGS--EYE-----------------------HQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDM 153 (264)
T ss_pred HHHHHHCCCCEEEEEEecCC--HHH-----------------------HHHHHHHHHHHHHHHHhCCcEEE-EecCCCCc
Confidence 67788899999998885411 000 111223 44445568999987 33
Q ss_pred cCH-----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-HHHH----HHHHhCC
Q 018919 213 LTA-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVF----KALALGA 282 (349)
Q Consensus 213 ~~~-----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~----kal~~GA 282 (349)
.+. .-++.+.+.|||.|.+. +.+ +.+.++.+.+ .+||++.||=... +|++ .++..||
T Consensus 154 ~~~~~~ia~aaRiaaELGADiVK~~-------y~~----~~f~~vv~a~--~vPVviaGG~k~~~~~~L~~v~~ai~aGa 220 (264)
T PRK08227 154 VRDARYFSLATRIAAEMGAQIIKTY-------YVE----EGFERITAGC--PVPIVIAGGKKLPERDALEMCYQAIDEGA 220 (264)
T ss_pred CchHHHHHHHHHHHHHHcCCEEecC-------CCH----HHHHHHHHcC--CCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 111 22788999999999883 111 5667777765 7999999999853 3343 5777999
Q ss_pred CEEEEchHHH
Q 018919 283 SGIFIGRPVV 292 (349)
Q Consensus 283 ~~V~ig~~~l 292 (349)
.+|.+||-+.
T Consensus 221 ~Gv~~GRNIf 230 (264)
T PRK08227 221 SGVDMGRNIF 230 (264)
T ss_pred ceeeechhhh
Confidence 9999999554
No 229
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.65 E-value=0.00027 Score=64.86 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++.+.+.|++.+.+-...+. .......+..+.++.+.. .+|++++|||++.+|+.+++.+||+.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 37788899999999987543211 112244577888888766 7999999999999999999999999999999765
No 230
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.65 E-value=0.00071 Score=63.39 Aligned_cols=142 Identities=21% Similarity=0.206 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhc---CCCCcCcccccCCCCC--------CchHHHHHHHHHhcC-C
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF---TLPPFLTLKNFQGLDL--------GKMDEDVKWLQTITK-L 205 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~---~~p~~~~~~~~~~~~~--------~~~~~~i~~i~~~~~-~ 205 (349)
+.+.++.+++.+.+...++.--..+|.|.-..+.-+ ..+..+++....=..| .+..+.++.+|+..+ .
T Consensus 105 t~~~v~~~~~~~~~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnH~~~~g~~~~~~av~~~R~~~~~~ 184 (272)
T cd01573 105 TAEMVAAARAVNPDIVVATTRKAFPGTRKLALKAILAGGAVPHRLGLSETILVFAEHRAFLGGPEPLKALARLRATAPEK 184 (272)
T ss_pred HHHHHHHHhhcCCCcEEEEeCCCCccchHHHHHHHHhcCccccccCCCcceEeehhHHHHhCCchHHHHHHHHHHhCCCC
Confidence 344555555566666666655556677653332211 1111111110000001 001234777776653 3
Q ss_pred cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 206 PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 206 pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
+|.+ .+.+.+++..+.++|+|+|.+++- .+.. +.++.+.++ .++|++++||| +.+.+.++.+.|+
T Consensus 185 ~IgV-ev~t~eea~~A~~~gaD~I~ld~~-------~p~~---l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~Gv 252 (272)
T cd01573 185 KIVV-EVDSLEEALAAAEAGADILQLDKF-------SPEE---LAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAGA 252 (272)
T ss_pred eEEE-EcCCHHHHHHHHHcCCCEEEECCC-------CHHH---HHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcCC
Confidence 3322 357899999999999999998652 1222 233333322 26999999999 8899999999999
Q ss_pred CEEEEchHH
Q 018919 283 SGIFIGRPV 291 (349)
Q Consensus 283 ~~V~ig~~~ 291 (349)
|++.+|..+
T Consensus 253 d~I~vsai~ 261 (272)
T cd01573 253 DILVTSAPY 261 (272)
T ss_pred cEEEEChhh
Confidence 999777653
No 231
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.64 E-value=0.00067 Score=61.78 Aligned_cols=75 Identities=31% Similarity=0.438 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|++.+.+-.-.+. ..+....++.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 6678888999999988643331 123344678888888876 79999999999999999999999999999987763
No 232
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.63 E-value=0.0007 Score=63.50 Aligned_cols=88 Identities=24% Similarity=0.170 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++.+|+..+-..++. -+.+.++++.+.+.|+|+|.+.+ . ..+.+.++++.++.++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~-------~---~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN-------R---TPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC-------C---CHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 45888888765222222 35789999999999999998843 1 236667777666446889999999 779
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.+..+.|+|.+.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998765
No 233
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.63 E-value=0.00026 Score=64.69 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=57.3
Q ss_pred CH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 214 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 214 ~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++ +.|+...+. ++.+.+..--|. ..+.++.++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|++.+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 44 446666666 887776432221 123346788888888776 7999999999999999999999999999999765
No 234
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.63 E-value=0.00047 Score=62.91 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=52.7
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCC-cEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i-pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
-.|...+.+...++ .+.+...+.+.++++.+ +. ||++.|||++.+++.+++..|||+|.+|+.+..
T Consensus 152 ~~g~~~vYle~gs~---~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGG---AGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCC---CCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 35777776653322 24455678888888876 56 999999999999999999999999999999874
No 235
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.62 E-value=0.0033 Score=57.20 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=79.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec----CH
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL----TA 215 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~----~~ 215 (349)
+.++...++|++.|.+|..+.. ...+.++++|+. +.++-+.... ..
T Consensus 82 ~~i~~~~~aGad~It~H~Ea~~-----------------------------~~~~~l~~Ik~~-g~~~kaGlalnP~Tp~ 131 (228)
T PRK08091 82 EVAKACVAAGADIVTLQVEQTH-----------------------------DLALTIEWLAKQ-KTTVLIGLCLCPETPI 131 (228)
T ss_pred HHHHHHHHhCCCEEEEcccCcc-----------------------------cHHHHHHHHHHC-CCCceEEEEECCCCCH
Confidence 4677888999999999886421 113678888875 6644444442 34
Q ss_pred HHHHHHHHcCCCEEEEec-CCCC-CCCCchhhHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 216 EDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~-~gg~-~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
+..+..++. +|.|.+=. ..|. ....-+..++-+.++++.... ++.|-+||||+. +.+.++.++|||.+.+||+
T Consensus 132 ~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 132 SLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTL-ELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEEChh
Confidence 666666664 89887642 2221 112234455666666554422 577999999984 7888889999999999998
Q ss_pred HH
Q 018919 291 VV 292 (349)
Q Consensus 291 ~l 292 (349)
++
T Consensus 210 lF 211 (228)
T PRK08091 210 LF 211 (228)
T ss_pred hh
Confidence 54
No 236
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00042 Score=62.22 Aligned_cols=76 Identities=25% Similarity=0.285 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.|.|++..+.|||-+++-.-... .++....++.+.++++.+ -+|+...|||++.+|+.+.|.+|||-|.|.++.+.
T Consensus 33 VelA~~Y~e~GADElvFlDItAs-~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITAS-SEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccc-cccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 37799999999999986321110 112345678888888877 79999999999999999999999999999998764
No 237
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.61 E-value=0.00035 Score=64.04 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=60.8
Q ss_pred CH-HHHHHHHH-cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 214 TA-EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 214 ~~-~~a~~a~~-~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
++ +.|+...+ .|+|.+.+..-.+. ..+.+...+.+.++.+.+ .+||.+.|||+|.+|+.+++.+||+.|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 54 66777777 69999987643221 123456788899998876 799999999999999999999999999999976
Q ss_pred H
Q 018919 292 V 292 (349)
Q Consensus 292 l 292 (349)
+
T Consensus 109 ~ 109 (234)
T PRK13587 109 I 109 (234)
T ss_pred h
Confidence 5
No 238
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.56 E-value=0.00099 Score=58.45 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=57.8
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+-+.++++.+.+.|+|++.++.-..+.- +..+..++.+.++.+.. ++||++-||| +++++.++..+||++|.+-+
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 5688999999999999999975322221 12334577888888777 6999999999 67999999999999999987
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
++
T Consensus 179 aI 180 (180)
T PF02581_consen 179 AI 180 (180)
T ss_dssp HH
T ss_pred eC
Confidence 64
No 239
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.53 E-value=0.001 Score=61.84 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=60.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|++.+.+..-.+. .....+.++.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 6688899999999998753221 112345788888888875 79999999999999999999999999999997653
No 240
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.52 E-value=0.00035 Score=64.37 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.|+.-.+.|++.+.+-.- |++..+.+.++.+.+ .+||...||||+ +++.+++.+||+.|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57899999999999987532 334788999998877 699999999998 9999999999999999997763
No 241
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.51 E-value=0.00067 Score=61.97 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|++.+.+..-.+. ..+.+...+.+.++++.+ .+||.++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 6677788899999987532111 124456788899998887 69999999999999999999999999999998764
No 242
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.51 E-value=0.0073 Score=55.71 Aligned_cols=210 Identities=17% Similarity=0.185 Sum_probs=105.2
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEecCC---------CCC----C--------H---HHHHhhCC-CceE
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---------STS----S--------V---EEVASTGP-GIRF 126 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~---------~~~----~--------~---e~i~~~~~-~~~~ 126 (349)
.||+-+..+. + -.|+.+.+.|+.+++.-. ++. + . +|+....+ .|.+
T Consensus 15 ~pIig~gaGt-G--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAGT-G--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEESS-H--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeecc-c--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 5777777432 2 478999999999887311 110 0 1 23333333 4666
Q ss_pred EEEeecCChh-HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch---HHHHHHHHHh
Q 018919 127 FQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM---DEDVKWLQTI 202 (349)
Q Consensus 127 ~Ql~~~~~~~-~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~---~~~i~~i~~~ 202 (349)
+-+.. .||- .+...++++++.|+.++. |. |..|.-.-.+|+... . ..-.+ .+.|+..++.
T Consensus 86 aGv~a-tDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LE-e-----------~Gmgy~~EVemi~~A~~~ 149 (268)
T PF09370_consen 86 AGVCA-TDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLE-E-----------TGMGYDREVEMIRKAHEK 149 (268)
T ss_dssp EEE-T-T-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHH-H-----------TT--HHHHHHHHHHHHHT
T ss_pred EEecC-cCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHH-h-----------cCCCHHHHHHHHHHHHHC
Confidence 66665 4554 466789999999999974 33 433322222222110 0 00112 2334444443
Q ss_pred cCCcEEEEEecCHHHHHHHHHcCCCEEEEec---CCCC-CCCCchh---hHHHHHHHHHH---hcCC-CcEEEecCCCCH
Q 018919 203 TKLPILVKGVLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPA---TIMALEEVVKA---TQGR-IPVFLDGGVRRG 271 (349)
Q Consensus 203 ~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~---~gg~-~~~~~~~---~~~~l~~i~~~---~~~~-ipvia~GGI~~~ 271 (349)
++ +.+-.+.++++|+...++|+|.|+++- .||. ......+ ..+.+.++.++ ++.+ +.++-.|-|.++
T Consensus 150 -gl-~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p 227 (268)
T PF09370_consen 150 -GL-FTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATP 227 (268)
T ss_dssp -T--EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SH
T ss_pred -CC-eeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCH
Confidence 32 344456799999999999999999852 1332 1111221 22333444443 3334 556666779999
Q ss_pred HHHHHHHH--hCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 272 TDVFKALA--LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 272 ~dv~kal~--~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
+|+...+. -|+++..-|+.+=+ -.+++.+....++++
T Consensus 228 ~D~~~~l~~t~~~~Gf~G~Ss~ER-------lP~E~ai~~~~~~FK 266 (268)
T PF09370_consen 228 EDAQYVLRNTKGIHGFIGASSMER-------LPVERAITETVRAFK 266 (268)
T ss_dssp HHHHHHHHH-TTEEEEEESTTTTH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEecccchhh-------ccHHHHHHHHHHHhh
Confidence 99999998 36888887776522 234555555555554
No 243
>PRK08185 hypothetical protein; Provisional
Probab=97.48 E-value=0.075 Score=50.04 Aligned_cols=108 Identities=21% Similarity=0.301 Sum_probs=74.6
Q ss_pred CHHHHHHHHHc-CCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEEE
Q 018919 214 TAEDARIAVQA-GAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 286 (349)
Q Consensus 214 ~~~~a~~a~~~-G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V~ 286 (349)
++++|+...+. |+|.+.++. ||-.. .++.+ .++.|.++++.+ ++|+++=||+..+. ++.|++.+|..-|=
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~-~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYP-KDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCcccCCcC-CCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEE
Confidence 68888888875 999999864 33321 11122 478899998887 79999999997765 55568899999999
Q ss_pred EchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 287 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 287 ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++|.+..+... .. ..-.....+.+.+..+..|+.+|..
T Consensus 227 i~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 227 ISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred eChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543211 01 1123334456677777788888754
No 244
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.47 E-value=0.0014 Score=61.34 Aligned_cols=86 Identities=29% Similarity=0.277 Sum_probs=64.9
Q ss_pred HHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC--CCcEEEecCCCC
Q 018919 195 DVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRR 270 (349)
Q Consensus 195 ~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvia~GGI~~ 270 (349)
.++++|+..+ .+|.+ .+.+.+++..+.++|+|.|.+.+- . .+.+.++.+.++. ++||.++|||.
T Consensus 170 ~v~~~r~~~~~~~~I~v-ev~t~eea~~A~~~gaD~I~ld~~-------~---~e~l~~~v~~i~~~~~i~i~asGGIt- 237 (269)
T cd01568 170 AVKRARAAAPFEKKIEV-EVETLEEAEEALEAGADIIMLDNM-------S---PEELKEAVKLLKGLPRVLLEASGGIT- 237 (269)
T ss_pred HHHHHHHhCCCCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC-------C---HHHHHHHHHHhccCCCeEEEEECCCC-
Confidence 4788888764 33433 467899999999999999999652 1 2444555554433 78999999986
Q ss_pred HHHHHHHHHhCCCEEEEchHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.+.++.+.|||++.+|+.+.
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~~ 259 (269)
T cd01568 238 LENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHHc
Confidence 5899999999999999986553
No 245
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.46 E-value=0.0043 Score=55.98 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 259 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
..++|..||||+++.+.+...+|||.+.+|+.+..
T Consensus 191 ~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 191 DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 56999999999999998888899999999997753
No 246
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.45 E-value=0.018 Score=53.33 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=98.9
Q ss_pred HHHHHHcCCeEEe-cCCCCC------CHHH----------HHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEe
Q 018919 94 ARAASAAGTIMTL-SSWSTS------SVEE----------VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 94 a~aa~~~G~~~~~-~~~~~~------~~e~----------i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~ 156 (349)
+++..+.|+..++ ..+... .++. ++...+-|..+|+-. +|.. +.+..+...|++.|-++
T Consensus 34 a~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~-nd~~---aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 34 AMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLR-NDAV---AALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeec-CCCH---HHHHHHHHhCCCEEEEc
Confidence 4457788888775 333221 2222 222222357788755 3433 34556778899998654
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc--CCcEEEEEe---------cCH-HHHHHHHHc
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT--KLPILVKGV---------LTA-EDARIAVQA 224 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~v---------~~~-~~a~~a~~~ 224 (349)
+=+- .+..++| +.++.. ..+-+.|+.. ++.|+.-.. .+. +.++.+...
T Consensus 110 ~~~g-----------~~~~d~G--------~~~~~a-~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~ 169 (257)
T TIGR00259 110 VLTG-----------VYASDQG--------IIEGNA-GELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVER 169 (257)
T ss_pred cEee-----------eEecccc--------cccccH-HHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHh
Confidence 3211 0111111 122222 2333444443 344432211 123 557777777
Q ss_pred C-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 225 G-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 225 G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
| +|+|++++.+- +.+.+++.+.++++.. .+.|++..||+. ++.+.+++.. ||+|.+||.|=
T Consensus 170 ~~aDavivtG~~T----G~~~d~~~l~~vr~~~-~~~PvllggGvt-~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 170 GLADAVILSGKTT----GTEVDLELLKLAKETV-KDTPVLAGSGVN-LENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred cCCCEEEECcCCC----CCCCCHHHHHHHHhcc-CCCeEEEECCCC-HHHHHHHHhh-CCEEEECCCcc
Confidence 7 99999987531 3456788888887655 368999999975 5899999887 99999999764
No 247
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.41 E-value=0.00081 Score=61.58 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.|+...+.|+|.+.+..-.+. .+.+...+.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 36788888999999988643222 13456688888888876 6899999999999999999999999999999654
No 248
>PRK14057 epimerase; Provisional
Probab=97.41 E-value=0.0097 Score=54.95 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=82.2
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCc
Q 018919 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLP 206 (349)
Q Consensus 127 ~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~p 206 (349)
+.|.. .+|+ +.++...++|++.|.+|..+.. ...+.++++|+. +.+
T Consensus 80 vHLMV-~~P~---~~i~~~~~aGad~It~H~Ea~~-----------------------------~~~~~l~~Ir~~-G~k 125 (254)
T PRK14057 80 VHLMV-ADQW---TAAQACVKAGAHCITLQAEGDI-----------------------------HLHHTLSWLGQQ-TVP 125 (254)
T ss_pred EEeee-CCHH---HHHHHHHHhCCCEEEEeecccc-----------------------------CHHHHHHHHHHc-CCC
Confidence 34443 3454 4677788899999999987421 113568888875 442
Q ss_pred -------EEEEEe----cCHHHHHHHHHcCCCEEEEec-CCCC-CCCCchhhHHHHHHHHHHhc---CCCcEEEecCCCC
Q 018919 207 -------ILVKGV----LTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 270 (349)
Q Consensus 207 -------v~vK~v----~~~~~a~~a~~~G~d~I~v~~-~gg~-~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~ 270 (349)
+-+... ...+..+..++. +|.|.+=. ..|. ....-+..++-+.++++..+ .++.|-+||||..
T Consensus 126 ~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~ 204 (254)
T PRK14057 126 VIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ 204 (254)
T ss_pred cccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH
Confidence 222233 234666666665 88887642 2221 11123445555665555442 2578999999986
Q ss_pred HHHHHHHHHhCCCEEEEchHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.+.++.++|||.+.+||+++
T Consensus 205 -~ti~~l~~aGad~~V~GSalF 225 (254)
T PRK14057 205 -DQLPSLIAQGIDRVVSGSALF 225 (254)
T ss_pred -HHHHHHHHCCCCEEEEChHhh
Confidence 678888999999999999854
No 249
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.38 E-value=0.00091 Score=60.47 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=54.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
|..+...|...|.+. ..|. ....+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe-~SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 566777888888786 2221 235677777777652 68999999999999999999999999999999874
No 250
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.38 E-value=0.0036 Score=58.26 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec-CHHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL-TAED 217 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~-~~~~ 217 (349)
.+.++.++++|+-++..--..| .|+|..- ++. + +.+ .++|+++++.+++||+.|... ...+
T Consensus 20 ~eqa~iae~aga~avm~le~~p------~d~r~~g----gv~-R----~~~---p~~I~~I~~~V~iPVig~~kigh~~E 81 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVP------ADIRASG----GVA-R----MSD---PKMIKEIMDAVSIPVMAKVRIGHFVE 81 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCc------hhhHhcC----Cee-e----cCC---HHHHHHHHHhCCCCEEEEeeccHHHH
Confidence 4578889999998875311122 2333211 110 0 112 478999999999999988764 4789
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
|+.+.++|+|.|.-|.. - .|.-+.+..++..+ ++|++ .|++|-++++.++..|||.|.
T Consensus 82 a~~L~~~GvDiIDeTe~------l-rPade~~~~~K~~f--~vpfm--ad~~~l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 82 AQILEALGVDYIDESEV------L-TPADWTFHIDKKKF--KVPFV--CGARDLGEALRRINEGAAMIR 139 (287)
T ss_pred HHHHHHcCCCEEEccCC------C-CcHHHHHHHHHHHc--CCCEE--ccCCCHHHHHHHHHCCCCEEe
Confidence 99999999999953321 1 12334455554443 56666 679999999999999999874
No 251
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.36 E-value=0.063 Score=50.53 Aligned_cols=107 Identities=14% Similarity=0.235 Sum_probs=74.9
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 286 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V~ 286 (349)
.+|++|++.. +.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|++.-||=..+ +++.+++.+|+.-|=
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 4678876654 69999999874 5533 3332 478999998887 7999999988877 667779999999999
Q ss_pred EchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 287 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 287 ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543210 00 0113334456777777888888754
No 252
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.34 E-value=0.0025 Score=59.74 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=69.5
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.++++|+..+ .+|.| .+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++.+.++-++|||.-
T Consensus 182 ~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~~- 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRITP- 249 (281)
T ss_pred HHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCCH-
Confidence 55888887764 45655 578999999999999999999764 34666677776666789999999864
Q ss_pred HHHHHHHHhCCCEEEEchHHH
Q 018919 272 TDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l 292 (349)
+.+.++.+.|+|.+.+|....
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 888888889999999998654
No 253
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.32 E-value=0.0018 Score=58.84 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=45.5
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
=.|...|.+--..|+ .++.+ ..+.++++.+ .++|+|..|||||++++.+++..|||.|.+|+.|..
T Consensus 151 ~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 378888888542232 22322 3344455554 389999999999999999999999999999999875
No 254
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.30 E-value=0.0026 Score=58.26 Aligned_cols=74 Identities=22% Similarity=0.173 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.|+...+.|+|.+.+-.-.+.. +.+...+.+.++.+.. -.|+...|||++.+|+.+++.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 66888888999999886543321 3455678888887743 25999999999999999999999999999997653
No 255
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.30 E-value=0.0016 Score=58.39 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=52.0
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+..+...|++.|.+....|. ..+.+.+.+.++++.+ ++|++..||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45567789999988542232 1223467788888877 799999999999999999889999999987
No 256
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.28 E-value=0.0025 Score=59.97 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=69.0
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.++++|+..+ .+|.| .+.+.|+++.++++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||. .
T Consensus 185 ~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI~-~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNID-M 252 (290)
T ss_pred HHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCCC-H
Confidence 55888887764 45555 468999999999999999999763 3456666666666688999999986 4
Q ss_pred HHHHHHHHhCCCEEEEchHHH
Q 018919 272 TDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l 292 (349)
+.+.++...|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 888888889999999998664
No 257
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.28 E-value=0.0072 Score=56.24 Aligned_cols=118 Identities=21% Similarity=0.177 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecC-HH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLT-AE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~-~~ 216 (349)
.+.++.++++|+-++.+--..|. |+|..- + .-+.. .++|+.+++.+++||+-+.-.. ..
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~------~~~~~~----~---------v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~ 78 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPA------DIRAAG----G---------VARMADPKMIKEIMDAVSIPVMAKVRIGHFV 78 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCch------hhhhcC----C---------eeecCCHHHHHHHHHhCCCCeEEeeehhHHH
Confidence 45678899999988764222221 222110 1 11111 5889999999999999776543 68
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
+++.+.++|+|.|.-+.. -.| .-+.+..++... ++|++ .|++|-+++..+..+|||.|.
T Consensus 79 Ea~~L~eaGvDiIDaT~r------~rP-~~~~~~~iK~~~--~~l~M--AD~stleEal~a~~~Gad~I~ 137 (283)
T cd04727 79 EAQILEALGVDMIDESEV------LTP-ADEEHHIDKHKF--KVPFV--CGARNLGEALRRISEGAAMIR 137 (283)
T ss_pred HHHHHHHcCCCEEeccCC------CCc-HHHHHHHHHHHc--CCcEE--ccCCCHHHHHHHHHCCCCEEE
Confidence 999999999999953211 111 334555555443 56666 569999999999999999875
No 258
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.27 E-value=0.0026 Score=57.45 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcC----CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCC
Q 018919 193 DEDVKWLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 268 (349)
Q Consensus 193 ~~~i~~i~~~~~----~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 268 (349)
.+.|+.++++++ +.|.+..+.+.++++.+.++|+++|+- .+ . ..+.+. .+... ++|++ -|+
T Consensus 52 ~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs-P~------~---~~~v~~-~~~~~--~i~~i--PG~ 116 (213)
T PRK06552 52 SEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS-PS------F---NRETAK-ICNLY--QIPYL--PGC 116 (213)
T ss_pred HHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC-CC------C---CHHHHH-HHHHc--CCCEE--CCc
Confidence 677999998873 567788889999999999999999963 11 0 112222 22222 67776 599
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q 018919 269 RRGTDVFKALALGASGIFI 287 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~i 287 (349)
.|++++.+++.+|||.|.+
T Consensus 117 ~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 117 MTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999998
No 259
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.22 E-value=0.0034 Score=58.85 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
.+.++++|+..+ .+|.| .+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++++..+-++|||.
T Consensus 180 ~~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI~- 247 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNVN- 247 (281)
T ss_pred HHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCCC-
Confidence 455778887764 45555 578999999999999999999764 3455666666666678899999986
Q ss_pred HHHHHHHHHhCCCEEEEchHHH
Q 018919 271 GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.+.++...|+|.+.+|....
T Consensus 248 ~~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 248 LNTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHHhcCCCEEEeCcccc
Confidence 4888888889999999998654
No 260
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.20 E-value=0.0064 Score=52.90 Aligned_cols=91 Identities=24% Similarity=0.269 Sum_probs=64.5
Q ss_pred HHHHHHHHhcC-Cc-EEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 194 EDVKWLQTITK-LP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 194 ~~i~~i~~~~~-~p-v~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
+.++.+++..+ .+ |.+ .+.+.++++.++++|+|.|.+.|- .|..+..+.+..+..+.++.|.++|||.-
T Consensus 68 ~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~-------~~~~~~~~v~~l~~~~~~v~ie~SGGI~~- 138 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNM-------SPEDLKEAVEELRELNPRVKIEASGGITL- 138 (169)
T ss_dssp HHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES--------CHHHHHHHHHHHHHHTTTSEEEEESSSST-
T ss_pred HHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCc-------CHHHHHHHHHHHhhcCCcEEEEEECCCCH-
Confidence 45778887763 33 555 567899999999999999999763 23333222222234555799999999865
Q ss_pred HHHHHHHHhCCCEEEEchHHHH
Q 018919 272 TDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig~~~l~ 293 (349)
+.+.++...|+|.+.+|+....
T Consensus 139 ~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 139 ENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp TTHHHHHHTT-SEEEECHHHHS
T ss_pred HHHHHHHhcCCCEEEcChhhcC
Confidence 8888899999999999987653
No 261
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.19 E-value=0.0059 Score=62.22 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=67.2
Q ss_pred HHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 196 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 196 i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+...|+..+-..++.. +-+.+++..+.+.|+|+|.++.-..+.. +.-+..++.+.++.+.. ++||++-|||. .+
T Consensus 380 ~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~ 456 (502)
T PLN02898 380 VRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-AS 456 (502)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HH
Confidence 3555655433334433 4678999999999999999764222211 11122466777776654 79999999996 89
Q ss_pred HHHHHHHhCCC---EEEEchHHHH
Q 018919 273 DVFKALALGAS---GIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~---~V~ig~~~l~ 293 (349)
++.+++++||+ +|.+++.++.
T Consensus 457 ~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 457 NAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHHcCCCcCceEEEEeHHhc
Confidence 99999999999 9999999873
No 262
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.19 E-value=0.0024 Score=58.81 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.|+...+.|+|.+.+-.--+. ..+.+...+.+.++.+.+ .||...||||+.+|+.+++.+||+-|.+||..+
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 6688888999999987542221 124456788888888875 699999999999999999999999999999654
No 263
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.016 Score=51.40 Aligned_cols=111 Identities=20% Similarity=0.204 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEE--EEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPIL--VKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~--vK~ 211 (349)
+++.+..+++.+++.|+.+|-++ . .++|+.+++.+++||| +|-
T Consensus 31 ~~~iv~~mA~Aa~~gGAvgiR~~--g---------------------------------v~dIkai~~~v~vPIIGIiKr 75 (229)
T COG3010 31 SPEIVAAMALAAEQGGAVGIRIE--G---------------------------------VEDIKAIRAVVDVPIIGIIKR 75 (229)
T ss_pred chhHHHHHHHHHHhCCcceEeec--c---------------------------------hhhHHHHHhhCCCCeEEEEec
Confidence 45677778888888898876432 1 4789999999999985 332
Q ss_pred ---------ecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 212 ---------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 212 ---------v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
..+.++...+.++|++.|.+..+-.... .+ +++ ++.+..+ .--.++.-.++|.+|.+.|..+|+
T Consensus 76 d~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP-~~--~~~---~~i~~~k-~~~~l~MAD~St~ee~l~a~~~G~ 148 (229)
T COG3010 76 DYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRP-DG--DLE---ELIARIK-YPGQLAMADCSTFEEGLNAHKLGF 148 (229)
T ss_pred CCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCC-cc--hHH---HHHHHhh-cCCcEEEeccCCHHHHHHHHHcCC
Confidence 1456899999999999999976533222 22 332 2222221 223455566899999999999999
Q ss_pred CEEE
Q 018919 283 SGIF 286 (349)
Q Consensus 283 ~~V~ 286 (349)
|.|.
T Consensus 149 D~IG 152 (229)
T COG3010 149 DIIG 152 (229)
T ss_pred cEEe
Confidence 9874
No 264
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.18 E-value=0.015 Score=53.81 Aligned_cols=168 Identities=19% Similarity=0.152 Sum_probs=98.2
Q ss_pred HHHHHHcCCeEEec-CCCC------CCHHHH----------HhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEe
Q 018919 94 ARAASAAGTIMTLS-SWST------SSVEEV----------ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 94 a~aa~~~G~~~~~~-~~~~------~~~e~i----------~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~ 156 (349)
++...+.|+..++= .+.. ..+|.+ ++...-+..+|+-.+ |.. +.+..+...|++.+-++
T Consensus 35 a~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~n-d~~---aalaiA~A~ga~FIRv~ 110 (254)
T PF03437_consen 35 AEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRN-DPK---AALAIAAATGADFIRVN 110 (254)
T ss_pred HHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecC-CCH---HHHHHHHHhCCCEEEec
Confidence 45577888887753 2221 123332 222223577887653 433 34556677899987654
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCc--EEEEEe---------cCH-HHHHHH-HH
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLP--ILVKGV---------LTA-EDARIA-VQ 223 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~p--v~vK~v---------~~~-~~a~~a-~~ 223 (349)
.=+- .+..++| +.++.. ..+-+.|+..+.. |+.-.- .+. +.++.+ ..
T Consensus 111 ~~~g-----------~~~~d~G--------~~~~~a-~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~ 170 (254)
T PF03437_consen 111 VFVG-----------AYVTDEG--------IIEGCA-GELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVER 170 (254)
T ss_pred CEEc-----------eecccCc--------cccccH-HHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHh
Confidence 3210 0001111 222222 3344555555433 332111 123 445555 56
Q ss_pred cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 224 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.++|+|+|++.. .+.+++.+.+.++++.+ .+||++.+|+. .+.+.+.|.. ||++.|||.|-.
T Consensus 171 ~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 171 GGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred cCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeee
Confidence 889999997641 24467788899998887 39999999975 5888887765 999999998753
No 265
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.16 E-value=0.0028 Score=57.43 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=51.9
Q ss_pred cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 224 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 224 ~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.|...|.+--.||. +.+...+.+..+++.++ ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 67787777533332 33445677888877663 69999999999999999999999999999998874
No 266
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.15 E-value=0.021 Score=53.55 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=65.1
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---cCCCcEEEecCC
Q 018919 193 DEDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 268 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI 268 (349)
.+.++.+|+.. ..+|.| .+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.+ ..++.+-++|||
T Consensus 176 ~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI 244 (277)
T TIGR01334 176 GGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI 244 (277)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC
Confidence 45688888765 345554 467999999999999999999652 223344444443 347889999998
Q ss_pred CCHHHHHHHHHhCCCEEEEchHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
. .+.+.++...|+|.+.+|.++
T Consensus 245 ~-~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 N-PENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred C-HHHHHHHHhcCCCEEEeCcce
Confidence 6 588988888999999999874
No 267
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.14 E-value=0.0059 Score=55.75 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.|+.+++..++||++-+ +.+++++.++.+.|+|+|.+.
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5678888887889998876 689999999999999999884
No 268
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.14 E-value=0.013 Score=52.84 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=59.4
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCCCCCCC---CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+-+.+++..+.+.|+|++.++.-..+... ..+..++.+.++.+.. .++||++-|||. .+++.+.++.||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 35778899999999999999743222111 1223456666665542 269999999998 699999999999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 99873
No 269
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=97.13 E-value=0.13 Score=48.62 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=106.8
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-..-.+.++-..+.+-+.+.|+-+++ |++...+.+|..+ ..+ .+.++++.. .+.+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 46777887544444555566788888888976654 3334566665322 222 345566543 35667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.+.++.+++.|++++.+.- |.. . + .+++ ..+..+.+.+.+++||++=..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p--P~~-----------~-~-----------~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~ 139 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT--PYY-----------N-K-----------PTQEGLYQHFKAIAEATDLPIILYNVPGRT 139 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcC-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEECcccc
Confidence 78889999999999988632 210 0 0 0111 256677777778999987653
Q ss_pred ---cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++..+++.+.+ +-++.-+ ..+...+.++.+..++++.|+ .| ....++..+.+|+++++.|
T Consensus 140 g~~l~~~~~~~L~~~p~v~giK~s----------~~d~~~~~~~~~~~~~~~~v~-~G---~d~~~~~~l~~G~~G~is~ 205 (292)
T PRK03170 140 GVDILPETVARLAEHPNIVGIKEA----------TGDLERVSELIELVPDDFAVY-SG---DDALALPFLALGGVGVISV 205 (292)
T ss_pred CCCCCHHHHHHHHcCCCEEEEEEC----------CCCHHHHHHHHHhCCCCeEEE-EC---ChHhHHHHHHcCCCEEEEh
Confidence 4567777775432 2222221 112344444544443345444 33 1244667888999999988
Q ss_pred hHHH
Q 018919 289 RPVV 292 (349)
Q Consensus 289 ~~~l 292 (349)
...+
T Consensus 206 ~~n~ 209 (292)
T PRK03170 206 AANV 209 (292)
T ss_pred HHhh
Confidence 7644
No 270
>PRK06852 aldolase; Validated
Probab=97.12 E-value=0.011 Score=56.02 Aligned_cols=169 Identities=18% Similarity=0.090 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecC--------Chh-HHHHHHHHHHHcC------CCEEEE
Q 018919 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYK--------DRN-VVAQLVRRAERAG------FKAIAL 155 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~--------~~~-~~~~~~~~~~~~G------~~~i~i 155 (349)
.+.+.+.+.|+..++.+.+. ++......+ .+++++|.... ++. .....++.+.+.| ++++.+
T Consensus 63 ~~i~~~~~~g~dav~~~~G~--l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v 140 (304)
T PRK06852 63 HLFRIASKAKIGVFATQLGL--IARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGY 140 (304)
T ss_pred HHHHHHHhcCCCEEEeCHHH--HHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEE
Confidence 46677777777766543221 121111112 34566654311 221 2223466777777 789888
Q ss_pred ecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHH---HHHHhcCCcEEEEEe------c---CH----HHHH
Q 018919 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVK---WLQTITKLPILVKGV------L---TA----EDAR 219 (349)
Q Consensus 156 ~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~---~i~~~~~~pv~vK~v------~---~~----~~a~ 219 (349)
|+..-. .. +.+.++++. .-.+.|++|+++-.. . .+ .-++
T Consensus 141 ~v~~Gs--~~-----------------------E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaR 195 (304)
T PRK06852 141 TIYLGS--EY-----------------------ESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAG 195 (304)
T ss_pred EEecCC--HH-----------------------HHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHH
Confidence 875310 00 011133333 334558999986322 1 11 2368
Q ss_pred HHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-HHHH----HHHH-hCCCEEEEchHHH
Q 018919 220 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVF----KALA-LGASGIFIGRPVV 292 (349)
Q Consensus 220 ~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~----kal~-~GA~~V~ig~~~l 292 (349)
.+.+.|||.|.+--.+- .+....+.+.++.+.+ +.+||++.||=... +|++ .++. .||.+|.+||-+.
T Consensus 196 iaaELGADIVKv~y~~~----~~~g~~e~f~~vv~~~-g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIf 269 (304)
T PRK06852 196 VAACLGADFVKVNYPKK----EGANPAELFKEAVLAA-GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIH 269 (304)
T ss_pred HHHHHcCCEEEecCCCc----CCCCCHHHHHHHHHhC-CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 89999999999842210 0011245666677665 36899999998853 3444 4667 8999999999654
No 271
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.10 E-value=0.25 Score=46.27 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=109.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-.+-.+.++-..+.+-+.+.|+.+++ + ++...+.+|..+ ... .+.++++.. .+....
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHH
Confidence 5667777554444556667888888888876654 2 334456665322 222 344555533 344567
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.- |.. . + .+.+ ..+..+.+.+.+++|+++-..
T Consensus 82 i~~a~~a~~~Gad~v~v~p--P~y-----------~-~-----------~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg 136 (281)
T cd00408 82 IELARHAEEAGADGVLVVP--PYY-----------N-K-----------PSQEGIVAHFKAVADASDLPVILYNIPGRTG 136 (281)
T ss_pred HHHHHHHHHcCCCEEEECC--CcC-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEECccccC
Confidence 7888999999999998632 211 0 0 0112 256678888888999998654
Q ss_pred --cCHHHHHHHHHc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++..+++.+. .+-+|.-+. .....+.++.+..++++.|+. |. ...+...+.+|+++.+.|.
T Consensus 137 ~~l~~~~~~~L~~~~~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G~---d~~~~~~l~~G~~G~i~~~ 202 (281)
T cd00408 137 VDLSPETIARLAEHPNIVGIKDSS----------GDLDRLTRLIALLGPDFAVLS-GD---DDLLLPALALGADGAISGA 202 (281)
T ss_pred CCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-cc---hHHHHHHHHcCCCEEEehH
Confidence 457888877762 123333221 234455555555544555553 32 5677888999999999997
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
..+
T Consensus 203 ~n~ 205 (281)
T cd00408 203 ANV 205 (281)
T ss_pred Hhh
Confidence 543
No 272
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.10 E-value=0.057 Score=49.83 Aligned_cols=201 Identities=21% Similarity=0.204 Sum_probs=104.8
Q ss_pred CcceeEcCeecCcceee-cccccccccCChhhHHHHHHHHHcCCeEEecCC-CCCCHHHHHhhCCCceEEEEeecCChhH
Q 018919 60 DMNTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLSSW-STSSVEEVASTGPGIRFFQLYVYKDRNV 137 (349)
Q Consensus 60 d~s~~l~g~~~~~Pi~i-Apm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~-~~~~~e~i~~~~~~~~~~Ql~~~~~~~~ 137 (349)
++-..+.+.....+.++ .|.+.- +.+--..+|+.+++.|+.++.+.. .+ +. .+.-||=. ..+-
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~~kp-------Rt--s~~sf~G~---G~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGAYKP-------RT--SAASFQGL---GLQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecccCC-------CC--CCcccCCC---CHHH
Confidence 34444555555545444 444322 223345889999999998876432 11 11 22333311 2233
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCC-CcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cC
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP-PFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LT 214 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p-~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~ 214 (349)
...+.+..++.|...+. ++-.+ +.-+.-..+ .+ -++..++ -...+.++.+.+ ++.||++|.- .+
T Consensus 68 l~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-vdilqIgs~~------~~n~~LL~~va~-tgkPVilk~G~~~t 134 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-LDVIQVGARN------MQNFEFLKTLSH-IDKPILFKRGLMAT 134 (250)
T ss_pred HHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-CCEEEECccc------ccCHHHHHHHHc-cCCeEEEeCCCCCC
Confidence 34444555566776653 11111 111111111 00 0000011 111466777665 5999999975 46
Q ss_pred HHH----HHHHHHcCCCEEEEecCCCCCCCCc---hhhHHHHHHHHHHhcCCCcEEEecCCCCHH-------HHHHHHHh
Q 018919 215 AED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLDGGVRRGT-------DVFKALAL 280 (349)
Q Consensus 215 ~~~----a~~a~~~G~d~I~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-------dv~kal~~ 280 (349)
+++ ++...+.|..-|++--.|-+....- ...+..++.+++.. ++||+++-. +++. -...|+++
T Consensus 135 ~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~S-Hs~G~r~~v~~~a~AAvA~ 211 (250)
T PRK13397 135 IEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVS-HSTGRRDLLLPAAKIAKAV 211 (250)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCC-CCCcccchHHHHHHHHHHh
Confidence 665 4455668887666643233221111 33456677776655 699999844 4333 35568889
Q ss_pred CCCEEEEchHH
Q 018919 281 GASGIFIGRPV 291 (349)
Q Consensus 281 GA~~V~ig~~~ 291 (349)
|||+++|-+-+
T Consensus 212 GAdGl~IE~H~ 222 (250)
T PRK13397 212 GANGIMMEVHP 222 (250)
T ss_pred CCCEEEEEecC
Confidence 99999998854
No 273
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.09 E-value=0.0053 Score=56.92 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
.+.|+.-.+.|++.+.|---+| +.+...+.+.++++ + .+||-..||||+ +++.++|.+||+-|.+||..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 3778999999999988754322 23445788888887 5 599999999997 9999999999999999997764
No 274
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.09 E-value=0.01 Score=58.72 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=66.0
Q ss_pred HHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecCCCCC---CCCchhhHHHHHHHHHHhc-------CCCcEEEe
Q 018919 197 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQ-------GRIPVFLD 265 (349)
Q Consensus 197 ~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~gg~~---~~~~~~~~~~l~~i~~~~~-------~~ipvia~ 265 (349)
..+|+..+--.+++.. -+.+++.+|.+.|+|+|.++.--.+. ....+-.++.+.++++.+. .++||++-
T Consensus 291 ~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI 370 (437)
T PRK12290 291 ANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI 370 (437)
T ss_pred hhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE
Confidence 3444443322344333 46789999999999999986422221 1122234566666655542 26999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 266 GGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 266 GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
||| +.+++.+.++.||++|.+=|+++.
T Consensus 371 GGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 371 GGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 999 779999999999999999999874
No 275
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.08 E-value=0.0052 Score=54.39 Aligned_cols=81 Identities=28% Similarity=0.286 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.++.+++.++ +.+....+.+.+.+..+.++|+|+|...+ . ..+ +.+.++.. +++++. |+.|.
