BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018924
(349 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224138182|ref|XP_002322750.1| predicted protein [Populus trichocarpa]
gi|222867380|gb|EEF04511.1| predicted protein [Populus trichocarpa]
Length = 516
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 232/341 (68%), Gaps = 4/341 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+MR+LG AR +V+ ML LYYKTGN EKLD LM EMEENGI++D++ YC RLS+YA
Sbjct: 170 MQRMRELGFARKPLVFTVMLNLYYKTGNTEKLDPLMREMEENGISFDKFAYCIRLSSYAA 229
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD EG++K L +E+DPNV LDW YATV NGY KVGLLDKAL MLK+ E I G + +
Sbjct: 230 ASDSEGLEKTLKRIESDPNVVLDWATYATVANGYSKVGLLDKALEMLKRCERLITGERRS 289
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ Y+ ++T Y G K+DVLR+WEL+K+ V N +VI+SLLK DDLESAEKIFEEW
Sbjct: 290 TPYDYLMTQYATTGTKEDVLRVWELHKRYVG--NRKNISVITSLLKFDDLESAEKIFEEW 347
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ESQ LC D IPNFL+D Y R GLLEKAE L+ G + + +WY LA GY Q++Q
Sbjct: 348 ESQKLCDDIIIPNFLVDAYSRKGLLEKAEMLLQRTMSNGTKPNANTWYLLAKGYLQHNQT 407
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAVEAMK+++ + + +PS S ACL + KD GD+ AE FI LL +K I D+
Sbjct: 408 PKAVEAMKEMIVL--SGPRSRPSTVSWVACLQHLKDSGDMDNAEGFINLLREKDIISLDI 465
Query: 301 QDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTS 341
QDKLL +++ S L+ L L G+SL G T P D +
Sbjct: 466 QDKLLSYIKDRDSRLDALSALKGSSLHGISVTHEIPRPDQA 506
>gi|224138178|ref|XP_002322749.1| predicted protein [Populus trichocarpa]
gi|222867379|gb|EEF04510.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 174/325 (53%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M+ LG A T +VYN +L YY+TGN +K++SLM EME+NGI D++ + +LSAYA
Sbjct: 183 VQEMKSLGFANTLLVYNVILNFYYQTGNPDKINSLMQEMEQNGIGCDKFAHSIQLSAYAS 242
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD GI+K L ME+DPNV LDW Y GY KVGL+DKAL ML+KSE + G +
Sbjct: 243 VSDIVGIEKTLAKMESDPNVFLDWTSYTAAAKGYIKVGLVDKALEMLEKSERLVTGKRRG 302
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+AY+ ++TLY GK ++VLRIWELYKK KV Y ++I+SLLKLDD E+AEKIFEEW
Sbjct: 303 TAYDSLITLYAATGKTNEVLRIWELYKKNEKVYKEAYISIITSLLKLDDFENAEKIFEEW 362
Query: 181 ESQ-ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E Q CYD IPNFLID Y R GL+EKAE L++ KG E + K+WY+LATGY QN Q
Sbjct: 363 EFQNHSCYDIHIPNFLIDAYSRKGLVEKAETLIDRAISKGGEPNAKTWYHLATGYLQNGQ 422
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KAVEAMKK + + WKPS E LA CL Y K EGD+G NF++LL D I D
Sbjct: 423 TLKAVEAMKKAVVVSGRM--WKPSNEILANCLGYLKVEGDLGKLTNFMDLLRDNDIISLD 480
Query: 300 LQDKLLDNVQNGKSNLETLRELYGN 324
+Q++LL++++N KS+ + L L N
Sbjct: 481 IQERLLNHIKNAKSSSDVLGALNNN 505
>gi|359497206|ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Vitis vinifera]
Length = 494
Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 164/324 (50%), Positives = 217/324 (66%), Gaps = 2/324 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ++RDLG RT + YN+++ +YY+ GN+EKLD LMHEMEE GI D++T RLSAYA
Sbjct: 172 MQRLRDLGFVRTALGYNTLMNVYYRMGNWEKLDILMHEMEEKGIFCDKFTLAIRLSAYAA 231
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
AS+ GID I+T ME+DP + LDW YA V +GY KVGL+DK L M+KK EE I N
Sbjct: 232 ASNIVGIDNIVTRMESDPRIILDWNSYAVVAHGYLKVGLVDKTLVMMKKLEELIDAKGSN 291
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
A++ +L LY + ++D++ R+W LYKK K+ N GY +ISSLLK DD+++AEK+ EEW
Sbjct: 292 VAFDNLLKLYAETRQRDELDRVWMLYKKKEKIYNKGYMAMISSLLKFDDIDAAEKVLEEW 351
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES+ L YD R+PNFLID YCR GL EKAE LVN KG V +W+YLA GY ++SQI
Sbjct: 352 ESRRLSYDFRVPNFLIDAYCRKGLTEKAEALVNKILTKGGNPLVDTWFYLANGYLEDSQI 411
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAVEA+KK + WKPS +LA CL+Y + D+ GA FI L ++G +
Sbjct: 412 PKAVEALKKAVVVCPP--NWKPSKNTLATCLEYLEGNRDVEGAGEFIRFLQNEGIFSVGV 469
Query: 301 QDKLLDNVQNGKSNLETLRELYGN 324
+LL ++NGK L E+ G+
Sbjct: 470 CKRLLSYIENGKPQPNRLGEIEGD 493
>gi|225446335|ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial [Vitis vinifera]
Length = 499
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 151/321 (47%), Positives = 203/321 (63%), Gaps = 3/321 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+MRD+G +T + YN ML LY + G EKLD+LM EMEENGI D +TYC RL+AY
Sbjct: 159 MQEMRDMGFVKT-LSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCA 217
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD EG++K+L +E DP V DW Y NGY K L +KA+ MLKKSE+ I G
Sbjct: 218 TSDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFISGRSRR 277
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++LTLY G K +V RIW LYK K N GY ++SSLLKLDD++ AEK FEEW
Sbjct: 278 FGYEILLTLYATMGNKTEVYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEW 337
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S +D R+PN LI YC+ GLLEKAE LV+ +G E +W LA GY +N+Q+
Sbjct: 338 LSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQM 397
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAV+ +KK L A T WKP+ +L+ACL+Y K +GD+ AEN I LL ++ +
Sbjct: 398 EKAVDTLKKALLA--TSQGWKPNPVTLSACLEYLKGKGDVEEAENLIRLLREQSLVSAYD 455
Query: 301 QDKLLDNVQNGKSNLETLREL 321
D+L++ +++ + T+ ++
Sbjct: 456 SDRLVNYIRSEEPGSSTIAQM 476
>gi|147775992|emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]
Length = 499
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/321 (46%), Positives = 201/321 (62%), Gaps = 3/321 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+MRD+G +T + YN ML LY + G EKLD+LM EMEENGI D +TYC RL+AY
Sbjct: 159 MQEMRDMGFVKT-LSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCA 217
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD EG++K+L +E DP V DW Y NGY K L +KA+ MLKKSE+ I G
Sbjct: 218 TSDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFISGRSRR 277
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++LTLY G K + RIW LYK K N GY ++SSLLKLDD++ AEK FEEW
Sbjct: 278 FGYEILLTLYATMGNKTEXYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEW 337
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S +D R+PN LI YC+ GLLEKAE LV+ +G E +W LA GY +N+Q+
Sbjct: 338 LSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQM 397
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAV+ +KK L A T WKP+ +L+ACL+Y K + D+ AEN I LL ++ +
Sbjct: 398 EKAVDTLKKALLA--TSQGWKPNPVTLSACLEYLKGKXDVEEAENLIRLLREQSLVSAYD 455
Query: 301 QDKLLDNVQNGKSNLETLREL 321
D+L++ +++ + T+ ++
Sbjct: 456 SDRLVNYIRSEEPGSSTIAQM 476
>gi|255553771|ref|XP_002517926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542908|gb|EEF44444.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/290 (48%), Positives = 193/290 (66%), Gaps = 5/290 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKM+DLG + ++ YN ML LY GN+EKLD L+ EMEENGI+ DR TYC RL+A +
Sbjct: 163 MQKMKDLGFVKNSLSYNVMLSLYSHMGNYEKLDPLVQEMEENGISCDRITYCIRLNACVN 222
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+SD EG++K+L ME DPN+++ + Y NGY K GL+DK L MLK+SE+ I G
Sbjct: 223 SSDIEGMEKLLMKMEVDPNISVGFHAYVIAANGYLKAGLVDKTLIMLKRSEQLISGNTRR 282
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY +LTLY G K +V RIW YK+ + N+GY +ISSLLKLDD++ AE+IFEEW
Sbjct: 283 FAYEFLLTLYTASGNKAEVYRIWNKYKEIGRFFNSGYICMISSLLKLDDIDGAERIFEEW 342
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+S+ + +D RIPN +++VY R G LEKAE +N G E SW +LA GY + Q+
Sbjct: 343 DSKKVLFDIRIPNSMVNVYSRKGHLEKAETYINKIVASGEEPDATSWNHLAAGYHSSGQM 402
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
KAVE ++K ++ + WKPS+ +L+ACL++ K +GD AE ELL
Sbjct: 403 TKAVETIRKAISVSKP--GWKPSLLTLSACLEFLKGQGD---AETLEELL 447
>gi|449523946|ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 461
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 199/294 (67%), Gaps = 7/294 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQK++++G A + + YN M+ LY++ G FE+LDSL+ EM+E G+ YDR+TY R+SAYA
Sbjct: 153 MQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIRISAYAA 212
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD GI+KI+ ME++P++ LDW Y N Y KVGL+DK+++MLKKSE + K
Sbjct: 213 ASDFRGIEKIMEQMESNPSIVLDWNCYVIAANAYNKVGLIDKSISMLKKSEGLLANVKKK 272
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
A+NV L LY + GKKD++ RIW LYKK K+ N G+ ++I+SLL LDD++ AE+I++E
Sbjct: 273 GFAFNVYLKLYARNGKKDEIHRIWNLYKKE-KIFNKGFISMITSLLILDDIKGAERIYKE 331
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE++ L YD RIPN L+D YCR GL+EKAE L+N + R+ V+SW YLA+GY Q Q
Sbjct: 332 WETRKLSYDLRIPNLLVDAYCRAGLMEKAEVLLNEMVIVRRKFSVESWCYLASGYLQKDQ 391
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+ +AVE +K LAA + E LAA LD + D+ E + LL +K
Sbjct: 392 LPQAVETLK--LAASVCPSRLNYVKEILAAFLD---GKQDVEETEKVVNLLREK 440
>gi|449438086|ref|XP_004136821.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 486
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 204/323 (63%), Gaps = 2/323 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKMR++G +T + YN+ML LY + G EKLD L+ EMEE GI ++R+TY R++AYA
Sbjct: 160 MQKMREVGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNVRMNAYAA 219
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD ++K+L+ MEADP VA DW IY TVGNGY K GL + +++MLKK+E+ I +
Sbjct: 220 ASDITNMEKLLSKMEADPLVATDWHIYFTVGNGYFKAGLSENSISMLKKAEQLIGDKQKW 279
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY ++TLY G KD+V R+W LY K N+GY +ISSL+KLDD++ AE+I +EW
Sbjct: 280 LAYQYLMTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAERILKEW 339
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES +D +IPN +I+ YC G ++KAE ++ G+E +W LA+GY N
Sbjct: 340 ESGDTSFDFKIPNMMINSYCTKGFVDKAEAYISRLIENGKEPRAYAWDRLASGYHSNGLT 399
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+KA E +KK ++ + +WKP+ + LAACL+Y K G++ AE I LL + P ++
Sbjct: 400 NKAAETLKKAISV--SPPRWKPNYDILAACLEYLKTNGNVELAEEIIGLLCKRDIFPLNI 457
Query: 301 QDKLLDNVQNGKSNLETLRELYG 323
+L D + + N +L G
Sbjct: 458 CKRLEDYIHSENQNSIKCLDLLG 480
>gi|449479000|ref|XP_004155477.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 493
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 142/331 (42%), Positives = 197/331 (59%), Gaps = 4/331 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKMR++G +T + YN+ML LY G EKL L+ EMEE GI DR+TY R++AYA
Sbjct: 160 MQKMREVGFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAA 219
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD ++K+L+ MEADP VA DW Y VGNGY K GL + ++ MLKK+E+ I +
Sbjct: 220 ASDITNMEKLLSKMEADPLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQFIGDKQKW 279
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY ++TLY G KD+V R+W LY K N+GY +ISSL+KLDD++ AE+I +EW
Sbjct: 280 LAYQYLMTLYAAIGNKDEVYRVWNLYTNLRKRFNSGYLCIISSLMKLDDIDGAERILKEW 339
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES +D RIPN +I+ YC G ++KAE +N G+E +W LA+GY N
Sbjct: 340 ESGDTSFDFRIPNMMINSYCMKGFVDKAEAYINRLIETGKEPEANTWDLLASGYHSNGLT 399
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+K E +KK ++ + WKP LAACL+Y K ++ AE I LL + P ++
Sbjct: 400 NKVAETLKKAISV--SPPHWKPKYHILAACLEYLKTNENVDLAEEIIGLLCKRDIFPLNI 457
Query: 301 QDKLLDNVQNGKSNLETLRELYGNSLAGNEE 331
+L D +++ N +L G L G E
Sbjct: 458 CKRLEDYIRSENQNSIKCLDLLG--LKGQNE 486
>gi|449438490|ref|XP_004137021.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 334
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 194/323 (60%), Gaps = 2/323 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKMR++G +T + YN+ML LY G EKL L+ EMEE GI DR+TY R++AYA
Sbjct: 1 MQKMREVGFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAA 60
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD ++K+L+ MEADP VA DW Y VGNGY K GL + ++ MLKK+E+ I +
Sbjct: 61 ASDITNMEKLLSKMEADPLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQFIGDKQKW 120
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY ++TLY G KD+V R+W LY K N+GY +ISSL+KLDD++ AE+I +EW
Sbjct: 121 LAYQYLMTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAERILKEW 180
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES +D RIPN +I+ YC G ++KAE +N G+E +W LA+GY N
Sbjct: 181 ESGDTSFDFRIPNMMINSYCTKGFVDKAEAYINRLIETGKEPEANTWDLLASGYHSNGLT 240
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+K E +KK ++ + WKP LAACL+Y K ++ AE I LL + P ++
Sbjct: 241 NKVAETLKKAISV--SPPHWKPKYHILAACLEYLKTNENVDLAEEIIGLLCKRDIFPLNI 298
Query: 301 QDKLLDNVQNGKSNLETLRELYG 323
+L D +++ N +L G
Sbjct: 299 CKRLEDYIRSENQNSIKCLDLLG 321
>gi|224121672|ref|XP_002330624.1| predicted protein [Populus trichocarpa]
gi|222872228|gb|EEF09359.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 199/347 (57%), Gaps = 5/347 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR++G R + YN ML LYY+ G +EK+ LM EME+ GI + TY L+AY
Sbjct: 157 MRKMREMGFVRNVLSYNVMLNLYYQMGKYEKIQVLMQEMEKWGICFSNITYKILLNAYVA 216
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S+ E I KIL MEADP V++DW Y NGY K GL+DK L ML +SE+ I G
Sbjct: 217 TSNIEEIKKILMKMEADPLVSIDWYAYVVAANGYLKAGLIDKTLTMLWRSEQLISGKSAR 276
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
A +L+LY G K+ V R+W LYK + LN+ Y +I+SLLKLDD++ AE+I+EEW
Sbjct: 277 FACETLLSLYTAVGNKEQVYRVWNLYKTKGRSLNSSYLCMINSLLKLDDVDGAERIWEEW 336
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S +D RIPN ++ Y + GL EKAE V G +I + LATGY Q+
Sbjct: 337 VSIVKFFDIRIPNVMVSAYSKKGLWEKAEAFVGKIVASGIKIEASTLDRLATGYHVRGQM 396
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KA E +KK ++ Q WKP+V +LAACL+Y K D+ E+ +++L + + +
Sbjct: 397 LKASETIKKAISISQP--GWKPNVYTLAACLEYLKGREDVKKIEDPLKILKEHCHLSSVS 454
Query: 301 QDKLLDNVQNGKSNL--ETLRELYGNSLAGNEETLSGPEGDTSDLIE 345
D+L ++ + K NL L + G A N ET + E + D E
Sbjct: 455 YDRLNSSIID-KENLCARALDHMEGEDQALNGETPAATEFEDKDSAE 500
>gi|388517969|gb|AFK47046.1| unknown [Lotus japonicus]
Length = 496
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 186/305 (60%), Gaps = 3/305 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+K+++L TV YN +LKLY + G +EKLD LM EM+EN + + T+ RL+AY
Sbjct: 158 MKKIKELRPMHLTVCYNILLKLYAQKGKYEKLDRLMQEMKENDLC-NGATFTIRLNAYVA 216
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A D EG++K+L MEADP +DW Y+T NGY K G ++KALA LKKSE+ +KG K+
Sbjct: 217 AKDVEGMEKLLMQMEADPMATVDWYTYSTAANGYLKAGNVEKALAALKKSEQSVKGKKLR 276
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY + + Y G KD+V R+W K N+ Y ++SSLLKLDD + AEKI EW
Sbjct: 277 LAYESLQSTYAAIGNKDEVYRLWNRIKNLQNCWNSSYICMLSSLLKLDDFDGAEKILAEW 336
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES+ +DTRIPN +I YC+ GLL+KAE + G+++ SW +A GY ++ +
Sbjct: 337 ESEHKNFDTRIPNLMITAYCKRGLLDKAEAYIQKLLDSGKKLDGSSWDRMAAGYHMDNDM 396
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAV+ MKK + A + W+PS +L AC+ Y K++ D+ A ++L + G I
Sbjct: 397 EKAVQTMKKAILANRP--GWRPSPSTLVACITYLKEKLDLESALEILKLCKEDGHIKITT 454
Query: 301 QDKLL 305
D L+
Sbjct: 455 YDGLV 459
>gi|15225409|ref|NP_179663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206559|sp|Q9SKU6.1|PP166_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g20710, mitochondrial; Flags: Precursor
gi|4454477|gb|AAD20924.1| hypothetical protein [Arabidopsis thaliana]
gi|51315392|gb|AAT99801.1| At2g20710 [Arabidopsis thaliana]
gi|330251965|gb|AEC07059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 490
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 181/299 (60%), Gaps = 2/299 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M++LG + + YN ML LY +TG + ++ L+ EME+ + D +T TRL AY+
Sbjct: 162 FQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSV 221
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD EG++K L EAD + LDW YA NGY K GL +KAL ML+KSE+ + K
Sbjct: 222 VSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRK 281
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V+++ YG GKK++V R+W LYK+ N GY +VIS+LLK+DD+E EKI EEW
Sbjct: 282 HAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEW 341
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E+ +D RIP+ LI YC+ G++EKAE +VN K R +W LA GY+ ++
Sbjct: 342 EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKM 401
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KAVE K+ + + W+P L +C+DY + + D+ G + LL+++G I D
Sbjct: 402 EKAVEKWKRAIEVSKP--GWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHISYD 458
>gi|42570837|ref|NP_973492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|119935915|gb|ABM06033.1| At2g20710 [Arabidopsis thaliana]
gi|330251966|gb|AEC07060.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 395
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 181/299 (60%), Gaps = 2/299 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M++LG + + YN ML LY +TG + ++ L+ EME+ + D +T TRL AY+
Sbjct: 67 FQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSV 126
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD EG++K L EAD + LDW YA NGY K GL +KAL ML+KSE+ + K
Sbjct: 127 VSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRK 186
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V+++ YG GKK++V R+W LYK+ N GY +VIS+LLK+DD+E EKI EEW
Sbjct: 187 HAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEW 246
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E+ +D RIP+ LI YC+ G++EKAE +VN K R +W LA GY+ ++
Sbjct: 247 EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKM 306
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KAVE K+ + + W+P L +C+DY + + D+ G + LL+++G I D
Sbjct: 307 EKAVEKWKRAIEVSKP--GWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHISYD 363
>gi|255553773|ref|XP_002517927.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542909|gb|EEF44445.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 200/333 (60%), Gaps = 4/333 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+MR+ G+A ++ YN M+ LY + G FEK+D L EME NGI D+YT ++AY
Sbjct: 172 LQEMREKGIATSSFPYNIMINLYAQNGAFEKIDILKEEMERNGIPQDKYTMRNLMAAYVA 231
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD G+++IL +E P + W Y+ +GY KVGL++KAL ML+K EE + K
Sbjct: 232 ASDISGMERILNQLETHPQLGHGWQAYSVAASGYLKVGLIEKALKMLRKMEETMPIGKKT 291
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
SA+N +LTLY K G+KD++ R+W YK +V + +ISSL K+DD+E AE+IFEEW
Sbjct: 292 SAFNYLLTLYAKTGRKDELYRVWNSYKPLAEVKETQFCCMISSLEKVDDIEGAERIFEEW 351
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ESQ + YD R+ N L+ YCR GL KAE + +GR + +W +A Y +Q+
Sbjct: 352 ESQCMMYDFRVLNKLLLAYCRKGLYTKAEA-AFKKAAEGRTPYASTWITMAMSYIGQNQM 410
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAVE +KK ++ + WKP+ +L CLDY +++GD+ G E ++ L + D+
Sbjct: 411 SKAVEMLKKAISVSRK--GWKPNPITLTTCLDYLEEQGDVEGIEEIVKSLKSTESLTRDI 468
Query: 301 QDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
+L+ G + + ++ +++A +EET
Sbjct: 469 YHRLVRTYTAAGIPVTKVIDKMKMDNIAADEET 501
>gi|297832672|ref|XP_002884218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330058|gb|EFH60477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 491
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 123/299 (41%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M++LG + + YN ML LY +TG + ++ L+ EME+ + D +T TRL AY+
Sbjct: 163 FQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDGTVKPDIFTVNTRLHAYSA 222
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD EG++K L EAD + LDW YA NGY K GL +KA+ ML+KSE+ + K
Sbjct: 223 VSDVEGMEKFLMRCEADTGLHLDWRTYADTANGYIKAGLTEKAIEMLRKSEQMVNPRKRK 282
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V+++ YG GKK++V R+W LYK+ N GY +VIS+LLK+DD+E EKI EEW
Sbjct: 283 HAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEW 342
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E+ +D RIP+ LI YC+ G++EKAE +VN K R +W LA GY+ ++
Sbjct: 343 EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNMLVQKWRVEDTSTWERLALGYKMAGEM 402
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KAVE K+ + + W+P L +C+DY + D+ + LL+++G I D
Sbjct: 403 EKAVEKWKRAIDVSKP--GWRPHQVVLMSCVDYLEGRRDMESLRKILRLLSERGHISYD 459
>gi|224121680|ref|XP_002330626.1| predicted protein [Populus trichocarpa]
gi|222872230|gb|EEF09361.1| predicted protein [Populus trichocarpa]
Length = 441
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 181/295 (61%), Gaps = 6/295 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKMR+LGL +T + YN ML LY G +EKL++L+ EMEE G+ D YT+ RL AY
Sbjct: 128 MQKMRELGLVQT-LSYNVMLSLYSHMGRYEKLEALVKEMEEKGVNSDIYTFNIRLHAYVA 186
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE---QIKGA 117
S+ E ++K+L ME D + +D+ + V NGY K GLL+K++ MLK++EE + G
Sbjct: 187 TSNIEEMEKLLMKMETDSLINIDFHTFFAVANGYLKAGLLEKSIVMLKRAEELTVPMVGT 246
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
AY ++LTLYG G KD V R+W YK ++ N+ Y +I+SL++L D++ AE I
Sbjct: 247 TKAHAYEMLLTLYGSAGNKDGVYRVWNSYKNTGRIFNSTYICMINSLMRLGDIDGAEWIS 306
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EEW S+ YD RIPN +I Y R GL +KAE VN G ++ SW +LATGY
Sbjct: 307 EEWVSRKTLYDIRIPNTMIRAYSRKGLWKKAEEYVNKIVESGMQLEASSWDHLATGYHFG 366
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
Q+ KAVE +KK ++ + WKP+ +L CL Y + +GD AE ++ +++
Sbjct: 367 GQMAKAVETLKKAISISKP--GWKPNPYTLKTCLWYLESKGDEEAAEELLKFVSE 419
>gi|255553777|ref|XP_002517929.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542911|gb|EEF44447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 5/311 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR G+A + YN ++ LY K G++EK++ L+ EME NG+ YT ++AY
Sbjct: 132 MEEMRAKGMANSCFPYNLLINLYPKNGDYEKINMLIQEMETNGVVRGAYTMSNLMAAYVA 191
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
AS+ G+++IL +E DP + DW +Y+ +GY K GL++KAL ML+K E+ + K
Sbjct: 192 ASNISGMERILNQIEKDPQLGNDWRVYSVAASGYLKFGLIEKALTMLRKLEDVMPLEKKT 251
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
SA+++++TLYGK GK+D++ +W YK +++ +ISSL KLDD++ AEKIF EW
Sbjct: 252 SAFDILVTLYGKTGKRDELYLVWNTYKPLIELKETSVMTMISSLSKLDDIKGAEKIFREW 311
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ESQ + YD R+ N L+ YCR GLL+KAE + K R SW LA GY +++Q+
Sbjct: 312 ESQCMMYDFRVLNTLLFAYCRKGLLKKAEA-AVEKAAKDRTPCASSWGILAMGYIEHNQM 370
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+KAVE +KK L+ W+P+ +L ACL++ + +GD+ G E +LL K P +
Sbjct: 371 YKAVEMLKKALSISGQ--GWRPNSMTLTACLNFLEKQGDVEGVEEVTKLL--KSLEPLNE 426
Query: 301 QDKLLDNVQNG 311
K L N G
Sbjct: 427 VTKELGNFDEG 437
>gi|449438486|ref|XP_004137019.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
gi|449479168|ref|XP_004155524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 500
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 194/335 (57%), Gaps = 7/335 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+MR +G+A T+ YN ++ LY + G +K+D L+ EM+ GI D Y+ +AY
Sbjct: 160 MQEMRKMGIATTSFAYNVLINLYAQIGQHDKIDLLIEEMKTKGIPQDIYSIRNLCAAYVA 219
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++KIL +E D + DW IY+ NGY GL +AL+MLKK+EE+++
Sbjct: 220 KADISGMEKILKRIEEDSELKADWTIYSIAANGYLTAGLETEALSMLKKTEEKVRPNTNK 279
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
A+ +L+LY + G K++V R+W +K K Y +I+SL KLDD+E AE+IF+EW
Sbjct: 280 FAFKFLLSLYERTGHKNEVYRVWNTFKPLTKETCVPYALMITSLAKLDDIEGAERIFQEW 339
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES+ YD R+ N L+ YCR GLL+KAE++VN ++ R +W LATGY + +
Sbjct: 340 ESKCTVYDFRVLNRLLVAYCRKGLLDKAESVVNQAVVE-RTPFRSTWSILATGYAEYGHM 398
Query: 241 HKAVEAMKK-VLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
KAVE +KK +L Q WKP + L ACLDY + +GD + + L G +
Sbjct: 399 SKAVEMLKKAILVGRQN---WKPKQGDILEACLDYLEKQGDAETMDEIVRLCKSSGTVMK 455
Query: 299 DLQDKLL-DNVQNGKSNLETLRELYGNSLAGNEET 332
++ +LL ++ GK + L ++ + A +EE
Sbjct: 456 EMYYRLLRTSIAGGKPVISILEQMKMDGFAADEEV 490
>gi|359485373|ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Vitis vinifera]
Length = 461
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 189/318 (59%), Gaps = 4/318 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKMR++ A ++ YN ++ LY +TGN K+++L+ EM+ I D +T + AY
Sbjct: 146 MQKMREMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQSKAIPCDAFTVRNLMVAYVA 205
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD ++K L ME DP++++DW IY+ +GY KVGL+DKAL MLKK E +
Sbjct: 206 ASDISAMEKFLNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNRPHLERL 265
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
SA+ +L+LY + G K ++ R+W LYK + + Y +I+ L KLDD+E AEKIF+EW
Sbjct: 266 SAFKFLLSLYARTGHKQELYRVWNLYKPSYE-YPEAYSCMITCLTKLDDIEGAEKIFQEW 324
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E + YD R+ N L+ YC+ L +KAE+LVN + ++ R + +W LA GY ++ Q+
Sbjct: 325 ECECTMYDFRVLNRLLSAYCKRCLFDKAESLVN-KVIEERMPYASTWNILAKGYVEDKQM 383
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAVE +KK ++ + W+P+ L AC++Y + +G++ E L + G D+
Sbjct: 384 PKAVEMLKKAISVGRK--GWRPNSIILDACIEYLEGQGNLEEIEEIARLCKNLGIPDGDI 441
Query: 301 QDKLLDNVQNGKSNLETL 318
+LL G+ ++ +
Sbjct: 442 HHRLLRTSAAGEKSVSAI 459
>gi|147766620|emb|CAN73943.1| hypothetical protein VITISV_032243 [Vitis vinifera]
Length = 448
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 188/318 (59%), Gaps = 4/318 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKMR++ A ++ YN ++ LY +TGN K+++L+ EM+ I D +T + AY
Sbjct: 133 MQKMREMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQXKAIPCDAFTVXNLMVAYVA 192
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD ++K L ME DP++++DW IY+ +GY KVGL+DKAL MLKK E +
Sbjct: 193 ASDISAMEKXLNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNRPHLERX 252
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
SA+ +L+LY + K ++ R+W LYK + + Y +I+ L KLDD+E AEKIF+EW
Sbjct: 253 SAFKXLLSLYARTXHKQELYRVWNLYKPSYE-YPEAYSCMITCLTKLDDIEGAEKIFQEW 311
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E + YD R+ N L+ YC+ L +KAE+LVN + ++ R + +W LA GY ++ Q+
Sbjct: 312 ECECTMYDFRVLNRLLSAYCKRCLFDKAESLVN-KVIEERMPYASTWNILAKGYVEDKQM 370
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAVE +KK ++ + W+P+ L AC++Y + +G++ E L + G D+
Sbjct: 371 PKAVEMLKKAISVGRK--GWRPNSIILDACIEYLEGQGNLEEIEEIARLCKNLGIPDGDI 428
Query: 301 QDKLLDNVQNGKSNLETL 318
+LL G+ ++ +
Sbjct: 429 HHRLLRTSAAGEKSVSAI 446
>gi|302143278|emb|CBI21839.3| unnamed protein product [Vitis vinifera]
Length = 501
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 182/304 (59%), Gaps = 4/304 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKMR++ A ++ YN ++ LY +TGN K+++L+ EM+ I D +T + AY
Sbjct: 146 MQKMREMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQSKAIPCDAFTVRNLMVAYVA 205
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD ++K L ME DP++++DW IY+ +GY KVGL+DKAL MLKK E +
Sbjct: 206 ASDISAMEKFLNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNRPHLERL 265
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
SA+ +L+LY + G K ++ R+W LYK + + Y +I+ L KLDD+E AEKIF+EW
Sbjct: 266 SAFKFLLSLYARTGHKQELYRVWNLYKPSYE-YPEAYSCMITCLTKLDDIEGAEKIFQEW 324
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E + YD R+ N L+ YC+ L +KAE+LVN + ++ R + +W LA GY ++ Q+
Sbjct: 325 ECECTMYDFRVLNRLLSAYCKRCLFDKAESLVN-KVIEERMPYASTWNILAKGYVEDKQM 383
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAVE +KK ++ + W+P+ L AC++Y + +G++ E L + G D+
Sbjct: 384 PKAVEMLKKAISVGRK--GWRPNSIILDACIEYLEGQGNLEEIEEIARLCKNLGIPDGDI 441
Query: 301 QDKL 304
+
Sbjct: 442 HHRF 445
>gi|224121664|ref|XP_002330622.1| predicted protein [Populus trichocarpa]
gi|222872226|gb|EEF09357.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/273 (41%), Positives = 171/273 (62%), Gaps = 5/273 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+MR+ G+ ++ YN ++ LY +TG+F+K+ LM EME NGI D+YT ++A
Sbjct: 67 MQEMREGGMTTSSFPYNILIILYSQTGDFDKIPPLMKEMERNGIAEDKYTLRNLIAASVA 126
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
ASD G+++IL +ME +P + LDW +YA + Y K+G ++ AL ML+K E+ + K
Sbjct: 127 ASDISGVERILKLMEENPELGLDWKLYAMAADAYLKIGSIETALTMLEKLEKWMAFRKKK 186
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ +N +L+LY K G KD++ RIW LYK + + ++ Y +I SL KLDD+E AEKIFEEW
Sbjct: 187 AVFNFLLSLYAKTGNKDELYRIWNLYKPSSESMDTSYCCMIDSLTKLDDIEGAEKIFEEW 246
Query: 181 ESQA-LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
ESQ YD R+ N L+ YC GL EKAE + + ++GR + +W+ +A GY ++ Q
Sbjct: 247 ESQCTTTYDFRVLNGLLVAYCNRGLFEKAEAAI-EKAVQGRTPYASTWHVMAKGYMEHDQ 305
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272
I K VE +K+ + + WKP + CL+
Sbjct: 306 IPKTVEMLKRAVNVGR---DWKPDPILVNTCLE 335
>gi|297803972|ref|XP_002869870.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp.
lyrata]
gi|297315706|gb|EFH46129.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp.