T Consensus 43 ~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~-------~~~-~~~~~~~~--~~~~i~--gv~t~ 107 (190)
T cd00452 43 LEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---L-------DPE-VVKAANRA--GIPLLP--GVATP 107 (190)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---C-------CHH-HHHHHHHc--CCcEEC--CcCCH
Confidence 567999999885 77777778899999999999999996421 1 112 22333333 567765 88999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 018919 272 TDVFKALALGASGIFIG 288 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig 288 (349)
+++.+++.+|||.|.+-
T Consensus 108 ~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 108 TEIMQALELGADIVKLF 124 (190)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999999983
No 276
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.08 E-value=0.005 Score=58.08 Aligned_cols=87 Identities=25% Similarity=0.280 Sum_probs=67.7
Q ss_pred HHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++++|+.. ..||.| .+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||.- +
T Consensus 197 ~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~~-~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVTL-E 264 (296)
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCCH-H
Confidence 4577777665 356554 578899999999999999998763 23566666666666899999999864 8
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++-..|+|.+.+|.+..
T Consensus 265 ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 265 TLREFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 88888889999999998654
No 277
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=97.08 E-value=0.0076 Score=58.21 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=73.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCc-ccccCCCCCCchHHHHHHHHHhcCCcEEEEEec------
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT-LKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL------ 213 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~------ 213 (349)
-++++.+.|++++-+++..- |+... +.. ....+...+..-++.+++|+++-.+.
T Consensus 111 sve~a~~~GAdAVk~lv~~~---------------~d~~~~~~~----~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~ 171 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYR---------------PDEDDAIND----RKHAFVERVGAECRANDIPFFLEPLTYDGKGS 171 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeC---------------CCcchHHHH----HHHHHHHHHHHHHHHcCCceEEEEeccCCCcc
Confidence 36788999999987776421 10000 000 00001233334445579998884321
Q ss_pred ----------CH----HHHHHHHH--cCCCEEEEecCCCC----CCC------CchhhHHHHHHHHHHhcCCCcEEE-ec
Q 018919 214 ----------TA----EDARIAVQ--AGAAGIIVSNHGAR----QLD------YVPATIMALEEVVKATQGRIPVFL-DG 266 (349)
Q Consensus 214 ----------~~----~~a~~a~~--~G~d~I~v~~~gg~----~~~------~~~~~~~~l~~i~~~~~~~ipvia-~G 266 (349)
.+ +-++.+.+ +|+|.+.+--.+.- ..+ ......+...++.+.. .+|++. +|
T Consensus 172 ~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsg 249 (340)
T PRK12858 172 DKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSA 249 (340)
T ss_pred ccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECC
Confidence 11 23566774 99999998522110 001 1111234566666654 577666 77
Q ss_pred CCCCHHHHHH----HHHhCC--CEEEEchHHHH
Q 018919 267 GVRRGTDVFK----ALALGA--SGIFIGRPVVY 293 (349)
Q Consensus 267 GI~~~~dv~k----al~~GA--~~V~ig~~~l~ 293 (349)
|. +.++..+ ++..|| ++|.+||....
T Consensus 250 G~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq 281 (340)
T PRK12858 250 GV-SPELFRRTLEFACEAGADFSGVLCGRATWQ 281 (340)
T ss_pred CC-CHHHHHHHHHHHHHcCCCccchhhhHHHHh
Confidence 76 6666655 556899 99999998754
No 278
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.07 E-value=0.026 Score=50.99 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=78.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE---
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV--- 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v--- 209 (349)
.+.....+.++++.+.|+.++.+ ++ .+.++++++..++|++.
T Consensus 24 ~~~~~i~~~a~~~~~~G~~~~~~--~~---------------------------------~~~~~~i~~~~~iPil~~~~ 68 (219)
T cd04729 24 HSPEIMAAMALAAVQGGAVGIRA--NG---------------------------------VEDIRAIRARVDLPIIGLIK 68 (219)
T ss_pred CcHHHHHHHHHHHHHCCCeEEEc--CC---------------------------------HHHHHHHHHhCCCCEEEEEe
Confidence 35567788899999999987652 22 25678888778999863
Q ss_pred EEe--------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC
Q 018919 210 KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 210 K~v--------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G 281 (349)
|.. .+.++++.+.++|+|.|.+.....+ ...+....+.+.++++.. +++++. ++.+.+++.++..+|
T Consensus 69 ~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~iiv--~v~t~~ea~~a~~~G 143 (219)
T cd04729 69 RDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLLMA--DISTLEEALNAAKLG 143 (219)
T ss_pred cCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeEEE--ECCCHHHHHHHHHcC
Confidence 332 1346899999999998877432111 011112334455555442 577776 689999999999999
Q ss_pred CCEEEEc
Q 018919 282 ASGIFIG 288 (349)
Q Consensus 282 A~~V~ig 288 (349)
+|.+.+.
T Consensus 144 ~d~i~~~ 150 (219)
T cd04729 144 FDIIGTT 150 (219)
T ss_pred CCEEEcc
Confidence 9998664
No 279
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.05 E-value=0.0091 Score=54.60 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++.+++..++||++-+ +.+++++.++.+.|+|+|.+.
T Consensus 164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4668888887789998865 689999999999999999984
No 280
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=97.04 E-value=0.026 Score=51.12 Aligned_cols=163 Identities=17% Similarity=0.089 Sum_probs=87.4
Q ss_pred HHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch
Q 018919 114 VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (349)
Q Consensus 114 ~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~ 192 (349)
++++++..+ .+.+.-|-. .|...+... .+.++|++.+.+|..+. ...
T Consensus 47 i~~lk~~~~~~~v~~DLK~-~Di~~~v~~--~~~~~Gad~vTvH~~a~-----------------------------~~~ 94 (216)
T PRK13306 47 VRVLRALYPDKIIVADTKI-ADAGKILAK--MAFEAGADWVTVICAAH-----------------------------IPT 94 (216)
T ss_pred HHHHHHHCCCCEEEEEEee-cCCcHHHHH--HHHHCCCCEEEEeCCCC-----------------------------HHH
Confidence 556666544 334444432 355543332 36788999998876331 111
Q ss_pred -HHHHHHHHHhcCCcEEEEEe--cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCC
Q 018919 193 -DEDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 269 (349)
Q Consensus 193 -~~~i~~i~~~~~~pv~vK~v--~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 269 (349)
.+.++.+++ .+.-+.+-.. .+.+.++...+.|.+-+++.-.---++++.......+..+++..+.+..+.++|||+
T Consensus 95 i~~~~~~~~~-~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~ 173 (216)
T PRK13306 95 IKAALKVAKE-FNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLV 173 (216)
T ss_pred HHHHHHHHHH-cCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 123444343 3443333222 345667666777776665531111123333333344455555443355699999999
Q ss_pred CHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 270 RGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
-.. +.+....|||.+.+|||+.. .+...+.++.++++++.
T Consensus 174 ~~~-~~~~~~~~ad~~VvGr~I~~------a~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 174 VED-LKLFKGIPVKTFIAGRAIRG------AADPAAAARAFKDEIAK 213 (216)
T ss_pred Hhh-HHHHhcCCCCEEEECCcccC------CCCHHHHHHHHHHHHHh
Confidence 532 22234459999999999653 22244566777777644
No 281
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0089 Score=53.20 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
.+.+-.+.+..+.--.| .+.+.++..++++.|+..|-+.|..-..+... +.....+.+..+.++-+++-+||.|++
T Consensus 175 lk~l~k~~K~L~me~LV-EVn~~eEm~raleiGakvvGvNNRnL~sFeVD---lstTskL~E~i~kDvilva~SGi~tpd 250 (289)
T KOG4201|consen 175 LKELYKISKDLGMEPLV-EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVD---LSTTSKLLEGIPKDVILVALSGIFTPD 250 (289)
T ss_pred HHHHHHHHHHcCCccee-eeccHHHHHHHHHhCcEEEeecCCccceeeec---hhhHHHHHhhCccceEEEeccCCCCHH
Confidence 44555556656543222 46788999999999999988876543322222 222334444455688999999999999
Q ss_pred HHHHHHHhCCCEEEEchHHHH
Q 018919 273 DVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l~ 293 (349)
|+.++-..|..+|.+|..++.
T Consensus 251 Dia~~q~~GV~avLVGEslmk 271 (289)
T KOG4201|consen 251 DIAKYQKAGVKAVLVGESLMK 271 (289)
T ss_pred HHHHHHHcCceEEEecHHHHh
Confidence 999999999999999999986
No 282
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.02 E-value=0.0076 Score=56.77 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=65.9
Q ss_pred HHHHHHHHhc-CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHH---hcCCCcEEEecCCC
Q 018919 194 EDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 269 (349)
Q Consensus 194 ~~i~~i~~~~-~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipvia~GGI~ 269 (349)
+.++++|+.. ..||.| .+.+.+++..++++|+|.|.+.|- . .+.+.++.+. .+.++.+.++|||.
T Consensus 188 ~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDnm-------~---~e~vk~av~~~~~~~~~v~ieaSGGI~ 256 (289)
T PRK07896 188 AALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDNF-------P---VWQTQEAVQRRDARAPTVLLESSGGLT 256 (289)
T ss_pred HHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCCC-------C---HHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 4577887765 356655 568999999999999999999763 1 3334444433 34578999999986
Q ss_pred CHHHHHHHHHhCCCEEEEchHHH
Q 018919 270 RGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.+.++..+|+|.+.+|.++.
T Consensus 257 -~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 257 -LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred -HHHHHHHHhcCCCEEEeChhhc
Confidence 4888888889999999998765
No 283
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.02 E-value=0.029 Score=50.75 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV- 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v- 212 (349)
+++...++++.+.++|+.++.+ +. .+.++.+++.+++|++....
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~--~~---------------------------------~~~i~~i~~~~~~Pil~~~~~ 65 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRA--NG---------------------------------VEDIKAIRAVVDVPIIGIIKR 65 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEc--CC---------------------------------HHHHHHHHHhCCCCEEEEEec
Confidence 4456778888888899877653 21 36788888888999873321
Q ss_pred ----------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 213 ----------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 213 ----------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
.+.++++.+.++|+|.|++...-.... .+....+.+.++++. ..++++. ++.+.+++.++..+|+
T Consensus 66 d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i~vi~--~v~t~ee~~~a~~~G~ 140 (221)
T PRK01130 66 DYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQLLMA--DCSTLEEGLAAQKLGF 140 (221)
T ss_pred CCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCCeEEE--eCCCHHHHHHHHHcCC
Confidence 235789999999999888753211000 011123444444432 3677774 5789999999999999
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
|.+.++
T Consensus 141 d~i~~~ 146 (221)
T PRK01130 141 DFIGTT 146 (221)
T ss_pred CEEEcC
Confidence 999774
No 284
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.01 E-value=0.0041 Score=57.35 Aligned_cols=73 Identities=29% Similarity=0.202 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.++...+.|++.+.+.---+. .+.+...+.+.++.+.+ .+|+.++|||||.+|+.+++.+||+-|.+||..+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 4455667788888877532221 13455678899998877 6999999999999999999999999999999755
No 285
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=97.01 E-value=0.0086 Score=57.49 Aligned_cols=175 Identities=20% Similarity=0.146 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCeEEecCCCCCCHHHHHhhC--CCceEEEEeecC-------ChhHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018919 92 ATARAASAAGTIMTLSSWSTSSVEEVASTG--PGIRFFQLYVYK-------DRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~~~~~~e~i~~~~--~~~~~~Ql~~~~-------~~~~~~~~~~~~~~~G~~~i~i~~d~p~~ 162 (349)
.+.+.+.+.|+..++.+.+. ++...... ..++++++-... .......-++.+.+.|++++.+|+..-.
T Consensus 95 ~~i~~a~~~g~dAv~~~~G~--l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs- 171 (348)
T PRK09250 95 NIVKLAIEAGCNAVASTLGV--LEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGS- 171 (348)
T ss_pred HHHHHHHhcCCCEEEeCHHH--HHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCC-
Confidence 46677777787766543221 22211111 134666654321 1122234477888899999998885310
Q ss_pred CchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH---HHhcCCcEEEEEe------cC-------H----HHHHHHH
Q 018919 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL---QTITKLPILVKGV------LT-------A----EDARIAV 222 (349)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i---~~~~~~pv~vK~v------~~-------~----~~a~~a~ 222 (349)
.. +.+.++++.++ .+.|++|+++=.. .+ + .-++.+.
T Consensus 172 -~~-----------------------E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaa 227 (348)
T PRK09250 172 -EE-----------------------SRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAA 227 (348)
T ss_pred -HH-----------------------HHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHH
Confidence 00 01113333333 3457999887322 11 1 1268899
Q ss_pred HcCCCEEEEecCCC----------CC------CCCchhhHHHHHHHHHHh-cCCCcEEEecCCCCH-HHH----HHH---
Q 018919 223 QAGAAGIIVSNHGA----------RQ------LDYVPATIMALEEVVKAT-QGRIPVFLDGGVRRG-TDV----FKA--- 277 (349)
Q Consensus 223 ~~G~d~I~v~~~gg----------~~------~~~~~~~~~~l~~i~~~~-~~~ipvia~GGI~~~-~dv----~ka--- 277 (349)
+.|||.|.+--.+. +. ........+.++.+.+.+ .+++||+..||=... +|+ ..+
T Consensus 228 ELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~ 307 (348)
T PRK09250 228 TIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVIN 307 (348)
T ss_pred HHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999853221 00 001112345566666665 347999999999853 333 356
Q ss_pred HHhCCCEEEEchHHHH
Q 018919 278 LALGASGIFIGRPVVY 293 (349)
Q Consensus 278 l~~GA~~V~ig~~~l~ 293 (349)
+..||.+|.+||-...
T Consensus 308 i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 308 KRAGGMGLIIGRKAFQ 323 (348)
T ss_pred hhcCCcchhhchhhhc
Confidence 7789999999996553
No 286
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=96.99 E-value=0.24 Score=46.99 Aligned_cols=181 Identities=16% Similarity=0.129 Sum_probs=108.5
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+.+-..+.|+.+++ |++...+.+|..+ ... -+.+.+... .+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 47788888654444555556778888888876543 2334566666322 122 234555543 35556
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhc-CCcEEEEEe---
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTIT-KLPILVKGV--- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~-~~pv~vK~v--- 212 (349)
..++++.+++.|++++.+.- |.. .+. +.+ ..+..+.+.+.+ ++||++=.+
T Consensus 84 ai~~a~~A~~~Gad~v~v~p--P~y------------~~~-----------~~~~l~~~f~~ia~a~~~lpv~iYn~P~~ 138 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV--PYY------------NKP-----------NQEALYDHFAEVADAVPDFPIIIYNIPGR 138 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC--ccC------------CCC-----------CHHHHHHHHHHHHHhccCCCEEEEeCchh
Confidence 77888999999999987632 210 010 111 256688888888 899987654
Q ss_pred ----cCHHHHHHHHH--cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 213 ----LTAEDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 213 ----~~~~~a~~a~~--~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
.+++...++.+ -.+-+|.-+. ..+..+.++.+..+.++.|+. |. ...++.++.+||++.+
T Consensus 139 tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G~---d~~~~~~l~~Ga~G~i 204 (294)
T TIGR02313 139 AAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-GI---ELLCLPMLAIGAAGSI 204 (294)
T ss_pred cCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-cc---hHHHHHHHHCCCCEEE
Confidence 35677777764 2344444321 123444455554444554543 31 2556678889999999
Q ss_pred EchHHH
Q 018919 287 IGRPVV 292 (349)
Q Consensus 287 ig~~~l 292 (349)
.|..-+
T Consensus 205 s~~~n~ 210 (294)
T TIGR02313 205 AATANV 210 (294)
T ss_pred ecHHhh
Confidence 988543
No 287
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.98 E-value=0.34 Score=45.70 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=75.6
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|++.=||=..+ +++.|++.+|..-|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCc---CCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4688887765 58999999874 4432 3333 578899998887 7999999988777 67778999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 231 NVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543211 00 1223344556677777778777754
No 288
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=96.96 E-value=0.037 Score=52.06 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCcEEEecCC
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 268 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI 268 (349)
.+.++.+|+..+ .+|.| .+.+.++++.++++|+|.|.+.|- . .+.+.++.+.++ .++.+-++|||
T Consensus 177 ~~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~LDn~-------~---~e~l~~av~~~~~~~~~~~leaSGGI 245 (284)
T PRK06096 177 SGAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQLDKF-------S---PQQATEIAQIAPSLAPHCTLSLAGGI 245 (284)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEECCC-------C---HHHHHHHHHHhhccCCCeEEEEECCC
Confidence 345777877653 44544 567999999999999999999653 2 344444444432 47899999998
Q ss_pred CCHHHHHHHHHhCCCEEEEchH
Q 018919 269 RRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~ 290 (349)
. .+.+.++...|+|.+.+|.+
T Consensus 246 ~-~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 N-LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred C-HHHHHHHHhcCCCEEEECcc
Confidence 6 58888888899999999876
No 289
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=96.94 E-value=0.28 Score=46.12 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=105.7
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------h-CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~-~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-+++ + ++...+.+|..+ . .. .+.++++.. .+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHH
Confidence 35667777544334445556777777788876654 2 223456555322 1 22 345555532 35566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+.- |.. . + .+++- .+..+.+.+.+++||++=..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p--P~y-----------~-~-----------~~~~~i~~~~~~i~~~~~~pi~lYn~P~~t 136 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT--PYY-----------N-K-----------PTQEGLYQHFKAIAEEVDLPIILYNVPSRT 136 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC--CcC-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEECcHHh
Confidence 78889999999999998643 211 0 0 01122 56677888888999987654
Q ss_pred ---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 ---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 ---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++..+++.+.. ..+-+ .++. ..+..+.++.+..++++.|+... ..-.+..+.+||++.+.|.
T Consensus 137 g~~l~~~~l~~L~~~~-~v~gi-------K~s~-~d~~~~~~l~~~~~~~~~v~~G~----d~~~~~~~~~G~~G~i~~~ 203 (285)
T TIGR00674 137 GVSLYPETVKRLAEEP-NIVAI-------KEAT-GNLERISEIKAIAPDDFVVLSGD----DALTLPMMALGGKGVISVT 203 (285)
T ss_pred cCCCCHHHHHHHHcCC-CEEEE-------EeCC-CCHHHHHHHHHhcCCCeEEEECc----hHHHHHHHHcCCCEEEehH
Confidence 4567777777643 22212 0111 12344555555554455555332 2456678899999999887
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
..+
T Consensus 204 ~~~ 206 (285)
T TIGR00674 204 ANV 206 (285)
T ss_pred HHh
Confidence 654
No 290
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.94 E-value=0.021 Score=51.43 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=77.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE--EEec-----
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV--KGVL----- 213 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v--K~v~----- 213 (349)
.++.+.++|++.+.+|..+.. ......++.+++ .+.++.+ +...
T Consensus 72 ~~~~~~~~gad~vtvh~e~g~----------------------------~~l~~~i~~~~~-~g~~~~v~~~~~~~~~~~ 122 (215)
T PRK13813 72 ICEAVFEAGAWGIIVHGFTGR----------------------------DSLKAVVEAAAE-SGGKVFVVVEMSHPGALE 122 (215)
T ss_pred HHHHHHhCCCCEEEEcCcCCH----------------------------HHHHHHHHHHHh-cCCeEEEEEeCCCCCCCC
Confidence 346677899999888765310 001234555554 4666644 2110
Q ss_pred C-----HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEEEE
Q 018919 214 T-----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFI 287 (349)
Q Consensus 214 ~-----~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V~i 287 (349)
. ...++.+.+.|+++..+..+ ..+-+.++++..+.++.+ .+|||+... ++.+++..|||.+.+
T Consensus 123 ~~~~~~~~v~~m~~e~G~~g~~~~~~----------~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~ 191 (215)
T PRK13813 123 FIQPHADKLAKLAQEAGAFGVVAPAT----------RPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIV 191 (215)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEECCC----------cchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEE
Confidence 0 02245677899998876321 234455555554333444 999999863 677888899999999
Q ss_pred chHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 288 GRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 288 g~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
||+++.+ ....+.++.++++++
T Consensus 192 Gr~I~~~------~d~~~~~~~l~~~~~ 213 (215)
T PRK13813 192 GRSIYNA------ADPREAAKAINEEIR 213 (215)
T ss_pred CcccCCC------CCHHHHHHHHHHHHh
Confidence 9986531 124456666666654
No 291
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.91 E-value=0.078 Score=52.17 Aligned_cols=210 Identities=18% Similarity=0.132 Sum_probs=105.7
Q ss_pred ceeEcCeecCcceeecccccccccCCh-----hhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCC--
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMAHPE-----GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD-- 134 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~~~~-----~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~-- 134 (349)
..+|.++++++-|+.|||+.....+++ ...++-+.-++.|+.+++++....+... .....+...|+-...+
T Consensus 4 P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~--~~~~~~~~~~~~~~~~~~ 81 (382)
T cd02931 4 PIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEI--EQFPMPSLPCPTYNPTAF 81 (382)
T ss_pred CeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcc--cccCCCCccccccCCHHH
Confidence 367888999999999999632222222 2345555566678888776543221110 0000011112211111
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhH-Hhh--hhcCCCCcCcccccCCCCCC-ch-HHHHHHHHHhcCCcEEE
Q 018919 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIK--NRFTLPPFLTLKNFQGLDLG-KM-DEDVKWLQTITKLPILV 209 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~-d~~--~~~~~p~~~~~~~~~~~~~~-~~-~~~i~~i~~~~~~pv~v 209 (349)
.+...++++.+.+.|+.++ +-+.+. .|.... ... .....|..+..+.. ....+ .+ .++|+++.+.+
T Consensus 82 i~~~k~l~davh~~G~~i~-~QL~H~-~Gr~~~~~~~~~~~~~~ps~~~~~~~-~~~~p~~mt~~eI~~ii~~f------ 152 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIF-LQLTAG-FGRVCIPGFLGEDKPVAPSPIPNRWL-PEITCRELTTEEVETFVGKF------ 152 (382)
T ss_pred hHHHHHHHHHHHHcCCEEE-EEccCc-CCCccCccccCCCCccCCCCCCCCcC-CCCCCCcCCHHHHHHHHHHH------
Confidence 2345677777788898764 344321 011110 000 00000111000000 00112 23 56677777654
Q ss_pred EEecCHHHHHHHHHcCCCEEEEec-C-CCC--C-----------CCCch------hhHHHHHHHHHHhcCCCcEEE----
Q 018919 210 KGVLTAEDARIAVQAGAAGIIVSN-H-GAR--Q-----------LDYVP------ATIMALEEVVKATQGRIPVFL---- 264 (349)
Q Consensus 210 K~v~~~~~a~~a~~~G~d~I~v~~-~-gg~--~-----------~~~~~------~~~~~l~~i~~~~~~~ipvia---- 264 (349)
.+-|++|.++|+|+|-+.. | |.- | -++|. -.++.+.+|++.++.+++|..
T Consensus 153 -----~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 153 -----GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred -----HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 3668999999999999975 4 431 1 11331 134666667766654555544
Q ss_pred ------------------ecCCCCHHH---HHHHHH-hCCCEEEEc
Q 018919 265 ------------------DGGVRRGTD---VFKALA-LGASGIFIG 288 (349)
Q Consensus 265 ------------------~GGI~~~~d---v~kal~-~GA~~V~ig 288 (349)
.||. +.+| +++.|+ .|+|.+-+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 228 KSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred hhhccccccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeC
Confidence 2232 3344 556665 799999875
No 292
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.91 E-value=0.35 Score=45.40 Aligned_cols=107 Identities=26% Similarity=0.366 Sum_probs=73.2
Q ss_pred cCHHHHHHHHH-cCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEE
Q 018919 213 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~~-~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V 285 (349)
.+|++|+...+ .|+|.+-++. ||... .+.+ .++.|.++.+.+ ++|++.=||=..+. ++.+++..|..-|
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~--~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 223 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYK--GGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKI 223 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 45888877664 7999999874 55432 1133 578999999988 79999999888875 4778999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~ 323 (349)
=++|.+..+... .. ..-.....+.+.+.++..|..+|.
T Consensus 224 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 224 NINTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999987654321 00 011233344556666666666654
No 293
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.90 E-value=0.29 Score=46.18 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=71.6
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|++.=||=..+ +++.|++.+|..-|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMY---KGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4678887765 58999999874 5543 2322 578899999887 6888877665444 56777999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++..+..|+.+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 230 NVATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 00 0113334455666667777777643
No 294
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.90 E-value=0.0087 Score=66.84 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=88.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia-~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++|..|++.|+..|++|..+-.......|.+-++..+..++ +.++.||+ +|.+++.-|++..+..||++|--.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 45788899999999998764321122345566666666554 34677888 8999999999999999999995444
Q ss_pred HHH--HHHhhcC------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 290 PVV--YSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 290 ~~l--~~~~~~G------~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
++- ..+...| .+.+.++++.+.++|.+.|..+|.++++.-++..+.
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 432 1111223 356789999999999999999999999888776553
No 295
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.90 E-value=0.17 Score=49.43 Aligned_cols=206 Identities=21% Similarity=0.207 Sum_probs=109.0
Q ss_pred CCCCcceeEcCeecC--cc-eeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecC
Q 018919 57 SKIDMNTTVLGFKIS--MP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133 (349)
Q Consensus 57 ~~~d~s~~l~g~~~~--~P-i~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~ 133 (349)
..-++.+.+.+..+. .| ++++|-.. -+.+.-...|+.+.+.|+.+...... . -+. .+..||=.
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~iaGpc~i---E~~~~~~~~A~~lk~~g~~~~r~~~~-k-----pRt--sp~~f~g~--- 166 (360)
T PRK12595 101 KPEDTIVDVKGEVIGDGNQSFIFGPCSV---ESYEQVEAVAKALKAKGLKLLRGGAF-K-----PRT--SPYDFQGL--- 166 (360)
T ss_pred CCCCCEEEECCEEecCCCeeeEEecccc---cCHHHHHHHHHHHHHcCCcEEEcccc-C-----CCC--CCccccCC---
Confidence 344555556555442 34 44555322 12334457888889999887653210 0 011 23334321
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v 212 (349)
..+....+.+.+++.|...+. ++-. .+.-++-..+ ++- ++... +-..++.++.+.+ ++.||++|.-
T Consensus 167 ~~e~l~~L~~~~~~~Gl~~~t-~v~d----~~~~~~l~~~-vd~lkI~s~------~~~n~~LL~~~a~-~gkPVilk~G 233 (360)
T PRK12595 167 GVEGLKILKQVADEYGLAVIS-EIVN----PADVEVALDY-VDVIQIGAR------NMQNFELLKAAGR-VNKPVLLKRG 233 (360)
T ss_pred CHHHHHHHHHHHHHcCCCEEE-eeCC----HHHHHHHHHh-CCeEEECcc------cccCHHHHHHHHc-cCCcEEEeCC
Confidence 234444455556677877653 1111 1111111111 110 01111 1111466777765 6999999986
Q ss_pred c--CHHHHH----HHHHcCCCEEEEecCCCCCCC---CchhhHHHHHHHHHHhcCCCcEEEecCCCCH----H--HHHHH
Q 018919 213 L--TAEDAR----IAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDGGVRRG----T--DVFKA 277 (349)
Q Consensus 213 ~--~~~~a~----~a~~~G~d~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~----~--dv~ka 277 (349)
+ ++++.. ...+.|.+-|++--+|-+... .....+..+..+++.. ++||+.|.+=..| . -...|
T Consensus 234 ~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~~d~~Hs~G~r~~~~~~a~aA 311 (360)
T PRK12595 234 LSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVMVDVTHSTGRRDLLLPTAKAA 311 (360)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEEEeCCCCCcchhhHHHHHHHH
Confidence 4 776644 445678876766533433211 1123677888887765 6999996542232 1 33457
Q ss_pred HHhCCCEEEEchHH
Q 018919 278 LALGASGIFIGRPV 291 (349)
Q Consensus 278 l~~GA~~V~ig~~~ 291 (349)
+++|||+++|-+-+
T Consensus 312 va~GAdg~~iE~H~ 325 (360)
T PRK12595 312 LAIGADGVMAEVHP 325 (360)
T ss_pred HHcCCCeEEEEecC
Confidence 88999999999876
No 296
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.89 E-value=0.0073 Score=54.82 Aligned_cols=80 Identities=18% Similarity=0.121 Sum_probs=56.9
Q ss_pred HHHHHHHHHhc-----CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC
Q 018919 193 DEDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267 (349)
Q Consensus 193 ~~~i~~i~~~~-----~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 267 (349)
.+.++.+++.+ ++-|.+..|.+.++++.+.++|+++++--+. +.+.+.... .. ++|++ -|
T Consensus 54 ~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~----------~~~v~~~~~-~~--~i~~i--PG 118 (222)
T PRK07114 54 HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLF----------NPDIAKVCN-RR--KVPYS--PG 118 (222)
T ss_pred HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHH-Hc--CCCEe--CC
Confidence 45566665433 3567788889999999999999999964211 122232222 22 56666 89
Q ss_pred CCCHHHHHHHHHhCCCEEEE
Q 018919 268 VRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~i 287 (349)
+.|+.++..|+.+||+.|=+
T Consensus 119 ~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 119 CGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999998854
No 297
>PRK08999 hypothetical protein; Provisional
Probab=96.88 E-value=0.0043 Score=59.12 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=58.6
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCCCCCC--CCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+-+.+++..|.+.|+|+|.++--..+.. +..+..++.+.++++.. ++||++-||| +.+++...+++||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 3578889999999999999875332211 11122367777777665 7999999999 88999999999999998876
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
.+
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 53
No 298
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.87 E-value=0.06 Score=47.57 Aligned_cols=148 Identities=26% Similarity=0.306 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc--ccCCCCC-Cc--h-HHHHHHHHHh-cCCc
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK--NFQGLDL-GK--M-DEDVKWLQTI-TKLP 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~--~~~~~~~-~~--~-~~~i~~i~~~-~~~p 206 (349)
|.+.+...++-+...|.+.|++.+....+ +.++.++. +-..+.+ -. . ++.+++.|.+ ..+|
T Consensus 30 ~v~~T~kilkglq~gG~dIIELGvPfSDp------------~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~P 97 (268)
T KOG4175|consen 30 DVSTTAKILKGLQSGGSDIIELGVPFSDP------------LADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCP 97 (268)
T ss_pred cHHHHHHHHHHHhcCCcCeEEecCccCcc------------ccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccc
Confidence 45567788888888999999976632110 00111110 0000111 11 1 5678888777 5789
Q ss_pred EEEEEecCH-------HHHHHHHHcCCCEEEEec---------------CCCC---------C----------CC-----
Q 018919 207 ILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR---------Q----------LD----- 240 (349)
Q Consensus 207 v~vK~v~~~-------~~a~~a~~~G~d~I~v~~---------------~gg~---------~----------~~----- 240 (349)
|++-+.-+| .....+.++|+.+.++-. ||-. . -|
T Consensus 98 IiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYv 177 (268)
T KOG4175|consen 98 IILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYV 177 (268)
T ss_pred eeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEE
Confidence 988776443 346778889998887641 1110 0 00
Q ss_pred ------Cc-hhh-----HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 241 ------YV-PAT-----IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 241 ------~~-~~~-----~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
.| ..+ -+.+.+++++. ++.|+...-||.+++++...=.- ||+|.+|+.++.-+
T Consensus 178 VSrmG~TG~~~svn~~l~~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~l~ 242 (268)
T KOG4175|consen 178 VSRMGVTGTRESVNEKLQSLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVKLL 242 (268)
T ss_pred EEeccccccHHHHHHHHHHHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHHHh
Confidence 11 111 13344444443 47999999999999998654444 99999999987643
No 299
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.036 Score=51.15 Aligned_cols=164 Identities=23% Similarity=0.206 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCeEEecCCCCCCHHHHHhh-C-CCceEEEEeec-----CC-hhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 92 ATARAASAAGTIMTLSSWSTSSVEEVAST-G-PGIRFFQLYVY-----KD-RNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~~~~~~e~i~~~-~-~~~~~~Ql~~~-----~~-~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
.+.+.+.+.|+..+..+.+. ..-+... . ..++++++-.. .+ .......++.+...|++++..|+..-..
T Consensus 47 ~~v~~v~~~g~dav~~~~G~--~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse- 123 (265)
T COG1830 47 NIVAKVAEAGADAVAMTPGI--ARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSE- 123 (265)
T ss_pred HHHHHHHhcCCCEEEecHhH--HhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCc-
Confidence 46667777787766544321 1111111 1 13455555321 11 1112234566778899999888853110
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHH---HHHHHHHhcCCcEEEEEe-----------cCH----HHHHHHHHcC
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDE---DVKWLQTITKLPILVKGV-----------LTA----EDARIAVQAG 225 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~---~i~~i~~~~~~pv~vK~v-----------~~~----~~a~~a~~~G 225 (349)
.+.+..+ .+..-...+++|+++-.. .++ .-++.+.+.|
T Consensus 124 ------------------------~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG 179 (265)
T COG1830 124 ------------------------TEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG 179 (265)
T ss_pred ------------------------chHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhc
Confidence 0111123 334444557999887321 112 2257899999
Q ss_pred CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC-HHH-H----HHHHHhCCCEEEEchHHHH
Q 018919 226 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTD-V----FKALALGASGIFIGRPVVY 293 (349)
Q Consensus 226 ~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~d-v----~kal~~GA~~V~ig~~~l~ 293 (349)
||.|.+.=.| ..+...++.+.+ .+||+..||=.. .++ + ..++..||.++.+||=++.
T Consensus 180 ADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 180 ADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred CCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 9999883211 125666777777 499999999988 322 2 2466789999999996653
No 300
>PLN02591 tryptophan synthase
Probab=96.85 E-value=0.0097 Score=55.04 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=75.6
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhh---C-C-CceEEEEeecCChhHHHHHHHHH
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST---G-P-GIRFFQLYVYKDRNVVAQLVRRA 145 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~---~-~-~~~~~Ql~~~~~~~~~~~~~~~~ 145 (349)
+.|++ =|++....-.-+...+.+.|+++|+.+++= --.++||..+. . . +.-.+++..+..++ +.++++
T Consensus 78 ~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~Gvii--pDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~---~ri~~i 150 (250)
T PLN02591 78 SCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVV--PDLPLEETEALRAEAAKNGIELVLLTTPTTPT---ERMKAI 150 (250)
T ss_pred CCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEe--CCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHH
Confidence 34654 355443222235668899999999887751 22355554322 1 1 44455555443332 233333
Q ss_pred HHcCCCEEE-EecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHH
Q 018919 146 ERAGFKAIA-LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG-VLTAEDARIAV 222 (349)
Q Consensus 146 ~~~G~~~i~-i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~ 222 (349)
.+..-..|. +.. ..+.|.|. ..+.. .+.++++|+.+++|+++.. +.++++++.+.
T Consensus 151 a~~~~gFIY~Vs~-~GvTG~~~---------------------~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~ 208 (250)
T PLN02591 151 AEASEGFVYLVSS-TGVTGARA---------------------SVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIA 208 (250)
T ss_pred HHhCCCcEEEeeC-CCCcCCCc---------------------CCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHH
Confidence 333222232 221 11111110 01222 4569999998999999865 57799999999
Q ss_pred HcCCCEEEEec
Q 018919 223 QAGAAGIIVSN 233 (349)
Q Consensus 223 ~~G~d~I~v~~ 233 (349)
+.|+|+++|..
T Consensus 209 ~~GADGvIVGS 219 (250)
T PLN02591 209 GWGADGVIVGS 219 (250)
T ss_pred hcCCCEEEECH
Confidence 99999999954
No 301
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.83 E-value=0.011 Score=55.61 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=66.4
Q ss_pred HHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 194 EDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 194 ~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
+.++++|+... .+|.| .+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||. .+
T Consensus 194 ~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGIt-~~ 261 (294)
T PRK06978 194 AALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGVN-FD 261 (294)
T ss_pred HHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 34667766432 44544 467999999999999999999764 3455666666666678999999986 58
Q ss_pred HHHHHHHhCCCEEEEchHHH
Q 018919 273 DVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 273 dv~kal~~GA~~V~ig~~~l 292 (349)
.+.++...|+|.+.+|....
T Consensus 262 ni~~yA~tGVD~IS~galth 281 (294)
T PRK06978 262 TVRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 88888889999999998654
No 302
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.09 Score=46.19 Aligned_cols=155 Identities=23% Similarity=0.184 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCc--EEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLP--ILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~p--v~v 209 (349)
.|..-..+..+++.++|++++-+++=-. .| +| +-.+ --.++.+|+.++.| +=+
T Consensus 14 ~dfanL~~e~~~~l~~GadwlHlDVMDg-----------~F-Vp------------NiT~G~pvV~slR~~~~~~~ffD~ 69 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLHLDVMDG-----------HF-VP------------NITFGPPVVESLRKHTGADPFFDV 69 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEEEeeecc-----------cc-cC------------CcccchHHHHHHHhccCCCcceeE
Confidence 4555667788899999999986654110 11 11 1122 34677788776655 212
Q ss_pred E-EecCHHH-HHHHHHcCCCEEEEecC------------------------CCCC----------CC-----------Cc
Q 018919 210 K-GVLTAED-ARIAVQAGAAGIIVSNH------------------------GARQ----------LD-----------YV 242 (349)
Q Consensus 210 K-~v~~~~~-a~~a~~~G~d~I~v~~~------------------------gg~~----------~~-----------~~ 242 (349)
- .+.+|++ +....++||+.+++.-. .|++ +| +|
T Consensus 70 HmMV~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGG 149 (224)
T KOG3111|consen 70 HMMVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGG 149 (224)
T ss_pred EEeecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCch
Confidence 2 2456654 56677788887777410 1221 01 23
Q ss_pred hhhH-HHHHHHHHHh--cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 018919 243 PATI-MALEEVVKAT--QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 318 (349)
Q Consensus 243 ~~~~-~~l~~i~~~~--~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m 318 (349)
..-. +.++++.... ..+..|=.|||+.. +.+-++.++||+++..|++.+.+ ..-.+++..++++.....
T Consensus 150 QkFme~mm~KV~~lR~kyp~l~ievDGGv~~-~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 150 QKFMEDMMPKVEWLREKYPNLDIEVDGGVGP-STIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKAA 221 (224)
T ss_pred hhhHHHHHHHHHHHHHhCCCceEEecCCcCc-chHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhhh
Confidence 3222 3344432211 12566669999865 88889999999999999998742 233467788887766543
No 303
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=96.78 E-value=0.5 Score=44.73 Aligned_cols=184 Identities=13% Similarity=0.065 Sum_probs=109.0
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+++-..+.|+.+++ + ++...+.+|..+ ... .+.++++- .+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 46777787544434555666888888889977654 3 234456665322 222 35667763 24666
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe----c
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV----L 213 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v----~ 213 (349)
..++++.+++.|++++.+.- |.. . +. .+....+..+.+.+.+++||++=.. .
T Consensus 88 ai~~a~~a~~~Gadav~~~p--P~y-----------~-~~----------s~~~i~~~f~~v~~a~~~pvilYn~~g~~l 143 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP--PYL-----------I-NG----------EQEGLYAHVEAVCESTDLGVIVYQRDNAVL 143 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCC-----------C-CC----------CHHHHHHHHHHHHhccCCCEEEEeCCCCCC
Confidence 77888899999999987622 210 0 10 0111255677777778999887542 4
Q ss_pred CHHHHHHHHH-c-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 214 TAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 214 ~~~~a~~a~~-~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
+++...++.+ . .+-+|.-+ ..++..+.++.+..++++.|+...+. ....+..++.+||++++.|..-
T Consensus 144 ~~~~~~~La~~~~nvvgiKds----------~~d~~~~~~~~~~~~~~~~v~~G~~~-~d~~~~~~~~~Ga~G~is~~~n 212 (296)
T TIGR03249 144 NADTLERLADRCPNLVGFKDG----------IGDMEQMIEITQRLGDRLGYLGGMPT-AEVTAPAYLPLGVTSYSSAIFN 212 (296)
T ss_pred CHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEEeCCCc-chhhHHHHHhCCCCEEEecHHH
Confidence 6787777765 2 34444432 11344555555555445544432211 1234567788999999988754
Q ss_pred H
Q 018919 292 V 292 (349)
Q Consensus 292 l 292 (349)
+
T Consensus 213 ~ 213 (296)
T TIGR03249 213 F 213 (296)
T ss_pred h
Confidence 3
No 304
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.77 E-value=0.3 Score=45.81 Aligned_cols=181 Identities=18% Similarity=0.172 Sum_probs=106.6
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|..+.|+.-..-.+.++-..+.+-+.+.|+.+++ + ++...+.+|..+ ... .+.++++.. .+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHH
Confidence 36677777544444555666788888888976554 2 223456665322 222 245556543 35667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+.- |.. . + .+.+ ..+..+.+.+.+++||++=..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~--P~~-----------~-~-----------~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~ 138 (284)
T cd00950 84 AIELTKRAEKAGADAALVVT--PYY-----------N-K-----------PSQEGLYAHFKAIAEATDLPVILYNVPGRT 138 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcc--ccc-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEEChhHh
Confidence 78899999999999987632 210 0 1 0111 256677777778999987553
Q ss_pred ---cCHHHHHHHHHc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 213 ---LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 213 ---~~~~~a~~a~~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+++..+++.+. .+-+|.-+. .+...+.++.+..++++.|+ +|. ...+..++.+|+++.+.|
T Consensus 139 g~~ls~~~~~~L~~~p~v~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G~---d~~~~~~~~~G~~G~~s~ 204 (284)
T cd00950 139 GVNIEPETVLRLAEHPNIVGIKEAT----------GDLDRVSELIALCPDDFAVL-SGD---DALTLPFLALGGVGVISV 204 (284)
T ss_pred CCCCCHHHHHHHhcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEE-eCC---hHhHHHHHHCCCCEEEeh
Confidence 456777777654 122333211 12334445555554456554 331 245667888999999988
Q ss_pred hHHH
Q 018919 289 RPVV 292 (349)
Q Consensus 289 ~~~l 292 (349)
...+
T Consensus 205 ~~n~ 208 (284)
T cd00950 205 AANV 208 (284)
T ss_pred HHHh
Confidence 8643
No 305
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.77 E-value=0.014 Score=53.26 Aligned_cols=83 Identities=17% Similarity=0.001 Sum_probs=61.2
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQT 201 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~ 201 (349)
.|.++.+-...+...+.+.++.++++|+++|.|+...+ + .+.. |+.|+++++
T Consensus 135 ~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~-----------------g----------~~~a~~~~I~~i~~ 187 (231)
T TIGR00736 135 KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYP-----------------G----------KPYADMDLLKILSE 187 (231)
T ss_pred CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCC-----------------C----------CchhhHHHHHHHHH
Confidence 46677765543444567889999999999987642111 0 1113 899999999
Q ss_pred hcC-CcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 202 ITK-LPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 202 ~~~-~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
..+ +||+.-+ +.+.++|++.+++|||+|.+.