lyrata]
Length = 480
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/295 (39%), Positives = 183/295 (62%), Gaps = 7/295 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M++ G++ T YN M+ +YY+ KLD LM EME+NG+++D++T RLSAYA
Sbjct: 160 VEAMKEAGVSMDTRCYNLMMNMYYQMNVHGKLDDLMLEMEQNGVSFDQFTLSIRLSAYAA 219
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
AS+ EGI+K + + + A+DW IY+ N + KV L+D+A MLKK EE + N
Sbjct: 220 ASNIEGIEKTIEKISSMSETAIDWTIYSAAANAFLKVELIDEATMMLKKCEEFVNEDSGN 279
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
A++ +L LYG+ G+K+D+ R+W +K+ KV N+GY+ +ISS LK D+E EK+F +W
Sbjct: 280 EAFHTLLKLYGETGRKEDLSRVWLRFKEERKVFNSGYKIMISSALKFGDIELVEKVFNQW 339
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATGYRQNS 238
ES+ L YD RIPN LI+ YC L EKAE L+ +K +G + + ++ LA Y +
Sbjct: 340 ESEKLSYDFRIPNLLINFYCEKDLTEKAELLL--KKAEGNRVSPPMDAYICLANIYLEGD 397
Query: 239 QIHKAVEAMKKVLAA-YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+I KA EA+++ ++ +T + + E L +CL + GD G E F E+++
Sbjct: 398 EISKATEAIERAVSTQIETEQRLEAQRELLNSCLACLRGNGD--GRERFGEVMDS 450
>gi|302143279|emb|CBI21840.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 175/321 (54%), Gaps = 56/321 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+MRD+G +T + YN ML LY + G EKLD+LM EMEENGI D +TYC RL+AY
Sbjct: 159 MQEMRDMGFVKT-LSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCA 217
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD EG++K+L +E DP V DW Y NG
Sbjct: 218 TSDMEGMEKLLMKLETDPAVNSDWNAYIVAANG--------------------------- 250
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y K D L +KAV++L N SLLKLDD++ AEK FEEW
Sbjct: 251 ------------YLKAD-------LKEKAVEMLKN-------SLLKLDDMDGAEKTFEEW 284
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S +D R+PN LI YC+ GLLEKAE LV+ +G E +W LA GY +N+Q+
Sbjct: 285 LSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQM 344
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAV+ +KK L A T WKP+ +L+ACL+Y K +GD+ AEN I LL ++ +
Sbjct: 345 EKAVDTLKKALLA--TSQGWKPNPVTLSACLEYLKGKGDVEEAENLIRLLREQSLVSAYD 402
Query: 301 QDKLLDNVQNGKSNLETLREL 321
D+L++ +++ + T+ ++
Sbjct: 403 SDRLVNYIRSEEPGSSTIAQM 423
>gi|255573349|ref|XP_002527601.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533018|gb|EEF34782.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 502
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 193/336 (57%), Gaps = 8/336 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKM++LG A + + YN ++ LY +TG EK+ ++ EM+ENGIT D ++Y +S+ A
Sbjct: 159 MQKMKELGFASSPLNYNDLMCLYTRTGQLEKVTDVLSEMKENGITPDLFSYRICMSSCAA 218
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD +G+++IL ME ++++DWV Y+TV + Y K L +KAL LKK E+++ +
Sbjct: 219 RSDLKGVEEILEEMENQSHISIDWVTYSTVASIYVKASLKEKALIYLKKCEQKVNRDAL- 277
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++L G KD+V+R+W L K K K +N Y ++ +L+KL++LE A+K+ +E
Sbjct: 278 -GYNHLISLNASLGIKDEVMRLWGLVKTKCKKQVNRDYITMLGALVKLEELEEADKLLQE 336
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES CYD R+PN L+ YC+ GL+EKAE ++ K + SW +A GY
Sbjct: 337 WESSCQCYDFRVPNVLLIGYCQQGLIEKAEAMLKDIVKKQKNPTPNSWAIIAAGYVNKQN 396
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA MK+ L W+P +++ L + + GD+ E F+ LL K +P D
Sbjct: 397 MEKAFNCMKEALTVQAENKGWRPKANLISSILSWLGENGDVEDVEAFVNLLETK--VPKD 454
Query: 300 --LQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
+ L+ ++ GK L + N + +EET
Sbjct: 455 REIYHTLIKAYIRGGKQVDGVLENMTANKIDEDEET 490
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-EL 145
Y + N Y + GL+DK+L ++K +E + A YN ++ LY + G+ + V + E+
Sbjct: 139 YGALLNCYVREGLVDKSLYHMQKMKE-LGFASSPLNYNDLMCLYTRTGQLEKVTDVLSEM 197
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGL 204
+ + YR +SS DL+ E+I EE E+Q+ + D + + +Y + L
Sbjct: 198 KENGITPDLFSYRICMSSCAARSDLKGVEEILEEMENQSHISIDWVTYSTVASIYVKASL 257
Query: 205 LEKA 208
EKA
Sbjct: 258 KEKA 261
>gi|356542147|ref|XP_003539532.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Glycine max]
Length = 483
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 177/317 (55%), Gaps = 4/317 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K+++L T N ML+LY K G +EKLD LM EM+E I + TY RL+AY
Sbjct: 146 LKKIKELHPVNITACCNMMLELYAKKGKYEKLDRLMQEMKEKDIC-NAGTYTIRLNAYVI 204
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A+D +G++K+L ME DP +DW Y T NGY KV +K AMLKKSE +G
Sbjct: 205 ATDIKGMEKLLMQMEVDPMATVDWYTYMTAANGYRKVHNFEKVAAMLKKSEHVARGKTKR 264
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY I T+Y G KD+V R+W + K N Y ++SSL+KLDD++ AEKI EEW
Sbjct: 265 LAYESIQTMYAIIGNKDEVHRLWNMCTSPKKP-NKSYIRMLSSLVKLDDIDGAEKILEEW 323
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES +D RIPN +I YC+ G +KAE + G+ + ++W LA GY + +
Sbjct: 324 ESVHENFDVRIPNLMISAYCKWGQFDKAEAYIRRLLDGGKHLDGRTWDRLACGYNAGNDM 383
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
AV+AMKK ++ L +P +L AC+ Y K++GD+ A ++L + I
Sbjct: 384 ENAVQAMKKAVST--NLAGRRPDPFTLVACVKYLKEKGDLDLALEILKLCIENSHISVTS 441
Query: 301 QDKLLDNVQNGKSNLET 317
D L+ V++ +T
Sbjct: 442 YDGLVSYVRSETETPDT 458
>gi|356547012|ref|XP_003541912.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20710, mitochondrial-like [Glycine max]
Length = 482
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 175/310 (56%), Gaps = 3/310 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+ +++L T N ML+LY K G +EKLD LM EM+E I + TY RL+AY
Sbjct: 146 MKXIKELHPVNITPCCNMMLELYAKKGKYEKLDRLMQEMKEKDIC-NASTYTIRLNAYVV 204
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D +G++K+L MEADP +DW Y T NGY +V +K MLKKSE +G
Sbjct: 205 VTDIKGMEKLLMQMEADPVATVDWYTYMTAANGYRRVHNFEKVAEMLKKSEHLARGNTRR 264
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
A+ I T+Y G KD+V R+W + K N+ Y ++SSL KLD+++ AEKI EEW
Sbjct: 265 LAFESIQTMYAIIGNKDEVYRLWNMCTSLKKPNNSSYIRMLSSLAKLDEIDGAEKILEEW 324
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES+ +D RIPN +I YC+ G +KAE + G+++ ++W LA GY+ + +
Sbjct: 325 ESKYANFDVRIPNLMISAYCKWGQFDKAEAYIRRLLDGGKQLDGRTWDRLACGYKAGNDM 384
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAV+AMKK A + L +P +L AC+ Y K++GD+ A ++L + I
Sbjct: 385 EKAVQAMKK--AVSKNLGGRRPDPFTLVACVKYLKEKGDLDLALEILKLCIENSHISVTS 442
Query: 301 QDKLLDNVQN 310
D L V +
Sbjct: 443 YDGLSSYVHS 452
>gi|225461407|ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial [Vitis vinifera]
Length = 504
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 192/336 (57%), Gaps = 8/336 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM++LG A T + YN ++ LY T EK+ ++ EM+ENGI+ D ++Y +++Y
Sbjct: 161 LQKMKELGFASTPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGA 220
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD ++KIL ME+ ++ +DW+ Y+ V N Y K GL +KAL LKK+E ++ +
Sbjct: 221 RSDLNSMEKILEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKLHKDPL- 279
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++LY G K +++R+WE K A K ++N Y ++ SL+KL +LE E + +E
Sbjct: 280 -GYNHLISLYASLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLKE 338
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES CYD R+PN L+ +C+ GL+EKAE+++ +G+ SW +A GY +
Sbjct: 339 WESSGNCYDFRVPNTLLIGFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQN 398
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA E MK+ +A W+P + +++ L + D D+ E F+ L K IP D
Sbjct: 399 MEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSAL--KAVIPMD 456
Query: 300 LQ---DKLLDNVQNGKSNLETLRELYGNSLAGNEET 332
+ ++ +++ GK L + + + +EET
Sbjct: 457 REMYHAQIRASIRAGKEVDGILDSMKADKIDEDEET 492
>gi|302143027|emb|CBI20322.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 192/336 (57%), Gaps = 8/336 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM++LG A T + YN ++ LY T EK+ ++ EM+ENGI+ D ++Y +++Y
Sbjct: 161 LQKMKELGFASTPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGA 220
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD ++KIL ME+ ++ +DW+ Y+ V N Y K GL +KAL LKK+E ++ +
Sbjct: 221 RSDLNSMEKILEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKLHKDPL- 279
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++LY G K +++R+WE K A K ++N Y ++ SL+KL +LE E + +E
Sbjct: 280 -GYNHLISLYASLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLKE 338
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES CYD R+PN L+ +C+ GL+EKAE+++ +G+ SW +A GY +
Sbjct: 339 WESSGNCYDFRVPNTLLIGFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQN 398
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA E MK+ +A W+P + +++ L + D D+ E F+ L K IP D
Sbjct: 399 MEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSAL--KAVIPMD 456
Query: 300 LQ---DKLLDNVQNGKSNLETLRELYGNSLAGNEET 332
+ ++ +++ GK L + + + +EET
Sbjct: 457 REMYHAQIRASIRAGKEVDGILDSMKADKIDEDEET 492
>gi|147807263|emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]
Length = 506
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 189/336 (56%), Gaps = 7/336 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM+++G A + + YN ++ LY G EK+ ++ EM+++ + D ++Y +++YA
Sbjct: 163 LQKMKEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSHVYPDNFSYRICINSYAA 222
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD +G++K+L ME P++ +DW YA N Y K GL DKA+ LKKSEE++ +
Sbjct: 223 QSDIQGMEKVLKEMERQPHIVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERL-DKRDG 281
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++LY G K +VLR+W L K A K +N Y ++ SL++L +LE AEK+ E
Sbjct: 282 LGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLRE 341
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES CYD R+PN +I Y GL EKAE ++ KG+ SW +A+GY +
Sbjct: 342 WESSGNCYDFRVPNIVIIGYSEKGLFEKAEAMLKELMEKGKITTPDSWGTVASGYMDEGE 401
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KAVE MK ++ + KP+ +A L + D+G + E F+ L + IP +
Sbjct: 402 MEKAVECMKAAISLHVNNKGRKPNSRVIAGILSWLGDKGRVEDVEAFVGSL--RIVIPMN 459
Query: 300 LQ---DKLLDNVQNGKSNLETLRELYGNSLAGNEET 332
+ ++ N++ GK L + + + +EET
Sbjct: 460 RRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEET 495
>gi|224125490|ref|XP_002329818.1| predicted protein [Populus trichocarpa]
gi|222870880|gb|EEF08011.1| predicted protein [Populus trichocarpa]
Length = 494
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 177/300 (59%), Gaps = 4/300 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM+++G A++++ YN ++ LY G EK+ +++EM+EN ++ D ++Y +++Y
Sbjct: 153 LQKMKEMGFAKSSLSYNDIMCLYTNVGQHEKVPQVLNEMKENNVSPDNFSYRLCMNSYGA 212
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D EG++K+L ME P++ +DW YA + Y K GL DKA+ LKKSE ++ K
Sbjct: 213 RGDLEGMEKMLNEMEHQPDIVVDWNSYAVAASSYIKGGLTDKAIDSLKKSETRL-DKKDG 271
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN +++LY G+K +VLR+W+L K + +N Y N+++SL+KLD+ E EK+ +E
Sbjct: 272 TGYNHLISLYATLGEKTEVLRLWDLEKSTCERPINKDYINIMASLVKLDEFEEVEKVLKE 331
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE+ YD R+PN LI Y GL EKA+ L+ + KG+ W +A G+ ++
Sbjct: 332 WEASGNFYDVRVPNTLIIGYSGKGLYEKAKALLENLTEKGKATLPNIWGKVAAGFFDKNE 391
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA MK L Y+ +WKP+ + + L + DEG AE F+ L K IP +
Sbjct: 392 VAKAFSCMKAALCLYEENKEWKPNQKVITGILSWLGDEGSAEDAEAFVSSL--KNVIPMN 449
>gi|224077120|ref|XP_002305141.1| predicted protein [Populus trichocarpa]
gi|222848105|gb|EEE85652.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 187/336 (55%), Gaps = 7/336 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM+++G A++++ YN ++ LY G EK+ +++EM+EN + D ++Y ++++
Sbjct: 153 LQKMKEMGFAKSSLTYNDIMCLYTNVGQHEKVPQVLNEMKENNVLPDNFSYRLCINSFGA 212
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D EG++KIL ME P++ +DW YA N Y L DKA+ LKKSE ++ K
Sbjct: 213 RDDLEGMEKILNEMEHQPDIVMDWNTYAVAANFYIIGDLTDKAIDTLKKSEARL-DKKDG 271
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN +++LY K G K +VLR+W+L K A + +N Y ++ SLLKL + E AEK+ +E
Sbjct: 272 TGYNHLISLYAKLGNKTEVLRLWDLEKSACERHINKDYIIMMESLLKLSEFEEAEKMLKE 331
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+PN LI Y R GL EKA+ L+ + KG+ SW +A G+ S+
Sbjct: 332 WESSGNFYDVRVPNTLIIGYSRKGLCEKAKALLENLTEKGKMTLPNSWGIVAAGFFDKSE 391
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA MK L Y WKP+ + L + DEG AE F+ L K IP +
Sbjct: 392 VAKAFSCMKAALCLYVENKGWKPNQRVINGILSWLGDEGSAEDAEAFVSSL--KTVIPVN 449
Query: 300 LQ---DKLLDNVQNGKSNLETLRELYGNSLAGNEET 332
+ L N++ GK L + ++ +EET
Sbjct: 450 REMYHAVLKANIRAGKEVHRLLDGMKTYNIKEDEET 485
>gi|359483464|ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Vitis vinifera]
Length = 506
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 187/336 (55%), Gaps = 7/336 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM+++G A + + YN ++ LY G EK+ ++ EM+++ + D ++Y +++Y
Sbjct: 163 LQKMKEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSNVYPDNFSYRICINSYGA 222
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD +G++ +L ME P++ +DW YA N Y K GL DKA+ LKKSEE++ +
Sbjct: 223 QSDIQGMENVLKEMERQPHIVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERLD-KRDG 281
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++LY G K +VLR+W L K A K +N Y ++ SL++L +LE AEK+ E
Sbjct: 282 LGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAEKVLRE 341
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES CYD R+PN +I Y GL EKAE ++ KG+ SW +A+GY +
Sbjct: 342 WESSGNCYDFRVPNIVIIGYSEKGLFEKAEAMLKELMEKGKITTPNSWGTVASGYMDEGE 401
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KAVE MK ++ + KP+ +A L + D+G + E F+ L + IP +
Sbjct: 402 MEKAVECMKAAISLHVNNKGRKPNSRVIAGILSWLGDKGRVEDVEAFVGSL--RIVIPMN 459
Query: 300 LQ---DKLLDNVQNGKSNLETLRELYGNSLAGNEET 332
+ ++ N++ GK L + + + +EET
Sbjct: 460 RRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEET 495
>gi|148909871|gb|ABR18022.1| unknown [Picea sitchensis]
Length = 561
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 197/337 (58%), Gaps = 6/337 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++++DLG +T Y M+ LY T FEK+ ++ EM++ GI+ D + Y + +YA
Sbjct: 216 MEELKDLGFIKTAFPYTEMMTLYMNTEQFEKVPLVIQEMKKKGISLDIHCYNIWMRSYAA 275
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE---EQIKGA 117
SD + + ++ +E D N+ DW IY+T+ N Y +LDKA + LK+ E ++I+
Sbjct: 276 LSDMDQVAEVFNEIERDDNINTDWSIYSTLANIYINAKVLDKAGSALKEMENKMKEIETK 335
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKI 176
K AYN +++L+G+ G KD+V RIW+ ++ A K+ N Y ++SSL+ + D+E AE
Sbjct: 336 KDQLAYNHLISLHGRLGNKDEVYRIWQSFELAFPKMTNRSYVCLLSSLVGMGDIEGAEVF 395
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
++WES D+RI L++ Y G L+KAE L+ KG + + K+W LA GY Q
Sbjct: 396 IKKWESMKTFDDSRIYYALLNAYIEKGWLQKAELLLERVVDKGGKPNAKTWETLAEGYIQ 455
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
N QIHKA+EAMK+ L+ + W+P ++ A L +F+ +GD+ AE F ++L F+
Sbjct: 456 NEQIHKAMEAMKRSLSI-EGNSPWQPKSVNVLALLKHFEKQGDVKSAEEFFKILRGVKFV 514
Query: 297 PTDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
T++ + LL V GK + ++++ +EET
Sbjct: 515 STEIYNSLLRTYVYVGKVPPRISELMLEDNVSPDEET 551
>gi|224114960|ref|XP_002316903.1| predicted protein [Populus trichocarpa]
gi|222859968|gb|EEE97515.1| predicted protein [Populus trichocarpa]
Length = 437
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 171/294 (58%), Gaps = 3/294 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM++LG T + YN ++ LY TG EK+ ++ +M+ENGI+ D ++Y L +Y +
Sbjct: 124 VQKMKELGFFSTALNYNDLMCLYVNTGLLEKVPDVLSDMKENGISPDLFSYRICLKSYGE 183
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD + ++KIL ME+ ++++DW +ATV N Y + GL +KAL LKK EE++ +
Sbjct: 184 RSDFDNVEKILREMESQSHISMDWRTFATVANIYLEAGLKEKALVYLKKCEEKVNKNAL- 242
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++LY G KD+++R+WEL K K LN Y ++ SL+KL LE AEK+ ++
Sbjct: 243 -GYNHLISLYASLGNKDEMMRLWELAKANCKKQLNRDYITILGSLVKLGHLEEAEKLLQD 301
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+PN ++ Y R GL EKAE ++ K + + SW ++ GY
Sbjct: 302 WESSCQYYDFRVPNVVLIGYSRKGLPEKAEAMLQDIIEKQKMKNPSSWSIISAGYMDKQN 361
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+ KA E MK+ LAA W+P ++ L++ D D E F+ LL K
Sbjct: 362 MEKAFECMKEALAAETENNGWRPKPAMISNILNWLGDNRDAQEVEAFVGLLETK 415
>gi|255556039|ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541717|gb|EEF43265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 485
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 185/333 (55%), Gaps = 3/333 (0%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
QKM+++GLA + + YN ++ LY G +EK+ ++ EM+EN I+ D ++Y +++Y
Sbjct: 139 QKMKEMGLASSPLAYNDIMCLYINLGLYEKVLHVLTEMKENKISPDNFSYRICINSYGAR 198
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
SD +G++K+L ME A+DW YA V N Y K GL DKA+ L+KSEE++ K
Sbjct: 199 SDIQGMEKVLNEMECRLGNAMDWNTYAVVANFYIKAGLADKAVDALRKSEEKL-DKKDGI 257
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN +++LY G K +VLRIW+L K K +N + ++ SL+KL DLE AEK+ +EW
Sbjct: 258 GYNHLISLYATLGIKSEVLRIWDLQKSVCKRRINRDFVTMLESLVKLGDLEEAEKVLKEW 317
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES YD RIPN ++ Y +NGL EKAE + KGR SW +A+GY + +
Sbjct: 318 ESSGNFYDVRIPNIVVVGYSKNGLHEKAEASLEALMEKGRATTPNSWAMIASGYLEKGEK 377
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KA E MK + WKP+ + L + DEG E F+ L+ + +
Sbjct: 378 AKAFECMKAAFSLNVEKKGWKPNPRVVMDILIWLGDEGSPEDVEAFVASLSVAIPLNRQI 437
Query: 301 QDKLLD-NVQNGKSNLETLRELYGNSLAGNEET 332
LL +++G+ E L + + + +EET
Sbjct: 438 YHALLKAKIRSGRDAHEILDRMKTDKIDEDEET 470
>gi|115482784|ref|NP_001064985.1| Os10g0501300 [Oryza sativa Japonica Group]
gi|22165054|gb|AAM93671.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432901|gb|AAP54477.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113639594|dbj|BAF26899.1| Os10g0501300 [Oryza sativa Japonica Group]
Length = 513
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 187/336 (55%), Gaps = 9/336 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR +G+A + YN+M+ LY + G E++DS+ MEE GI D +T +SAYAD
Sbjct: 174 FENMRGMGMA-NSYAYNAMMNLYSQIGQVERVDSMYKAMEEGGIVPDIFTIDNLVSAYAD 232
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E I+K+L +A N + W +A VG + K G+ ++AL ++SE++I K
Sbjct: 233 VEDVEAIEKVLE--KASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQESEKRITARKDG 290
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVISSLLKLDDLESAEKIF 177
AY +LT+Y +V RIW++Y+ V N Y IS LLK++D+ AEK +
Sbjct: 291 RVAYGFLLTMYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVGAEKAY 350
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EEWES+ + +D+R+ N L+ YC+ GL+EKAE LV+ KGR + +WY LA GY +
Sbjct: 351 EEWESKHVYHDSRLINILLTAYCKEGLMEKAEALVDQFIKKGRTLFSNTWYKLAGGYFKV 410
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Q+ KA + KK LA+ +WKP + ++ ++YF ++ ++ AE LL +
Sbjct: 411 GQVSKAADLTKKALASASN--EWKPDLANVLMSINYFAEQKNVEAAEEMASLLQRLVPLT 468
Query: 298 TDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
D+ LL V G+ + L + + + +EET
Sbjct: 469 RDVYHGLLKTYVNAGEPASDLLDRMKKDGIEADEET 504
>gi|125575304|gb|EAZ16588.1| hypothetical protein OsJ_32060 [Oryza sativa Japonica Group]
Length = 475
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 187/336 (55%), Gaps = 9/336 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR +G+A + YN+M+ LY + G E++DS+ MEE GI D +T +SAYAD
Sbjct: 136 FENMRGMGMA-NSYAYNAMMNLYSQIGQVERVDSMYKAMEEGGIVPDIFTIDNLVSAYAD 194
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E I+K+L +A N + W +A VG + K G+ ++AL ++SE++I K
Sbjct: 195 VEDVEAIEKVLE--KASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQESEKRITARKDG 252
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVISSLLKLDDLESAEKIF 177
AY +LT+Y +V RIW++Y+ V N Y IS LLK++D+ AEK +
Sbjct: 253 RVAYGFLLTMYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVGAEKAY 312
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EEWES+ + +D+R+ N L+ YC+ GL+EKAE LV+ KGR + +WY LA GY +
Sbjct: 313 EEWESKHVYHDSRLINILLTAYCKEGLMEKAEALVDQFIKKGRTLFSNTWYKLAGGYFKV 372
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Q+ KA + KK LA+ +WKP + ++ ++YF ++ ++ AE LL +
Sbjct: 373 GQVSKAADLTKKALASASN--EWKPDLANVLMSINYFAEQKNVEAAEEMASLLQRLVPLT 430
Query: 298 TDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
D+ LL V G+ + L + + + +EET
Sbjct: 431 RDVYHGLLKTYVNAGEPASDLLDRMKKDGIEADEET 466
>gi|357140786|ref|XP_003571944.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Brachypodium distachyon]
Length = 497
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 189/331 (57%), Gaps = 5/331 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+++G+ ++ YN M+KLY++TG EK+ ++ MEE+GI D +T L+ Y +
Sbjct: 162 EMQEMGMM-SSYPYNVMMKLYWETGQVEKVRTMYRAMEESGIKPDLFTIDILLTVYKASG 220
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D EGI+++L + N+ + W YA V + + K GL KAL L++SE++I A
Sbjct: 221 DLEGIEEVLEKAKPRENL-VGWHSYAIVASAFMKAGLQGKALQALQESEKRIDPKNGRVA 279
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
Y +L++ G + +V RIW++YK V N+ Y IS+LLK++D + AEK F EWES
Sbjct: 280 YGFLLSMCADSGMRSEVDRIWDVYKSKVPTCNSMYMCRISALLKMNDTDEAEKAFREWES 339
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + +D R+ N L++ YC GL+EKAE LV+ KGR + +WY LA G+ ++ Q+ K
Sbjct: 340 RFVHHDFRLINLLLNGYCAEGLMEKAEALVDEAITKGRMPYANTWYKLAAGFFKDGQVLK 399
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD 302
AV+ +K LA+ + W+P + ++ LD+F ++ ++ AE LL + D+
Sbjct: 400 AVDLTRKALASATS--GWEPDLTNVLMSLDHFMEQKNVEAAEEMASLLRSLVPLTRDVYH 457
Query: 303 KLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
LL V G + L + + ++ET
Sbjct: 458 SLLKTYVHAGMPVSDLLDRMNEDGFEADQET 488
>gi|356555227|ref|XP_003545936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Glycine max]
Length = 486
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 171/302 (56%), Gaps = 4/302 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM+DLG A + + YN ++ LY G EK+ ++ EM++N + D ++Y +++Y
Sbjct: 145 LQKMKDLGFASSPLTYNDIMCLYTNIGQHEKVPDVLREMKQNQVLPDNFSYRICINSYGV 204
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD G++++L ME PN+ +DW Y+ N Y K GL A+ L+KSEE++ K
Sbjct: 205 RSDFGGVERVLKEMETQPNIVMDWNTYSIAANFYIKAGLTRDAVCALRKSEERLDN-KDG 263
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++LY + G K++V+RIW+L K A K +N + ++ SL+KL +L+ AEKI +E
Sbjct: 264 QGYNHLISLYAQLGLKNEVMRIWDLEKNACKRCINRDFTTLLESLVKLGELDEAEKILKE 323
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES CYD IP+ +I Y + GL EKA ++ + K + W +A GY +
Sbjct: 324 WESSDNCYDFGIPSIVIIGYSQKGLHEKALAMLEELQNKEKVTTPNCWSIVAGGYIHKGE 383
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA + K L+ Y WKP+ + +A L + D G + AE + LL + +P +
Sbjct: 384 MEKAFKCFKTALSLYVENKGWKPNAKVIAELLRWIGDNGSVEDAEVLVSLL--RNAVPVN 441
Query: 300 LQ 301
Q
Sbjct: 442 RQ 443
>gi|22165052|gb|AAM93669.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432900|gb|AAP54476.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125575303|gb|EAZ16587.1| hypothetical protein OsJ_32059 [Oryza sativa Japonica Group]
Length = 545
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 190/337 (56%), Gaps = 11/337 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KMR +G+A ++ YN M++LY + G E++ S+ MEE+GI D +T T ++AY
Sbjct: 206 FEKMRGMGMA-SSYAYNVMMRLYLQDGQVERVHSMHRTMEESGIVADVFTTDTLVAAYVV 264
Query: 61 ASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A D E I+K+L +AD N + W YAT+G + G+ ++AL ++SE++I
Sbjct: 265 AEDIEAIEKVLE--KADTCNDLMTWHSYATIGKVLMQSGMEERALQAFQESEKKIAKKSN 322
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVISSLLKLDDLESAEKIF 177
AY +LT+Y G +V RIW++YK V N+ Y IS LLK++D+ AEK +
Sbjct: 323 RVAYGFLLTMYADLGMNSEVDRIWDVYKSKVPASACNSMYMCRISVLLKMNDIVGAEKAY 382
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EEWES+ + +D+R+ N L+ YC+ GL+EKAE LV+ KGR +WY LA GY +
Sbjct: 383 EEWESKHVYHDSRLINLLLTAYCKEGLMEKAEALVDQFVKKGRTPFGNTWYKLAGGYFKV 442
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Q KA + KK LA+ +W P + ++ L+YF ++ ++ AE LL + P
Sbjct: 443 GQASKAADLTKKALASGSN--EWTPDLTNVLMSLNYFAEQKNVEAAEEMASLLQ-RLITP 499
Query: 298 T-DLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
T D+ LL V GK + L + + + +EET
Sbjct: 500 TRDIYHGLLKTYVNAGKPVSDLLDRMKKDGMEADEET 536
>gi|125532539|gb|EAY79104.1| hypothetical protein OsI_34210 [Oryza sativa Indica Group]
Length = 513
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 184/336 (54%), Gaps = 9/336 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR +G+A + YN+M+ LY + G E++ S+ MEE GI D +T +SAYAD
Sbjct: 174 FENMRGMGMA-NSYAYNAMMNLYSQIGQVERVHSMYKSMEEGGIVPDIFTIDNLVSAYAD 232
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E I+K+L +A N + W +A VG + K G+ ++AL ++SE++I K
Sbjct: 233 VEDVEAIEKVLE--KASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQESEKRITARKDG 290
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVISSLLKLDDLESAEKIF 177
AY +LT+Y +V RIW++Y+ V N Y IS LLK++D+ AEK +
Sbjct: 291 RVAYGFLLTMYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVGAEKAY 350
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EEWES+ + +D+R+ N L+ YC+ GL+EKAE LV+ KGR +WY LA GY +
Sbjct: 351 EEWESKHVYHDSRLINILLTAYCKEGLMEKAEALVDQFIKKGRTPFSNTWYKLAGGYFKV 410
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Q KA + KK LA+ +WKP + ++ ++YF ++ ++ AE LL +
Sbjct: 411 GQASKAADLTKKALASASN--EWKPDLANVLMSINYFAEQKNVEAAEEMASLLQRLVPLT 468
Query: 298 TDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
D+ LL V G+ + L + + + +EET
Sbjct: 469 RDVYHGLLKTYVNAGEPASDLLDRMKKDGIEADEET 504
>gi|357146877|ref|XP_003574143.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Brachypodium distachyon]
Length = 511
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 168/305 (55%), Gaps = 2/305 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM++LG +++ YN+++ LY G EK+ S++ EM+ NGI D ++Y +++Y
Sbjct: 182 FQKMKELGFVFSSLPYNNLMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGA 241
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME +P + +DW YA + N Y K L DKA++ L+K+E +I K +
Sbjct: 242 RADFFGMENTLEEMECEPQIVVDWNTYAVLANNYIKGNLRDKAISALQKAEAKID-IKDS 300
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++LYG+ G K +V R+W L K +N Y +++ LLKLD++E AE + +E
Sbjct: 301 DTYNHLMSLYGQLGDKSEVKRLWALQMSNCKRHINKDYTTMLAMLLKLDEIEEAEALLKE 360
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES +D +PN L+ Y + LL+KAE L++ KG+ SW +A GY +
Sbjct: 361 WESSENAFDFHVPNVLLTGYRQKDLLDKAEALLDDFLKKGKMPTSTSWAIVAIGYAEKGD 420
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA E K L Y W P + L Y DE ++ E F+ LL + +D
Sbjct: 421 VAKAYELTKNALCVYAPNSGWIPRPAMIEMILKYLGDECNLKDVETFVHLLQAAVPMNSD 480
Query: 300 LQDKL 304
+ D L
Sbjct: 481 MTDAL 485
>gi|242096946|ref|XP_002438963.1| hypothetical protein SORBIDRAFT_10g029040 [Sorghum bicolor]
gi|241917186|gb|EER90330.1| hypothetical protein SORBIDRAFT_10g029040 [Sorghum bicolor]
Length = 502
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 6/325 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM++LG T + YN+++ LY E++ S+M EM+ NGI D ++Y +++Y
Sbjct: 175 FQKMKELGFVFTALPYNNLMSLYTNIEQHERVPSVMAEMKSNGIVPDNFSYRICINSYGT 234
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME +P + +DW Y V + Y K L +KA + LKK+E ++ G K
Sbjct: 235 RADFFGLENTLEEMECEPQIVVDWNTYTVVASQYIKGDLREKAYSALKKAEAKM-GIKDL 293
Query: 121 SAYNVILTLYGKYGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+AY +++LYG G K +V R+W + + LN Y N+++ L+KLD++ AE + +E
Sbjct: 294 AAYRHLISLYGHLGDKSEVKRLWAVQMSNCQRHLNTDYTNILAVLVKLDEIAEAEDLLKE 353
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE+ +D ++PN L+ YC+ GLL+KAE L++ +KG+ SW +A+GY +
Sbjct: 354 WETSKNEFDFKVPNVLLTWYCQKGLLDKAEALLDGFLIKGKMPPSTSWEIVASGYTEKGD 413
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A E K L Y W P + L Y DE ++ E FI+LL + +D
Sbjct: 414 VARAYELTKNALYMYAPNSGWVPEPSMIEMILKYLGDEREVKDVEAFIDLLKVAVPMNSD 473
Query: 300 LQDKL----LDNVQNGKSNLETLRE 320
+ + L + G+ E LRE
Sbjct: 474 MTEALSRARSREEKKGEGAREALRE 498
>gi|125559056|gb|EAZ04592.1| hypothetical protein OsI_26742 [Oryza sativa Indica Group]
Length = 402
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 169/305 (55%), Gaps = 2/305 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM++LG +T+ YN+++ LY G EK+ S++ EM+ NGI D ++Y +++Y
Sbjct: 67 FQKMKELGFVFSTLPYNNIMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGT 126
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME +P + +DW YA V + Y K + +KA + LKK+E +I K +
Sbjct: 127 RADFFGMENTLEEMECEPKIVVDWNTYAVVASNYIKGNIREKAFSALKKAEAKI-NIKDS 185
Query: 121 SAYNVILTLYGKYGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+YN +++LYG G K +V R+W L + +N Y +++ L+KL+++E AE + +E
Sbjct: 186 DSYNHLISLYGHLGDKSEVNRLWALQMSNCNRHINKDYTTMLAVLVKLNEIEEAEVLLKE 245
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES +D ++PN L+ Y + LL+KAE L++ KG+ SW +A GY +
Sbjct: 246 WESSGNAFDFQVPNVLLTGYRQKDLLDKAEALLDDFLKKGKMPPSTSWAIVAAGYAEKGD 305
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KA E K L Y W P + L Y DEGD+ E F++LL + +D
Sbjct: 306 AAKAYELTKNALCVYAPNTGWIPRPGMIEMILKYLGDEGDVEEVEIFVDLLKVAVPLNSD 365
Query: 300 LQDKL 304
+ D L
Sbjct: 366 MTDAL 370
>gi|222637397|gb|EEE67529.1| hypothetical protein OsJ_24995 [Oryza sativa Japonica Group]
Length = 491
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 169/305 (55%), Gaps = 2/305 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM++LG +T+ YN+++ LY G EK+ S++ EM+ NGI D ++Y +++Y
Sbjct: 173 FQKMKELGFVFSTLPYNNIMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGT 232
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME +P + +DW YA V + Y K + +KA + LKK+E +I K +
Sbjct: 233 RADFFGMENTLEEMECEPKIVVDWNTYAVVASNYIKGNIREKAFSALKKAEAKIN-IKDS 291
Query: 121 SAYNVILTLYGKYGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+YN +++LYG G K +V R+W L + +N Y +++ L+KL+++E AE + +E
Sbjct: 292 DSYNHLISLYGHLGDKSEVNRLWALQMSNCNRHINKDYTTMLAVLVKLNEIEEAEVLLKE 351
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES +D ++PN L+ Y + LL+KAE L++ KG+ SW +A GY +
Sbjct: 352 WESSGNAFDFQVPNVLLTGYRQKDLLDKAEALLDDFLKKGKMPPSTSWAIVAAGYAEKGD 411
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KA E K L Y W P + L Y DEGD+ E F++LL + +D
Sbjct: 412 AAKAYELTKNALCVYAPNTGWIPRPGMIEMILKYLGDEGDVEEVEIFVDLLKVAVPLNSD 471
Query: 300 LQDKL 304
+ D L
Sbjct: 472 MTDAL 476
>gi|297799892|ref|XP_002867830.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313666|gb|EFH44089.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 492
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 183/335 (54%), Gaps = 4/335 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM+++G +++ YN+++ LY G EK+ ++ EM+E + D Y++ ++A+
Sbjct: 149 FQKMKEMGFVSSSLTYNNIMCLYTNIGQHEKVPGVLDEMKEENVAPDNYSFRICINAFGA 208
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD E I IL ME P+ +DW YA Y G D+A+ +LK SE +++ K
Sbjct: 209 MSDLERIGGILRDMERRPDFTMDWNTYAVAAKFYIDGGDCDRAVELLKMSEYRLE-KKDG 267
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++TLY + G K +VLR+WEL K+A K +N Y V+ SL+K+D L+ AE + E
Sbjct: 268 EGYNHLITLYARLGNKIEVLRLWELEKEACKRRINQDYLTVLQSLMKIDGLKEAEVVLTE 327
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES CYD R+PN +I Y + EKAE ++ +G+ +SW +AT Y +
Sbjct: 328 WESSGNCYDFRVPNTVIRGYTGKSMEEKAEAMLEDLARRGKTTTPESWGLVATAYAEKGA 387
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ A + MK L KW+P ++ + + L + EG + E+F+ L + +
Sbjct: 388 LGNAFKCMKTALGIEVENRKWRPGLKLVTSVLSWLGGEGSLKEVESFVASLRNCIGVNKQ 447
Query: 300 LQDKLLD-NVQNGKSNLET-LRELYGNSLAGNEET 332
+ L+ +++ G SN++T L+ + + + +EET
Sbjct: 448 MYHALVKADIREGGSNIDTLLKRMKDDQIETDEET 482
>gi|115473169|ref|NP_001060183.1| Os07g0598500 [Oryza sativa Japonica Group]
gi|34393591|dbj|BAC83218.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113611719|dbj|BAF22097.1| Os07g0598500 [Oryza sativa Japonica Group]
gi|215706491|dbj|BAG93347.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 169/305 (55%), Gaps = 2/305 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM++LG +T+ YN+++ LY G EK+ S++ EM+ NGI D ++Y +++Y
Sbjct: 188 FQKMKELGFVFSTLPYNNIMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGT 247
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME +P + +DW YA V + Y K + +KA + LKK+E +I K +
Sbjct: 248 RADFFGMENTLEEMECEPKIVVDWNTYAVVASNYIKGNIREKAFSALKKAEAKI-NIKDS 306
Query: 121 SAYNVILTLYGKYGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+YN +++LYG G K +V R+W L + +N Y +++ L+KL+++E AE + +E
Sbjct: 307 DSYNHLISLYGHLGDKSEVNRLWALQMSNCNRHINKDYTTMLAVLVKLNEIEEAEVLLKE 366
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES +D ++PN L+ Y + LL+KAE L++ KG+ SW +A GY +
Sbjct: 367 WESSGNAFDFQVPNVLLTGYRQKDLLDKAEALLDDFLKKGKMPPSTSWAIVAAGYAEKGD 426
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KA E K L Y W P + L Y DEGD+ E F++LL + +D
Sbjct: 427 AAKAYELTKNALCVYAPNTGWIPRPGMIEMILKYLGDEGDVEEVEIFVDLLKVAVPLNSD 486
Query: 300 LQDKL 304
+ D L
Sbjct: 487 MTDAL 491
>gi|242039187|ref|XP_002466988.1| hypothetical protein SORBIDRAFT_01g017960 [Sorghum bicolor]
gi|241920842|gb|EER93986.1| hypothetical protein SORBIDRAFT_01g017960 [Sorghum bicolor]
Length = 510
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 186/333 (55%), Gaps = 8/333 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+++G+ +++ Y SM+KLY +TG E++ ++ +MEE G+ D ++ + L+AY A
Sbjct: 169 KMQEMGM-KSSYTYTSMMKLYLETGQLERVHAMFQDMEEKGVKPDTFSVESMLAAYIAAE 227
Query: 63 DHEGIDKILTMMEADPNVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D EG+ K+L +A+P+ L W A + + K G+ +A+ L ++E +I
Sbjct: 228 DVEGVGKVLD--KANPHEKLVKWHGQALAASLFMKSGMQVRAVMALLEAERRISPKSSRI 285
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
AY +L Y G +V RIW +YK V N Y + IS+LLK++D++ AE +EWE
Sbjct: 286 AYAFLLKTYTDLGMYPEVGRIWSVYKSKVPPSNTMYLSRISALLKMNDIDGAEATLKEWE 345
Query: 182 SQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ +L Y D R+ N ++D YCR GL+EKA LV+ KGR + +WY LA G+ + ++
Sbjct: 346 TVSLRYHDFRLINLMVDAYCREGLVEKAVALVDDAIKKGRTPYANTWYKLAGGFFKTGEV 405
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KAV+ +K L + WKP + ++ L++F ++ D+ AE +L G + ++
Sbjct: 406 SKAVDMTRKALESATP--PWKPDLTNVLMSLEHFMNQKDVEAAEEIASMLQKLGPLTKEV 463
Query: 301 QDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
LL V+ GK + L + + L +EET
Sbjct: 464 YHCLLKTYVRAGKPVSDLLERMKKDGLEADEET 496
>gi|15219808|ref|NP_176276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097554|sp|O22714.1|PPR86_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g60770
gi|2462744|gb|AAB71963.1| Hypothetical protein [Arabidopsis thaliana]
gi|27754491|gb|AAO22693.1| unknown protein [Arabidopsis thaliana]
gi|28393975|gb|AAO42395.1| unknown protein [Arabidopsis thaliana]
gi|332195609|gb|AEE33730.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 491
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 188/337 (55%), Gaps = 7/337 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM++L + +++ YNS++ LY KTG EK+ +++ E++ + D YTY + A A
Sbjct: 146 LNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAA 205
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G+++++ M D VA DW Y+ + + Y GL KA L+ E ++K + +
Sbjct: 206 TNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQ--ELEMKNTQRD 263
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFE 178
+AY ++TLYG+ GK +V RIW + A+ K N Y N+I L+KL+DL AE +F+
Sbjct: 264 FTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFK 323
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
EW++ YD RI N LI Y + GL++KA L +G +++ K+W Y ++
Sbjct: 324 EWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSG 383
Query: 239 QIHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL-NDKGFI 296
+ +A+E M K ++ + KW PS E++ A + YF+ + D+ GAEN +E+L N I
Sbjct: 384 DMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNI 443
Query: 297 PTDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
++ + L+ GKS+ R L ++ NE T
Sbjct: 444 GAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEAT 480
>gi|293331503|ref|NP_001168643.1| uncharacterized protein LOC100382430 [Zea mays]
gi|223949857|gb|ACN29012.1| unknown [Zea mays]
gi|413933913|gb|AFW68464.1| hypothetical protein ZEAMMB73_255812 [Zea mays]
Length = 500
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 163/300 (54%), Gaps = 4/300 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M++LG +T+ YN ++ LY + G E++ S+M EM+ NGI D ++Y +++Y
Sbjct: 171 FRNMKELGFVFSTLPYNDLMGLYTRIGQHERVPSVMAEMKSNGIVPDNFSYRICINSYGT 230
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME +P + +DW YA V + Y K L +KA + L K+E ++ +
Sbjct: 231 RADFFGLENTLEEMECEPQIVVDWNTYAVVASNYIKGDLREKAYSALSKAEAKLDKQDPD 290
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY +++LYG G K + R+W + K +N Y N++S L+KLD++ AE + +E
Sbjct: 291 -AYRHLISLYGNLGDKSEAKRLWAVQMSNCKRYINRDYMNMLSVLVKLDEITEAEDLLKE 349
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES +D R+PN L+ Y + LL+KAE L++ KG+ SW +A GY +
Sbjct: 350 WESSQNSFDFRVPNVLLTGYRQKALLDKAEMLLDGFLKKGKTPPSTSWGIVAIGYAEKGD 409
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA E K L+ + W P L L Y DEG++ E F+ LL K +P D
Sbjct: 410 VAKAYEMTKNALSVHAPNTGWIPRPSMLEMILKYLGDEGEVKDVEAFVSLL--KAAVPVD 467
>gi|223949005|gb|ACN28586.1| unknown [Zea mays]
Length = 396
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 163/300 (54%), Gaps = 4/300 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M++LG +T+ YN ++ LY + G E++ S+M EM+ NGI D ++Y +++Y
Sbjct: 67 FRNMKELGFVFSTLPYNDLMGLYTRIGQHERVPSVMAEMKSNGIVPDNFSYRICINSYGT 126
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME +P + +DW YA V + Y K L +KA + L K+E ++ +
Sbjct: 127 RADFFGLENTLEEMECEPQIVVDWNTYAVVASNYIKGDLREKAYSALSKAEAKLDKQDPD 186
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY +++LYG G K + R+W + K +N Y N++S L+KLD++ AE + +E
Sbjct: 187 -AYRHLISLYGNLGDKSEAKRLWAVQMSNCKRYINRDYMNMLSVLVKLDEITEAEDLLKE 245
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES +D R+PN L+ Y + LL+KAE L++ KG+ SW +A GY +
Sbjct: 246 WESSQNSFDFRVPNVLLTGYRQKALLDKAEMLLDGFLKKGKTPPSTSWGIVAIGYAEKGD 305
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA E K L+ + W P L L Y DEG++ E F+ LL K +P D
Sbjct: 306 VAKAYEMTKNALSVHAPNTGWIPRPSMLEMILKYLGDEGEVKDVEAFVSLL--KAAVPVD 363
>gi|224125312|ref|XP_002329774.1| predicted protein [Populus trichocarpa]
gi|222870836|gb|EEF07967.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 25/305 (8%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+VY ++L Y + + EK + ++ + G+ + + Y
Sbjct: 30 MVYTALLNCYAREKDVEKAVATFKKLTDIGVMRSPLVFNILMYLY--------------- 74
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
+ D V DW Y + K G+++ A+ MLKK E QI + A++ +L LY +
Sbjct: 75 FQTDGEVVGDWNTYCVAADRCLKAGIMEMAMTMLKKLEGQITEKTKSIAFDTLLKLYARK 134
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
G KD++ RIW+ +K K+ N GY ++ISSLL LDD+E+AE +F++WES+ L Y R+PN
Sbjct: 135 GNKDELYRIWKSDEKRDKIYNKGYMSMISSLLMLDDIEAAEMMFKKWESRGLSYYFRVPN 194
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
LI+ YCRN LLEKA +L++H +KG E +WY LA+GY + VEAMKK A
Sbjct: 195 ILINAYCRNNLLEKAGSLIDHAMMKGSEPSADAWYSLASGYLE-------VEAMKK---A 244
Query: 254 YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKS 313
WKP E+LA+CLD+ + +GD AE FIELL + ++L ++ KS
Sbjct: 245 ILVCPGWKPIKETLASCLDHLEGKGDQNKAEEFIELLRTENIFSPVAHNRLRTYIKGLKS 304
Query: 314 NLETL 318
+ L
Sbjct: 305 QSDGL 309
>gi|326530906|dbj|BAK01251.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 511
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 168/305 (55%), Gaps = 2/305 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM++LG +++ YN+++ LY G EK+ S++ EM+ +GI D ++Y +++Y
Sbjct: 182 FQKMKELGFVFSSLPYNNLMGLYTNIGQHEKVPSVIAEMKGSGIMPDNFSYRICINSYGT 241
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME +P + +DW YA V + Y K L +KA++ LKK+E +I K +
Sbjct: 242 RADFFGMENTLEDMECEPQIVVDWNTYAVVASNYIKGNLREKAISALKKAEAKID-IKDS 300
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++LYG+ G K ++ R+W L K +N Y +++ L++LD++E AE + +E