T Consensus 188 ~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 188 EFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 884 9987544 689999999999999999884
No 306
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.75 E-value=0.029 Score=52.31 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.++.|+.+.. +.++|+++.+.++|||++++..
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 5669999998999999875 5779999999999999999953
No 307
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=96.74 E-value=0.41 Score=45.06 Aligned_cols=180 Identities=21% Similarity=0.214 Sum_probs=104.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CCCCCHHHHH-------hh-CC-CceEEEEeecCChhHH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~~---~~~~~~e~i~-------~~-~~-~~~~~Ql~~~~~~~~~ 138 (349)
|.++.|+.-..-.+.+.-..+++-..+.|+.+++ ++ +.+.+.+|.. +. .+ .+.++++-. .+.+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA-NSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES-SSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc-hhHHHH
Confidence 5566676443333444445777778888887654 22 2345665532 22 22 346667543 466778
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe-----
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV----- 212 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v----- 212 (349)
.++++.+++.|++++.+.- |.. . + .+.+ ..+..+.+.+.+++||++=..
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~-----------~-~-----------~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg 140 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYY-----------F-K-----------PSQEELIDYFRAIADATDLPIIIYNNPARTG 140 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STS-----------S-S-----------CCHHHHHHHHHHHHHHSSSEEEEEEBHHHHS
T ss_pred HHHHHHHhhcCceEEEEec--ccc-----------c-c-----------chhhHHHHHHHHHHhhcCCCEEEEECCCccc
Confidence 8899999999999998744 211 0 0 0111 256678888888999998664
Q ss_pred --cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 --LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 --~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++.+.. +-++..++ .++..+.++.+...+++.|+ .| ....+..++.+|+++++.+.
T Consensus 141 ~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G---~d~~~~~~l~~G~~G~is~~ 206 (289)
T PF00701_consen 141 NDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVF-CG---DDELLLPALAAGADGFISGL 206 (289)
T ss_dssp STSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEE-ES---SGGGHHHHHHTTSSEEEESG
T ss_pred cCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeee-cc---ccccccccccccCCEEEEcc
Confidence 2456677776622 22222211 12344555555555566555 44 44557889999999999998
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
+.+
T Consensus 207 ~n~ 209 (289)
T PF00701_consen 207 ANV 209 (289)
T ss_dssp GGT
T ss_pred ccc
Confidence 643
No 308
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.73 E-value=0.016 Score=52.14 Aligned_cols=80 Identities=24% Similarity=0.220 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCC
Q 018919 193 DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 270 (349)
Q Consensus 193 ~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 270 (349)
.+.|+.++++++ +.|.+..+.+.++++.+.++|+|+++..+. ..+.+ +.+... +++++. |+.|
T Consensus 49 ~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~----------~~~v~-~~~~~~--~~~~~~--G~~t 113 (206)
T PRK09140 49 FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT----------DPEVI-RRAVAL--GMVVMP--GVAT 113 (206)
T ss_pred HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC----------CHHHH-HHHHHC--CCcEEc--ccCC
Confidence 567999998885 456777789999999999999999966211 11222 222222 455553 3999
Q ss_pred HHHHHHHHHhCCCEEEE
Q 018919 271 GTDVFKALALGASGIFI 287 (349)
Q Consensus 271 ~~dv~kal~~GA~~V~i 287 (349)
++++.++..+|||.|.+
T Consensus 114 ~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 114 PTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999987
No 309
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.72 E-value=0.02 Score=55.15 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+.++.++++|+|.|.++.+.|.. ....+.+.++++..+ ++||++ |.+.+.+++.+++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 366888999999999987543311 234567777777653 588887 99999999999999999999984
No 310
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=96.71 E-value=0.17 Score=46.89 Aligned_cols=141 Identities=11% Similarity=0.005 Sum_probs=89.4
Q ss_pred CCceEEEEee--cCChhHHHHHHHHHHHcCC-CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHH
Q 018919 122 PGIRFFQLYV--YKDRNVVAQLVRRAERAGF-KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKW 198 (349)
Q Consensus 122 ~~~~~~Ql~~--~~~~~~~~~~~~~~~~~G~-~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~ 198 (349)
++...+|+.+ ..|.+.+.+.++++.+..- +-+.|.+..... | .+.++.
T Consensus 84 ~G~Vs~ev~~~~~~d~~~mi~~A~~l~~~~~~~nv~IKIPaT~~---------------G--------------l~A~~~ 134 (252)
T cd00439 84 DGRVSVEVSARLADDTQGMVEAAKYLSKVVNRRNIYIKIPATAE---------------G--------------IPAIKD 134 (252)
T ss_pred CCeEEEEEeccccCCHHHHHHHHHHHHHhcCcccEEEEeCCCHH---------------H--------------HHHHHH
Confidence 3566778754 1455666666666665532 345555533210 0 356677
Q ss_pred HHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEec-----CCCCCC-----C-CchhhHHHHHHHHHHh---cCCCcEEE
Q 018919 199 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQL-----D-YVPATIMALEEVVKAT---QGRIPVFL 264 (349)
Q Consensus 199 i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~-----~gg~~~-----~-~~~~~~~~l~~i~~~~---~~~ipvia 264 (349)
+.+. ++++-+-.+.+.+.+..|.++|++.|...- +|..++ + .+.+.+..+.++.+.. +.+..|++
T Consensus 135 L~~~-GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~ 213 (252)
T cd00439 135 LIAA-GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLW 213 (252)
T ss_pred HHHC-CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 7654 899999899999999999999999987641 122110 0 0113445555555443 23556655
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 265 DGGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 265 ~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
.+ +++..++.+++ |++.|-+....+..+
T Consensus 214 AS-~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 214 AS-FSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred Ee-eCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 55 89999997765 999999998887654
No 311
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.70 E-value=0.023 Score=50.73 Aligned_cols=124 Identities=20% Similarity=0.325 Sum_probs=74.4
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcE
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPI 207 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv 207 (349)
|...+.+.+.+.++.+.+.|++++++..=.+ |... .+.++++.+.. +.|+
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~----------------------------dg~iD~~~~~~Li~~a~~~~~ 117 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE----------------------------DGEIDEEALEELIEAAGGMPV 117 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET----------------------------TSSB-HHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC----------------------------CCCcCHHHHHHHHHhcCCCeE
Confidence 4434445677888889999999998654211 1112 45566665554 6777
Q ss_pred EEEEe----cCHHH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-hC
Q 018919 208 LVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LG 281 (349)
Q Consensus 208 ~vK~v----~~~~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~-~G 281 (349)
..--. .+++. .+.+.+.|++.|-.|+... .....++.|.++.+..++++.|++.|||+. +.+.+.++ .|
T Consensus 118 tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~~~tg 192 (201)
T PF03932_consen 118 TFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEIMPGGGVRA-ENVPELVEETG 192 (201)
T ss_dssp EE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHHHHHT
T ss_pred EEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHHHhhC
Confidence 76542 34444 4667899999997754321 122235667777666667899999999987 67777777 88
Q ss_pred CCEEE
Q 018919 282 ASGIF 286 (349)
Q Consensus 282 A~~V~ 286 (349)
+..+=
T Consensus 193 ~~~~H 197 (201)
T PF03932_consen 193 VREIH 197 (201)
T ss_dssp -SEEE
T ss_pred CeEEe
Confidence 87663
No 312
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.69 E-value=0.01 Score=60.80 Aligned_cols=76 Identities=24% Similarity=0.218 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CC-CCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-----------HHHHHHHHhCC
Q 018919 216 EDARIAVQAGAAGIIVSNHGA-RQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 282 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg-~~-~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-----------~dv~kal~~GA 282 (349)
+.|+.-.+.|||-|.+-.--+ +. .....+.++.+.++++.+ .+|+.+.||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 678999999999998765322 11 112234578888888877 7999999999998 55889999999
Q ss_pred CEEEEchHHHH
Q 018919 283 SGIFIGRPVVY 293 (349)
Q Consensus 283 ~~V~ig~~~l~ 293 (349)
|-|.||+..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997765
No 313
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.34 Score=44.31 Aligned_cols=150 Identities=18% Similarity=0.168 Sum_probs=99.1
Q ss_pred HHHHhhCCC--ceEEEEeecCChhHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc
Q 018919 115 EEVASTGPG--IRFFQLYVYKDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (349)
Q Consensus 115 e~i~~~~~~--~~~~Ql~~~~~~~~~~~~~~~~~~~-G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (349)
.|+.+..|+ +.+.|... .|.+.+.+.++++.+. +-..+.|-+..... |
T Consensus 54 ~ei~~~v~G~v~e~~~~ls-~d~e~mi~eA~~L~~~~~~~~i~IKIP~T~e---------------G------------- 104 (239)
T COG0176 54 KEILKIVPGRVTEVDEVLS-FDAEAMIEEARRLAKLIDNVGIVIKIPATWE---------------G------------- 104 (239)
T ss_pred HHHHhcCCCCCeEeeeeec-ccHHHHHHHHHHHHHhcCcCCeEEEeCCCHH---------------H-------------
Confidence 456655564 45566543 5777777777777765 33335665532210 0
Q ss_pred hHHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHH---HHHhcCC-CcEEEecC
Q 018919 192 MDEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV---VKATQGR-IPVFLDGG 267 (349)
Q Consensus 192 ~~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i---~~~~~~~-ipvia~GG 267 (349)
.+.++.+++. ++++-+-.+.+...|..|.++|++.|.. .=||-.|++......+.++ .+..+.. ..+++.|
T Consensus 105 -l~Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas- 179 (239)
T COG0176 105 -LKAIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVAS- 179 (239)
T ss_pred -HHHHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEEec-
Confidence 3556677665 7888888889999999999999988865 3345444444333344444 4433223 4566555
Q ss_pred CCCHHHHHHHHHhCCCEEEEchHHHHHHhhc
Q 018919 268 VRRGTDVFKALALGASGIFIGRPVVYSLAAE 298 (349)
Q Consensus 268 I~~~~dv~kal~~GA~~V~ig~~~l~~~~~~ 298 (349)
++.+.++..+..+|||.+-+.-..+..+...
T Consensus 180 ~~~~~~~~~~~l~G~d~~Tip~~~l~~l~~~ 210 (239)
T COG0176 180 ARFPNHVYIAALAGADVLTIPPDLLKQLLKH 210 (239)
T ss_pred CccHHHHHHHHHhCCCcccCCHHHHHHHHhc
Confidence 9999999999999999999999888776554
No 314
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.66 E-value=0.6 Score=44.04 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=71.7
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V 285 (349)
.+|++|+... +.|+|.+-++. ||-. .+.| .++.|.+|.+.+ ++|++.=||=..++ ++.|++.+|..-|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 3678887755 59999999874 5543 3333 578899999887 78888877665554 5667899999999
Q ss_pred EEchHHHHHHhh--------c-C----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA--------E-G----EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~--------~-G----~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... . + ..-.....+.+++..+..|..+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 0 0 1112334455666667777777653
No 315
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.65 E-value=0.068 Score=47.34 Aligned_cols=125 Identities=22% Similarity=0.183 Sum_probs=81.7
Q ss_pred EEEEee-cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-
Q 018919 126 FFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI- 202 (349)
Q Consensus 126 ~~Ql~~-~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~- 202 (349)
|+|+-. ..+.+...+.++.+.+. +++++++... . ..+ .+.++++++.
T Consensus 2 ~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~----------~-------------------~~~g~~~i~~i~~~~ 51 (202)
T cd04726 2 LLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPL----------I-------------------KSEGMEAVRALREAF 51 (202)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHH----------H-------------------HHhCHHHHHHHHHHC
Confidence 455533 13567777888888888 9998874321 0 011 4678888886
Q ss_pred cCCcEEEEE-ecCH--HHHHHHHHcCCCEEEEecCCCCCCCCchhhHH-HHHHHHHHhcCCCcEEEe-cCCCCHHHHHHH
Q 018919 203 TKLPILVKG-VLTA--EDARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFLD-GGVRRGTDVFKA 277 (349)
Q Consensus 203 ~~~pv~vK~-v~~~--~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipvia~-GGI~~~~dv~ka 277 (349)
.++|+++-. +.++ ..++.+.++|+|+|++.... .+...+ .+..++ .. +++++++ =+..|+.++.++
T Consensus 52 ~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~------~~~~~~~~i~~~~-~~--g~~~~v~~~~~~t~~e~~~~ 122 (202)
T cd04726 52 PDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA------PLSTIKKAVKAAK-KY--GKEVQVDLIGVEDPEKRAKL 122 (202)
T ss_pred CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC------CHHHHHHHHHHHH-Hc--CCeEEEEEeCCCCHHHHHHH
Confidence 478887732 2233 45789999999999994321 111122 222222 22 5777775 789999999998
Q ss_pred HHhCCCEEEEch
Q 018919 278 LALGASGIFIGR 289 (349)
Q Consensus 278 l~~GA~~V~ig~ 289 (349)
+..|+|.|.++.
T Consensus 123 ~~~~~d~v~~~~ 134 (202)
T cd04726 123 LKLGVDIVILHR 134 (202)
T ss_pred HHCCCCEEEEcC
Confidence 889999999853
No 316
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.65 E-value=0.019 Score=54.38 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC-----CcEEEEEecCHHHHHHHHH------cCCCEEEEecC--CCCCCCCchhhHHHHHHHHHHhcCCC
Q 018919 194 EDVKWLQTITK-----LPILVKGVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRI 260 (349)
Q Consensus 194 ~~i~~i~~~~~-----~pv~vK~v~~~~~a~~a~~------~G~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~i 260 (349)
+.++.+|+..+ .+|.| .+.+.++++.+++ +|+|.|.+.|- ..... ..+.+.+.+..+.++++.
T Consensus 188 ~av~~~r~~~~~~~~~~kIeV-Ev~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~---~~~~e~l~~av~~~~~~~ 263 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEV-ETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENG---DVDVSMLKEAVELINGRF 263 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEE-EECCHHHHHHHHHhcccccCCCCEEEeCCCccccccc---CCCHHHHHHHHHhhCCCc
Confidence 34677766221 34443 4679999999999 99999999874 11111 124566667766666678
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 261 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 261 pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++-++|||. .+.+.++...|+|.+.+|....
T Consensus 264 ~lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 264 ETEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred eEEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 999999986 4888888889999999998654
No 317
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.64 E-value=0.36 Score=45.74 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=96.8
Q ss_pred hHHHHHHHHHcCCeEEecCCC-------------CCCHHHHHh-------hCCCceEEEEe-ecCChhHHHHHHHHHHHc
Q 018919 90 EYATARAASAAGTIMTLSSWS-------------TSSVEEVAS-------TGPGIRFFQLY-VYKDRNVVAQLVRRAERA 148 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~-------------~~~~e~i~~-------~~~~~~~~Ql~-~~~~~~~~~~~~~~~~~~ 148 (349)
|..-|+.+.++|...+..+.+ ..+++|+.. ...-|..+-+- +..+...+.+.+++++++
T Consensus 25 Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~a 104 (294)
T TIGR02319 25 DALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERV 104 (294)
T ss_pred CHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHc
Confidence 346889999999887653221 124444332 22223333220 012333357789999999
Q ss_pred CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEe------cCHH----
Q 018919 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGV------LTAE---- 216 (349)
Q Consensus 149 G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v------~~~~---- 216 (349)
|+.+|.|. |...+ +| .++.-. ..+.+.+. .+.|+..++.. +.++++--. ...+
T Consensus 105 Gaagi~IE-Dq~~p-K~-----cg~~~~--------k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~ 169 (294)
T TIGR02319 105 GIVGYHLE-DQVNP-KR-----CGHLEG--------KRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIR 169 (294)
T ss_pred CCeEEEEE-CCCCc-cc-----cCCCCC--------ccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHH
Confidence 99887652 32110 00 111000 00122322 45566666543 334443222 1123
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcE---EEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV---FLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv---ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
-++...++|||.|.+. ++.+.+.+.++.+.++ .|+ +..||-.-...+.+.-++|.+.|..+...++
T Consensus 170 Ra~aY~eAGAD~ifi~---------~~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 170 RSREYVAAGADCIFLE---------AMLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred HHHHHHHhCCCEEEec---------CCCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence 3566789999999882 2345677888888773 444 4444432223455566799999999988776
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 239 a 239 (294)
T TIGR02319 239 A 239 (294)
T ss_pred H
Confidence 5
No 318
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.63 E-value=0.67 Score=44.14 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=75.3
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH--------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-------------- 272 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-------------- 272 (349)
.+|++|+.-. +.|+|.+-++. ||-.... +.| .++.|.+|++.+ ++|++.=||=..++
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~ 231 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLK 231 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccc
Confidence 4578887765 58999998874 4443211 333 578999998887 79999998877776
Q ss_pred --------HHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 273 --------DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 273 --------dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++.|++.+|..-|=++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 232 ~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 232 GSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred cccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999977544321 00 1123334455666667777777753
No 319
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.62 E-value=0.46 Score=44.87 Aligned_cols=193 Identities=17% Similarity=0.076 Sum_probs=105.0
Q ss_pred eeecccccccccCChhhHHHHHHHHHc---------CCeEEecCCC------------CCCHHHHHhh-------CCCce
Q 018919 74 IMIAPTAMQKMAHPEGEYATARAASAA---------GTIMTLSSWS------------TSSVEEVAST-------GPGIR 125 (349)
Q Consensus 74 i~iApm~~~~l~~~~~~~~la~aa~~~---------G~~~~~~~~~------------~~~~e~i~~~-------~~~~~ 125 (349)
.++.|=.+ |..-|+.+.+. |...+..+.. ..+++|+... ..-|.
T Consensus 10 ~l~~p~~~--------D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv 81 (285)
T TIGR02320 10 LERLMEAH--------NGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPI 81 (285)
T ss_pred CEEEecCc--------CHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCE
Confidence 55666433 33677888888 8776543221 1244444322 12344
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHh-c
Q 018919 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTI-T 203 (349)
Q Consensus 126 ~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~-~ 203 (349)
.+-.-...++..+.+.+++++++|+.+|.|. |...+ +| .++. . ......+.+.+. .+.|+..++. .
T Consensus 82 ~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq~~p-k~-----cg~~-~----~~~~~~l~s~ee~~~kI~Aa~~a~~ 149 (285)
T TIGR02320 82 ILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DKLGL-KK-----NSLF-G----NDVAQPQASVEEFCGKIRAGKDAQT 149 (285)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-ccCCC-cc-----cccc-C----CCCcccccCHHHHHHHHHHHHHhcc
Confidence 4433223566777888999999999987651 32110 00 0000 0 000000122222 4556666554 2
Q ss_pred --CCcEEEEE-----ecCH----HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC---CCcEEEecCCC
Q 018919 204 --KLPILVKG-----VLTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVR 269 (349)
Q Consensus 204 --~~pv~vK~-----v~~~----~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~---~ipvia~GGI~ 269 (349)
+++|++.. .... +-++...++|||+|.+. + ++.+.+.+.++.+.++. ++|+++..+-.
T Consensus 150 ~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~--~------~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~ 221 (285)
T TIGR02320 150 TEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH--S------RKKDPDEILEFARRFRNHYPRTPLVIVPTSY 221 (285)
T ss_pred CCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec--C------CCCCHHHHHHHHHHhhhhCCCCCEEEecCCC
Confidence 45666652 1123 34677899999999983 1 12345666666666643 56887755311
Q ss_pred CHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 270 RGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 270 ~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
-...+.+.-++|.+.|..|...+++
T Consensus 222 ~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 222 YTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 1123545567999999999877764
No 320
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.60 E-value=0.06 Score=51.78 Aligned_cols=186 Identities=18% Similarity=0.131 Sum_probs=102.2
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEE---ecCCCC------CCH----HH----HHhhCCCceEEEEeecC
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWST------SSV----EE----VASTGPGIRFFQLYVYK 133 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~---~~~~~~------~~~----e~----i~~~~~~~~~~Ql~~~~ 133 (349)
..|++++=++ . +++.-..+++.+.++|+.++ ++.... ..+ .+ +++....|.++.+-+
T Consensus 99 ~~pvi~si~g-~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASLNG-V---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEeCC-C---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 4687776432 2 34444678888888886654 222100 011 12 222223567777643
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEE-EEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPIL-VKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~-vK~ 211 (349)
+.+...+.++.++++|+++|.++-..+.... |....-..+ +. ..++...... ++.++++++..++||+ +.+
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~i---d~~~~~~~~-~~---glSG~~~~~~al~~v~~v~~~~~ipIig~GG 245 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQPDI---DLETLEVVP-NL---LLSSPAEIRLPLRWIAILSGRVKASLAASGG 245 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCCCc---cccccceec-CC---CcCCccchhHHHHHHHHHHcccCCCEEEECC
Confidence 3335677888899999999987543321111 000000000 00 0111001112 6778888888899986 666
Q ss_pred ecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 018919 212 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 279 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~ 279 (349)
+.+.+||.+.+.+|||+|.+... -+..|+... +.+.++.+++ -.-|+.+-+|+.-.++
T Consensus 246 I~s~~Da~e~l~aGA~~Vqv~ta---~~~~gp~~~~~i~~~L~~~l-------~~~g~~~i~e~~G~~~ 304 (325)
T cd04739 246 VHDAEDVVKYLLAGADVVMTTSA---LLRHGPDYIGTLLAGLEAWM-------EEHGYESVQQLRGSMS 304 (325)
T ss_pred CCCHHHHHHHHHcCCCeeEEehh---hhhcCchHHHHHHHHHHHHH-------HHcCCCCHHHHhcccc
Confidence 89999999999999999998521 012233222 2333343333 2356778888765434
No 321
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=96.58 E-value=0.69 Score=43.67 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=107.3
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hC-C-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TG-P-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~-~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-..-.+.++-..+.+...+.|+.+++ + ++...+.||..+ .. . -+.+.++. . +...
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 35667777544334555556788888889976653 2 334456665322 22 2 34566663 3 5667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.++++.+++.|++++.+.- |.. . + .+.+ ..+..+.+.+.+++||++=..
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p--P~y-----------~-~-----------~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~ 137 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP--PYL-----------T-E-----------APQEGLYAHVEAVCKSTDLGVIVYNRANAV 137 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCC-----------C-C-----------CCHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 78899999999999997622 210 0 0 0112 156677888888999987643
Q ss_pred cCHHHHHHHHH-cC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH-HHHHHHhCCCEEEEch
Q 018919 213 LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-VFKALALGASGIFIGR 289 (349)
Q Consensus 213 ~~~~~a~~a~~-~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d-v~kal~~GA~~V~ig~ 289 (349)
.+++...++.+ .. +-+|.-+ ...+..+.++.+..++++.|+ .|-.+.++ +..++.+||++.+.|.
T Consensus 138 l~~~~l~~L~~~~pnivgiKds----------~~d~~~~~~~~~~~~~~~~v~--~G~~~~d~~~~~~l~~Ga~G~is~~ 205 (289)
T cd00951 138 LTADSLARLAERCPNLVGFKDG----------VGDIELMRRIVAKLGDRLLYL--GGLPTAEVFALAYLAMGVPTYSSAV 205 (289)
T ss_pred CCHHHHHHHHhcCCCEEEEEeC----------CCCHHHHHHHHHhcCCCeEEE--eCCCcchHhHHHHHHCCCCEEEech
Confidence 46777777765 32 2333221 113444555555554444433 33332233 5678899999998887
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
+-+
T Consensus 206 ~n~ 208 (289)
T cd00951 206 FNF 208 (289)
T ss_pred hhh
Confidence 554
No 322
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.58 E-value=0.047 Score=51.37 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=85.9
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCC---------CC---HHH----HHhhCCCceEEEEeecC
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWST---------SS---VEE----VASTGPGIRFFQLYVYK 133 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~---------~~---~e~----i~~~~~~~~~~Ql~~~~ 133 (349)
..|++++=+ +. +++.-...++.+.+.|+.++ +....+ .. +.+ +++....+.++.+-...
T Consensus 98 ~~pvi~si~-g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIASVG-GS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEEec-cC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 457666533 22 33334577888888887655 221111 01 122 22222345667765545
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc-ccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK-NFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~-~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
+.+.+.+.++.++++|++++.++-.... +..+... ..|...... ...+...... ++.++++++.. ++||+.
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~---~~~~~~~--~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia 248 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISG---RVVDLKT--VGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIG 248 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCc---cceeccc--CccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 5667888999999999999987532211 0000000 000000000 0000000112 67799999988 899865
Q ss_pred E-EecCHHHHHHHHHcCCCEEEEe
Q 018919 210 K-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 210 K-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
- ++.+++++.+++++|||+|.+.
T Consensus 249 ~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 249 VGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred ECCCCCHHHHHHHHHcCccHheEc
Confidence 4 4688999999999999999884
No 323
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.54 E-value=0.19 Score=47.97 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=88.0
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc
Q 018919 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT 203 (349)
Q Consensus 125 ~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~ 203 (349)
..+++.. .+++...+.++++.+.|++++-++++.. ++. .+.++.+|+.+
T Consensus 126 ~~~~~~~-~~~~~~~~~~~~~~~~Gf~~iKik~g~~-----------------------------~~~d~~~v~~lr~~~ 175 (316)
T cd03319 126 TDYTISI-DTPEAMAAAAKKAAKRGFPLLKIKLGGD-----------------------------LEDDIERIRAIREAA 175 (316)
T ss_pred eEEEEeC-CCHHHHHHHHHHHHHcCCCEEEEEeCCC-----------------------------hhhHHHHHHHHHHhC
Confidence 3345543 5677777788888889999999887431 112 56788888877
Q ss_pred C-CcEEEEEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 018919 204 K-LPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 276 (349)
Q Consensus 204 ~-~pv~vK~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k 276 (349)
+ .++.++.- -+.++| +.+.+.|++.|-= ...+..++.+.++++.. ++||++++.+.+..|+.+
T Consensus 176 g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~--~ipIa~~E~~~~~~~~~~ 245 (316)
T cd03319 176 PDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS--PLPIMADESCFSAADAAR 245 (316)
T ss_pred CCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC--CCCEEEeCCCCCHHHHHH
Confidence 4 67777654 234443 4556677766621 01133567788887766 799999999999999999
Q ss_pred HHHh-CCCEEEEchHH
Q 018919 277 ALAL-GASGIFIGRPV 291 (349)
Q Consensus 277 al~~-GA~~V~ig~~~ 291 (349)
+++. ++|.|++-...
T Consensus 246 ~~~~~~~d~v~~~~~~ 261 (316)
T cd03319 246 LAGGGAYDGINIKLMK 261 (316)
T ss_pred HHhcCCCCEEEEeccc
Confidence 9995 68888886543
No 324
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.51 E-value=0.05 Score=49.72 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH-----------HHHHHHHhCCCE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 284 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-----------dv~kal~~GA~~ 284 (349)
+.++.+.+.|+|+++.+.+ .+..+++..+ .-.+...+||+ +. ....++..|||.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCE
Confidence 3456778899999988521 1344444443 33457789998 33 467788899999
Q ss_pred EEEchHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018919 285 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 315 (349)
Q Consensus 285 V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~ 315 (349)
+.+||+++.+ +......+.+.+++.
T Consensus 204 iVvGR~I~~a------~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 204 IVVGRPITQA------ADPAAAYEAILAEIA 228 (230)
T ss_pred EEECCcccCC------CCHHHHHHHHHHHhh
Confidence 9999998742 222345566666553
No 325
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.50 E-value=0.018 Score=54.96 Aligned_cols=88 Identities=20% Similarity=0.307 Sum_probs=58.6
Q ss_pred CCceEEEEeecC--ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH
Q 018919 122 PGIRFFQLYVYK--DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL 199 (349)
Q Consensus 122 ~~~~~~Ql~~~~--~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i 199 (349)
+.+..+.+-... +.+.+.+.++.++++|+++|.||--++.. .+ ..+..|+.++++
T Consensus 122 ~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q---------~~--------------~~~a~w~~i~~i 178 (309)
T PF01207_consen 122 PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ---------RY--------------KGPADWEAIAEI 178 (309)
T ss_dssp SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------CC--------------TS---HHHHHHC
T ss_pred ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------cC--------------CcccchHHHHHH
Confidence 334455443322 36778999999999999999998765421 11 012239999999
Q ss_pred HHhcCCcEEEEE-ecCHHHHHHHHHc-CCCEEEEe
Q 018919 200 QTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 232 (349)
Q Consensus 200 ~~~~~~pv~vK~-v~~~~~a~~a~~~-G~d~I~v~ 232 (349)
++..++||+.-| +.+.++++.+.+. |+|+|.+.
T Consensus 179 ~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 179 KEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred hhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 999999998876 6899999998876 99999884
No 326
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.46 E-value=0.031 Score=52.51 Aligned_cols=120 Identities=22% Similarity=0.259 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHh-----cCCCc-EEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIP-VFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ip-via~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
++|..|++.|+..|++|-.+...-....|.+-++..+..++ +.++- |+=+|-+|+.-|++..+..|||+|.=.-
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 45788999999999998654321112234555666666654 23454 4557889999999999999999985332
Q ss_pred HHH--HHHhhcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 018919 290 PVV--YSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 335 (349)
Q Consensus 290 ~~l--~~~~~~G-------~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 335 (349)
+|- ..+...| ++.+.++.+.+.++|.+.|..+|.+.++.-++..+.
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 221 1122223 357889999999999999999999999887766543
No 327
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.013 Score=52.38 Aligned_cols=79 Identities=30% Similarity=0.297 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+.|+.+++..+ .-|....+.++++++.+.++|+++|+--|. +-+.+... . ..++|++ =|+.|+
T Consensus 52 ~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~----------~~ev~~~a-~--~~~ip~~--PG~~Tp 116 (211)
T COG0800 52 LEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGL----------NPEVAKAA-N--RYGIPYI--PGVATP 116 (211)
T ss_pred HHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHH-H--hCCCccc--CCCCCH
Confidence 677999999885 556666789999999999999999954221 11222222 1 2267776 899999
Q ss_pred HHHHHHHHhCCCEEE
Q 018919 272 TDVFKALALGASGIF 286 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ 286 (349)
.++.+|+++|++.+=
T Consensus 117 tEi~~Ale~G~~~lK 131 (211)
T COG0800 117 TEIMAALELGASALK 131 (211)
T ss_pred HHHHHHHHcChhhee
Confidence 999999999998773
No 328
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.043 Score=52.63 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=67.8
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI 202 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~ 202 (349)
.+....+-...|.+.+.+.++.++++|++.+.||--+ ++.+... ..+..|+.|+.+++.
T Consensus 142 ~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRt-------r~~kg~~--------------~~pad~~~i~~v~~~ 200 (358)
T KOG2335|consen 142 VPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRT-------REQKGLK--------------TGPADWEAIKAVREN 200 (358)
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEeccc-------HHhcCCC--------------CCCcCHHHHHHHHHh
Confidence 4455555556789999999999999999999887543 2222110 112239999999999
Q ss_pred cC-CcEEEEE-ecCHHHHHHHHH-cCCCEEEEe
Q 018919 203 TK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 232 (349)
Q Consensus 203 ~~-~pv~vK~-v~~~~~a~~a~~-~G~d~I~v~ 232 (349)
.. +||++-| |.+.+++.++.+ .|+|+|-+.
T Consensus 201 ~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 201 VPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred CcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 87 9999877 688999999998 999999774
No 329
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.43 E-value=0.31 Score=46.11 Aligned_cols=109 Identities=25% Similarity=0.325 Sum_probs=74.6
Q ss_pred CHHHHHHH-HHcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHhCCCEEE
Q 018919 214 TAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 286 (349)
Q Consensus 214 ~~~~a~~a-~~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~kal~~GA~~V~ 286 (349)
+|++|+.. .+.|+|.+-++- ||..... ..| .++.|.+|.+.++ ++|++.=||=..++ ++.+++.+|..-|=
T Consensus 156 dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiN 233 (287)
T PF01116_consen 156 DPEEAKEFVEETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKIN 233 (287)
T ss_dssp SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEE
Confidence 57887775 589999999874 5543211 133 4788999998874 69999988877766 78889999999999
Q ss_pred EchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 287 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 287 ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
++|.+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 234 i~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 234 IGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp ESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977654321 00 1223444566777777788887764
No 330
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.41 E-value=0.91 Score=43.16 Aligned_cols=182 Identities=20% Similarity=0.223 Sum_probs=111.5
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHhh--------CC-CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAST--------GP-GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~~--------~~-~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+++-..+.|+.+++ | ++.+.+.+|-.+. .. -+.+.+... .+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHH
Confidence 57778887653335556666788888888977654 2 2344667664321 12 335566543 45666
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v---- 212 (349)
..++++.+++.|++++.+-- |. |.-| +++- .+..+++.+.+++|+++=.+
T Consensus 88 ai~lak~a~~~Gad~il~v~--Py-----------Y~k~------------~~~gl~~hf~~ia~a~~lPvilYN~P~~t 142 (299)
T COG0329 88 AIELAKHAEKLGADGILVVP--PY-----------YNKP------------SQEGLYAHFKAIAEAVDLPVILYNIPSRT 142 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeC--CC-----------CcCC------------ChHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 78899999999999987532 21 1101 1222 57788888889999998775
Q ss_pred ---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 213 ---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 ---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.++|...++.+. -..+-+=.. ..++..+.++....+++--++.+|+ -+.++-++.+|++++..+.
T Consensus 143 g~~l~~e~i~~la~~-~nivgiKd~--------~gd~~~~~~~~~~~~~~~f~v~~G~---d~~~~~~~~~G~~G~is~~ 210 (299)
T COG0329 143 GVDLSPETIARLAEH-PNIVGVKDS--------SGDLDRLEEIIAALGDRDFIVLSGD---DELALPALLLGADGVISVT 210 (299)
T ss_pred CCCCCHHHHHHHhcC-CCEEEEEeC--------CcCHHHHHHHHHhcCccCeeEEeCc---hHHHHHHHhCCCCeEEecc
Confidence 456888887772 222222111 1145666666665533111344442 3556777889999999988
Q ss_pred HH
Q 018919 290 PV 291 (349)
Q Consensus 290 ~~ 291 (349)
.-
T Consensus 211 ~N 212 (299)
T COG0329 211 AN 212 (299)
T ss_pred cc
Confidence 43
No 331
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.40 E-value=0.18 Score=47.56 Aligned_cols=151 Identities=23% Similarity=0.247 Sum_probs=83.6
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCC----------CCHH---H----HHhhCCCceEEEEeec
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWST----------SSVE---E----VASTGPGIRFFQLYVY 132 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~----------~~~e---~----i~~~~~~~~~~Ql~~~ 132 (349)
..|++++=++. +++.-...++.+.++|+.++ +.-.++ .+++ + +++....+.++.+-.
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~- 163 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP- 163 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-
Confidence 45777655432 23434577888888887765 321111 1122 2 222223456777632
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCch-HHHHHHHHHhcCCcEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVK 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK 210 (349)
+.+.+.+.++.++++|++++.+. ++.. +.. -|.+.. .|. +.......+...... ++.++++++.+++||+.-
T Consensus 164 -~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~~-~~~~~~--~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~ 237 (296)
T cd04740 164 -NVTDIVEIARAAEEAGADGLTLI-NTLK-GMA-IDIETR--KPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGV 237 (296)
T ss_pred -CchhHHHHHHHHHHcCCCEEEEE-CCCc-ccc-cccccC--ceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEE
Confidence 34456788889999999998652 2110 100 000000 000 000000001011123 688999999889998764
Q ss_pred -EecCHHHHHHHHHcCCCEEEEe
Q 018919 211 -GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 211 -~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.+++++.+++++|||+|.+.
T Consensus 238 GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 238 GGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEc
Confidence 4679999999999999999884
No 332
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.37 E-value=0.63 Score=42.86 Aligned_cols=178 Identities=21% Similarity=0.179 Sum_probs=100.0
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHhh-------CCCceEEEE-eecCChhHHHHHHHHHHHcC
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAST-------GPGIRFFQL-YVYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~~-------~~~~~~~Ql-~~~~~~~~~~~~~~~~~~~G 149 (349)
|...|+.+.+.|+..+..+.+ ..+++++... ...|...-+ ++..+.+...+.++++.++|
T Consensus 18 D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G 97 (243)
T cd00377 18 DALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAG 97 (243)
T ss_pred CHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 447899999999887653321 1345554332 112333222 11235566778888999999
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc----CCcEEEEE----e--cCH---
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT----KLPILVKG----V--LTA--- 215 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~----~~pv~vK~----v--~~~--- 215 (349)
+.++.+. |...+ +| .+.. ....+.+.+. .+.|+..++.. +.+|++.. . ...
T Consensus 98 ~~gv~iE-D~~~~-k~-----~g~~--------~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~ea 162 (243)
T cd00377 98 AAGIHIE-DQVGP-KK-----CGHH--------GGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEA 162 (243)
T ss_pred CEEEEEe-cCCCC-cc-----ccCC--------CCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHH
Confidence 9988762 22110 00 0000 0000223333 45566666654 34566551 1 223
Q ss_pred -HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEe--cCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 -EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD--GGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 -~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~--GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+-++.+.++|||+|.+. + +.+.+.+.++.+.. +.||++. .+-. ....-..-++|.+.|.+|...+
T Consensus 163 i~Ra~ay~~AGAD~v~v~--~-------~~~~~~~~~~~~~~--~~Pl~~~~~~~~~-~~~~~~l~~lG~~~v~~~~~~~ 230 (243)
T cd00377 163 IERAKAYAEAGADGIFVE--G-------LKDPEEIRAFAEAP--DVPLNVNMTPGGN-LLTVAELAELGVRRVSYGLALL 230 (243)
T ss_pred HHHHHHHHHcCCCEEEeC--C-------CCCHHHHHHHHhcC--CCCEEEEecCCCC-CCCHHHHHHCCCeEEEEChHHH
Confidence 44677899999999983 2 22567777777775 5666664 2221 0233344568999999999777
Q ss_pred HH
Q 018919 293 YS 294 (349)
Q Consensus 293 ~~ 294 (349)
++
T Consensus 231 ~~ 232 (243)
T cd00377 231 RA 232 (243)
T ss_pred HH
Confidence 64
No 333
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.37 E-value=0.028 Score=51.27 Aligned_cols=73 Identities=30% Similarity=0.423 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCEEEEec-CCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 215 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.+.|+.-.+.||..+.+-- .|. ..+++-..+.+.++.+.+ ++||=..||||+-+++.+.|.+|++.|.+|+..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 3778888889999887642 222 124455678999999887 799999999999999999999999999999944
No 334
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.37 E-value=0.033 Score=51.72 Aligned_cols=41 Identities=37% Similarity=0.550 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 192 MDEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 192 ~~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
..+.++++|+.++.||++.+ +.++++++.+.++|||++++.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 36789999998899999877 567999999999999999984
No 335
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.34 E-value=0.96 Score=42.63 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=72.9
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-. .+.| .++.|.+|++.+ ++|++.=||=..+ +++.|++.+|..-|
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---k~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 227 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLY---KKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKV 227 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCc---CCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4678887755 69999999874 5543 3333 578999999888 7888887776655 45667889999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 228 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 228 NVATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 00 1223344556667777777777754
No 336
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=96.34 E-value=0.055 Score=46.62 Aligned_cols=109 Identities=22% Similarity=0.236 Sum_probs=73.0
Q ss_pred hHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHH
Q 018919 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d 168 (349)
|.++-=.+......+++||-+. -+..+.. +...+|=+.--|.......++.+++.+.|++++ +..-
T Consensus 65 e~~i~fi~~~~~pdGIISTk~~----~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEv-LPGv-------- 131 (181)
T COG1954 65 EVAIEFIKEVIKPDGIISTKSN----VIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEV-LPGV-------- 131 (181)
T ss_pred hHHHHHHHHhccCCeeEEccHH----HHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEE-cCcc--------
Confidence 4444444555556666665432 2222222 333344322356667778888889999999986 2110
Q ss_pred hhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCHHHHHHHHHcCCCEEEEecC
Q 018919 169 IKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH 234 (349)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~~~a~~a~~~G~d~I~v~~~ 234 (349)
+ -+.++++.++++.||+..|. .+.|++..|+++||-++..||.
T Consensus 132 ------~-----------------Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~ 175 (181)
T COG1954 132 ------M-----------------PKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSNT 175 (181)
T ss_pred ------c-----------------HHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecch
Confidence 1 26799999999999999884 7899999999999999987764
No 337
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.33 E-value=0.71 Score=43.59 Aligned_cols=178 Identities=17% Similarity=0.123 Sum_probs=98.9
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHhh-------CCCceEEEEe-ecCChhHHHHHHHHHHHcC
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAST-------GPGIRFFQLY-VYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~~-------~~~~~~~Ql~-~~~~~~~~~~~~~~~~~~G 149 (349)
|..-|+.+.++|...+..+.. ..+++|+.+. ..-|..+-+- +..++..+.+.+++++++|
T Consensus 22 Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG 101 (285)
T TIGR02317 22 NAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAG 101 (285)
T ss_pred CHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 336778888889886643221 1244444322 2223333221 1134666778899999999
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEec------CHHH----
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVL------TAED---- 217 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~------~~~~---- 217 (349)
+.+|.|. |...+ +| .++. + ...+.+.+. .+.|+..++.. +.++++--.. ..++
T Consensus 102 ~agi~IE-Dq~~p-K~-----cgh~-~-------g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~R 166 (285)
T TIGR02317 102 AAAVHIE-DQVLP-KR-----CGHL-P-------GKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIER 166 (285)
T ss_pred CeEEEEe-cCCCc-cc-----cCCC-C-------CccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHH
Confidence 9887652 32110 00 1110 0 001223333 45566666654 3445442221 1233
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEE---EecCCCCH-HHHHHHHHhCCCEEEEchHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRG-TDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---a~GGI~~~-~dv~kal~~GA~~V~ig~~~l~ 293 (349)
++...++|||.|.+ +| +.+.+.+.++.+.+ +.|++ ..+|- ++ .++.+.-++|.+.|..|...++
T Consensus 167 a~ay~~AGAD~vfi--~g-------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~-~p~~s~~eL~~lGv~~v~~~~~~~~ 234 (285)
T TIGR02317 167 AKAYVEAGADMIFP--EA-------LTSLEEFRQFAKAV--KVPLLANMTEFGK-TPLFTADELREAGYKMVIYPVTAFR 234 (285)
T ss_pred HHHHHHcCCCEEEe--CC-------CCCHHHHHHHHHhc--CCCEEEEeccCCC-CCCCCHHHHHHcCCcEEEEchHHHH
Confidence 56688999999988 22 33567777888777 46773 33442 22 2455566799999999987776
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 235 a 235 (285)
T TIGR02317 235 A 235 (285)
T ss_pred H
Confidence 4
No 338
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.33 E-value=0.7 Score=43.76 Aligned_cols=178 Identities=13% Similarity=0.093 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCeEEe-cCC--C----------CCCHHHHHh-------hCCCceEEEEe-ecCChhHHHHHHHHHHHcC
Q 018919 91 YATARAASAAGTIMTL-SSW--S----------TSSVEEVAS-------TGPGIRFFQLY-VYKDRNVVAQLVRRAERAG 149 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~-~~~--~----------~~~~e~i~~-------~~~~~~~~Ql~-~~~~~~~~~~~~~~~~~~G 149 (349)
..-|+.+.+.|...+. |+. + ..+++|+.. ..+-|..+-+- +..++..+.+.+++++++|
T Consensus 27 a~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aG 106 (292)
T PRK11320 27 AYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAG 106 (292)
T ss_pred HHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 3677888888887663 221 1 123444322 22223333221 1136777788899999999
Q ss_pred CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEec------CHHH----
Q 018919 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVL------TAED---- 217 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~------~~~~---- 217 (349)
+.+|.|. |...+ +| .+.. ....+.+.+. .+.|+..++.- +.++++--.. ..++
T Consensus 107 aagi~IE-Dq~~p-K~-----cg~~--------~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~R 171 (292)
T PRK11320 107 AAAVHIE-DQVGA-KR-----CGHR--------PNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIER 171 (292)
T ss_pred CeEEEEe-cCCCc-cc-----cCCC--------CCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHH
Confidence 9887652 32110 11 0110 0001223332 45566665543 4455442221 1233
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEE---EecCCCCHHHHHHHHHhCCCEEEEchHHHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRGTDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---a~GGI~~~~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
++...++|||.|.+. ++.+.+.+.++.+.+ +.|++ ..+|-.-..++.+.-++|.+.|..|...+++
T Consensus 172 a~aY~eAGAD~ifi~---------~~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 172 AQAYVEAGADMIFPE---------AMTELEMYRRFADAV--KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHHHHHcCCCEEEec---------CCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 567889999999882 234577788888777 56773 3344211123444556899999999877664
No 339
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.32 E-value=0.02 Score=58.28 Aligned_cols=233 Identities=22% Similarity=0.341 Sum_probs=134.2
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... ...+++|++|.+- +..++.||+.|||...+ +..||.+.++.|..++++. ++++|+..
T Consensus 18 lt~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~~--~~~~e~~~ 89 (495)
T PTZ00314 18 LTYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIHN--NCSIEEQV 89 (495)
T ss_pred CCccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEecC--CCCHHHHH
Confidence 3599999999865 3557889998886 46788999999998765 6799999999999999953 46777654
Q ss_pred hh----CC-Cce-EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC----CCC-chhHHhhhhcC--CC--CcCcc-c
Q 018919 119 ST----GP-GIR-FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFT--LP--PFLTL-K 182 (349)
Q Consensus 119 ~~----~~-~~~-~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p----~~g-~r~~d~~~~~~--~p--~~~~~-~ 182 (349)
+. +. ... ......-.......+.++.+.+.+...+.+.-+.. ..| ...+|++..-. .+ +-++. .
T Consensus 90 ~~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~ 169 (495)
T PTZ00314 90 EEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPRE 169 (495)
T ss_pred HHHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcC
Confidence 32 21 111 11111101112334556666777877776532210 001 11233321000 00 00000 0
Q ss_pred ccCCCCCCch--HHHHHHHHHhc--CCc---------------------------------EEEEEe--cC---HHHHHH
Q 018919 183 NFQGLDLGKM--DEDVKWLQTIT--KLP---------------------------------ILVKGV--LT---AEDARI 220 (349)
Q Consensus 183 ~~~~~~~~~~--~~~i~~i~~~~--~~p---------------------------------v~vK~v--~~---~~~a~~ 220 (349)
... ...+.. .+.++.+.+.- .+| +.|... .+ .+.++.
T Consensus 170 ~lv-tv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~ 248 (495)
T PTZ00314 170 KLV-VGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAA 248 (495)
T ss_pred Cce-EeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 000 000111 12222222110 122 222222 12 366888
Q ss_pred HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 221 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 221 a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.++|+|.|.+...-|+ ....++.+.++++..+ +++|++ |.|.|.+++..++.+|||+|-+|
T Consensus 249 l~~ag~d~i~id~a~G~----s~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 249 LIEAGVDVLVVDSSQGN----SIYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHCCCCEEEEecCCCC----chHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 99999999999753232 1224678888887653 578777 89999999999999999999764
No 340
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.31 E-value=0.02 Score=52.52 Aligned_cols=39 Identities=23% Similarity=0.545 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 194 EDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
..|+.+++..++||++- ++.+++|+..+.+.|+|+|-+.
T Consensus 179 ~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 179 LNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred HHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 56888888889998775 4689999999999999999773
No 341
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.31 E-value=0.03 Score=50.74 Aligned_cols=68 Identities=25% Similarity=0.382 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEE-EecCHHHHH
Q 018919 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVK-GVLTAEDAR 219 (349)
Q Consensus 141 ~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~v~~~~~a~ 219 (349)
..+++++.|+.++.- +.+|... +.+ +.+ ...|+.+++..++||++- ++-++.+|.
T Consensus 136 ~akrL~d~GcaavMP-lgsPIGS--------------g~G------i~n---~~~l~~i~~~~~vPvIvDAGiG~pSdaa 191 (247)
T PF05690_consen 136 LAKRLEDAGCAAVMP-LGSPIGS--------------GRG------IQN---PYNLRIIIERADVPVIVDAGIGTPSDAA 191 (247)
T ss_dssp HHHHHHHTT-SEBEE-BSSSTTT-----------------------SST---HHHHHHHHHHGSSSBEEES---SHHHHH
T ss_pred HHHHHHHCCCCEEEe-ccccccc--------------CcC------CCC---HHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 577888888888652 5554321 111 122 356888888889999875 367899999
Q ss_pred HHHHcCCCEEEEe
Q 018919 220 IAVQAGAAGIIVS 232 (349)
Q Consensus 220 ~a~~~G~d~I~v~ 232 (349)
.+.|.|+|+|-+-
T Consensus 192 ~AMElG~daVLvN 204 (247)
T PF05690_consen 192 QAMELGADAVLVN 204 (247)
T ss_dssp HHHHTT-SEEEES
T ss_pred HHHHcCCceeehh
Confidence 9999999999873
No 342
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.31 E-value=0.082 Score=48.64 Aligned_cols=125 Identities=17% Similarity=0.252 Sum_probs=78.6
Q ss_pred eecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcE
Q 018919 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPI 207 (349)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv 207 (349)
|...+.+.+.+-++.+.+.|++++++.+=.+ +... .+.++++.+.. +.|+
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~----------------------------dg~vD~~~~~~Li~~a~~~~v 118 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDV----------------------------DGHVDMPRMRKIMAAAGPLAV 118 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC----------------------------CCCcCHHHHHHHHHHhcCCce
Confidence 4333445677888888999999998754221 1112 45566666655 5777
Q ss_pred EEEEe----cCHHH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC
Q 018919 208 LVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 282 (349)
Q Consensus 208 ~vK~v----~~~~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA 282 (349)
..--. .++.. .+.+.+.|++.|-.|+ |.. .....++.|.++.+..++.+ |++.|||+. +.+.+....|+
T Consensus 119 TFHRAfD~~~d~~~al~~l~~lG~~rILTSG--g~~--~a~~g~~~L~~lv~~a~~~~-Im~GgGV~~-~Nv~~l~~tG~ 192 (248)
T PRK11572 119 TFHRAFDMCANPLNALKQLADLGVARILTSG--QQQ--DAEQGLSLIMELIAASDGPI-IMAGAGVRL-SNLHKFLDAGV 192 (248)
T ss_pred EEechhhccCCHHHHHHHHHHcCCCEEECCC--CCC--CHHHHHHHHHHHHHhcCCCE-EEeCCCCCH-HHHHHHHHcCC
Confidence 65432 34444 5668999999997653 311 12233556666666554444 899999875 67777667999
Q ss_pred CEEEEc
Q 018919 283 SGIFIG 288 (349)
Q Consensus 283 ~~V~ig 288 (349)
..+=..
T Consensus 193 ~~~H~s 198 (248)
T PRK11572 193 REVHSS 198 (248)
T ss_pred CEEeeC
Confidence 887543
No 343
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.31 E-value=1 Score=42.57 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=74.5
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|++.=||=..+ +++.+++.+|..-|
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 4678887765 58999999874 4433 2333 578899998887 7999999988877 66777999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+-.+... .. ..-.....+.+++..+..|..+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 231 NVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred EeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 00 1123334456666667777777654
No 344
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.30 E-value=0.076 Score=56.89 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred cCHHHHHHHH----Hc---CCCEEEEecCCCCCCC-Cc--hhhHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHhC
Q 018919 213 LTAEDARIAV----QA---GAAGIIVSNHGARQLD-YV--PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALG 281 (349)
Q Consensus 213 ~~~~~a~~a~----~~---G~d~I~v~~~gg~~~~-~~--~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~dv~kal~~G 281 (349)
-+.+++..+. .. |+|+|.++.-..+... .. +..++.+.++++.+.. .+||++-||| +.+++.++++.|
T Consensus 109 h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~G 187 (755)
T PRK09517 109 ETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATG 187 (755)
T ss_pred CCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcC
Confidence 4666665432 23 5999999753322211 11 2246777777776621 3999999999 779999999999
Q ss_pred CCEEEEchHHHH
Q 018919 282 ASGIFIGRPVVY 293 (349)
Q Consensus 282 A~~V~ig~~~l~ 293 (349)
|++|.+-++++.
T Consensus 188 a~giAvisai~~ 199 (755)
T PRK09517 188 IDGLCVVSAIMA 199 (755)
T ss_pred CCEEEEehHhhC
Confidence 999999999873
No 345
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.29 E-value=1.1 Score=42.69 Aligned_cols=182 Identities=17% Similarity=0.118 Sum_probs=107.7
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
.|.++.|+.-.+-.+.++-..+.+-..+.|+.+++ + ++...+.||..+ ... .+.+.++. . +...
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 47778887544444555566788888888876653 2 334456665322 222 34556663 3 5667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe----
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV---- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v---- 212 (349)
+.+.++.+++.|++++.+. .|.. . + .+.+- .+..+.+.+.+++||++=..
T Consensus 90 ~i~~~~~a~~~Gadav~~~--pP~y-----------~-~-----------~~~~~i~~~f~~va~~~~lpi~lYn~~g~~ 144 (303)
T PRK03620 90 AIEYAQAAERAGADGILLL--PPYL-----------T-E-----------APQEGLAAHVEAVCKSTDLGVIVYNRDNAV 144 (303)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCC-----------C-C-----------CCHHHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 7889999999999999762 2210 0 0 01121 56677888888999987542
Q ss_pred cCHHHHHHHH-Hc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEEEEch
Q 018919 213 LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGR 289 (349)
Q Consensus 213 ~~~~~a~~a~-~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V~ig~ 289 (349)
.+++...++. +. .+-+|.-+. .++..+.++.+..++++.|+ +| -.+. ..+..++.+||++...+.
T Consensus 145 l~~~~l~~L~~~~pni~giK~s~----------~d~~~~~~~~~~~~~~f~vl-~G-~d~~e~~~~~~~~~G~~G~is~~ 212 (303)
T PRK03620 145 LTADTLARLAERCPNLVGFKDGV----------GDIELMQRIVRALGDRLLYL-GG-LPTAEVFAAAYLALGVPTYSSAV 212 (303)
T ss_pred CCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE-eC-CCcchhhHHHHHhCCCCEEEecH
Confidence 4677777776 53 233333321 13445555555554455544 33 2211 234456789999998887
Q ss_pred HHH
Q 018919 290 PVV 292 (349)
Q Consensus 290 ~~l 292 (349)
+-+
T Consensus 213 an~ 215 (303)
T PRK03620 213 FNF 215 (303)
T ss_pred Hhh
Confidence 544
No 346
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.29 E-value=0.019 Score=57.78 Aligned_cols=232 Identities=21% Similarity=0.307 Sum_probs=132.3
Q ss_pred hccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH-
Q 018919 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (349)
Q Consensus 42 ~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~- 118 (349)
+||++.|+|... ...+++|++|.+- +.+++.|++.|||...+ +..|+.+.++.|..+++.. ++++++..
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 699999999865 3456899999986 68899999999997654 6788888888888877753 34554432
Q ss_pred ---hhCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC----CCC-chhHHhhhhcC--CC--CcCccccc
Q 018919 119 ---STGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFT--LP--PFLTLKNF 184 (349)
Q Consensus 119 ---~~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p----~~g-~r~~d~~~~~~--~p--~~~~~~~~ 184 (349)
+... .....++..-.......+.++.+.+.++..+.+.=+.. ..| ...+|+..... .+ .-+.....
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~ 154 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEV 154 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCC
Confidence 2221 11111111111122344566666777877765532210 001 11233221000 00 00000000
Q ss_pred CCCCCCch--HHHHHHHHHh-----------------------------------cCCcEEEEEe-----cCHHHHHHHH
Q 018919 185 QGLDLGKM--DEDVKWLQTI-----------------------------------TKLPILVKGV-----LTAEDARIAV 222 (349)
Q Consensus 185 ~~~~~~~~--~~~i~~i~~~-----------------------------------~~~pv~vK~v-----~~~~~a~~a~ 222 (349)
. ...+.. .+.++.+++. -+..+++... .+.+.++.+.
T Consensus 155 ~-~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~ 233 (450)
T TIGR01302 155 I-TVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALV 233 (450)
T ss_pred E-EECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHH
Confidence 0 000000 1112222111 0112233322 1246788899
Q ss_pred HcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 223 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 223 ~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++|+|.|.+...-|+ ....++.+.++++.+. ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 234 ~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 234 KAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HhCCCEEEEECCCCc----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 999999999763331 2345677888877653 688888 99999999999999999999766
No 347
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.27 E-value=1.1 Score=42.41 Aligned_cols=107 Identities=18% Similarity=0.285 Sum_probs=72.3
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|++.=||=..+ +++.|+..+|..-|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~Ki 229 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKV 229 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCC---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887765 58999999874 5543 2322 578999999988 7888877765544 56677999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 230 NVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554321 00 1123334455666677777777754
No 348
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.24 E-value=0.021 Score=56.35 Aligned_cols=67 Identities=12% Similarity=0.248 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.++.+.++|+|.|++....|. +....+.+.++++.++ +++ +..|+|.|.+++.+++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998754331 2334577778877653 455 45688999999999999999999877
No 349
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.20 E-value=0.14 Score=49.32 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=84.1
Q ss_pred CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ec--C-CC-----CCC----H----HHHHhhCCCceEEEEeecC
Q 018919 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LS--S-WS-----TSS----V----EEVASTGPGIRFFQLYVYK 133 (349)
Q Consensus 71 ~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~--~-~~-----~~~----~----e~i~~~~~~~~~~Ql~~~~ 133 (349)
..|++++=.+. +++.-..+++.+.++|+.++ +. . .. ... . +++++....|.++.+.+
T Consensus 101 ~~pvi~sI~g~----~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p-- 174 (334)
T PRK07565 101 DIPVIASLNGS----SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP-- 174 (334)
T ss_pred CCcEEEEeccC----CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC--
Confidence 46776555332 33444578888888886544 21 1 00 001 1 22333223566776643
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCC-CCCchHHHHHHHHHhcCCcEE-EEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-DLGKMDEDVKWLQTITKLPIL-VKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~pv~-vK~ 211 (349)
+.+...+.++.++++|+++|.++-..+... -|....-..+. .. .++. ..+..++.+.++++..++||+ +.+
T Consensus 175 ~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~---~d~~~~~~~~~-~g---lsg~~~~~~al~~v~~~~~~~~ipIig~GG 247 (334)
T PRK07565 175 YFSNLANMAKRLDAAGADGLVLFNRFYQPD---IDLETLEVVPG-LV---LSTPAELRLPLRWIAILSGRVGADLAATTG 247 (334)
T ss_pred CchhHHHHHHHHHHcCCCeEEEECCcCCCC---cChhhcccccC-CC---CCCchhhhHHHHHHHHHHhhcCCCEEEECC
Confidence 333456788889999999998753322110 01100000000 00 0010 111116778888888899986 556
Q ss_pred ecCHHHHHHHHHcCCCEEEEe
Q 018919 212 VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+.+.+||.+++.+|||+|.+.
T Consensus 248 I~s~~Da~e~l~aGA~~V~v~ 268 (334)
T PRK07565 248 VHDAEDVIKMLLAGADVVMIA 268 (334)
T ss_pred CCCHHHHHHHHHcCCCceeee
Confidence 899999999999999999985
No 350
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.18 E-value=0.19 Score=47.58 Aligned_cols=152 Identities=23% Similarity=0.198 Sum_probs=83.9
Q ss_pred cCcceeecccccccccCChhhHHHHHHHHHcC-CeEE-ecC------C-CC---CCH---HH----HHhhCCCceEEEEe
Q 018919 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMT-LSS------W-ST---SSV---EE----VASTGPGIRFFQLY 130 (349)
Q Consensus 70 ~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G-~~~~-~~~------~-~~---~~~---e~----i~~~~~~~~~~Ql~ 130 (349)
+..|++++=++. +++.-...++.++++| +.++ +.- . +. ... .+ +++....+.++.+-
T Consensus 90 ~~~p~i~si~g~----~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGS----TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 356877665432 3444457788888888 6554 311 0 00 111 22 22222345666653
Q ss_pred ecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCC-CCCCchHHHHHHHHHhcCCcEE
Q 018919 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQG-LDLGKMDEDVKWLQTITKLPIL 208 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~-~~~~~~~~~i~~i~~~~~~pv~ 208 (349)
. +.+.+.+.++.++++|++++.+. ++. .+.+. +.+... |. +.......+ ...+..++.++++++.+++||+
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~-nt~-~g~~~-~~~~~~--~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi 238 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLI-NTL-KGMAI-DIKTRK--PILANVTGGLSGPAIKPIALRMVYQVYQAVDIPII 238 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEE-ccc-ccccc-ccccCc--eeecCCcCccCCcCcccccHHHHHHHHHhCCCCEE
Confidence 2 44456778889999999998652 111 11110 000000 00 000000000 0112227889999998899986
Q ss_pred -EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 209 -VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 209 -vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+.++.+++++.+++.+|||.|.+.
T Consensus 239 ~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 239 GMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred EECCCCCHHHHHHHHHcCCCceeEc
Confidence 445689999999999999999883
No 351
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.18 E-value=0.046 Score=49.24 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.+.|+...+.||++|.+....+. ..+ ..+.+..+++.+ ++||+.-|+|++..++..++++|||+|.++.+.+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~~g---~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-FQG---SLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-cCC---CHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 37789999999999987532211 112 235566666655 7999999999999999999999999999887543
No 352
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.17 E-value=0.11 Score=46.23 Aligned_cols=117 Identities=21% Similarity=0.109 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
+.+...+.++.+ +.|.+.++++... . ..+ .+.++.+|+.. +..+++-.
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev~~~l----------~-------------------~~~g~~~i~~l~~~~~~~~i~~d~ 59 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEIGTPL----------I-------------------KNEGIEAVKEMKEAFPDRKVLADL 59 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEeCCHH----------H-------------------HHhCHHHHHHHHHHCCCCEEEEEE
Confidence 556667777777 6788888874210 0 011 46788888875 44555432
Q ss_pred -ecCHH--HHHHHHHcCCCEEEEecCCCCCCCCchhh-HHHHHHHHHHhcCCCcEEEe-cCCCCH-HHHHHHHHhCCCEE
Q 018919 212 -VLTAE--DARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLD-GGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 212 -v~~~~--~a~~a~~~G~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~-GGI~~~-~dv~kal~~GA~~V 285 (349)
+.++. +++.+.++|+|.|+++. . ..+.. .+.+..+.+ . +++++.+ -+..+. +++..+..+|+|.|
T Consensus 60 k~~d~~~~~~~~~~~~Gad~i~vh~--~----~~~~~~~~~i~~~~~-~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v 130 (206)
T TIGR03128 60 KTMDAGEYEAEQAFAAGADIVTVLG--V----ADDATIKGAVKAAKK-H--GKEVQVDLINVKDKVKRAKELKELGADYI 130 (206)
T ss_pred eeccchHHHHHHHHHcCCCEEEEec--c----CCHHHHHHHHHHHHH-c--CCEEEEEecCCCChHHHHHHHHHcCCCEE
Confidence 23543 68999999999999842 2 11112 233333332 2 6777765 355554 67777888899999
Q ss_pred EEch
Q 018919 286 FIGR 289 (349)
Q Consensus 286 ~ig~ 289 (349)
.+..
T Consensus 131 ~~~p 134 (206)
T TIGR03128 131 GVHT 134 (206)
T ss_pred EEcC
Confidence 8864
No 353
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.15 E-value=0.18 Score=45.62 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
...+.++.+++.|++.+.++-... . .. + ..+..|+.++++++..++||++-+ +.++
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~-----~-----~~--~-----------~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~ 195 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTR-----E-----QR--Y-----------SGPADWDYIAEIKEAVSIPVIANGDIFSL 195 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCH-----H-----Hc--C-----------CCCCCHHHHHHHHhCCCCeEEEeCCCCCH
Confidence 667888899999999987653211 0 00 0 011127889999998899988755 5799
Q ss_pred HHHHHHHHc-CCCEEEEe
Q 018919 216 EDARIAVQA-GAAGIIVS 232 (349)
Q Consensus 216 ~~a~~a~~~-G~d~I~v~ 232 (349)
+++..+.+. |+|+|.+.
T Consensus 196 ~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 196 EDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 999999997 89999883
No 354
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.10 E-value=0.17 Score=48.05 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=61.9
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccc----ccCCCCCCch-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK----NFQGLDLGKM-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~----~~~~~~~~~~-~~~i~ 197 (349)
.|.++.|-. +.+...+.++.++++|+++|.+. ++-. +...-|....-..+ .+..+ ...|--.... |+.|.
T Consensus 169 ~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~~-~~~~~~~~gg~sG~a~~p~~l~~v~ 243 (299)
T cd02940 169 IPVIAKLTP--NITDIREIARAAKEGGADGVSAI-NTVN-SLMGVDLDGTPPAP-GVEGKTTYGGYSGPAVKPIALRAVS 243 (299)
T ss_pred CCeEEECCC--CchhHHHHHHHHHHcCCCEEEEe-cccc-cccccccccCCccc-cccCCCCcCcccCCCcchHHHHHHH
Confidence 467777643 44456788899999999998752 1110 00000000000000 00000 0111111223 88999
Q ss_pred HHHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.+ ++||+ ..++.+.+++.+++.+|||+|.+.
T Consensus 244 ~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 244 QIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVC 281 (299)
T ss_pred HHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEc
Confidence 999999 89975 445789999999999999999884
No 355
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.08 E-value=0.059 Score=52.19 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+-+..+.++|+|.|++...-|+ .....+.+.++++..+ ++||| .|.|-|++-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 47788899999999999753221 2334677888887764 78888 577999999988888999999998
No 356
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.08 E-value=1.3 Score=41.82 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=76.2
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+... +.|+|.+-++. ||.+. ..|. .++.|.+|.+.+ ++|++.=||=..+ +++.+++..|..-|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 3678887766 48999999874 55432 2233 688999999988 7999999988888 57778999999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|.+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 00 1223344556677777777777754
No 357
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=96.08 E-value=1.3 Score=41.78 Aligned_cols=179 Identities=16% Similarity=0.112 Sum_probs=106.6
Q ss_pred cceeecccccccccCChhhHHHHHHHHH-cCCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChh
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASA-AGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRN 136 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~-~G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~ 136 (349)
.|.++.|+.-.+-.+.++-..+.+-..+ .|+.+++ + ++.+.+.+|..+ ... .+.++++.. .+.+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHH
Confidence 4777788765444555666678888888 8876553 2 334556666332 222 345666533 4556
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe---
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV--- 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v--- 212 (349)
...++++.+++.|++++.+.- |.. . +. +++- .+..+.+.+.+++||++=..
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~--P~y-----------~-~~-----------~~~~l~~~f~~va~a~~lPv~iYn~P~~ 141 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT--PFY-----------Y-PF-----------SFEEICDYYREIIDSADNPMIVYNIPAL 141 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC--CcC-----------C-CC-----------CHHHHHHHHHHHHHhCCCCEEEEeCchh
Confidence 677889999999999988642 311 0 10 1122 56678888888999988654
Q ss_pred ----cCHHHHHHHHHc-CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 213 ----LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ----~~~~~a~~a~~~-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+++...++.+. .+-+|.-+. ..+..+.++.+..+ +..|+ +|. ..-+...+.+|+++++.
T Consensus 142 tg~~l~~~~l~~L~~~pnvvgiK~s~----------~d~~~~~~~~~~~~-~~~v~-~G~---d~~~~~~l~~G~~G~is 206 (293)
T PRK04147 142 TGVNLSLDQFNELFTLPKVIGVKQTA----------GDLYQLERIRKAFP-DKLIY-NGF---DEMFASGLLAGADGAIG 206 (293)
T ss_pred hccCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCC-CCEEE-Eee---hHHHHHHHHcCCCEEEe
Confidence 356777777653 222332221 12344445555443 44443 342 24466788899999988
Q ss_pred chHH
Q 018919 288 GRPV 291 (349)
Q Consensus 288 g~~~ 291 (349)
+..-
T Consensus 207 ~~~n 210 (293)
T PRK04147 207 STYN 210 (293)
T ss_pred chhh
Confidence 7743
No 358
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.069 Score=48.23 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 194 EDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
..|+-++++.++||+|- ++-++.+|-.+.|.|+|+|.+-
T Consensus 172 ~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 172 YNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 56888888889999875 3678999999999999999773
No 359
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.04 E-value=0.15 Score=47.49 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++++|+.+++|+++.. +.++++++.+.+. ||+++|..
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 5679999998899999876 5799999999986 99999953
No 360
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.99 E-value=0.23 Score=47.53 Aligned_cols=72 Identities=21% Similarity=0.386 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCH
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTA 215 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~ 215 (349)
.+.+.++++++.|++.|.+|-..+. .++ ..+..|+.++++++.+++||+.-+ +.++
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~---------~~~--------------~~~~~~~~i~~i~~~~~ipvi~nGgI~~~ 204 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRA---------QGY--------------SGEANWDIIARVKQAVRIPVIGNGDIFSP 204 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEccccc---------ccC--------------CCchhHHHHHHHHHcCCCcEEEeCCCCCH
Confidence 3567888999999999987632210 011 012228889999999999987644 6899
Q ss_pred HHHHHHH-HcCCCEEEE
Q 018919 216 EDARIAV-QAGAAGIIV 231 (349)
Q Consensus 216 ~~a~~a~-~~G~d~I~v 231 (349)
+++..++ ..|+|+|.+
T Consensus 205 ~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 205 EDAKAMLETTGCDGVMI 221 (319)
T ss_pred HHHHHHHHhhCCCEEEE
Confidence 9999998 589999988
No 361
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.99 E-value=0.16 Score=48.59 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=52.5
Q ss_pred HHHHHHHHcC--CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~~G--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.+..+.++| +|.|++...-|+ ....++.+.++++.. ..|.+..|.|-+++++..++.+|||+|.+|
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4467788889 799999753221 234567788887766 568888999999999999999999999887
No 362
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.99 E-value=0.11 Score=50.38 Aligned_cols=99 Identities=22% Similarity=0.209 Sum_probs=64.1
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc-CCCCCC---ch-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF-QGLDLG---KM-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~-~~~~~~---~~-~~~i~ 197 (349)
.|.++.|-...+.+.+.+.++.++++|+++|.++-..... . ++. -+. ..+. .++-.+ .. |+.++
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~--~--~~~----~~~---~~~~~gg~SG~~~~~~~l~~v~ 280 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR--D--GLK----GLP---NADEAGGLSGRPLFERSTEVIR 280 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc--c--ccc----ccc---cCCCCCCcccHHHHHHHHHHHH
Confidence 4677777644444457788899999999999875433210 0 000 000 0000 011111 12 77899
Q ss_pred HHHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.. ++||+ +.++.+.+++.+.+.+|||+|.+.
T Consensus 281 ~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 281 RLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 999988 78986 667899999999999999999774
No 363
>PTZ00411 transaldolase-like protein; Provisional
Probab=95.97 E-value=0.63 Score=44.86 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhc--C
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ--G 258 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~--~ 258 (349)
+.++.+.+. ++++-+-.+.+...|..|.++|++.|... =||-.+ .+.+....+.++.+..+ +
T Consensus 151 ~Aa~~L~~e-GI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g 227 (333)
T PTZ00411 151 QAAKALEKE-GIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHG 227 (333)
T ss_pred HHHHHHHHC-CCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHHHHcC
Confidence 445666554 89998888999999999999999988764 122111 13344566666666542 2
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 259 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
--..|....+|+..++.+ .+|||.+-|.-.++..+..
T Consensus 228 ~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 228 YKTIVMGASFRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred CCeEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 234566666999999987 4899999999888876643
No 364
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.94 E-value=0.62 Score=41.87 Aligned_cols=156 Identities=22% Similarity=0.291 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCeE---EecCCCC--CCHHHHH---hhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018919 92 ATARAASAAGTIM---TLSSWST--SSVEEVA---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (349)
Q Consensus 92 ~la~aa~~~G~~~---~~~~~~~--~~~e~i~---~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g 163 (349)
.=+++|.++|+.+ ++...|+ .++++.+ ...|....+-+|.+.+.+. ..+.+++.+.+++.+|-+-+
T Consensus 13 eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~---i~~i~~~~~ld~VQlHG~e~--- 86 (208)
T COG0135 13 EDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEE---ILEIAEELGLDAVQLHGDED--- 86 (208)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHH---HHHHHHhcCCCEEEECCCCC---
Confidence 4456666666443 2222232 3455433 3333233556676655544 34455677899998875421
Q ss_pred chhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecCH---HHHHHHHHcCCCEEEEecC-----C
Q 018919 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLTA---EDARIAVQAGAAGIIVSNH-----G 235 (349)
Q Consensus 164 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~~---~~a~~a~~~G~d~I~v~~~-----g 235 (349)
.+.++++++..++||+--..... .........-+|.+.+... |
T Consensus 87 -----------------------------~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~G 137 (208)
T COG0135 87 -----------------------------PEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPG 137 (208)
T ss_pred -----------------------------HHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCC
Confidence 46788888887888873333222 2344455566899999874 3
Q ss_pred CCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCC-CEEEEchH
Q 018919 236 ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA-SGIFIGRP 290 (349)
Q Consensus 236 g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA-~~V~ig~~ 290 (349)
|+ +-.-+|+.+... ....|++..||+ +++.|.+|++++. .+|=+.|-
T Consensus 138 Gt---G~~fDW~~l~~~----~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 138 GT---GQTFDWNLLPKL----RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred CC---CcEECHHHhccc----cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 32 223356666554 126789999997 5699999999987 88887764
No 365
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.92 E-value=1.6 Score=41.28 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=72.2
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCchh--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 285 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~kal~~GA~~V 285 (349)
.+|++|+.-. +.|+|.+-++. ||.. .+.| .++.|.++++.+ ++|++.=||=..+ +++.|++.+|..-|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 3678887765 68999999874 5543 3333 578899998887 7898887776655 45667899999999
Q ss_pred EEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 018919 286 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 286 ~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 324 (349)
=++|-+..+... .. ..-.....+.+++..+..|..+|..
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 00 1123344456666677777777653
No 366
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.92 E-value=0.043 Score=49.84 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH--hCCCEEEEchHHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~--~GA~~V~ig~~~l 292 (349)
.+.|+...+.|+|.+.+..--+. .+.+..++.+.++.+. +|+..+|||++.+|+.+++. .||+-|.+||..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 36678888999999987543221 1445567888888774 58999999999999988865 2799999999754
No 367
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.14 Score=49.32 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=61.3
Q ss_pred ceEEEEeecCCh-h-HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHH
Q 018919 124 IRFFQLYVYKDR-N-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQT 201 (349)
Q Consensus 124 ~~~~Ql~~~~~~-~-~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (349)
|..+.+-...|. + ...+.++.++++|++++.||..+.. ..+. .+..|+.|+++++
T Consensus 138 PVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~---------~~y~--------------~~ad~~~I~~vk~ 194 (323)
T COG0042 138 PVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRA---------QGYL--------------GPADWDYIKELKE 194 (323)
T ss_pred CeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHH---------hcCC--------------CccCHHHHHHHHH
Confidence 444444333333 3 3567888889999999999875531 1111 1222999999999
Q ss_pred hcC-CcEEEEE-ecCHHHHHHHHH-cCCCEEEEe
Q 018919 202 ITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 232 (349)
Q Consensus 202 ~~~-~pv~vK~-v~~~~~a~~a~~-~G~d~I~v~ 232 (349)
..+ +||+.-+ |.++++|+.+++ .|+|+|.+.
T Consensus 195 ~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 195 AVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred hCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 998 9999876 579999999887 679999884
No 368
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.82 E-value=0.13 Score=49.21 Aligned_cols=86 Identities=8% Similarity=0.197 Sum_probs=60.8
Q ss_pred ceEEEEeec-CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHH
Q 018919 124 IRFFQLYVY-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQT 201 (349)
Q Consensus 124 ~~~~Ql~~~-~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~ 201 (349)
+..+.+-.. .+.+...+.++.++++|++.|.||-.+.. ++|. .+.. |+.++++++
T Consensus 135 pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y~--------------g~~~~~~~i~~ik~ 191 (312)
T PRK10550 135 PVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGYR--------------AEHINWQAIGEIRQ 191 (312)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCCC--------------CCcccHHHHHHHHh
Confidence 555654322 23344678999999999999988753321 1121 1222 889999999
Q ss_pred hcCCcEEEEE-ecCHHHHHHHH-HcCCCEEEEe
Q 018919 202 ITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 232 (349)
Q Consensus 202 ~~~~pv~vK~-v~~~~~a~~a~-~~G~d~I~v~ 232 (349)
..++||+.-| +.++++++.++ +.|||+|.+.
T Consensus 192 ~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 192 RLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred hcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 9999987654 68999999977 5889999883
No 369
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=95.81 E-value=0.52 Score=47.63 Aligned_cols=210 Identities=21% Similarity=0.283 Sum_probs=106.7
Q ss_pred ccccccCC-CCCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHH-------HHHh
Q 018919 48 FRPRILID-VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE-------EVAS 119 (349)
Q Consensus 48 l~p~~l~~-~~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e-------~i~~ 119 (349)
+-|+.... ...+.++|.|-.+.=-.|+++|.|.-.+ .+..+..|++++|--.=+...+-.+.| .+..
T Consensus 10 yaPklvk~~~Gr~~v~TkfsrLtGr~PillaGMTPtT-----Vdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~ 84 (717)
T COG4981 10 YAPKLVKLPDGRVKVSTKFSRLTGRSPILLAGMTPTT-----VDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVS 84 (717)
T ss_pred hCcceEecCCCcEEEeechhhhcCCCCeeecCCCCCc-----CCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHh
Confidence 34665543 2345556665443334699999996544 245788888888866555433333322 2221
Q ss_pred h-CCCc-eEE-EEeecCChhH------HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCC
Q 018919 120 T-GPGI-RFF-QLYVYKDRNV------VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (349)
Q Consensus 120 ~-~~~~-~~~-Ql~~~~~~~~------~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 190 (349)
. .|+. .-| -+|. |+-. -..+++.+++.|+..-.+++..- +|. .
T Consensus 85 ~lepG~t~qfN~ifl--dpylw~~qig~krLv~kara~G~~I~gvvIsAG--------------IP~------------l 136 (717)
T COG4981 85 LLEPGRTAQFNSIFL--DPYLWKLQIGGKRLVQKARASGAPIDGVVISAG--------------IPS------------L 136 (717)
T ss_pred ccCCCccceeeEEEe--chHHhhhcCChHHHHHHHHhcCCCcceEEEecC--------------CCc------------H
Confidence 1 1221 112 1232 3322 23577888888865544444321 111 0
Q ss_pred ch-HHHHHHHHHhcCCcEE-EEEecCHHHHHH----HHHcCCCEEEEecCCCCCC------CCchhhHHHHHHHHHHhcC
Q 018919 191 KM-DEDVKWLQTITKLPIL-VKGVLTAEDARI----AVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQG 258 (349)
Q Consensus 191 ~~-~~~i~~i~~~~~~pv~-vK~v~~~~~a~~----a~~~G~d~I~v~~~gg~~~------~~~~~~~~~l~~i~~~~~~ 258 (349)
+. .+.|+.+-. -++|-+ .| --+.|.++. |-+.----|++.-.|||.. |-..+-+....++++. +
T Consensus 137 e~A~ElI~~L~~-~G~~yv~fK-PGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~--~ 212 (717)
T COG4981 137 EEAVELIEELGD-DGFPYVAFK-PGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSR--D 212 (717)
T ss_pred HHHHHHHHHHhh-cCceeEEec-CCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcC--C
Confidence 11 223333322 255532 23 223343322 2222222344443444420 1111222333444332 4
Q ss_pred CCcEEEecCCCCHHHHHHHHH------hC-----CCEEEEchHHHHH
Q 018919 259 RIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 294 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~------~G-----A~~V~ig~~~l~~ 294 (349)
++.+|+.|||.+++|...+|- .| .|++.+|++.+..
T Consensus 213 NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 213 NIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred CEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 799999999999999987762 23 6999999988753
No 370
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.79 E-value=0.11 Score=49.73 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHHHcC--CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 215 AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 215 ~~~a~~a~~~G--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
.+-++.+.++| +|.|++...-|+ ....++.+..+++..+ -+.+..|-|-+++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p--~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP--EHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC--CCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 45678888885 999999764332 2335677888877663 35666677999999999999999999877
No 371
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.77 E-value=0.88 Score=44.91 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhc---
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ--- 257 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~--- 257 (349)
+.++.+.+. ++++-+-.+.+.+.|..|.++|++.|... =||-.+ ...|....+.++.+..+
T Consensus 145 ~A~~~L~~~-GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~ 221 (391)
T PRK12309 145 KAAEVLEKE-GIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFG 221 (391)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcC
Confidence 445566543 89998888999999999999999988763 222111 11234556666666553
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+..|++ ..+|+..++.+ .+|||.+-|.-.++..+.
T Consensus 222 ~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 257 (391)
T PRK12309 222 YKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQLR 257 (391)
T ss_pred CCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHHH
Confidence 2344554 45999999987 589999999988876653
No 372
>PLN02417 dihydrodipicolinate synthase
Probab=95.76 E-value=0.08 Score=49.80 Aligned_cols=92 Identities=18% Similarity=0.296 Sum_probs=60.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-... +..-..+.+..+++.+.+++||++.=|=.+-.|+++ |-++|||+|++-.|++
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 45577899999999766442111 111123445555666667899997777666777765 3458999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GK---TSQEGLIKHFETVLD 124 (280)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 63 245666666655544
No 373
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.75 E-value=0.067 Score=49.65 Aligned_cols=39 Identities=36% Similarity=0.475 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++++|+.+++|+.+.. +.++++++++.++ +|+|+|.
T Consensus 194 ~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 194 KELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred HHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 5679999999999999875 6899999999999 9999994
No 374
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.75 E-value=0.079 Score=50.22 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=61.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-... +..-..+.+..+++.+.+++||++.=|-.+-.|.++ |-++|||+|++..|++
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 45677899999999765442111 112234555666666677899997777677777654 4458999999999998
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 456666666665554
No 375
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.75 E-value=0.19 Score=46.32 Aligned_cols=98 Identities=22% Similarity=0.345 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCcEEEEEec---CH----HHHHHHHHcCCCEEEEec--------C-CCCCCCCchhhHHHHHHHHHHh
Q 018919 193 DEDVKWLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIVSN--------H-GARQLDYVPATIMALEEVVKAT 256 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~---~~----~~a~~a~~~G~d~I~v~~--------~-gg~~~~~~~~~~~~l~~i~~~~ 256 (349)
...++.+...+.+|+++-+-. +. +.++++.++|+++|.+-. | |+..+-.-....+.+..++++.
T Consensus 58 ~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~ 137 (243)
T cd00377 58 LAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDAR 137 (243)
T ss_pred HHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHH
Confidence 456788888889998875432 33 446778889999999932 1 1111111111233444445554
Q ss_pred cC--CCcEEEe--------cCCCCHHHHHH-HHHhCCCEEEEchH
Q 018919 257 QG--RIPVFLD--------GGVRRGTDVFK-ALALGASGIFIGRP 290 (349)
Q Consensus 257 ~~--~ipvia~--------GGI~~~~dv~k-al~~GA~~V~ig~~ 290 (349)
.+ +++|++- .|+...-.-.+ +.++|||+|++-.+
T Consensus 138 ~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 138 DDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred hccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 44 6888877 33333333333 44589999998754
No 376
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.69 E-value=1.6 Score=42.22 Aligned_cols=127 Identities=22% Similarity=0.316 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCcEEEEEec--CHHHH----HHHHHcCCCEEEEecCCCCCCCC-ch--hhHHHHHHHHHHhcCCCcEE
Q 018919 193 DEDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~--~~~~a----~~a~~~G~d~I~v~~~gg~~~~~-~~--~~~~~l~~i~~~~~~~ipvi 263 (349)
.+.++++-+ ++.||++|.-+ +.++. +.....|-+-+++--.|.+.... .. ..+..++.+++.. ..|||
T Consensus 190 ~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 455666654 69999999863 56653 44556788777775445544321 12 2456666666654 69999
Q ss_pred EecCCCCH------HHHHHHHHhCCCEEEEchHHHHHHh-hcCHHHH-HHHHHHHHHHHHHHHHHcC
Q 018919 264 LDGGVRRG------TDVFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEFELAMALSG 322 (349)
Q Consensus 264 a~GGI~~~------~dv~kal~~GA~~V~ig~~~l~~~~-~~G~~gv-~~~l~~l~~el~~~m~~~G 322 (349)
++..=.++ .-...|+++|||+++|-.-+--.-+ +.|...+ -+-++.+.++++..-..+|
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 87654444 3456788899999999875432111 2232211 1234556666666555555
No 377
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.67 E-value=0.16 Score=48.86 Aligned_cols=72 Identities=18% Similarity=0.369 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-ecC
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG-VLT 214 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~-v~~ 214 (349)
...+.++.++++|+++|.+|-.+. +. ...... |+.++++++.+++||+.-+ +.+
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~---------------~~---------~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s 205 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTR---------------AC---------LFNGEAEYDSIRAVKQKVSIPVIANGDITD 205 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcc---------------cc---------ccCCCcChHHHHHHHHhcCCcEEEeCCCCC
Confidence 466888899999999998764220 00 011112 8999999999999987654 679
Q ss_pred HHHHHHHHH-cCCCEEEEe
Q 018919 215 AEDARIAVQ-AGAAGIIVS 232 (349)
Q Consensus 215 ~~~a~~a~~-~G~d~I~v~ 232 (349)
+++++.+.+ .|+|+|.++
T Consensus 206 ~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 206 PLKARAVLDYTGADALMIG 224 (321)
T ss_pred HHHHHHHHhccCCCEEEEC
Confidence 999999997 799999883
No 378
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=95.66 E-value=0.91 Score=43.41 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCC-------------chhhHHHHHHHHHHhc---
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKATQ--- 257 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~~--- 257 (349)
+.++.+.+. ++++-+-.+.+.+.+..|.++|++.|... =||-.++ ..+....+.++.+..+
T Consensus 139 ~A~~~L~~~-GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~ 215 (313)
T cd00957 139 QAAKQLEKE-GIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFG 215 (313)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcC
Confidence 445566554 89999888999999999999999988764 1221111 1234556666665542
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+..|+ ...+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 216 ~~T~vm-aASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 216 YKTKVM-GASFRNIGQILA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred CCcEEE-ecccCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence 234444 556999999986 589999999998887764
No 379
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.64 E-value=0.056 Score=55.12 Aligned_cols=235 Identities=19% Similarity=0.265 Sum_probs=130.0
Q ss_pred Hhhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHH
Q 018919 40 RNAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (349)
Q Consensus 40 ~~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i 117 (349)
..+||++.|+|... ...+++|++|.+- ...+..||+.|||.+.+ +..||.+.++.|..++++. ..+.|+.