Sbjct: 301 DTYNHLISLYGQLGDKSEMRRLWGLQMSNCKRHINKDYTTMLAMLVRLDEIEEAEALLKE 360
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES +D +PN L+ Y +L+KAE L++ KG+ SW +A GY +
Sbjct: 361 WESSENAFDFHVPNVLLTGYRHKDMLDKAEALLDDFLKKGKMPPSTSWAIVAIGYAEKGD 420
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KA E +K L Y W P + L Y DEGD+ E F++LL + +
Sbjct: 421 CAKAYELIKNALCVYVPRSGWIPRPAMIEMILKYLGDEGDLKDVETFVQLLQAAMPMNSH 480
Query: 300 LQDKL 304
+ D L
Sbjct: 481 MTDAL 485
>gi|225468646|ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770
[Vitis vinifera]
Length = 489
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++M++L L +++ YNS++ LY K G EK+ +++ E++ I D YTY + A A
Sbjct: 145 MERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAA 204
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G+++++ M+ D VA DW Y+ + + Y G+ +KA LK+ E++ +
Sbjct: 205 VNDISGVERVIEEMKRDGRVASDWTTYSNLASIYVDAGVFEKAEKALKELEKR-NACRDL 263
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+A+ ++TLYG+ G +V R+W + A K N Y N+I L+ L DL AEK F E
Sbjct: 264 TAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPGAEKCFRE 323
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N LI Y ++GLLEKAE L H + +G + + K+W + +N +
Sbjct: 324 WESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHARRRGAKPNAKTWEIFLAYHLKNRE 383
Query: 240 IHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ +AV+ + ++ + KW PS E + + +F+ E D+ GAE F+E+L
Sbjct: 384 MKQAVDCVANAISTGRGDGQKWVPSPEIIGVFMQHFEQEKDVDGAEGFLEIL 435
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137
P + + + Y + N Y K L +KA A++++ +E +K + YN ++TLY K G+ +
Sbjct: 116 PETSKNHLTYGALLNCYCKELLTEKAEALMERMKE-LKLGLSSMPYNSLMTLYTKIGQPE 174
Query: 138 DVLRIWELYKKAVKVLNNGYR-NV-ISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNF 194
+ I + K++ ++ + Y N+ + +L ++D+ E++ EE + + D +
Sbjct: 175 KIPTIIQEL-KSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSN 233
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
L +Y G+ EKAE + + + + ++ +L T Y
Sbjct: 234 LASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLY 273
>gi|297837423|ref|XP_002886593.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332434|gb|EFH62852.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 491
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 186/337 (55%), Gaps = 7/337 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM++L + +++ YNS++ LY KTG EK+ +++ E++ + D YTY + A A
Sbjct: 146 LNKMKELNITPSSMSYNSLMTLYTKTGQTEKVPAMIQELKAENVMPDSYTYNVWMRALAA 205
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G+++++ M D VA DW Y+ + + Y GL KA L+ E ++K + +
Sbjct: 206 TNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQ--ELEMKNTQRD 263
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFE 178
+AY ++TLYG+ GK +V RIW + A+ K N Y N+I L+KL+DL AE +F+
Sbjct: 264 FTAYQFLITLYGRLGKLTEVYRIWRSLRLAMPKTSNVAYLNMIQVLVKLNDLPGAETLFK 323
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
EW++ YD RI N LI Y + GL+EKA+ L +G + + K+W Y ++
Sbjct: 324 EWQANCSTYDIRIVNVLIGAYAKEGLIEKAKELKEKAPRRGGKANAKTWEIFMDYYVKSG 383
Query: 239 QIHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL-NDKGFI 296
+ A+E M K ++ + KW PS E++ + YF+ + D+ GAEN +E+L N I
Sbjct: 384 DMAHALECMSKAVSIGKGDGGKWIPSQETVRTLMSYFEQKKDVNGAENLLEILKNGTDNI 443
Query: 297 PTDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
++ + L+ GKS+ R L ++ NE T
Sbjct: 444 GAEIFESLIRTYAAAGKSHPAMRRRLKMENVEVNEVT 480
>gi|255573975|ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532680|gb|EEF34462.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 490
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 164/292 (56%), Gaps = 3/292 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++L L +++ YNS++ LY K G E++ ++ EM+ + I D YTY + A A
Sbjct: 146 MEKMKELNLGLSSMSYNSLMTLYTKIGQPERIPGIIQEMKSDSIMPDSYTYNVWMRALAA 205
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G ++++ M+ D VA DW Y+ + + Y L +KA LK+ E++ + +
Sbjct: 206 VNDISGAERVIEEMKRDGRVAADWTTYSNLASIYVDAQLFEKAEKTLKELEKR-NVHRDH 264
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SA+ ++TLYG+ G ++ RIW + A K N Y N+I L+ L DL AEK F E
Sbjct: 265 SAFQFLITLYGRIGNLHELYRIWRSLRLAFPKTSNISYLNMIQVLVNLKDLPGAEKCFRE 324
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N LI Y + GLLEKAE L +G + + K+W + Y +N
Sbjct: 325 WESNCSGYDIRVANVLIKAYAKKGLLEKAEELKERAIGRGAKPNAKTWEIFSDYYFENGD 384
Query: 240 IHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
I +VE + ++ + KW PS E +A+ + +F+ + D+ GAE FIE+L
Sbjct: 385 IKLSVECLANAISKGRGDGQKWIPSPEVVASFMAHFEQQKDVDGAEGFIEIL 436
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137
P + + + Y + N Y + ++A A+++K +E G S YN ++TLY K G+ +
Sbjct: 117 PETSKNHLTYGALLNCYCNQLMTEEAEALMEKMKELNLGLSSMS-YNSLMTLYTKIGQPE 175
Query: 138 DVLRIWELYKKAVKVLNNGYRNV-ISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFL 195
+ I + K + ++ NV + +L ++D+ AE++ EE + + D + L
Sbjct: 176 RIPGIIQEMKSDSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTYSNL 235
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHV--KSWYYLATGYRQNSQIHK 242
+Y L EKAE + ++L+ R +H ++ +L T Y + +H+
Sbjct: 236 ASIYVDAQLFEKAEKTL--KELEKRNVHRDHSAFQFLITLYGRIGNLHE 282
>gi|195613552|gb|ACG28606.1| tetratricopeptide-like helical [Zea mays]
gi|414870858|tpg|DAA49415.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 517
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 182/333 (54%), Gaps = 8/333 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+++G+ ++ Y M+KLY +TG E++ ++ +MEE G+ D ++ L+AY A
Sbjct: 166 KMQEMGMT-SSYAYTWMMKLYLQTGQLERVHAMFQDMEEKGVKPDTFSVEAMLAAYIAAE 224
Query: 63 DHEGIDKILTMMEADPNVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D +G+ K+L +A+P+ L W +A+ + + K G+ A+ L ++E +I
Sbjct: 225 DVQGVGKVLD--KANPHEKLVTWHGHASAASLFMKSGMQVGAVMALVEAERRISPKSSRI 282
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
AY +L Y + G + RIW +YK V N Y + +S+LL+ +D++ AE +EWE
Sbjct: 283 AYAFLLKTYTELGMHAEAGRIWSVYKSKVPPCNTMYMSRLSALLRTNDIDGAEATLKEWE 342
Query: 182 SQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L Y D R+ N ++D YCR GL+EKA LV+ KGR + +WY LA G+ + Q+
Sbjct: 343 TVPLRYHDFRLINVMVDAYCREGLVEKAVALVDGAIKKGRTPYANTWYKLAGGFFKTGQV 402
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+AV+ +K L + W+P + ++ L++F D+ D+G AE + L + D+
Sbjct: 403 PEAVDMTRKALDSATP--PWRPDLANVLMSLNHFVDQKDVGAAEEMVSTLQKLVPLTRDV 460
Query: 301 QDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
LL V+ GK + L + + L +EET
Sbjct: 461 YHCLLKTYVRAGKPPSDLLERMKEDGLEADEET 493
>gi|226533322|ref|NP_001142217.1| uncharacterized protein LOC100274385 [Zea mays]
gi|194707648|gb|ACF87908.1| unknown [Zea mays]
gi|414870857|tpg|DAA49414.1| TPA: hypothetical protein ZEAMMB73_857299 [Zea mays]
Length = 472
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 182/333 (54%), Gaps = 8/333 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+++G+ ++ Y M+KLY +TG E++ ++ +MEE G+ D ++ L+AY A
Sbjct: 121 KMQEMGMT-SSYAYTWMMKLYLQTGQLERVHAMFQDMEEKGVKPDTFSVEAMLAAYIAAE 179
Query: 63 DHEGIDKILTMMEADPNVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D +G+ K+L +A+P+ L W +A+ + + K G+ A+ L ++E +I
Sbjct: 180 DVQGVGKVLD--KANPHEKLVTWHGHASAASLFMKSGMQVGAVMALVEAERRISPKSSRI 237
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
AY +L Y + G + RIW +YK V N Y + +S+LL+ +D++ AE +EWE
Sbjct: 238 AYAFLLKTYTELGMHAEAGRIWSVYKSKVPPCNTMYMSRLSALLRTNDIDGAEATLKEWE 297
Query: 182 SQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L Y D R+ N ++D YCR GL+EKA LV+ KGR + +WY LA G+ + Q+
Sbjct: 298 TVPLRYHDFRLINVMVDAYCREGLVEKAVALVDGAIKKGRTPYANTWYKLAGGFFKTGQV 357
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+AV+ +K L + W+P + ++ L++F D+ D+G AE + L + D+
Sbjct: 358 PEAVDMTRKALDS--ATPPWRPDLANVLMSLNHFVDQKDVGAAEEMVSTLQKLVPLTRDV 415
Query: 301 QDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
LL V+ GK + L + + L +EET
Sbjct: 416 YHCLLKTYVRAGKPPSDLLERMKEDGLEADEET 448
>gi|242034057|ref|XP_002464423.1| hypothetical protein SORBIDRAFT_01g017970 [Sorghum bicolor]
gi|241918277|gb|EER91421.1| hypothetical protein SORBIDRAFT_01g017970 [Sorghum bicolor]
Length = 496
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 168/305 (55%), Gaps = 2/305 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q M++LG + + YN+++ LY G E++ +M EM+ +GI D ++Y +++Y
Sbjct: 169 FQNMKELGFVFSALSYNNLMGLYTNIGQHERVPMVMAEMKRDGIVPDNFSYRICINSYGI 228
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME +P + +DW YA V + Y K L +KA + L+K+E ++ K
Sbjct: 229 RADFFGLENTLEEMECEPQIVVDWNTYAVVASNYIKGYLREKAYSALRKAEAKMD-KKDG 287
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY +++LYG G K +V R+W L+ K +N Y N+++ L+KLD++ AE + +E
Sbjct: 288 DAYGHLISLYGHLGDKLEVKRLWALHMLNCKRYINKDYTNMLAVLVKLDEITEAEDLLKE 347
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES +D ++PN L+ Y + GLL+KAE L++ KG+ SW+ +A GY +
Sbjct: 348 WESSKNAFDFQVPNVLLTGYRQKGLLDKAETLLDGFLKKGKTPTSTSWWIVAIGYAEKGD 407
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA E K L+ + W P + L Y +EG++ E F+ LL + +D
Sbjct: 408 VAKAYELTKNALSVFAPNSGWIPRPSIIEMILKYLGNEGEVKDVEAFVNLLKVAVPMNSD 467
Query: 300 LQDKL 304
+ + L
Sbjct: 468 MTEAL 472
>gi|242096944|ref|XP_002438962.1| hypothetical protein SORBIDRAFT_10g029030 [Sorghum bicolor]
gi|241917185|gb|EER90329.1| hypothetical protein SORBIDRAFT_10g029030 [Sorghum bicolor]
Length = 503
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 183/342 (53%), Gaps = 15/342 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM++LG T + Y++++ LY E++ S+M EM+ NGI + ++Y ++AY
Sbjct: 175 FQKMKELGFVFTPLPYSNLMILYANVEQHERVPSVMAEMKSNGIVPNNFSYNICINAYGT 234
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++ L ME V +DW YA V + Y K L +KA + L+K+E ++ K +
Sbjct: 235 RADFSGLENTLEEMEFASQVVVDWRTYADVASHYIKGDLREKAYSALQKAEAKMD-EKDS 293
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY+ +++LYG G K ++ R+W L K +N GY+ +++ L+KLD++ AE + ++
Sbjct: 294 FAYSHLISLYGHLGDKSEIKRLWVLQMLKCKGCINKGYKYMLTVLVKLDEIAEAEDLLKK 353
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES +D ++PN L+ YC+ GLL+KAE L++ KG++ SW +A+ Y +
Sbjct: 354 WESSKNEFDFKVPNILLKGYCQWGLLDKAEALLDGFLRKGKKPSATSWAIVASAYAEKGD 413
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A E K+ L+ W P + L Y DEG++ E FI+LL K +P
Sbjct: 414 VPRAYELTKRALSMCVPDSGWIPEPSMIEVILKYLGDEGEVKDVEAFIDLL--KVVVP-- 469
Query: 300 LQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTS 341
+ + + + +S E + EET P D++
Sbjct: 470 MNSDMTEALSRARSREEKKKA---------EETTEAPREDST 502
>gi|297848282|ref|XP_002892022.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337864|gb|EFH68281.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 523
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 169/315 (53%), Gaps = 3/315 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MRD G A + +N M+ LY ++K+D+++ EM++ I D Y+Y LS+
Sbjct: 191 LHTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGS 250
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++ + M++D ++ +W ++T+ Y K+G +KA L+K E +I G +
Sbjct: 251 LGSVEKMELVYQQMKSDVSINPNWTTFSTMATMYIKMGETEKAEDALRKVEARITG-RNR 309
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G K ++ R+W +YK V + N GY ++SSL ++ D+E AEK++EE
Sbjct: 310 IPYHYLLSLYGSVGNKKELYRVWNVYKSVVPSIPNLGYHALVSSLARMGDIEGAEKVYEE 369
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W YD RIPN L++VY +N LEKAE L +H G + +W LA G+ +
Sbjct: 370 WLPVKSSYDPRIPNLLMNVYVKNDQLEKAEGLFDHMVEMGGKPSSSTWEILADGHTRKRC 429
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I +A+ ++K +A + W+P V L+ ++E D+ E +ELL G +
Sbjct: 430 IPEALTCLRKAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGHLEDK 488
Query: 300 LQDKLLDNVQNGKSN 314
L+D +N N
Sbjct: 489 AYQALIDVDENRTEN 503
>gi|449431834|ref|XP_004133705.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Cucumis sativus]
gi|449478158|ref|XP_004155237.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Cucumis sativus]
Length = 492
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 162/276 (58%), Gaps = 2/276 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKM+++GLA + + YN ++ LY TG +K+ +++ EM+ENG+ D ++Y +S+Y
Sbjct: 170 MQKMKEMGLASSPLCYNDIMCLYLNTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGA 229
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD ++ +L ME ++++DW Y+ V + K G+ DKA+ L+K E+++ +
Sbjct: 230 RSDVISMENVLKEMEGQTHISMDWTTYSMVAGFFIKAGMHDKAMNYLRKCEDKVDEDAL- 288
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+N +++ Y G K++V+R+W L KK K LN Y ++ SL+KL+ LE AE + EW
Sbjct: 289 -GFNHLISHYTNLGHKNEVMRLWALLKKGKKQLNRDYITMLGSLVKLELLEEAENLVMEW 347
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES CYD R+PN ++ Y + GL+EKAE ++ + + G SW +A+GY + +
Sbjct: 348 ESSCQCYDFRVPNVVLIGYSQKGLIEKAEKMLRNIIVNGMIPSPNSWGIIASGYLEKQNL 407
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
KA E MK+ LA W+P L++ L + +
Sbjct: 408 EKAFECMKEALAVKGQNKVWRPKPNVLSSILRWLSE 443
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-E 144
+Y + N Y + GL+DK+LA ++K +E + A YN I+ LY G+ D V + E
Sbjct: 149 LYGALLNCYVREGLIDKSLAHMQKMKE-MGLASSPLCYNDIMCLYLNTGQADKVPNVLSE 207
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNG 203
+ + V N YR ISS D+ S E + +E E Q + D + + + + G
Sbjct: 208 MKENGVLPDNFSYRICISSYGARSDVISMENVLKEMEGQTHISMDWTTYSMVAGFFIKAG 267
Query: 204 LLEKAEN 210
+ +KA N
Sbjct: 268 MHDKAMN 274
>gi|22328859|ref|NP_680735.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146702|sp|Q84JR3.1|PP334_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g21705, mitochondrial; Flags: Precursor
gi|28393142|gb|AAO42004.1| unknown protein [Arabidopsis thaliana]
gi|28827500|gb|AAO50594.1| unknown protein [Arabidopsis thaliana]
gi|332659092|gb|AEE84492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 492
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 171/320 (53%), Gaps = 3/320 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM+++G +++ YN+++ LY G EK+ ++ EM+E + D Y+Y ++A+
Sbjct: 149 FEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGA 208
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E I L ME ++ +DW YA Y G D+A+ +LK SE +++ K
Sbjct: 209 MYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLE-KKDG 267
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++TLY + GKK +VLR+W+L K K +N Y V+ SL+K+D L AE++ E
Sbjct: 268 EGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTE 327
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W+S CYD R+PN +I Y + EKAE ++ +G+ +SW +AT Y +
Sbjct: 328 WKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGT 387
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ A + MK L KW+P + + + L + DEG + E+F+ L + +
Sbjct: 388 LENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQ 447
Query: 300 LQDKLLD-NVQNGKSNLETL 318
+ L+ +++ G N++TL
Sbjct: 448 MYHALVKADIREGGRNIDTL 467
>gi|357165075|ref|XP_003580262.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Brachypodium distachyon]
Length = 513
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 168/295 (56%), Gaps = 3/295 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ +N ++ Y +K+ ++ EM+E +++D TY + ++A
Sbjct: 202 FEQMRKKGYASDTLPFNVLMNFYVDVEEPQKVSAVTDEMKERNVSFDVCTYNIWIKSFAA 261
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +G+D++ M AD +V +W Y T+ + + K+G +KA LK++E++ G +
Sbjct: 262 MKDADGMDRVFNQMIADESVVANWTTYTTLASMHIKLGNFEKAEVCLKEAEKRTTG-RDK 320
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY KK++V RIW YK ++N GY+ V+S+L++L D+E AE ++EE
Sbjct: 321 KCFHFLITLYSYLQKKEEVYRIWNWYKATFSTIHNLGYQEVLSALVRLGDIEGAELLYEE 380
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y R G + KAE +N KG +W LA+ Y +++Q
Sbjct: 381 WASKSSSFDPKTMNILLAWYSREGFVVKAEQTLNRFVEKGGNPKPNTWEILASAYLKDNQ 440
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ +A+ M+K AA ++ +W+P ++ + L YFK+ D A+ + +L +G
Sbjct: 441 LSEALSCMEKA-AAVKSASRWRPRPSNVESLLAYFKENNDTDSADRLMGVLTSRG 494
>gi|293332912|ref|NP_001168310.1| hypothetical protein [Zea mays]
gi|223947377|gb|ACN27772.1| unknown [Zea mays]
gi|414586053|tpg|DAA36624.1| TPA: hypothetical protein ZEAMMB73_688721 [Zea mays]
Length = 513
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 172/308 (55%), Gaps = 3/308 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ N ++ Y +G +++ +++ EM+E +++D TY + + A
Sbjct: 202 FEQMRKKGFASDTLPCNVLMNFYVDSGEPDEVLAIIDEMKERNVSFDVCTYNIWIKSCAA 261
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E ++++ + M AD +V +W Y T+ + Y K+G +KA LK +E++ G +
Sbjct: 262 KQDAEEMEQVFSQMIADESVVANWTTYTTLASMYLKLGNSEKAEECLKDAEKRTTG-REK 320
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY GKK++V RIW YK +++N GY+ ++S+L+++ D+E AE ++EE
Sbjct: 321 KCFHYLMTLYSHLGKKEEVYRIWNWYKATFPMIHNLGYQELLSALIRIGDIEGAELLYEE 380
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y + GL+ KAE VN KG +W LAT Y + +
Sbjct: 381 WASKSYSFDPKTMNILLAWYAKEGLITKAEQTVNRFVEKGGNPKPNTWEILATAYMNDDK 440
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I +A+ M+K A ++ KWKP ++ L FK++ D GA+ + +L +G +
Sbjct: 441 ISEALSCMEKATAV-KSASKWKPRPTNVETLLASFKEKNDAEGADRLVSVLTSRGCAEDE 499
Query: 300 LQDKLLDN 307
L+D
Sbjct: 500 EYKSLIDT 507
>gi|224119780|ref|XP_002331159.1| predicted protein [Populus trichocarpa]
gi|118487894|gb|ABK95769.1| unknown [Populus trichocarpa]
gi|222873242|gb|EEF10373.1| predicted protein [Populus trichocarpa]
Length = 490
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 163/292 (55%), Gaps = 3/292 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++L L +++ YNS++ LY K G E++ +++ EM+ + + D YTY + A A
Sbjct: 146 IEKMKELNLGLSSMSYNSLMTLYTKVGQPERIPAIIQEMKADNVMPDSYTYNVWMRALAA 205
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G+++++ M+ D VA +W Y+ + + Y G DKA LK+ E+I K
Sbjct: 206 VNDISGVERVIEEMKRDGRVAANWTTYSNLASIYVDAGYFDKAEKALKEL-EKINANKDL 264
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
A+ ++TLYG+ GK +V RIW + A K N Y N+I L+ L D+ AEK F E
Sbjct: 265 FAFQFLITLYGRTGKLIEVYRIWRSLRLAFPKTANISYLNMIQVLVNLKDVPGAEKCFRE 324
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N +I Y + GL++KAE L + +G + + K+W Y +N
Sbjct: 325 WESGCSTYDIRVANVVISAYAKEGLVDKAEELKERARRRGAKPNSKTWEIFCDYYLKNGD 384
Query: 240 IHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ V+ + ++A + KW PS + + + +F+ + D+ GAE+ IE+L
Sbjct: 385 VKLGVDCIANAVSAGRGNGQKWVPSPVIVGSLMAHFEQQKDVDGAEDLIEIL 436
>gi|357446577|ref|XP_003593564.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482612|gb|AES63815.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 495
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 164/291 (56%), Gaps = 2/291 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++LG A +++ YN+++ LY G EK+ + +EM+EN + D ++Y + +Y
Sbjct: 152 LKKMKELGFALSSLTYNNIMCLYTNIGQHEKVSDVFNEMKENHVLPDNFSYRICIGSYGV 211
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD +G++ IL ME+ P++ +DW Y+ V N Y K L +A+ L+K E+++ K
Sbjct: 212 RSDIDGMNAILKEMESQPHIVMDWNTYSVVANFYIKAELSSEAIDALRKCEKRLDD-KDG 270
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++LY + GKK++VLR+W++ K A K LN + ++ SL+KL++ + A+KI +E
Sbjct: 271 EGYNHLISLYARLGKKNEVLRLWDMEKSACKRCLNRDFITMLESLVKLEEFDEADKILKE 330
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE CYD +PN ++ Y EKAE ++ K + SW +A Y +
Sbjct: 331 WEFSGNCYDYGVPNVVVVGYSEKDFPEKAEAILQDIWKKRKYTDTSSWILVADRYLLKGE 390
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ KA+E +K + Y K KP+ +++ + D + AE + LL
Sbjct: 391 MEKALECLKTAVCLYPENKKRKPNHRVISSIYSWIGDNASVEDAEALVRLL 441
>gi|20453085|gb|AAM19786.1| At1g02150/T7I23.8 [Arabidopsis thaliana]
gi|29028736|gb|AAO64747.1| At1g02150/T7I23.8 [Arabidopsis thaliana]
Length = 524
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 165/304 (54%), Gaps = 7/304 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MRD G A + +N M+ LY ++K+D+++ EM++ I D Y+Y LS+
Sbjct: 192 LNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGS 251
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++ + M++D ++ +W ++T+ Y K+G +KA L+K E +I G +
Sbjct: 252 LGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITG-RNR 310
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G K ++ R+W +YK V + N GY ++SSL+++ D+E AEK++EE
Sbjct: 311 IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEE 370
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W YD RIPN L++ Y +N LE AE L +H G + +W LA G+ +
Sbjct: 371 WLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRC 430
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I +A+ ++ +A + W+P V L+ ++E D+ E +ELL G D
Sbjct: 431 ISEALTCLRNAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSG----D 485
Query: 300 LQDK 303
L+DK
Sbjct: 486 LEDK 489
>gi|22329290|ref|NP_171717.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806400|sp|Q8LPS6.2|PPR3_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g02150
gi|2317908|gb|AAC24372.1| Unknown protein [Arabidopsis thaliana]
gi|332189272|gb|AEE27393.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 524
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 165/304 (54%), Gaps = 7/304 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MRD G A + +N M+ LY ++K+D+++ EM++ I D Y+Y LS+
Sbjct: 192 LNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGS 251
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++ + M++D ++ +W ++T+ Y K+G +KA L+K E +I G +
Sbjct: 252 LGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITG-RNR 310
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G K ++ R+W +YK V + N GY ++SSL+++ D+E AEK++EE
Sbjct: 311 IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEE 370
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W YD RIPN L++ Y +N LE AE L +H G + +W LA G+ +
Sbjct: 371 WLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRC 430
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I +A+ ++ +A + W+P V L+ ++E D+ E +ELL G D
Sbjct: 431 ISEALTCLRNAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSG----D 485
Query: 300 LQDK 303
L+DK
Sbjct: 486 LEDK 489
>gi|242076656|ref|XP_002448264.1| hypothetical protein SORBIDRAFT_06g024190 [Sorghum bicolor]
gi|241939447|gb|EES12592.1| hypothetical protein SORBIDRAFT_06g024190 [Sorghum bicolor]
Length = 515
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 169/295 (57%), Gaps = 3/295 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ N ++ Y +G ++ +++ EM+E +++D TY + + A
Sbjct: 204 FEQMRKKGFASDTLPCNVLMNFYVDSGEPNEVLAIIDEMKERNVSFDVCTYNIWIKSCAA 263
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E ++++ + M AD +V +W Y T+ + Y K+G +KA LK +E++ G +
Sbjct: 264 KQDAEEMERVFSQMIADESVVANWTTYTTLASMYIKLGNSEKAEECLKDAEKRTTG-REK 322
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY GKK++V RIW YK +++N GY+ ++S+L+++ D+E AE ++EE
Sbjct: 323 KCFHYLMTLYSHLGKKEEVYRIWNWYKATFPMIHNLGYQELLSALVRIGDIEGAELLYEE 382
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y + GL+ KAE +N KG +W LAT Y ++ +
Sbjct: 383 WASKSSSFDPKTMNILLAWYAKEGLITKAEQTLNRFVEKGGNPKPNTWEILATAYMKDDK 442
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
I +A+ M+K A ++ KWKP ++ + L FK++ D GA+ + +L +G
Sbjct: 443 ISEALSCMEKA-TAIKSANKWKPRPTNVESLLASFKEKNDAEGADRLVSVLTSRG 496
>gi|449434959|ref|XP_004135263.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g60770-like [Cucumis sativus]
gi|449478594|ref|XP_004155363.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g60770-like [Cucumis sativus]
Length = 489
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 159/291 (54%), Gaps = 4/291 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K+++L L T V YNS++ LY K G +K+ +++ EM+ +T+D YTY + A A
Sbjct: 148 FEKIKELNLPVTPVPYNSLMTLYSKIGRPDKVCTIIQEMKAANVTFDPYTYIVWMRALAA 207
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G+++++ M+ D V DW Y+ + + Y + +KA LK E+I +
Sbjct: 208 LNDISGVERVIDEMKRD-GVKGDWTTYSNLASIYVNANMFEKAAKALK-DLEKINTRRDL 265
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ ++TLYG+ G +V R+W + A + N Y N+I +L KL DL AEK F+E
Sbjct: 266 IGFQFLITLYGQIGDLTEVYRVWRSLRLAFPRTANISYLNMIQTLTKLKDLPGAEKCFKE 325
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES + YD RIPN LI Y + GLLEKA L +G + K+W + Y +N
Sbjct: 326 WESGSPTYDIRIPNALIGAYTKGGLLEKAMALKERALRRGARPNAKTWEFFLNYYLKNGD 385
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
A + + K + KW PS E + + + +F+ E D+ GAE+F+E++
Sbjct: 386 FKLAGDCVAKAIGKGDR-GKWIPSPEIIKSFMSHFEQEKDVDGAESFLEIV 435
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 15/219 (6%)
Query: 21 KLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV 80
KLYY KL +M + N D+ + L A A GID + P
Sbjct: 71 KLYYPA---LKLSEIMAKRGMNKTVSDQAIH---LDLVAKA---RGIDAAENYFVSLPES 121
Query: 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL 140
+ + + Y+++ N Y K L +KA A+ +K +E + YN ++TLY K G+ D V
Sbjct: 122 SKNHLSYSSLLNCYCKELLTEKAEALFEKIKE-LNLPVTPVPYNSLMTLYSKIGRPDKVC 180
Query: 141 RIWELYKKAVKVLNNGYRNVI--SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
I + KA V + Y ++ +L L+D+ E++ +E + + D + L +
Sbjct: 181 TIIQ-EMKAANVTFDPYTYIVWMRALAALNDISGVERVIDEMKRDGVKGDWTTYSNLASI 239
Query: 199 YCRNGLLEK-AENLVNHEKLKGREIHVKSWYYLATGYRQ 236
Y + EK A+ L + EK+ R + + +L T Y Q
Sbjct: 240 YVNANMFEKAAKALKDLEKINTRRDLI-GFQFLITLYGQ 277
>gi|356514762|ref|XP_003526072.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Glycine max]
Length = 492
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 166/289 (57%), Gaps = 5/289 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKM+D+G + + YN+++ LY +T +EK+ ++ +M+++G+ + ++Y +++Y
Sbjct: 155 MQKMKDMGFV-SFLNYNNIMSLYTQTQQYEKVPGVLEQMKKDGVPPNIFSYRICINSYCV 213
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KGAKV 119
D ++K+L ME +P++ +DW+ Y+ V N Y K + +KAL L K E++ +G V
Sbjct: 214 RGDLANVEKLLEEMEREPHIGIDWITYSMVTNFYIKADMREKALVCLMKCEKKTHRGNTV 273
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFE 178
AYN +++ K ++R W+L K K LN Y ++ L+KL +L+ AEK+
Sbjct: 274 --AYNHLISHNAALRSKGGMMRAWKLQKANCKKQLNREYITMLGCLVKLGELDKAEKVLG 331
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
EWE D R+PN L+ YC+ GL+EKAE L+ +G+ SW +A+GY
Sbjct: 332 EWELSGNTCDFRVPNILLIGYCQRGLVEKAEALLRKMVAEGKTPIPNSWSIVASGYVAKE 391
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ KA + MK+ +A + +W+P V+ +++ + + DI AE+F+
Sbjct: 392 NMEKAFQCMKEAVAVHAQNKRWRPKVDVISSIFSWVTNNRDIEEAEDFV 440
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW 143
W ++ + N Y + GL+DK+L++++K ++ + +N YN I++LY + + + V +
Sbjct: 132 WKVHGALLNCYVREGLVDKSLSLMQKMKDMGFVSFLN--YNNIMSLYTQTQQYEKVPGVL 189
Query: 144 ELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCR 201
E KK V YR I+S DL + EK+ EE E + + D + + + Y +
Sbjct: 190 EQMKKDGVPPNIFSYRICINSYCVRGDLANVEKLLEEMEREPHIGIDWITYSMVTNFYIK 249
Query: 202 NGLLEKA 208
+ EKA
Sbjct: 250 ADMREKA 256
>gi|326498623|dbj|BAK02297.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 168/308 (54%), Gaps = 3/308 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ +N ++ Y EK+ ++ EM++ I++D TY + A
Sbjct: 192 FEQMRKKGFATDTLPFNVLMNFYVDVAEPEKVSTVTDEMKQRNISFDVCTYNIWIKCCAA 251
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++++L M AD +V +W Y T+ + + K+ +KA LK++E++ G +
Sbjct: 252 MKDADAMERVLNQMTADESVVANWTTYTTLASMHIKLENFEKAEECLKEAEKRATG-RDK 310
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY KK++V RIW YK K ++N GY+ V+S+L++L D+E AE ++EE
Sbjct: 311 KCFHFLITLYSHLQKKEEVYRIWNWYKATFKTIHNLGYQEVLSALVRLGDIEGAELLYEE 370
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y R G + KA+ +N KG +W LAT Y +++Q
Sbjct: 371 WASKSSSFDPKTMNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTWEILATAYLKDNQ 430
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A+ ++K A ++ KW+P ++ L YFK++ D + + +L +G +
Sbjct: 431 LSEALSCLEKATAV-KSASKWRPRPTNVETLLAYFKEKNDTESVDRLMSVLRSRGCAENE 489
Query: 300 LQDKLLDN 307
L+D
Sbjct: 490 EYKSLIDT 497
>gi|326493098|dbj|BAJ85010.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510377|dbj|BAJ87405.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 168/308 (54%), Gaps = 3/308 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ +N ++ Y EK+ ++ EM++ I++D TY + A
Sbjct: 192 FEQMRKKGFATDTLPFNVLMNFYVDVAEPEKVSTVTDEMKQRNISFDVCTYNIWIKCCAA 251
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++++L M AD +V +W Y T+ + + K+ +KA LK++E++ G +
Sbjct: 252 MKDADAMERVLNQMTADESVVANWTTYTTLASMHIKLENFEKAEECLKEAEKRATG-RDK 310
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY KK++V RIW YK K ++N GY+ V+S+L++L D+E AE ++EE
Sbjct: 311 KCFHFLITLYSHLQKKEEVYRIWNWYKATFKTIHNLGYQEVLSALVRLGDIEGAELLYEE 370
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y R G + KA+ +N KG +W LAT Y +++Q
Sbjct: 371 WASKSSSFDPKTMNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTWEILATAYLKDNQ 430
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A+ ++K A ++ KW+P ++ L YFK++ D + + +L +G +
Sbjct: 431 LSEALSCLEKATAV-KSASKWRPRPTNVETLLAYFKEKNDTESVDRLMSVLRSRGCAENE 489
Query: 300 LQDKLLDN 307
L+D
Sbjct: 490 EYKSLIDT 497
>gi|449432307|ref|XP_004133941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Cucumis sativus]
gi|449525818|ref|XP_004169913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Cucumis sativus]
Length = 537
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 162/304 (53%), Gaps = 7/304 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G + +N M+ LY +EK++SL+ EM EN I D Y+Y LS+
Sbjct: 195 LEKMRTKGFTTHPLPFNVMMTLYMNVKEYEKVESLVSEMTENSIQLDIYSYNIWLSSCGL 254
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ D + +W ++T+ Y K+GL++KA L++ E +I G +
Sbjct: 255 QGSTEKMEEVYEQMKQDRTINANWTTFSTMATMYIKMGLMEKAEECLRRVESRIVG-RDR 313
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ +++LYG G K+++ R+W +YK + N GY +IS+L+++ D+E AEKI+EE
Sbjct: 314 IPYHYLISLYGSVGNKEEMYRVWNIYKNVFPTIPNLGYHAIISALIRVGDVEGAEKIYEE 373
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W + YD RI N I Y + G KAE+ +H G + + +W L + + +
Sbjct: 374 WLTVKSTYDPRIANLFIGWYVKEGNTSKAESFFDHMVEVGGKPNSSTWEILVDRHTKEGR 433
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ A+ + K+ +A + W+P ++ A D + EGDI E + LL P
Sbjct: 434 VSDALASWKEAFSA-EGSKSWRPKPYNVLAYFDLCEKEGDIASKEVLVGLLRQ----PKY 488
Query: 300 LQDK 303
LQDK
Sbjct: 489 LQDK 492
>gi|356522970|ref|XP_003530115.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Glycine max]
Length = 546
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 154/293 (52%), Gaps = 2/293 (0%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G + +N M+ LY + K+D L EM E I D YTY LS+
Sbjct: 209 MRSKGYVIHALPFNVMMTLYMNLNEYAKVDILASEMMEKNIQLDIYTYNIWLSSCGSQGS 268
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
E ++++ ME DP++ +W ++T+ + Y ++ +KA L+K E +IKG + +
Sbjct: 269 VEKMEQVFEQMEKDPSIIPNWSTFSTMASMYIRMDQNEKAEECLRKVEGRIKG-RDRIPF 327
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWES 182
+ +L+LYG GKKD+V R+W YK + N GY +ISSL+KLDD+E AEK++EEW S
Sbjct: 328 HYLLSLYGSVGKKDEVCRVWNTYKSIFPSIPNLGYHAIISSLVKLDDIEVAEKLYEEWIS 387
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
YD RI N LI Y + G +KA + G + +W L+ G+ + +I +
Sbjct: 388 VKSSYDPRIGNLLIGWYVKKGDTDKALSFFEQMLNDGCIPNSNTWEILSEGHIADKRISE 447
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
A+ +K+ A W+P L+A L+ +++ D+ AE I LL F
Sbjct: 448 AMSCLKEAFMAAGGSKSWRPKPSYLSAFLELCQEQDDMESAEVLIGLLRQSKF 500
>gi|356526773|ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g60770-like [Glycine max]
Length = 490
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 156/292 (53%), Gaps = 3/292 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++L L +++ YNS++ LY K G EK+ SL+ EM+ + + D YTY + A A
Sbjct: 146 MEKMKELSLPLSSMPYNSLMTLYTKVGQPEKIPSLIQEMKASNVMLDSYTYNVWMRALAA 205
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++++ M+ V DW Y+ + + + GL DKA LK+ E++ K
Sbjct: 206 VNDISGVERVHDEMKRGGQVTGDWTTYSNLASIFVDAGLFDKAEVALKELEKR-NAFKDL 264
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+AY ++TLYG+ G +V R+W + A K N Y N+I L+ L DL AEK F E
Sbjct: 265 TAYQFLITLYGRTGNLYEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKDLPGAEKCFRE 324
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE YD R+ N LI Y + +LEKAE L + +G + + K+ Y
Sbjct: 325 WECGCPTYDIRVANVLIRAYVKLDMLEKAEELKERARRRGAKPNAKTLEIFMDYYLLKGD 384
Query: 240 IHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
AV+ + + ++ + KW PS ++ + +F+ E D+ GAE F+E+L
Sbjct: 385 FKLAVDYLNEAISMGRGNGEKWVPSSRIISIMMRHFEQEKDVDGAEEFLEIL 436
>gi|343172214|gb|AEL98811.1| pentatricopeptide repeat-containing protein, partial [Silene
latifolia]
Length = 359
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 159/285 (55%), Gaps = 3/285 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++LGL T + YNS++ LY KTG EK+ +L+ EM+ + I YTY + A A
Sbjct: 76 MEKMKELGLPITAMSYNSLMTLYSKTGLPEKVPALVQEMKASDIMLQTYTYNVWMRALAA 135
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G++++L M+ D VA DW Y+ + + Y + + +KA LK+ E++ +
Sbjct: 136 VKDIYGVERVLDEMKRDGRVAEDWTTYSNLASIYVESKMFEKAENALKELEKRNTSQDL- 194
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S Y +LTLYGK G +V R+W + A K N Y N+I L+ L DL+ AEK F +
Sbjct: 195 SPYQFLLTLYGKTGNLIEVYRVWRSLRLAFPKTPNVAYLNMIQRLVTLKDLKGAEKCFAD 254
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD RI N L+ Y ++GLL++A+ L +G + + K+W Y + +
Sbjct: 255 WESSCTNYDIRIANVLMGAYIKDGLLQQAKELKKRACKRGAKPNAKTWEIFLEHYLKAGE 314
Query: 240 IHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGA 283
+ AV+ +++ +A + KW PS + + + + +F+ D+ GA
Sbjct: 315 VKLAVDCVERAVAIGRGDGSKWVPSSKVVNSIMGHFEQSKDVDGA 359
>gi|297734632|emb|CBI16683.3| unnamed protein product [Vitis vinifera]
Length = 423
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 165/312 (52%), Gaps = 7/312 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K+R+ G A T + +N M+ LY +K+ S++ EM I D Y+Y LS+
Sbjct: 117 IEKLRNKGYATTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWLSS--- 173
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ + + +W ++T+ Y K+G +KA LKK E +I +
Sbjct: 174 CESTERMEQVFEQMKLERTINPNWTTFSTMATMYIKLGQFEKAEECLKKVESRITN-RDR 232
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +++LYG G K +V R W +YK K + N GY +ISSL+++ DLE AEKI+EE
Sbjct: 233 MPYHYLISLYGSTGNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEE 292
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S YD RI N L+ Y + G LEKAE ++H G + + +W LA G +
Sbjct: 293 WLSVKSSYDPRIGNLLLGCYVKEGFLEKAEGFLDHMIEAGGKPNSTTWEILAEGNTGVKK 352
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I A+ K+ + A + WKP +++A LD ++E D E + LL G+ D
Sbjct: 353 ISDALSCFKRAVLA-EGSNGWKPKPVNVSAFLDLCEEEADTATKEALMGLLRQMGY-EDD 410
Query: 300 LQDKLLDNVQNG 311
+ LL+ Q+G
Sbjct: 411 GAEMLLNQFQSG 422
>gi|343172216|gb|AEL98812.1| pentatricopeptide repeat-containing protein, partial [Silene
latifolia]
Length = 359
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 158/285 (55%), Gaps = 3/285 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++LGL T + YNS++ LY KTG EK+ +L+ EM+ + I YTY + A A
Sbjct: 76 MEKMKELGLPITAMSYNSLMTLYSKTGLPEKVPALVQEMKASDIMLQTYTYNVWMRALAA 135
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G++++L M+ D VA DW Y+ + + Y + + DKA LK+ E++ ++
Sbjct: 136 VKDIYGVERVLDEMKRDGRVAEDWTTYSNLASIYVESKMFDKAENALKELEKRNTSREL- 194
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S Y +LTLYGK G +V R+W + A K N Y N+I L+ L DL+ AEK F +
Sbjct: 195 SPYQFLLTLYGKTGNLIEVYRLWRSLRLAFPKTPNVAYLNMIQRLVTLKDLKGAEKCFAD 254
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD RI N L+ Y ++G L++A+ L +G + + K+W Y + +
Sbjct: 255 WESSCTNYDIRIANVLMGAYIKDGSLQQAKELKKRACKRGAKPNAKTWEIFLEHYLKAGE 314
Query: 240 IHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGA 283
+ AV+ +++ +A + KW PS + + + +F+ D+ GA
Sbjct: 315 VKLAVDCVERAVAIGRGDGSKWVPSTNVVNSIMGHFEQSKDVDGA 359
>gi|255571041|ref|XP_002526471.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534146|gb|EEF35862.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 173/343 (50%), Gaps = 22/343 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR + +N M+ LY ++K+D ++ EM I D Y+Y LS+
Sbjct: 194 IEKMRKKDYTTHALPFNVMMTLYMNLKEYDKVDMMISEMMAKNIRLDIYSYNIWLSSRGS 253
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ D + +W ++T+ Y K+G L+KA L++ E +I G +
Sbjct: 254 QGSIERMEEVYEQMKLDSTINPNWTTFSTMATMYIKMGQLEKAEDCLRRVESRITG-RDR 312
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G K+++ R+W +YK + N GY +ISSL+++DD+E AEKI+EE
Sbjct: 313 IPYHYLLSLYGNVGNKEEIYRVWNIYKSIFATIPNLGYHAIISSLVRMDDIEGAEKIYEE 372
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W YD RI N L+ Y R G L+KAE+ +H G + + +W LA G+ + +
Sbjct: 373 WLPVKSSYDPRIGNLLMGWYVRGGNLDKAESFFDHMMEVGGKPNSSTWEILADGHTREKR 432
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I +A+ K+ A Q WKP +++ ++E D+ +LL G+
Sbjct: 433 ISEALSCFKEAFLA-QGSKSWKPKPVIISSFFKLCEEEADMASTGVLEDLLAQSGY---- 487
Query: 300 LQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTSD 342
L+DK T L G+S+ NE LS + T D
Sbjct: 488 LEDK-------------TYASLIGSSVPSNE--LSTEKDRTGD 515
>gi|225459164|ref|XP_002283946.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Vitis vinifera]
Length = 475
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 165/306 (53%), Gaps = 3/306 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M K+ DLGL + +N M+KLY T FE++ +++ +M++N I + +Y +SA ++
Sbjct: 135 MLKLNDLGLTVSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLSYNLWMSACSE 194
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S + + M D NV + W +T+ N Y K GL+ KA LK +E+++ A
Sbjct: 195 VSGLASAEMVYKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNAEKKL-SAHNR 253
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++T+Y K++VLR+WE KK ++ + Y ++ L+KL D+ AE+IF E
Sbjct: 254 LGYFFLITMYASLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDIAEAERIFRE 313
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES+ YD R+ N L+ Y R G ++KAE+L H +G + K+W L G+ ++
Sbjct: 314 WESKCWKYDIRVSNVLLGAYMRTGSMDKAESLHLHTLERGGCPNYKTWEILMEGWMKSQN 373
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA+ AMKK + + W+P+ + A Y ++ G++ ++++++ G
Sbjct: 374 MDKAINAMKKGFSMLKH-CDWRPNHGLVTAIARYLEEHGNVNDLNQYVKVIHQLGVAKLP 432
Query: 300 LQDKLL 305
L LL
Sbjct: 433 LYKSLL 438
>gi|356503236|ref|XP_003520417.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Glycine max]
Length = 555
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 2/293 (0%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G + N M+ LY + K+D L EM E I D YTY LS+
Sbjct: 208 MRSKGYVIHALPINVMMTLYMNLNEYAKVDMLASEMMEKNIQLDIYTYNIWLSSCGSQGS 267
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
E ++++ ME DP + +W ++T+ + Y ++ +KA L+K E +IKG + +
Sbjct: 268 VEKMEQVFEQMERDPTIVPNWSTFSTLASMYIRMNQNEKAEKCLRKVEGRIKG-RDRIPF 326
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ +L+LYG GKKD+V R+W YK ++ N GY +ISSL+KLDD+E AEK++EEW S
Sbjct: 327 HYLLSLYGSVGKKDEVYRVWNTYKSIFPRIPNLGYHAIISSLVKLDDIEGAEKLYEEWIS 386
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
YD RI N L+ Y + +KA + G + +W L+ G+ + +I +
Sbjct: 387 VKSSYDPRIGNLLMGWYVKKDDTDKALSFFEQISNDGCIPNSNTWEILSEGHIADKRISE 446
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
A+ +K+ W+P L+A L+ +++ D+ AE I LL F
Sbjct: 447 ALSCLKEAFMVAGGSKSWRPKPSYLSAFLELCQEQNDMESAEVLIGLLRQSKF 499
>gi|125541465|gb|EAY87860.1| hypothetical protein OsI_09282 [Oryza sativa Indica Group]
Length = 517
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 3/306 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +++ GL +N ++KLY T +EK+ S+++ M+ N I + +Y ++A A+
Sbjct: 173 MAELQRYGLPVDPHSFNEIMKLYVATCQYEKVLSVIYLMKRNNIPRNVLSYNIWMNACAE 232
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S + M D V + W Y T+ N + K G KALA L+ +E ++
Sbjct: 233 VSGLASVQSAFKEMLNDDMVEVGWSTYCTLANIFKKYGQSSKALACLRTAETKLSSTG-R 291
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ I+T Y +D V+R+WE K ++ Y + + L+K+ D+ AE F
Sbjct: 292 LGYSFIMTCYAALNDRDGVIRLWEASKIVPGRIPAANYMSAMVCLIKVGDIGRAEWTFGS 351
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE+++ +D R+ N L+ Y RNG +EKAE L H KG + K+W L G+ Q+ Q
Sbjct: 352 WEAESKKHDVRVSNVLLGAYVRNGWIEKAERLHLHMLEKGAHPNYKTWEILMEGFVQSKQ 411
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KAV AMKK L+ +T W+P +E L A YF+++G + A+ FI++L
Sbjct: 412 MDKAVNAMKKGLSLLKT-CHWRPPLELLEAIAKYFEEQGSVEDADRFIKVLQKFNLTSLP 470
Query: 300 LQDKLL 305
L LL
Sbjct: 471 LYKSLL 476
>gi|296083491|emb|CBI23460.3| unnamed protein product [Vitis vinifera]
Length = 444
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 151/264 (57%), Gaps = 6/264 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++M++L L +++ YNS++ LY K G EK+ +++ E++ I D YTY + A A
Sbjct: 145 MERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAA 204
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G+++++ M+ D VA DW Y+ + + Y G+ +KA LK+ E++ +
Sbjct: 205 VNDISGVERVIEEMKRDGRVASDWTTYSNLASIYVDAGVFEKAEKALKELEKR-NACRDL 263
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+A+ ++TLYG+ G +V R+W + A K N Y N+I L+ L DL AEK F E
Sbjct: 264 TAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPGAEKCFRE 323
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N LI Y ++GLLEKAE L H + +G + + K+W + +N +
Sbjct: 324 WESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHARRRGAKPNAKTWEIFLAYHLKNRE 383
Query: 240 IHKAVEAMKKVLA----AYQTLVK 259
+ +AV+ + ++ +++L++
Sbjct: 384 MKQAVDCVANAISTGVEVFESLIR 407
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137
P + + + Y + N Y K L +KA A++++ +E +K + YN ++TLY K G+ +
Sbjct: 116 PETSKNHLTYGALLNCYCKELLTEKAEALMERMKE-LKLGLSSMPYNSLMTLYTKIGQPE 174
Query: 138 DVLRIWELYKKAVKVLNNGYR-NV-ISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNF 194
+ I + K++ ++ + Y N+ + +L ++D+ E++ EE + + D +
Sbjct: 175 KIPTIIQEL-KSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSN 233
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
L +Y G+ EKAE + + + + ++ +L T Y
Sbjct: 234 LASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLY 273
>gi|115449217|ref|NP_001048388.1| Os02g0796400 [Oryza sativa Japonica Group]
gi|47497029|dbj|BAD19082.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47497238|dbj|BAD19283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537919|dbj|BAF10302.1| Os02g0796400 [Oryza sativa Japonica Group]
gi|125584008|gb|EAZ24939.1| hypothetical protein OsJ_08720 [Oryza sativa Japonica Group]
Length = 517
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 3/306 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +++ GL +N ++KLY T +EK+ S+++ M+ N I + +Y ++A A+
Sbjct: 173 MAELQRYGLPVDPHSFNEIMKLYVATCQYEKVLSVIYLMKRNNIPRNVLSYNIWMNACAE 232
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S + M D V + W Y T+ N + K G KALA L+ +E ++
Sbjct: 233 VSGLASVQSAFKEMLNDDMVEVGWSTYCTLANIFKKYGQSSKALACLRTAETKLSSTG-R 291
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ I+T Y +D V+R+WE K ++ Y + + L+K+ D+ AE F
Sbjct: 292 LGYSFIMTCYAALNDRDGVIRLWEASKIVPGRIPAANYMSAMVCLIKVGDIGRAEWTFGS 351
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE+++ +D R+ N L+ Y RNG +EKAE L H KG + K+W L G+ Q+ Q
Sbjct: 352 WEAESKKHDVRVSNVLLGAYVRNGWIEKAERLHLHMLEKGAHPNYKTWEILMEGFVQSKQ 411
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KAV AMKK L+ +T W+P +E L A YF+++G + A+ FI++L
Sbjct: 412 MDKAVNAMKKGLSLLKT-CHWRPPLELLEAIAKYFEEQGSVEDADRFIKVLQKFNLTSLP 470
Query: 300 LQDKLL 305
L LL
Sbjct: 471 LYKSLL 476
>gi|225453344|ref|XP_002270492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02150
[Vitis vinifera]
Length = 527
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 157/297 (52%), Gaps = 6/297 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K+R+ G A T + +N M+ LY +K+ S++ EM I D Y+Y LS+
Sbjct: 183 IEKLRNKGYATTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWLSS--- 239
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ + + +W ++T+ Y K+G +KA LKK E +I +
Sbjct: 240 CESTERMEQVFEQMKLERTINPNWTTFSTMATMYIKLGQFEKAEECLKKVESRITN-RDR 298
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +++LYG G K +V R W +YK K + N GY +ISSL+++ DLE AEKI+EE
Sbjct: 299 MPYHYLISLYGSTGNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEE 358
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S YD RI N L+ Y + G LEKAE ++H G + + +W LA G +
Sbjct: 359 WLSVKSSYDPRIGNLLLGCYVKEGFLEKAEGFLDHMIEAGGKPNSTTWEILAEGNTGVKK 418
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
I A+ K+ + A + WKP +++A LD ++E D E + LL G +
Sbjct: 419 ISDALSCFKRAVLA-EGSNGWKPKPVNVSAFLDLCEEEADTATKEALMGLLRQMGCL 474
>gi|297603118|ref|NP_001053460.2| Os04g0544400 [Oryza sativa Japonica Group]
gi|255675659|dbj|BAF15374.2| Os04g0544400 [Oryza sativa Japonica Group]
Length = 571
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 157/294 (53%), Gaps = 3/294 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ +N ++ Y EK+ L+ EM E + +D TY + + A
Sbjct: 200 FEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAA 259
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++++ M D V +W Y T+ + + K+G +KA LK++E++ G +
Sbjct: 260 MQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTG-REK 318
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY GKK++V R+W YK ++N GY+ V+S+L++L D+E AE ++EE
Sbjct: 319 KCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEE 378
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y R G + KAE +N KG +W L T Y ++ Q
Sbjct: 379 WASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQ 438
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+A+ ++K A + KW+P ++ + L FK++ D A+ + +L +
Sbjct: 439 SSEALSCLEKA-TAVASPSKWRPRPTNVESLLANFKEKNDAESADRLMNVLRSR 491
>gi|125591164|gb|EAZ31514.1| hypothetical protein OsJ_15655 [Oryza sativa Japonica Group]
Length = 531
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 157/294 (53%), Gaps = 3/294 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ +N ++ Y EK+ L+ EM E + +D TY + + A
Sbjct: 220 FEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAA 279
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++++ M D V +W Y T+ + + K+G +KA LK++E++ G +
Sbjct: 280 MQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTG-REK 338
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY GKK++V R+W YK ++N GY+ V+S+L++L D+E AE ++EE
Sbjct: 339 KCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEE 398
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y R G + KAE +N KG +W L T Y ++ Q
Sbjct: 399 WASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQ 458
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+A+ ++K A + KW+P ++ + L FK++ D A+ + +L +
Sbjct: 459 SSEALSCLEKATAV-ASPSKWRPRPTNVESLLANFKEKNDAESADRLMNVLRSR 511
>gi|32488964|emb|CAE04345.1| OSJNBb0038F03.9 [Oryza sativa Japonica Group]
Length = 511
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 157/294 (53%), Gaps = 3/294 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ +N ++ Y EK+ L+ EM E + +D TY + + A
Sbjct: 200 FEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAA 259
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++++ M D V +W Y T+ + + K+G +KA LK++E++ G +
Sbjct: 260 MQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTG-REK 318
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY GKK++V R+W YK ++N GY+ V+S+L++L D+E AE ++EE
Sbjct: 319 KCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEE 378
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y R G + KAE +N KG +W L T Y ++ Q
Sbjct: 379 WASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQ 438
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+A+ ++K A + KW+P ++ + L FK++ D A+ + +L +
Sbjct: 439 SSEALSCLEKATAV-ASPSKWRPRPTNVESLLANFKEKNDAESADRLMNVLRSR 491
>gi|125549215|gb|EAY95037.1| hypothetical protein OsI_16851 [Oryza sativa Indica Group]
Length = 511
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 157/294 (53%), Gaps = 3/294 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ +N ++ Y EK+ L+ EM E + +D TY + + A
Sbjct: 200 FEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAA 259
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++++ M D V +W Y T+ + + K+G +KA LK++E++ G +
Sbjct: 260 MQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTG-REK 318
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY GKK++V R+W YK ++N GY+ V+S+L++L D+E AE ++EE
Sbjct: 319 KCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEE 378
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y R G + KAE +N KG +W L T Y ++ Q
Sbjct: 379 WASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQ 438
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+A+ ++K A + KW+P ++ + L FK++ D A+ + +L +
Sbjct: 439 SSEALSCLEKATAV-ASPSKWRPRPTNVESLLANFKEKNDAESADRLMNVLRSR 491
>gi|326531954|dbj|BAK01353.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 518
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 154/292 (52%), Gaps = 4/292 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M ++ +GL +N M+KLY T +EK+ S++ M+ N I + +Y ++A
Sbjct: 171 MASLQSIGLPVDPHSFNEMMKLYVATCEYEKVFSVIDLMKRNNIPRNALSYNLWMNA-CS 229
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD + + M D + + W Y T+ N + K GL KA A L+ +E ++ A+
Sbjct: 230 VSDVTSVQSVFKEMVNDGTIEVGWSTYCTLANIFMKHGLNSKAFACLRTAETKLSTAQ-R 288
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ ++T Y G D V+R+WE K ++ + Y + I L+K+ D++ AE IF
Sbjct: 289 LGYSFVMTCYAALGDSDGVMRLWEASKCVPGRIPSANYMSAILCLIKVGDIDRAEWIFGS 348
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE + +D R+ N L+ Y RNG +EKAE L H KG + K+W L G+ Q+ Q
Sbjct: 349 WEVECRKHDVRVSNVLLGAYVRNGWIEKAEKLHLHMLEKGGRPNYKTWEILMEGFVQSRQ 408
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ KAV AMKK L+ + W+P + + A +F+++G+ A +I++L
Sbjct: 409 MDKAVNAMKKALSLMKG-CHWRPPLRLVEAIATFFEEQGNTDDANRYIKVLQ 459
>gi|147803609|emb|CAN75355.1| hypothetical protein VITISV_002476 [Vitis vinifera]
Length = 736
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 156/295 (52%), Gaps = 6/295 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K+R+ G A T + +N M+ LY +K+ S++ EM I D Y+Y LS+
Sbjct: 392 IEKLRNKGYATTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWLSS--- 448
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ + + +W ++T+ Y K+G +KA LKK E +I +
Sbjct: 449 CESTERMEQVFEQMKLERTINPNWTTFSTMATMYIKLGQFEKAEECLKKVESRITN-RDR 507
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +++LYG G K +V R W +YK K + N GY +ISSL+++ DLE AEKI+EE
Sbjct: 508 MPYHYLISLYGSTGNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEE 567
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S YD RI N L+ Y + G LEKAE ++H G + + +W LA G +
Sbjct: 568 WLSVKSSYDPRIGNLLLGCYVKEGFLEKAEGFLDHMIEAGGKPNSTTWEILAEGNTGVKK 627
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
I A+ K+ + A + WKP +++A LD ++E D E + LL G
Sbjct: 628 ISDALSCFKRAVLA-EGSNGWKPKPVNVSAFLDLCEEEADTATKEALMGLLRQMG 681
>gi|224063635|ref|XP_002301239.1| predicted protein [Populus trichocarpa]
gi|222842965|gb|EEE80512.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 157/297 (52%), Gaps = 3/297 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR + YN M+ LY ++K+D ++ EM E I D Y+Y LS+
Sbjct: 194 IDEMRGKDYVTHALPYNVMMTLYMNINEYDKVDLIISEMNEKNIKLDIYSYNIWLSSCGL 253
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++++ M++D ++ +W ++T+ Y K+G +KA L++ E +I G +
Sbjct: 254 QGSADKMEQVFEQMKSDGSINPNWTTFSTMATMYIKMGKFEKAEDCLRRVESRITG-RDR 312
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G K++V R+W +YK + N GY +ISSL+++DD+E AEKI+EE
Sbjct: 313 IPYHYLLSLYGNVGNKEEVYRVWNIYKSIFPSIPNLGYHAMISSLVRMDDIEGAEKIYEE 372
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S YD RI N + + G L+KAE+ +H +G + + SW LA G+ +
Sbjct: 373 WLSIKTSYDPRIANLFMAAFVYQGNLDKAESFFDHMLEEGGKPNSHSWEILAQGHISERR 432
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+A+ +K+ A + WKP+ ++++ ++E D+ E L G +
Sbjct: 433 TSEALSCLKEAFATPGS-KSWKPNPANVSSFFKLCEEEVDMASKEALASFLRQSGHL 488
>gi|224084592|ref|XP_002307350.1| predicted protein [Populus trichocarpa]
gi|222856799|gb|EEE94346.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 5/297 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M K+ GL T YN M+KLY +EK+ ++ EM+ N + + +Y + A+ +
Sbjct: 170 MIKLSSSGLLVTPHPYNEMMKLYMALSQYEKVPLVIAEMKRNKLCRNVLSYNLWMGAFGE 229
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + + M +D NV + W A++ N Y K G +DKAL +LK +E ++
Sbjct: 230 VFEVAKAEMVYKEMVSDENVGVGWSTLASLANVYIKAGFVDKALLVLKDAEMKL-STNGR 288
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV--KVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y ++TLY K+ VLR+WE KAV ++ Y VIS L+K+ DL +AE++F
Sbjct: 289 LGYFFLITLYSSLKNKEGVLRLWEA-SKAVGGRIPCADYMCVISCLVKVGDLVAAEQVFA 347
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
EWE+ YD R+ N L+ Y RNGL+ KAE+ H +G + K+W L G+ ++
Sbjct: 348 EWETNCFKYDIRVSNVLLGAYVRNGLMGKAESFHLHTVERGGCPNYKTWEILMEGWVKSQ 407
Query: 239 QIHKAVEAMKKVLAAYQT-LVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
++ KA++AMKK + + W+PS L A ++F+ G+ A ++I+ ++ G
Sbjct: 408 KMDKAIDAMKKGFSVLKVERCDWRPSHSILMAIAEHFEKHGNFEDANHYIKAVHGLG 464
>gi|224137116|ref|XP_002327026.1| predicted protein [Populus trichocarpa]
gi|222835341|gb|EEE73776.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 154/295 (52%), Gaps = 3/295 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MRD G + +N + LY ++K+D ++ EM E I D Y+Y LS+
Sbjct: 196 EMRDKGYVTHALPFNVTMTLYMNIKEYDKVDLMISEMNEKNIKLDIYSYNIWLSSCGSQG 255
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ ++++ M++D ++ +W ++T+ Y K+G +KA L++ E +I G +
Sbjct: 256 SADKMEQVYEQMKSDRSINPNWTTFSTMATMYIKMGQFEKAEDCLRRVESRITG-RDRIP 314
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWE 181
Y+ +L+LYG G K++V R+W +YK + N GY +ISSL++LDD+E AEKI+EEW
Sbjct: 315 YHYLLSLYGNVGNKEEVYRVWNIYKSIFPSIPNLGYHAIISSLVRLDDIEGAEKIYEEWL 374
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S YD RI N I Y G L++A++ +H G + + +W LA G+ +
Sbjct: 375 SIKTSYDPRIANLFIAAYVYQGNLDEAKSFFDHMLEDGGKPNSNTWEILAQGHISERRTS 434
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+A+ +K+ + WKP+ ++ + ++E D+ E L G +
Sbjct: 435 EALSCLKEAFVTPGS-KSWKPNPANVTSFFKLCEEEADMANKEALEGFLRQSGHL 488
>gi|218195308|gb|EEC77735.1| hypothetical protein OsI_16848 [Oryza sativa Indica Group]
Length = 1300
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 160/297 (53%), Gaps = 7/297 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G A T+ +N ++ Y EK+ L+ EM E + +D TY + + A
Sbjct: 200 FEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAA 259
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++++ M D V +W Y T+ + + K+G +KA LK++E++ G +
Sbjct: 260 MQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTG-REK 318
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ ++TLY GKK++V R+W YK ++N GY+ V+S+L++L D+E AE ++EE
Sbjct: 319 KCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEE 378
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S++ +D + N L+ Y R G + KAE +N KG +W L T Y ++ Q
Sbjct: 379 WASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQ 438
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+A+ ++K A + KW+P ++ + L FK++ D AE+ L+N GF+
Sbjct: 439 SSEALSCLEKATAV-ASPSKWRPRPTNVESLLANFKEKND---AESADRLMN-PGFV 490
>gi|357142115|ref|XP_003572464.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01990,
mitochondrial-like [Brachypodium distachyon]
Length = 546
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 176/344 (51%), Gaps = 10/344 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM+ + + +T+VYN+++ LY KT EK+ + +M EN + D +TY +Y
Sbjct: 208 FEKMKAMNITPSTLVYNNLMDLYLKTDQPEKIPTTFEQMRENHVRTDSFTYYMLTQSYIM 267
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D + +K + +E + + W +Y + N Y K+ DKA+ LKK+EE + +++
Sbjct: 268 VNDLKSAEKFVEELEK--STPVPWSLYTVLANNYNKLAQFDKAVLALKKAEEVMDRSEI- 324
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SA++ +L+LY G +V R+WE K A K +N Y ++S+L KLDD +S +++F+E
Sbjct: 325 SAWHNLLSLYASSGNSSEVKRVWESLKSAFTKCINRSYLVMLSALKKLDDFDSLQQLFQE 384
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD RI N +I+ Y + ++AE L KG +V ++Y Y + S+
Sbjct: 385 WESTHERYDMRITNVMIEAYLAKDMTDEAEALRQTAMAKGHS-NVTTFYIFVVSYLEKSR 443
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+A++ + +T W P E + L +F++ D+ G E F E L G + +
Sbjct: 444 TSEALDIWRDAEKMVKT-PNWVPPKELVTRFLKHFEEAKDVDGMEAFWEHLKKLGCLDAE 502
Query: 300 LQDKLLDN-VQNGKSNLETLRELYGNSL---AGNEETLSGPEGD 339
L+ G++N R + + + EE L G G+
Sbjct: 503 AYGALIRTYAAAGRTNTSISRRIEEDRVEIGPDMEELLRGVSGN 546
>gi|168006155|ref|XP_001755775.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693094|gb|EDQ79448.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 429
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 174/336 (51%), Gaps = 4/336 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K++ GL +N M+ LY + G KL ++ +M+ +G+ D YTY + +
Sbjct: 73 LEKLKSTGLLTLPFSFNQMMLLYKRKGMENKLPEILEDMKAHGVPKDVYTYNILMDVKSR 132
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D EG++KI ++AD NV D + T+ GLL+KA LK+ EE +
Sbjct: 133 SGDIEGMEKIFEELKADENVKADAATFGTLATACVHAGLLEKAKVYLKEMEEG-DIFRNR 191
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
SAY+++++ YG G D V R+WE K V N Y VI + KL +E AE+++E
Sbjct: 192 SAYDILISQYGAVGDVDGVERVWEKVKSGPIVSNRSYITVIEAFGKLGMVEKAEELYEVM 251
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+R N L+ Y R GL++KAE L++ + GR+ + ++++L TGY + Q+
Sbjct: 252 SQSKGLILSRQFNSLLSAYTRQGLMDKAEKLMDDMEKLGRKKNAITYHHLVTGYLKTDQL 311
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE-NFIELLNDKGFIPTD 299
KAV AMK+ L + + KP E+L A LD F + G++ AE F E+ +
Sbjct: 312 DKAVAAMKEALVDPKQ-GRSKPWFETLVAVLDAFAERGNVVNAEQQFQEIKKAYPRLNIQ 370
Query: 300 LQDKLLDNVQNGK-SNLETLRELYGNSLAGNEETLS 334
+ + LL N + L L + + L N+ETLS
Sbjct: 371 VYNILLKAYINSRVPALGFLHRMSTDKLVPNDETLS 406
>gi|255581582|ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528792|gb|EEF30799.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 300
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 94/128 (73%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ MRDLG A T+ YN ML L+Y+TGNF+KL++LM EMEENGI YDR+T +LSAYA
Sbjct: 173 MQNMRDLGFAGKTLTYNVMLNLHYQTGNFKKLEALMLEMEENGIAYDRFTLGIQLSAYAA 232
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++KI++ ME+D NV DW YA V NGY K GL+DKAL MLKKSE I G K +
Sbjct: 233 ICDIQRMEKIMSRMESDANVVTDWCNYAIVANGYRKAGLMDKALEMLKKSEGLITGKKRS 292
Query: 121 SAYNVILT 128
SAYN +LT
Sbjct: 293 SAYNFLLT 300
>gi|15240937|ref|NP_198098.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214236|sp|Q3E911.1|PP400_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27460
gi|332006308|gb|AED93691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 491
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 161/313 (51%), Gaps = 3/313 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+K+ LG T +N M+KLY +G +EK+ ++ M+ N I + +Y ++A +
Sbjct: 166 MEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCE 225
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S ++ + M D +V + W T+ N Y K G +KA +L+ +E+ + +
Sbjct: 226 VSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSN-R 284
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++TLY G K+ V+R+WE+ K ++ Y V+SSL+K DLE AE++F E
Sbjct: 285 LGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSE 344
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE+Q YD R+ N L+ Y RNG + KAE+L +G + K+W L G+ +
Sbjct: 345 WEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCEN 404
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA++AM +V + W+PS + A +YF+ E I A ++ L+ G
Sbjct: 405 MEKAIDAMHQVFVLMRR-CHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLP 463
Query: 300 LQDKLLDNVQNGK 312
L LL ++ K
Sbjct: 464 LYRLLLRMHEHAK 476
>gi|449457827|ref|XP_004146649.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 204
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/189 (47%), Positives = 120/189 (63%), Gaps = 7/189 (3%)
Query: 106 MLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164
MLKKSE + K A+NV L LY + GKKD++ RIW LYKK K+ N G+ ++I+SL
Sbjct: 1 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHRIWNLYKKE-KIFNKGFISMITSL 59
Query: 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV 224
LDD++ AE+I++EWE+Q L YD RIPN L+D YCR GL+EKAE L+N + R+ V
Sbjct: 60 FVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLMEKAEVLLNEMVIVRRKFSV 119
Query: 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284
+SW YLA+GY Q Q+ +AVE +K LAA + E LAA LD + D+ E
Sbjct: 120 ESWCYLASGYLQKDQLPQAVETLK--LAASVCPSRLNYVKEILAAFLD---GKQDVEETE 174
Query: 285 NFIELLNDK 293
+ LL +K
Sbjct: 175 KVVNLLREK 183
>gi|15217811|ref|NP_174123.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|12322989|gb|AAG51479.1|AC069471_10 hypothetical protein [Arabidopsis thaliana]
gi|332192782|gb|AEE30903.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 130/224 (58%), Gaps = 1/224 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKMRDLGL V YN+M+ LY N EK++ L+ EM++N + D T L Y+
Sbjct: 161 FQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSA 220
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D ++K L E + L+W + Y + KA+ ML+ +E+ + +
Sbjct: 221 VCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLK 280
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SAY+ ++ LYG+ G +++VLR+W+LYK + + NNGYR VI SLLK+DD+ AE+I++
Sbjct: 281 SAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKV 340
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
WES L +D RIP L Y G+ EKAE L+N + +K R ++
Sbjct: 341 WESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMN 384
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 48/181 (26%)
Query: 15 VYNSMLKLYYKT----GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
VY ++L Y K+ GN +D ++ EMEEN + D T L YA S + ++
Sbjct: 471 VYVALLSSYAKSDKNLGNM--VDEILREMEENNVDPDLITVNHVLKVYAAESKIQAMEMF 528
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAML-----KKSEEQIKGAKVNSAYNV 125
+ W + YG V + + L EE+++ K V
Sbjct: 529 MRR----------WAVEV-----YGDVARCKREVHNLWDECKNNKEEEVEDGK--KRLPV 571
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ TL +K+ ++GYR VISSLLKLDD++ EK++ EW+ +A
Sbjct: 572 VTTL--------------------LKMDDDGYRTVISSLLKLDDVQGVEKVYGEWKPKAG 611
Query: 186 C 186
C
Sbjct: 612 C 612
>gi|193806501|sp|Q9C7F1.2|PPR61_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g28020
Length = 566
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 130/224 (58%), Gaps = 1/224 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKMRDLGL V YN+M+ LY N EK++ L+ EM++N + D T L Y+
Sbjct: 161 FQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSA 220
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D ++K L E + L+W + Y + KA+ ML+ +E+ + +
Sbjct: 221 VCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLK 280
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SAY+ ++ LYG+ G +++VLR+W+LYK + + NNGYR VI SLLK+DD+ AE+I++
Sbjct: 281 SAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKV 340
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
WES L +D RIP L Y G+ EKAE L+N + +K R ++
Sbjct: 341 WESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMN 384
>gi|297851240|ref|XP_002893501.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297339343|gb|EFH69760.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 667
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 1/224 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKMR+LGL YN+M+ LY + EK++ L+ EM++N + D T L Y+
Sbjct: 153 FQKMRELGLLSRPSPYNAMMSLYIALNDREKVEELLREMKDNDVEADSITVNNVLKLYSA 212
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D ++K L E + L+W+ + Y + KA+ ML+ +EE +
Sbjct: 213 VCDVTAMEKFLNKWEGINGIKLEWLTTLDMAKAYLRARSNGKAIKMLRLTEELADRKSLK 272
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
SAY+ ++ LYG+ G +++VLRIW LYK + +N GYR VI SLLK+DD+ AE+I++
Sbjct: 273 SAYDHLMKLYGEAGNREEVLRIWNLYKMNIGQRDNKGYRTVIRSLLKVDDIFGAEEIYKV 332
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
WES +L +D RIP L Y G+ EKAE L+N + +K R+++
Sbjct: 333 WESLSLEFDIRIPTMLASGYRERGMTEKAEKLINSKTIKDRKMN 376
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 40/174 (22%)
Query: 15 VYNSMLKLYYKTG-NFEKL-DSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
VY ++L Y K+ N E + + ++ EMEEN + D T L YA AS E ++ +
Sbjct: 463 VYVALLSSYAKSDKNLENMVEEILREMEENNVDPDSITVNYVLKVYAAASKVEAMEMFMR 522
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILTL 129
W + YG V + + L + + K KV NV+ TL
Sbjct: 523 ----------HWAV-----EMYGNVAGCKREVHNLWEECKNKKEEKVGDGKECLNVVSTL 567
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+K+ ++GYR VISSLLKLDD++ AEK++ EW+ +
Sbjct: 568 --------------------LKMDDDGYRTVISSLLKLDDVQGAEKVYGEWKPK 601
>gi|326533934|dbj|BAJ93740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 162/319 (50%), Gaps = 7/319 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KMR + + T+VY +++ LY KTG EK+ EM NG+ D +TY ++
Sbjct: 161 EKMRTMNIVPNTLVYKNLMSLYLKTGQPEKILQTFEEMRANGVRTDNFTYYMLTESHIML 220
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E +K L +E ++ + W +Y + + Y KVG DKA LKK+EE + ++ +
Sbjct: 221 NGLESTEKFLEDLEK--SIPVHWSLYTRLADSYNKVGQFDKAGLTLKKAEEVMDRGEMFA 278
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEW 180
+N +L+LY G +V R+W + +K+ +N Y ++S+L KLDD + +++F+EW
Sbjct: 279 WHN-LLSLYASSGNLSEVKRVWSSLRSELKISSNRSYLVMLSALKKLDDFDCMQQVFQEW 337
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E YD RIPN +I Y + ++AE L +G + ++Y Y + S+
Sbjct: 338 ELTQESYDMRIPNVMIKAYLAKDMTDEAEALRQTAMAQGHSNPL-TFYIFTESYLEKSRT 396
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
A+E + +T W P E + L +F++ D+ G E+F L + TD
Sbjct: 397 EAALEVWRDAGKMVKT-PNWAPPPELVKRFLKHFEEAKDVDGMESFCACLEKLECLDTDA 455
Query: 301 QDKLLDN-VQNGKSNLETL 318
+D L V G+ NL ++
Sbjct: 456 RDALSRTYVAAGRKNLSSV 474
>gi|125532536|gb|EAY79101.1| hypothetical protein OsI_34208 [Oryza sativa Indica Group]
Length = 369
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 7/255 (2%)
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLR 141
+ W YAT+G + G+ ++AL ++SE++I AY +LT+Y G +V R
Sbjct: 109 MTWHSYATIGKVLMQSGMEERALQAFQESEKKIAKKSNRVAYGFLLTMYADLGMNSEVDR 168
Query: 142 IWELYKKAVKV--LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199
IW++YK V N+ Y IS LLK++D+ AEK +EEWES+ + +D+R+ N L+ Y
Sbjct: 169 IWDVYKSKVPASACNSMYMCRISVLLKMNDIVGAEKAYEEWESKHVYHDSRLINLLLTAY 228
Query: 200 CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK 259
C+ GL+EKAE LV+ KGR +WY LA GY + Q KA + KK LA+ +
Sbjct: 229 CKEGLMEKAEALVDQFVKKGRTPFGNTWYKLAGGYFKVGQASKAADLTKKALASASN--E 286
Query: 260 WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT-DLQDKLLDN-VQNGKSNLET 317
W P + ++ L+YF ++ ++ AE + LL + PT D+ LL V GK +
Sbjct: 287 WIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQ-RLVTPTRDIYHGLLKTYVNAGKPVSDL 345
Query: 318 LRELYGNSLAGNEET 332
LR + + + +EET
Sbjct: 346 LRRMKKDGMEADEET 360
>gi|302142021|emb|CBI19224.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 141/250 (56%), Gaps = 2/250 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M K+ DLGL + +N M+KLY T FE++ +++ +M++N I + +Y +SA ++
Sbjct: 162 MLKLNDLGLTVSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLSYNLWMSACSE 221
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S + + M D NV + W +T+ N Y K GL+ KA LK +E+++ A
Sbjct: 222 VSGLASAEMVYKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNAEKKL-SAHNR 280
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++T+Y K++VLR+WE KK ++ + Y ++ L+KL D+ AE+IF E
Sbjct: 281 LGYFFLITMYASLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDIAEAERIFRE 340
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES+ YD R+ N L+ Y R G ++KAE+L H +G + K+W L G+ ++
Sbjct: 341 WESKCWKYDIRVSNVLLGAYMRTGSMDKAESLHLHTLERGGCPNYKTWEILMEGWMKSQN 400
Query: 240 IHKAVEAMKK 249
+ KA+ AMKK
Sbjct: 401 MDKAINAMKK 410
>gi|357131918|ref|XP_003567580.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01990,
mitochondrial-like [Brachypodium distachyon]
Length = 545
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 167/327 (51%), Gaps = 16/327 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
KM DLG+A +T+ +N+++ LY K G +K+ L EM+ + D T C +++YA
Sbjct: 203 FHKMDDLGIASSTLPFNNLMSLYMKLGQHKKVAGLFEEMKAKNVKPDNLTCCVLMTSYAA 262
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ++++L ME + N AL W Y+T+ + Y GL++KA + LKK E ++
Sbjct: 263 LNKIDAVEEVLKEME-EKNAALGWSAYSTLASIYVSAGLVEKAESALKKLEGLVQPRDGR 321
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
++ +++LY G +V R+W++ K KV N Y +++ +L KL+D + ++IFEE
Sbjct: 322 QPFDFLMSLYASVGNLSEVNRVWDVVKATFPKVTNTSYFSMLQALYKLNDADRIKQIFEE 381
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES CYD ++ N + + +NGL ++AE L K KG + K+ Y
Sbjct: 382 WESNHECYDVKLTNIMTRAHLKNGLTKEAELLWEKAKAKGADFDSKTCELFLDHYM---- 437
Query: 240 IHKAVEAMKKVLAAYQTLVKW-----KPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
E MK L + + K K E + YF+++ D+ GAE L G
Sbjct: 438 ---GTEDMKSALHWVENVTKLPKKAGKLDQEKIQKFSKYFEEQKDVQGAEKLCSCLRTLG 494
Query: 295 FIPTDLQDKLLDN-VQNGKSNLETLRE 320
I + + LL + G++N +LR+
Sbjct: 495 CIDGKVYESLLRTYLAAGETN-HSLRQ 520
>gi|449479164|ref|XP_004155523.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 201
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 115/197 (58%), Gaps = 2/197 (1%)
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+TLY G KD+V R+W LY K N+GY +ISSL+KLDD++ AE+I +EWES
Sbjct: 1 MTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAERILKEWESGDTS 60
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
+D +IPN +I+ YC G ++KAE ++ G+E +W LA+GY N +KA E
Sbjct: 61 FDFKIPNMMINSYCTKGFVDKAEAYISRLIENGKEPRAYAWDRLASGYHSNGLTNKAAET 120
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLD 306
+KK ++ + +WKP+ + LAACL+Y K G++ AE I LL + P ++ +L D
Sbjct: 121 LKKAISV--SPPRWKPNYDILAACLEYLKTNGNVELAEEIIGLLCKRDIFPLNICKRLED 178
Query: 307 NVQNGKSNLETLRELYG 323
+ + N +L G
Sbjct: 179 YIHSENQNSIKCLDLLG 195
>gi|226502666|ref|NP_001140872.1| uncharacterized protein LOC100272948 [Zea mays]
gi|194701536|gb|ACF84852.1| unknown [Zea mays]
gi|413924212|gb|AFW64144.1| hypothetical protein ZEAMMB73_253479 [Zea mays]
Length = 525
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 3/292 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +++ GL +N ++KLY T +EK+ S++ M+ N I + +Y ++A A+
Sbjct: 178 MAQLQSHGLPVDPHSFNEIMKLYVATCQYEKVLSVIDLMKRNNIHRNVLSYNLWMNACAE 237
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S + + + +M D V + W Y T+ N + K GL ++A A L K+E ++ A
Sbjct: 238 VSGVDSVQSVFQVMLNDETVKVGWSTYCTLANIFRKNGLNNEAQACLVKAEAKLSPAG-R 296
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ ++T Y D V+R+WE K ++ Y +S +K+ D+ AE IF +
Sbjct: 297 LGYSFVMTCYAALNDSDGVMRMWEASKSVPGRIPTAYYMAAMSCSIKVGDISQAECIFGK 356
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE+ +D R+ N L+ Y RN +EKAE L H KG + K+W L GY Q+ Q
Sbjct: 357 WEAGCRKHDVRVSNVLLGAYVRNRWIEKAERLHLHMLEKGACPNYKTWEILMEGYVQSRQ 416
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ KAV MKK L+ ++ W+P VE + A +F+++G A +I++L
Sbjct: 417 MDKAVGCMKKGLSLLKS-CHWRPPVELMEAIGKHFEEQGSADDAYRYIKVLQ 467
>gi|297737393|emb|CBI26594.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 171/337 (50%), Gaps = 14/337 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM + G + + YN M+ LY G EK+ ++ E+++N + D TY L+ A
Sbjct: 180 MEKMSECGFLKCPLPYNHMISLYISDGQLEKVPGMIQELKKN-TSPDVVTYNLWLTVCAS 238
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+D E +K+L ++ DP DWV Y+++ N Y K GLLDKA L + E++
Sbjct: 239 QNDVETAEKVLLEIKKAKIDP----DWVTYSSLTNLYIKKGLLDKAATTLNEMEKRT-SR 293
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKI 176
K AY+ +++L+ KD V RIW+ K +N+ Y +ISSL+KL + E AE +
Sbjct: 294 KGRIAYSSLISLHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENL 353
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ EW S + D+R+PN L+ Y +E AE N +G +W L GY +
Sbjct: 354 YSEWTSVSPTGDSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLK 413
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
Q+ K ++ +K + + + KW P + + +++G+I GAE + +L G +
Sbjct: 414 KKQMEKVLDYFEKAVGSVK---KWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHV 470
Query: 297 PTDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
T++ + LL + GK L + + + +EET
Sbjct: 471 STEIYNWLLRAYAKAGKMPLIVAEWMKKDKVEMDEET 507
>gi|359490027|ref|XP_002279399.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 171/337 (50%), Gaps = 14/337 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM + G + + YN M+ LY G EK+ ++ E+++N + D TY L+ A
Sbjct: 293 MEKMSECGFLKCPLPYNHMISLYISDGQLEKVPGMIQELKKN-TSPDVVTYNLWLTVCAS 351
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+D E +K+L ++ DP DWV Y+++ N Y K GLLDKA L + E++
Sbjct: 352 QNDVETAEKVLLEIKKAKIDP----DWVTYSSLTNLYIKKGLLDKAATTLNEMEKRT-SR 406
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKI 176
K AY+ +++L+ KD V RIW+ K +N+ Y +ISSL+KL + E AE +
Sbjct: 407 KGRIAYSSLISLHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENL 466
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ EW S + D+R+PN L+ Y +E AE N +G +W L GY +
Sbjct: 467 YSEWTSVSPTGDSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLK 526
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
Q+ K ++ +K + + + KW P + + +++G+I GAE + +L G +
Sbjct: 527 KKQMEKVLDYFEKAVGSVK---KWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHV 583
Query: 297 PTDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
T++ + LL + GK L + + + +EET
Sbjct: 584 STEIYNWLLRAYAKAGKMPLIVAEWMKKDKVEMDEET 620
>gi|356510143|ref|XP_003523799.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Glycine max]
Length = 530
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 171/343 (49%), Gaps = 16/343 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY------CTR 54
M K+ +LGL + +N M+KLY T + K+ +M +M+ N + + +Y CT
Sbjct: 179 MVKLYELGLVLSPHPFNEMMKLYLATCEYRKVPLVMQQMKRNKVPCNVLSYNLWMNACTE 238
Query: 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
Y A+ ++ + M+ D NV + W AT+ N Y K G KA+ +LK +E ++
Sbjct: 239 EEGYGVAA----VETVFRQMQNDRNVEVGWSSLATLANAYKKAGQSKKAILVLKDAERKL 294
Query: 115 KGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV--KVLNNGYRNVISSLLKLDDLES 172
Y ++TLY +K+ VLR+WE KAV ++ Y ++ L+KL D+
Sbjct: 295 STCN-RLGYFFLITLYASLKEKEGVLRLWEA-SKAVGGRISCANYICILICLVKLGDIVQ 352
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A++IF EWES YD R+ N L+ Y RNG +E+AE+L H KG + K+ L
Sbjct: 353 AKRIFLEWESNCQKYDIRVSNVLLGAYARNGSMEEAESLHLHTLQKGGCPNYKTLEILME 412
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
GY ++ +A+ MK+ LA + W+P + A +Y + +G++ A +I L +
Sbjct: 413 GYVNWQKMDEAIITMKRALAMMKD-CHWRPPHGLVLAIAEYLEKDGNLKYANKYITDLRN 471
Query: 293 KGFIPTDLQDKLLD-NVQNGKSNLETLRELYGNSLAGNEETLS 334
G L LL ++ K L+ + + + + ETLS
Sbjct: 472 FGLFSLSLYKILLRMHLSANKPPFHILKMMDEDKIEMDNETLS 514
>gi|115436132|ref|NP_001042824.1| Os01g0301700 [Oryza sativa Japonica Group]
gi|14495231|dbj|BAB60950.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113532355|dbj|BAF04738.1| Os01g0301700 [Oryza sativa Japonica Group]
gi|125525550|gb|EAY73664.1| hypothetical protein OsI_01547 [Oryza sativa Indica Group]
gi|125570062|gb|EAZ11577.1| hypothetical protein OsJ_01442 [Oryza sativa Japonica Group]
gi|215713519|dbj|BAG94656.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 504
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 172/318 (54%), Gaps = 14/318 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ M+ + + +VYN+++ LY KT EK+ + + +M+E+GI ++++Y +Y
Sbjct: 164 ENMKAMNIVSDILVYNNLMCLYLKTDQPEKIPTTVVKMQESGIQPNKFSYFVLTESYIMM 223
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+D E +K+L ++ +V W +YAT+ NGY K+ DKA LKK+EE + V S
Sbjct: 224 NDIESAEKVLKELQEVNSVP--WSLYATLANGYNKLQQFDKAEFTLKKAEEVLDKHDVFS 281
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ +L+ Y G +V RIWE K A K N Y ++ +L KLDD ++ ++IF+EW
Sbjct: 282 -WHCLLSHYANSGNLSEVKRIWESLKSAFKKCTNRSYLVMLKALKKLDDFDTLQQIFQEW 340
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES YD +IPN +I Y G+++KAE + + + +++ A Y + S++
Sbjct: 341 ESSHEHYDMKIPNIIIQAYLDKGMVDKAEAM-RQTTMAQDHSNYRTFCIFAEFYLEKSKM 399
Query: 241 HKAVEAMKKVLAAYQTLVK---WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++A++ K + +VK W P + + L +F+D D+ G E F E L + G +
Sbjct: 400 NEALQVWKDA----KKMVKGQDWVPE-KLVNRYLKHFEDSKDVDGMETFCECLKNLGRLD 454
Query: 298 TDLQDKLLDN-VQNGKSN 314
+ + L+ + G++N
Sbjct: 455 AEAYEALIRTYISVGRTN 472
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 160/309 (51%), Gaps = 13/309 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM + G + + YN M+ LY G EK+ ++ E+++N + D TY L+ A
Sbjct: 180 MEKMSECGFLKCPLPYNHMISLYISDGQLEKVPGMIQELKKN-TSPDVVTYNLWLTVCAS 238
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+D E +K+L ++ DP DWV Y+++ N Y K GLLDKA L + E++
Sbjct: 239 QNDVETAEKVLLEIKKAKIDP----DWVTYSSLTNLYIKKGLLDKAATTLNEMEKRT-SR 293
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKI 176
K AY+ +++L+ KD V RIW+ K +N+ Y +ISSL+KL + E AE +
Sbjct: 294 KGRIAYSSLISLHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENL 353
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ EW S + D+R+PN L+ Y +E AE N +G +W L GY +
Sbjct: 354 YSEWTSVSPTGDSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLK 413
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
Q+ K ++ +K + + + KW P + + +++G+I GAE + +L G +
Sbjct: 414 KKQMEKVLDYFEKAVGSVK---KWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHV 470
Query: 297 PTDLQDKLL 305
T++ + LL
Sbjct: 471 STEIYNWLL 479
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 21/163 (12%)
Query: 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV--- 150
YGK G L A + + I +N +++ Y G + L LY K V
Sbjct: 814 YGKSGNLTIARRIFCRIPRDI------VTWNTLISSYAHCGHFAEAL---SLYDKMVLED 864
Query: 151 -KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
K + V+S+ L LE EK+ ++ I LID+Y + G LEK+
Sbjct: 865 LKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSR 924
Query: 210 NLVN--HEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ N HE+ V +W + +GY + A+E +++
Sbjct: 925 EIFNSMHER------DVITWNVMISGYGMHGDARSAIEXFQQM 961
>gi|255545872|ref|XP_002513996.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547082|gb|EEF48579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 496
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 160/306 (52%), Gaps = 3/306 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M K+ +LGL +N M+KLY T +EK+ ++ +M+ N I + +Y +S+Y +
Sbjct: 154 MMKLYNLGLIVNCYPFNEMMKLYMATSQYEKVALVIDQMKRNKIALNLLSYNLWMSSYGE 213
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S ++ + M D NV + W AT+ N Y K G++DKAL LK +E+ + + +
Sbjct: 214 VSKVVKVELVYKEMVNDDNVEVGWSTLATLANIYTKAGIVDKALLALKNAEKILSTSHL- 272
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++T Y K+ V R+WE K ++ Y V+S L+K+ DL AEK+F +
Sbjct: 273 LGYFFLMTQYSSLKNKEGVQRLWEACKGVNGRITCANYMCVLSCLVKVGDLLEAEKVFRD 332
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE YD R+ N L+ Y R GL+ KAE+L H +G + K+ L G+ ++ +
Sbjct: 333 WELNCRKYDIRVSNVLLGAYVRKGLMNKAESLHLHTLDRGGCPNYKTLEILMEGWVKSQK 392
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA++AM + ++ + W+PS + + ++ + + A +FI++++ G
Sbjct: 393 MDKAIDAMTQAISMLEH-CHWRPSHGIIMSIAEHLERNRNFEDANHFIQVIHHLGVASLP 451
Query: 300 LQDKLL 305
L LL
Sbjct: 452 LYKVLL 457
>gi|297835552|ref|XP_002885658.1| hypothetical protein ARALYDRAFT_899047 [Arabidopsis lyrata subsp.
lyrata]
gi|297331498|gb|EFH61917.1| hypothetical protein ARALYDRAFT_899047 [Arabidopsis lyrata subsp.