T Consensus 21 ~ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q 92 (505)
T PLN02274 21 SYTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQ 92 (505)
T ss_pred CCCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHH
Confidence 35799999999865 3456888887775 35677899999998765 6689999999998887764 3455554
Q ss_pred Hh----hCC-CceEE-EEeecCChhHHHHHHHHHHHcCCCEEEEecCC----CCCC-chhHHhhhh---------cCCCC
Q 018919 118 AS----TGP-GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNR---------FTLPP 177 (349)
Q Consensus 118 ~~----~~~-~~~~~-Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~----p~~g-~r~~d~~~~---------~~~p~ 177 (349)
.. ... ...+. ....-.......+.++.+.+.++..+.|.=+. -..| ...+|++.. +..+.
T Consensus 93 ~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~ 172 (505)
T PLN02274 93 AAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSD 172 (505)
T ss_pred HHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccC
Confidence 32 211 10000 00010111233455666667777776653220 0001 112333210 00000
Q ss_pred --cCcccccC--------------C---CCCC--c----h-HHHHHHHHHhc---------CCcEEEEE-e----cCHHH
Q 018919 178 --FLTLKNFQ--------------G---LDLG--K----M-DEDVKWLQTIT---------KLPILVKG-V----LTAED 217 (349)
Q Consensus 178 --~~~~~~~~--------------~---~~~~--~----~-~~~i~~i~~~~---------~~pv~vK~-v----~~~~~ 217 (349)
-++..... . ..|. . . .+++.+..+.- ...+.+.- + ...|-
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r 252 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKER 252 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHH
Confidence 00000000 0 0000 0 0 12222222110 11233332 1 12367
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++.+.++|+|.|.+....|. ....++.+.++++..+ +.+| ..|+|.|.+++..++++|||+|.+|
T Consensus 253 ~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 253 LEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 88999999999999764332 2335678888887652 3444 4578999999999999999999775
No 380
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.64 E-value=0.2 Score=48.82 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHcCCeEEecCCCCC--------CHHHHHhhCC---CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEec
Q 018919 89 GEYATARAASAAGTIMTLSSWSTS--------SVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (349)
Q Consensus 89 ~~~~la~aa~~~G~~~~~~~~~~~--------~~e~i~~~~~---~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~ 157 (349)
.-..+++.+.+.|+.. +.-+... +++.+++... +...+-+.+-.+.+...++++++.+.|+|-|++.
T Consensus 99 vVe~Fv~ka~~nGidv-fRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciK- 176 (472)
T COG5016 99 VVEKFVEKAAENGIDV-FRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIK- 176 (472)
T ss_pred HHHHHHHHHHhcCCcE-EEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEee-
Confidence 3458999999999884 3333221 1222222221 1112222223456778889999999999998862
Q ss_pred CCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe----cCHHHHHHHHHcCCCEEEEe
Q 018919 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 158 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v----~~~~~a~~a~~~G~d~I~v~ 232 (349)
|. +|+.+|.. .+.|+.+|+.+++||-+-.= .+.-...+|.++|+|.|...
T Consensus 177 Dm-------------------------aGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 177 DM-------------------------AGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred cc-------------------------cccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhh
Confidence 21 12346666 78999999999999987653 23344577999999999864
No 381
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.64 E-value=0.31 Score=46.99 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
++.+.+.++..+++++. .+.+.+.+..+.+.|++.+.|... ....+..|..+++. +.|||.+-|..+-+
T Consensus 78 ~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~~---gkPvilStGmatl~ 146 (329)
T TIGR03569 78 HRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIARF---GKPVILSTGMATLE 146 (329)
T ss_pred HHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCcEEEECCCCCHH
Confidence 34566666777898875 567889999999999999999532 12245667766653 78999999999999
Q ss_pred HHHHHHH
Q 018919 273 DVFKALA 279 (349)
Q Consensus 273 dv~kal~ 279 (349)
++..|+.
T Consensus 147 Ei~~Av~ 153 (329)
T TIGR03569 147 EIEAAVG 153 (329)
T ss_pred HHHHHHH
Confidence 9988775
No 382
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.60 E-value=2.1 Score=40.36 Aligned_cols=179 Identities=17% Similarity=0.120 Sum_probs=103.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHc-CCeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChhH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAA-GTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~-G~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~~ 137 (349)
|..+.|+.-.+-.+.++-..+++-..+. |+.+++ + ++...+.+|..+ ... -+.++++-. .+.+.
T Consensus 6 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ 84 (288)
T cd00954 6 AALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKE 84 (288)
T ss_pred eceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHH
Confidence 5566676433334445556777777777 866553 2 334456665322 222 234555432 35566
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhc-CCcEEEEEe---
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTIT-KLPILVKGV--- 212 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~-~~pv~vK~v--- 212 (349)
..++++.+++.|++++.+.- |.. .+ .+.+ ..+..+.+.+.+ ++||++=..
T Consensus 85 ai~~a~~a~~~Gad~v~~~~--P~y------------~~-----------~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~ 139 (288)
T cd00954 85 SQELAKHAEELGYDAISAIT--PFY------------YK-----------FSFEEIKDYYREIIAAAASLPMIIYHIPAL 139 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeC--CCC------------CC-----------CCHHHHHHHHHHHHHhcCCCCEEEEeCccc
Confidence 77888999999999987632 211 01 0112 256788888888 899987543
Q ss_pred ----cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 018919 213 ----LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 213 ----~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~i 287 (349)
.+++...++.+.. +-+|.-+ .+ .+..+.++.+..++++.|+... ...+..++.+||++.+.
T Consensus 140 tg~~l~~~~~~~L~~~pnivgiK~s--------~~--d~~~~~~~~~~~~~~~~v~~G~----d~~~~~~~~~G~~G~i~ 205 (288)
T cd00954 140 TGVNLTLEQFLELFEIPNVIGVKFT--------AT--DLYDLERIRAASPEDKLVLNGF----DEMLLSALALGADGAIG 205 (288)
T ss_pred cCCCCCHHHHHHHhcCCCEEEEEeC--------CC--CHHHHHHHHHhCCCCcEEEEec----hHHHHHHHHcCCCEEEe
Confidence 3567777777632 1222221 11 2344455555544355555332 24566788899999988
Q ss_pred chHH
Q 018919 288 GRPV 291 (349)
Q Consensus 288 g~~~ 291 (349)
|...
T Consensus 206 ~~~n 209 (288)
T cd00954 206 STYN 209 (288)
T ss_pred Chhh
Confidence 8643
No 383
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.60 E-value=1.9 Score=42.01 Aligned_cols=209 Identities=18% Similarity=0.176 Sum_probs=104.0
Q ss_pred ceeEcC-eecCcceeecccccccccCChh-----hHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCCh
Q 018919 62 NTTVLG-FKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDR 135 (349)
Q Consensus 62 s~~l~g-~~~~~Pi~iApm~~~~l~~~~~-----~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~ 135 (349)
..+|.+ +++++-|+.|||+.. ..+.++ ...+-+.-++ |+.+++++....+.+ ....++ ..-+|.....
T Consensus 4 P~~ig~g~~lkNRiv~apm~~~-~~~~~G~~t~~~~~yy~~rA~-g~glIi~e~~~v~~~--~~~~~~--~~~~~~d~~i 77 (353)
T cd04735 4 PFTLKNGVTLKNRFVMAPMTTY-SSNPDGTITDDELAYYQRRAG-GVGMVITGATYVSPS--GIGFEG--GFSADDDSDI 77 (353)
T ss_pred CEEcCCCeEEeCcceecccccC-ccCCCCCCCHHHHHHHHHHhC-CCCEEEECceEECcc--cCcCCC--CceecChhhh
Confidence 367777 999999999999632 222221 2232222223 455566544322211 011121 1223333334
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhH-Hhhhh--cCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIKNR--FTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~-d~~~~--~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
+.+.++++.+.+.|+..+ +-+.++ |.... +...+ ...|..+.........-..+ .++|+++.+.+
T Consensus 78 ~~~~~l~~~vh~~G~~i~-~QL~h~--G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f-------- 146 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAI-LQIFHA--GRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAF-------- 146 (353)
T ss_pred HHHHHHHHHHHhCCCeEE-EEecCC--CCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHH--------
Confidence 556778888888898764 445443 21100 00000 00011000000000011123 56677777653
Q ss_pred ecCHHHHHHHHHcCCCEEEEec-CCC------------CC-CCCchh------hHHHHHHHHHHhc----CCCcEEE---
Q 018919 212 VLTAEDARIAVQAGAAGIIVSN-HGA------------RQ-LDYVPA------TIMALEEVVKATQ----GRIPVFL--- 264 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v~~-~gg------------~~-~~~~~~------~~~~l~~i~~~~~----~~ipvia--- 264 (349)
.+-|++|.++|+|+|-+.. ||. |. .++|.. ..+.+..++++++ .+++|..
T Consensus 147 ---~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 147 ---GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred ---HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence 2668899999999999963 332 11 123321 3456666666665 3455443
Q ss_pred -----ecCCCC--HHHHHHHHH-hCCCEEEEchH
Q 018919 265 -----DGGVRR--GTDVFKALA-LGASGIFIGRP 290 (349)
Q Consensus 265 -----~GGI~~--~~dv~kal~-~GA~~V~ig~~ 290 (349)
.||+.. ..++++.|+ .|+|.+-|...
T Consensus 224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 456542 234556665 79999998653
No 384
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.59 E-value=0.09 Score=50.22 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=60.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH----HhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal----~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-... +-.-..+.+..+++.+++++|||+.=|=.+-.|+++.. .+|||+|++-.|++
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 45577899999999765442111 11112345555666677789999877766667776533 47999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+.. .++++.++++.+.+.
T Consensus 115 ~~~---~~~~l~~yf~~va~a 132 (309)
T cd00952 115 LPL---DVDTAVQFYRDVAEA 132 (309)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 345665555555443
No 385
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=95.57 E-value=0.17 Score=48.32 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCeEEecCCCCCCHHHH------HhhCCCceEEEEee-------cCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 92 ATARAASAAGTIMTLSSWSTSSVEEV------ASTGPGIRFFQLYV-------YKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~~~~~~e~i------~~~~~~~~~~Ql~~-------~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
.+.......++...-.|....+-+|- ++...+..|+.|=. ..|...+.+..+.+.+.|+..+.+..|
T Consensus 127 ~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~ 206 (326)
T PRK11840 127 MLTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSD 206 (326)
T ss_pred hHHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34445555555443334333444432 11112445666532 123344445555555558888777777
Q ss_pred CCCCCchhHHhhhhcCCC--CcCcccccCCCCCCchHHHHHHHHHhcCCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 159 TPRLGRREADIKNRFTLP--PFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p--~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.|..+.+..++.-..-+| .-++ ...+..+ .+.|+.+++..++||++- ++.+++|+..+.+.|+|++-+.
T Consensus 207 d~~~a~~l~~~g~~avmPl~~pIG--sg~gv~~---p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 207 DPIAAKRLEDAGAVAVMPLGAPIG--SGLGIQN---PYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred CHHHHHHHHhcCCEEEeecccccc--CCCCCCC---HHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 776666655542211112 1111 1111223 356777777788998875 3689999999999999999773
No 386
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=95.57 E-value=1.8 Score=39.54 Aligned_cols=123 Identities=21% Similarity=0.257 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++.+|+++|.+|+-- |.. . .+++..+++..+.|+-+-+..+.|
T Consensus 25 v~aA~~a~~aGAdgITvHlRe-----------------------------DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e 75 (239)
T PF03740_consen 25 VEAARIAEEAGADGITVHLRE-----------------------------DRRHIQDRDVRRLRELVKTPLNLEMAPTEE 75 (239)
T ss_dssp HHHHHHHHHTT-SEEEEEB-T-----------------------------T-SSS-HHHHHHHHHH-SSEEEEEEESSHH
T ss_pred HHHHHHHHHcCCCEEEeccCC-----------------------------CcCcCCHHHHHHHHHHcccCEEeccCCCHH
Confidence 467778899999999998732 222 2 467999999889999888889999
Q ss_pred HHHHHHHcCCCEEEEecCCCCC--CCCc---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIAVQAGAAGIIVSNHGARQ--LDYV---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~--~~~~---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+.+.-.|.+++-.-..-+ -++| ....+.|.++.+.++ -++.++.+-. .+++..|..+|||.|=+-
T Consensus 76 ~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~---~~qi~~A~~~Gad~VELh 152 (239)
T PF03740_consen 76 MVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD---PEQIEAAKELGADRVELH 152 (239)
T ss_dssp HHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC---HHHHHHHHHcCCCEEEEe
Confidence 9999999999999986321111 1111 112345555554442 2577888875 788888999999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+--+.
T Consensus 153 TG~yA 157 (239)
T PF03740_consen 153 TGPYA 157 (239)
T ss_dssp THHHH
T ss_pred hhHhh
Confidence 96654
No 387
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.56 E-value=0.1 Score=49.66 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=60.0
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka----l~~GA~~V~ig~~~l 292 (349)
++.+.+.|+|+|.+.++.|-...-.. --.+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 45677899999999665442111111 1235566666777778999987774 66666643 347999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+. ..++++.+++..+.+.
T Consensus 113 ~~---~~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TE---APQEGLAAHVEAVCKS 130 (303)
T ss_pred CC---CCHHHHHHHHHHHHHh
Confidence 63 2356666666665554
No 388
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=95.53 E-value=0.15 Score=47.56 Aligned_cols=86 Identities=28% Similarity=0.322 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCcEEEE---EecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHH--hcCCCcEEEecCC
Q 018919 194 EDVKWLQTITKLPILVK---GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGGV 268 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK---~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~--~~~~ipvia~GGI 268 (349)
+.++++|+.. |...| .+.+.+++++|+++|+|.|.+.|- +.+.+.++.+. ..+++-+=++|||
T Consensus 176 ~Av~~aR~~~--~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGgI 243 (280)
T COG0157 176 EAVRRARAAA--PFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGGI 243 (280)
T ss_pred HHHHHHHHhC--CCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCCC
Confidence 3477877764 33223 368999999999999999999874 23555566655 4457888899998
Q ss_pred CCHHHHHHHHHhCCCEEEEchHHH
Q 018919 269 RRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 269 ~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
. .+.+..+...|.|.+.+|.+..
T Consensus 244 t-~~ni~~yA~tGVD~IS~galth 266 (280)
T COG0157 244 T-LENIREYAETGVDVISVGALTH 266 (280)
T ss_pred C-HHHHHHHhhcCCCEEEeCcccc
Confidence 6 4888888889999999997653
No 389
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.53 E-value=1.8 Score=41.77 Aligned_cols=233 Identities=15% Similarity=0.121 Sum_probs=118.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCCCCHHHHHhhC-CC-ceEE----------EEee--cCChhH
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVASTG-PG-IRFF----------QLYV--YKDRNV 137 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~~~~e~i~~~~-~~-~~~~----------Ql~~--~~~~~~ 137 (349)
|++||=+|..--.+-+.-..|.++|+++|+..+ +-+ ...+++.... +. .++. .+|. .-+.+.
T Consensus 1 ~~iIAEig~NH~Gdl~~A~~lI~~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 77 (329)
T TIGR03569 1 TFIIAEAGVNHNGSLELAKKLVDAAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEED 77 (329)
T ss_pred CEEEEEeCCCccCcHHHHHHHHHHHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHH
Confidence 677888765321111222478889999998755 322 2344432211 11 1111 1111 012344
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCC-cCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-cCH
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV-LTA 215 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v-~~~ 215 (349)
...+.+.+++.|...+.--.| .+.-|+-..+.+|- ++... +-..+..|+.+.+ ++.||+++.- .+.
T Consensus 78 ~~~L~~~~~~~Gi~~~stpfd-----~~svd~l~~~~v~~~KIaS~------~~~n~pLL~~~A~-~gkPvilStGmatl 145 (329)
T TIGR03569 78 HRELKEYCESKGIEFLSTPFD-----LESADFLEDLGVPRFKIPSG------EITNAPLLKKIAR-FGKPVILSTGMATL 145 (329)
T ss_pred HHHHHHHHHHhCCcEEEEeCC-----HHHHHHHHhcCCCEEEECcc------cccCHHHHHHHHh-cCCcEEEECCCCCH
Confidence 556667777888887642222 12223333332221 11111 1112677888876 6999999875 456
Q ss_pred HHHHH----HHHcCCC---EEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARI----AVQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~----a~~~G~d---~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
++... +.+.|.+ .+.+..............+..+..+++.. ++||..++=-..-.=.+.|.++||+ +|=
T Consensus 146 ~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~SdHt~G~~~~~aAvalGA~--iIE 221 (329)
T TIGR03569 146 EEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGYSDHTLGIEAPIAAVALGAT--VIE 221 (329)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEECCCCccHHHHHHHHHcCCC--EEE
Confidence 55433 4457875 44443221111111123466777777666 5899886532222333457789999 556
Q ss_pred hHHHHHHhhcCHHHH----HHHHHHHHHHHHHHHHHcCCC
Q 018919 289 RPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 324 (349)
Q Consensus 289 ~~~l~~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~~ 324 (349)
+-|--.-+..|.+.- -+-+..+.++++..-..+|..
T Consensus 222 kH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 222 KHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred eCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 655432233343221 123566777777777777753
No 390
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=95.52 E-value=0.045 Score=47.74 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=54.9
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI 202 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~ 202 (349)
+..-+|=+.--|.......++.+++.+.|++++ + |. + .-+.++++++.
T Consensus 91 gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEi-l------------------Pg-~------------~p~vi~~i~~~ 138 (175)
T PF04309_consen 91 GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEI-L------------------PG-V------------MPKVIKKIREE 138 (175)
T ss_dssp T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEE-E------------------SC-C------------HHHHHCCCCCC
T ss_pred CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEE-c------------------hH-H------------HHHHHHHHHHh
Confidence 444444333367777778888889999999987 2 10 0 02568888888
Q ss_pred cCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 203 TKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 203 ~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++.|++..| +.+.|++..++++||++|..|+
T Consensus 139 ~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 139 TNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp CSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred cCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 999999988 4789999999999999998875
No 391
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.45 E-value=0.13 Score=48.10 Aligned_cols=92 Identities=21% Similarity=0.387 Sum_probs=60.6
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-...-. ....+.+..+++.+++++||++.-|-.+-.+.++ +-.+|||+|++..|++
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 4567788999999976644221111 1224556666666666899988777767666664 3347999999999988
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. ..++++.+++..+.+
T Consensus 104 ~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 64 245565555555544
No 392
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.44 E-value=0.094 Score=48.34 Aligned_cols=71 Identities=23% Similarity=0.256 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
+.|+...+.||++|.|-..+.. + + .+++.+..+++.+ ++||+.-..|-++.++.++..+|||+|.+=-.++
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~~-F-~--Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQSY-F-G--GSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCCc-C-C--CCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 6688899999999988543221 1 1 2467777787776 7999999999999999999999999997665444
No 393
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.44 E-value=0.12 Score=48.81 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=59.6
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-...-. ..-.+.+..+++.+.+++|||+.-|- +-.+.++ +-++|||++++-.|++
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 4567789999999976544211111 12234555666666678999998775 6677665 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. ..++++.++++.+.+
T Consensus 106 ~~---~~~~~i~~~f~~v~~ 122 (289)
T cd00951 106 TE---APQEGLYAHVEAVCK 122 (289)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 53 245666666555544
No 394
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.43 E-value=0.084 Score=53.40 Aligned_cols=229 Identities=16% Similarity=0.204 Sum_probs=131.4
Q ss_pred hhcccccccccccC-CC-CCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l~-~~-~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|.... .. +++|++|.+ ..+++.||+.|||..++ |..||.+.++.|..+++.. ++++++..
T Consensus 12 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qa 82 (475)
T TIGR01303 12 LTYNDVFMVPSRSEVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVK 82 (475)
T ss_pred CCccceEEccCccCccCCCceeecccc-cCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 47999999998663 33 488999884 47899999999997654 8899999999999999864 45676654
Q ss_pred hhCC----Cce----EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCC-chhHHhhhhcC-CCC-cCcccccCCC
Q 018919 119 STGP----GIR----FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFT-LPP-FLTLKNFQGL 187 (349)
Q Consensus 119 ~~~~----~~~----~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g-~r~~d~~~~~~-~p~-~~~~~~~~~~ 187 (349)
+... ... .+.+. ......+.++.+.+.+...+.+.-+.-..| ...+|++..-. .+- .+-..... .
T Consensus 83 e~v~~VKv~eim~~~pvtv~---p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~li-t 158 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTPITLA---PHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLV-T 158 (475)
T ss_pred HHHhhcchhhccccCCeEEC---CCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCce-E
Confidence 3211 111 11111 112344566666666665554421100001 11233321000 000 00000000 0
Q ss_pred CCCch--HHHHHHHHHh-c-CCcEEE-----------------------------------EEe--cCHHHHHHHHHcCC
Q 018919 188 DLGKM--DEDVKWLQTI-T-KLPILV-----------------------------------KGV--LTAEDARIAVQAGA 226 (349)
Q Consensus 188 ~~~~~--~~~i~~i~~~-~-~~pv~v-----------------------------------K~v--~~~~~a~~a~~~G~ 226 (349)
.+++. .+.++.+.+. . .+||+= +++ ...+-++.+.++|+
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGV 238 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGV 238 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCC
Confidence 11111 1222222221 0 123321 011 11356788999999
Q ss_pred CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 227 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 227 d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
|.|++..+-|+. ....+.+.++++.. .++|||+ |-+.|.+++..++.+|||+|-||
T Consensus 239 d~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 239 DVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 999997643432 34567788887765 3699998 66999999999999999999865
No 395
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.33 Score=43.86 Aligned_cols=118 Identities=17% Similarity=0.274 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~ 211 (349)
+.+.+.+-++.++++|++++++..-.+ |... .+.++++.+.. ++++..--
T Consensus 71 E~~iM~~DI~~~~~lG~~GVV~G~lt~----------------------------dg~iD~~~le~Li~aA~gL~vTFHr 122 (241)
T COG3142 71 ELEIMLEDIRLARELGVQGVVLGALTA----------------------------DGNIDMPRLEKLIEAAGGLGVTFHR 122 (241)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEeeecC----------------------------CCccCHHHHHHHHHHccCCceeeeh
Confidence 345677888999999999998755332 1122 35566666554 66776554
Q ss_pred e----cCHH-HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHhCCCE
Q 018919 212 V----LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA-LALGASG 284 (349)
Q Consensus 212 v----~~~~-~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka-l~~GA~~ 284 (349)
. .++. ..+.+.+.|+.-|-. +||. ....-.++.|.++.+..++++.|++.|||+. +.+... ...|+.-
T Consensus 123 AFD~~~d~~~ale~li~~Gv~RILT--sGg~--~sa~eg~~~l~~li~~a~gri~Im~GaGV~~-~N~~~l~~~tg~~e 196 (241)
T COG3142 123 AFDECPDPLEALEQLIELGVERILT--SGGK--ASALEGLDLLKRLIEQAKGRIIIMAGAGVRA-ENIAELVLLTGVTE 196 (241)
T ss_pred hhhhcCCHHHHHHHHHHCCCcEEec--CCCc--CchhhhHHHHHHHHHHhcCCEEEEeCCCCCH-HHHHHHHHhcCchh
Confidence 2 4554 457899999999976 4443 2223345556666666667899999999876 566555 4467643
No 396
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.36 E-value=2.5 Score=39.71 Aligned_cols=180 Identities=18% Similarity=0.097 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCeEEecCCCC------------CCHHHHHhh-------CCCceEEEEe-ecCChhHHHHHHHHHHHcCC
Q 018919 91 YATARAASAAGTIMTLSSWST------------SSVEEVAST-------GPGIRFFQLY-VYKDRNVVAQLVRRAERAGF 150 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~------------~~~e~i~~~-------~~~~~~~Ql~-~~~~~~~~~~~~~~~~~~G~ 150 (349)
..-|+.+++.|.-.+..+... .+++++... ..-|..+-+- +..++.-..+.++.++++|+
T Consensus 28 ~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~ 107 (289)
T COG2513 28 AGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGA 107 (289)
T ss_pred HHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCc
Confidence 367889999998866543311 234444321 1122333321 11235566788889999998
Q ss_pred CEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEEEEec----------CHHHH
Q 018919 151 KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILVKGVL----------TAEDA 218 (349)
Q Consensus 151 ~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~vK~v~----------~~~~a 218 (349)
.++.|- |.-. |++-+-.....+.+.+. .+.|+.+++.. +.++++--.. ..+-+
T Consensus 108 agi~iE-Dq~~--------------pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra 172 (289)
T COG2513 108 AGIHIE-DQVG--------------PKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERA 172 (289)
T ss_pred ceeeee-eccc--------------chhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHH
Confidence 886541 2211 11101111111333333 55666666665 3444432221 12446
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcE--EEecCCCCHHHHHHHHHhCCCEEEEchHHHHHH
Q 018919 219 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 295 (349)
Q Consensus 219 ~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~ 295 (349)
+...++|||+|.. -+..+.+.+.+++++++-.+|+ .-.|+ .-.-++.+.-++|.+.|..|-..+++.
T Consensus 173 ~AY~eAGAD~if~---------~al~~~e~i~~f~~av~~pl~~N~t~~g~-tp~~~~~~L~~~Gv~~V~~~~~~~raa 241 (289)
T COG2513 173 QAYVEAGADAIFP---------EALTDLEEIRAFAEAVPVPLPANITEFGK-TPLLTVAELAELGVKRVSYGLTAFRAA 241 (289)
T ss_pred HHHHHcCCcEEcc---------ccCCCHHHHHHHHHhcCCCeeeEeeccCC-CCCcCHHHHHhcCceEEEECcHHHHHH
Confidence 7789999999976 2234577888888887412222 22233 112233344469999999998776653
No 397
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=95.34 E-value=0.15 Score=48.61 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=62.4
Q ss_pred HHHHHHHHhcC--CcEEEEEecCHH----HHHHHHHc---CCCEEEEecCCCCCCCCchhhHHHHHHHHHHh---c-CCC
Q 018919 194 EDVKWLQTITK--LPILVKGVLTAE----DARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 260 (349)
Q Consensus 194 ~~i~~i~~~~~--~pv~vK~v~~~~----~a~~a~~~---G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i 260 (349)
+.++.+++..+ .|+++ .+.+.+ +|..+.++ ++|.|.+.|.+++ .+. ..+.+.++++++ + .++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~--~G~--~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR--RGV--FRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC--CCC--HHHHHHHHHHHHHhCCCCCe
Confidence 34777777664 46655 444444 56666666 4899999886432 111 223344444443 2 468
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 261 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 261 pvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
.|+++||| +.+.+.++...|+|.+.+|+...
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 89999999 78999888889999999999765
No 398
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.34 E-value=0.13 Score=48.82 Aligned_cols=100 Identities=28% Similarity=0.322 Sum_probs=60.8
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc-CCCCCCc---h-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF-QGLDLGK---M-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~-~~~~~~~---~-~~~i~ 197 (349)
.+.++.+- .+.+...+.++.++++|+++|.++-... +... +.+.. .|. .... .++..+. . ++.++
T Consensus 158 ~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~--~~~~-~~~~~--~~~---~~~~~gg~sg~~~~~~~l~~v~ 227 (300)
T TIGR01037 158 VPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLR--GMKI-DIKTG--KPI---LANKTGGLSGPAIKPIALRMVY 227 (300)
T ss_pred CCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCC--cccc-ccccC--cee---eCCCCccccchhhhHHHHHHHH
Confidence 45566653 2445567888899999999998752211 1100 00000 000 0000 0111111 2 46788
Q ss_pred HHHHhcCCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++..++||+ ..++.++++|.+++++|||+|.+.
T Consensus 228 ~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 228 DVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 89988899987 456789999999999999999883
No 399
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.30 E-value=0.7 Score=42.49 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE--E
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV--K 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v--K 210 (349)
.+.+.+.+.++.+++. ++++++++.||.+-..-..++.... +. ....+++.++++|+.+++|+++ |
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~-------~a----~~~g~~~~v~~vr~~~~~Pl~lM~y 82 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHR-------KV----KGLDIWPLLEEVRKDVSVPIILMTY 82 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHH-------HH----HHcCcHHHHHHHhccCCCCEEEEEe
Confidence 4667788889888888 9999999988653100000000000 00 0000136899999888999853 3
Q ss_pred E---ecCHHH-HHHHHHcCCCEEEEe
Q 018919 211 G---VLTAED-ARIAVQAGAAGIIVS 232 (349)
Q Consensus 211 ~---v~~~~~-a~~a~~~G~d~I~v~ 232 (349)
. +.+++. ++.+.++|+|+|++.
T Consensus 83 ~n~~~~~~~~~i~~~~~~Gadgvii~ 108 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGADGVLFP 108 (244)
T ss_pred cchhhhCHHHHHHHHHHcCCCEEEEC
Confidence 2 234544 888999999999994
No 400
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=95.27 E-value=0.2 Score=46.59 Aligned_cols=40 Identities=38% Similarity=0.499 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++.+|+.+++||.+.. +.++++++.+. .|+|+++|..
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 4679999999999999975 68999999998 9999999953
No 401
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=95.24 E-value=3.2 Score=40.25 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=77.2
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 271 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~------------- 271 (349)
.+|++|+.-. +.|+|.+-++. ||-......| -.++.|.+|.+.+ .++|++.=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 4678887755 58999998874 5543211012 3578899998877 25999998886655
Q ss_pred ---------HHHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018919 272 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 325 (349)
Q Consensus 272 ---------~dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 325 (349)
+++.+|+.+|..-|=++|-+..+... .. ..-.....+.+++..+..|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976543211 11 12234445667777888888888653
No 402
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.21 E-value=3.2 Score=40.19 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=76.5
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCC--------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRR-------------- 270 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~-------------- 270 (349)
.+|++|+.-. +.|+|.+-++. ||-......| -.++.|.+|++.++ ++|++.=||=..
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887765 58999998874 5543211112 35788999988873 588888777544
Q ss_pred --------HHHHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018919 271 --------GTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 325 (349)
Q Consensus 271 --------~~dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 325 (349)
.+++.|++.+|..-|=++|.+..+... .. ..-.....+.+++.++..|..+|..+
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 377899999999999999977554321 00 12233445667778888888888653
No 403
>PRK05269 transaldolase B; Provisional
Probab=95.19 E-value=1.8 Score=41.45 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhc---
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ--- 257 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~--- 257 (349)
+.++.+.+. ++++-+-.+.+.+.+..|.++|++.|... =||-.+ .+.+.+..+.++.+..+
T Consensus 141 ~A~~~L~~~-GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~ 217 (318)
T PRK05269 141 RAAEQLEKE-GINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHG 217 (318)
T ss_pred HHHHHHHHc-CCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcC
Confidence 445666554 89998888999999999999999988764 122111 13345556666665542
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 296 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~ 296 (349)
.+..|++. .+|+..++.+ ..|+|.|-|.-.++..+.
T Consensus 218 ~~t~im~A-Sfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 218 YKTVVMGA-SFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred CCceEEee-ccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 24556664 6999999986 679999999988887765
No 404
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=95.18 E-value=0.31 Score=47.26 Aligned_cols=122 Identities=17% Similarity=0.161 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILVK 210 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~vK 210 (349)
+++...+.++++.+.|++.+-+.++..... . ...+. .+.++.+|+.. +.++.+.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-~----------------------~~~~~d~~~v~~ir~~~g~~~~l~vD 195 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-G----------------------EDLREDLARVRAVREAVGPDVDLMVD 195 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-h----------------------HHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 466677788888889999999887542100 0 00122 56789999887 4677775
Q ss_pred Ee--cCHHHHHH----HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-CC
Q 018919 211 GV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 283 (349)
Q Consensus 211 ~v--~~~~~a~~----a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A~ 283 (349)
.- .+.++|.. +.+.|++.|-= ...+..++.+.++++.. ++||+++..+.+..|+.+++..| +|
T Consensus 196 aN~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~ipi~~dE~~~~~~~~~~~i~~~~~d 265 (357)
T cd03316 196 ANGRWDLAEAIRLARALEEYDLFWFEE--------PVPPDDLEGLARLRQAT--SVPIAAGENLYTRWEFRDLLEAGAVD 265 (357)
T ss_pred CCCCCCHHHHHHHHHHhCccCCCeEcC--------CCCccCHHHHHHHHHhC--CCCEEeccccccHHHHHHHHHhCCCC
Confidence 42 35566544 33445544310 01122466777777765 79999999999999999999865 78
Q ss_pred EEEEc
Q 018919 284 GIFIG 288 (349)
Q Consensus 284 ~V~ig 288 (349)
.|++-
T Consensus 266 ~v~~k 270 (357)
T cd03316 266 IIQPD 270 (357)
T ss_pred EEecC
Confidence 88764
No 405
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.17 E-value=0.18 Score=47.96 Aligned_cols=93 Identities=25% Similarity=0.394 Sum_probs=59.1
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+++.|+|+|++-++.|-...-. .-..+.+..+++.+++++|||+.-|=.+-+++++ |-.+|||++++-.|++
T Consensus 31 v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4567889999999976544211111 1123455666667777899998666665566553 3448999999999998
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+.. .++++.+.+..+.+.
T Consensus 111 ~k~---~~~gl~~hf~~ia~a 128 (299)
T COG0329 111 NKP---SQEGLYAHFKAIAEA 128 (299)
T ss_pred cCC---ChHHHHHHHHHHHHh
Confidence 742 345554444444433
No 406
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.16 E-value=0.89 Score=42.20 Aligned_cols=139 Identities=26% Similarity=0.321 Sum_probs=0.0
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCeEEecCCC------------CCCHHH-------HHhhCCCc-eEEEE----e
Q 018919 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS------------TSSVEE-------VASTGPGI-RFFQL----Y 130 (349)
Q Consensus 75 ~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~------------~~~~e~-------i~~~~~~~-~~~Ql----~ 130 (349)
++.|..+ +...|+.+.++|+..+++..+ ..++++ +.+..+.+ ...-+ |
T Consensus 14 l~~~~ay--------D~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y 85 (254)
T cd06557 14 IVMLTAY--------DYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSY 85 (254)
T ss_pred EEEEeCC--------CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcc
Q ss_pred ecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEE
Q 018919 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILV 209 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~v 209 (349)
.....+......+.++++|+.++-| -|... .+.|+.+++. ++||+.
T Consensus 86 ~~~~~~av~~a~r~~~~aGa~aVki--------------------------------Ed~~~~~~~I~al~~a-gipV~g 132 (254)
T cd06557 86 QTSPEQALRNAARLMKEAGADAVKL--------------------------------EGGAEVAETIRALVDA-GIPVMG 132 (254)
T ss_pred cCCHHHHHHHHHHHHHHhCCeEEEE--------------------------------cCcHHHHHHHHHHHHc-CCCeec
Q ss_pred EEecCH-----------------------HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 210 KGVLTA-----------------------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 210 K~v~~~-----------------------~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
-.-.++ ++++...++|||.|.+ -++++ +...++.+.+ ++|+|+-|
T Consensus 133 HiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~l---------E~v~~-~~~~~i~~~v--~iP~igiG 200 (254)
T cd06557 133 HIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVL---------ECVPA-ELAKEITEAL--SIPTIGIG 200 (254)
T ss_pred cccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEE---------cCCCH-HHHHHHHHhC--CCCEEEec
No 407
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.15 E-value=1.2 Score=40.85 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=85.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~v 212 (349)
+.+...+.++.+.++|++.|+++...+... .|. -.+.++.++.+++.. +.++.+ .+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~-----------~p~-----------~~~~~~~i~~l~~~~~~~~~~~-l~ 73 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKA-----------VPQ-----------MEDDWEVLRAIRKLVPNVKLQA-LV 73 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccc-----------ccc-----------CCCHHHHHHHHHhccCCcEEEE-Ec
Confidence 556677888999999999999765443110 010 122277889988875 455543 33
Q ss_pred cC-HHHHHHHHHcCCCEEEEecCCCC-----CCCCch-hhHHHHHHHHHHhc-CCCcEEEec-CC----CCHHHHH----
Q 018919 213 LT-AEDARIAVQAGAAGIIVSNHGAR-----QLDYVP-ATIMALEEVVKATQ-GRIPVFLDG-GV----RRGTDVF---- 275 (349)
Q Consensus 213 ~~-~~~a~~a~~~G~d~I~v~~~gg~-----~~~~~~-~~~~~l~~i~~~~~-~~ipvia~G-GI----~~~~dv~---- 275 (349)
.+ .++++.+.++|++.|.++..+-. .+..+. ..++.+.+..+..+ ..+++..+- .+ .+.+++.
T Consensus 74 ~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~ 153 (265)
T cd03174 74 RNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAK 153 (265)
T ss_pred cCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHH
Confidence 34 88999999999999998754320 001111 12222222222221 134444333 23 3444433
Q ss_pred HHHHhCCCEEEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 276 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 276 kal~~GA~~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
++.++|++.+.+.-..- ..-++.+.++++.+++.+
T Consensus 154 ~~~~~g~~~i~l~Dt~G----~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 154 ALEEAGADEISLKDTVG----LATPEEVAELVKALREAL 188 (265)
T ss_pred HHHHcCCCEEEechhcC----CcCHHHHHHHHHHHHHhC
Confidence 34558999998875421 112455555555555543
No 408
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=95.11 E-value=2.3 Score=40.72 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhc---
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQ--- 257 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~--- 257 (349)
+.++.+.+. ++++-+-.+.+.+.+..|.++|++.|...- ||-.| ...+....+.++.+..+
T Consensus 139 ~A~~~L~~~-GI~vN~TliFS~~Qa~aaa~AGa~~ISPFV--gRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g 215 (317)
T TIGR00874 139 RAAEELEKE-GIHCNLTLLFSFVQAIACAEAKVTLISPFV--GRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHG 215 (317)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEeec--chHhHhhhhccCccccccccCchHHHHHHHHHHHHHcC
Confidence 445666554 899988889999999999999999887641 22111 11334556666665542
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 258 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 258 ~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
.+. .|....+|+..++.+ .+|||.+-|.-.++..+..
T Consensus 216 ~~T-~Im~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~~ 252 (317)
T TIGR00874 216 YPT-EVMGASFRNKEEILA--LAGCDRLTISPALLDELKE 252 (317)
T ss_pred CCc-EEEeeccCCHHHHHH--HHCCCeEeCCHHHHHHHHh
Confidence 234 444566999999986 5799999999888876643
No 409
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.09 E-value=0.15 Score=49.06 Aligned_cols=99 Identities=24% Similarity=0.254 Sum_probs=63.3
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-cCCCCCC---ch-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-FQGLDLG---KM-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-~~~~~~~---~~-~~~i~ 197 (349)
.+.++.+-...+.+...+.++.++++|+++|.++-..... .. ..-|. ... ..++..+ .. ++.++
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~~------~~~~~---~~~~~gG~sG~~~~~~~l~~v~ 271 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--PG------LLRSP---LANETGGLSGAPLKERSTEVLR 271 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--cc------ccccc---ccCCCCccCChhhhHHHHHHHH
Confidence 4677877543344466788899999999999875432110 00 00000 000 0011111 12 78899
Q ss_pred HHHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.. ++||+ +.++.+.+++.+.+.+|||.|.+.
T Consensus 272 ~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 272 ELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 999988 78976 566889999999999999999884
No 410
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.06 E-value=1.8 Score=39.84 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=80.9
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHh-------hCC-CceEEEE-ee-cCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAS-------TGP-GIRFFQL-YV-YKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~-------~~~-~~~~~Ql-~~-~~~~~~~~~~~~~~~~ 147 (349)
+...|+.+.++|+..+..+.+ ..+++|+.. ..+ .+...-+ ++ ..+++...+.++++.+
T Consensus 21 D~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~ 100 (240)
T cd06556 21 DYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMR 100 (240)
T ss_pred CHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 457999999999887753321 134555432 222 1333322 11 1244566677888888
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecC-------------
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT------------- 214 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~------------- 214 (349)
+|+.++-|- |. .+..+.|+.+++. .+||+...=.+
T Consensus 101 aGa~gv~iE-D~------------------------------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~ 148 (240)
T cd06556 101 AGAAGVKIE-GG------------------------------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQ 148 (240)
T ss_pred cCCcEEEEc-Cc------------------------------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceee
Confidence 888876541 11 0113456666654 57776554221
Q ss_pred ----------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecC
Q 018919 215 ----------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 267 (349)
Q Consensus 215 ----------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 267 (349)
.+.++...++|||.|.+- ++ +.+.+.++.+.+ ++|+++.|.
T Consensus 149 ~~~~~~~~~ai~Ra~ay~~AGAd~i~~e---------~~-~~e~~~~i~~~~--~~P~~~~ga 199 (240)
T cd06556 149 YRGDEAGEQLIADALAYAPAGADLIVME---------CV-PVELAKQITEAL--AIPLAGIGA 199 (240)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCEEEEc---------CC-CHHHHHHHHHhC--CCCEEEEec
Confidence 244777889999999983 22 567778888877 789987653
No 411
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.05 E-value=3 Score=38.97 Aligned_cols=97 Identities=23% Similarity=0.299 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCcEEEEEec--CHHHH----HHHHHcCCCEEEEecCCCCCCCC-ch--hhHHHHHHHHHHhcCCCcEE
Q 018919 193 DEDVKWLQTITKLPILVKGVL--TAEDA----RIAVQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPVF 263 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~--~~~~a----~~a~~~G~d~I~v~~~gg~~~~~-~~--~~~~~l~~i~~~~~~~ipvi 263 (349)
.+.++++. .++.||++|.-. +.++. +.+...|-.-+.+--.|++.... .. ..+..+..+++.. ..||+
T Consensus 124 ~~LL~~~a-~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~ 200 (266)
T PRK13398 124 FELLKEVG-KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII 200 (266)
T ss_pred HHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence 45677774 579999999862 56654 34455787666665455543321 11 2345555555544 68999
Q ss_pred EecCCCC------HHHHHHHHHhCCCEEEEchHHH
Q 018919 264 LDGGVRR------GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 264 a~GGI~~------~~dv~kal~~GA~~V~ig~~~l 292 (349)
.|..=.. ...+..|+++||++++|-+-+-
T Consensus 201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 9644333 4667788999999999998653
No 412
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.05 E-value=0.2 Score=47.34 Aligned_cols=93 Identities=11% Similarity=0.133 Sum_probs=58.0
Q ss_pred HHHHHHHcC-CCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchH
Q 018919 217 DARIAVQAG-AAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRP 290 (349)
Q Consensus 217 ~a~~a~~~G-~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~ 290 (349)
.++.+.+.| +++|.+.++.|-...-.. ...+.+..+++.+++++||++.=|=.+-.|+++ +-.+|||+|++..|
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P 105 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 105 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 345678899 999999766442111111 123445556666667899987755445565554 34489999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHH
Q 018919 291 VVYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 291 ~l~~~~~~G~~gv~~~l~~l~~ 312 (349)
+++.. .++++.++++.+.+
T Consensus 106 ~y~~~---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 106 FYYKF---SFPEIKHYYDTIIA 124 (290)
T ss_pred cCCCC---CHHHHHHHHHHHHh
Confidence 87642 34555555555543
No 413
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.04 E-value=0.12 Score=52.60 Aligned_cols=234 Identities=17% Similarity=0.224 Sum_probs=129.5
Q ss_pred hhccccccccccc-CCCCCCCcceeEc-CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l-~~~~~~d~s~~l~-g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|... ...+++|++|.+. +..+..||+.|||...+ +..|+.+.++.|..++++. .+++++..
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~ 80 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQA 80 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHH
Confidence 4699999999865 3456889998875 46778899999998754 6689999999998888863 34555432
Q ss_pred h----hCC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCC-CCC-chhHHhhhh----------cC------
Q 018919 119 S----TGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNR----------FT------ 174 (349)
Q Consensus 119 ~----~~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p-~~g-~r~~d~~~~----------~~------ 174 (349)
+ ... ....-+...-.......+.++.+.+.+...+.|.=+.- ..| ...+|+... +.
T Consensus 81 ~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v~ 160 (486)
T PRK05567 81 EEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLVT 160 (486)
T ss_pred HHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCEE
Confidence 2 111 11101111111122344566666677776665421100 000 011222110 00
Q ss_pred CCCcCccccc------CC-----CCCC--c----h-HHH-HHHHHHh-----cCCcEEEEEec-----CHHHHHHHHHcC
Q 018919 175 LPPFLTLKNF------QG-----LDLG--K----M-DED-VKWLQTI-----TKLPILVKGVL-----TAEDARIAVQAG 225 (349)
Q Consensus 175 ~p~~~~~~~~------~~-----~~~~--~----~-~~~-i~~i~~~-----~~~pv~vK~v~-----~~~~a~~a~~~G 225 (349)
++...+.... .+ ..|. . . .++ ++.+... ....+.+.... +.+.++.+.++|
T Consensus 161 v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~ag 240 (486)
T PRK05567 161 VPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAG 240 (486)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhC
Confidence 0000000000 00 0000 0 0 112 2221100 01234444432 247789999999
Q ss_pred CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 226 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 226 ~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+|.|++...-|+. ...++.+.++++.. .++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 241 vdvivvD~a~g~~----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 241 VDVLVVDTAHGHS----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred CCEEEEECCCCcc----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 9999886422211 22456677776654 2688887 99999999999999999999875
No 414
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.03 E-value=0.8 Score=44.47 Aligned_cols=148 Identities=21% Similarity=0.284 Sum_probs=0.0
Q ss_pred cccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEe
Q 018919 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (349)
Q Consensus 77 Apm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~ 156 (349)
+|-++.++. .++-.-+.+++.+.|++++..-+....++.+.+..+ ++|+-...-..
T Consensus 142 sp~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~d---~lqIga~~~~n-------------------- 197 (352)
T PRK13396 142 SPYAFQGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEVAD---VIQVGARNMQN-------------------- 197 (352)
T ss_pred CCcccCCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhCC---eEEECcccccC--------------------
Q ss_pred cCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cCHHH----HHHHHHcCCCEEE
Q 018919 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGII 230 (349)
Q Consensus 157 ~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~~~~----a~~a~~~G~d~I~ 230 (349)
.+.++++.+ ++.||++|.- .+.++ ++...+.|-+-|+
T Consensus 198 ------------------------------------~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~vi 240 (352)
T PRK13396 198 ------------------------------------FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVI 240 (352)
T ss_pred ------------------------------------HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEE
Q ss_pred EecCCCCCCCCchh----hHHHHHHHHHHhcCCCcEEEe-----c-CCCCHHHHHHHHHhCCCEEEE
Q 018919 231 VSNHGARQLDYVPA----TIMALEEVVKATQGRIPVFLD-----G-GVRRGTDVFKALALGASGIFI 287 (349)
Q Consensus 231 v~~~gg~~~~~~~~----~~~~l~~i~~~~~~~ipvia~-----G-GI~~~~dv~kal~~GA~~V~i 287 (349)
+--.|-|.+..+.+ .+..++.+++.. ++|||+| | -=..+.-...|+++|||+++|
T Consensus 241 L~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliI 305 (352)
T PRK13396 241 LCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMI 305 (352)
T ss_pred EEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEE
No 415
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.00 E-value=1.1 Score=40.00 Aligned_cols=124 Identities=18% Similarity=0.076 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEE--E
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPIL--V 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~--v 209 (349)
.|.....+.++++.+.|++.+.+.+--.. + .| +..+ .+.++++++.++.|+- +
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~~-----------~-~~------------~~~~~~~~~~~i~~~~~~~~~v~l 68 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDGH-----------F-VP------------NLTIGPPVVEAIRKVTKLPLDVHL 68 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccCC-----------c-CC------------CcCcCHHHHHHHHhcCCCcEEEEe
Confidence 46667788999999999999887531100 0 01 1113 5778888876654542 3
Q ss_pred EEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 210 KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 210 K~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+.-...+....+.++|+|+|.+ |++.. ......+..+++ . ++.+..+=+-.+..+..+.+..++|.+.+++
T Consensus 69 ~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 69 MVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS-A--GIKAGLVLNPATPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred eeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH-c--CCEEEEEECCCCCHHHHHHHHhhCCEEEEEE
Confidence 2222334677788999999999 54410 111223333322 2 4444444355677788888887899988875
No 416
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.99 E-value=0.19 Score=47.62 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=58.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+|+|.+.++.|-...-.. .-.+.+..+++.+++++||++.=|- +-.++++ +-.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 45678899999999765442111111 1234455566666678999987663 5556554 3348999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~e 313 (349)
+. ..++++.++++.+.+.
T Consensus 111 ~~---~s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 IN---GEQEGLYAHVEAVCES 128 (296)
T ss_pred CC---CCHHHHHHHHHHHHhc
Confidence 63 2356666666555543
No 417
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=94.94 E-value=3.9 Score=39.68 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=76.5
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCCCch----hhHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 271 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~------------- 271 (349)
.+|++|+.-. +.|+|.+-++. ||-+.....| -.++.|.+|.+.++ ++|++.=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887766 58999998874 5543211012 25788999988872 5999988886655
Q ss_pred ---------HHHHHHHHhCCCEEEEchHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018919 272 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 325 (349)
Q Consensus 272 ---------~dv~kal~~GA~~V~ig~~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 325 (349)
+++.||+.+|..-|=++|-+..+... .. ..-.....+.+++-++..|..+|..+
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999966543221 00 12233445567777788888888654
No 418
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=94.91 E-value=1.3 Score=41.17 Aligned_cols=118 Identities=25% Similarity=0.265 Sum_probs=80.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc--CCcEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT--KLPILV 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~--~~pv~v 209 (349)
.+++...+.+++..+.|+..+-+.++. +++. .+.++.+|+.. +.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~G~~~~KiKvg~-----------------------------~~~~d~~~v~~vr~~~g~~~~l~v 134 (265)
T cd03315 84 GEPAEVAEEARRALEAGFRTFKLKVGR-----------------------------DPARDVAVVAALREAVGDDAELRV 134 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC-----------------------------CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 456666777788888899998877642 1112 46788888877 456655
Q ss_pred EEe--cCHHHH----HHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC-C
Q 018919 210 KGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 282 (349)
Q Consensus 210 K~v--~~~~~a----~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G-A 282 (349)
..- -+.++| +.+.+.|++.|--- ..+..++.+.++++.. .+||++++.+.+..|+.+++..+ +
T Consensus 135 Dan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~~~~ 204 (265)
T cd03315 135 DANRGWTPKQAIRALRALEDLGLDYVEQP--------LPADDLEGRAALARAT--DTPIMADESAFTPHDAFRELALGAA 204 (265)
T ss_pred eCCCCcCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHhCCC
Confidence 432 245554 55666777776321 1122466777777765 79999999999999999999865 7
Q ss_pred CEEEEch
Q 018919 283 SGIFIGR 289 (349)
Q Consensus 283 ~~V~ig~ 289 (349)
|.|++--
T Consensus 205 d~v~~k~ 211 (265)
T cd03315 205 DAVNIKT 211 (265)
T ss_pred CEEEEec
Confidence 8888753
No 419
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=94.89 E-value=0.6 Score=44.55 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC-Cc-eEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHH
Q 018919 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGP-GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (349)
Q Consensus 91 ~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~-~~-~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d 168 (349)
....+.+.+.|...+...... +.+-+..... +. .+.++ .+ .+.+++++++|+|.|.++---. |
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~-p~~~i~~lk~~g~~v~~~v---~s----~~~a~~a~~~GaD~Ivv~g~ea--g----- 141 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGN-PGKYIPRLKENGVKVIPVV---AS----VALAKRMEKAGADAVIAEGMES--G----- 141 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCC-cHHHHHHHHHcCCEEEEEc---CC----HHHHHHHHHcCCCEEEEECccc--C-----
Confidence 356677778898876543332 2222222211 22 23332 12 3457888899999998753210 0
Q ss_pred hhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 169 IKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++. .+...+..++++++.+++||++-+ +.+.+++..+...|+|+|.+..
T Consensus 142 ---Gh~-------------g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 142 ---GHI-------------GELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred ---CCC-------------CCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 000 011127889999998899987765 7899999999999999999853
No 420
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=94.88 E-value=0.31 Score=44.62 Aligned_cols=80 Identities=24% Similarity=0.111 Sum_probs=55.2
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHh
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTI 202 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~ 202 (349)
.+.++.+-...+ +.+.++++.++++|+++| |+++-.. + ....|+.|++++
T Consensus 140 ~pVsvKir~g~~-~~~~~la~~l~~aG~d~i--hv~~~~~---------------g----------~~ad~~~I~~i~-- 189 (233)
T cd02911 140 VPVSVKIRAGVD-VDDEELARLIEKAGADII--HVDAMDP---------------G----------NHADLKKIRDIS-- 189 (233)
T ss_pred CCEEEEEcCCcC-cCHHHHHHHHHHhCCCEE--EECcCCC---------------C----------CCCcHHHHHHhc--
Confidence 355665543333 456788889999999975 5543210 0 011177788877
Q ss_pred cCCcEEE-EEecCHHHHHHHHHcCCCEEEEe
Q 018919 203 TKLPILV-KGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 203 ~~~pv~v-K~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.++||+. .++.+.++++.+++.|+|+|.+.
T Consensus 190 ~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 190 TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 6899875 44789999999999999999884
No 421
>PRK12346 transaldolase A; Provisional
Probab=94.87 E-value=2 Score=41.12 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCC-------------CchhhHHHHHHHHHHhcC--
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKATQG-- 258 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~-------------~~~~~~~~l~~i~~~~~~-- 258 (349)
+.++.+.+. ++++-+-.+.+.+.+..|.++|++.|... =||-.+ .+.+....+.++.+..+.
T Consensus 140 ~A~~~L~~~-GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~ 216 (316)
T PRK12346 140 RAAEELEKE-GINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHR 216 (316)
T ss_pred HHHHHHHHC-CCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcC
Confidence 445555543 89998888999999999999999988753 222111 133445566666655421
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHHHHhh
Q 018919 259 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 297 (349)
Q Consensus 259 ~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~~~~~ 297 (349)
--+.|....+|+..++. ..+|+|.+-|.-.++..+..
T Consensus 217 ~~T~Vm~ASfRn~~qi~--alaG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 217 YETIVMGASFRRTEQIL--ALAGCDRLTISPNLLKELQE 253 (316)
T ss_pred CCcEEEecccCCHHHHH--HHhCCCEEeCCHHHHHHHHh
Confidence 12444455599999997 34799999999888877643
No 422
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=94.84 E-value=0.33 Score=45.54 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCcEEEEE---ecCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHh----cCCCcEEEe
Q 018919 194 EDVKWLQTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLD 265 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~---v~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~----~~~ipvia~ 265 (349)
+.++.+++..+.|...|. ..+.+++..+.++| +|+|.+.+.+..+ ..+....+ +..+++ ..++.++++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE---LDPAVLIL-KARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH---HHHHHHHH-HHHHhhhhcCCCceEEEEe
Confidence 457777776542344443 25688999999999 9999886542211 11111111 122211 136789999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 266 GGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 266 GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
|||. .+.+.+....|.|.+.+|+.+.
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9997 7888888789999999999765
No 423
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=94.80 E-value=0.47 Score=41.21 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHH---HhcCCcEEEEEe
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQ---TITKLPILVKGV 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~---~~~~~pv~vK~v 212 (349)
...+.++++.+.|++.+.+.+.... ... .+.+++++ +.+++++++.
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~~----------------------------~~~~~~~~~~i~~~~~~~~~~l~~~-- 62 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDLS----------------------------ARELLELARALRELCRKYGVPLIIN-- 62 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCC----------------------------HHHHHHHHHHHHHHHHHhCCeEEEe--
Confidence 3456788888889998876553210 001 23344443 3457777753
Q ss_pred cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchH
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 290 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~ 290 (349)
+..+.+.++|+|++.+... ......+. +.. +........+++.+++.++...|+|.|.++.-
T Consensus 63 ---~~~~~a~~~g~~~vh~~~~--------~~~~~~~~---~~~--~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~ 124 (196)
T cd00564 63 ---DRVDLALAVGADGVHLGQD--------DLPVAEAR---ALL--GPDLIIGVSTHSLEEALRAEELGADYVGFGPV 124 (196)
T ss_pred ---ChHHHHHHcCCCEEecCcc--------cCCHHHHH---HHc--CCCCEEEeeCCCHHHHHHHhhcCCCEEEECCc
Confidence 3466789999998866321 01112222 222 22333444468999999999999999999753
No 424
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.79 E-value=0.27 Score=46.32 Aligned_cols=92 Identities=20% Similarity=0.336 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-...-.. .-.+.+..+++.+++++||++.=|-.+-+++++ |-.+|||+|++..|++
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 45677899999998665442211111 123455556666667899997766666677654 3347999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+.. .++++.++++.+.+
T Consensus 105 ~~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAE 121 (285)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 632 34555555555444
No 425
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=94.78 E-value=0.63 Score=44.85 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=60.5
Q ss_pred CceEEEEeec---CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH
Q 018919 123 GIRFFQLYVY---KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL 199 (349)
Q Consensus 123 ~~~~~Ql~~~---~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i 199 (349)
.|..+|--.+ .|.+.+.+.+++++++|++.+-+++.. .+..+.+++|
T Consensus 26 ~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~------------------------------~~~a~al~~I 75 (360)
T PRK00366 26 APIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPD------------------------------MEAAAALPEI 75 (360)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCC------------------------------HHHHHhHHHH
Confidence 3455665332 355667888899999999998766532 1114669999
Q ss_pred HHhcCCcEEEEEecCHHHHHHHHHcCCCEEEE
Q 018919 200 QTITKLPILVKGVLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 200 ~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v 231 (349)
++..++|+++=+=.++..|..++++|+|.|-+
T Consensus 76 ~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRI 107 (360)
T PRK00366 76 KKQLPVPLVADIHFDYRLALAAAEAGADALRI 107 (360)
T ss_pred HHcCCCCEEEecCCCHHHHHHHHHhCCCEEEE
Confidence 99999999986668999999999999999987
No 426
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.77 E-value=0.4 Score=45.98 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=60.4
Q ss_pred CceEEEEeecC-C---hhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHH
Q 018919 123 GIRFFQLYVYK-D---RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKW 198 (349)
Q Consensus 123 ~~~~~Ql~~~~-~---~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~ 198 (349)
.+..+.+-... + .+...+.++.++++|+++|.||-.+.. .+++.-+. .+ ...+..|+.+.+
T Consensus 124 ~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~--------~qg~sg~~---~~----~~~~~~~~~i~~ 188 (318)
T TIGR00742 124 IPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW--------LSGLSPKE---NR----EIPPLRYERVYQ 188 (318)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh--------hcCCCccc---cc----cCCchhHHHHHH
Confidence 45556553321 1 145567889999999999998865421 01221000 00 011222888999
Q ss_pred HHHhc-CCcEEEE-EecCHHHHHHHHHcCCCEEEEe
Q 018919 199 LQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 199 i~~~~-~~pv~vK-~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+++.. ++||+.- ++.++++++.+.+ |||+|.++
T Consensus 189 vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 189 LKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred HHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 99887 8998654 4789999999886 99999883
No 427
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.75 E-value=0.22 Score=46.97 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=58.6
Q ss_pred HHHHHHc-CCCEEEEecCCCCCCC-CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 218 ARIAVQA-GAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 218 a~~a~~~-G~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
++.+.+. |+++|.+.++.|-... +-....+.+..+++.+.+++|||+.=|-.+-.|+++ +-.+|||+|++-.|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4567778 9999999776442111 111123455556666667899998554445555553 345899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLREE 313 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~e 313 (349)
++. -.++++.++++.+.+.
T Consensus 107 y~~---~~~~~i~~~~~~v~~a 125 (288)
T cd00954 107 YYK---FSFEEIKDYYREIIAA 125 (288)
T ss_pred CCC---CCHHHHHHHHHHHHHh
Confidence 764 2355666666555543
No 428
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.72 E-value=0.14 Score=50.97 Aligned_cols=106 Identities=22% Similarity=0.213 Sum_probs=62.7
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccc-cCCCCCC---ch-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-FQGLDLG---KM-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~-~~~~~~~---~~-~~~i~ 197 (349)
.|.++.|-. +...+.+.++.++++|++++.+. ++-. +...-|+...-..| .+..+. ..++-.+ .. |+.|.
T Consensus 169 ~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p-~~~~~~~~gg~SG~a~~p~~l~~v~ 243 (420)
T PRK08318 169 LPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMP-IVNGKSSHGGYCGPAVKPIALNMVA 243 (420)
T ss_pred CcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCc-eecCCCCcccccchhhhHHHHHHHH
Confidence 567887753 33346788889999999998742 2211 00000000000001 000010 0111111 23 88899
Q ss_pred HHHHhc---CCcEE-EEEecCHHHHHHHHHcCCCEEEEec
Q 018919 198 WLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 198 ~i~~~~---~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
++++.+ ++||+ +.++.+.+||...+.+|||+|.+..
T Consensus 244 ~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 244 EIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred HHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 999887 78976 6668999999999999999999853
No 429
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.71 E-value=0.18 Score=47.88 Aligned_cols=101 Identities=25% Similarity=0.228 Sum_probs=61.0
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHc--CCCEEEEecCCCCCC-----chhHHhhhhcCCCCcCcccccCCCCCCch---
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLG-----RREADIKNRFTLPPFLTLKNFQGLDLGKM--- 192 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~--G~~~i~i~~d~p~~g-----~r~~d~~~~~~~p~~~~~~~~~~~~~~~~--- 192 (349)
.|.++.|-...+.+.+.+.++.+.+. |++++.+. ++-..+ .|.+- ..+.+ ....++-.+..
T Consensus 158 iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~id~~~~~~-----~~~~~---~~~gG~SG~~i~~~ 228 (294)
T cd04741 158 IPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLVLDPERETV-----VLKPK---TGFGGLAGAYLHPL 228 (294)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCccccccCCCCCc-----ccCCC---CCCCCcCchhhHHH
Confidence 57888886655555667788888888 89988742 221000 01000 00000 00111111111
Q ss_pred -HHHHHHHHHhcC--CcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 -DEDVKWLQTITK--LPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 -~~~i~~i~~~~~--~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.++++++..+ +||+ +.++.+.+|+.+.+.+|||+|.+.
T Consensus 229 al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ 272 (294)
T cd04741 229 ALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVG 272 (294)
T ss_pred HHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence 466788888884 8975 455899999999999999999984
No 430
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=94.71 E-value=1.4 Score=40.32 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++++|++.|.+|+-- |.. . .+++..+++..+.|+-+-+..+.|
T Consensus 27 v~aA~~a~~aGAdgITvHlRe-----------------------------DrRHI~d~Dv~~L~~~~~~~lNlE~a~~~e 77 (239)
T PRK05265 27 VRAALIAEQAGADGITVHLRE-----------------------------DRRHIRDRDVRLLRETLKTELNLEMAATEE 77 (239)
T ss_pred HHHHHHHHHcCCCEEEecCCC-----------------------------CcccCCHHHHHHHHHhcCCCEEeccCCCHH
Confidence 467778899999999988732 222 2 467999998888898888888999
Q ss_pred HHHHHHHcCCCEEEEecCCCCC--CCCc---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIAVQAGAAGIIVSNHGARQ--LDYV---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~--~~~~---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+.+.-.+.+++-.-..-+ -++| ....+.|..+.+.++ -++.++.+ -+.+++..+..+|||.|=+-
T Consensus 78 m~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid---P~~~qi~~A~~~GAd~VELh 154 (239)
T PRK05265 78 MLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID---PDPEQIEAAAEVGADRIELH 154 (239)
T ss_pred HHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHhCcCEEEEe
Confidence 9999999999999986421111 1122 123455555555543 25778887 56889989999999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+--+.
T Consensus 155 TG~yA 159 (239)
T PRK05265 155 TGPYA 159 (239)
T ss_pred chhhh
Confidence 86553
No 431
>PLN02334 ribulose-phosphate 3-epimerase
Probab=94.71 E-value=1.8 Score=39.30 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=73.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v 212 (349)
|.....+.++++.+.|++.+.+.+--. .| .| +-.+ .+.++++++.++.|+-+...
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~-----------~f-~~------------~~~~g~~~~~~l~~~~~~~~~vhlm 73 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDG-----------HF-VP------------NLTIGPPVVKALRKHTDAPLDCHLM 73 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccC-----------Cc-CC------------ccccCHHHHHHHHhcCCCcEEEEec
Confidence 444566788899999999887644210 01 01 1112 37788888877777655554
Q ss_pred -cCH-HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhC--CCEEEEc
Q 018919 213 -LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIG 288 (349)
Q Consensus 213 -~~~-~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~G--A~~V~ig 288 (349)
.++ +....+.++|+|+|++ |.+. +........+..+++. ++-+-.+-.-.|+.+.++.+..+ +|.|++|
T Consensus 74 v~~p~d~~~~~~~~gad~v~v--H~~q--~~~d~~~~~~~~i~~~---g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~ 146 (229)
T PLN02334 74 VTNPEDYVPDFAKAGASIFTF--HIEQ--ASTIHLHRLIQQIKSA---GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVM 146 (229)
T ss_pred cCCHHHHHHHHHHcCCCEEEE--eecc--ccchhHHHHHHHHHHC---CCeEEEEECCCCCHHHHHHHHhccCCCEEEEE
Confidence 344 4577889999999988 5441 0011123444444332 33233332223667777666544 9999998
Q ss_pred hH
Q 018919 289 RP 290 (349)
Q Consensus 289 ~~ 290 (349)
+-
T Consensus 147 ~v 148 (229)
T PLN02334 147 SV 148 (229)
T ss_pred EE
Confidence 63
No 432
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=94.68 E-value=0.44 Score=41.95 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch---HHHHHHHHHhcCCcEEEEEecC
Q 018919 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM---DEDVKWLQTITKLPILVKGVLT 214 (349)
Q Consensus 138 ~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~pv~vK~v~~ 214 (349)
..+.++++.+.|++.+.+..... .+.++ ...+..+.+.++.|+++.
T Consensus 15 ~~~~~~~~~~~g~~~v~lR~~~~---------------------------~~~~~~~~~~~l~~~~~~~~~~l~i~---- 63 (196)
T TIGR00693 15 LLNRVEAALKGGVTLVQLRDKGS---------------------------NTRERLALAEKLQELCRRYGVPFIVN---- 63 (196)
T ss_pred HHHHHHHHHhcCCCEEEEecCCC---------------------------CHHHHHHHHHHHHHHHHHhCCeEEEE----
Confidence 44567777888999887643210 01111 234556666678898874
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 215 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 215 ~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
++.+.+.+.|+|+|.+... . . .. ..+++.++.. .+....+++.+++.++..+|||.|.+|.-|
T Consensus 64 -~~~~la~~~g~~GvHl~~~---~----~-~~---~~~r~~~~~~--~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~ 126 (196)
T TIGR00693 64 -DRVDLALALGADGVHLGQD---D----L-PA---SEARALLGPD--KIIGVSTHNLEELAEAEAEGADYIGFGPIF 126 (196)
T ss_pred -CHHHHHHHcCCCEEecCcc---c----C-CH---HHHHHhcCCC--CEEEEeCCCHHHHHHHhHcCCCEEEECCcc
Confidence 3567888999999987421 0 0 11 1222333212 344566999999999999999999998644
No 433
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.66 E-value=1.4 Score=41.09 Aligned_cols=139 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCeEEecCCC------------CCCHHHHHhhCC------CceEEEEeec----
Q 018919 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS------------TSSVEEVASTGP------GIRFFQLYVY---- 132 (349)
Q Consensus 75 ~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~~~~------~~~~~Ql~~~---- 132 (349)
++.|.++ +...|+.+.++|+..++...+ ..+++++..... ...++-.-.+
T Consensus 17 i~~~tay--------D~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y 88 (264)
T PRK00311 17 IVMLTAY--------DYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSY 88 (264)
T ss_pred EEEEeCC--------CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCc
Q ss_pred -CChhHHHHHHHHHHH-cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEE-
Q 018919 133 -KDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPIL- 208 (349)
Q Consensus 133 -~~~~~~~~~~~~~~~-~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~- 208 (349)
.+++...+.+.++.+ +|++++-| -+... .+.|+.+++. ++||+
T Consensus 89 ~~~~~~av~~a~r~~~~aGa~aVki--------------------------------Edg~~~~~~I~al~~a-gIpV~g 135 (264)
T PRK00311 89 QASPEQALRNAGRLMKEAGAHAVKL--------------------------------EGGEEVAETIKRLVER-GIPVMG 135 (264)
T ss_pred cCCHHHHHHHHHHHHHHhCCeEEEE--------------------------------cCcHHHHHHHHHHHHC-CCCEee
Q ss_pred --------------EEEe--------cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 209 --------------VKGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 209 --------------vK~v--------~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.|.. ...++++...++|||.|.+ -+.+. +...++.+.+ ++|+|+-|
T Consensus 136 HiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~l---------E~v~~-~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 136 HLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVL---------ECVPA-ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred eecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEE---------cCCCH-HHHHHHHHhC--CCCEEEec
No 434
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.64 E-value=0.25 Score=46.73 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=59.4
Q ss_pred HHHHHH-cCCCEEEEecCCCCCCCCc-hhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 218 ARIAVQ-AGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 218 a~~a~~-~G~d~I~v~~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
++.+.+ .|+++|.+.++.|-...-. ....+.+..+++.+++++|||+.=|-.+-.|+++ +-++|||+|++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 456778 9999999977644211111 1123455566667777899998776666777754 345899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~ 312 (349)
++.. .++++.++++.+.+
T Consensus 110 y~~~---~~~~l~~~f~~va~ 127 (293)
T PRK04147 110 YYPF---SFEEICDYYREIID 127 (293)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7632 23455545444433
No 435
>TIGR03586 PseI pseudaminic acid synthase.
Probab=94.61 E-value=1 Score=43.41 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
..+.+.++..+++++. .+.+.+.+..+.+.|++++.+... ....+..|..+.+. +.|||.+-|..+-++
T Consensus 80 ~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPvilstG~~t~~E 148 (327)
T TIGR03586 80 KELFERAKELGLTIFS-SPFDETAVDFLESLDVPAYKIASF-------EITDLPLIRYVAKT---GKPIIMSTGIATLEE 148 (327)
T ss_pred HHHHHHHHHhCCcEEE-ccCCHHHHHHHHHcCCCEEEECCc-------cccCHHHHHHHHhc---CCcEEEECCCCCHHH
Confidence 4466667888999875 567888999999999999999532 12235667666653 789999999999999
Q ss_pred HHHHHH----hCCCEEEE
Q 018919 274 VFKALA----LGASGIFI 287 (349)
Q Consensus 274 v~kal~----~GA~~V~i 287 (349)
+..|+. .|..-|.+
T Consensus 149 i~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 149 IQEAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHHHHHCCCCcEEE
Confidence 988775 47654555
No 436
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.61 E-value=0.31 Score=45.71 Aligned_cols=93 Identities=19% Similarity=0.348 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHH
Q 018919 217 DARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 291 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~ 291 (349)
.++.+.+.|+++|.+.++-|-...-.. ...+.+..+++.+.+++||++.=|-.+..++++ +-.+|||+|++..|+
T Consensus 26 ~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 26 LIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred HHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 356678899999999765442111111 123445555666666788886655556666665 344899999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~ 312 (349)
++. ..++++.++++.+.+
T Consensus 106 ~~~---~~~~~l~~~~~~ia~ 123 (284)
T cd00950 106 YNK---PSQEGLYAHFKAIAE 123 (284)
T ss_pred cCC---CCHHHHHHHHHHHHh
Confidence 763 234555555555544
No 437
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.60 E-value=0.41 Score=45.43 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=58.8
Q ss_pred HHHHhcCCcEEEEEec--CHH----HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 198 WLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 198 ~i~~~~~~pv~vK~v~--~~~----~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
.+++..+.|+++.... +++ .++.+.+.|+|+|.+.-. ....+....++.+.++++.+ ++||++- ++.+.
T Consensus 109 ~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~--~p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~s~ 183 (299)
T cd02809 109 EVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVD--TPVLGRRLTWDDLAWLRSQW--KGPLILK-GILTP 183 (299)
T ss_pred HHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecC--CCCCCCCCCHHHHHHHHHhc--CCCEEEe-ecCCH
Confidence 3334344688777653 333 456677899999998421 10001113467788888776 5898876 58999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 018919 272 TDVFKALALGASGIFIG 288 (349)
Q Consensus 272 ~dv~kal~~GA~~V~ig 288 (349)
+++.++..+|||+|.+.
T Consensus 184 ~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 184 EDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999999884
No 438
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.51 E-value=4.2 Score=38.12 Aligned_cols=176 Identities=18% Similarity=0.119 Sum_probs=101.2
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCCCCCHHHHHhhC------CCceEEEEeecCChhHHHHHH
Q 018919 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVASTG------PGIRFFQLYVYKDRNVVAQLV 142 (349)
Q Consensus 74 i~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~-----~~~~~~~~e~i~~~~------~~~~~~Ql~~~~~~~~~~~~~ 142 (349)
-++.|+.- +-.+.++-..+++-..+.|+-+++ |++...+.||..+.. .+..++++.. .+.....+++
T Consensus 7 a~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~-~~~~~ai~~a 84 (279)
T cd00953 7 PVITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGS-LNLEESIELA 84 (279)
T ss_pred ceecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCc-CCHHHHHHHH
Confidence 34566643 333455556777778888876654 233455666633211 1334556532 4566778899
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe-------cC
Q 018919 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV-------LT 214 (349)
Q Consensus 143 ~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v-------~~ 214 (349)
+.+++.|++++.+.. |.. ..+ .+++- .+..+.+.+ ++|+++=.. .+
T Consensus 85 ~~a~~~Gad~v~v~~--P~y-----------~~~-----------~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~ 138 (279)
T cd00953 85 RAAKSFGIYAIASLP--PYY-----------FPG-----------IPEEWLIKYFTDISS--PYPTFIYNYPKATGYDIN 138 (279)
T ss_pred HHHHHcCCCEEEEeC--CcC-----------CCC-----------CCHHHHHHHHHHHHh--cCCEEEEeCccccCCCCC
Confidence 999999999998643 210 000 01111 345666666 789887553 46
Q ss_pred HHHHHHHHHc--CCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 215 AEDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 215 ~~~a~~a~~~--G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++..+++.+. .+-+|.-++ ..+..+.++.+.. +++.|+ +| ..+.+..++.+||++.+.|...+
T Consensus 139 ~~~l~~L~~~~p~vvgiK~s~----------~d~~~~~~~~~~~-~~~~v~-~G---~d~~~~~~l~~Ga~G~i~~~~n~ 203 (279)
T cd00953 139 ARMAKEIKKAGGDIIGVKDTN----------EDISHMLEYKRLV-PDFKVY-SG---PDSLIFSALRSGLDGSVAAASNY 203 (279)
T ss_pred HHHHHHHHhcCCCEEEEEeCc----------cCHHHHHHHHHhC-CCeEEE-Ec---cHHHHHHHHHcCCCeEEechhhc
Confidence 7888888764 344444421 1233344443333 255554 33 23666788899999999998643
No 439
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=94.49 E-value=4.1 Score=37.84 Aligned_cols=183 Identities=22% Similarity=0.307 Sum_probs=99.2
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCC--CceEEEEeecCChhHHHHHHHHH-HHcC
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRA-ERAG 149 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~--~~~~~Ql~~~~~~~~~~~~~~~~-~~~G 149 (349)
-|+..|.+..+ .+--...|+..++.|.-+.-+.- .+| .|+-||=.. .+- ..+++++ .+.|
T Consensus 47 ~viAGPCsvEs---~E~i~~~A~~vk~~Ga~~lRGga----------fKPRTSPYsFQGlg---e~g-L~~l~~a~~~~G 109 (286)
T COG2876 47 RVIAGPCSVES---EEQVRETAESVKAAGAKALRGGA----------FKPRTSPYSFQGLG---EEG-LKLLKRAADETG 109 (286)
T ss_pred EEEecCcccCC---HHHHHHHHHHHHHcchhhccCCc----------CCCCCCcccccccC---HHH-HHHHHHHHHHcC
Confidence 35555665432 23335778888888888654321 123 456677433 222 3344444 4557
Q ss_pred CCEEEEecCCCCCCchhHHhhhh--cCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe--cCHHH----HHHH
Q 018919 150 FKAIALTVDTPRLGRREADIKNR--FTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV--LTAED----ARIA 221 (349)
Q Consensus 150 ~~~i~i~~d~p~~g~r~~d~~~~--~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v--~~~~~----a~~a 221 (349)
-..+.=-+|. +|+... +..--.++.+|. ++ ++.++++-+ .+.||++|-- .|.|+ |+-.
T Consensus 110 l~vvtEvm~~-------~~~e~~~~y~DilqvGARNM---QN---F~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI 175 (286)
T COG2876 110 LPVVTEVMDV-------RDVEAAAEYADILQVGARNM---QN---FALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYI 175 (286)
T ss_pred CeeEEEecCH-------HHHHHHHhhhhHHHhcccch---hh---hHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHH
Confidence 6554211221 111111 100000122221 11 355666543 5899999975 45555 5556
Q ss_pred HHcCCCEEEEecCCCCCCCCc-hh--hHHHHHHHHHHhcCCCcEEEecCCCCHHH------HHHHHHhCCCEEEEc
Q 018919 222 VQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPVFLDGGVRRGTD------VFKALALGASGIFIG 288 (349)
Q Consensus 222 ~~~G~d~I~v~~~gg~~~~~~-~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~d------v~kal~~GA~~V~ig 288 (349)
+..|-..|++--.|=|..+.. +- ++.+++.+++.. ..|||+|=-=.+|.. +..|++.|||++|+-
T Consensus 176 ~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 176 LSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred HhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 678988888876676654432 11 356677776654 799999743333322 235778999999986
No 440
>PLN02979 glycolate oxidase
Probab=94.48 E-value=0.38 Score=46.83 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+|+.|..+++.- ++|||+=| |.+++|+.+++.+|+|+|.|+.
T Consensus 211 tW~dl~wlr~~~--~~PvivKg-V~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 211 SWKDVQWLQTIT--KLPILVKG-VLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CHHHHHHHHhcc--CCCEEeec-CCCHHHHHHHHhcCCCEEEECC
Confidence 567777777654 78988755 7899999999999999999875
No 441
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.42 E-value=0.23 Score=47.80 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=49.5
Q ss_pred HHHHHHHHcCC--CEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~~G~--d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+.+..+.++|+ |.|.+...-| ......+.+.++++..+ ++||| .|.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi-~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVI-AGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEE-EEecCCHHHHHHHHHcCcCEEEEC
Confidence 56788899965 9999965322 23445677888877652 35554 456889999999999999999877
No 442
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.42 E-value=0.21 Score=50.98 Aligned_cols=234 Identities=18% Similarity=0.165 Sum_probs=126.4
Q ss_pred hhcccccccccccC---CCCCCCcceeEc--------CeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCC
Q 018919 41 NAFSRILFRPRILI---DVSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW 109 (349)
Q Consensus 41 ~~~~~~~l~p~~l~---~~~~~d~s~~l~--------g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~ 109 (349)
.+||++.|+|.... ..+++|++|.+- +.++..|+..|+|...+ +-+||.+..+.|...++..
T Consensus 10 ~tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~Satmdtvt------gdalAiala~~gG~g~Ih~- 82 (502)
T PRK07107 10 RTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVS------DDNMAIALAREGGLSFIFG- 82 (502)
T ss_pred ccccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHh------hHHHHHHHHHcCCCeEeeC-
Confidence 47999999998763 457889998875 46688899999997643 5689999888888877643
Q ss_pred CCCCHHHHHhh----CC--CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCC----CCCC-chhHHhhhhcCCCCc
Q 018919 110 STSSVEEVAST----GP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPF 178 (349)
Q Consensus 110 ~~~~~e~i~~~----~~--~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~----p~~g-~r~~d~~~~~~~p~~ 178 (349)
++++|+.++. +. .......+.-.....+.+.++.+.+.+...+.|.=+. -..| ...+|++.....+..
T Consensus 83 -n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~ 161 (502)
T PRK07107 83 -SQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDT 161 (502)
T ss_pred -CCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCC
Confidence 2455553321 11 0000111111111234456666666676666542210 0000 112333311000000
Q ss_pred -----Ccc-cccCCCCCCch--HHHHHHHHHh--cCCcEE----------------------------------EEEec-
Q 018919 179 -----LTL-KNFQGLDLGKM--DEDVKWLQTI--TKLPIL----------------------------------VKGVL- 213 (349)
Q Consensus 179 -----~~~-~~~~~~~~~~~--~~~i~~i~~~--~~~pv~----------------------------------vK~v~- 213 (349)
++. +... ..+++. .+.++.+.+. ..+||+ ...+.
T Consensus 162 ~V~dIMt~~~~~i-tv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~ 240 (502)
T PRK07107 162 KVKDFMTPFEKLV-TANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINT 240 (502)
T ss_pred CHHHHhCCCCCeE-EECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccCh
Confidence 000 0000 001111 1112222211 012222 11121
Q ss_pred --CHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 214 --TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 214 --~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
..+.++.+.++|+|.|++.+.-|. .....+.+.++++..+.++ .+..|-|-+++++..++.+|||++.+|
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~-~V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSV-KVGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCc-eEEeccccCHHHHHHHHHcCCCEEEEC
Confidence 125578899999999999643221 1223677888877664233 466788999999999999999999884
No 443
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.39 E-value=0.21 Score=47.04 Aligned_cols=93 Identities=18% Similarity=0.308 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCch-hhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHhCCCEEEEchH
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRP 290 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka----l~~GA~~V~ig~~ 290 (349)
+.++.+.+.|++++.+.++.|-...-.. -..+.+..+++.+++++||++.=|=.+-.++++. -.+|||+|++..|
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 3356678899999999766442111111 1234455556666678999887666666776653 3489999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHH
Q 018919 291 VVYSLAAEGEKGVRRVLEMLR 311 (349)
Q Consensus 291 ~l~~~~~~G~~gv~~~l~~l~ 311 (349)
+++. ..++++.++++.+.
T Consensus 106 ~~~~---~s~~~l~~y~~~ia 123 (289)
T PF00701_consen 106 YYFK---PSQEELIDYFRAIA 123 (289)
T ss_dssp TSSS---CCHHHHHHHHHHHH
T ss_pred cccc---chhhHHHHHHHHHH
Confidence 8753 23455555544443
No 444
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=94.32 E-value=0.44 Score=43.28 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=36.4
Q ss_pred HHHHHHHHHhc-CCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 193 DEDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 193 ~~~i~~i~~~~-~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
.+.++.+++.+ ++|+++.+ +.+.++++.+.++|||.|++.+
T Consensus 167 ~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 167 PELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred HHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 57899999988 89998876 6899999999999999999965
No 445
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=94.29 E-value=0.42 Score=42.89 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=54.1
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~- 211 (349)
.+++.....+..++..|++.+-+-- +. ++. .+...+.++++++.+++|+++.+
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~-~s-----------Ga~--------------~~v~~e~i~~Vk~~~~~Pv~vGGG 184 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEA-GS-----------GAS--------------YPVNPETISLVKKASGIPLIVGGG 184 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEc-CC-----------CCC--------------CCCCHHHHHHHHHhhCCCEEEeCC
Confidence 3566777777888888999876522 11 010 01114779999998899998877
Q ss_pred ecCHHHHHHHHHcCCCEEEE
Q 018919 212 VLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 212 v~~~~~a~~a~~~G~d~I~v 231 (349)
+.++|+++.+.++|+|+|++
T Consensus 185 Irs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 185 IRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CCCHHHHHHHHHcCCCEEEe
Confidence 68999999999999999987
No 446
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=94.27 E-value=0.35 Score=43.86 Aligned_cols=72 Identities=26% Similarity=0.343 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEEE
Q 018919 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVKG 211 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~ 211 (349)
.+++.....+..++..|...+.+. .+ |. + .+ .+.++.+++.+ +.|+++.+
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe-~S---G~-----------~-----------~~---~e~I~~v~~~~~~~pl~vGG 182 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE-YS---GA-----------Y-----------GP---PEVVRAVKKVLGDTPLIVGG 182 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC-CC---CC-----------c-----------CC---HHHHHHHHHhcCCCCEEEeC
Confidence 466777778888888897766654 11 10 0 01 46799999988 99999877
Q ss_pred -ecCHHHHHHHHHcCCCEEEEec
Q 018919 212 -VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 212 -v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
+.++|+|+.+.++|||.|++.+
T Consensus 183 GIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 183 GIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999999999999999954
No 447
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.27 E-value=1.2 Score=38.29 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec-
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL- 213 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~- 213 (349)
+...+.++.+.+.|++.+.+...... +.. .... ++.++.+++..++|+++....