lyrata]
Length = 737
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 124/215 (57%), Gaps = 9/215 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKT--GNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
+KMR+LGL YNSM LY + GN K+D ++ EM+E+ I DR T L Y
Sbjct: 149 FKKMRELGLLLRASPYNSMTSLYRRIPHGNRCKVDEILREMKESNIKLDRDTVNNALRVY 208
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
AD + ++K L E + N LDW+ + Y + G KA ML+++EE ++ K
Sbjct: 209 ADVTHIATMEKFLA--EWEGNTPLDWLTRLDMAKAYLRSGFKGKAKEMLRRTEE-LRDPK 265
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI-F 177
+Y ++ LYG+ G + DV R+W+LYKK K N G+R +I SLLKLDD+ AE+ +
Sbjct: 266 ---SYEELMRLYGEAGGRKDVYRVWDLYKKLSKKDNEGFRALIGSLLKLDDINGAEEFYY 322
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
+EWE L +D RIP L+ Y G++EKA+ L+
Sbjct: 323 KEWECSGLPFDVRIPTMLVSSYREKGMVEKADKLI 357
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 105/204 (51%), Gaps = 11/204 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM DLG +NSM+ LY + G EK+++L+ +M+ I D T L YAD
Sbjct: 480 FEKMGDLGFLSKPSPFNSMISLYSQLGKREKVENLISKMKCMNIEPDSLTMNNVLRMYAD 539
Query: 61 ASDHEGIDKI-LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D + +DK + A+ N L+ + N Y + GLL KA+ + + E V
Sbjct: 540 ETDIKTMDKYKREWINAEKNTKLEMRTMVAMANAYERAGLLLKAIEITRSKNE------V 593
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ +N + K DD L K V + Y++VISSLLKLDDL+ AE+I+ E
Sbjct: 594 HRLWNEYKEKEKRNYKIDDA----NLCKCRSAVGDEEYQSVISSLLKLDDLKGAEEIYGE 649
Query: 180 WESQALCYDTRIPNFLIDVYCRNG 203
WE + ++TRIP +I YC+ G
Sbjct: 650 WEPEGPEFNTRIPCLIISRYCKEG 673
>gi|356518447|ref|XP_003527890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Glycine max]
Length = 496
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 103/342 (30%), Positives = 177/342 (51%), Gaps = 14/342 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M K+ +LGL + +N M+KLY T + K+ ++ +M+ N I + +Y ++A
Sbjct: 154 MLKLYELGLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNA--- 210
Query: 61 ASDHEG-----IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
S+ EG ++ + M D NV + W AT+ N Y K G KA+ +LK +E+++
Sbjct: 211 CSEEEGYVVAAVETVFRQMLNDRNVEVGWGSLATLANAYKKAGQSKKAILVLKDAEKKLS 270
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNNGYRNVISSLLKLDDLESA 173
+ ++TLY K+ VLR+WE KAV+ + Y +++ L+KL D+ A
Sbjct: 271 TCN-RLGHFFLITLYASLKDKEGVLRLWEA-SKAVRGRISCANYICILTCLVKLGDIVQA 328
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++IF EWES YD R+ N L+ Y RNGL+E+AE+L H KG + K+ L G
Sbjct: 329 KRIFLEWESNCQKYDIRVSNVLLGAYVRNGLMEEAESLHLHTLQKGGCPNYKTLEILMEG 388
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
Y ++ +A+ MK+ LA + W+P + A +Y + +G++ A+ +I +++
Sbjct: 389 YVNWQKMDEAIITMKRALAMMKD-CHWRPPHGIVLAIAEYLEKDGNLEYADKYITDIHNL 447
Query: 294 GFIPTDLQDKLLD-NVQNGKSNLETLRELYGNSLAGNEETLS 334
G + L LL ++ K L+ + + + + ETLS
Sbjct: 448 GLVSLSLYKVLLRMHLSANKPPFHILKMMDEDKVEIDNETLS 489
>gi|357137419|ref|XP_003570298.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Brachypodium distachyon]
Length = 513
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 152/295 (51%), Gaps = 9/295 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M ++ +GL +N MLKLY T FEK +++ M+ + I + +Y ++A
Sbjct: 166 MASLQSIGLPVDPHSFNEMLKLYVATCQFEKALAVIDLMKRSNIPRNVLSYNLWMNA-CS 224
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + M D V + W + T+ N + K GL KALA L+ +E ++ +
Sbjct: 225 VLGVASVQSVFKEMVNDGTVEVGWSTFCTLANIFIKHGLNSKALACLRTAETKL-SPRQR 283
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ ++T Y + D V+R+WE K ++ + Y + I +K+ D+ AE IF
Sbjct: 284 LGYSFVMTCYARLDDSDGVMRLWEASKSVPGRIPSANYMSTIICSIKVGDIAQAEWIFGS 343
Query: 180 WESQALC---YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
WE++ C D R+ N L+ Y RNG +EKAE L H KG + K+W L G+ Q
Sbjct: 344 WEAE--CGRKNDVRVSNVLLGAYVRNGWIEKAERLHLHMLEKGAHPNYKTWEILLEGFVQ 401
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ Q+ KAV A+KK L+ ++ W+P +E + A +F++ G++ A +I++L
Sbjct: 402 SRQMDKAVNAIKKALSLSKS-CHWRPPLELVEAIATFFEEHGNVDDANRYIKVLQ 455
>gi|168063926|ref|XP_001783918.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664548|gb|EDQ51263.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 448
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 174/337 (51%), Gaps = 6/337 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K++ G+ +N M+ LY + G K+ ++ +M+ +G+ D YTY + A
Sbjct: 113 LEKLKGTGILTLPFAFNQMMLLYKRKGMMNKVTEILADMKTHGVPKDVYTYNILMDVKAR 172
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D EG++KI + AD NV D + T+ GLLDKA + LK+ EE +
Sbjct: 173 SGDIEGMEKIFEELSADENVKADAATFGTLATFCVHAGLLDKARSYLKEMEEG-DVFRNR 231
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
SAY+++++ YG G ++ V R+WE K V N Y VI + KL +E AE+++
Sbjct: 232 SAYDILISQYGAVGDQEGVERVWEKVKSGPVVSNRSYITVIEAFGKLGMVEKAEELYGIM 291
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+R N L+ Y R GL+EKAE LV GR+ + ++++L TGY + Q+
Sbjct: 292 SKSKGLILSRQFNSLLSAYARQGLMEKAEKLVEDMVKLGRKKNAVTYHHLVTGYLKTDQL 351
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KA+ MK+ + + + VE+L + LD + + GD+ AE + + K + ++
Sbjct: 352 DKALAVMKEAQGDSKQ-GRSRLWVETLISVLDAYAERGDVISAEKQFQDIK-KAYPRPNI 409
Query: 301 Q--DKLLDN-VQNGKSNLETLRELYGNSLAGNEETLS 334
Q + LL +++ L L+ + + L NEETL+
Sbjct: 410 QVYNILLKAYIKSRVPALGFLQRMLADKLVPNEETLN 446
>gi|326507912|dbj|BAJ86699.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 493
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 12/293 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM+ + +VYN ++ LY K G EK+ S EM E+GI+ D++ Y T + +Y
Sbjct: 175 EKMKAKSIVPDKLVYNYLMILYQKAGQPEKILSTFEEMRESGISADKFAYFTLIESYITM 234
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+D + +K+L E + W +Y + N Y K+ L KA +KK+EE + A + S
Sbjct: 235 NDLDAAEKVLA--ELQKVAPVHWSLYTLMANNYIKLKLFGKAEVAIKKAEEGMDKADLRS 292
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y +L+L+ G +V R+W+ K K LN Y ++ +L +DD ES ++IF+EW
Sbjct: 293 WY-ALLSLHAHCGNSTEVKRVWKSLKSTFKKCLNRSYLVMLQALSMIDDFESLQQIFQEW 351
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+S YD RI N +I Y G++++AE + +G H A Y S +
Sbjct: 352 QSSHEHYDKRIANVVIKAYLDKGMIDEAEAIRQSTMAQGH-WHEGMVCIFAEFYLDKSDV 410
Query: 241 HKAVEAMKKVLAAYQTLV---KWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ A+E ++ + +V KW PS E ++ L ++++ D GAE+F+E L
Sbjct: 411 NAALEILRDA----KNMVMARKWVPSKELVSRFLKHYEESNDASGAESFLECL 459
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS---AYNVILTLYGKYG 134
P+++ Y+ + N YGK GL K L E++K + YN ++ LY K G
Sbjct: 145 PDISKSVKTYSCLLNCYGKHGLAYKGLEFY----EKMKAKSIVPDKLVYNYLMILYQKAG 200
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ + +L + E+ + + Y +I S + ++DL++AEK+ E + A + + +
Sbjct: 201 QPEKILSTFEEMRESGISADKFAYFTLIESYITMNDLDAAEKVLAELQKVAPVHWS-LYT 259
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
+ + Y + L KAE + + + ++SWY L
Sbjct: 260 LMANNYIKLKLFGKAEVAIKKAEEGMDKADLRSWYAL 296
>gi|224085447|ref|XP_002307578.1| predicted protein [Populus trichocarpa]
gi|222857027|gb|EEE94574.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 152/309 (49%), Gaps = 13/309 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM + G + + YN ML +Y G EK+ ++ E+++ + D TY L+A A
Sbjct: 164 MEKMSECGFLKNALPYNHMLSVYVANGQLEKVAEIIQELKKK-TSPDVVTYNMWLTACAS 222
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+D E +K+ ++ DP DWV Y+T+ N Y K L+KA LK+ E++
Sbjct: 223 QNDVETAEKVFMELKKSKLDP----DWVTYSTLTNLYIKKECLEKAAYTLKEVEKR-ASK 277
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKI 176
K Y+ +L+L+ KD + R W K +N+ Y +ISSL+KL + AE +
Sbjct: 278 KNRVTYSSLLSLHANMKDKDGLHRTWNKMKSVFNKMNDAEYNCMISSLVKLGEFGGAENL 337
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ EWES + D+R+ N ++ Y +E AEN KG +W L G+ +
Sbjct: 338 YNEWESVSATRDSRVSNIVLASYINRNQMEDAENFCQRMVQKGITPCYTTWELLTCGHLK 397
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
Q+ K +E KK L + + KW P + ++ GDI GAE + +L D G +
Sbjct: 398 TEQMEKVLENFKKALCSVR---KWTPDKRLIGDIFKNLEERGDIEGAEKLLVILRDAGHV 454
Query: 297 PTDLQDKLL 305
T + + LL
Sbjct: 455 STMIYNSLL 463
>gi|242066836|ref|XP_002454707.1| hypothetical protein SORBIDRAFT_04g035970 [Sorghum bicolor]
gi|241934538|gb|EES07683.1| hypothetical protein SORBIDRAFT_04g035970 [Sorghum bicolor]
Length = 527
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 146/292 (50%), Gaps = 3/292 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +++ GL +N ++KLY T +EK S++ M+ N I + +Y ++ A+
Sbjct: 180 MAQLQSCGLPVDPHSFNEIMKLYIATFQYEKALSVIDLMKRNNIPRNVLSYNLWMNVCAE 239
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S + + M D V + W Y T+ N + K GL KA A L+K+E ++
Sbjct: 240 VSGVAPVQSVFQEMLNDETVEVGWSTYCTLANIFRKNGLNTKAQACLRKAETKLSPTG-R 298
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ ++T Y D V+R+WE K ++ Y + +K+ D+ AE IF
Sbjct: 299 LGYSFVMTCYAALNDSDGVMRLWEASKSVPGRIPAANYMTAMLCSIKVGDISQAEWIFGS 358
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE+ +D R+ N L+ Y RN +EKAE L H KG + K+W L GY Q+ Q
Sbjct: 359 WEAGCRKHDVRVSNVLLGAYVRNRWIEKAERLHLHMLEKGARPNYKTWEILMEGYVQSRQ 418
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ KAV MKK L+ ++ W+P +E + A +F+++G A +I++L
Sbjct: 419 MDKAVGCMKKGLSLLKS-CHWRPPLELMEAIGKHFEEQGSADDAYRYIKVLQ 469
>gi|224064562|ref|XP_002301516.1| predicted protein [Populus trichocarpa]
gi|222843242|gb|EEE80789.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 154/302 (50%), Gaps = 14/302 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM + L T++ +N+++ L+ + G EK+ ++ EM++ G++ +TY + +Y
Sbjct: 122 FEKMDKMKLLSTSMPFNNLMTLHMRLGQPEKVLGIVQEMKQRGVSPGTFTYNIWMQSYGC 181
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-- 118
+D EG+ ++L M+ D W Y+ + Y K GL DKA + L+K EEQI+ +
Sbjct: 182 LNDFEGVQRVLDEMKTDGKENFSWTTYSNLATIYVKAGLFDKAESALRKLEEQIECGRDC 241
Query: 119 ----------VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKL 167
AY+ +++LY +V R+W K + + N Y NV+ +L KL
Sbjct: 242 DFQKKRRHDADREAYHFLISLYAGTSNLSEVHRVWNSLKSSFRTTTNISYLNVLQALAKL 301
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
D+E K F+EWES YD + N I + + E+A ++ + + + + K+
Sbjct: 302 KDVEGILKCFKEWESSCHSYDMGLANVAIRACLEHDMYEEAASIFDEALKRTKGLFFKAR 361
Query: 228 YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ +N Q A++ MK + + ++W+P ++++A L+YF+D D+ GAE
Sbjct: 362 EMFMVFFLKNHQPDLALKHMKAAFSEAKE-IEWQPDQKTVSAFLNYFEDGKDVDGAERLC 420
Query: 288 EL 289
++
Sbjct: 421 KI 422
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 90/195 (46%), Gaps = 6/195 (3%)
Query: 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD 77
+ +K K G F+ +M M++ + + + L A +GI +
Sbjct: 36 TCIKKLRKYGRFDHAIEVMEWMQKRKMNFSHVDHAVYLDLTAKT---KGIAAAENYFDNL 92
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137
P + V Y+T+ N Y K + +KAL + +K +++K + +N ++TL+ + G+ +
Sbjct: 93 PPSVQNHVTYSTLLNCYCKELMSEKALTLFEKM-DKMKLLSTSMPFNNLMTLHMRLGQPE 151
Query: 138 DVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL-CYDTRIPNFL 195
VL I E+ ++ V Y + S L+D E +++ +E ++ + + L
Sbjct: 152 KVLGIVQEMKQRGVSPGTFTYNIWMQSYGCLNDFEGVQRVLDEMKTDGKENFSWTTYSNL 211
Query: 196 IDVYCRNGLLEKAEN 210
+Y + GL +KAE+
Sbjct: 212 ATIYVKAGLFDKAES 226
>gi|255559466|ref|XP_002520753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540138|gb|EEF41715.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 171/334 (51%), Gaps = 8/334 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMRD + + YN M+ LY G F+K ++ E++++ T D T+ LS A
Sbjct: 160 MEKMRDCSFVKNPLPYNHMISLYIADGEFDKAKRIVEELKKS-TTPDVVTFNLWLSMCAS 218
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D E K+L ++ + DW+ Y+T+ N Y K LL+ A++ LK+ E++ K
Sbjct: 219 LNDVESAKKVLLELKKL-KIEADWITYSTLTNLYLKNKLLEDAVSTLKEMEKR-ASRKNR 276
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
AY+ +L+LY G KD V RIW K +N+ Y ++SSL+KL+++E AE ++ E
Sbjct: 277 LAYSSLLSLYTNMGDKDAVHRIWNKMKSLFCKMNDAEYTCMLSSLIKLEEIEKAENLYTE 336
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES + D ++ N L+ Y +E +EN KG +W L G+ + Q
Sbjct: 337 WESVSGTGDPQVANILLAAYINRNQIEDSENFYRRMVEKGVCPCYTTWELLTWGHLKTKQ 396
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ K ++ KK + +T W P + +++G+ GAE F+ +L + G++ T+
Sbjct: 397 MEKVLDCFKKAITIVKT---WSPDKRLVREVFKILEEKGNAEGAEEFLVMLRNAGYVSTE 453
Query: 300 LQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
+ + LL + GK L + + + +EET
Sbjct: 454 IYNSLLRTYAKAGKMPLIVTERMKKDGVELDEET 487
>gi|147819856|emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
Length = 494
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 155/307 (50%), Gaps = 4/307 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K+++L + + YN+M+ LY + G EK+ SL+HEMEE I D YTY +++YA
Sbjct: 152 FKKLKELNFVSSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYAS 211
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E ++++L M+ V DW Y + N Y G KA L+K EQ K
Sbjct: 212 VKDFEAVEQVLEKMKKR-GVERDWFTYGNLANIYVDAGHTKKANYALQKL-EQNKNLHDP 269
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
A+ +++ LY + + V R WE K A K+ N Y ++ +L KL D+ EK F+E
Sbjct: 270 EAFRMLINLYARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKE 329
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N +++ Y ++E+A L +G E+ +K+ Y + Q
Sbjct: 330 WESGCSTYDVRLSNVMLESYLNREMIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQ 389
Query: 240 IHKAVEAMKK-VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A++ + A KW P+ E++ L+YF++ D+ AE F E + + +
Sbjct: 390 LDLAMKYLDMGASKADPENNKWFPTEETITMFLEYFEEVKDVDSAEKFCETMRKISRLDS 449
Query: 299 DLQDKLL 305
+ D LL
Sbjct: 450 KIYDSLL 456
>gi|125579556|gb|EAZ20702.1| hypothetical protein OsJ_36321 [Oryza sativa Japonica Group]
Length = 491
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 160/306 (52%), Gaps = 7/306 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G + +N M+ LY +G EK+ ++ E+ I D TY L+ +
Sbjct: 144 LEEMAKAGYLTCALPFNHMMSLYMSSGELEKVPEMIKELRRYTIP-DLVTYNIWLTYCSK 202
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + +K+ +M+ D V DW+ ++ +G+ Y GL K L + E++ K
Sbjct: 203 KNSVKAAEKVYDLMK-DERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRA-SRKER 260
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
+AY+ +LTLY + ++ R+W ++ + ++ Y+ +++SL + D+ AE + E
Sbjct: 261 AAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSE 320
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES + D+RIPN ++ Y +NG++EKAE ++H KG + +W GY + +
Sbjct: 321 WESASGTRDSRIPNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDGR 380
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ K +E +KK L+ L KW P+ + A +++GDI AE + + + G++ T+
Sbjct: 381 MDKVLECLKKALSC---LEKWDPNPQLATAIYSQIEEKGDIEAAEKLLVMFREAGYVTTE 437
Query: 300 LQDKLL 305
+ + +L
Sbjct: 438 IYNSVL 443
>gi|108862755|gb|ABA99305.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215704853|dbj|BAG94881.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215712260|dbj|BAG94387.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 160/306 (52%), Gaps = 7/306 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G + +N M+ LY +G EK+ ++ E+ I D TY L+ +
Sbjct: 167 LEEMAKAGYLTCALPFNHMMSLYMSSGELEKVPEMIKELRRYTIP-DLVTYNIWLTYCSK 225
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + +K+ +M+ D V DW+ ++ +G+ Y GL K L + E++ K
Sbjct: 226 KNSVKAAEKVYDLMK-DERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKR-ASRKER 283
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
+AY+ +LTLY + ++ R+W ++ + ++ Y+ +++SL + D+ AE + E
Sbjct: 284 AAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSE 343
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES + D+RIPN ++ Y +NG++EKAE ++H KG + +W GY + +
Sbjct: 344 WESASGTRDSRIPNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDGR 403
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ K +E +KK L+ L KW P+ + A +++GDI AE + + + G++ T+
Sbjct: 404 MDKVLECLKKALSC---LEKWDPNPQLATAIYSQIEEKGDIEAAEKLLVMFREAGYVTTE 460
Query: 300 LQDKLL 305
+ + +L
Sbjct: 461 IYNSVL 466
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 10/187 (5%)
Query: 124 NVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
N ++ KY + L I W + +++L + + + K+ L SAEK FE+
Sbjct: 79 NRVVRELRKYRRFKHALEICEWMRTQPEMRLLPGDHAVHLDLVAKVRGLPSAEKFFEDMP 138
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+A T N L+ Y ++G +KAE ++ G + ++ + Y + ++
Sbjct: 139 ERAKGPST--CNALLHAYVQHGRRDKAEAMLEEMAKAGYLTCALPFNHMMSLYMSSGELE 196
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
K E +K+ L Y P + + L Y + + AE +L+ D+ +P +
Sbjct: 197 KVPEMIKE-LRRYTI-----PDLVTYNIWLTYCSKKNSVKAAEKVYDLMKDERVVPDWMT 250
Query: 302 DKLLDNV 308
LL ++
Sbjct: 251 FSLLGSI 257
>gi|125536853|gb|EAY83341.1| hypothetical protein OsI_38557 [Oryza sativa Indica Group]
Length = 444
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 160/306 (52%), Gaps = 7/306 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G + +N M+ LY +G EK+ ++ E+ I D TY L+ +
Sbjct: 97 LEEMAKAGYLTCALPFNHMMSLYMSSGELEKVPEMIKELRRYTIP-DLVTYNIWLTYCSK 155
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + +K+ +M+ D V DW+ ++ +G+ Y GL K L + E++ K
Sbjct: 156 KNSVKAAEKVYDLMK-DERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKR-ASRKER 213
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
+AY+ +LTLY + ++ R+W ++ + ++ Y+ +++SL + D+ AE + E
Sbjct: 214 AAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSE 273
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES + D+RIPN ++ Y +NG++EKAE ++H KG + +W GY + +
Sbjct: 274 WESASGTRDSRIPNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDGR 333
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ K +E +KK L+ L KW P+ + A +++GDI AE + + + G++ T+
Sbjct: 334 MDKVLECLKKALSC---LEKWDPNPQLATAIYSQIEEKGDIEAAEKLLVMFREAGYVTTE 390
Query: 300 LQDKLL 305
+ + +L
Sbjct: 391 IYNSVL 396
>gi|225450579|ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial [Vitis vinifera]
gi|296089781|emb|CBI39600.3| unnamed protein product [Vitis vinifera]
Length = 498
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 155/307 (50%), Gaps = 4/307 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K+++L + + YN+M+ LY + G EK+ SL+HEMEE I D YTY +++YA
Sbjct: 156 FKKLKELNFVSSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYAS 215
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E ++++L M+ V DW Y + N Y G KA L+K EQ K
Sbjct: 216 VKDFEAVEQVLDKMKKR-GVERDWFTYGNLANIYVDAGHTKKANYALQKL-EQNKNLHDP 273
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
A+ +++ LY + + V R WE K A K+ N Y ++ +L KL D+ EK F+E
Sbjct: 274 EAFRMLINLYARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKE 333
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N +++ Y ++E+A L +G E+ +K+ Y + Q
Sbjct: 334 WESGCSTYDVRLSNVMLESYLNREIIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQ 393
Query: 240 IHKAVEAMKK-VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A++ + A KW P+ E++ L+YF++ D+ AE F E + + +
Sbjct: 394 LDLAMKYLDMGASKADPENNKWFPTEETITMFLEYFEEVKDVDSAEKFCETMRKISRLDS 453
Query: 299 DLQDKLL 305
+ D LL
Sbjct: 454 KIYDSLL 460
>gi|226530677|ref|NP_001151760.1| tetratricopeptide-like helical [Zea mays]
gi|195649553|gb|ACG44244.1| tetratricopeptide-like helical [Zea mays]
gi|223942137|gb|ACN25152.1| unknown [Zea mays]
gi|413916645|gb|AFW56577.1| Tetratricopeptide-like helical [Zea mays]
Length = 501
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 165/318 (51%), Gaps = 18/318 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE----NGITYDRY-TYCTRL 55
+ +M +G + +N M+ LY TG E++ ++ E+ + +TY+ + TYC++
Sbjct: 155 LAEMARVGYLTCALPFNHMMSLYMATGELERVPEMIKELRRYTLPDLVTYNIWLTYCSKK 214
Query: 56 SAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
+ A +K+ +M+ D V DW+ ++ +G+ Y GL + L + E++
Sbjct: 215 DSVKSA------EKVFGLMK-DDCVVPDWMTFSLLGSIYINAGLHVEGRNALVEMEKR-A 266
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAE 174
K +AY+ +LTLY + ++ R+W + + ++ Y+ +++SLL+ DD+ +AE
Sbjct: 267 SRKERAAYSSLLTLYASLSDRGNLDRVWNKMRGTFRKFSDTEYKCMLTSLLRFDDIAAAE 326
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
IF EWES + D+RIPN ++ Y +NG+++KAE+ ++H KG + +W GY
Sbjct: 327 SIFSEWESTSGTRDSRIPNTILSYYIKNGMIKKAESFLDHIVEKGVKPSYSTWEAFVWGY 386
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ K +E MKK L+ L KW+P+ E A + GDI AE + + D
Sbjct: 387 -LGDKTDKVLECMKKALSC---LEKWEPNHELATAIFSQIEKTGDIEAAEKLLVIFRDAE 442
Query: 295 FIPTDLQDKLLDNVQNGK 312
++ T++ + +L K
Sbjct: 443 YVTTEMYNSVLRTYAEAK 460
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 10/187 (5%)
Query: 124 NVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
N ++ KYG+ L I W + +++L + + + K+ L SA K FE+
Sbjct: 67 NRVVRELRKYGRFKHALEICEWMRTQPEMRLLPGDHAVHLDLVAKVRGLASATKFFEDMP 126
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+A T N L+ Y +NG EKAE ++ G + ++ + Y ++
Sbjct: 127 ERAKGPST--CNALLHAYVQNGAREKAEAMLAEMARVGYLTCALPFNHMMSLYMATGELE 184
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
+ E +K+ L Y P + + L Y + + AE L+ D +P +
Sbjct: 185 RVPEMIKE-LRRYTL-----PDLVTYNIWLTYCSKKDSVKSAEKVFGLMKDDCVVPDWMT 238
Query: 302 DKLLDNV 308
LL ++
Sbjct: 239 FSLLGSI 245
>gi|358344191|ref|XP_003636175.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355502110|gb|AES83313.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 790
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 148/296 (50%), Gaps = 17/296 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ MR ++ +N M+ L +++K+D L+ EM+E I D YTY LS+
Sbjct: 368 LEVMRSKRYLTHSLPFNLMMTLSMNLKDYDKVDMLVSEMKEKNIQLDIYTYNIWLSSCGS 427
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M DP + +W ++T+ Y K+ L +KA LKK+E +I G +
Sbjct: 428 QGSIEKMEQVFEQMLKDPTIIPNWSTFSTMAAMYIKMELFEKAQECLKKAEGRILG-RDK 486
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
++ +L+LYG G KD+V R+W YK + N GY VISS +++DD+E AEK++EE
Sbjct: 487 VPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLGYHAVISSFVRMDDIERAEKLYEE 546
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W S D+RI N LI Y + G +K + H G + +W L+ G+ +
Sbjct: 547 WVSVRPSDDSRIGNLLISWYLKKGKSDKVFSFFKHMSEGGGCPNSTTWELLSEGHIAEKR 606
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ +A+ ++K + WKP + + AE IELL G+
Sbjct: 607 VSEALSCLEKAFMTSDS-KSWKP--------------KANKNCAEVLIELLRKSGY 647
>gi|395146485|gb|AFN53641.1| pentatricopeptide repeat-containing protein [Linum usitatissimum]
Length = 516
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 145/298 (48%), Gaps = 9/298 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM L R ++ +N+++ +Y + G EK+ L+ +M++ + +TY + +
Sbjct: 167 FQKMDKLKFFRNSLPFNNLMSMYMRLGQQEKVPELVSQMKQMNLPPCTFTYNIWIQSLGH 226
Query: 61 ASDHEGIDKILTMMEADPNVA--LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D EGI K+L M D N +W Y+ + Y G ++A LK EE+I
Sbjct: 227 MRDFEGIKKVLEEMRNDVNFGNNFNWTTYSNLAAVYTSAGEFERAKLALKMMEERIDSHD 286
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N AY+ +LTLYG ++V R+W K K +V N Y ++ +L +L D+E K+F
Sbjct: 287 RN-AYHFLLTLYGGIADLEEVHRVWGCLKAKFNQVTNASYLVMLQALARLKDVEGISKVF 345
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EEWES YD R+ N I VY G+ +AE + + + + K+ L +
Sbjct: 346 EEWESVCTSYDMRVANVAIRVYLEKGMYNEAEAVFDGAMERTPGPYFKTREMLMVSLLKR 405
Query: 238 SQIHKAVEAMKKVLAAYQTLVK-----WKPSVESLAACLDYFKDEGDIGGAENFIELL 290
Q+ A++ MK K W+PS E + A YF++E D+ GAE ++L
Sbjct: 406 RQLEPALKQMKAAFTEVGQNEKGHEKEWRPSAEIVNAFFGYFEEEKDVEGAEKMWKIL 463
>gi|242083618|ref|XP_002442234.1| hypothetical protein SORBIDRAFT_08g016710 [Sorghum bicolor]
gi|241942927|gb|EES16072.1| hypothetical protein SORBIDRAFT_08g016710 [Sorghum bicolor]
Length = 501
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 166/318 (52%), Gaps = 17/318 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE----NGITYDRY-TYCTRL 55
M +M G + +N M+ LY +G E++ ++ E+ + +TY+ + TYC++
Sbjct: 154 MAEMARAGYLTCALPFNHMMSLYMASGELERVPEMIKELRRYTVPDLVTYNMWLTYCSKK 213
Query: 56 SAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
+ A +K+ +M+ D V DW+ ++ +G+ Y GL + L + E ++
Sbjct: 214 KSVKSA------EKVFALMK-DDRVVPDWMTFSLLGSIYINAGLHVEGRNALVEME-KMA 265
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAE 174
K +AY+ +LTLY + ++ R+W ++ + ++ Y+ +++SL + +D+ +AE
Sbjct: 266 SRKERAAYSSLLTLYASLSDRGNLDRVWNKMRETFRKFSDTEYKCMLTSLTRFNDIAAAE 325
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ EWES + D+RIPN ++ Y +NG++EKAE+ + KG + +W GY
Sbjct: 326 GLYREWESASGTRDSRIPNTILSYYIKNGMIEKAESFLGQIVEKGVKPSYSTWELFIWGY 385
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+++ K +E +KK L+ +L KW+P+ E A + GDI AE + + D G
Sbjct: 386 LGDNKTDKVLECLKKALS---SLEKWEPNHELATAIFSQVEKTGDIEAAEKLLVVFRDAG 442
Query: 295 FIPTDLQDKLLDNVQNGK 312
++ T++ + +L K
Sbjct: 443 YVTTEMYNSVLRTYAEAK 460
>gi|326505170|dbj|BAK02972.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 510
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 167/312 (53%), Gaps = 18/312 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGI----TYDRY-TYCTRL 55
+++M D G + +N M+ LY G EK+ ++ E+ I TY+ + TYC+R
Sbjct: 162 LKEMADAGYLTCALPFNHMMSLYMSVGELEKVPEMIKELRRYTIPDLVTYNIWLTYCSRK 221
Query: 56 SAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
++ A +K+ +M+ D V DW+ ++ + + Y GL K L + E++
Sbjct: 222 NSVKSA------EKVFDLMK-DDRVVPDWMTFSLLASIYINAGLHVKGRDALVEMEKR-A 273
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAE 174
K +AY+ +LT+Y + ++ R+W ++ + ++ Y+ +++SL + D+ +AE
Sbjct: 274 SRKERAAYSSLLTMYASLSDRGNLDRVWSKMRQTFRKFSDAEYKCMLTSLTRFGDIAAAE 333
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ EWESQ+ D+RIPN ++ Y +NG +EKAE+ + + KG + +W GY
Sbjct: 334 FVYGEWESQSGTKDSRIPNTILSFYIKNGEMEKAESFLQYIVQKGVKPSYSTWELFVWGY 393
Query: 235 RQN-SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
N + K +E +KK L+ +L KW+P+ + +AA + +GDI AE + +L
Sbjct: 394 LGNDERTDKVMECLKKALS---SLEKWEPNPQLVAALFSQIEKKGDIEAAEELLVVLRGA 450
Query: 294 GFIPTDLQDKLL 305
G++ T++ + +L
Sbjct: 451 GYVTTEIYNLVL 462
>gi|356536769|ref|XP_003536907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Glycine max]
Length = 516
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 164/337 (48%), Gaps = 14/337 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M KM + L + YN M+ LY G EK+ ++ E++ N + D T+ L+A A
Sbjct: 169 MLKMSECDLLINPLPYNHMISLYISNGKLEKVPKIIQELKMNT-SPDIVTFNLWLAACAS 227
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+D E +++L ++ DP DWV Y+T+ N Y K L+KA A +K+ E +
Sbjct: 228 QNDVETAERVLLELKKAKIDP----DWVTYSTLTNLYIKNASLEKAGATVKEMENRT-SR 282
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
K AY+ +L+L+ G KDDV RIWE K + + +N N Y +ISSLLKL D AE +
Sbjct: 283 KTRVAYSSLLSLHTNMGNKDDVNRIWEKMKASFRKMNDNEYICMISSLLKLGDFAGAEDL 342
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ EWES + D R+ N L+ Y +E AE+ N KG +W GY +
Sbjct: 343 YREWESVSGTNDVRVSNILLGSYINQDQMEMAEDFCNQIVQKGVIPCYTTWELFTWGYLK 402
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ K ++ K A ++ KW P + +++ GAE + +L + G +
Sbjct: 403 RKDVEKFLDYFSK---AISSVTKWSPDQRLVQEAFKIIEEQAHTKGAEQLLVILRNAGHV 459
Query: 297 PTDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
T++ + L GK + + +++ +EET
Sbjct: 460 NTNIYNLFLKTYATAGKMPMIVAERMRKDNVKLDEET 496
>gi|357151797|ref|XP_003575907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Brachypodium distachyon]
Length = 501
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 167/312 (53%), Gaps = 18/312 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGI----TYDRY-TYCTRL 55
+++M D G + +N M+ +Y +G EK+ ++ E+ I TY+ + TYC+R
Sbjct: 154 LREMADAGYLTCALPFNHMMSMYMSSGELEKVPEMIKELRRYTIPDLVTYNIWLTYCSRK 213
Query: 56 SAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
++ A +K+ +M+ D V DW+ ++ + + Y GL K L + E++
Sbjct: 214 NSVKTA------EKVFDLMK-DDKVFPDWMTFSLMASIYINAGLHVKGRDALVEMEKR-A 265
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAE 174
K +AY+ +LTLY + ++ R+W ++ + ++ Y+ +++SL + D+ +AE
Sbjct: 266 SRKERTAYSSLLTLYASLSDRGNLDRVWSKMREIFRKFSDTEYKCMLTSLTRFGDITAAE 325
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ EWES++ D+RIPN ++ + +NG +E AE+ + H KG + +W GY
Sbjct: 326 SVYSEWESESGTRDSRIPNTILSFHIKNGKMEMAESFLQHIMQKGVKPSYSTWELFVWGY 385
Query: 235 RQN-SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
N +I K +E +KK L+ +L KW+P+ + +AA + GDI AE + +L
Sbjct: 386 LGNDERIDKILECLKKALS---SLDKWEPNPQLVAALFSLIEKRGDIEAAEELLVVLRGA 442
Query: 294 GFIPTDLQDKLL 305
G++ T++ + +L
Sbjct: 443 GYVTTEIYNSVL 454
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 10/187 (5%)
Query: 124 NVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
N ++ KY + L I W + +K+L + + + K+ L SAEK FE+
Sbjct: 66 NRVVRELRKYRRFKHALEICEWMRTQPEMKLLPGDHAVHLDLVAKVRGLASAEKFFEDVP 125
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+A T N L+ Y +NG+ +KAE ++ G + ++ + Y + ++
Sbjct: 126 ERAKGPST--CNALLHAYVQNGVRDKAEAMLREMADAGYLTCALPFNHMMSMYMSSGELE 183
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
K E +K+ L Y P + + L Y + + AE +L+ D P +
Sbjct: 184 KVPEMIKE-LRRYTI-----PDLVTYNIWLTYCSRKNSVKTAEKVFDLMKDDKVFPDWMT 237
Query: 302 DKLLDNV 308
L+ ++
Sbjct: 238 FSLMASI 244
>gi|115436124|ref|NP_001042820.1| Os01g0301000 [Oryza sativa Japonica Group]
gi|57899052|dbj|BAD87826.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113532351|dbj|BAF04734.1| Os01g0301000 [Oryza sativa Japonica Group]
gi|215694668|dbj|BAG89859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215706899|dbj|BAG93359.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 522
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 160/324 (49%), Gaps = 10/324 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM +LG++ +T+ N+++ LY K G K+ SL EM+ + D T C +S+YA
Sbjct: 181 RKMDELGISSSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAAL 240
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + + ++L ME + VAL W Y+T+ + Y ++++A + LKK E I
Sbjct: 241 NKIDTVGEVLKEME-EKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQAGRQ 299
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ +++LY G +V R+W L K KV N Y ++ +L KL+D + ++I+E+W
Sbjct: 300 PFDFLMSLYASVGNLSEVNRVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDW 359
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES YD R+ N + + RNGL ++AE L K KG E K+ Y +
Sbjct: 360 ESNYENYDARLTNMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCELFLEHYMGKGDM 419
Query: 241 HKA---VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A VE M K+ K K E ++ L YF++ D+ GAE F+ L G I
Sbjct: 420 TSALNWVENMTKL-----PRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCID 474
Query: 298 TDLQDKLLDNVQNGKSNLETLREL 321
+ LL ++R++
Sbjct: 475 GKAYESLLRTYLAAGKTSRSIRQM 498
>gi|125525544|gb|EAY73658.1| hypothetical protein OsI_01545 [Oryza sativa Indica Group]
Length = 522
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 160/324 (49%), Gaps = 10/324 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM +LG++ +T+ N+++ LY K G K+ SL EM+ + D T C +S+YA
Sbjct: 181 RKMDELGISSSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMSSYAAL 240
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + + ++L ME + VAL W Y+T+ + Y ++++A + LKK E I
Sbjct: 241 NKIDTVGEVLKEME-EKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQAGRQ 299
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ +++LY G +V R+W L K KV N Y ++ +L KL+D + ++I+E+W
Sbjct: 300 PFDFLMSLYASVGNLSEVNRVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQIYEDW 359
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES YD R+ N + + RNGL ++AE L K KG E K+ Y +
Sbjct: 360 ESNYENYDARLTNMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCELFLEHYMGKGDM 419
Query: 241 HKA---VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A VE M K+ K K E ++ L YF++ D+ GAE F+ L G I
Sbjct: 420 TSALNWVENMTKL-----PRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCID 474
Query: 298 TDLQDKLLDNVQNGKSNLETLREL 321
+ LL ++R++
Sbjct: 475 GKAYESLLRTYLAAGKTSRSIRQM 498
>gi|255548417|ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545745|gb|EEF47249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 156/294 (53%), Gaps = 8/294 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M + +++ +N+++ +Y + G EK+ L+ EM++ ++ +TY + +Y
Sbjct: 162 FQEMDEKKFLYSSLPFNNLMSMYMRLGQPEKVPPLVDEMKKRKVSPCSFTYNIWMQSYGC 221
Query: 61 ASDHEGIDKILTMMEADPNV-ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D +G+D++L + D L W Y+ + Y K G+ +KA + LKK E I G +
Sbjct: 222 LNDFQGVDRVLREIVNDGGKDNLQWTTYSNLATIYLKAGIFEKAESALKKLE-AIMGFRN 280
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFE 178
AY+ ++++Y G ++V R+W L K + ++NN Y ++ +L KL D+E K F
Sbjct: 281 REAYHFLISIYAGTGNSNEVNRVWGLLKSSFNMINNLSYLVMLQALAKLKDVEGVAKCFR 340
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
EWES YD RI N I V+ ++ + E+AE + + + R K+ +
Sbjct: 341 EWESGCTNYDMRIANVAIRVFLQHDMYEEAELIFDDALKRTRGPFFKARERFMLFFL--- 397
Query: 239 QIHKAVEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+IH+ A+K + AA+ K WKP E++ A DYF+ E D+ GAE ++L
Sbjct: 398 KIHQLDLALKHMRAAFSESEKHEWKPLQETVNAYFDYFRTEKDVDGAEKLSKIL 451
>gi|115457716|ref|NP_001052458.1| Os04g0320200 [Oryza sativa Japonica Group]
gi|32490390|emb|CAE04700.1| OSJNBa0041M06.2 [Oryza sativa Japonica Group]
gi|38344779|emb|CAE01505.2| OSJNBb0026L04.10 [Oryza sativa Japonica Group]
gi|113564029|dbj|BAF14372.1| Os04g0320200 [Oryza sativa Japonica Group]
gi|125543501|gb|EAY89640.1| hypothetical protein OsI_11170 [Oryza sativa Indica Group]
gi|125589896|gb|EAZ30246.1| hypothetical protein OsJ_14297 [Oryza sativa Japonica Group]
gi|215767374|dbj|BAG99602.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 524
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 46/332 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M KM++L A T + YNS++ LY K EK+ S++ +M+ + + D YTY + A A
Sbjct: 142 MGKMKELNFAFTAMCYNSLMTLYTKVNQHEKVPSVIQDMKADDVLPDIYTYNVWMRALAA 201
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +G+++++ M+ D V DW Y+ + + Y GL +KA A LK+ E+ +
Sbjct: 202 RVDIKGVERVIEEMKRDGRVTPDWTTYSNLASIYVDAGLFEKAEAALKELEKWNTSNDLE 261
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY ++TLY + +V R+W L + + N Y N+I +L L DL AE F+E
Sbjct: 262 -AYQFLITLYARTQNLVEVHRVWRSLKRNQPRRANMSYLNMIQALANLKDLPGAEACFKE 320
Query: 180 WESQALC-------------------------------------YDTRIPNFLIDVYCRN 202
WE+Q + YD R+ N +I Y
Sbjct: 321 WEAQYINPPKTNTKAPGTAETSSNESDVKATKDKGTDGELKHPKYDIRVANAMIKAYITE 380
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK----AVEAMKKVLAAYQTLV 258
G+ +KA + K++G ++ K+W Y + + A A+KK +A +
Sbjct: 381 GMFDKAVAVKKRAKMRGGRLNAKTWEIFMEHYLKEGDLKMVHWCADRAIKKGHSAGRI-- 438
Query: 259 KWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
W P E +DYF+ D+ GAE F+E+L
Sbjct: 439 -WVPPHEVTETLMDYFEKNKDVDGAEKFVEVL 469
>gi|297808773|ref|XP_002872270.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318107|gb|EFH48529.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 492
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 3/306 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+K+ LG T +N M+KLY +G +EK+ ++ M+ N I + +Y ++A
Sbjct: 163 MEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKVNKIPRNVLSYNLWMNACCQ 222
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S ++ + M D +V + W T+ N Y K G +KA +L+ +E+ + +
Sbjct: 223 VSGVTAVETVYREMVGDKSVEVGWSSLCTLANVYIKGGFDEKAKLVLENAEKLLNRSN-R 281
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++TLY G K+ V+R+WE K ++ Y V+SSL+K+ DLE AE++F E
Sbjct: 282 LGYFFLITLYASLGDKEGVVRLWEASKLVCGRISCANYICVLSSLVKIGDLEEAERVFNE 341
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE+Q YD R+ N L+ Y RNG + KAE+L +G + K+W L G+ +
Sbjct: 342 WEAQCFNYDVRVSNVLLGAYMRNGEIRKAESLHARVLERGGNPNYKTWEILMEGWVKCQS 401
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA+ AM + + W+PS + A YF++E I A +I L+ G
Sbjct: 402 MEKAIVAMHRAFELMKG-CHWRPSESIVMAIAKYFEEEEKIEEANTYIRDLHHLGLASLP 460
Query: 300 LQDKLL 305
L LL
Sbjct: 461 LYRLLL 466
>gi|255581580|ref|XP_002531595.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528791|gb|EEF30798.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 176
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
EKIFEEWES+ L YD RIPN LI Y R GL+EKAE VN +GR+ +WYYLATG
Sbjct: 20 EKIFEEWESRKLKYDIRIPNILISTYLRKGLMEKAETFVNRAISEGRKPDAITWYYLATG 79
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
Y QN+Q KAVE MKK L + + K S ESLA+CL+Y K +GD+ AE I+LL D
Sbjct: 80 YLQNNQTEKAVEMMKKALEVSGSKL--KSSSESLASCLEYLKGKGDLEKAEELIKLLLDN 137
Query: 294 GFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNE 330
I D+Q+KLL+N++ KS + + NS+ +E
Sbjct: 138 DIISLDIQEKLLNNIRAEKSQSDAISAFSDNSIFQSE 174
>gi|224130976|ref|XP_002320971.1| predicted protein [Populus trichocarpa]
gi|222861744|gb|EEE99286.1| predicted protein [Populus trichocarpa]
Length = 473
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 165/334 (49%), Gaps = 6/334 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM + T++ +N+++ L+ + EK+ ++ EM++ G++ +TY + +Y
Sbjct: 133 FEKMDKMKFLLTSLPFNNLISLHLRLDQPEKVLPIVQEMKQKGVSPCTFTYNMWMQSYGC 192
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D EG++++L M+ D W Y + Y K G DKA + LKK EEQI+
Sbjct: 193 LNDFEGVERVLDEMKMDGQKNFSWTTYTNLATIYVKAGHFDKAESALKKVEEQIE-RDYR 251
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
AY+ ++TLY +V R+W K N Y ++ +L KL D+E K F+E
Sbjct: 252 EAYHFLITLYAGTSNLGEVNRVWNSLKSNFHTTTNVSYLTMLHTLAKLKDVEGLLKCFKE 311
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-IHVKSWYYLATGYRQNS 238
WES YD R+ N I + + E+A L+ + LK E + + + +N
Sbjct: 312 WESSCHSYDMRLANVAIRACLEHDMYEEAA-LIFDDALKRTEGLFFNAREMFMVFFLKNH 370
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
Q+ A++ MK + + ++W+P ++++A YF+DE D+ GAE ++L + +
Sbjct: 371 QLDLALKHMKAAFSEVKE-IEWQPEPKTVSAFFAYFEDEKDVNGAERLCKILKHINRLDS 429
Query: 299 DLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEE 331
+ D LL + GK E + L + + N E
Sbjct: 430 NAYDLLLKTYIAAGKLAPEMRQRLEEDGIEINPE 463
>gi|357440753|ref|XP_003590654.1| WD repeat-containing protein [Medicago truncatula]
gi|355479702|gb|AES60905.1| WD repeat-containing protein [Medicago truncatula]
Length = 562
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 155/313 (49%), Gaps = 17/313 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M KM + G R+ V YN M+ LY G EK+ L E++ N + D T+ L+A A
Sbjct: 161 MSKMSECGFLRSPVPYNRMMSLYISNGKLEKVPKLFEELKVN-TSPDVVTFNLLLTACAS 219
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVG----LLDKALAMLKKSEEQ 113
+D E +++L ++ DP DWV Y+T+ N Y + L+KA + LK+ E++
Sbjct: 220 ENDVETAERVLLQLKKAKVDP----DWVTYSTLTNLYIRNASVDDCLEKAASTLKEMEKR 275
Query: 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLES 172
+ AY+ +L+L+ G D+V RIW K K+ ++ Y +ISSL+KL D
Sbjct: 276 T-SRETRVAYSSLLSLHANMGNVDEVNRIWGKMKACFCKMSDDEYVCMISSLVKLGDFAG 334
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
E +++EWES + D R+ N L+ Y G +E AE N KG + SW L
Sbjct: 335 VENLYKEWESVSGTNDVRVSNLLLTSYVDQGQMEMAEIFCNQLVEKGVCLSYSSWELLTR 394
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
GY + + K + K +++ + +W P + +++ I GAE + +L +
Sbjct: 395 GYLKKKDVKKFLHYFGKAISSVK---QWIPDPRLVQEAFTVIQEQAHIEGAEQLLVILRN 451
Query: 293 KGFIPTDLQDKLL 305
G + T++ + L
Sbjct: 452 AGHVNTNIYNLFL 464
>gi|116309055|emb|CAH66166.1| H0107B07.5 [Oryza sativa Indica Group]
Length = 524
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 46/332 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M KM++L A T + YNS++ LY K EK+ S++ +M+ + + D YTY + A A
Sbjct: 142 MGKMKELNFAFTAMCYNSLMTLYTKVNQHEKVPSVIQDMKADDVLPDIYTYNVWMRALAA 201
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +G+++++ M+ D V DW Y+ + + Y GL +KA A LK+ E+ +
Sbjct: 202 RVDIKGVERVIEEMKRDGRVTPDWTTYSNLASIYVDAGLFEKAEAALKELEKWNTSNDL- 260
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY ++TLY + +V R+W L + + N Y N+I +L L DL AE F+E
Sbjct: 261 EAYQFLITLYARTQNLVEVHRVWRSLKRNQPRRANMSYLNMIQALANLKDLPGAEACFKE 320
Query: 180 WESQALC-------------------------------------YDTRIPNFLIDVYCRN 202
WE+Q + YD R+ N +I Y
Sbjct: 321 WEAQYINPPKTNTKAPGTAETSSNESDVKATKDKGTDGELKHPKYDIRVANAMIKEYITE 380
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK----AVEAMKKVLAAYQTLV 258
G+ ++A + K++G ++ K+W Y + + A A+KK +A +
Sbjct: 381 GMFDQAVAVKKRAKMRGGRLNAKTWEIFMEHYLKEGDLKMVHWCADRAIKKGHSAGRI-- 438
Query: 259 KWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
W P E +DYF+ D+ GAE F+E+L
Sbjct: 439 -WVPPHEVTETLMDYFEKNKDVDGAEKFVEVL 469
>gi|413950397|gb|AFW83046.1| hypothetical protein ZEAMMB73_939845 [Zea mays]
Length = 453
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 141/273 (51%), Gaps = 3/273 (1%)
Query: 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP 78
+L Y + EK+ S++ M+ N I + +Y ++A A+ S + + + +M D
Sbjct: 183 LLHCYVMERDHEKVLSVIDLMKRNNIHRNVLSYNLWMNACAEVSGVDSVQSVFQVMLNDE 242
Query: 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDD 138
V + W Y T+ N + K GL +A A L K+E ++ Y+ ++T Y D
Sbjct: 243 TVKVGWSTYCTLANIFRKNGLNTEAQACLVKAEAKLSPTG-RLGYSFVMTCYAALNDSDG 301
Query: 139 VLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
V+R+WE K ++L Y +S +K+ D+ AE IF +WE+ +D R+ N L+