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~--------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSD--------------PEE----------AETDDKEVLKEVAAETDLPLGVQLAIN 67 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEEC--------------ccc----------CCCccccHHHHHHhhcCCcEEEEEccC
Confidence 45677888888889998876432211 100 0011 245777777778999887752
Q ss_pred CHHH-----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 214 TAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 214 ~~~~-----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+... ++.+.++|+|+|.+....+. ...-..+.+.++++.+ .+++++..-......+...+...|++.+.+.
T Consensus 68 ~~~~~~~~~a~~~~~~g~d~v~l~~~~~~---~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~ 143 (200)
T cd04722 68 DAAAAVDIAAAAARAAGADGVEIHGAVGY---LAREDLELIRELREAV-PDVKVVVKLSPTGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred CchhhhhHHHHHHHHcCCCEEEEeccCCc---HHHHHHHHHHHHHHhc-CCceEEEEECCCCccchhhHHHcCCCEEEEc
Confidence 2222 46899999999999543211 0011345566666655 3577776654443333222467899999998
Q ss_pred hHH
Q 018919 289 RPV 291 (349)
Q Consensus 289 ~~~ 291 (349)
..+
T Consensus 144 ~~~ 146 (200)
T cd04722 144 NGG 146 (200)
T ss_pred CCc
Confidence 644
No 448
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=94.24 E-value=2 Score=39.16 Aligned_cols=123 Identities=21% Similarity=0.189 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++++|++.|.+|+-- |.. . .+++..+++..+.|+-+-+..+.+
T Consensus 24 v~aA~~a~~aGAdgITvHlRe-----------------------------DrRHI~d~Dv~~l~~~~~~~lNlE~a~~~e 74 (237)
T TIGR00559 24 LRAALIAEQAGADGITVHLRE-----------------------------DRRHIQDRDVYDLKEALTTPFNIEMAPTEE 74 (237)
T ss_pred HHHHHHHHHcCCCEEEecCCC-----------------------------CcCcCCHHHHHHHHHHcCCCEEeccCCCHH
Confidence 456778899999999988732 222 2 467999999888899888889999
Q ss_pred HHHHHHHcCCCEEEEecCCCCCC--CCc---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIAVQAGAAGIIVSNHGARQL--DYV---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~--~~~---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+.+.-.+.+++-.--.-++ ++| ....+.|.++.+.++ -++.++.+-. .+++..+..+|||.|=+-
T Consensus 75 mi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~---~~qi~~A~~~GAd~VELh 151 (237)
T TIGR00559 75 MIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD---KDQISAAAEVGADRIEIH 151 (237)
T ss_pred HHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCEEEEe
Confidence 99999999999999864211111 122 123455555555543 2577887764 788888889999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+--+.
T Consensus 152 TG~YA 156 (237)
T TIGR00559 152 TGPYA 156 (237)
T ss_pred chhhh
Confidence 86553
No 449
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=94.24 E-value=5.1 Score=37.95 Aligned_cols=191 Identities=18% Similarity=0.115 Sum_probs=99.7
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCC------------CCCHHHHHh-------hCCCceEEEE---e
Q 018919 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS------------TSSVEEVAS-------TGPGIRFFQL---Y 130 (349)
Q Consensus 73 Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~-------~~~~~~~~Ql---~ 130 (349)
.++.+|-.+ |.--|+.+.+.|...+..+.. ..+++++.. ...-|..+-+ |
T Consensus 15 ~~~~~pg~~--------D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~Gy 86 (290)
T TIGR02321 15 RLFTAMAAH--------NPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGF 86 (290)
T ss_pred CCEEecccc--------CHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCC
Confidence 356677433 235778888888886643321 124444332 2222333322 3
Q ss_pred ecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEE
Q 018919 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPIL 208 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~ 208 (349)
+ +...+.+.+++++++|+.+|.|- |...+ +| .++..+ ....+.+.+. .+.|+..++.- +.+++
T Consensus 87 G--~~~~v~~tV~~~~~aGvagi~IE-Dq~~p-k~-----cg~~~~------g~~~l~~~ee~~~kI~Aa~~a~~~~d~~ 151 (290)
T TIGR02321 87 G--NAVNVHYVVPQYEAAGASAIVME-DKTFP-KD-----TSLRTD------GRQELVRIEEFQGKIAAATAARADRDFV 151 (290)
T ss_pred C--CcHHHHHHHHHHHHcCCeEEEEe-CCCCC-cc-----cccccC------CCccccCHHHHHHHHHHHHHhCCCCCEE
Confidence 2 33346778899999999887652 32111 00 111000 0001123332 45566665543 44454
Q ss_pred EEEe-------cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 018919 209 VKGV-------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 209 vK~v-------~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka 277 (349)
+--. ...++ ++...++|||.|.+ +|+ ..+.+.+.++.+.+...+|++...|-.-.-.+...
T Consensus 152 I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv--~~~------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l 223 (290)
T TIGR02321 152 VIARVEALIAGLGQQEAVRRGQAYEEAGADAILI--HSR------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADI 223 (290)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHcCCCEEEe--cCC------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHH
Confidence 4222 11233 56688999999988 321 23467777888877555788654431111123345
Q ss_pred HHhC-CCEEEEchHHHHH
Q 018919 278 LALG-ASGIFIGRPVVYS 294 (349)
Q Consensus 278 l~~G-A~~V~ig~~~l~~ 294 (349)
-++| ...|..|...+++
T Consensus 224 ~~lg~~~~v~~g~~~~~a 241 (290)
T TIGR02321 224 AALSKVGIVIYGNHAIRA 241 (290)
T ss_pred HHhcCCcEEEEChHHHHH
Confidence 5688 7888888776654
No 450
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=94.17 E-value=2 Score=41.42 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc-CCcEEE-EEe
Q 018919 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT-KLPILV-KGV 212 (349)
Q Consensus 136 ~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~-~~pv~v-K~v 212 (349)
+...+.++.++++|++++.+|-... . ..++.-+. + ..-+.. |+.++++++.. ++||+. +++
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh~Rt~-------~-~~g~~~~~-----~---~~~~~~~~~~i~~v~~~~~~iPVI~nGgI 214 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVHARKA-------W-LKGLSPKE-----N---REIPPLDYDRVYRLKRDFPHLTIEINGGI 214 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCch-------h-hcCCCccc-----c---ccCCCcCHHHHHHHHHhCCCCeEEEECCc
Confidence 3456788899999999998873221 0 01111000 0 001223 88999999886 899876 447
Q ss_pred cCHHHHHHHHHcCCCEEEE
Q 018919 213 LTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v 231 (349)
.++++++.+.+ |+|+|.+
T Consensus 215 ~s~eda~~~l~-~aDgVmI 232 (333)
T PRK11815 215 KTLEEAKEHLQ-HVDGVMI 232 (333)
T ss_pred CCHHHHHHHHh-cCCEEEE
Confidence 89999999987 7999988
No 451
>PLN02535 glycolate oxidase
Probab=94.14 E-value=0.47 Score=46.33 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=59.0
Q ss_pred HHHhcCCcEEEEEec------CHHHHHHHHHcCCCEEEEecC----CCCC--------------CC--------------
Q 018919 199 LQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNH----GARQ--------------LD-------------- 240 (349)
Q Consensus 199 i~~~~~~pv~vK~v~------~~~~a~~a~~~G~d~I~v~~~----gg~~--------------~~-------------- 240 (349)
+.+..+.|.+..... +.+..++|.++|+.+|+++-- |.|. ..
T Consensus 118 va~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~ 197 (364)
T PLN02535 118 VASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSG 197 (364)
T ss_pred HHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcccccc
Confidence 333345677877763 235578888899998888521 1110 00
Q ss_pred ---------CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 241 ---------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 241 ---------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+|+.+..+++.. ++||++ .||.+++|+.++..+|+|+|.+.
T Consensus 198 ~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 198 LEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred HHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123567777777755 689886 55999999999999999999885
No 452
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.07 E-value=3.5 Score=39.57 Aligned_cols=134 Identities=17% Similarity=0.194 Sum_probs=79.4
Q ss_pred hHHHHHHHHHcCCeEEecCCC------------CCCHHHHHh-------hCCCceEE-EE-ee-c-CChhHHHHHHHHH-
Q 018919 90 EYATARAASAAGTIMTLSSWS------------TSSVEEVAS-------TGPGIRFF-QL-YV-Y-KDRNVVAQLVRRA- 145 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~~------------~~~~e~i~~-------~~~~~~~~-Ql-~~-~-~~~~~~~~~~~~~- 145 (349)
|..+|+.+.++|+..++-.-+ +.+++++.. ..+.++.+ -+ |. . .+++...+.+.++
T Consensus 44 D~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~ 123 (332)
T PLN02424 44 DYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRML 123 (332)
T ss_pred CHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 568999999999998753211 246666532 22333322 11 11 1 3566555556666
Q ss_pred HHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEe-------------
Q 018919 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGV------------- 212 (349)
Q Consensus 146 ~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v------------- 212 (349)
.+.|++++-| ..- .....+.|+.+. ..++||+--+-
T Consensus 124 ~eaGa~aVKl--EGg----------------------------~~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGyk 172 (332)
T PLN02424 124 KEGGMDAVKL--EGG----------------------------SPSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFR 172 (332)
T ss_pred HHhCCcEEEE--CCC----------------------------cHHHHHHHHHHH-HcCCCEEEeecccceeehhhcCcc
Confidence 6789988653 210 000135677776 35888872211
Q ss_pred ---cC-------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 213 ---LT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 213 ---~~-------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
.+ .++|+.+.++||++|++-+ .+. ....+|.+.+ .+|+|+-|
T Consensus 173 vqGr~~~~a~~li~dA~ale~AGAf~ivLE~---------Vp~-~la~~It~~l--~IPtIGIG 224 (332)
T PLN02424 173 PQGRTAESAVKVVETALALQEAGCFAVVLEC---------VPA-PVAAAITSAL--QIPTIGIG 224 (332)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCcEEEEcC---------CcH-HHHHHHHHhC--CCCEEeec
Confidence 11 2578889999999999832 222 2667777777 79998654
No 453
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.06 E-value=0.74 Score=40.63 Aligned_cols=117 Identities=25% Similarity=0.261 Sum_probs=79.8
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCC
Q 018919 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKL 205 (349)
Q Consensus 126 ~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 205 (349)
.+-+....+.+...+.++.+.+.|++.++++...+. ..+.++.+++....
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~------------------------------~~e~~~~~~~~~~~ 63 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ------------------------------PAELISQLREKLPE 63 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC------------------------------HHHHHHHHHHhCCC
Confidence 344555578888889999999999999999875431 02345555554332
Q ss_pred -cEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 206 -PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 206 -pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
-+-...+.+.++++.|.++|+|+|++. | .+++ +.++++.. +++.+ -| +.|++++.++...|||.
T Consensus 64 ~~~g~gtvl~~d~~~~A~~~gAdgv~~p-~------~~~~----~~~~~~~~--~~~~i-~G-~~t~~e~~~A~~~Gady 128 (187)
T PRK07455 64 CIIGTGTILTLEDLEEAIAAGAQFCFTP-H------VDPE----LIEAAVAQ--DIPII-PG-ALTPTEIVTAWQAGASC 128 (187)
T ss_pred cEEeEEEEEcHHHHHHHHHcCCCEEECC-C------CCHH----HHHHHHHc--CCCEE-cC-cCCHHHHHHHHHCCCCE
Confidence 233334567799999999999999652 2 1121 22233333 45544 34 99999999999999999
Q ss_pred EEE
Q 018919 285 IFI 287 (349)
Q Consensus 285 V~i 287 (349)
|.+
T Consensus 129 v~~ 131 (187)
T PRK07455 129 VKV 131 (187)
T ss_pred EEE
Confidence 987
No 454
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=94.06 E-value=5.9 Score=38.02 Aligned_cols=81 Identities=23% Similarity=0.264 Sum_probs=59.5
Q ss_pred cCHHHHHHHH-HcCCCEEEEec---CCCCCCC-C--ch-hhHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 018919 213 LTAEDARIAV-QAGAAGIIVSN---HGARQLD-Y--VP-ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 271 (349)
Q Consensus 213 ~~~~~a~~a~-~~G~d~I~v~~---~gg~~~~-~--~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~------------- 271 (349)
.+|++|+... +.|+|.+-++. ||-.... + .| -.++.|.+|.+.+. ++|++.=||=..+
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 4688887766 47999999874 5543210 0 11 35789999998873 5899988875333
Q ss_pred ---------HHHHHHHHhCCCEEEEchHHHHH
Q 018919 272 ---------TDVFKALALGASGIFIGRPVVYS 294 (349)
Q Consensus 272 ---------~dv~kal~~GA~~V~ig~~~l~~ 294 (349)
+|+.||+.+|..-|=++|-+..+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHHHHH
Confidence 88999999999999999976543
No 455
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=94.04 E-value=0.45 Score=46.04 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=55.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~- 211 (349)
+.+...+.++.+++.|+|.+.++...... +. . . ..+.+ |+..+++|+.+++||++-+
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~~-~--~-----~~~~~~~~~~~~ik~~~~ipVi~~G~ 283 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------AR-I--D-----VYPGYQVPFAEHIREHANIATGAVGL 283 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------CC-C--C-----CCccccHHHHHHHHhhcCCcEEEeCC
Confidence 45667788899999999999887654210 00 0 0 01222 6778899999999986544
Q ss_pred ecCHHHHHHHHHcC-CCEEEE
Q 018919 212 VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 212 v~~~~~a~~a~~~G-~d~I~v 231 (349)
+.++++++.+++.| +|.|.+
T Consensus 284 i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 284 ITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred CCCHHHHHHHHHcCCCChHHh
Confidence 57899999999987 999866
No 456
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.04 E-value=0.44 Score=44.94 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=57.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchh-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----al~~GA~~V~ig~~~l 292 (349)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+++++||++.=|=.+-.++++ +-.+|||+|++-.|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 456788999999986554421111111 23445556666666789886555445566554 3347999999999987
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 018919 293 YSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~ 312 (349)
+. ..++++.++++.+.+
T Consensus 108 ~~---~~~~~i~~~~~~ia~ 124 (292)
T PRK03170 108 NK---PTQEGLYQHFKAIAE 124 (292)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 63 235565555555544
No 457
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.96 E-value=0.52 Score=46.02 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+|+.|..+++.- ++|||+=| |.+++|+.+++.+|+|+|.|..
T Consensus 212 tW~di~wlr~~~--~~PiivKg-V~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 212 SWKDVQWLQTIT--KLPILVKG-VLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CHHHHHHHHhcc--CCCEEeec-CCCHHHHHHHHHcCCCEEEECC
Confidence 566777777654 78988755 7899999999999999999874
No 458
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=93.95 E-value=0.39 Score=45.74 Aligned_cols=101 Identities=27% Similarity=0.288 Sum_probs=65.3
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCccccc-CCCCCCc---h-HHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF-QGLDLGK---M-DEDVK 197 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~-~~~~~~~---~-~~~i~ 197 (349)
.|.++.|-+ +.+.+.+.++.+++.|+|++.+ +++...+.+. |.... ++...+. .|+-.+. . .+.|+
T Consensus 162 ~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~-~NT~~~~~~i-d~~~~-----~~~~~~~~GGLSG~~ikp~al~~v~ 232 (310)
T COG0167 162 VPVFVKLAP--NITDIDEIAKAAEEAGADGLIA-INTTKSGMKI-DLETK-----KPVLANETGGLSGPPLKPIALRVVA 232 (310)
T ss_pred CceEEEeCC--CHHHHHHHHHHHHHcCCcEEEE-Eeeccccccc-ccccc-----ccccCcCCCCcCcccchHHHHHHHH
Confidence 567787754 6777889999999999999865 3433211110 11100 1111111 1111111 2 57788
Q ss_pred HHHHhcC--CcE-EEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 198 WLQTITK--LPI-LVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 198 ~i~~~~~--~pv-~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++++.++ +|| .+.++.+.+||..-+.+||+.|.|.
T Consensus 233 ~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~ 270 (310)
T COG0167 233 ELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVG 270 (310)
T ss_pred HHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheee
Confidence 8888876 996 4667899999999999999999884
No 459
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.94 E-value=1.2 Score=40.45 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 018919 194 EDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 273 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 273 (349)
+.++.+.+.+++|+++- +....|.+.|+|+|.+... + . .+.++++.++ .--+|+.+-.++-.+
T Consensus 61 ~~l~~l~~~~gv~liIN-----d~~dlA~~~~adGVHLg~~-----d--~----~~~~~r~~~~-~~~iiG~s~~~s~~~ 123 (221)
T PRK06512 61 EKLVPVIQEAGAAALIA-----GDSRIAGRVKADGLHIEGN-----L--A----ALAEAIEKHA-PKMIVGFGNLRDRHG 123 (221)
T ss_pred HHHHHHHHHhCCEEEEe-----CHHHHHHHhCCCEEEECcc-----c--c----CHHHHHHhcC-CCCEEEecCCCCHHH
Confidence 45666777778999874 3466788899999987421 1 0 1334444443 223565555678888
Q ss_pred HHHHHHhCCCEEEEchH
Q 018919 274 VFKALALGASGIFIGRP 290 (349)
Q Consensus 274 v~kal~~GA~~V~ig~~ 290 (349)
+.++.+.|||.|.+|.-
T Consensus 124 a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 124 AMEIGELRPDYLFFGKL 140 (221)
T ss_pred HHHhhhcCCCEEEECCC
Confidence 98988999999999964
No 460
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.89 E-value=0.39 Score=43.52 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHcCCCEEEEecCCCC-CCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHH
Q 018919 213 LTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 291 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~~~gg~-~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~ 291 (349)
.+.++++.+.+.|++-+++. .+.. +..+...+...+..+++.++.+.+++..||||-. ...+.-..+.|.+.+|||+
T Consensus 117 ~t~~~~~~l~~~g~~~~v~h-~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i~VtpGIr~~-~~~~~dq~rvd~iVVGR~I 194 (218)
T PRK13305 117 WTLDDARDWHRIGVRQAIYH-RGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPA-DLPLFKDIRVKAFIAGRAL 194 (218)
T ss_pred cCcchHHHHHHcCCHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHhCCCCcEEEeCCcCcc-ccccccccCCCEEEECCcc
Confidence 45566666777887644331 1110 0011122234455666666556779999999953 2234456788999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHH
Q 018919 292 VYSLAAEGEKGVRRVLEMLREEFEL 316 (349)
Q Consensus 292 l~~~~~~G~~gv~~~l~~l~~el~~ 316 (349)
..+ +......+.+.++++.
T Consensus 195 t~A------~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 195 AGA------ANPAQVAADFHAQIDA 213 (218)
T ss_pred cCC------CCHHHHHHHHHHHHHH
Confidence 753 2223456677777654
No 461
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.89 E-value=0.85 Score=39.63 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcC-CCcEEEecCCCC--------HHHHHHHHHhCCCEEE
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGIF 286 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~--------~~dv~kal~~GA~~V~ 286 (349)
+.++.+.+.|+++|.+.+ +.+..+.+..++ ++||++.=|-.+ -+.+.++..+|||+++
T Consensus 17 ~~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~ 83 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID 83 (201)
T ss_pred HHHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 345678889999998842 556666666666 788876444333 2445567779999999
Q ss_pred EchHHHHHHhhcCHHHHHHHHHHHHH
Q 018919 287 IGRPVVYSLAAEGEKGVRRVLEMLRE 312 (349)
Q Consensus 287 ig~~~l~~~~~~G~~gv~~~l~~l~~ 312 (349)
+..++.+.... .++++.++++.+.+
T Consensus 84 v~~~~~~~~~~-~~~~~~~~~~~i~~ 108 (201)
T cd00945 84 VVINIGSLKEG-DWEEVLEEIAAVVE 108 (201)
T ss_pred EeccHHHHhCC-CHHHHHHHHHHHHH
Confidence 98887654210 13444444444433
No 462
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=93.89 E-value=0.4 Score=44.13 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 018919 193 DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 272 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 272 (349)
|..|.+..+..++.++. .+.+.+.+..+.+.|++++.|... ....+..|..+++ .+.|||.+-|..+-+
T Consensus 58 ~~~L~~~~~~~gi~f~s-tpfd~~s~d~l~~~~~~~~KIaS~-------dl~n~~lL~~~A~---tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFS-TPFDEESVDFLEELGVPAYKIASG-------DLTNLPLLEYIAK---TGKPVILSTGMSTLE 126 (241)
T ss_dssp HHHHHHHHHHTT-EEEE-EE-SHHHHHHHHHHT-SEEEE-GG-------GTT-HHHHHHHHT---T-S-EEEE-TT--HH
T ss_pred HHHHHHHHHHcCCEEEE-CCCCHHHHHHHHHcCCCEEEeccc-------cccCHHHHHHHHH---hCCcEEEECCCCCHH
Confidence 55666666667887765 456889999999999999999532 2234566666655 379999999999999
Q ss_pred HHHHHHH-h---CCCEEE
Q 018919 273 DVFKALA-L---GASGIF 286 (349)
Q Consensus 273 dv~kal~-~---GA~~V~ 286 (349)
++.+|+. + |..-+.
T Consensus 127 EI~~Av~~~~~~~~~~l~ 144 (241)
T PF03102_consen 127 EIERAVEVLREAGNEDLV 144 (241)
T ss_dssp HHHHHHHHHHHHCT--EE
T ss_pred HHHHHHHHHHhcCCCCEE
Confidence 9988776 4 554443
No 463
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=93.86 E-value=1.7 Score=42.17 Aligned_cols=83 Identities=25% Similarity=0.335 Sum_probs=58.9
Q ss_pred CCcEEEEEec------CHHHHHHHHHcCCCEEEEecC----CCC--------CC-------------------------C
Q 018919 204 KLPILVKGVL------TAEDARIAVQAGAAGIIVSNH----GAR--------QL-------------------------D 240 (349)
Q Consensus 204 ~~pv~vK~v~------~~~~a~~a~~~G~d~I~v~~~----gg~--------~~-------------------------~ 240 (349)
+.|+++-... +.+..+++.++|+++|+++-. |.| +. .
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 3677765432 246678899999999998731 111 00 0
Q ss_pred CchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 241 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 241 ~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+..+++.+.++++.. ++||++- ||.+.+|+.++...|+|+|.+..
T Consensus 197 ~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 197 DPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 0124567788887766 7899987 68999999999999999999864
No 464
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.79 E-value=6.1 Score=37.28 Aligned_cols=179 Identities=13% Similarity=0.063 Sum_probs=103.0
Q ss_pred cceeecccccccccCChhhHHHHHHHHHcC-CeEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChh
Q 018919 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRN 136 (349)
Q Consensus 72 ~Pi~iApm~~~~l~~~~~~~~la~aa~~~G-~~~~~--~---~~~~~~~e~i~~-------~~~--~~~~~Ql~~~~~~~ 136 (349)
.|.++.|+.-..-.+.++-..+.+-..+.| +.+++ + ++...+.||..+ ... -+.++++.. .+.+
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~ 83 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLK 83 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHH
Confidence 366777875444344455567777778888 55443 2 334567766432 122 245566543 3556
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-hHHHHHHHHHhc-CCcEEEEEe--
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-MDEDVKWLQTIT-KLPILVKGV-- 212 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~~~~i~~i~~~~-~~pv~vK~v-- 212 (349)
.+.++++.+++.|++++.+.- |. |. +. +.+ ..+..+.+.+.+ ++|+++=.+
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~--P~-----------y~-~~-----------~~~~i~~yf~~v~~~~~~lpv~lYn~P~ 138 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVT--PF-----------YY-KF-----------SFPEIKHYYDTIIAETGGLNMIVYSIPF 138 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeC--Cc-----------CC-CC-----------CHHHHHHHHHHHHhhCCCCCEEEEeCcc
Confidence 778899999999999998632 21 00 10 111 245577776666 799986553
Q ss_pred -----cCHHHHHHHHHcC-CCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 018919 213 -----LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 286 (349)
Q Consensus 213 -----~~~~~a~~a~~~G-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ 286 (349)
.+++..+++.+.. +-+|.-+ . ..+..+.++.+..+ +..|+ +|. .+..+..+.+||++.+
T Consensus 139 ~tg~~l~~~~i~~L~~~pnv~giK~s--------~--~d~~~~~~~~~~~~-~~~v~-~G~---d~~~~~~l~~G~~G~i 203 (290)
T TIGR00683 139 LTGVNMGIEQFGELYKNPKVLGVKFT--------A--GDFYLLERLKKAYP-NHLIW-AGF---DEMMLPAASLGVDGAI 203 (290)
T ss_pred ccccCcCHHHHHHHhcCCCEEEEEeC--------C--CCHHHHHHHHHhCC-CCEEE-ECc---hHHHHHHHHCCCCEEE
Confidence 4567777777642 1222221 1 12344455554443 45443 442 3556778899999998
Q ss_pred EchHH
Q 018919 287 IGRPV 291 (349)
Q Consensus 287 ig~~~ 291 (349)
.+..-
T Consensus 204 ~~~~n 208 (290)
T TIGR00683 204 GSTFN 208 (290)
T ss_pred ecHHH
Confidence 87754
No 465
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.78 E-value=4.6 Score=37.65 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 216 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 216 ~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
++|+.+.++||++|++- +.+ .+...+|.+.+ .+|+|+-|
T Consensus 164 ~~A~a~e~AGA~~ivlE---------~vp-~~~a~~It~~l--~iP~iGIG 202 (263)
T TIGR00222 164 EDALALEEAGAQLLVLE---------CVP-VELAAKITEAL--AIPVIGIG 202 (263)
T ss_pred HHHHHHHHcCCCEEEEc---------CCc-HHHHHHHHHhC--CCCEEeec
Confidence 56888999999999983 233 37777888877 79998654
No 466
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=93.73 E-value=2.8 Score=37.81 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCeEEecCC----------------CCCCHHHHHhhCCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEE
Q 018919 92 ATARAASAAGTIMTLSSW----------------STSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (349)
Q Consensus 92 ~la~aa~~~G~~~~~~~~----------------~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i 155 (349)
.+...|.++|+++++... ...++.+.++..+...++-+.. . ..+.++++++.|+|.+.+
T Consensus 56 ~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iIG~S~-h----~~eea~~A~~~g~DYv~~ 130 (211)
T COG0352 56 KLRALCQKYGVPLIINDRVDLALAVGADGVHLGQDDMPLAEARELLGPGLIIGLST-H----DLEEALEAEELGADYVGL 130 (211)
T ss_pred HHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcCCcccchHHHHHhcCCCCEEEeec-C----CHHHHHHHHhcCCCEEEE
Confidence 455566777777666432 1123444444433222332211 1 245677888889999875
Q ss_pred ecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 156 ~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
. |. |..+.+ +. .+.. ++.++++++...+|+++=+-.+++.+..+.++|+++|.+.
T Consensus 131 G---pi-----------fpT~tK---~~-----~~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 131 G---PI-----------FPTSTK---PD-----APPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred C---Cc-----------CCCCCC---CC-----CCccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 2 21 111111 00 1223 8889999998889998877789999999999999999885
No 467
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.73 E-value=0.36 Score=48.92 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=130.4
Q ss_pred hhcccccccccccC-CC-CCCCcceeEcCeecCcceeecccccccccCChhhHHHHHHHHHcCCeEEecCCCCCCHHHHH
Q 018919 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (349)
Q Consensus 41 ~~~~~~~l~p~~l~-~~-~~~d~s~~l~g~~~~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~ 118 (349)
.+||++.|+|.... .. +++|++|++ ++.+..||+.|||...+ +..||.+.++.|..+++.. +.+.++..
T Consensus 13 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih~--nl~~~~q~ 83 (479)
T PRK07807 13 LTYDDVFLVPSRSDVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLPQ--DIPIDVVA 83 (479)
T ss_pred cCccceEecccccCccCCCceecccCC-CCccccceeecCCcchh------HHHHHHHHHHCCCceEeeC--CCCHHHHH
Confidence 47999999998763 34 488999974 78899999999997754 7799999999998888763 34454433
Q ss_pred hhCC----CceEE-EEeecCChhHHHHHHHHHHHcCCCEEEEecCCC-CCC-chhHHhhhhc-CCCC-cCcccccCCCCC
Q 018919 119 STGP----GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNRF-TLPP-FLTLKNFQGLDL 189 (349)
Q Consensus 119 ~~~~----~~~~~-Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p-~~g-~r~~d~~~~~-~~p~-~~~~~~~~~~~~ 189 (349)
+... ...+. +...-.......+.++.+.+.+...+.+.-+.- ..| ...+|++..- ..|- .+-.... -...
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~~V~diMt~~~-itV~ 162 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFTQVRDVMSTDL-VTLP 162 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCCCHHHhccCCc-eEEC
Confidence 2211 11110 000001112345566666777776665521110 001 1123332100 0000 0000000 0011
Q ss_pred Cch--HHHHHHHHHh-c-CCcEEEE-----E------------------------------e--cCHHHHHHHHHcCCCE
Q 018919 190 GKM--DEDVKWLQTI-T-KLPILVK-----G------------------------------V--LTAEDARIAVQAGAAG 228 (349)
Q Consensus 190 ~~~--~~~i~~i~~~-~-~~pv~vK-----~------------------------------v--~~~~~a~~a~~~G~d~ 228 (349)
++. .+.++.+.+. . .+||+=. + + ...+.++.+.++|+|.
T Consensus 163 ~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~ 242 (479)
T PRK07807 163 AGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDV 242 (479)
T ss_pred CCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCCE
Confidence 111 2223333221 0 1232210 0 0 1125578889999999
Q ss_pred EEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 229 IIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 229 I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
|++....|. +...++.+.++++..+ +++|| .|.|.|.+.+..++.+|||+|-+|
T Consensus 243 i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~-agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 243 LVVDTAHGH----QEKMLEALRAVRALDP-GVPIV-AGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred EEEeccCCc----cHHHHHHHHHHHHHCC-CCeEE-eeccCCHHHHHHHHHcCCCEEEEC
Confidence 999754332 4456788888888763 56655 578999999999999999998744
No 468
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.68 E-value=0.91 Score=45.70 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHHHcCCCEE-EEecCCCCCCchhHHhhhhcCCCC---cCcccccCCCCCCch-HHHHHHHHHhcC--Cc
Q 018919 134 DRNVVAQLVRRAERAGFKAI-ALTVDTPRLGRREADIKNRFTLPP---FLTLKNFQGLDLGKM-DEDVKWLQTITK--LP 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i-~i~~d~p~~g~r~~d~~~~~~~p~---~~~~~~~~~~~~~~~-~~~i~~i~~~~~--~p 206 (349)
+++...++++.+.+.|.+++ ++|= +.++........ +++.++. .+.+. .+...++....+ ..
T Consensus 144 ~~~~l~~l~~~a~~lGl~~lvEvh~--------~~El~~al~~~a~iiGiNnRdL---~t~~vd~~~~~~l~~~ip~~~~ 212 (454)
T PRK09427 144 DDEQYRQLAAVAHSLNMGVLTEVSN--------EEELERAIALGAKVIGINNRNL---RDLSIDLNRTRELAPLIPADVI 212 (454)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECC--------HHHHHHHHhCCCCEEEEeCCCC---ccceECHHHHHHHHhhCCCCcE
Confidence 34567788889999999987 4431 111221111111 2222332 11222 344455555442 22
Q ss_pred -EEEEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 018919 207 -ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 285 (349)
Q Consensus 207 -v~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V 285 (349)
|.--|+.++++++.+.. |+|++.|... +-..+.....+.++.. ..+.| -||++.+|+..+..+|||++
T Consensus 213 ~vseSGI~t~~d~~~~~~-~~davLiG~~----lm~~~d~~~~~~~L~~---~~vKI---CGit~~eda~~a~~~GaD~l 281 (454)
T PRK09427 213 VISESGIYTHAQVRELSP-FANGFLIGSS----LMAEDDLELAVRKLIL---GENKV---CGLTRPQDAKAAYDAGAVYG 281 (454)
T ss_pred EEEeCCCCCHHHHHHHHh-cCCEEEECHH----HcCCCCHHHHHHHHhc---ccccc---CCCCCHHHHHHHHhCCCCEE
Confidence 33345689999999765 7999988422 1112222333443322 23333 47999999999999999999
Q ss_pred EE
Q 018919 286 FI 287 (349)
Q Consensus 286 ~i 287 (349)
++
T Consensus 282 Gf 283 (454)
T PRK09427 282 GL 283 (454)
T ss_pred ee
Confidence 87
No 469
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=93.67 E-value=3 Score=38.56 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc-CCCc-EEEecCCCC---HHHHHHHHHhCCCEEEEchHHH
Q 018919 218 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIP-VFLDGGVRR---GTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~-~~ip-via~GGI~~---~~dv~kal~~GA~~V~ig~~~l 292 (349)
++...+.|+|.+.|---+. . .| .+-+++....+.-. .++| |+.+.|+.. ...+.-|++.||++|..||+.-
T Consensus 192 ~k~fsd~GadvlKvevPvy--v-eG-e~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtW 267 (306)
T COG3684 192 MKEFSDSGADVLKVEVPVY--V-EG-EQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGRATW 267 (306)
T ss_pred HHHhccCCCceEEeeccee--c-cC-ccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEechhhh
Confidence 4556678999988743210 0 11 23333333322211 1566 677888876 3456668889999999999865
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 018919 293 YSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 332 (349)
Q Consensus 293 ~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 332 (349)
.+....|. ...+.++.-.|+.+|.+|++.
T Consensus 268 a~~v~~g~-----------d~~re~Lrt~g~~ni~eL~~v 296 (306)
T COG3684 268 AGVVEQGE-----------DAAREWLRTVGFPNLDELNKV 296 (306)
T ss_pred hcccccCc-----------HHHHHHHHhhccccHHHHHHH
Confidence 43333344 345667778888898888753
No 470
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=93.66 E-value=2.2 Score=38.39 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCeEEe-cCCCCCCHHHHHhh------CCCceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018919 92 ATARAASAAGTIMTL-SSWSTSSVEEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (349)
Q Consensus 92 ~la~aa~~~G~~~~~-~~~~~~~~e~i~~~------~~~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~ 164 (349)
-.++.|.++|.-.+. +.. .+.+.+.++ ......+-+|...|++ +..+.+++.|.+.+.+|.+--
T Consensus 71 ~e~~ma~~aGAd~~tV~g~--A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~---~~~~~l~~~gvd~~~~H~g~D---- 141 (217)
T COG0269 71 IEARMAFEAGADWVTVLGA--ADDATIKKAIKVAKEYGKEVQIDLIGVWDPE---QRAKWLKELGVDQVILHRGRD---- 141 (217)
T ss_pred HHHHHHHHcCCCEEEEEec--CCHHHHHHHHHHHHHcCCeEEEEeecCCCHH---HHHHHHHHhCCCEEEEEeccc----
Confidence 567888888877542 222 233333222 1223344556555554 455566679999999987532
Q ss_pred hhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcC--CcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 165 READIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 165 r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~--~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+. ...+. |+++..+++..+ .++.|-|-.+++++..+.+.|++.+++.
T Consensus 142 ----~q~----------------~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvG 192 (217)
T COG0269 142 ----AQA----------------AGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVG 192 (217)
T ss_pred ----Hhh----------------cCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEEC
Confidence 110 01223 577888877764 6888888899999999999999999983
No 471
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=93.65 E-value=1 Score=43.64 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v 212 (349)
+.+...+.++.+++.|++.+.++..... +. ...+ ++..+++|+.+++||++-+-
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~--------------~~-----------~~~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVA--------------GN-----------PEDQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCC--------------Cc-----------ccccchHHHHHHHHHcCCCEEEECC
Confidence 3455678888999999998877543211 00 0123 78899999999999988776
Q ss_pred cCHHHHHHHHHcC-CCEEEE
Q 018919 213 LTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 213 ~~~~~a~~a~~~G-~d~I~v 231 (349)
.++++++.+++.| +|.|.+
T Consensus 294 i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 294 YDAESAEAALADGKADLVAF 313 (338)
T ss_pred CCHHHHHHHHHcCCCCEEEe
Confidence 6799999999876 999977
No 472
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=93.64 E-value=1.3 Score=39.09 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCcEE-EEEecCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHH
Q 018919 194 EDVKWLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 255 (349)
Q Consensus 194 ~~i~~i~~~~~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~ 255 (349)
..++|+|+++..+.+ +-+-.+++.+.++.++||+.|+.... ..+....-+.+..+++.
T Consensus 158 ~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsa----vf~a~d~~~vi~~lr~~ 216 (224)
T KOG3111|consen 158 PKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSA----VFGAADPSDVISLLRNS 216 (224)
T ss_pred HHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecce----eecCCCHHHHHHHHHHH
Confidence 469999998865544 66678899999999999999976321 11222334555555544
No 473
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=93.62 E-value=1.4 Score=42.26 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=60.2
Q ss_pred CceEEEEeec---CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH
Q 018919 123 GIRFFQLYVY---KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL 199 (349)
Q Consensus 123 ~~~~~Ql~~~---~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i 199 (349)
.|..+|--.+ .|.+.+.+.+++++++|++.+-+++.. .+..+.+++|
T Consensus 18 ~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~------------------------------~~~A~al~~I 67 (346)
T TIGR00612 18 APIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPD------------------------------RESAAAFEAI 67 (346)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCC------------------------------HHHHHhHHHH
Confidence 3455665433 355677888999999999998766532 1114568999
Q ss_pred HHhcCCcEEEEEecCHHHHHHHHHcCCCEEEE
Q 018919 200 QTITKLPILVKGVLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 200 ~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v 231 (349)
++.+++|++.=+=.++..|..+.+.|+|.|-+
T Consensus 68 ~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRI 99 (346)
T TIGR00612 68 KEGTNVPLVADIHFDYRLAALAMAKGVAKVRI 99 (346)
T ss_pred HhCCCCCEEEeeCCCcHHHHHHHHhccCeEEE
Confidence 99999999986557888999999999999998
No 474
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=93.60 E-value=1.6 Score=42.04 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=108.2
Q ss_pred CChhhHHHHHHHHHcC-CeEEecCCCC---CCHHHHHhhCC---CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecC
Q 018919 86 HPEGEYATARAASAAG-TIMTLSSWST---SSVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (349)
Q Consensus 86 ~~~~~~~la~aa~~~G-~~~~~~~~~~---~~~e~i~~~~~---~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d 158 (349)
.++.-...|+.|.+.| ..+++.+.+- ..++++.+... ......++..-. ..+.+.++++.++|++...-|++
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG-~l~~eq~~~L~~aGvd~ynhNLe 163 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG-MLTEEQAEKLADAGVDRYNHNLE 163 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC-CCCHHHHHHHHHcChhheecccc
Confidence 4444568999999999 7777654432 34454433211 011122222111 34467888999999999998888
Q ss_pred CCCCCchhHHhhhhcCCCCcCcccccCCCCCCch---HHHHHHHHHhcCCcEEEEEe----cCH----HHHHHHHHcC-C
Q 018919 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM---DEDVKWLQTITKLPILVKGV----LTA----EDARIAVQAG-A 226 (349)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~pv~vK~v----~~~----~~a~~a~~~G-~ 226 (349)
+.. +-|. . + .....+ ++.++.+|+ .++.+...++ -+. +.+..+.+.. +
T Consensus 164 Ts~---------~~y~--~-I-------~tt~t~edR~~tl~~vk~-~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 164 TSP---------EFYE--N-I-------ITTRTYEDRLNTLENVRE-AGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred cCH---------HHHc--c-c-------CCCCCHHHHHHHHHHHHH-cCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 721 1111 0 0 001112 455777776 4777666665 344 4467778888 9
Q ss_pred CEEEEec---CCCCCCCC--chhhHHHHHHHHHH--hcCCCcEEEecCCCCHHH--HHHHHHhCCCEEEEchHHH
Q 018919 227 AGIIVSN---HGARQLDY--VPATIMALEEVVKA--TQGRIPVFLDGGVRRGTD--VFKALALGASGIFIGRPVV 292 (349)
Q Consensus 227 d~I~v~~---~gg~~~~~--~~~~~~~l~~i~~~--~~~~ipvia~GGI~~~~d--v~kal~~GA~~V~ig~~~l 292 (349)
|.|-+-. +-|+.+.. ..+.++.++-|+-+ .-.+.-|.++||.-+-.+ ...++.+||+.+++|--++
T Consensus 224 dsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~l 298 (335)
T COG0502 224 DSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYL 298 (335)
T ss_pred CeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEe
Confidence 9888742 35554432 23456666655432 223566777777654433 4567778999999997333
No 475
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=93.53 E-value=1.4 Score=42.08 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=61.4
Q ss_pred CceEEEEeec---CChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH
Q 018919 123 GIRFFQLYVY---KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL 199 (349)
Q Consensus 123 ~~~~~Ql~~~---~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i 199 (349)
.|..+|--.+ .|.+.+.+.+++++++|++.+-++++.. +-.+.+++|
T Consensus 20 aPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~------------------------------e~A~A~~~I 69 (361)
T COG0821 20 APIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDM------------------------------EAAEALKEI 69 (361)
T ss_pred CceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCH------------------------------HHHHHHHHH
Confidence 3456675443 3566788899999999999987776421 114669999
Q ss_pred HHhcCCcEEEEEecCHHHHHHHHHcCCCEEEE
Q 018919 200 QTITKLPILVKGVLTAEDARIAVQAGAAGIIV 231 (349)
Q Consensus 200 ~~~~~~pv~vK~v~~~~~a~~a~~~G~d~I~v 231 (349)
+++.++|++.-.=.++..|..+.+.|+|.+-+
T Consensus 70 k~~~~vPLVaDiHf~~rla~~~~~~g~~k~RI 101 (361)
T COG0821 70 KQRLNVPLVADIHFDYRLALEAAECGVDKVRI 101 (361)
T ss_pred HHhCCCCEEEEeeccHHHHHHhhhcCcceEEE
Confidence 99999999986657789999999999999988
No 476
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=93.49 E-value=6 Score=37.86 Aligned_cols=242 Identities=18% Similarity=0.200 Sum_probs=124.3
Q ss_pred eeEcCeec---CcceeecccccccccCChhhHHHHHHHHHcCCeEE-ecCCCCCCHHHHHhh-C--C--------CceEE
Q 018919 63 TTVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEVAST-G--P--------GIRFF 127 (349)
Q Consensus 63 ~~l~g~~~---~~Pi~iApm~~~~l~~~~~~~~la~aa~~~G~~~~-~~~~~~~~~e~i~~~-~--~--------~~~~~ 127 (349)
.+++|+.+ ..|++||=+|...-.+-+.-.+|.++|+++|+..+ +-++. +.+.+... . + +...+
T Consensus 2 ~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKfQt~~--~~d~~t~~~~~~~~~i~~~~~~~sly 79 (347)
T COG2089 2 IKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKFQTFY--TPDIMTLESKNVPFKIKTLWDKVSLY 79 (347)
T ss_pred eeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeeeeccc--ccccccccccCCccccccccccccHH
Confidence 35666655 46999999876332122223478899999999876 32221 11222111 1 1 11123
Q ss_pred EEee--cCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch--HHHHHHHHHhc
Q 018919 128 QLYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM--DEDVKWLQTIT 203 (349)
Q Consensus 128 Ql~~--~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~--~~~i~~i~~~~ 203 (349)
|+|- .-+.++..++.+.+++.|.-. +.+|. ..+..|+-+.+..|. . + .-+.+. ...|+.+.+.