Sbjct: 302 VMRMWEASKSVPGRILTAYYMAAMSCSIKVGDISQAECIFGKWEAGCRKHDVRVSNVLLG 361
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
Y RN +EKAE L H KG + K+W L GY Q+ Q+ KAV MKK L+ ++
Sbjct: 362 AYVRNRWIEKAERLHLHMLEKGACPNYKTWEILMEGYVQSRQMDKAVGCMKKGLSLLKS- 420
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
W+P VE + A +F+++G A +I++L
Sbjct: 421 CHWRPPVELMEAIGKHFEEQGSADDAYRYIKVL 453
>gi|326502008|dbj|BAK06496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 159/320 (49%), Gaps = 4/320 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM +LG++ +T+ N+++ LY K G +K+ SL EM+E + D T C +++ A
Sbjct: 210 RKMDELGISSSTLPINNLMSLYMKLGQHKKVCSLFEEMKEKNVKPDNLTCCILMTSLAAL 269
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + ++++L ME V L W Y+T+ + Y GL++KA + LKK E ++
Sbjct: 270 NKIDDVEQVLKEMEEKDGV-LGWSAYSTLASIYQSAGLVEKAESALKKLEGLVQDRDGRQ 328
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ +++LY G +V R+W + K KV N Y +++ +LLKL+D + +++FEEW
Sbjct: 329 PFDFLMSLYASVGNLSEVKRVWGVVKATFPKVTNTSYFSMLQALLKLNDADYMKQVFEEW 388
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES YD ++ N + + +NG+ ++AE L K KG K+ Y +
Sbjct: 389 ESNHEFYDAKLTNVMTRAHLKNGMAKEAELLWEKAKEKGACFDSKTCELFLDHYMVAGDM 448
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
A+ ++ V + K + + YF+++ D+ GAE F L G I
Sbjct: 449 KSALNWVENVTKLPKKTAKL--DQDKIPKFSKYFEEQKDVQGAERFCRCLRALGCIDGKA 506
Query: 301 QDKLLDNVQNGKSNLETLRE 320
+ LL +LR+
Sbjct: 507 YESLLRTYLAAGETSRSLRQ 526
>gi|449470082|ref|XP_004152747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Cucumis sativus]
Length = 439
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 10/244 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M K+RD GL +YN M+KLY T EK+ ++ +M++N I + +Y ++A ++
Sbjct: 184 MVKLRDSGLVVNHHLYNEMMKLYVATYQNEKVPLVIKDMKQNQIPRNVLSYNLWMNACSE 243
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
I+ + M D NV + W T+ N Y + GL++KA A LK++E+++ K
Sbjct: 244 LYGVGSIELVFEEMLTDKNVQVGWSTMCTLANVYIQEGLVEKAFAALKEAEKKLSPCK-R 302
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-----YRNVISSLLKLDDLESAEK 175
Y ++TLY K+ V R+W +A K ++ Y ++ L+KL +++ AEK
Sbjct: 303 LGYFFLITLYASLKDKEGVFRVW----RASKAVSGNPTCANYICILLCLVKLGEIDKAEK 358
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+EWE YD R+ N L+ Y RNGLLEKAE+L H +G + K+W L G+
Sbjct: 359 VFKEWELNCRNYDIRVSNVLLGAYVRNGLLEKAESLHRHTLGRGGNPNYKTWEILMEGWV 418
Query: 236 QNSQ 239
++ Q
Sbjct: 419 RSQQ 422
>gi|413953408|gb|AFW86057.1| hypothetical protein ZEAMMB73_674343 [Zea mays]
Length = 596
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 160/345 (46%), Gaps = 60/345 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++L A T + +NS++ +Y K EK+ S++ +M+ + + D +TY + A A
Sbjct: 202 MEKMKELNFAFTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPDVFTYNVWMRALAA 261
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G+++++ M+ D VA DW Y+ + + Y + G+ +KA A LK+ E++ +
Sbjct: 262 LKDIPGVERVIEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAALKELEKRNTSNDIE 321
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY ++TLYG+ +V R+W K+ ++ N Y N+I L L DL +AE F+E
Sbjct: 322 -AYQFLITLYGRTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANLKDLSAAEACFKE 380
Query: 180 WESQALC-------------------------------------------------YDTR 190
WE++ + YD R
Sbjct: 381 WEARHIHPPKTNTKGSGADNTPGADPKSPSNPPNNQSGTKETGDETAEDLQPKHPKYDIR 440
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-----YYLATGYRQNSQIHKAVE 245
+ N +I Y G+L+KA + K++G ++ K+W +YL TG + + A
Sbjct: 441 VANAMIKAYITEGMLDKAVAMKKRAKMRGGRLNAKTWEIFMEHYLKTGDLKMAHWC-ADR 499
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
AMKK + + W P + YF++ D+ GAE ++ L
Sbjct: 500 AMKK---GHSSGRIWVPPPAVTETLMSYFEENKDVDGAERYVGAL 541
>gi|413953409|gb|AFW86058.1| hypothetical protein ZEAMMB73_674343 [Zea mays]
Length = 626
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 160/345 (46%), Gaps = 60/345 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++L A T + +NS++ +Y K EK+ S++ +M+ + + D +TY + A A
Sbjct: 232 MEKMKELNFAFTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPDVFTYNVWMRALAA 291
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G+++++ M+ D VA DW Y+ + + Y + G+ +KA A LK+ E++ +
Sbjct: 292 LKDIPGVERVIEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAALKELEKRNTSNDIE 351
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY ++TLYG+ +V R+W K+ ++ N Y N+I L L DL +AE F+E
Sbjct: 352 -AYQFLITLYGRTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANLKDLSAAEACFKE 410
Query: 180 WESQALC-------------------------------------------------YDTR 190
WE++ + YD R
Sbjct: 411 WEARHIHPPKTNTKGSGADNTPGADPKSPSNPPNNQSGTKETGDETAEDLQPKHPKYDIR 470
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-----YYLATGYRQNSQIHKAVE 245
+ N +I Y G+L+KA + K++G ++ K+W +YL TG + + A
Sbjct: 471 VANAMIKAYITEGMLDKAVAMKKRAKMRGGRLNAKTWEIFMEHYLKTGDLKMAHWC-ADR 529
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
AMKK + + W P + YF++ D+ GAE ++ L
Sbjct: 530 AMKK---GHSSGRIWVPPPAVTETLMSYFEENKDVDGAERYVGAL 571
>gi|293336604|ref|NP_001168600.1| uncharacterized protein LOC100382384 [Zea mays]
gi|223949449|gb|ACN28808.1| unknown [Zea mays]
Length = 536
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 160/345 (46%), Gaps = 60/345 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++L A T + +NS++ +Y K EK+ S++ +M+ + + D +TY + A A
Sbjct: 142 MEKMKELNFAFTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPDVFTYNVWMRALAA 201
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G+++++ M+ D VA DW Y+ + + Y + G+ +KA A LK+ E++ +
Sbjct: 202 LKDIPGVERVIEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAALKELEKRNTSNDIE 261
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY ++TLYG+ +V R+W K+ ++ N Y N+I L L DL +AE F+E
Sbjct: 262 -AYQFLITLYGRTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANLKDLSAAEACFKE 320
Query: 180 WESQALC-------------------------------------------------YDTR 190
WE++ + YD R
Sbjct: 321 WEARHIHPPKTNTKGSGADNTPGADPKSPSNPPNNQSGTKETGDETAEDLQPKHPKYDIR 380
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-----YYLATGYRQNSQIHKAVE 245
+ N +I Y G+L+KA + K++G ++ K+W +YL TG + + A
Sbjct: 381 VANAMIKAYITEGMLDKAVAMKKRAKMRGGRLNAKTWEIFMEHYLKTGDLKMAHWC-ADR 439
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
AMKK + + W P + YF++ D+ GAE ++ L
Sbjct: 440 AMKK---GHSSGRIWVPPPAVTETLMSYFEENKDVDGAERYVGAL 481
>gi|449515498|ref|XP_004164786.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27460-like [Cucumis sativus]
Length = 439
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 10/244 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M K+RD GL +YN M+KLY T EK+ ++ +M++N I + +Y ++A ++
Sbjct: 184 MVKLRDSGLVVNHHLYNEMMKLYVATYQNEKVPLVIKDMKQNLIPRNVLSYNLWMNACSE 243
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
I+ + M D NV + W T+ N Y + GL++KA A LK++E+++ K
Sbjct: 244 LYGVGSIELVFEEMLTDKNVQVGWSTMCTLANVYIQEGLVEKAFAALKEAEKKLSPCK-R 302
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-----YRNVISSLLKLDDLESAEK 175
Y ++TLY K+ V R+W +A K ++ Y ++ L+KL +++ AEK
Sbjct: 303 LGYFFLITLYASLKDKEGVFRVW----RASKAVSGNPTCANYICILLCLVKLGEIDKAEK 358
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+EWE YD R+ N L+ Y RNGLLEKAE+L H +G + K+W L G+
Sbjct: 359 VFKEWELNCRNYDIRVSNVLLGAYVRNGLLEKAESLHRHTLGRGGNPNYKTWEILMEGWV 418
Query: 236 QNSQ 239
++ Q
Sbjct: 419 RSQQ 422
>gi|298572066|gb|ADI88030.1| PPR protein [Silene latifolia]
Length = 224
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G LDKA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLDKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|449462348|ref|XP_004148903.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Cucumis sativus]
gi|449491586|ref|XP_004158945.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
mitochondrial-like [Cucumis sativus]
Length = 531
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 168/335 (50%), Gaps = 10/335 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM + G ++ + +N ML L+ EK+ +L+ +++N D TY L+
Sbjct: 172 MEKMSECGFLKSPLSFNHMLSLHISNKQLEKVPALIEGLKKN-TKPDVVTYNLLLNVCTL 230
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D E + I M+ + DWV ++T+ N Y K L +KA A LK+ E+ K N
Sbjct: 231 QNDTEAAENIFLEMK-KTKIQPDWVSFSTLANLYCKNQLTEKAAATLKEMEKM--AFKSN 287
Query: 121 SAYNVILTL-YGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFE 178
L Y G K++V RIW+ K + + +++ Y +ISSL+KL++LE AEK++
Sbjct: 288 RLSLSSLLSLYTNLGDKNEVYRIWKKLKSSFRKMSDREYMCMISSLVKLNELEEAEKLYT 347
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
EWES + DTR+ N ++ Y + +E+AE+ N KG +W L GY + +
Sbjct: 348 EWESVSGTRDTRVSNVMLGAYIKKNQIEQAESFYNRMLQKGTVPSYTTWELLTWGYLKEN 407
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
Q+ K + +K A + KW + +++G+I G E + +L + G + T
Sbjct: 408 QMEKVLHFFRK---AVNRVKKWNADERLVKGVCKKLEEQGNINGVEQLLLILRNAGHVDT 464
Query: 299 DLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
++ + LL + GK L + +++ N+ET
Sbjct: 465 EIYNSLLRTYAKAGKMPLIVAERMERDNVQLNDET 499
>gi|298572060|gb|ADI88027.1| PPR protein [Silene latifolia]
Length = 224
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGKLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK K+ N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572008|gb|ADI88001.1| PPR protein [Silene latifolia]
gi|298572012|gb|ADI88003.1| PPR protein [Silene latifolia]
gi|298572028|gb|ADI88011.1| PPR protein [Silene latifolia]
gi|298572052|gb|ADI88023.1| PPR protein [Silene latifolia]
Length = 224
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK K+ N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298571984|gb|ADI87989.1| PPR protein [Silene latifolia]
Length = 224
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEDLVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK K+ N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572004|gb|ADI87999.1| PPR protein [Silene latifolia]
gi|298572006|gb|ADI88000.1| PPR protein [Silene latifolia]
Length = 224
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK K+ N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298571988|gb|ADI87991.1| PPR protein [Silene latifolia]
Length = 224
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK K+ N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKK 136
P+ D +Y + N Y + DKA ++++ KG + YNV++TLY K +
Sbjct: 2 PDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRN--KGYCITPLPYNVMMTLYMKLDEL 59
Query: 137 DDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI-PNF 194
D V + E+ +K + + + Y +S+ ES E++F+E + D RI PN+
Sbjct: 60 DKVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQE-----MDLDPRIVPNW 114
Query: 195 -----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ---NSQIHKAVEA 246
+ +Y ++G LEKAE + + + + ++YL + Y ++++
Sbjct: 115 TTFSTMASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNI 174
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
K V + + W + + GDI GAE E
Sbjct: 175 YKSV---FPKIPNW-----GYHSVISSLVRSGDIEGAEKLYE 208
>gi|357110627|ref|XP_003557118.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g60770-like [Brachypodium distachyon]
Length = 536
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 161/347 (46%), Gaps = 63/347 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++L A T + YNS++ LY K EK+ S++ +M+ + + D YTY + + A
Sbjct: 142 MEKMKELNFAFTAMSYNSLMTLYTKVNQPEKVPSIIQDMKADDVLPDVYTYNVWMRSLAA 201
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G+++++ M+ D V DW Y+ + + Y + GL +KA A LK+ E++ +
Sbjct: 202 RQDISGVERVIEEMKRDGRVVPDWTTYSNLASIYVEAGLFEKAEAALKELEKRNTSNDLE 261
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY ++TLYG+ +V +W L + + N Y N+I L L DL +AE F+E
Sbjct: 262 -AYQFLITLYGRTQNLVEVHHVWRSLKRNNPRKANMSYLNMIQVLANLKDLPAAEACFKE 320
Query: 180 WESQALC--------------------------------------------------YDT 189
WE++ + YD
Sbjct: 321 WEARYIRPPKTKAIDAVTTETSKLDQESSTTNASNNDSDAKGTEDKGMEEIDMKHPKYDI 380
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-----YYLATGYRQNSQIHKAV 244
R+ N L+ Y G+L+KA L K++G ++ K+W +Y+ G +N+ H
Sbjct: 381 RVANALMKAYVTEGMLDKAVALKKRAKMRGGRLNSKTWEIFMEHYIKVGDLKNA--HWCT 438
Query: 245 E-AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ A+KK + + W P + + YF+ + D+ GAE F+E+L
Sbjct: 439 DRAIKK---GHSSGRIWVPPRDVTETLMGYFEKKKDVDGAEKFVEVL 482
>gi|297814019|ref|XP_002874893.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297320730|gb|EFH51152.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 525
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 156/307 (50%), Gaps = 9/307 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM + G ++ + YN ML ++ G FEK+ L+ E++ + D TY L+A+A
Sbjct: 178 FEKMGECGFLKSCLPYNHMLSMFISKGQFEKVSVLIKELKMK-TSPDIVTYNLWLTAFAS 236
Query: 61 ASDHEGIDKI-LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D EG +K+ L E+ N DWV Y+ + N Y K L+KA LK+ E+ + K
Sbjct: 237 GNDVEGAEKVYLKAKESKLNP--DWVTYSVLTNLYAKTDNLEKAKLALKEMEKLV-SKKN 293
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFE 178
AY +++L+ G KD V W+ + + K +N+ Y ++IS+++KL + E A+ +++
Sbjct: 294 RVAYASLISLHANLGDKDGVNLTWKKVRSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYD 353
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
EWES + D RIPN ++ Y + E KG +W L Y +
Sbjct: 354 EWESVSGTGDARIPNLILAEYMNRDEILLGEKFYERIVEKGINPSYSTWEILTWAYLKRK 413
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ K ++ +K A ++ KW +V + A +++G++ GAE + LL G + T
Sbjct: 414 DLEKVLDCFEK---AIDSVKKWTVNVRLVKAVCKELEEQGNVKGAEKLMTLLQKAGHVNT 470
Query: 299 DLQDKLL 305
L + LL
Sbjct: 471 QLYNSLL 477
>gi|298571978|gb|ADI87986.1| PPR protein [Silene latifolia]
gi|298571980|gb|ADI87987.1| PPR protein [Silene latifolia]
gi|298571982|gb|ADI87988.1| PPR protein [Silene latifolia]
gi|298571990|gb|ADI87992.1| PPR protein [Silene latifolia]
gi|298571994|gb|ADI87994.1| PPR protein [Silene latifolia]
gi|298571996|gb|ADI87995.1| PPR protein [Silene latifolia]
gi|298571998|gb|ADI87996.1| PPR protein [Silene latifolia]
gi|298572002|gb|ADI87998.1| PPR protein [Silene latifolia]
gi|298572020|gb|ADI88007.1| PPR protein [Silene latifolia]
gi|298572022|gb|ADI88008.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572014|gb|ADI88004.1| PPR protein [Silene latifolia]
gi|298572038|gb|ADI88016.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572040|gb|ADI88017.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFTNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572062|gb|ADI88028.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 HGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572024|gb|ADI88009.1| PPR protein [Silene latifolia]
gi|298572032|gb|ADI88013.1| PPR protein [Silene latifolia]
gi|298572044|gb|ADI88019.1| PPR protein [Silene latifolia]
gi|298572056|gb|ADI88025.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298571986|gb|ADI87990.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572058|gb|ADI88026.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|15235508|ref|NP_192191.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213327|sp|Q9SY07.1|PP302_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g02820, mitochondrial; Flags: Precursor
gi|4263527|gb|AAD15353.1| hypothetical protein [Arabidopsis thaliana]
gi|7269767|emb|CAB77767.1| hypothetical protein [Arabidopsis thaliana]
gi|332656833|gb|AEE82233.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 532
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 154/306 (50%), Gaps = 7/306 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM + G ++ + YN ML +Y G FEK+ L+ E++ + D TY L+A+A
Sbjct: 185 FEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLWLTAFAS 243
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D EG +K+ + + + DWV Y+ + N Y K ++KA LK+ E+ + K
Sbjct: 244 GNDVEGAEKVY-LKAKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLV-SKKNR 301
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
AY +++L+ G KD V W+ K + K +N+ Y ++IS+++KL + E A+ +++E
Sbjct: 302 VAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDE 361
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES + D RIPN ++ Y + E KG +W L Y +
Sbjct: 362 WESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKD 421
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ K ++ K A ++ KW +V + +++G++ GAE + LL G++ T
Sbjct: 422 MEKVLDCFGK---AIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQ 478
Query: 300 LQDKLL 305
L + LL
Sbjct: 479 LYNSLL 484
>gi|298572010|gb|ADI88002.1| PPR protein [Silene latifolia]
gi|298572034|gb|ADI88014.1| PPR protein [Silene latifolia]
gi|298572054|gb|ADI88024.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572042|gb|ADI88018.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKLGELEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFTNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572016|gb|ADI88005.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 26/222 (11%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKK 136
P+ D +Y + N YG + DKA ++++ KG + YNV++TLY K +
Sbjct: 2 PDTLKDMRLYGALLNAYGGAKIRDKAETLMEQMRN--KGYCITPLPYNVMMTLYMKLDEL 59
Query: 137 DDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI-PNF 194
D V + E+ +K + + + Y +S+ ES E++F+E + D RI PN+
Sbjct: 60 DKVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQE-----MDLDPRIVPNW 114
Query: 195 -----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ---NSQIHKAVEA 246
+ +Y ++G LEKAE + + + + ++YL + Y ++++
Sbjct: 115 TTFSTMASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNI 174
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
K V + + W + + GDI GAE E
Sbjct: 175 YKSV---FPNIPNW-----GYHSVISSLVRSGDIEGAEKLYE 208
>gi|298571976|gb|ADI87985.1| PPR protein [Silene latifolia]
gi|298571992|gb|ADI87993.1| PPR protein [Silene latifolia]
gi|298572000|gb|ADI87997.1| PPR protein [Silene latifolia]
gi|298572064|gb|ADI88029.1| PPR protein [Silene latifolia]
Length = 224
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKK 136
P+ D +Y + N Y + DKA ++++ KG + YNV++TLY K +
Sbjct: 2 PDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRN--KGYCITPLPYNVMMTLYMKLDEL 59
Query: 137 DDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI-PNF 194
D V + E+ +K + + + Y +S+ ES E++F+E + D RI PN+
Sbjct: 60 DKVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQE-----MDLDPRIVPNW 114
Query: 195 -----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ---NSQIHKAVEA 246
+ +Y ++G LEKAE + + + + ++YL + Y ++++
Sbjct: 115 TTFSTMASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNI 174
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
K V + + W + + GDI GAE E
Sbjct: 175 YKSV---FPNIPNW-----GYHSVISSLVRSGDIEGAEKLYE 208
>gi|298572026|gb|ADI88010.1| PPR protein [Silene latifolia]
gi|298572046|gb|ADI88020.1| PPR protein [Silene latifolia]
Length = 224
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKLGELEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572030|gb|ADI88012.1| PPR protein [Silene latifolia]
Length = 224
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K ++++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDEVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGELEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK K+ N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPKIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572960|gb|ADI88477.1| PPR protein [Silene vulgaris]
Length = 224
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKIQLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP +A +W ++T+ Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIAPNWTTFSTMAAMYSKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +++LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLISLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|298572018|gb|ADI88006.1| PPR protein [Silene latifolia]
Length = 224
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K G L+KA L+ E +I +
Sbjct: 91 HGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKK 136
P+ D +Y + N Y + DKA ++++ KG + YNV++TLY K +
Sbjct: 2 PDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRN--KGYCITPLPYNVMMTLYMKLDEL 59
Query: 137 DDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI-PNF 194
D V + E+ +K + + + Y +S+ ES E++F+E + D RI PN+
Sbjct: 60 DKVEELVSEMKQKKISLDSYSYNIWLSARGSHGSPESMEQVFQE-----MDLDPRIVPNW 114
Query: 195 -----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ---NSQIHKAVEA 246
+ +Y ++G LEKAE + + + + ++YL + Y ++++
Sbjct: 115 TTFSTMASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNI 174
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
K V + + W + + GDI GAE E
Sbjct: 175 YKSV---FPNIPNW-----GYHSVISSLVRSGDIEGAEKLYE 208
>gi|17064738|gb|AAL32523.1| Unknown protein [Arabidopsis thaliana]
gi|27311917|gb|AAO00924.1| Unknown protein [Arabidopsis thaliana]
Length = 532
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 154/306 (50%), Gaps = 7/306 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM + G ++ + YN ML +Y G FEK+ L+ E++ + D TY L+A+A
Sbjct: 185 FEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLWLTAFAS 243
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D EG +K+ + + + DWV Y+ + N Y K ++KA L++ E+ + K
Sbjct: 244 GNDVEGAEKVY-LKAKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALREMEKLV-SKKNR 301
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
AY +++L+ G KD V W+ K + K +N+ Y ++IS+++KL + E A+ +++E
Sbjct: 302 VAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDE 361
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES + D RIPN ++ Y + E KG +W L Y +
Sbjct: 362 WESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKD 421
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ K ++ K A ++ KW +V + +++G++ GAE + LL G++ T
Sbjct: 422 MEKVLDCFGK---AIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQ 478
Query: 300 LQDKLL 305
L + LL
Sbjct: 479 LYNSLL 484
>gi|298572036|gb|ADI88015.1| PPR protein [Silene latifolia]
Length = 224
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K +K++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYAKSGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKK 136
P+ D +Y + N Y + DKA ++++ KG + YNV++TLY K +
Sbjct: 2 PDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRN--KGYCITPLPYNVMMTLYMKLDEL 59
Query: 137 DDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI-PNF 194
D V + E+ +K + + + Y +S+ ES E++F+E + D RI PN+
Sbjct: 60 DKVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQE-----MDLDPRIIPNW 114
Query: 195 -----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ---NSQIHKAVEA 246
+ +Y ++G LEKAE + + + + ++YL + Y ++++
Sbjct: 115 TTFSTMASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNI 174
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
K V + + W + + GDI GAE E
Sbjct: 175 YKSV---FPNIPNW-----GYHSVISSLVRSGDIEGAEKLYE 208
>gi|297809953|ref|XP_002872860.1| hypothetical protein ARALYDRAFT_490379 [Arabidopsis lyrata subsp.
lyrata]
gi|297318697|gb|EFH49119.1| hypothetical protein ARALYDRAFT_490379 [Arabidopsis lyrata subsp.
lyrata]
Length = 500
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 147/293 (50%), Gaps = 6/293 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M DL ++ +N+++ +Y + G EK+ +L+ M++ IT TY + +
Sbjct: 161 FENMVDLNHVSNSLPFNNLMAMYLRIGQSEKVPALVVAMKQKNITPCDITYSMWIQSCGS 220
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +G++K+L M+A+ W +A + Y KVGL DKA LK E ++ +
Sbjct: 221 LKDLDGVEKVLDEMKAEGEGISSWDTFANLAAIYIKVGLYDKAEEALKSLENKM-NPHIR 279
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ +++LY +V R+W+L KK +NN Y ++ +L KL+D++ +KIF E
Sbjct: 280 DCYHFLISLYAGIANASEVYRVWDLLKKRHPNVNNSSYLTMLQALSKLNDIDGIKKIFTE 339
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N I Y + + E+AE + N K + K+ L +N Q
Sbjct: 340 WESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMTKCKGQFSKARQLLMMHLLKNDQ 399
Query: 240 IHKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
A A+K AA L K W S E +++ +F++ D+ GAE F + L
Sbjct: 400 ---ADLALKHFEAAVLDLDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLT 449
>gi|298572050|gb|ADI88022.1| PPR protein [Silene latifolia]
Length = 224
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 112/195 (57%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K ++++ L+ EM++ I+ D Y+Y LSA
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDEVEELVSEMKQKKISLDSYSYNIWLSARGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|359480173|ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02370, mitochondrial-like [Vitis vinifera]
Length = 506
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 172/346 (49%), Gaps = 15/346 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM +L A T++ +N+++ L+ + G E + L+ EM++ I+ D +TY + +YA
Sbjct: 167 FEKMDELNFASTSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYAR 226
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D EG +++L ++ + L W Y+ + Y L +KA LKK EE++ G
Sbjct: 227 LNDIEGAERVLEEIKRENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEM-GFHDR 285
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
AY+ +++LY +V R+W K A NN Y ++ +L L+D++ + FEE
Sbjct: 286 LAYHFLISLYAGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEE 345
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W+S +D R+ N + + +++ AE+++ +E +K +Y A
Sbjct: 346 WKSSCFSFDVRLANVAVRAFLGWDMIKDAESIL-YEAVK----RSSGPFYTALDMFMAHH 400
Query: 240 IH-KAVEAMKKVLAAYQTLVK---WKPSVESLAACLDYFKDEGDIGGAENFIELL-NDKG 294
+ + ++ K + A + VK W+P+ E + A L YF++E D+ GAE F ++L N G
Sbjct: 401 LKVREIDTALKYMEAAASEVKNNEWQPAPERVLAFLKYFEEEKDVEGAEKFCKILKNISG 460
Query: 295 FIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL---SGPE 337
Q L V G++ E + + + + + + L GPE
Sbjct: 461 LDSNAYQLLLQTXVAAGRTEPEMRKRMKEDDIEVDSKDLLQRVGPE 506
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
+S +K K F+ +M ME I + Y RL + ++ +
Sbjct: 80 SSCIKQLRKYRQFQHALEIMDWMENRKIFFSYADYAVRLDLLSKTKGLATAEEYFNNLSP 139
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK 136
A + + Y T+ N Y K + +KALA+ +K +E + A + +N +++L+ + GK
Sbjct: 140 S---AKNLLTYGTLLNCYCKEKMEEKALALFEKMDE-LNFASTSLTFNNLMSLHMRLGKP 195
Query: 137 DDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ---ALCYDTRIP 192
+ V + E+ K+++ Y ++ S +L+D+E AE++ EE + + L + T
Sbjct: 196 EMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENEDKLSWTTY-- 253
Query: 193 NFLIDVYCRNGLLEKAE 209
+ L VY L EKAE
Sbjct: 254 SNLAAVYVNARLFEKAE 270
>gi|297743994|emb|CBI36964.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 154/297 (51%), Gaps = 11/297 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM +L A T++ +N+++ L+ + G E + L+ EM++ I+ D +TY + +YA
Sbjct: 206 FEKMDELNFASTSLTFNNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYAR 265
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D EG +++L ++ + L W Y+ + Y L +KA LKK EE++ G
Sbjct: 266 LNDIEGAERVLEEIKRENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEM-GFHDR 324
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
AY+ +++LY +V R+W K A NN Y ++ +L L+D++ + FEE
Sbjct: 325 LAYHFLISLYAGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEE 384
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W+S +D R+ N + + +++ AE+++ +E +K +Y A
Sbjct: 385 WKSSCFSFDVRLANVAVRAFLGWDMIKDAESIL-YEAVK----RSSGPFYTALDMFMAHH 439
Query: 240 IH-KAVEAMKKVLAAYQTLVK---WKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+ + ++ K + A + VK W+P+ E + A L YF++E D+ GAE F ++L +
Sbjct: 440 LKVREIDTALKYMEAAASEVKNNEWQPAPERVLAFLKYFEEEKDVEGAEKFCKILKN 496
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
+S +K K F+ +M ME I + Y RL + ++ +
Sbjct: 119 SSCIKQLRKYRQFQHALEIMDWMENRKIFFSYADYAVRLDLLSKTKGLATAEEYFNNLSP 178
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK 136
A + + Y T+ N Y K + +KALA+ +K +E + A + +N +++L+ + GK
Sbjct: 179 S---AKNLLTYGTLLNCYCKEKMEEKALALFEKMDE-LNFASTSLTFNNLMSLHMRLGKP 234
Query: 137 DDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ---ALCYDTRIP 192
+ V + E+ K+++ Y ++ S +L+D+E AE++ EE + + L + T
Sbjct: 235 EMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENEDKLSWTTY-- 292
Query: 193 NFLIDVYCRNGLLEKAE 209
+ L VY L EKAE
Sbjct: 293 SNLAAVYVNARLFEKAE 309
>gi|298572048|gb|ADI88021.1| PPR protein [Silene latifolia]
Length = 224
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ G T + YN M+ LY K ++++ L+ EM++ I+ D Y+Y LS
Sbjct: 31 MEQMRNKGYCITPLPYNVMMTLYMKLDELDEVEELVSEMKQKKISLDSYSYNIWLSTRGS 90
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++++ M+ DP + +W ++T+ + Y K+G L+KA L+ E +I +
Sbjct: 91 QGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITN-RDR 149
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G + +V R+W +YK + N GY +VISSL++ D+E AEK++EE
Sbjct: 150 MPYHYLLSLYGSLGNRGEVYRVWNIYKSVFPNIPNWGYHSVISSLVRSGDIEGAEKLYEE 209
Query: 180 WESQALCYDTRIPNF 194
W +D +I N
Sbjct: 210 WLPVKSSFDPKIGNL 224
>gi|297843032|ref|XP_002889397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335239|gb|EFH65656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 524
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 158/303 (52%), Gaps = 5/303 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM +L ++ +N+M+ +Y + EK+ L+ M++ GI+ TY + +
Sbjct: 182 FEKMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGS 241
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D +G++KI+ M D W ++ + + K GL +KA + LK E+++ +
Sbjct: 242 LNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIFTKAGLYEKAESALKSMEKKMNPNNRD 301
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
S ++ +++LY K +V R+WE KKA +NN Y ++ ++ KL D++ +KIF E
Sbjct: 302 S-HHFLISLYAGISKGTEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDIDGIKKIFTE 360
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES+ YD R+ N I+ Y + + E+AE +++ K + K+ L +N +
Sbjct: 361 WESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMEKSKGPFSKARQLLMIHLLENGK 420
Query: 240 IHKAVEAMKKVLA-AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
A++ ++ ++ + +W S E ++ +FK D+ GAE+F ++L++ + P
Sbjct: 421 ADLAMKHLETAVSDPAENKDEWSWSSELVSLFFLHFKRAKDVDGAEDFCKILSN--WKPV 478
Query: 299 DLQ 301
D +
Sbjct: 479 DCE 481
>gi|15217734|ref|NP_171739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173342|sp|Q9FZ24.1|PPR4_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g02370, mitochondrial; Flags: Precursor
gi|9857533|gb|AAG00888.1|AC064879_6 Hypothetical protein [Arabidopsis thaliana]
gi|332189300|gb|AEE27421.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 151/294 (51%), Gaps = 9/294 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +L ++ +N+M+ +Y + EK+ L+ M++ GI+ TY + + +D
Sbjct: 198 MDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLND 257
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+G++KI+ M D W ++ + Y K GL +KA + LK EE++ +S +
Sbjct: 258 LDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDS-H 316
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWES 182
+ +++LY K +V R+WE KKA +NN Y ++ ++ KL DL+ +KIF EWES
Sbjct: 317 HFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWES 376
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ YD R+ N I+ Y + + E+AE +++ K + K+ L +N K
Sbjct: 377 KCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLEND---K 433
Query: 243 AVEAMKKVLAAYQTLV----KWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
A AMK + AA +W S E ++ +F+ D+ GAE+F ++L++
Sbjct: 434 ADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSN 487
>gi|255647669|gb|ACU24296.1| unknown [Glycine max]
Length = 484
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 147/292 (50%), Gaps = 3/292 (1%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +LG T + +N+++ L+ K G +K+ L+ M++ I +TY +++ A ++D
Sbjct: 154 MDELGYV-TNLAFNNVMTLFMKLGEPQKVPQLVELMKKRTIPMSPFTYHIWMNSCASSND 212
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
G +++ M+ + + W Y+ + + Y K +KA MLK EEQ+K K AY
Sbjct: 213 LGGAERVYEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEMMLKMLEEQVK-PKQRDAY 271
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+ +L LY G +V R+W+ K V N Y ++S+L +L+D+E K F+EWE+
Sbjct: 272 HCLLGLYAGTGNLGEVHRVWDSLKSVSPVTNFSYLVMLSTLRRLNDMEGLTKCFKEWEAS 331
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ YD R+ + + + +LE+AE + + + + + + ++ A
Sbjct: 332 CVSYDARLVSVCVSAHLNQNMLEEAELVFEEASRRSKGPFFRVREEFMKFFLKKHELDAA 391
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
V ++ L+ + KW+PS + + A Y+++E D+ G + F ++ F
Sbjct: 392 VRHLEAALSEVKG-DKWRPSPQVVGAFFKYYEEETDVDGVDEFSKIFKANNF 442
>gi|356536682|ref|XP_003536865.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02370, mitochondrial-like [Glycine max]
Length = 593
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 148/292 (50%), Gaps = 3/292 (1%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +LG T + +N+++ L+ K G +K+ L+ M++ I +TY +++ A ++D
Sbjct: 154 MDELGYV-TNLAFNNVMTLFMKLGEPQKVPQLVELMKKRTIPMSPFTYHIWMNSCASSND 212
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
G +++ M+ + + W Y+ + + Y K +KA MLK EEQ+K K AY
Sbjct: 213 LGGAERVYEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEMMLKMLEEQVK-PKQRDAY 271
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+ +L LY G +V R+W+ K V N Y ++S+L +L+D+E K F+EWE+
Sbjct: 272 HCLLGLYAGTGNLGEVHRVWDSLKSVSPVTNFSYLVMLSTLRRLNDMEGLTKCFKEWEAS 331
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ YD R+ + + + +LE+AE + + + + + + ++ A
Sbjct: 332 CVSYDARLVSVCVSAHLNQNMLEEAELVFEEASRRSKGPFFRVREEFMKFFLKKHELDAA 391
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
V ++ L+ + KW+PS + + A L Y+++E D+ G + ++L F
Sbjct: 392 VRHLEAALSEVKG-DKWRPSPQVVGAFLKYYEEETDVDGVDELSKILKANNF 442
>gi|242091818|ref|XP_002436399.1| hypothetical protein SORBIDRAFT_10g001830 [Sorghum bicolor]
gi|241914622|gb|EER87766.1| hypothetical protein SORBIDRAFT_10g001830 [Sorghum bicolor]
Length = 536
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 155/345 (44%), Gaps = 60/345 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M KM +L A T + +NS++ +Y K EK+ ++ M+ + + +TY + A A
Sbjct: 142 MAKMSELNFAFTAMPFNSLMTMYTKVNQPEKVPGIIQYMKADDVLPHVFTYNVWMRALAA 201
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G+++++ M+ D VA DW Y+ + + Y GL +KA A LK+ E++ V
Sbjct: 202 LNDIPGVERVIEEMKRDGRVAPDWTTYSNLASIYVDAGLFEKAEAALKELEKRNTSNDV- 260
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY ++TLYG+ +V R+W L + ++ N Y N+I L L DL +AE F+E
Sbjct: 261 EAYQFLITLYGRTQNLVEVHRVWRSLKRNNPRMANMSYLNMIQVLANLKDLPAAEACFKE 320
Query: 180 WESQALC-------------------------------------------------YDTR 190
WE++ + YD R
Sbjct: 321 WEARHIHPPKTKAKDSGADNISTTDPESSSNLPNNQSGIKETGDEAAKDLQLKHPKYDIR 380
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-----YYLATGYRQNSQIHKAVE 245
+ N +I Y G+L+KA + K+ G ++ K+W ++L TG + + A
Sbjct: 381 VANAMIKAYIAEGMLDKAVAVKKRAKMHGGRLNAKTWEIFMEHHLKTGDLKMAHWC-ADR 439
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
AMKK + + W P + YF++ D+ GAE ++E L
Sbjct: 440 AMKK---GHSSGRIWVPPPAVTETLMSYFEENKDVDGAEQYVESL 481
>gi|449458295|ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial-like [Cucumis sativus]
gi|449518825|ref|XP_004166436.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial-like [Cucumis sativus]
Length = 474
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 151/292 (51%), Gaps = 4/292 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM +L ++ T++ +N+++ +Y + + EK+ L+ EM++ G +TY +++ A
Sbjct: 132 FKKMDELKIS-TSLSFNNLMTMYMRMDHPEKVPPLIGEMKQRGFYLTTFTYNVWMNSCAS 190
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D +++IL M+ + DW Y+ + + Y K G +KA LKK EE++K K +
Sbjct: 191 LNDIGKVEEILEEMKMEDRNKFDWTTYSNLASFYVKAGQFEKAELALKKLEEEMKSDKND 250
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFE 178
Y+ +++LY +V RIW K + N Y ++ +L KL D+E ++ ++
Sbjct: 251 RLVYHCLISLYASTSNLSEVNRIWNALKSVYSTMTNISYLVMLQALRKLKDIEGLKRTYK 310
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
EWES +D RI N +I Y + + E A + + + ++ + +
Sbjct: 311 EWESNCRNFDLRIVNDIIGAYLQQDMYEDAAMIFEDATKRSKGPFSRAREMFMVYFLKLK 370
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
Q+ A ++ L+ + +W PS+ + A L+YF++E D+ GAE+F +L
Sbjct: 371 QVDSAFSHLESALSESKE-KEWHPSLATTTAFLNYFEEEKDVEGAEDFARIL 421
>gi|17529324|gb|AAL38889.1| unknown protein [Arabidopsis thaliana]
Length = 537
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 151/294 (51%), Gaps = 9/294 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +L ++ +N+M+ +Y + EK+ L+ +++ GI+ TY + + +D
Sbjct: 198 MDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAIKQRGISPCGVTYSIWMQSCGSLND 257
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+G++KI+ M D W ++ + Y K GL +KA + LK EE++ +S +
Sbjct: 258 LDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDS-H 316
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWES 182
+ +++LY K +V R+WE KKA +NN Y ++ ++ KL DL+ +KIF EWES
Sbjct: 317 HFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWES 376
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ YD R+ N I+ Y + + E+AE +++ K + K+ L +N K
Sbjct: 377 KCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLEND---K 433
Query: 243 AVEAMKKVLAAYQTLV----KWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
A AMK + AA +W S E ++ +F+ D+ GAE+F ++L++
Sbjct: 434 ADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSN 487
>gi|4558568|gb|AAD22661.1|AC007138_25 hypothetical protein [Arabidopsis thaliana]
gi|7268583|emb|CAB80692.1| hypothetical protein [Arabidopsis thaliana]
Length = 501
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 6/293 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M DL ++ +N+++ +Y G EK+ +L+ M+E IT TY + +
Sbjct: 162 FENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGS 221
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +G++K+L M+A+ W +A + Y KVGL KA LK E + V
Sbjct: 222 LKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNM-NPDVR 280
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ ++ LY +V R+W+L KK +NN Y ++ +L KLDD++ +K+F E
Sbjct: 281 DCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAE 340
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N I Y + + E+AE + N K + K+ L +N Q
Sbjct: 341 WESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQ 400
Query: 240 IHKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
A A+K AA K W S E +++ +F++ D+ GAE F + L
Sbjct: 401 ---ADLALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLT 450
>gi|18411800|ref|NP_567220.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75163252|sp|Q93WC5.1|PP300_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01990, mitochondrial; Flags: Precursor
gi|14517494|gb|AAK62637.1| AT4g01990/T7B11_26 [Arabidopsis thaliana]
gi|16323354|gb|AAL15390.1| AT4g01990/T7B11_26 [Arabidopsis thaliana]
gi|332656708|gb|AEE82108.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 502
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 6/293 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M DL ++ +N+++ +Y G EK+ +L+ M+E IT TY + +
Sbjct: 163 FENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGS 222
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +G++K+L M+A+ W +A + Y KVGL KA LK E + V
Sbjct: 223 LKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNM-NPDVR 281
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ ++ LY +V R+W+L KK +NN Y ++ +L KLDD++ +K+F E
Sbjct: 282 DCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAE 341
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N I Y + + E+AE + N K + K+ L +N Q
Sbjct: 342 WESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQ 401
Query: 240 IHKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
A A+K AA K W S E +++ +F++ D+ GAE F + L
Sbjct: 402 ---ADLALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLT 451
>gi|242057165|ref|XP_002457728.1| hypothetical protein SORBIDRAFT_03g012450 [Sorghum bicolor]
gi|241929703|gb|EES02848.1| hypothetical protein SORBIDRAFT_03g012450 [Sorghum bicolor]
Length = 530
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 10/308 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M +LG T+ N+++ LY K K+DSL EM+ I D T C +++YA +
Sbjct: 190 RQMDELGFWSGTLPINNLMSLYMKLDQHRKVDSLFEEMKVKNIKPDSLTCCILMTSYAAS 249
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + I+++L M + +V+L W Y+T+ + Y G ++KA + LKK E I
Sbjct: 250 NKIDAIEELLKEM-VEKDVSLGWSAYSTLASIYVNAGQVEKAESALKKLEGLIGAEDGRQ 308
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ +++LY G ++ R+W++ K K V N Y ++ +L KL+D++ ++I+ EW
Sbjct: 309 PFDFLMSLYASLGNLSEINRVWDVIKAKFSTVTNISYLGMLHALYKLNDIDRMKQIYMEW 368
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES YD R+ N +I + R G+ E+AE L K KG E K+ Y +
Sbjct: 369 ESNYQTYDVRLTNMMIRGHLRLGMSEEAETLREKAKEKGVEFDSKTCELFLDHYMGKGDM 428
Query: 241 HKA---VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ A VE M K+ L + + + YF++ D AE F L G I
Sbjct: 429 NSALNWVENMTKLPKKAGKLDQ-----DRIYKFQKYFEEHKDADSAERFCNCLRMLGCID 483
Query: 298 TDLQDKLL 305
+ LL
Sbjct: 484 GKAYESLL 491
>gi|223974825|gb|ACN31600.1| unknown [Zea mays]
Length = 515
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 146/310 (47%), Gaps = 14/310 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M +LG+ +T+ N+++ LY K + K+ SL EM+ + + T C +++YA
Sbjct: 174 RQMDELGIWSSTLPINNLMSLYMKLDQYRKVVSLFEEMKLKNVKPNSLTCCILMTSYAAL 233
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + I+++L M + +V L W Y+T+ + Y G KA + LKK E I
Sbjct: 234 NKIDDIEELLKEM-VEKDVTLGWSAYSTLASIYVNAGQFGKAESALKKLEGLISAHDDRQ 292
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ +L+LY G +V R+W + K K KV N Y ++ +L KL+D++ ++I+ EW
Sbjct: 293 PFDFLLSLYASLGNLSEVNRVWNVIKSKFSKVTNTSYLGMLHALYKLNDIDRMKQIYMEW 352
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES +D ++ N +I + + G+ E+AE LV K G E K+ Y
Sbjct: 353 ESNYETFDVKLTNMMIRSHLKVGMTEEAEMLVEKVKENGAEFDTKTCELFLDHYM----- 407
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAA-----CLDYFKDEGDIGGAENFIELLNDKGF 295
E M L + + K E L YF++ D GAE F L G
Sbjct: 408 --GTEDMNSALNWLENMTKLSKKAEKLDQDRIYKFQKYFEEHKDADGAERFCNCLRTLGC 465
Query: 296 IPTDLQDKLL 305
I + LL
Sbjct: 466 IDGKAYESLL 475
>gi|357442213|ref|XP_003591384.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480432|gb|AES61635.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 148/294 (50%), Gaps = 5/294 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + G T++ + +++ +Y + K+ L++ M+E I +TY +++ A +
Sbjct: 215 KMDEFGYL-TSLSFTNLMSMYMRLSQPSKVPQLVNVMKERKIRMTEFTYILWMNSCAALN 273
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D ++++ M+ + +DW Y+ + Y K G +KA MLKK E +K +
Sbjct: 274 DLGEVERVYEEMKREDEDKIDWKTYSNLAAIYIKAGFFEKAELMLKKVEGVMK-PRQRET 332
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
Y+ +L+LY G +V R+W KK V N Y ++S+L +L+D+E K+F+EWES
Sbjct: 333 YHFLLSLYAGTGNVKEVYRVWGTLKKITPVTNRSYLIMLSNLRRLNDMEGIIKLFKEWES 392
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG-REIHVKSWYYLATGYRQNSQIH 241
+ + YD+R+ + Y ++K LV E LK R + + Q+
Sbjct: 393 RHVSYDSRLVGVAVQAYLSQN-MDKEAVLVFEEALKSCRGPFFRIREMFMASLLEKGQLD 451
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
A+ ++ L+ + K++PS + ++A L Y+++E D+ G + ++L F
Sbjct: 452 GAMSHLEAALSE-ASDYKYQPSPQVVSAFLKYYEEETDLDGVDELSKILRSHNF 504
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 29 FEKLDSLMHEMEENGITYDRYTYCTRLSAYAD-ASDHEGIDKILTMMEADPNVALDWVIY 87
FE ++ +M M + ++D Y + Y D S +G+ + + P A + Y
Sbjct: 142 FEIMEWMM--MRQINFSWDNY------AVYLDLVSKVKGVVEAENHFNSFPPPAKNKYTY 193
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYK 147
++ N Y K +LDKAL+ K +E G + ++ ++++Y + + V ++ + K
Sbjct: 194 GSLLNCYCKELMLDKALSHFDKMDEF--GYLTSLSFTNLMSMYMRLSQPSKVPQLVNVMK 251
Query: 148 -KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ-ALCYDTRIPNFLIDVYCRNGLL 205
+ +++ Y ++S L+DL E+++EE + + D + + L +Y + G
Sbjct: 252 ERKIRMTEFTYILWMNSCAALNDLGEVERVYEEMKREDEDKIDWKTYSNLAAIYIKAGFF 311
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
EKAE ++ + + +++++L + Y + K+V + TL K P
Sbjct: 312 EKAELMLKKVEGVMKPRQRETYHFLLSLYAGTGNV-------KEVYRVWGTLKKITP 361
>gi|297829684|ref|XP_002882724.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328564|gb|EFH58983.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 518
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 108/213 (50%), Gaps = 33/213 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KMR LG+ YNSM+ LY N K+D ++ EM+EN + D T L YA
Sbjct: 169 FEKMRKLGMLLRPSPYNSMVSLYSSLRNRNKVDEILREMKENNLELDSPTVNNALRVYAA 228
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +DK L DW T+ E + ++
Sbjct: 229 VCDVATMDKFLA----------DWNAITTL---------------------EWLTTLEMA 257
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI-FEE 179
AY +I LYG+ G+++DV RIW+LYK + N G+R +I SLLKLDD+ AEKI ++E
Sbjct: 258 KAYRLI-RLYGEAGEREDVYRIWDLYKNTKEKDNEGFRALIGSLLKLDDINGAEKIYYDE 316
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
WES L +D RIP L+ Y G+++KA+ L+
Sbjct: 317 WESSGLEFDLRIPTMLMSGYRAKGMVKKADKLL 349
>gi|388512893|gb|AFK44508.1| unknown [Medicago truncatula]
Length = 244
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 107/198 (54%), Gaps = 3/198 (1%)
Query: 99 LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GY 157
L +KA LKK+E +I G + ++ +L+LYG G KD+V R+W YK + N GY
Sbjct: 3 LFEKAQECLKKAEGRILG-RDKVPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLGY 61
Query: 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
+ISSL+++DD+E AEK++EEW S D+RI N LI Y + G +K + H
Sbjct: 62 HAIISSLVRMDDIEGAEKLYEEWVSVRPSDDSRIGNLLISWYLKKGKSDKVFSFFKHMSE 121
Query: 218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE 277
G + +W L+ G+ ++ +A+ ++K + WKP LAA L +DE
Sbjct: 122 GGGCPNSTTWELLSEGHIAEKRVSEALSCLEKAFMTSDS-KSWKPKPIKLAAFLKLCQDE 180
Query: 278 GDIGGAENFIELLNDKGF 295
D+ A+ IELL G+
Sbjct: 181 DDMESAKVLIELLRKPGY 198
>gi|22165078|gb|AAM93695.1| putative leaf protein [Oryza sativa Japonica Group]
Length = 372
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 149/323 (46%), Gaps = 43/323 (13%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y S+LK Y + EK + L +M G+ Y Y + Y E + + M
Sbjct: 79 CYGSLLKCYAEANCVEKAEELFEKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAM 137
Query: 75 EAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
E P+V+ + +A+L+K + TL
Sbjct: 138 EESGIVPDVSTTHTL-----------------VAVLRKKK----------------TLVA 164
Query: 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
Y +D+ I + +KA N+ Y I LLK++D+ AEK +EEWES+ + +D+R+
Sbjct: 165 AYVVAEDIKAIENVLEKA-NSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRL 223
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
N L+D YC+ GL++KAE LV+ KGR + Y LA GY + Q+ KA + KK L
Sbjct: 224 INLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVSKAADLTKKAL 283
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT-DLQDKLLDN-VQ 309
A+ +W P + ++ L+YF ++ ++ AE + LL + PT D+ LL V
Sbjct: 284 ASASN--EWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQ-RLVTPTRDIYHGLLKTYVN 340
Query: 310 NGKSNLETLRELYGNSLAGNEET 332
GK + L + + + +EET
Sbjct: 341 AGKPVSDLLHRMKKDGMEADEET 363
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 54/249 (21%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC--------- 52
+KMR +G+A ++ YN M++LY + G E++ S+ MEE+GI D T
Sbjct: 101 EKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPDVSTTHTLVAVLRKK 159
Query: 53 -TRLSAYADASDHEGIDKILT---------------------MMEAD--------PNVAL 82
T ++AY A D + I+ +L M+ A+ +V
Sbjct: 160 KTLVAAYVVAEDIKAIENVLEKANSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYH 219
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI 142
D + + + Y K GL+DKA A++ ++ IK ++ A N L G Y K V +
Sbjct: 220 DSRLINLLVDAYCKEGLMDKAEALV---DQFIKKGRMPFA-NTCYKLAGGYFKVGQVSKA 275
Query: 143 WELYKKAVKVLNNGY----RNVISSL---LKLDDLESAEKIFEEWESQALCYDTR-IPNF 194
+L KKA+ +N + NV+ SL + ++E+AE++ Q L TR I +
Sbjct: 276 ADLTKKALASASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLL--QRLVTPTRDIYHG 333
Query: 195 LIDVYCRNG 203
L+ Y G
Sbjct: 334 LLKTYVNAG 342
>gi|115482780|ref|NP_001064983.1| Os10g0501000 [Oryza sativa Japonica Group]
gi|113639592|dbj|BAF26897.1| Os10g0501000, partial [Oryza sativa Japonica Group]
Length = 451
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 146/319 (45%), Gaps = 37/319 (11%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y S+LK Y + EK + L +M G+ Y Y + Y E + + ME
Sbjct: 159 YGSLLKCYAEANCVEKAEELFEKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAME 217
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
I V + V +L K KK TL Y
Sbjct: 218 ESG-------IVPDVSTTHTLVAVLRK-----KK------------------TLVAAYVV 247
Query: 136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195
+D+ I + +KA N+ Y I LLK++D+ AEK +EEWES+ + +D+R+ N L
Sbjct: 248 AEDIKAIENVLEKA-NSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRLINLL 306
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ 255
+D YC+ GL++KAE LV+ KGR + Y LA GY + Q+ KA + KK LA+
Sbjct: 307 VDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVSKAADLTKKALASAS 366
Query: 256 TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT-DLQDKLLDN-VQNGKS 313
+W P + ++ L+YF ++ ++ AE + LL + PT D+ LL V GK
Sbjct: 367 N--EWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQ-RLVTPTRDIYHGLLKTYVNAGKP 423
Query: 314 NLETLRELYGNSLAGNEET 332
+ L + + + +EET
Sbjct: 424 VSDLLHRMKKDGMEADEET 442
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 51/222 (22%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC--------- 52
+KMR +G+A ++ YN M++LY + G E++ S+ MEE+GI D T
Sbjct: 180 EKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPDVSTTHTLVAVLRKK 238
Query: 53 -TRLSAYADASDHEGIDKILT---------------------MMEAD--------PNVAL 82
T ++AY A D + I+ +L M+ A+ +V
Sbjct: 239 KTLVAAYVVAEDIKAIENVLEKANSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYH 298
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI 142
D + + + Y K GL+DKA A++ ++ IK ++ A N L G Y K V +
Sbjct: 299 DSRLINLLVDAYCKEGLMDKAEALV---DQFIKKGRMPFA-NTCYKLAGGYFKVGQVSKA 354
Query: 143 WELYKKAVKVLNNGY----RNVISSL---LKLDDLESAEKIF 177
+L KKA+ +N + NV+ SL + ++E+AE++
Sbjct: 355 ADLTKKALASASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMM 396
>gi|125575301|gb|EAZ16585.1| hypothetical protein OsJ_32057 [Oryza sativa Japonica Group]
Length = 400
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 149/323 (46%), Gaps = 43/323 (13%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y S+LK Y + EK + L +M G+ Y Y + Y E + + M
Sbjct: 107 CYGSLLKCYAEANCVEKAEELFEKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAM 165
Query: 75 EAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
E P+V+ + +A+L+K + TL
Sbjct: 166 EESGIVPDVSTTHTL-----------------VAVLRKKK----------------TLVA 192
Query: 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
Y +D+ I + +KA N+ Y I LLK++D+ AEK +EEWES+ + +D+R+
Sbjct: 193 AYVVAEDIKAIENVLEKA-NSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRL 251
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
N L+D YC+ GL++KAE LV+ KGR + Y LA GY + Q+ KA + KK L
Sbjct: 252 INLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVSKAADLTKKAL 311
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT-DLQDKLLDN-VQ 309
A+ +W P + ++ L+YF ++ ++ AE + LL + PT D+ LL V
Sbjct: 312 ASASN--EWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQ-RLVTPTRDIYHGLLKTYVN 368
Query: 310 NGKSNLETLRELYGNSLAGNEET 332
GK + L + + + +EET
Sbjct: 369 AGKPVSDLLHRMKKDGMEADEET 391
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 54/249 (21%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC--------- 52
+KMR +G+A ++ YN M++LY + G E++ S+ MEE+GI D T
Sbjct: 129 EKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPDVSTTHTLVAVLRKK 187
Query: 53 -TRLSAYADASDHEGIDKILT---------------------MMEAD--------PNVAL 82
T ++AY A D + I+ +L M+ A+ +V
Sbjct: 188 KTLVAAYVVAEDIKAIENVLEKANSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYH 247
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI 142
D + + + Y K GL+DKA A++ ++ IK ++ A N L G Y K V +
Sbjct: 248 DSRLINLLVDAYCKEGLMDKAEALV---DQFIKKGRMPFA-NTCYKLAGGYFKVGQVSKA 303
Query: 143 WELYKKAVKVLNNGY----RNVISSL---LKLDDLESAEKIFEEWESQALCYDTR-IPNF 194
+L KKA+ +N + NV+ SL + ++E+AE++ Q L TR I +
Sbjct: 304 ADLTKKALASASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLL--QRLVTPTRDIYHG 361
Query: 195 LIDVYCRNG 203
L+ Y G
Sbjct: 362 LLKTYVNAG 370
>gi|78708864|gb|ABB47839.1| expressed protein [Oryza sativa Japonica Group]
gi|215701127|dbj|BAG92551.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 341
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 149/323 (46%), Gaps = 43/323 (13%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y S+LK Y + EK + L +M G+ Y Y + Y E + + M
Sbjct: 48 CYGSLLKCYAEANCVEKAEELFEKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAM 106
Query: 75 EAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
E P+V+ + +A+L+K + TL
Sbjct: 107 EESGIVPDVSTTHTL-----------------VAVLRKKK----------------TLVA 133
Query: 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
Y +D+ I + +KA N+ Y I LLK++D+ AEK +EEWES+ + +D+R+
Sbjct: 134 AYVVAEDIKAIENVLEKA-NSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRL 192
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
N L+D YC+ GL++KAE LV+ KGR + Y LA GY + Q+ KA + KK L
Sbjct: 193 INLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVSKAADLTKKAL 252
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT-DLQDKLLDN-VQ 309
A+ +W P + ++ L+YF ++ ++ AE + LL + PT D+ LL V
Sbjct: 253 ASASN--EWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQ-RLVTPTRDIYHGLLKTYVN 309
Query: 310 NGKSNLETLRELYGNSLAGNEET 332
GK + L + + + +EET
Sbjct: 310 AGKPVSDLLHRMKKDGMEADEET 332
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 54/249 (21%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC--------- 52
+KMR +G+A ++ YN M++LY + G E++ S+ MEE+GI D T
Sbjct: 70 EKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPDVSTTHTLVAVLRKK 128
Query: 53 -TRLSAYADASDHEGIDKILT---------------------MMEAD--------PNVAL 82
T ++AY A D + I+ +L M+ A+ +V
Sbjct: 129 KTLVAAYVVAEDIKAIENVLEKANSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYH 188
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI 142
D + + + Y K GL+DKA A++ ++ IK ++ A N L G Y K V +
Sbjct: 189 DSRLINLLVDAYCKEGLMDKAEALV---DQFIKKGRMPFA-NTCYKLAGGYFKVGQVSKA 244
Query: 143 WELYKKAVKVLNNGY----RNVISSL---LKLDDLESAEKIFEEWESQALCYDTR-IPNF 194
+L KKA+ +N + NV+ SL + ++E+AE++ Q L TR I +
Sbjct: 245 ADLTKKALASASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLL--QRLVTPTRDIYHG 302
Query: 195 LIDVYCRNG 203
L+ Y G
Sbjct: 303 LLKTYVNAG 311
>gi|125532538|gb|EAY79103.1| hypothetical protein OsI_34209 [Oryza sativa Indica Group]
Length = 479
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 146/320 (45%), Gaps = 37/320 (11%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y S+LK Y + EK + L +M G+ Y Y + Y E + + M
Sbjct: 186 CYGSLLKCYAEANCVEKAEELFEKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAM 244
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
E + I V + V +L K KK TL Y
Sbjct: 245 E-------ESGIVPDVSTTHTLVAVLRK-----KK------------------TLVAAYV 274
Query: 135 KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
+D+ I + +KA N+ Y I LLK++D+ AEK +EEWES+ + +D+R+ N
Sbjct: 275 VAEDIKAIENVLEKA-NSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRLINL 333
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
L+D YC+ GL++KAE LV+ KGR + Y LA GY + Q+ KA + KK LA+
Sbjct: 334 LVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVSKAADLTKKALASA 393
Query: 255 QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT-DLQDKLLDN-VQNGK 312
+W P + ++ L+YF ++ ++ AE LL + PT D+ LL V GK
Sbjct: 394 SN--EWIPDLTNVLMSLNYFAEQKNVEAAEEMASLLQ-RLITPTRDIYHGLLKTYVNAGK 450
Query: 313 SNLETLRELYGNSLAGNEET 332
+ L + + + +EET
Sbjct: 451 PVSDLLDRMKKDGMEADEET 470
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 48/206 (23%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC--------- 52
+KMR +G+A ++ YN M++LY + G E++ S+ MEE+GI D T
Sbjct: 208 EKMRGMGMA-SSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPDVSTTHTLVAVLRKK 266
Query: 53 -TRLSAYADASDHEGIDKILT---------------------MMEAD--------PNVAL 82
T ++AY A D + I+ +L M+ A+ +V
Sbjct: 267 KTLVAAYVVAEDIKAIENVLEKANSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYH 326
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI 142
D + + + Y K GL+DKA A++ ++ IK ++ A N L G Y K V +
Sbjct: 327 DSRLINLLVDAYCKEGLMDKAEALV---DQFIKKGRMPFA-NTCYKLAGGYFKVGQVSKA 382
Query: 143 WELYKKAVKVLNNGY----RNVISSL 164
+L KKA+ +N + NV+ SL
Sbjct: 383 ADLTKKALASASNEWIPDLTNVLMSL 408
>gi|356565994|ref|XP_003551220.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g60770-like [Glycine max]
Length = 469
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 135/292 (46%), Gaps = 33/292 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++L L +++ YNS++ LY K G EK+ SL+ EM+ + I D YTY + A A
Sbjct: 155 MEKMKELSLPLSSMPYNSLIMLYTKVGQPEKVSSLIQEMKTSNIMLDSYTYNVWMRALAA 214
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D ++++ D +AL + E+ K
Sbjct: 215 VNDISSVERV-----HDEMMALTEL--------------------------EKRNAFKDL 243
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+AY ++T YG +V R+W + A K N Y N+I L+K DL EK F E
Sbjct: 244 TAYQFLITFYGXTSNLYEVFRVWRSLRLAFPKTANISYLNMIRVLVKSKDLLGEEKCFXE 303
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E YD R+ N LI Y + +LEKAE L H + +G + + K+ Y Q
Sbjct: 304 XECGCPTYDIRVVNVLIRAYAKLDMLEKAEELKEHARRRGAKPNGKTLEIFMDYYLQKGN 363
Query: 240 IHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
V+ + + ++ + KW P + + + F+ E D+ GAE F+E+L
Sbjct: 364 FKSTVDCLDEAISMGRWNGEKWVPXSKIIDIMMRNFEQEKDVDGAEEFLEIL 415
>gi|297800434|ref|XP_002868101.1| hypothetical protein ARALYDRAFT_915040 [Arabidopsis lyrata subsp.
lyrata]
gi|297313937|gb|EFH44360.1| hypothetical protein ARALYDRAFT_915040 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 25/226 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KMR+LG +NSM+ LY + + ++ L+ EM+E + D T L YAD
Sbjct: 160 FEKMRELGFLLKPSPFNSMISLYGQLQKLDMVEKLVREMQETKVECDSPTVNNVLRVYAD 219
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++ T ++ + + L+ + Y + G ++KA+ M
Sbjct: 220 TCKIKAMETFKTWVD-EQGIKLEGGTIVAMAKAYLRSGSIEKAIEM-------------- 264
Query: 121 SAYNVILTLYGKY-GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YG G + +V R+W+ YKK KV +NGYR V+SSLLKLD+++ AEKI+EE
Sbjct: 265 ---------YGNVAGSEKEVYRLWDEYKKETKVNDNGYRTVLSSLLKLDNVQGAEKIYEE 315
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225
W+ + D IP+ L+ Y G+ + +V + K E+H+K
Sbjct: 316 WKPEGPKLDMSIPSLLLSRYYAEGMEINIDQMVKSIRKKRYEMHLK 361
>gi|15229739|ref|NP_187745.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|12322901|gb|AAG51439.1|AC008153_12 hypothetical protein; 6614-8314 [Arabidopsis thaliana]
gi|332641514|gb|AEE75035.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 541
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 138/312 (44%), Gaps = 73/312 (23%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YNSM LY GN +K+D ++ EM+EN + D T L YA SD +DK L
Sbjct: 184 YNSMTSLYSSLGNRDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVATMDKFL---- 239
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLD--KALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
AD ++ LD LAM K E +++LYG+
Sbjct: 240 AD----------------RKEITRLDGLTMLAMAKAYE--------------LMSLYGEA 269
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI-FEEWESQALCYDTRIP 192
G+ +DV R+W+ YK + N +R +I SLLKL D + AEKI + EWE L +D RIP
Sbjct: 270 GEIEDVHRVWDKYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIP 329
Query: 193 NFLIDVYCRNGLLEKAENLVNH---------------EKL--KGREIHVKSWYYLATGYR 235
+ L+ Y G++ KA+ LVN E++ KG ++ L R
Sbjct: 330 DMLVSGYREKGMVMKADKLVNKTLWIRGLATPITLLLEEMDKKGNKVSPPGLRDLIKNLR 389
Query: 236 QNSQIHKAVEA-----MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
++Q+ KA+EA KKV + E A L + + AENF E
Sbjct: 390 DSNQLSKALEASTWMCQKKVFNLFS---------EDYATRLHLTEKVLGLEEAENFFE-- 438
Query: 291 NDKGFIPTDLQD 302
IP +++D
Sbjct: 439 ---SSIPENMKD 447
>gi|297729251|ref|NP_001176989.1| Os12g0531500 [Oryza sativa Japonica Group]
gi|255670362|dbj|BAH95717.1| Os12g0531500 [Oryza sativa Japonica Group]
Length = 352
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 7/199 (3%)
Query: 108 KKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLK 166
K E+ KG +V T G D R+W ++ + ++ Y+ +++SL +
Sbjct: 112 KDVEDHAKGNHGEKNVDVQSTSLSDRGNLD---RVWRKMRETFRKFSDTEYKCMLTSLTR 168
Query: 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
D+ AE + EWES + D+RIPN ++ Y +NG++EKAE ++H KG + +
Sbjct: 169 FGDIAEAESFYSEWESASGTRDSRIPNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYST 228
Query: 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
W GY + ++ K +E +KK L+ L KW P+ + A +++GDI AE
Sbjct: 229 WELFVWGYLSDGRMDKVLECLKKALSC---LEKWDPNPQLATAIYSQIEEKGDIEAAEKL 285
Query: 287 IELLNDKGFIPTDLQDKLL 305
+ + + G++ T++ + +L
Sbjct: 286 LVMFREAGYVTTEIYNSVL 304
>gi|224169626|ref|XP_002339288.1| predicted protein [Populus trichocarpa]
gi|222874812|gb|EEF11943.1| predicted protein [Populus trichocarpa]
Length = 140
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
+ + GL+EK E L++ G + + K+WY+ TGY +N Q KA+EAMKK +
Sbjct: 11 MLIQEGLVEKVETLIDRAISIGGDPNAKTWYHFETGYLRNGQTLKAMEAMKKEVVVSGR- 69
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLET 317
+WKPS ESLA CL+Y K+EGD+ ++F+ELL I D+Q++LL+++++ S+ +
Sbjct: 70 -RWKPSNESLATCLEYLKEEGDLEKVKDFMELLRRNDIISLDIQERLLNHIKDTDSSSDV 128
Query: 318 LRELYGNSL 326
L L N L
Sbjct: 129 LSALNNNYL 137
>gi|449479004|ref|XP_004155478.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 259
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 62/84 (73%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQKMR++G +T + YN+ML LY + G EKLD L+ EMEE GI ++R+TY R++AYA
Sbjct: 160 MQKMREVGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNVRMNAYAA 219
Query: 61 ASDHEGIDKILTMMEADPNVALDW 84
ASD ++K+L+ MEADP VA DW
Sbjct: 220 ASDITNMEKLLSKMEADPLVATDW 243
>gi|6958202|gb|AAF32491.1|AF091837_1 DNA-binding protein [Triticum aestivum]
Length = 612
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 140/294 (47%), Gaps = 11/294 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG T N +L L YK + +K+ ++ +ME+ + +TY +
Sbjct: 270 KMKDLGFPVTVFAINQLL-LLYKRVDKKKIADVLAKMEKENVKPSLFTYKLLVDTKGAIR 328
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKGAKVNS 121
D G++K++ M+A+ V D + AT+ Y G +KA A+L+ E IKG + +
Sbjct: 329 DIAGMEKVVESMQAE-GVEPDLLFQATIAKHYIFAGHREKAEAILESMEGGDIKGNR--N 385
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
A ++L LY GKKDDV R+W++ + ++ + + I S +L D+E AEK+FE+
Sbjct: 386 ACKILLPLYAFLGKKDDVERMWQVCEANPRL--DECLSAIESFGRLGDVERAEKVFEDMF 443
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ ++ N L+ VY L +K + L G + + + L Y ++
Sbjct: 444 ATWKTLSSKFYNALMKVYADQNLFKKGKELAKRMDEDGCRLGISTIDSLVKLYVGAGEVD 503
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
KA + K+ + K KP S LD + +GDI +E + L G+
Sbjct: 504 KAESILHKLSKSN----KMKPQYSSYLMLLDTYSKKGDIHNSEKVFDQLRQMGY 553
>gi|56783681|dbj|BAD81093.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|56784204|dbj|BAD81589.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|125569936|gb|EAZ11451.1| hypothetical protein OsJ_01319 [Oryza sativa Japonica Group]
Length = 611
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 23/310 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG T N +L L YK + +KL ++ ME+ + +TY + A
Sbjct: 268 KMKDLGFPVTVFSCNQLL-LLYKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGAAR 326
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
D E ++K++ M+AD + D +I AT+ Y G +KA A+L EQI+G +N
Sbjct: 327 DIEDMEKVIQAMQAD-GIEPDLLIQATIARHYIFGGYREKAEAIL----EQIEGDDINEN 381
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SA +L LY GKK DV RIW++ + ++ + + I + KL D+E AE+IFE
Sbjct: 382 RSACKFVLPLYAFLGKKADVERIWKVCEVNARL--DECMSAIEAFGKLGDVEKAEEIFEN 439
Query: 180 ----WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
W++ + Y N ++ VY L +K + L G + + L Y
Sbjct: 440 MFKTWKTLSFEY----YNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKLYS 495
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ KA + K+ +Y+ K KP + LD + +GD+ AE + G+
Sbjct: 496 DAGEVEKADSILHKL--SYKN--KIKPLYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGY 551
Query: 296 IPTDLQDKLL 305
Q +LL
Sbjct: 552 TGRIRQYQLL 561
>gi|11138066|dbj|BAB17739.1| putative DNA-binding protein [Oryza sativa Japonica Group]
Length = 591
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 23/310 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG T N +L L YK + +KL ++ ME+ + +TY + A
Sbjct: 248 KMKDLGFPVTVFSCNQLL-LLYKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGAAR 306
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
D E ++K++ M+AD + D +I AT+ Y G +KA A+L EQI+G +N
Sbjct: 307 DIEDMEKVIQAMQAD-GIEPDLLIQATIARHYIFGGYREKAEAIL----EQIEGDDINEN 361
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SA +L LY GKK DV RIW++ + ++ + + I + KL D+E AE+IFE
Sbjct: 362 RSACKFVLPLYAFLGKKADVERIWKVCEVNARL--DECMSAIEAFGKLGDVEKAEEIFEN 419
Query: 180 ----WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
W++ + Y N ++ VY L +K + L G + + L Y
Sbjct: 420 MFKTWKTLSFEY----YNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKLYS 475
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ KA + K+ +Y+ K KP + LD + +GD+ AE + G+
Sbjct: 476 DAGEVEKADSILHKL--SYKN--KIKPLYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGY 531
Query: 296 IPTDLQDKLL 305
Q +LL
Sbjct: 532 TGRIRQYQLL 541
>gi|12321886|gb|AAG50982.1|AC073395_24 hypothetical protein, 3' partial; 101251-102939 [Arabidopsis
thaliana]
Length = 532
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 132/310 (42%), Gaps = 75/310 (24%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YNSM LY GN +K+D ++ EM+EN + D T L YA SD +DK L
Sbjct: 182 YNSMTSLYSSLGNRDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVATMDKFL---- 237
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
AD ++ LD L ML + Y + G+
Sbjct: 238 AD----------------RKEITRLD-GLTML-----------------AMAKAYVRDGE 263
Query: 136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI-FEEWESQALCYDTRIPNF 194
+DV R+W+ YK + N +R +I SLLKL D + AEKI + EWE L +D RIP+
Sbjct: 264 IEDVHRVWDKYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIPDM 323
Query: 195 LIDVYCRNGLLEKAENLVNH---------------EKL--KGREIHVKSWYYLATGYRQN 237
L+ Y G++ KA+ LVN E++ KG ++ L R +
Sbjct: 324 LVSGYREKGMVMKADKLVNKTLWIRGLATPITLLLEEMDKKGNKVSPPGLRDLIKNLRDS 383
Query: 238 SQIHKAVEA-----MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+Q+ KA+EA KKV + E A L + + AENF E
Sbjct: 384 NQLSKALEASTWMCQKKVFNLFS---------EDYATRLHLTEKVLGLEEAENFFE---- 430
Query: 293 KGFIPTDLQD 302
IP +++D
Sbjct: 431 -SSIPENMKD 439
>gi|297596551|ref|NP_001042753.2| Os01g0280400 [Oryza sativa Japonica Group]
gi|255673117|dbj|BAF04667.2| Os01g0280400, partial [Oryza sativa Japonica Group]
Length = 426
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 145/312 (46%), Gaps = 23/312 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
KM+DLG T N +L L YK + +KL ++ ME+ + +TY +
Sbjct: 81 FNKMKDLGFPVTVFSCNQLL-LLYKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGA 139
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A D E ++K++ M+AD + D +I AT+ Y G +KA A+L EQI+G +N
Sbjct: 140 ARDIEDMEKVIQAMQAD-GIEPDLLIQATIARHYIFGGYREKAEAIL----EQIEGDDIN 194
Query: 121 ---SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
SA +L LY GKK DV RIW++ + ++ + + I + KL D+E AE+IF
Sbjct: 195 ENRSACKFVLPLYAFLGKKADVERIWKVCEVNARL--DECMSAIEAFGKLGDVEKAEEIF 252
Query: 178 EE----WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E W++ + Y N ++ VY L +K + L G + + L
Sbjct: 253 ENMFKTWKTLSFEY----YNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKL 308
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
Y ++ KA + K+ +Y+ K KP + LD + +GD+ AE +
Sbjct: 309 YSDAGEVEKADSILHKL--SYKN--KIKPLYTTYLMLLDSYSKKGDVHNAEKLFSKVRQM 364
Query: 294 GFIPTDLQDKLL 305
G+ Q +LL
Sbjct: 365 GYTGRIRQYQLL 376
>gi|224121668|ref|XP_002330623.1| predicted protein [Populus trichocarpa]
gi|222872227|gb|EEF09358.1| predicted protein [Populus trichocarpa]
Length = 202
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 33/223 (14%)
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126
++K+L ME D + +W + + GY K +K MLK+SE+ IK + AY +
Sbjct: 1 MEKLLMKMERDSRI--NWKVCVSAAKGYLKASFTEKTSTMLKQSEQLIKFNERRYAYKNL 58
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
L+LY G KD++ R +K + N+ Y ++IS L+K D + AE+
Sbjct: 59 LSLYAGTGSKDELYRFRNFFKNSAGFNNSSYLHMISLLMKSDGKDVAEE----------- 107
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
GL EK E V + G E++ S+ +LA GY Q+ KA E
Sbjct: 108 ---------------KGLWEKDEAFVRIVESSGVELNADSFVHLAAGYCVAGQMVKAAET 152
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289
MKK ++ + +WKP+ ++LAACL K +G +G + ++
Sbjct: 153 MKKAISI--STPEWKPNTKALAACL---KCQGVVGSSRRAFQV 190
>gi|449506017|ref|XP_004162629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 608
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 17/299 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL T ++ ML LY + KL ++ ME+ + +TY + A +
Sbjct: 266 KMKDLEFPMTPFAHDQMLILYKRIDK-RKLADILSLMEKENVKPSPFTYKILIDAKGLCN 324
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVNS 121
D G+++++ M+A+ + D + + Y GL DKA +LK EE KG+++
Sbjct: 325 DISGMEQVVDSMKAE-GIKPDVSTLSLLAKHYVSNGLKDKAKVILKDMEENNSKGSRLPC 383
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKIFE 178
++L LYG +D+V R+W++ + N +++++ KL +++ AEKIF+
Sbjct: 384 --RILLPLYGALQMEDEVRRLWKICEA-----NPHMEESMAAIVAWGKLKNVQEAEKIFD 436
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ TR N +++VY + +L K + LVN G + +W + Y +
Sbjct: 437 RFVKTWKKPSTRHYNTMMNVYGGSKMLTKGKELVNQMAESGCRMDELTWDAVVKLYVEAG 496
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ KA + K + Y KP S +D++ GD+ AE + + GF+P
Sbjct: 497 EVEKADSFLVKAVQKYGM----KPLFTSYKTLMDHYARRGDVHNAEKIFDKMIQSGFVP 551
>gi|125525413|gb|EAY73527.1| hypothetical protein OsI_01409 [Oryza sativa Indica Group]
Length = 611
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 23/310 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG T N +L L YK + +KL ++ ME+ + +TY +
Sbjct: 268 KMKDLGFPVTVFSCNQLL-LLYKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGATR 326
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
D E ++K++ M+AD + D +I AT+ Y G +KA A+L EQI+G +N
Sbjct: 327 DIEDMEKVIQAMQAD-GIEPDLLIQATIARHYIFGGYREKAEAIL----EQIEGDDINEN 381
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SA +L LY GKK DV RIW++ + ++ + + I + KL D+E AE+IFE
Sbjct: 382 RSACKFVLPLYAFLGKKADVERIWKVCEVNARL--DECMSAIEAFGKLGDVEKAEEIFEN 439
Query: 180 ----WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
W++ + Y N ++ VY L +K + L G + + L Y
Sbjct: 440 MFKTWKTLSFEY----YNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKLYS 495
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ KA + K+ +Y+ K KP + LD + +GD+ AE + G+
Sbjct: 496 DAGEVEKADSILHKL--SYKN--KIKPLYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGY 551
Query: 296 IPTDLQDKLL 305
Q +LL
Sbjct: 552 TGRIRQYQLL 561
>gi|449457725|ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 227
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 57/75 (76%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQK++++G A + + YN M+ LY++ G FE+LDSL+ EM+E G+ YDR+TY R+SAYA
Sbjct: 153 MQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIRISAYAA 212
Query: 61 ASDHEGIDKILTMME 75
ASD GI+KI+ ME
Sbjct: 213 ASDFRGIEKIMEQME 227
>gi|357131430|ref|XP_003567340.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Brachypodium distachyon]
Length = 612
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 137/293 (46%), Gaps = 10/293 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG T N +L L YK + +K+ ++ ME+ + +TY + +
Sbjct: 270 KMKDLGFPVTVFAINQLL-LLYKRVDKKKISDVLTMMEKEDVKPSLFTYKLLVDTKGASR 328
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D EG++K++ MEA+ + D ++ AT+ Y G +KA A+L+ E +K + +A
Sbjct: 329 DIEGMEKVVQSMEAE-GITPDLLLQATIAKHYIFGGHREKAEAILESMEGDMKENR--NA 385
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+++ LY GKKDDV RIW++ + ++ + + I + +L D+E AE++F
Sbjct: 386 CKMVMPLYAFLGKKDDVERIWKVCQSNTRL--DECLSAIEAFGRLGDVEKAEEVFGNMFK 443
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
++ N ++ VY L++K + L + G + + + L Y ++ K
Sbjct: 444 TWKTLSSKYYNAMMRVYANQNLMDKGKELAKRMEEDGCRLGISTLDSLVKLYVDAGEVEK 503
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
A + K+ K KP S LD + GD+ +E L G+
Sbjct: 504 AESLLHKL----SVKNKMKPQYSSYLMLLDSYSKIGDVHNSEKVFSKLRQMGY 552
>gi|302798913|ref|XP_002981216.1| hypothetical protein SELMODRAFT_53460 [Selaginella moellendorffii]
gi|300151270|gb|EFJ17917.1| hypothetical protein SELMODRAFT_53460 [Selaginella moellendorffii]
Length = 463
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 9/286 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M++ L T +N + LY + + ++ EM + I+ + TY + A
Sbjct: 131 LKLMKEKNLLTTATAFNKLFHLYANKKKEDGIPVILREMRDMRISPNVETYNILIGIKAK 190
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D EG++++ + M+ D + + I T+ +GY G +KA+A LK++ + +
Sbjct: 191 KGDTEGMERLFSKMKCDGDGTPNCEILCTLASGYVNAGDHEKAMAYLKEAVASEEFQESR 250
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ ++ LY G+ D + RIW ++ V N Y I++ K+ ++ AEK+F E
Sbjct: 251 RVHDKVIALYAAMGRADMIDRIWRFTRRFPVVSANSYVATIAAYEKVGRIDRAEKVFAEL 310
Query: 181 -ESQALCYDTR-IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + L +P L YC G + KAE L+ + I+ S+++L GY ++
Sbjct: 311 TEKRTLLRPAHYVP--LFRAYCEGGEMGKAEKLLERIRHGNGHINNLSYHHLVAGYMKSG 368
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284
A E + ++ + P +++ L D+ AE
Sbjct: 369 NPKMAAETLNRMFEE-----RVPPCFDTVMLILKEHAKNADVSSAE 409
>gi|302801860|ref|XP_002982686.1| hypothetical protein SELMODRAFT_53462 [Selaginella moellendorffii]
gi|300149785|gb|EFJ16439.1| hypothetical protein SELMODRAFT_53462 [Selaginella moellendorffii]
Length = 463
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 9/286 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M++ L T +N + LY + + ++ EM + I+ + TY + A
Sbjct: 131 LKLMKEKNLLTTATAFNKLFHLYANKKKEDGIPVILREMRDMRISPNVETYNILIGIKAK 190
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D EG++++ + M+ D + + I T+ +GY G +KA+A LK++ + +
Sbjct: 191 KGDTEGMERLFSKMKCDGDGTPNGEILCTLASGYVNAGDHEKAMAYLKEAVASDEFRESR 250
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ ++ LY G+ D + RIW ++ V N Y I++ K+ ++ AEK+F E
Sbjct: 251 RVHDKVIALYAAMGRADMIDRIWRFTRRFPVVSANSYVATIAAYEKVGRIDRAEKVFAEL 310
Query: 181 -ESQALCYDTR-IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + L +P L YC G + KAE L+ + I+ S+++L GY ++
Sbjct: 311 TEKRTLLRPAHYVP--LFRAYCEGGEMGKAEKLLERIRHGNGHINNLSYHHLVAGYMKSG 368
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284
A E + ++ + P +++ L D+ AE
Sbjct: 369 NPKMAAETLTRMFEE-----RVPPCFDTVMLILKEHAKNADVNSAE 409
>gi|449438238|ref|XP_004136896.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Cucumis sativus]
gi|449478839|ref|XP_004155431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Cucumis sativus]
Length = 406
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 110/216 (50%), Gaps = 6/216 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM++ + T + +N M+ LY G EK+ S++ ++++ + D +TY +S+ A A
Sbjct: 181 EKMKESDIPLTALPFNEMMTLYTSIGQVEKVSSIVDDLKQRMVHPDIFTYNLWISSLAAA 240
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ +G+ +IL M +PN +WV Y + N Y K L + + E + G
Sbjct: 241 LNIDGVKQILNEMNHNPNSNENWVRYIELVNIYVKSANLLHSES--NSVVESVSGISQRE 298
Query: 122 --AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y++++ LY G KD + +IW L K+ + Y ++S L LDDL+ ++ +
Sbjct: 299 WITYDLLIILYAGLGNKDKIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVID 358
Query: 179 EW-ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+W +S +D N L++ + GL EKA + VN
Sbjct: 359 QWKQSTTTDFDISSCNRLVNAFIEAGLHEKANSFVN 394
>gi|449437710|ref|XP_004136634.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
gi|449506005|ref|XP_004162626.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 606
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 22/326 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL TT YN +L L YK + K+ ++ ME+ + +TY + A +
Sbjct: 262 KMKDLEFPMTTFAYNQVLVL-YKRNDRRKIADVLLLMEKENVKPSPFTYKILIDAKGLSK 320
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++++ M+A+ + LD + Y GL DKA A LK+ EE I
Sbjct: 321 DISGMEQVVDTMKAE-GIELDVFALCLLAKHYVSCGLKDKAKATLKEMEE-INSKGSRWP 378
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKIFEE 179
++L LYG+ +D+V R+WE+ + N +++++ KL ++ AEKIF++
Sbjct: 379 CRLLLPLYGELEMEDEVRRLWEICEA-----NPHIEECMAAIVAWGKLKNIHEAEKIFDK 433
Query: 180 ----WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
W + + T+ +I VY +L K + LVN G I +W + Y
Sbjct: 434 VVKTWPKKKI--STKHYCTMIKVYGDCKMLTKGKELVNQMAESGYSIDPLAWDAVVKLYV 491
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ ++ KA + K + Y+ +P S ++++ GD+ AE + G+
Sbjct: 492 EAGEVEKADTFLVKAVKKYEM----RPLYCSYRTLMNHYARRGDVHNAEKIFYKMRQSGY 547
Query: 296 IPTDLQ-DKLLDNVQNGKSNLETLRE 320
P Q + L+ N K+ +RE
Sbjct: 548 GPWFNQFETLIQAYVNSKTPAYGMRE 573
>gi|125535921|gb|EAY82409.1| hypothetical protein OsI_37623 [Oryza sativa Indica Group]
Length = 611
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 140/306 (45%), Gaps = 15/306 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG + N +L L YK + +KL ++ ME+ + +TY + A
Sbjct: 268 KMKDLGFPVSVFSCNQLL-LLYKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGAAR 326
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
D E ++K++ M+AD + D + AT+ Y G +KA A+L EQ+ G +N
Sbjct: 327 DIEDMEKVIQAMQAD-GIEPDLLFQATIARHYIFGGYREKAEAIL----EQMVGDDINEN 381
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SA +L LY GK DDV RIW++ + ++ + + I + KL D+E AE+IF+
Sbjct: 382 RSACKFVLPLYAFLGKNDDVERIWKVCEANARL--DECMSAIEAFGKLGDVEKAEEIFDN 439
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
++ N ++ VY L +K + L G + + L Y +
Sbjct: 440 MFKTWKTLSSKYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPYTLDSLVKLYSDAGE 499
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA + K+ +Y+ K KP + LD + +GD+ AE + G+
Sbjct: 500 VEKADSILHKL--SYKN--KIKPMYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGYTGRI 555
Query: 300 LQDKLL 305
Q +LL
Sbjct: 556 RQYQLL 561
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN+MLK+Y F+K L M ++G YT + + Y+DA + E D IL +
Sbjct: 452 YNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPYTLDSLVKLYSDAGEVEKADSILHKLS 511
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
+ + Y + + Y K G + A + K + ++ Y ++L Y
Sbjct: 512 YKNKIKPMYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGYTGRIRQ-YQLLLEAY 565
>gi|242073288|ref|XP_002446580.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
gi|241937763|gb|EES10908.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
Length = 415
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 108/213 (50%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D L+ +VYN M+ LY G +K++ + E++ ++ D +TY R+SA A
Sbjct: 185 FERMKDANLSMDALVYNEMMTLYISVGELDKVEIIAEELKRQNVSPDLFTYNLRVSAAAA 244
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D EG IL M DPN W +Y + + Y L + L ++E +I +
Sbjct: 245 SMDLEGFKGILDEMSKDPNSKEGWTLYRNLASVYVDASQLVGSGNSLVEAEAKISQREWI 304
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++ L+ G ++ + IW+ + + ++ + Y VISS L L+ A +I ++
Sbjct: 305 T-YDFLVILHAGLGNQERIKDIWKSMVMTSQRMTSRNYICVISSYLMCGQLKDAGEIVDQ 363
Query: 180 WE-SQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W+ S+A +D N L+D GL + A+
Sbjct: 364 WQRSKAPEFDISACNRLLDALLSAGLTDTADRF 396
>gi|115487560|ref|NP_001066267.1| Os12g0170100 [Oryza sativa Japonica Group]
gi|77553759|gb|ABA96555.1| DNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113648774|dbj|BAF29286.1| Os12g0170100 [Oryza sativa Japonica Group]
gi|125578643|gb|EAZ19789.1| hypothetical protein OsJ_35368 [Oryza sativa Japonica Group]
gi|215767656|dbj|BAG99884.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 611
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 140/306 (45%), Gaps = 15/306 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG + N +L L YK + +KL ++ ME+ + +TY + A
Sbjct: 268 KMKDLGFPVSVFSCNQLL-LLYKRVDKKKLGDVLTMMEKENVKPSLFTYKLLVDTKGAAR 326
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
D E ++K++ M+AD + D + AT+ Y G +K+ A+L EQ+ G +N
Sbjct: 327 DIEDMEKVIQAMQAD-GIEPDLLFQATIARHYIFGGYREKSEAIL----EQMVGDDINEN 381
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SA +L LY GK DDV RIW++ + ++ + + I + KL D+E AE+IF+
Sbjct: 382 RSACKFVLPLYAFLGKNDDVERIWKVCEANARL--DECMSAIEAFGKLGDVEKAEEIFDN 439
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
++ N ++ VY L +K + L G + + L Y +
Sbjct: 440 MFKTWKTLSSKYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPYTLDSLVKLYSDAGE 499
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA + K+ +Y+ K KP + LD + +GD+ AE + G+
Sbjct: 500 VEKADSILHKL--SYKN--KIKPMYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGYTGRI 555
Query: 300 LQDKLL 305
Q +LL
Sbjct: 556 RQYQLL 561
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN+MLK+Y F+K L M ++G YT + + Y+DA + E D IL +
Sbjct: 452 YNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPYTLDSLVKLYSDAGEVEKADSILHKLS 511
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
+ + Y + + Y K G + A + K + ++ Y ++L Y
Sbjct: 512 YKNKIKPMYTTYLMLLDSYSKKGDVHNAEKLFSKVRQMGYTGRIRQ-YQLLLEAY 565