T Consensus 80 el~e~~~~p~e~~~~Lke~a~~~Gi~~----~SSPf-d~~svd~l~~~~~~a-y--K----IaS~E~~~~plik~iA~~- 146 (347)
T COG2089 80 ELYEEAETPLEWHAQLKEYARKRGIIF----FSSPF-DLTAVDLLESLNPPA-Y--K----IASGEINDLPLIKYIAKK- 146 (347)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCeEE----EecCC-CHHHHHHHHhcCCCe-E--E----ecCccccChHHHHHHHhc-
Confidence 3333 124566667777888877433 34553 344445555554331 0 0 012222 4667777764
Q ss_pred CCcEEEEEe-cCHHHH----HHHHHcCCC-EEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 018919 204 KLPILVKGV-LTAEDA----RIAVQAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 277 (349)
Q Consensus 204 ~~pv~vK~v-~~~~~a----~~a~~~G~d-~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ka 277 (349)
+.|+++-.- .+.++. ..+.+.|.. .+.++....+.-......+..++.+++.+ +++|=.+.-=..-.-.+.|
T Consensus 147 ~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F--n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 147 GKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF--NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh--CCccccccCccchhHHHHH
Confidence 779887543 444443 446678876 44443322211111123456677777776 5555544422222333467
Q ss_pred HHhCCCEEEEchHHHHHHhhcCHHHH----HHHHHHHHHHHHHHHHHcCC
Q 018919 278 LALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGC 323 (349)
Q Consensus 278 l~~GA~~V~ig~~~l~~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~ 323 (349)
.++||.. |-+-|.-.....|++.. -+-++.+.+.++..-..+|.
T Consensus 225 vALGA~v--iEKHFtldk~~~GpD~~fSldP~efk~mv~~ir~~~~alG~ 272 (347)
T COG2089 225 VALGASV--IEKHFTLDKSREGPDHAFSLDPDEFKEMVDAIRQVEKALGD 272 (347)
T ss_pred HHhcccc--eeeeeeecCCCCCCCcceecCHHHHHHHHHHHHHHHHHhCC
Confidence 8899864 45666533333444221 12245666666666666664
No 477
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=93.46 E-value=6 Score=36.10 Aligned_cols=123 Identities=17% Similarity=0.230 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc-h-HHHHHHHHHhcCCcEEEEEecCHH
Q 018919 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK-M-DEDVKWLQTITKLPILVKGVLTAE 216 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~pv~vK~v~~~~ 216 (349)
.+.+..++++|+++|.+|+-- |.. . .+++..+++..+.|+-+-+..+.|
T Consensus 24 v~aA~~a~~aGAdgITvHlRe-----------------------------DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e 74 (234)
T cd00003 24 VEAALLAEKAGADGITVHLRE-----------------------------DRRHIQDRDVRLLRELVRTELNLEMAPTEE 74 (234)
T ss_pred HHHHHHHHHcCCCEEEecCCC-----------------------------CcCcCCHHHHHHHHHHcCCCEEeccCCCHH
Confidence 467788899999999988732 222 2 467999998888899888888999
Q ss_pred HHHHHHHcCCCEEEEecCCCCCC--CCc---hhhHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 217 DARIAVQAGAAGIIVSNHGARQL--DYV---PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 217 ~a~~a~~~G~d~I~v~~~gg~~~--~~~---~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
....+.+.-.+.+++-.-..-++ ++| ....+.|.++.+.++ -++.++.+-. .+++..+...||+.|=+-
T Consensus 75 m~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd---~~qi~~A~~~GAd~VELh 151 (234)
T cd00003 75 MLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD---PEQIEAAKEVGADRVELH 151 (234)
T ss_pred HHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCEEEEe
Confidence 99999999999999864221111 122 123455555555443 2577888764 788888889999999999
Q ss_pred hHHHH
Q 018919 289 RPVVY 293 (349)
Q Consensus 289 ~~~l~ 293 (349)
+--+.
T Consensus 152 TG~Ya 156 (234)
T cd00003 152 TGPYA 156 (234)
T ss_pred chhhh
Confidence 86553
No 478
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=93.41 E-value=2.3 Score=44.28 Aligned_cols=188 Identities=16% Similarity=0.114 Sum_probs=103.8
Q ss_pred CChHHHHHHHHHhCCccccccc-cCCCcchHHHHH-HHhhcccccccccccCCCCCCCcceeEcCeecCcceeecccccc
Q 018919 5 TNVMEYEAIAKEKLPKMVFDYY-ASGAEDQWTLQE-NRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (349)
Q Consensus 5 ~~~~d~~~~a~~~l~~~~~~y~-~~g~~~~~t~~~-n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~~ 82 (349)
++.+|+...|..-=....|..= .||+.=...++- +-+.|++++..-+.++ +..+++=+-|..+ | |+.
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~p---nt~lqmL~Rg~N~--v------Gy~ 91 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALP---NTQLSMLLRGQNL--L------GYR 91 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCC---CCceEEEeccccc--c------ccc
Confidence 3456666665543332233222 334433333222 3455666665544443 2333333334432 1 221
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCCCC--------CHHHHHhhCCCceEEEE---ee---cCChhHHHHHHHHHHHc
Q 018919 83 KMAHPEGEYATARAASAAGTIMTLSSWSTS--------SVEEVASTGPGIRFFQL---YV---YKDRNVVAQLVRRAERA 148 (349)
Q Consensus 83 ~l~~~~~~~~la~aa~~~G~~~~~~~~~~~--------~~e~i~~~~~~~~~~Ql---~~---~~~~~~~~~~~~~~~~~ 148 (349)
. +..+.-..+.+.+.+.|+..+ ..+.++ +++.+++... .+|. |. ..+.+...+.++++.++
T Consensus 92 ~-~~d~vv~~~v~~a~~~Gidv~-Rifd~lnd~~n~~~~i~~~k~~G~---~~~~~i~yt~sp~~t~e~~~~~ak~l~~~ 166 (596)
T PRK14042 92 N-YADDVVRAFVKLAVNNGVDVF-RVFDALNDARNLKVAIDAIKSHKK---HAQGAICYTTSPVHTLDNFLELGKKLAEM 166 (596)
T ss_pred c-CChHHHHHHHHHHHHcCCCEE-EEcccCcchHHHHHHHHHHHHcCC---EEEEEEEecCCCCCCHHHHHHHHHHHHHc
Confidence 1 222344568899999998854 323221 2233333321 1221 22 24667788899999999
Q ss_pred CCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec----CHHHHHHHHH
Q 018919 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL----TAEDARIAVQ 223 (349)
Q Consensus 149 G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~----~~~~a~~a~~ 223 (349)
|++.|.| -|+. |...|.. .+.++.+++.+++||-+-.=. .......|++
T Consensus 167 Gad~I~I-kDta-------------------------G~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAie 220 (596)
T PRK14042 167 GCDSIAI-KDMA-------------------------GLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVL 220 (596)
T ss_pred CCCEEEe-CCcc-------------------------cCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHH
Confidence 9998775 2332 1234555 677999999889888766532 3455688999
Q ss_pred cCCCEEEEecC
Q 018919 224 AGAAGIIVSNH 234 (349)
Q Consensus 224 ~G~d~I~v~~~ 234 (349)
+|||.|..+-.
T Consensus 221 aGad~iD~ai~ 231 (596)
T PRK14042 221 AGCNHIDTAIS 231 (596)
T ss_pred hCCCEEEeccc
Confidence 99999998744
No 479
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=93.37 E-value=2.9 Score=38.09 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=55.3
Q ss_pred HHHHHHHHhc--CCcEEEEEe---cCHHH----HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc---CCCc
Q 018919 194 EDVKWLQTIT--KLPILVKGV---LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIP 261 (349)
Q Consensus 194 ~~i~~i~~~~--~~pv~vK~v---~~~~~----a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ip 261 (349)
..|+++++.. ..|+....- ..+.. +..+...|+|+|.+.-+|... .....+.+..+.++++ .+..
T Consensus 40 ~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~---~~~a~e~l~~v~~av~~~~~~~~ 116 (235)
T PF04476_consen 40 WVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKD---YDEAIEALEAVVRAVKDFDPDKK 116 (235)
T ss_pred HHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCC---HHHHHHHHHHHHHHHhhhCCCcE
Confidence 4455666555 378876542 22322 344567899999997654422 1223455555544442 2445
Q ss_pred EEEecCC-------CCHHHHHHHHH-hCCCEEEEchHH
Q 018919 262 VFLDGGV-------RRGTDVFKALA-LGASGIFIGRPV 291 (349)
Q Consensus 262 via~GGI-------~~~~dv~kal~-~GA~~V~ig~~~ 291 (349)
+++.+=- -++.++.+..+ +|+++||+-|+.
T Consensus 117 vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~ 154 (235)
T PF04476_consen 117 VVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTAD 154 (235)
T ss_pred EEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 5555422 24567776654 899999998854
No 480
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=93.33 E-value=0.042 Score=47.91 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=68.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCC-CCchh---HHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPR-LGRRE---ADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILV 209 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~-~g~r~---~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v 209 (349)
+.....+.++++.++|= .+.+|+|.-. .+..+ +-+.+.+ -|+|+-.. ....++..++ .++.-+-
T Consensus 29 ~I~~l~~~v~~~~~~gK-~vfVHiDli~Gl~~D~~~i~~L~~~~-~~dGIIST---------k~~~i~~Ak~-~gl~tIq 96 (175)
T PF04309_consen 29 DIGNLKDIVKRLKAAGK-KVFVHIDLIEGLSRDEAGIEYLKEYG-KPDGIIST---------KSNLIKRAKK-LGLLTIQ 96 (175)
T ss_dssp ECCCHHHHHHHHHHTT--EEEEECCGEETB-SSHHHHHHHHHTT---SEEEES---------SHHHHHHHHH-TT-EEEE
T ss_pred cHHHHHHHHHHHHHcCC-EEEEEehhcCCCCCCHHHHHHHHHcC-CCcEEEeC---------CHHHHHHHHH-cCCEEEE
Confidence 44556778888888874 4467887421 00000 1111100 01111000 0234555554 3555444
Q ss_pred EEe----cCHHH-HHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCE
Q 018919 210 KGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 284 (349)
Q Consensus 210 K~v----~~~~~-a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~ 284 (349)
+.. .+.+. .+.+.+..+|+|-+- .+- ....+.++.+.+ ++|||+.|=|++.+|+.++|+.||++
T Consensus 97 RiFliDS~al~~~~~~i~~~~PD~vEil-------Pg~--~p~vi~~i~~~~--~~PiIAGGLI~~~e~v~~al~aGa~a 165 (175)
T PF04309_consen 97 RIFLIDSSALETGIKQIEQSKPDAVEIL-------PGV--MPKVIKKIREET--NIPIIAGGLIRTKEDVEEALKAGADA 165 (175)
T ss_dssp EEE-SSHHHHHHHHHHHHHHT-SEEEEE-------SCC--HHHHHCCCCCCC--SS-EEEESS--SHHHHHHHCCTTCEE
T ss_pred EeeeecHHHHHHHHHHHhhcCCCEEEEc-------hHH--HHHHHHHHHHhc--CCCEEeecccCCHHHHHHHHHcCCEE
Confidence 442 22333 344556778887762 111 112333333333 69999999999999999999999999
Q ss_pred EEEchHHHH
Q 018919 285 IFIGRPVVY 293 (349)
Q Consensus 285 V~ig~~~l~ 293 (349)
|.-..+-+|
T Consensus 166 VSTS~~~LW 174 (175)
T PF04309_consen 166 VSTSNKELW 174 (175)
T ss_dssp EEE--HHHC
T ss_pred EEcCChHhc
Confidence 998877665
No 481
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.32 E-value=1.7 Score=41.90 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCC-Cch-HHHHHHHHHhcCCcEEEEE
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL-GKM-DEDVKWLQTITKLPILVKG 211 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~-~~~-~~~i~~i~~~~~~pv~vK~ 211 (349)
+.+...+.++.+++.|++.+.++...... |....... ..... +.+ ++..+++|+.+++||++-+
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~g~~~~-------------~~~~~~~~-~~~~~~~~~~~~~~~~ik~~v~iPVi~~G 299 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSGGTYES-------------PAMAGAKK-ESTIAREAYFLEFAEKIRKVTKTPLMVTG 299 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCC-------------cccccccc-CCccccchhhHHHHHHHHHHcCCCEEEeC
Confidence 55667788899999999999887653210 00000000 00011 223 5778899999999998766
Q ss_pred e-cCHHHHHHHHHcC-CCEEEE
Q 018919 212 V-LTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 212 v-~~~~~a~~a~~~G-~d~I~v 231 (349)
. .++++++.+++.| +|.|-+
T Consensus 300 ~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 300 GFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred CCCCHHHHHHHHHcCCCCeeee
Confidence 4 5899999999887 898876
No 482
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=93.28 E-value=1.7 Score=42.05 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEE-
Q 018919 135 RNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKG- 211 (349)
Q Consensus 135 ~~~~~~~~~~~~~~G-~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~- 211 (349)
.+...++++.++++| ++.+.|+...... .+ ......+. . ...+.+ |+.++++++.+++||++-+
T Consensus 227 ~~e~~~~~~~l~~~G~vd~i~vs~g~~~~-~~----~~~~~~~~-----~---~~~~~~~~~~~~~ik~~~~ipvi~~G~ 293 (343)
T cd04734 227 PDEALEIAARLAAEGLIDYVNVSAGSYYT-LL----GLAHVVPS-----M---GMPPGPFLPLAARIKQAVDLPVFHAGR 293 (343)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeCCCCCCc-cc----ccccccCC-----C---CCCcchhHHHHHHHHHHcCCCEEeeCC
Confidence 456678889999998 8998876543210 00 00000010 0 012233 7888999999999988766
Q ss_pred ecCHHHHHHHHHcC-CCEEEE
Q 018919 212 VLTAEDARIAVQAG-AAGIIV 231 (349)
Q Consensus 212 v~~~~~a~~a~~~G-~d~I~v 231 (349)
+.++++++.+++.| +|+|.+
T Consensus 294 i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 294 IRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred CCCHHHHHHHHHcCCCCeeee
Confidence 57899999999866 999977
No 483
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=93.25 E-value=1.2 Score=42.78 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=62.6
Q ss_pred CCchHHHHHHHHHhcC-CcEEEEEe--c----CHHHHHHHHH-cCCCEEEEecCCCC--CCCCchhhH----HHHHHHHH
Q 018919 189 LGKMDEDVKWLQTITK-LPILVKGV--L----TAEDARIAVQ-AGAAGIIVSNHGAR--QLDYVPATI----MALEEVVK 254 (349)
Q Consensus 189 ~~~~~~~i~~i~~~~~-~pv~vK~v--~----~~~~a~~a~~-~G~d~I~v~~~gg~--~~~~~~~~~----~~l~~i~~ 254 (349)
+++.++.++.+|+..+ .|+++-.- . +++++..+.+ .++|++-+.-.... ....+...+ +.+..+++
T Consensus 96 ~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~ 175 (326)
T cd02811 96 DPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVK 175 (326)
T ss_pred ChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 4555677888888775 88776442 1 5666665554 88999988421110 011122233 55666666
Q ss_pred HhcCCCcEEEe--cCCCCHHHHHHHHHhCCCEEEEch
Q 018919 255 ATQGRIPVFLD--GGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 255 ~~~~~ipvia~--GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
.+ ++||++= |--.+.+++.++...|+|++.++.
T Consensus 176 ~~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 176 AL--SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred hc--CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 65 7899983 333677778777779999999864
No 484
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.23 E-value=3.7 Score=37.87 Aligned_cols=68 Identities=16% Similarity=0.079 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEecC-----
Q 018919 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVLT----- 214 (349)
Q Consensus 140 ~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~~----- 214 (349)
+-+..+++.|++-|++.-+-... | ..|. ...++.+++..++||.+-+.+.
T Consensus 12 ~~a~~A~~~GAdRiELc~~L~~G---------------G---------lTPS-~g~i~~~~~~~~ipv~vMIRPR~gdF~ 66 (248)
T PRK11572 12 ECALTAQQAGADRIELCAAPKEG---------------G---------LTPS-LGVLKSVRERVTIPVHPIIRPRGGDFC 66 (248)
T ss_pred HHHHHHHHcCCCEEEEccCcCCC---------------C---------cCCC-HHHHHHHHHhcCCCeEEEEecCCCCCC
Confidence 34667889999999985443211 1 1222 3567777888899998876532
Q ss_pred ---------HHHHHHHHHcCCCEEEEe
Q 018919 215 ---------AEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 215 ---------~~~a~~a~~~G~d~I~v~ 232 (349)
.++++.+.++|+|+|++.
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G 93 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTG 93 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 256888999999999984
No 485
>PLN02411 12-oxophytodienoate reductase
Probab=93.19 E-value=7.7 Score=38.35 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=46.6
Q ss_pred ceeEcCeecCcceeeccccccccc--CC-hhhHHHHHHHHHcCCeEEecCCCCCCHHHHHhhCCCceEEEEeecCChhHH
Q 018919 62 NTTVLGFKISMPIMIAPTAMQKMA--HP-EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVV 138 (349)
Q Consensus 62 s~~l~g~~~~~Pi~iApm~~~~l~--~~-~~~~~la~aa~~~G~~~~~~~~~~~~~e~i~~~~~~~~~~Ql~~~~~~~~~ 138 (349)
..+|.++++++-|+.|||+...-. .| +.....-+.-++.| .+++++....+.+ ....+ ....+|.....+.+
T Consensus 15 P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~--g~~~~--~~~gi~~d~~i~~~ 89 (391)
T PLN02411 15 PYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPT--APGFP--HVPGIYSDEQVEAW 89 (391)
T ss_pred CeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcc--cCcCC--CCCccCCHHHHHHH
Confidence 577888999999999999643211 11 12234333333445 6666554322211 01111 11123322222345
Q ss_pred HHHHHHHHHcCCCEEEEecCC
Q 018919 139 AQLVRRAERAGFKAIALTVDT 159 (349)
Q Consensus 139 ~~~~~~~~~~G~~~i~i~~d~ 159 (349)
.++++.+.+.|++.+ +-+.+
T Consensus 90 ~~l~~avH~~G~~i~-~QL~H 109 (391)
T PLN02411 90 KKVVDAVHAKGSIIF-CQLWH 109 (391)
T ss_pred HHHHHHHHhcCCEEE-EeccC
Confidence 667777778888763 33433
No 486
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=92.99 E-value=1.2 Score=43.78 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEch
Q 018919 245 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 289 (349)
Q Consensus 245 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~ 289 (349)
+|+.+.++++.. ++||++- ||.+.+|+.+++.+|+|+|.|..
T Consensus 241 tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 241 TWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 567787787766 6898876 68999999999999999999863
No 487
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.98 E-value=1.1 Score=43.00 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=49.4
Q ss_pred HHHHHHHH--cCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 018919 216 EDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 288 (349)
Q Consensus 216 ~~a~~a~~--~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig 288 (349)
+-+..+.+ +|+|.|++...-|+ ....++.+.++++.++ +++| ..|.|-|++-+...+.+|||+|=||
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~v-IaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTI-CAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 55677777 59999999753231 2335678888888764 5664 4688999999988888999998654
No 488
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=92.94 E-value=4.3 Score=41.00 Aligned_cols=187 Identities=18% Similarity=0.169 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHhCCcccccccc--CCCcchHHHH-HHHhhcccccccccccCCCCCCCcceeEcCeecCcceeeccccc
Q 018919 5 TNVMEYEAIAKEKLPKMVFDYYA--SGAEDQWTLQ-ENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (349)
Q Consensus 5 ~~~~d~~~~a~~~l~~~~~~y~~--~g~~~~~t~~-~n~~~~~~~~l~p~~l~~~~~~d~s~~l~g~~~~~Pi~iApm~~ 81 (349)
.+.+|+...|..- .+.-|..+. |||.=...++ .+-+.|++++..-+.+.+ ..+++=+.|..+ .+.
T Consensus 32 ~~t~d~l~ia~~l-d~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~n---t~lqmLlRG~n~--------vgy 99 (468)
T PRK12581 32 LSIEDMLPVLTIL-DKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPN---TRLQMLLRGQNL--------LGY 99 (468)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCC---Cceeeeeccccc--------cCc
Confidence 4556666655432 222333332 3443222222 345567777665555432 222222223221 111
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCCCC-CHH-------HHHhhCCCceEEEE---ee---cCChhHHHHHHHHHHH
Q 018919 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTS-SVE-------EVASTGPGIRFFQL---YV---YKDRNVVAQLVRRAER 147 (349)
Q Consensus 82 ~~l~~~~~~~~la~aa~~~G~~~~~~~~~~~-~~e-------~i~~~~~~~~~~Ql---~~---~~~~~~~~~~~~~~~~ 147 (349)
. -+..+....+.+.|.+.|+..+ ..+... .++ .+++... .+|+ |. ..+.+...+.++++++
T Consensus 100 ~-~ypddvv~~fv~~a~~~Gidi~-Rifd~lnd~~n~~~ai~~ak~~G~---~~~~~i~yt~sp~~t~~y~~~~a~~l~~ 174 (468)
T PRK12581 100 R-HYADDIVDKFISLSAQNGIDVF-RIFDALNDPRNIQQALRAVKKTGK---EAQLCIAYTTSPVHTLNYYLSLVKELVE 174 (468)
T ss_pred c-CCcchHHHHHHHHHHHCCCCEE-EEcccCCCHHHHHHHHHHHHHcCC---EEEEEEEEEeCCcCcHHHHHHHHHHHHH
Confidence 1 1122445678999999998864 222222 122 2222211 1222 21 2245667888999999
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhcCCcEEEEEec----CHHHHHHHH
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTITKLPILVKGVL----TAEDARIAV 222 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK~v~----~~~~a~~a~ 222 (349)
+|++.|.| .|+. |...|.. .+.++.+++..++||.+-.=. .......|+
T Consensus 175 ~Gad~I~I-kDta-------------------------G~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAi 228 (468)
T PRK12581 175 MGADSICI-KDMA-------------------------GILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAV 228 (468)
T ss_pred cCCCEEEE-CCCC-------------------------CCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHH
Confidence 99998876 3432 1234554 577999988778888766532 346678899
Q ss_pred HcCCCEEEEecC
Q 018919 223 QAGAAGIIVSNH 234 (349)
Q Consensus 223 ~~G~d~I~v~~~ 234 (349)
++|||.|..+-.
T Consensus 229 eAGad~vD~ai~ 240 (468)
T PRK12581 229 EAGADRIDTALS 240 (468)
T ss_pred HcCCCEEEeecc
Confidence 999999998754
No 489
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=92.93 E-value=3.1 Score=36.84 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcC-CcEEEEEecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~-~pv~vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
++.++++++..+ +||++=+-.+.+++..+.++|+|+|.+.
T Consensus 148 ~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 148 LEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVV 188 (212)
T ss_pred HHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 688999988876 9998877678999999999999999985
No 490
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=92.92 E-value=7.4 Score=35.72 Aligned_cols=172 Identities=22% Similarity=0.207 Sum_probs=95.8
Q ss_pred hHHHHHHHHHcCCeEEecCC------------CCCCHHHHHhh-------CCCceEEEE---eecCChhHHHHHHHHHHH
Q 018919 90 EYATARAASAAGTIMTLSSW------------STSSVEEVAST-------GPGIRFFQL---YVYKDRNVVAQLVRRAER 147 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~~~~------------~~~~~e~i~~~-------~~~~~~~Ql---~~~~~~~~~~~~~~~~~~ 147 (349)
|...|+.+.+.|...+..+. ...+++|+... ..-|..+-+ |+ .++..+.+.++++++
T Consensus 18 D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG-~~~~~v~~tv~~~~~ 96 (238)
T PF13714_consen 18 DALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYG-NDPENVARTVRELER 96 (238)
T ss_dssp SHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSS-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccC-chhHHHHHHHHHHHH
Confidence 34788999999988765322 11345554322 222333332 32 237778899999999
Q ss_pred cCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCch-HHHHHHHHHhc---CCcEEEEEe-cC-----HH-
Q 018919 148 AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEDVKWLQTIT---KLPILVKGV-LT-----AE- 216 (349)
Q Consensus 148 ~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~-~~~i~~i~~~~---~~pv~vK~v-~~-----~~- 216 (349)
+|+.++.|. |. ..+ ..-+ .+.+.+. .+.|+..++.. +.-|+...= .. .+
T Consensus 97 aG~agi~IE-Dq-~~~---------~~~~---------~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~de 156 (238)
T PF13714_consen 97 AGAAGINIE-DQ-RCG---------HGGK---------QLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDE 156 (238)
T ss_dssp CT-SEEEEE-SB-STT---------TSTT----------B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHH
T ss_pred cCCcEEEee-cc-ccC---------CCCC---------ceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHH
Confidence 999998663 32 000 0000 0122222 45566665543 322333321 11 12
Q ss_pred ---HHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHHH
Q 018919 217 ---DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 293 (349)
Q Consensus 217 ---~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l~ 293 (349)
-++...++|||.|.+- ++.+.+.+.++.+.+ +.|+.+.-+ ...-++.+.-.+|.+.|..|..++.
T Consensus 157 aI~R~~aY~eAGAD~ifi~---------~~~~~~~i~~~~~~~--~~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 157 AIERAKAYAEAGADMIFIP---------GLQSEEEIERIVKAV--DGPLNVNPG-PGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp HHHHHHHHHHTT-SEEEET---------TSSSHHHHHHHHHHH--SSEEEEETT-SSSS-HHHHHHTTESEEEETSHHHH
T ss_pred HHHHHHHHHHcCCCEEEeC---------CCCCHHHHHHHHHhc--CCCEEEEcC-CCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 2566789999999882 233456688888888 577776664 2225666666799999999998876
Q ss_pred H
Q 018919 294 S 294 (349)
Q Consensus 294 ~ 294 (349)
+
T Consensus 225 a 225 (238)
T PF13714_consen 225 A 225 (238)
T ss_dssp H
T ss_pred H
Confidence 4
No 491
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=92.92 E-value=6.9 Score=36.40 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=73.3
Q ss_pred hHHHHHHHHHcCCeEEe-cCC-----------CCCCHHHHH-------hhCCCceE-EEE-eec--CChhHHHHHHHHH-
Q 018919 90 EYATARAASAAGTIMTL-SSW-----------STSSVEEVA-------STGPGIRF-FQL-YVY--KDRNVVAQLVRRA- 145 (349)
Q Consensus 90 ~~~la~aa~~~G~~~~~-~~~-----------~~~~~e~i~-------~~~~~~~~-~Ql-~~~--~~~~~~~~~~~~~- 145 (349)
|..+|+.+.++|+..++ +.. .+.+++++. +..+..+. .-+ |.. .+++...+.+.++
T Consensus 25 D~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~rl~ 104 (261)
T PF02548_consen 25 DYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAGRLM 104 (261)
T ss_dssp SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHHHHH
Confidence 56899999999999875 311 124566643 33343322 222 111 3445444444444
Q ss_pred HHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEEec------------
Q 018919 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKGVL------------ 213 (349)
Q Consensus 146 ~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~v~------------ 213 (349)
+++|++++-+--.. +..+.|+.|.+. ++||+--+-.
T Consensus 105 ke~GadaVKlEGg~-------------------------------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGyr 152 (261)
T PF02548_consen 105 KEAGADAVKLEGGA-------------------------------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLGGYR 152 (261)
T ss_dssp HTTT-SEEEEEBSG-------------------------------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS-
T ss_pred HhcCCCEEEeccch-------------------------------hHHHHHHHHHHC-CCcEEEEecCchhheeccCCce
Confidence 55999997653210 114668888764 8999865521
Q ss_pred ----C-------HHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEec
Q 018919 214 ----T-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 266 (349)
Q Consensus 214 ----~-------~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 266 (349)
+ .++|+.+.++||-+|++-.- +.+.-..|.+.+ ++|+|.-|
T Consensus 153 ~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~v----------p~~la~~It~~l--~IPtIGIG 204 (261)
T PF02548_consen 153 VQGKTAEEAEKLLEDAKALEEAGAFAIVLECV----------PAELAKAITEAL--SIPTIGIG 204 (261)
T ss_dssp -CSTSHHHHHHHHHHHHHHHHHT-SEEEEESB----------BHHHHHHHHHHS--SS-EEEES
T ss_pred EEecCHHHHHHHHHHHHHHHHcCccEEeeecC----------HHHHHHHHHHhC--CCCEEecC
Confidence 1 25688899999999998432 234455666777 89999666
No 492
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.90 E-value=0.86 Score=41.88 Aligned_cols=39 Identities=36% Similarity=0.424 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEe
Q 018919 193 DEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 193 ~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~ 232 (349)
.+.++++|+..+.||.+.+ +.+.++++.+.++ ||++++.
T Consensus 176 ~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 176 KELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred HHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 5779999988899999877 5668899999999 9999995
No 493
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=92.88 E-value=0.3 Score=44.40 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=52.9
Q ss_pred HHH-HHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHhCCCEEEEchHHH
Q 018919 218 ARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 292 (349)
Q Consensus 218 a~~-a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~kal~~GA~~V~ig~~~l 292 (349)
++. ....++|+|+++++ -.+.++..+.|..++++. +.||++.+|+. .+.+.+.|.. ||++.+|+.+=
T Consensus 169 v~dtver~~aDaVI~tG~----~TG~~~d~~el~~a~~~~--~~pvlvGSGv~-~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 169 VKDTVERGLADAVIVTGS----RTGSPPDLEELKLAKEAV--DTPVLVGSGVN-PENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred HHHHHHccCCCEEEEecc----cCCCCCCHHHHHHHHhcc--CCCEEEecCCC-HHHHHHHHHH-cCceEEEEEEc
Confidence 444 44577999999864 235677889998888887 59999999975 5788788887 99999999764
No 494
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.81 E-value=3.1 Score=37.55 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHcCCeEEe-cCCCCCCHHHHHhhCC-CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchh
Q 018919 89 GEYATARAASAAGTIMTL-SSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (349)
Q Consensus 89 ~~~~la~aa~~~G~~~~~-~~~~~~~~e~i~~~~~-~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~ 166 (349)
.....++.+.++|..++. +.. .+.+.+..... +..++ ....+ .+.++++.+.|++.+.++-..+ +
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~--~~~~~~~~~~~~~i~~i--~~v~~----~~~~~~~~~~gad~i~~~~~~~--~--- 134 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG--PPAEVVERLKAAGIKVI--PTVTS----VEEARKAEAAGADALVAQGAEA--G--- 134 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC--CCHHHHHHHHHcCCEEE--EeCCC----HHHHHHHHHcCCCEEEEeCcCC--C---
Confidence 355788899999988764 433 23222222221 21111 11112 2445667778999886532110 0
Q ss_pred HHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhcCCcEEEEE-ecCHHHHHHHHHcCCCEEEEec
Q 018919 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 233 (349)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-v~~~~~a~~a~~~G~d~I~v~~ 233 (349)
+...+ .+...++.++++++.+++||++-+ +.+++++..+.+.|+|+|.++.
T Consensus 135 -----G~~~~-----------~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS 186 (236)
T cd04730 135 -----GHRGT-----------FDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGT 186 (236)
T ss_pred -----CCCCc-----------cccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEch
Confidence 00000 011226789999988899987665 4567999999999999999953
No 495
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=92.74 E-value=3 Score=38.07 Aligned_cols=87 Identities=21% Similarity=0.310 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHcCCCEEEEe------------------cCCCCCCCCch---hhHHHHHHHHHHhcCCCcEEEecCCCCH
Q 018919 213 LTAEDARIAVQAGAAGIIVS------------------NHGARQLDYVP---ATIMALEEVVKATQGRIPVFLDGGVRRG 271 (349)
Q Consensus 213 ~~~~~a~~a~~~G~d~I~v~------------------~~gg~~~~~~~---~~~~~l~~i~~~~~~~ipvia~GGI~~~ 271 (349)
..+..++++++.|+..+.+- .+|-|.+.... +.+..+.+-.+..++++.+++-=-=+.+
T Consensus 77 g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~g 156 (255)
T COG3836 77 GDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAG 156 (255)
T ss_pred CCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHH
Confidence 45677888888888887763 11333222111 1122233322333346666666555777
Q ss_pred HHHHHHHH--hCCCEEEEchHHHH-HHhhcC
Q 018919 272 TDVFKALA--LGASGIFIGRPVVY-SLAAEG 299 (349)
Q Consensus 272 ~dv~kal~--~GA~~V~ig~~~l~-~~~~~G 299 (349)
-|.+.+++ -|.|+|++|-+=+. .++.-|
T Consensus 157 l~nLDaIaaveGVDgvFiGPaDLaas~G~~g 187 (255)
T COG3836 157 LDNLDAIAAVEGVDGVFIGPADLAASLGHLG 187 (255)
T ss_pred HHHHHHHHccCCCCeEEECHHHHHHHcCCCC
Confidence 88888888 49999999987543 344333
No 496
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=92.66 E-value=0.51 Score=45.64 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=62.8
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCc---h-HHHHHH
Q 018919 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK---M-DEDVKW 198 (349)
Q Consensus 123 ~~~~~Ql~~~~~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~---~-~~~i~~ 198 (349)
.|.++.|.+.-+.+.+.+.++.++++|++++.+ +++-. . + +. +..|. .. ....++-.+. . .+.+++
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l-~NT~~-~-~--~~---~~~~~-~~-~~~GGlSG~~i~p~al~~v~~ 280 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIA-TNTTV-S-R--SL---VQGPK-NS-DETGGLSGKPLQDKSTEIIRR 280 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEE-ECCCC-c-c--cc---ccCcc-cc-CCCCcccCHHHHHHHHHHHHH
Confidence 467888876545456788899999999999876 33321 0 0 00 00010 00 0011111121 1 456777
Q ss_pred HHHhc--CCcEE-EEEecCHHHHHHHHHcCCCEEEEe
Q 018919 199 LQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 232 (349)
Q Consensus 199 i~~~~--~~pv~-vK~v~~~~~a~~a~~~G~d~I~v~ 232 (349)
+++.. ++||+ +.++.+.+||...+.+||+.|.+.
T Consensus 281 ~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 281 LYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 77766 58876 677899999999999999999874
No 497
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=92.61 E-value=4.7 Score=38.57 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=48.2
Q ss_pred CCc-EEEecCCCCHHHHH----HHHHhCCC--EEEEchHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018919 259 RIP-VFLDGGVRRGTDVF----KALALGAS--GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 331 (349)
Q Consensus 259 ~ip-via~GGI~~~~dv~----kal~~GA~--~V~ig~~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 331 (349)
++| |+.++|+.. +... -|...||+ +|.+||+.-+ +++..++..=.+..+.+|...|..+|++|+.
T Consensus 242 ~~P~i~LSaGV~~-~~F~~~l~~A~~aGa~fnGvL~GRAtW~-------~~v~~~~~~g~~a~~~wL~t~g~~ni~~Ln~ 313 (329)
T PRK04161 242 HLPYIYLSAGVSA-KLFQETLVFAAEAGAQFNGVLCGRATWA-------GSVPVYITEGEEAARKWLCTEGFQNIDELNR 313 (329)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHhcCCCcccEEeehhhhh-------hhhhhhhcCCHHHHHHHHHHHhHHHHHHHHH
Confidence 566 667888775 3333 34458998 9999998644 2333333444567788888899999999986
Q ss_pred cceecccC
Q 018919 332 DHIVTEWD 339 (349)
Q Consensus 332 ~~l~~~~~ 339 (349)
..-.+..+
T Consensus 314 vl~~ta~~ 321 (329)
T PRK04161 314 VLEETASP 321 (329)
T ss_pred HHHccCCc
Confidence 54444333
No 498
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.56 E-value=5.1 Score=38.77 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHHHHhc-CCcEEEEEe
Q 018919 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWLQTIT-KLPILVKGV 212 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~v 212 (349)
+.+...+.++.+.++|++.|+++-.....| ..|. .+.+. .+ .++.++.+++.. +.++.+-.+
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~-------~s~~----~g~~~----~~--~~e~i~~~~~~~~~~~~~~ll~ 85 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGG-------SSFN----YGFGA----HT--DEEYIEAAAEVVKQAKIAALLL 85 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCC-------cccc----CCCCC----CC--HHHHHHHHHHhCCCCEEEEEec
Confidence 456777889999999999999864221000 0000 00000 01 167787776554 344443222
Q ss_pred ---cCHHHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhcCCC-cEEEecCCCCHHHHHH----HHHhCCCE
Q 018919 213 ---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFK----ALALGASG 284 (349)
Q Consensus 213 ---~~~~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i-pvia~GGI~~~~dv~k----al~~GA~~ 284 (349)
.+.++.+.+.+.|+|.|.+..|-.. .....+.+..+++ .+..+ --+.+.+..+++.+++ +..+||+.
T Consensus 86 pg~~~~~dl~~a~~~gvd~iri~~~~~e----~~~~~~~i~~ak~-~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~ 160 (337)
T PRK08195 86 PGIGTVDDLKMAYDAGVRVVRVATHCTE----ADVSEQHIGLARE-LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQC 160 (337)
T ss_pred cCcccHHHHHHHHHcCCCEEEEEEecch----HHHHHHHHHHHHH-CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCE
Confidence 3789999999999999988754211 1112233333322 22121 1233445667766654 33479999
Q ss_pred EEEchHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018919 285 IFIGRPVVYSLAAEGEKGVRRVLEMLREEF 314 (349)
Q Consensus 285 V~ig~~~l~~~~~~G~~gv~~~l~~l~~el 314 (349)
|.+.-.+ +.--++.+.+++..+++++
T Consensus 161 i~i~DT~----G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 161 VYVVDSA----GALLPEDVRDRVRALRAAL 186 (337)
T ss_pred EEeCCCC----CCCCHHHHHHHHHHHHHhc
Confidence 8876532 1112455666666666655
No 499
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.56 E-value=0.8 Score=42.15 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=56.2
Q ss_pred CCcEEEEEecCHHHHHHHHHcCCCEEEEecCCCC----CCCCchhhHHHH----HHHHHHhcCCCcEEEecCCCCH---H
Q 018919 204 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMAL----EEVVKATQGRIPVFLDGGVRRG---T 272 (349)
Q Consensus 204 ~~pv~vK~v~~~~~a~~a~~~G~d~I~v~~~gg~----~~~~~~~~~~~l----~~i~~~~~~~ipvia~GGI~~~---~ 272 (349)
+-|+.+-++-+.-.|+.+.++|+|+|.+++.+.. ..|.+.-+++.+ +.+.+.. ...||++|.---++ +
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 5688877777888899999999999999875331 123333344333 3333333 24799998755544 4
Q ss_pred H----HHHHHHhCCCEEEEc
Q 018919 273 D----VFKALALGASGIFIG 288 (349)
Q Consensus 273 d----v~kal~~GA~~V~ig 288 (349)
+ +.+++.+||++|-|-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 5 445677999999994
No 500
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=92.55 E-value=0.91 Score=43.82 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhhcCCCCcCcccccCCCCCCchHHHHHHH-HHh-cCCcEEEEEecC
Q 018919 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEDVKWL-QTI-TKLPILVKGVLT 214 (349)
Q Consensus 137 ~~~~~~~~~~~~G~~~i~i~~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~i-~~~-~~~pv~vK~v~~ 214 (349)
.....++.+.+.|++++.++.+. ++.. +.. -++|+++|.-.+
T Consensus 92 dp~~~i~~a~~~g~dAv~~~~G~------------------------------------l~~~~~~~~~~iplIlkln~~ 135 (348)
T PRK09250 92 DPENIVKLAIEAGCNAVASTLGV------------------------------------LEAVARKYAHKIPFILKLNHN 135 (348)
T ss_pred CHHHHHHHHHhcCCCEEEeCHHH------------------------------------HHhccccccCCCCEEEEeCCC
Confidence 34567888889999999876532 1110 011 146777775310
Q ss_pred -------H------HHHHHHHHcCCCEEEEecCCCCCCCCchhhHHHHHHHHHHhc-CCCcEEE-----ecCCCCHH---
Q 018919 215 -------A------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFL-----DGGVRRGT--- 272 (349)
Q Consensus 215 -------~------~~a~~a~~~G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~-~~ipvia-----~GGI~~~~--- 272 (349)
+ ..++.|++.|||+|.++-.-|. +.....++.+.++.+.+. -.+|+++ .+.|.+..
T Consensus 136 t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs--~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~ 213 (348)
T PRK09250 136 ELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGS--EESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYH 213 (348)
T ss_pred CCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCC--HHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCccccc
Confidence 0 2367799999999998754331 111234555555555443 2688887 22333333
Q ss_pred ---HHH-----HHHHhCCCEEEEch
Q 018919 273 ---DVF-----KALALGASGIFIGR 289 (349)
Q Consensus 273 ---dv~-----kal~~GA~~V~ig~ 289 (349)
|++ -+.++|||.|=+--
T Consensus 214 ~~~d~Ia~AaRiaaELGADIVKv~y 238 (348)
T PRK09250 214 TAADLTGQANHLAATIGADIIKQKL 238 (348)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEecC
Confidence 233 34568999987654
Done!