>gi|307136025|gb|ADN33879.1| DNA-binding protein [Cucumis melo subsp. melo]
Length = 608
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 151/326 (46%), Gaps = 20/326 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M+DL TT Y+ ML LY K + ++ ++ ME+ + +TY + A
Sbjct: 264 FNRMKDLEFPMTTFAYDQMLILY-KRIDRRRIADILSLMEKENVKPRPFTYKILIDAKGL 322
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKGAKV 119
++D G+++++ M+A+ + LD + Y GL DKA+ +LK +EE KG++
Sbjct: 323 SNDISGMEQVVDTMKAE-GIKLDVDTLLLLAKHYVLGGLKDKAMPILKATEEVNSKGSRW 381
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKI 176
Y +L LYG+ +D+V R+WE+ + N +++++ KL +++ AEKI
Sbjct: 382 PCRY--LLPLYGELQMEDEVRRLWEICEP-----NPNVEECMAAIVAWGKLKNIQEAEKI 434
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+ T+ + +I VY + +L K + LVN G I W + Y +
Sbjct: 435 FDRVVKTWKRLSTKHYSTMIKVYGDSKMLTKGKELVNQMAKSGCRIDPMIWDAVVKLYVE 494
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ KA + K + Y KP +S + ++ +GD+ +E + G+
Sbjct: 495 AGEVEKADSFLFKAVKQYGM----KPLFDSYRTLMVHYARKGDVHNSEKIFHKIRQSGY- 549
Query: 297 PTDLQD--KLLDNVQNGKSNLETLRE 320
PT L+ N K+ +RE
Sbjct: 550 PTHFGQFVTLVQAYLNAKTPAYGMRE 575
>gi|356557435|ref|XP_003547021.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
mitochondrial-like [Glycine max]
Length = 507
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 8/292 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+LG + +V+N ++ L+ G + + L+ +M+ + +T TY + A+
Sbjct: 162 MKKMRELGFPISHLVFNRLIILHSSPGRRKMIPKLLTQMKADKVTPHVSTYNILMKIEAN 221
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + K+ M+ V + + Y + + L A ++ E+ I G
Sbjct: 222 EHNLENLVKVFGRMKVA-QVEPNEISYCILAIAHAVARLYTATEAYVEAVEKSITGNNW- 279
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S +V+L LYG G + ++ R+W ++ + + Y I + ++ L AE+I+ E
Sbjct: 280 STLDVLLMLYGYLGNQKELERVWATIQELPSIRSKSYMLAIEAFGRIGQLNRAEEIWLEM 339
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+S N ++ VYC++G +++A L + K G + + +++ LA G ++
Sbjct: 340 KSTKGLKSVEQFNSMMSVYCKHGFIDRAAKLYKNMKASGCKPNAITYHQLALGCLKSGMA 399
Query: 241 HKAVEAMKKVLAAYQTLVKW----KPSVESLAACLDYFKDEGDIGGAENFIE 288
+A++ + L T+ K P +E+ + ++ F ++GD+G E E
Sbjct: 400 EQALKTLD--LGLRLTISKRVRNSTPWLETTLSIVEIFAEKGDVGNVERLFE 449
>gi|255562320|ref|XP_002522167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538605|gb|EEF40208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 342
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 146/321 (45%), Gaps = 16/321 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+DL TT N +L L YK + +K+ ++ ME+ I +TY + ++D
Sbjct: 1 MKDLEFPVTTFACNQLL-LLYKRLDKKKIADVLLLMEKENIKPSLFTYKLLIDTKGQSND 59
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-- 121
G+D+I+ M+AD + D I A + Y GL +KA A+LK+ E G +
Sbjct: 60 LTGMDQIVETMKAD-GIEPDINIRAILAKHYASGGLKEKAEAILKEME----GGNLEEHR 114
Query: 122 -AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
A ++L LY GK D+V R+W++ + + ++ VI + KL ++ AE++F
Sbjct: 115 WACRLLLPLYAALGKADEVERVWKVCESSPQL--EECVAVIEAWGKLKKIDKAEEVFNRM 172
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ +R + L+ VY + +L ++L+ G I +W L Y + ++
Sbjct: 173 LTTWKKLSSRHYSALLKVYASHKMLANGKDLIKKMADSGCRIGPLTWDSLVKLYVEAGEV 232
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KA + K AA Q + KP S +D + GD+ AE + G++
Sbjct: 233 EKADSVLHK--AAQQNHM--KPMFSSYIVIMDQYAKRGDVHNAEKMFHRMRQAGYVARLR 288
Query: 301 Q-DKLLDNVQNGKSNLETLRE 320
Q L+ N K+ +RE
Sbjct: 289 QFQALVQTYINAKAPAYGIRE 309
>gi|302789381|ref|XP_002976459.1| hypothetical protein SELMODRAFT_416459 [Selaginella moellendorffii]
gi|300156089|gb|EFJ22719.1| hypothetical protein SELMODRAFT_416459 [Selaginella moellendorffii]
Length = 509
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 146/301 (48%), Gaps = 12/301 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY-A 59
MQ++R +G+ ++ Y+ ML Y G + + ++ E++ +G+ DR Y L+A +
Sbjct: 156 MQELRGIGI-KSLQPYHLMLSFYKLRGMEMRFERMVTEIKGSGLALDRSFYTILLAARDS 214
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D ++ +L ME + LD V V Y + GL K+ +L++ E+ +K +
Sbjct: 215 FGGDMVAVEDVLAEMEGR-GLKLDAVGCLAVAGIYLRSGLRHKSERVLQRLEKSLKSGEF 273
Query: 120 ---NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
NS +L ++GK G +D V RIW +++ + I + ++ ++ AE +
Sbjct: 274 KYSNSIRRRMLAMFGKLGDRDAVDRIWHSIERSASTTVEDFIFGIEAFGRVGKMDEAEDM 333
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE--IHVKSWYYLATGY 234
+ + C + R+ N + V G + +A LV E++KG + +++ L Y
Sbjct: 334 YMRVGCNS-C-NPRLHNAFLAVLVEQGDVIRAVALV--ERMKGVRCLLSTVTYHLLIKVY 389
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ + +A A + + +A+ L +PS E+LA L++F GD+ +E ++ + G
Sbjct: 390 LKAGDVSRATLAFESLRSAFGKLEWPRPSSETLAVMLEFFVGTGDVQASERLVKKWMEDG 449
Query: 295 F 295
F
Sbjct: 450 F 450
>gi|357439923|ref|XP_003590239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479287|gb|AES60490.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 24/301 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KMR+LG T N +L +Y K + D L+ ME+ + YTY + ++
Sbjct: 265 KMRELGFPVTAFACNQLLLIYKKIDKKKIADVLLM-MEKENVKPSSYTYKILIDVKGLSN 323
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D +G+ +I+ M+A+ LD + A++ Y GL +K A+LK +I+G +
Sbjct: 324 DIDGMSQIVETMKAE-GCELDHLTRASLARHYAAAGLTEKTEAILK----EIEGENLKEN 378
Query: 122 --AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE- 178
+L LY G+ D+V RIW++ + +V I + +L +E AE +FE
Sbjct: 379 MWVCPTLLRLYAILGRADEVERIWKVCESKPRV--EDCLAAIEAWGRLKKIEEAEAVFEM 436
Query: 179 ---EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+W+ A Y++ L+ +Y R+ +L K ++L+ G I +W L + Y
Sbjct: 437 MSNKWKLTARNYES-----LLKIYIRHKMLNKGKDLIKTMGDSGCTIGPTTWDALVSLYV 491
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
Q ++ KA ++K L K KP + ++ + GD+ AE L +
Sbjct: 492 QAGEVEKADTVLQKALQQN----KMKPMFTTFMTIMEQYAKRGDVHNAEKIFYRLRQANY 547
Query: 296 I 296
I
Sbjct: 548 I 548
>gi|357439973|ref|XP_003590264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479312|gb|AES60515.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 557
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 24/301 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KMR+LG T N +L +Y K + D L+ ME+ + YTY + ++
Sbjct: 216 KMRELGFPVTAFACNQLLLIYKKIDKKKIADVLLM-MEKENVKPSSYTYKILIDVKGLSN 274
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D +G+ +I+ M+A+ LD + A++ Y GL +K A+LK +I+G +
Sbjct: 275 DIDGMSQIVETMKAE-GCELDHLTRASLARHYAAAGLTEKTEAILK----EIEGENLKEN 329
Query: 122 --AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE- 178
+L LY G+ D+V RIW++ + +V I + +L +E AE +FE
Sbjct: 330 MWVCPTLLRLYAILGRADEVERIWKVCESKPRV--EDCLAAIEAWGRLKKIEEAEAVFEM 387
Query: 179 ---EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+W+ A Y++ L+ +Y R+ +L K ++L+ G I +W L + Y
Sbjct: 388 MSNKWKLTARNYES-----LLKIYIRHKMLNKGKDLIKTMGDSGCTIGPTTWDALVSLYV 442
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
Q ++ KA ++K L K KP + ++ + GD+ AE L +
Sbjct: 443 QAGEVEKADTVLQKALQQN----KMKPMFTTFMTIMEQYAKRGDVHNAEKIFYRLRQANY 498
Query: 296 I 296
I
Sbjct: 499 I 499
>gi|224137686|ref|XP_002322619.1| predicted protein [Populus trichocarpa]
gi|222867249|gb|EEF04380.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 17/333 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL L T YN +L L YK + +K+ ++ ME+ + +TY + ++
Sbjct: 130 KMKDLELPITLFSYNQLL-LLYKRHDKKKIADVLLSMEKENVKPSLFTYILLIDTKGQSN 188
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D G+++I M+A+ + D A + Y GL +KA +LK+ E G +
Sbjct: 189 DIAGMEQIAETMKAE-GIEPDIKTQAIMARHYVSGGLKEKAEIVLKEME----GGNLEEH 243
Query: 122 --AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
A +L LYG GK D+V R+W+ KK+ ++ + I + +L + AE +FE
Sbjct: 244 RWACQFMLPLYGTLGKADEVSRLWKFCKKSPRL--DECMAAIEAWGQLKKIPEAEAVFEL 301
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
++ + L+ VY N +L K ++L+ G I +W L Y + +
Sbjct: 302 MSKTWKKLSSKHYSALLKVYANNKMLSKGKDLIKQMGDSGCRIGPLTWDALIKLYVEAGE 361
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA + K + Q KP S ++ + +GDI AE + G+
Sbjct: 362 VEKADSILNKAVQQNQM----KPMFSSYMIIMEKYAKKGDIHNAEKMFHRMRQAGYQARS 417
Query: 300 LQ-DKLLDNVQNGKSNLETLRE-LYGNSLAGNE 330
Q L+ N K+ +RE L + L N+
Sbjct: 418 KQFQTLIQAYINAKAPCYGMRERLKADGLFANK 450
>gi|125548508|gb|EAY94330.1| hypothetical protein OsI_16098 [Oryza sativa Indica Group]
Length = 430
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D L+ +VYN M+ LY G +K+ + E++ + D +TY R+SA A
Sbjct: 200 FKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAA 259
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D EG IL M DPN W +Y + Y G L + L ++E +I +
Sbjct: 260 SMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISQREWI 319
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++ L+ G +D + IW+ + + ++ + Y V+SS L L+ A ++ ++
Sbjct: 320 T-YDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQ 378
Query: 180 WE-SQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W+ S+A +D N L D + G + A +
Sbjct: 379 WQRSKAPEFDISACNRLFDAFLNAGFTDTANSF 411
>gi|21740710|emb|CAD40831.1| OSJNBa0086B14.3 [Oryza sativa Japonica Group]
gi|116310079|emb|CAH67100.1| H0818E04.17 [Oryza sativa Indica Group]
Length = 430
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D L+ +VYN M+ LY G +K+ + E++ + D +TY R+SA A
Sbjct: 200 FKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAA 259
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D EG IL M DPN W +Y + Y G L + L ++E +I +
Sbjct: 260 SMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISRREWI 319
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++ L+ G +D + IW+ + + ++ + Y V+SS L L+ A ++ ++
Sbjct: 320 T-YDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQ 378
Query: 180 WE-SQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W+ S+A +D N L D + G + A +
Sbjct: 379 WQRSKAPEFDISACNRLFDAFLNAGFTDTANSF 411
>gi|224089975|ref|XP_002308888.1| predicted protein [Populus trichocarpa]
gi|222854864|gb|EEE92411.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KMRDL T N +L L YK + +K+ ++ ME+ + +TY + ++
Sbjct: 213 KMRDLEFPITPFACNQLL-LLYKRLDKKKIADVLLLMEKENVKPSLFTYKILIDTKGQSN 271
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D G+D+I+ M+A+ + D A + Y GL +KA A+LK +++G +
Sbjct: 272 DMTGMDQIVETMKAE-GIEPDIRTQAIMARHYVSGGLKEKAEAILK----EMEGGNLEEH 326
Query: 122 --AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
A +L LYG GK D+V R+W+ +K+ ++ + I + +L ++ AE +FE
Sbjct: 327 RWACRFMLPLYGALGKADEVSRVWKFCEKSPRL--DECMAAIEAWGRLKKIDEAEAVFEL 384
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+R + L+ VY + +L K ++L+ G I +W L Y + +
Sbjct: 385 MSKTWKKLSSRHYSTLLKVYANHKMLSKGKDLIKRMGDSGCRIGPLTWDALVKLYVEAGE 444
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ KA + K A Q K KP S ++ + +GDI AE + G+
Sbjct: 445 VEKADSILNK--AVQQN--KIKPMYSSFLIIMERYATKGDIHNAEKMFHRMRQAGY 496
>gi|225434953|ref|XP_002281058.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
mitochondrial [Vitis vinifera]
Length = 550
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 141/297 (47%), Gaps = 4/297 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+LG + +V+N ++ L+ + + ++ +M+ + + TY + A+
Sbjct: 205 MKKMRELGHPISYLVFNRLIILHSSPHRRKIIPRILTQMKADKVARHVSTYNILMKIEAN 264
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ EG+ K+ M+ V + V Y + + L A A ++ E+ I G
Sbjct: 265 EHNIEGLVKVFGEMKQQ-QVEPNEVSYCLLATAHAVAKLYTVAEAYVEAVEKSITGNNW- 322
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S +V++ LYG GK D+ R W + ++ V + Y I + ++ L AE+++ E
Sbjct: 323 STLDVLIILYGYLGKPTDLERTWGIVQELPHVRSKSYMLAIEAFGRIGQLNRAEELWLEI 382
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+S+ T N +I VY ++G ++KA L ++ G + + ++ LA G + +
Sbjct: 383 KSKKELKSTEQFNSMISVYSKHGFIDKASGLFREMEMNGCKANAITYRNLALGCLKAGLL 442
Query: 241 HKAVEAMK--KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+A++ ++ K L + K P +E+ + ++ F + GD+ AE E L +
Sbjct: 443 EEALKTLELGKGLTISTRIRKSIPWLETTLSIVEIFSENGDVENAEKLFEELKTANY 499
>gi|356547249|ref|XP_003542028.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
mitochondrial-like [Glycine max]
Length = 507
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 137/292 (46%), Gaps = 8/292 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+LG + +V+N ++ L+ G + + L+ +M+ + +T TY + A+
Sbjct: 162 MKKMRELGFLISHLVFNRLIILHSSPGRRKMIPKLLTQMKADKVTPHVSTYNILMKIEAN 221
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + K + M+ VA + + Y + + L A ++ E+ I G
Sbjct: 222 EHNLENLVKFFSRMKV-AQVAPNEISYCILAIAHAVARLYTATEAYVEAVEKSITGNNW- 279
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S +V+L LYG G + ++ R+W ++ V + Y I + ++ L AE+++ E
Sbjct: 280 STLDVLLMLYGYLGNQKELERVWATIRELPSVRSKSYMLAIEAFGRIGQLNQAEELWLEM 339
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
ES N ++ VYC++G + KA L + K G + + ++ LA G ++
Sbjct: 340 ESTKGLKSVEQFNSMMSVYCKHGFIGKAAKLYKNMKASGCKPNAITYRQLALGCLKSGMA 399
Query: 241 HKAVEAMKKVLAAYQTLVKWK----PSVESLAACLDYFKDEGDIGGAENFIE 288
+ ++ + L T+ K P +E+ + ++ F ++GD+G E E
Sbjct: 400 EQGLKTLD--LGLRLTISKRVRNSIPWLETTLSIVEIFAEKGDMGNVERLFE 449
>gi|302811145|ref|XP_002987262.1| hypothetical protein SELMODRAFT_426086 [Selaginella moellendorffii]
gi|300144897|gb|EFJ11577.1| hypothetical protein SELMODRAFT_426086 [Selaginella moellendorffii]
Length = 564
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 145/301 (48%), Gaps = 12/301 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY-A 59
MQ++R +G+ ++ Y+ ML Y G + + ++ E++ +G+ DR Y L+A +
Sbjct: 123 MQELRGIGI-KSLQPYHLMLSFYKLRGMEMRFERMVTEIKGSGLALDRSFYTILLAARDS 181
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D ++ +L ME + LD V V Y + GL K+ +L++ E+ +K +
Sbjct: 182 FGGDMVAVEDVLAEMEGR-GLKLDAVGCLAVAGIYLRSGLRHKSERVLQRLEKSLKSGEF 240
Query: 120 ---NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
NS +L ++GK G +D V RIW +++ + I + ++ ++ AE +
Sbjct: 241 KDSNSIRRRMLAMFGKLGDRDAVDRIWHSIERSASTTVEDFIFGIEAFGRVGKMDEAEDM 300
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE--IHVKSWYYLATGY 234
+ + + R+ N + V G + +A LV E++KG + +++ L Y
Sbjct: 301 YMRVGCNSC--NPRLHNAFLAVLVEQGDVIRAVALV--ERMKGVRCLLSTVTYHLLIKVY 356
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ + +A A + + +A+ L +PS E+LA L++F GD+ +E ++ + G
Sbjct: 357 LKAGDVSRATLAFESLRSAFGKLEWPRPSSETLAVMLEFFVGIGDVQASERLVKKWMEDG 416
Query: 295 F 295
F
Sbjct: 417 F 417
>gi|125590560|gb|EAZ30910.1| hypothetical protein OsJ_14991 [Oryza sativa Japonica Group]
Length = 471
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D L+ +VYN M+ LY G +K+ + E++ + D +TY R+SA A
Sbjct: 241 FKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAA 300
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D EG IL M DPN W +Y + Y G L + L ++E +I +
Sbjct: 301 SMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISRREWI 360
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++ L+ G +D + IW+ + + ++ + Y V+SS L L+ A ++ ++
Sbjct: 361 T-YDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQ 419
Query: 180 WE-SQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W+ S+A +D N L D + G + A +
Sbjct: 420 WQRSKAPEFDISACNRLFDAFLNAGFTDTANSF 452
>gi|242078281|ref|XP_002443909.1| hypothetical protein SORBIDRAFT_07g004200 [Sorghum bicolor]
gi|241940259|gb|EES13404.1| hypothetical protein SORBIDRAFT_07g004200 [Sorghum bicolor]
Length = 521
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 142/300 (47%), Gaps = 10/300 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+L L + VYN ++ L+ + + ++++M+ + +T TY L A+
Sbjct: 176 MRKMRELSLPISPYVYNRLIILHSSPSRRKTISKILYQMKADRVTPHTSTYNILLKIQAN 235
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +G+ ++ + M+ +PN + Y + + L ++ E + G
Sbjct: 236 EHNIDGLARVFSDMKRAKIEPNE----ITYGILAISHAVARLYTVCHTYVEAIENSMTGT 291
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S ++L LYG GK+ ++ R WE+ + V + + I + K+ ++ AEKI+
Sbjct: 292 NW-STLEILLILYGYLGKEKELKRTWEIMQDLPHVRSKSFTVAIEAFGKVGSIDQAEKIW 350
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ +S T N ++ VYCR+G+++KA ++ + G + + ++ +LA G ++
Sbjct: 351 VQIKSTKKLSLTEQFNSILSVYCRHGVVDKASSVFKEMRANGCQPNAITYRHLALGCLKS 410
Query: 238 SQIHKAVEA--MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ +A+ M K + + P +E+ L+ F + GD+ A+ LN+ +
Sbjct: 411 GLVKEALNTIDMGKKEVVTKKVRSSTPWLETTHLLLENFAEIGDLENAKRLYSELNESKY 470
>gi|115458674|ref|NP_001052937.1| Os04g0450200 [Oryza sativa Japonica Group]
gi|113564508|dbj|BAF14851.1| Os04g0450200, partial [Oryza sativa Japonica Group]
Length = 292
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D L+ +VYN M+ LY G +K+ + E++ + D +TY R+SA A
Sbjct: 62 FKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAA 121
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D EG IL M DPN W +Y + Y G L + L ++E +I +
Sbjct: 122 SMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISRREWI 181
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++ L+ G +D + IW+ + + ++ + Y V+SS L L+ A ++ ++
Sbjct: 182 T-YDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQ 240
Query: 180 WE-SQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W+ S+A +D N L D + G + A +
Sbjct: 241 WQRSKAPEFDISACNRLFDAFLNAGFTDTANSF 273
>gi|225441211|ref|XP_002266581.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Vitis vinifera]
Length = 587
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 141/300 (47%), Gaps = 21/300 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG TT N +L L YK + +K+ ++ ME+ + +TY + ++
Sbjct: 245 KMKDLGFPITTFACNQLL-LLYKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKGQSN 303
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D G+++I+ M+A +PN+ + ++ G GL +KA A+LK +++G +
Sbjct: 304 DITGMEQIVETMKAEGIEPNLQVQSILVRHYVFG----GLKEKAEAILK----EMEGGNL 355
Query: 120 NS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V+L Y GK DDV RIW++ + ++ + I + KL +E AE I
Sbjct: 356 KENRWVCRVLLPPYAALGKADDVERIWKVCESNPRLPE--FVAAIEAYGKLKKVEEAEAI 413
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F + ++ + L+ VY + +L K ++LV G I +W L Y +
Sbjct: 414 FNKMSKTFKRLSSKHYSALLKVYADHKMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVE 473
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ KA + ++K A Q+ + KP + A +D + GDI +E + G++
Sbjct: 474 AGEVEKADKILQK--AMQQSPI--KPMFSTYMAIMDQYAKRGDIHNSEKMFHQMRQSGYV 529
>gi|297739953|emb|CBI30135.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 141/300 (47%), Gaps = 21/300 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG TT N +L L YK + +K+ ++ ME+ + +TY + ++
Sbjct: 282 KMKDLGFPITTFACNQLL-LLYKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKGQSN 340
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D G+++I+ M+A +PN+ + ++ G GL +KA A+LK +++G +
Sbjct: 341 DITGMEQIVETMKAEGIEPNLQVQSILVRHYVFG----GLKEKAEAILK----EMEGGNL 392
Query: 120 NS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V+L Y GK DDV RIW++ + ++ + I + KL +E AE I
Sbjct: 393 KENRWVCRVLLPPYAALGKADDVERIWKVCESNPRLPE--FVAAIEAYGKLKKVEEAEAI 450
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F + ++ + L+ VY + +L K ++LV G I +W L Y +
Sbjct: 451 FNKMSKTFKRLSSKHYSALLKVYADHKMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVE 510
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ KA + ++K A Q+ + KP + A +D + GDI +E + G++
Sbjct: 511 AGEVEKADKILQK--AMQQSPI--KPMFSTYMAIMDQYAKRGDIHNSEKMFHQMRQSGYV 566
>gi|224125058|ref|XP_002319492.1| predicted protein [Populus trichocarpa]
gi|222857868|gb|EEE95415.1| predicted protein [Populus trichocarpa]
Length = 208
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 103 ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS 162
ALA L K E+ + AK N + +LY G K ++ R W +K + N+GY ++ S
Sbjct: 45 ALARLLKGNER-RYAKEN-----LFSLYADVGNKYELHRFWRFFKNSASFYNSGYLHITS 98
Query: 163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
SL+K DD + AE+++EEW S +D ++PN + Y + GL EKA + + + E+
Sbjct: 99 SLMKSDDFDGAEEVWEEWLSLKTLFDVQVPNAMFTCYSKKGLWEKARGICEKD-CREWEL 157
Query: 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
S+ LATGY + K E +KK + A+
Sbjct: 158 GAYSFDLLATGYSVGGLMVKTTERIKKAIWAW 189
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 152/325 (46%), Gaps = 24/325 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G+A T YNS++ K ++ S + EM ENG D +TY +S Y +
Sbjct: 478 LKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIE 537
Query: 61 ASDHEGIDK-ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ--IKGA 117
A + DK + M+E V + V+ + N Y K G + +A + + EQ + A
Sbjct: 538 AGEFASADKYVKEMLEC--GVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDA 595
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
K Y V++ K GK +D I+ E+ K + Y +I KL +++ A I
Sbjct: 596 K---TYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSI 652
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+E L + I N L+ +CR+G +EKA+ L++ KG + ++ + GY +
Sbjct: 653 FDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCK 712
Query: 237 NSQIHKAVE-----AMKKVLA---AYQTLVKWKPSVESLAACLDYFK--DEGDIGGAENF 286
+ + +A + +K ++ Y TLV + + + F+ ++G + F
Sbjct: 713 SGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPF 772
Query: 287 IELLN-----DKGFIPTDLQDKLLD 306
L+N K + TD+ ++L+D
Sbjct: 773 NALINWVFKFGKTELTTDMINRLMD 797
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 37/253 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M GL ++YN +L + ++G EK L+ EM G + TYCT + Y +
Sbjct: 655 EMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSG 714
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D ++ M+ V D +Y T+ +G ++ +++A+ + + +E KG +SA
Sbjct: 715 DLAEAFQLFDEMKLKGLVP-DSFVYTTLVDGCCRLNDVERAITIFETNE---KGCASSSA 770
Query: 123 -YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW- 180
+N ++ K+GK EL + L +G F+++
Sbjct: 771 PFNALINWVFKFGKT-------ELTTDMINRLMDGS-------------------FDKFG 804
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + Y N +ID C+ G LE A+ L +H + V ++ L GY + +
Sbjct: 805 KPNDVTY-----NIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRR 859
Query: 241 HKAVEAMKKVLAA 253
+ +V+AA
Sbjct: 860 SEMFSVFDEVIAA 872
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V YN M+ K GN E L H M++ + TY + L+ Y + +
Sbjct: 809 VTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDE 868
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
+ A + D ++Y+ + N + K G+ KAL +L +
Sbjct: 869 VIA-AGIEPDNIMYSVIINAFLKEGMTTKALVLLDQ 903
>gi|413946863|gb|AFW79512.1| DNA-binding protein [Zea mays]
Length = 622
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 11/296 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M+DLG T +N +L L YK + +K+ ++ ME+ + +TY + A
Sbjct: 277 FNRMKDLGFPVTQFSFNQLL-LLYKRLDRKKIADVLAMMEKEDVKPSLFTYKILVDAKGS 335
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKV 119
D E ++K++ ME D ++ D AT+ Y G +KA A+LK E + I+ K
Sbjct: 336 VGDIEAMEKVIESMEKD-SIEPDLTFNATIARHYIFYGQREKAEALLKAMEGDDIQ--KN 392
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+A +L L+ G D V RIW+ + +V + + I + KL D+E AEK+FE+
Sbjct: 393 RAACKTLLPLHAFLGNSDAVERIWKACEDNTRVAESV--SAIEAFGKLGDVEKAEKVFED 450
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
++ N L+ VY + LL+K + L + L Y + +
Sbjct: 451 MLVHWKTLSSKFYNALLKVYADHNLLDKGKELAKRMDENRVRFGAPTLDALVKLYVEAGE 510
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ KA + K+ + Q + KP + LD + +GD+ +E L G+
Sbjct: 511 VEKAESLVHKL--SIQNHI--KPIYNTYMTLLDSYSKKGDVRNSEKVFNKLRQSGY 562
>gi|226530081|ref|NP_001147602.1| DNA-binding protein [Zea mays]
gi|195612448|gb|ACG28054.1| DNA-binding protein [Zea mays]
Length = 622
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 11/296 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M+DLG T +N +L L YK + +K+ ++ ME+ + +TY + A
Sbjct: 277 FNRMKDLGFPVTQFSFNQLL-LLYKRLDRKKIADVLAMMEKEDVKPSLFTYKILVDAKGS 335
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKV 119
D E ++K++ ME D ++ D AT+ Y G +KA A+LK E + I+ K
Sbjct: 336 VGDIEAMEKVIESMEKD-SIEPDLTFNATIARHYIFYGQREKAEALLKAMEGDDIQ--KN 392
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+A +L L+ G D V RIW+ + +V + + I + KL D+E AEK+FE+
Sbjct: 393 RAACKTLLPLHAFLGNSDAVERIWKACEDNTRVAESV--SAIEAFGKLGDVEKAEKVFED 450
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
++ N L+ VY + LL+K + L + L Y + +
Sbjct: 451 MLVHWKTLSSKFYNALLKVYADHNLLDKGKELAKRMDENRVRFGAPTLDALVKLYVEAGE 510
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ KA + K+ + Q + KP + LD + +GD+ +E L G+
Sbjct: 511 VEKAESLVHKL--SIQNHI--KPIYNTYMTLLDSYSKKGDVRNSEKVFNKLRQSGY 562
>gi|356503391|ref|XP_003520493.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g80270, mitochondrial-like [Glycine max]
Length = 580
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 26/293 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL L T N +L LY K + +K+ L+ ME I R++Y + +
Sbjct: 239 KMKDLDLPITVFTCNELLFLY-KRNDKKKIADLLLLMENEKIKPSRHSYSILIDTKGQSK 297
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKVNS 121
D G+D+I+ M+A + D A + Y GL DK +LK+ E E +K +
Sbjct: 298 DIGGMDQIVDRMKAQ-GIEPDINTQAVLARHYISAGLQDKVETLLKQMEGENLKQNRW-- 354
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKIFE 178
++L LY GK D+V RIW++ + N Y + ++ KL+ ++ AEK+FE
Sbjct: 355 LCRILLPLYANLGKVDEVGRIWKVCET-----NPRYDECLGAIEAWGKLNKIDEAEKVFE 409
Query: 179 ----EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+W+ ++ + L+ VY N +L K ++L+ G I +W + Y
Sbjct: 410 MMVKKWK-----LSSKTCSILLKVYANNEMLMKGKDLMKRIGDGGCRIGPLTWDTIVKLY 464
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
Q ++ KA ++K AA Q+ + KP + L+ + GDI +E
Sbjct: 465 VQTGEVEKADSVLQK--AAQQS--QMKPMFSTYLTILEQYAKRGDIHNSEKIF 513
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYA 59
M+++ D G + +++++KLY +TG EK DS++ + + + TY T L YA
Sbjct: 442 MKRIGDGGCRIGPLTWDTIVKLYVQTGEVEKADSVLQKAAQQSQMKPMFSTYLTILEQYA 501
Query: 60 DASDHEGIDKI-LTMMEAD 77
D +KI L M +AD
Sbjct: 502 KRGDIHNSEKIFLRMKQAD 520
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 154/351 (43%), Gaps = 37/351 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KM++ GL TV YN++L K E++ L+ EM E G D ++Y T ++ +
Sbjct: 185 MEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCE 244
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +E KIL M + D V Y ++ +G+ KV +D+A +L E + G +
Sbjct: 245 SGKYEEAGKILEKM-IEKKCGPDVVTYNSLMDGFCKVSKMDEAERLL----EDMVGRRCA 299
Query: 121 SAYNVILTLYGKYGKKD---DVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
TL G + + D D R+ E ++K + Y ++ L K LE A ++
Sbjct: 300 PTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHEL 359
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E + D + L++ C+ G ++ A L+ +G + ++ ++ + G+ +
Sbjct: 360 LEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCK 419
Query: 237 NSQI---HKAVEAMKKV-----LAAYQTLVK----------------WKPSVESLAACLD 272
++ HK +E MK+V + Y TL+ P S ++ L+
Sbjct: 420 AGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLE 479
Query: 273 YFKDEGDIGGAENFIELLNDKGFIPTDLQDKL----LDNVQNGKSNLETLR 319
G + A+ ++L+ +G PT L L +V+ G L+ L+
Sbjct: 480 GLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQ 530
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 109/252 (43%), Gaps = 9/252 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + G V +N+M+ + K G ++ ++ M+E T D TY T + Y
Sbjct: 395 LEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCK 454
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A+ + IL ++ D Y+++ G G +++A ++ +Q +
Sbjct: 455 ANRMQDAFAIL-------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQ-GCPPTS 506
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S Y +I+ + D+ L++ + + ++ + Y +I+ L K +E A + +
Sbjct: 507 SHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDV 566
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ D LID +C+ ++ A + G E ++ L +G+ Q+
Sbjct: 567 MLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGN 626
Query: 240 IHKAVEAMKKVL 251
+ KA+E M+ +L
Sbjct: 627 VEKAIEVMQLML 638
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 124/288 (43%), Gaps = 18/288 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y +++ + + GN + + + +EM + D T+ T L AY D +D+ L+
Sbjct: 27 YGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGD---LDRALSHFR 83
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KGAKVNSA-YNVILTLYGKY 133
+ Y + +G + +D+A +L +E I K ++A YN ++ K
Sbjct: 84 GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLL---DEMIQKDCHPDAAVYNCLIAGLCKM 140
Query: 134 GKKD---DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
GK D +VL++ V+ Y ++I + + L+ A K+ E+ + L DT
Sbjct: 141 GKIDAARNVLKMMLERSCVPDVIT--YTSLIVGCCQTNALDEARKLMEKMKESGLTPDTV 198
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N L++ C+ LE+ L+ GRE S+ + ++ + +A + ++K+
Sbjct: 199 AYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKM 258
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ K P V + + +D F + AE +E + + PT
Sbjct: 259 IEK-----KCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPT 301
>gi|115436130|ref|NP_001042823.1| Os01g0301500 [Oryza sativa Japonica Group]
gi|57899055|dbj|BAD87829.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113532354|dbj|BAF04737.1| Os01g0301500 [Oryza sativa Japonica Group]
gi|222618277|gb|EEE54409.1| hypothetical protein OsJ_01440 [Oryza sativa Japonica Group]
Length = 484
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 13/225 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M +LG+ +T + N+++ LY + G K+ +L EM+E + D T C + +
Sbjct: 175 RRMDELGIPSSTKLMNNLMGLYLELGQHSKVANLFDEMKERNVQPDELTCCILMRS---- 230
Query: 62 SDHEGIDKILTMMEADPNVAL-----DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
H +KI T+ E N++L W I+ T+G+ Y G++++A +++E +
Sbjct: 231 --HAAHNKIDTVKETFYNMSLLDVPKQWSIFRTLGSIYMNAGMVEEAELAFMRAQEFLGF 288
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVISSLLKLDDLESAE 174
+ ++ + G V R+W+ K N Y ++ L KL D + +
Sbjct: 289 DHGRHPFYFLMRQFASIGNLRGVNRVWKDIKMTFSYNRTNFSYLLMLQCLYKLGDTDRMK 348
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+I++EWE + YD R+ N L + RNG+ +AE L K +G
Sbjct: 349 EIYKEWEYRYENYDPRLTNMLTRAHLRNGMTNEAELLWEKVKERG 393
>gi|413917311|gb|AFW57243.1| hypothetical protein ZEAMMB73_018964 [Zea mays]
Length = 514
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 139/300 (46%), Gaps = 10/300 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+L L + VYN ++ L+ G + + ++ +M+ + + TY L A+
Sbjct: 169 MRKMRELSLPISPYVYNRLIILHSSPGRRKTISKILSQMKADRVVPHTSTYNILLKIQAN 228
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +G+ ++ M+ +PN + Y + + L ++ E + G
Sbjct: 229 EHNIDGLARVFNGMKRAKIEPNE----ITYGILAIAHAVARLYTVCHTYVEAIENSMTGT 284
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S ++L LYG GK+ ++ R WE+ + + + + I + K+ ++ AEKI+
Sbjct: 285 NW-STLEILLILYGYLGKEKELKRTWEIMQDLPHIRSKSFTLAIEAFGKVGSIDQAEKIW 343
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+S T N ++ VYCR+G+++KA ++ + G + + ++ +LA G ++
Sbjct: 344 IHIKSTKKLSLTEQFNSMLSVYCRHGVVDKASSVFKEMRANGCQPNAITYRHLALGCLKS 403
Query: 238 SQIHKAVEA--MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ +A+ M K + + P +E+ L+ F + GD+ A+ LN+ +
Sbjct: 404 GLVKEALNTIDMGKKEVVTKKVRSSTPWLETTHLLLENFAEIGDLENAKRLYSELNESKY 463
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 4/243 (1%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V+YN + + K G + HEM+ NG+ D TY + + A+ + +I
Sbjct: 132 VLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQ 191
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGK 132
ME + V + Y T+ GYG G D+A ++L++ ++ KG + AYN ILT GK
Sbjct: 192 MEQNRQVPCAYA-YNTMIMGYGSAGKFDEAYSLLER--QRAKGCIPSVVAYNCILTCLGK 248
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
GK D LRI+E K+ Y +I L K ++E+A K+ + + L + R
Sbjct: 249 KGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTI 308
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
N +ID C+ L++A ++ K ++ L G + ++ A +++L
Sbjct: 309 NIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLD 368
Query: 253 AYQ 255
A Q
Sbjct: 369 ADQ 371
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 138/335 (41%), Gaps = 36/335 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++ R G + V YN +L K G +K + EM+ + + + TY +
Sbjct: 224 LERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMP-NLPTYNIIIGMLCK 282
Query: 61 ASDHEGIDKIL-TMMEAD--PNV-ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
A + E K+ M EA PNV ++ +I + K LD+A ++ + + ++
Sbjct: 283 AGNVEAAFKVRDAMKEAGLFPNVRTINIMI-----DRLCKAQKLDEACSIFEGMDYKVCS 337
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEK 175
+ + ++ GK G+ DD RI+E A ++ N Y ++I + K D E K
Sbjct: 338 PD-GATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHK 396
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL----- 230
+++E D + N +D + G EK L K +G +S+ L
Sbjct: 397 MYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLV 456
Query: 231 -ATGYRQNSQIHKAVEAMKKVL--AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
A R+ +++ A++ VL AY T++ D F G + A +
Sbjct: 457 KAGFARETYELYYAMKDQGCVLDTRAYNTVI-------------DGFCKSGKVNKAYQLL 503
Query: 288 ELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY 322
E + G PT + +V +G + ++ L E Y
Sbjct: 504 EEMKTMGHHPTVVT---YGSVVDGLAKIDRLDEAY 535
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 112/270 (41%), Gaps = 43/270 (15%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G + ++ N+ + +K G EK +L E++ G D +Y + + A
Sbjct: 399 KEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKA 458
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
++ M+ D LD Y TV +G+ K G ++KA +L++ K
Sbjct: 459 GFARETYELYYAMK-DQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE-------MKTMG 510
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+ ++T Y +V+ L K+D L+ A +FEE +
Sbjct: 511 HHPTVVT----------------------------YGSVVDGLAKIDRLDEAYMLFEEAK 542
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S + + I + LID + + G +++A ++ KG +V +W L G + +I+
Sbjct: 543 SNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEIN 602
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACL 271
+A L +Q++ K + + C+
Sbjct: 603 EA-------LVCFQSMKDLKCTPNQITYCI 625
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 7/233 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ +G T V Y S++ K ++ L E + NGI ++ Y + + +
Sbjct: 503 LEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGK 562
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYA--TVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+D+ +ME L +Y + +G K +++AL +S + +K
Sbjct: 563 VGR---VDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCF-QSMKDLKCTP 618
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y +++ K K + W E+ K+ +K Y +IS L K ++ A +F
Sbjct: 619 NQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLF 678
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
E + + D+ N +I+ A L +LKG IH K+ L
Sbjct: 679 ERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVAL 731
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 109/265 (41%), Gaps = 43/265 (16%)
Query: 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH--EGIDKILTMM-------- 74
+T NF+ L+ ++ EM G YT C L A S E D +L MM
Sbjct: 3 RTRNFDYLEQILGEMSIAGFGPTNYT-CVELVASCVKSRKLIEAFD-LLQMMRHFKFRPA 60
Query: 75 ---------------EADPNVAL-----------DWVIYATVGNGYGKVGLLDKALAMLK 108
E+D +AL + + T+ + + G +D AL++L
Sbjct: 61 FSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLD 120
Query: 109 KSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKL 167
+ + A + YNV + +GK GK D + + K V ++ Y +++ L K
Sbjct: 121 EMKSNTFDADI-VLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKA 179
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+ L+ A +IFE+ E N +I Y G ++A +L+ ++ KG V ++
Sbjct: 180 NRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAY 239
Query: 228 YYLATGYRQNSQIHKAV---EAMKK 249
+ T + + KA+ E MK+
Sbjct: 240 NCILTCLGKKGKTDKALRIFEEMKR 264
>gi|218188053|gb|EEC70480.1| hypothetical protein OsI_01546 [Oryza sativa Indica Group]
Length = 484
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 13/225 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M +LG+ +T + N+++ LY + G K +L EM+E + D T C + +
Sbjct: 175 RRMDELGIPSSTKLMNNLMGLYLELGQHSKAANLFDEMKERNVQPDELTCCILMRS---- 230
Query: 62 SDHEGIDKILTMMEADPNVAL-----DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
H +KI T+ E N++L W I+ T+G+ Y G++++A +++E +
Sbjct: 231 --HAAHNKIDTVKETFYNMSLLDVPKQWSIFRTLGSIYMNAGMVEEAELAFMRAQEFLGF 288
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVISSLLKLDDLESAE 174
+ ++ + G V R+W+ K N Y ++ L KL D + +
Sbjct: 289 DHGRHPFYFLMRQFASIGSLRGVNRVWKDIKMTFSYNRTNFSYLLMLQCLYKLGDTDRMK 348
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+I++EWE + YD R+ N L + RNG+ +AE L K +G
Sbjct: 349 EIYKEWEYRYENYDPRLTNMLTRAHLRNGMTNEAELLWEKVKERG 393
>gi|414586983|tpg|DAA37554.1| TPA: hypothetical protein ZEAMMB73_139718 [Zea mays]
Length = 423
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 18/223 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D L +VYN M+ LY G K++++ E++ ++ D +TY R SA A
Sbjct: 178 FERMKDASLPMDALVYNEMMTLYISVGELGKVEAVAEELKRQNVSPDLFTYNLRASAAAA 237
Query: 61 ASDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ D EG +L M DP + + W +Y + + Y G L L + + A+
Sbjct: 238 SMDLEGFRAVLDEMSRDPKSSTEGGWALYRDLASVYVDAGQL---LGSVNSPPVEAGEAR 294
Query: 119 VNS----AYNVILTLYGKYGKKDDVLRIWE--------LYKKAVKVLNNGYRNVISSLLK 166
++ Y+ ++ L+ G+ + + IW ++ ++ + Y V+SS L
Sbjct: 295 ISQREWITYDFLVILHAGLGRPERIRDIWRSMVATSQSQSQQQQRMTSRNYVCVVSSYLA 354
Query: 167 LDDLESAEKIFEEWE-SQALCYDTRIPNFLIDVYCRNGLLEKA 208
LE A ++ ++W+ S+A +D N L+D R GL + A
Sbjct: 355 CGRLEDAGEVVDQWQRSKAPEFDVSACNRLLDALLRAGLADAA 397
>gi|326504724|dbj|BAK06653.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523789|dbj|BAJ93065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 419
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M+D L +VYN M+ LY G +K+ L E++ ++ D +TY R+SA
Sbjct: 189 FQRMKDADLPIDVLVYNEMMTLYISVGELDKVPILAEELKRQNVSPDLFTYNLRISASVA 248
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D E IL M DPN W++Y + + Y L + L ++E +I +
Sbjct: 249 SMDLEAFKGILDEMSKDPNSNEGWMLYRNLASIYVDASQLVSSGNSLVEAEAKISQREWI 308
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y++++ L+ G D V IW+ + A ++ + Y V+S+ L L+ A ++ ++
Sbjct: 309 T-YDLLVILHAGLGNLDRVKDIWKSMQMTAQRMTSRNYVCVLSAYLMCGQLKDAAEVVDQ 367
Query: 180 WE-SQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W+ S+ +D N L D G + A++
Sbjct: 368 WQRSKVPEFDVSACNRLFDALLAAGFTDTADSF 400
>gi|449437992|ref|XP_004136774.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 604
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 17/298 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL T ++ ML LY + KL ++ ME+ + +TY + A +
Sbjct: 262 KMKDLEFPMTPFAHDQMLILYKRIDK-RKLADILSLMEKENVKPSPFTYKILIDAKGLCN 320
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVNS 121
D G+++++ M+A+ + D + + Y GL DKA +LK EE KG+++
Sbjct: 321 DISGMEQVVDSMKAE-GIKPDVSTLSLLAKHYVSNGLKDKAKVILKDMEENNSKGSRLPC 379
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKIFE 178
++L LYG +D+V R+W++ + N +++++ KL +++ AEKIF+
Sbjct: 380 --RILLPLYGALQMEDEVRRLWKICEA-----NPHMEESMAAIVAWGKLKNVQEAEKIFD 432
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ TR N +++VY + +L K + LVN G + +W + Y +
Sbjct: 433 RFVKTWKKPSTRHYNTMMNVYGGSKMLTKGKELVNQMAESGCRMDELTWDAVVKLYVEAG 492
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ KA + K A Q K KP + +D + GD+ E ++ G++
Sbjct: 493 EVEKADSFLVK--AVLQN--KKKPMFTTYITLMDRYASRGDVPNVEKNFAMMRRLGYV 546
>gi|224072985|ref|XP_002303946.1| predicted protein [Populus trichocarpa]
gi|222841378|gb|EEE78925.1| predicted protein [Populus trichocarpa]
Length = 451
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 146/327 (44%), Gaps = 23/327 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KMRDLGL T M+ + YK +K+ +++ M++ I TY + A
Sbjct: 106 FRKMRDLGLPITVEACEQMI-IIYKRLEKKKIPNILLMMKDQNIKPSFLTYKLLIDAKCQ 164
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G++K++ M + + LD A + Y VGL DKA +LK+ E++ +
Sbjct: 165 FNDTTGMEKLVEAMR-NEGMELDVFALAVIARHYISVGLKDKADLILKQIEKRKQKGGGL 223
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI---- 176
A +L+LY G D+V RIW+ K K + I + KL +E AE +
Sbjct: 224 GARRSLLSLYASLGNADEVGRIWKECKADPK--QSECIAAIRAWGKLGKVEEAEAVSEMM 281
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ W++ Y T L++VY N L K ++LV G +W L Y +
Sbjct: 282 LQTWKNPTFGYYTS----LLNVYIDNNLTSKGKDLVEQMGDIGSWAGPLTWDALVRLYIK 337
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG-- 294
+ + KA + KV + + +P + A ++++ GDI E + + + G
Sbjct: 338 SGDVEKAHSILLKV----ARMKRKRPLYTTCIAVMEHYAKRGDIHNTEKLFQSMRELGYT 393
Query: 295 --FIPTDLQDKLLDNVQNGKSNLETLR 319
F P ++ L+D N K+ + LR
Sbjct: 394 ARFKPFEI---LVDAYINAKTPIYGLR 417
>gi|414877074|tpg|DAA54205.1| TPA: hypothetical protein ZEAMMB73_351899 [Zea mays]
Length = 613
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 19/300 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M+DLG TT N +L L YK + +K+ ++ ME+ + +TY + A
Sbjct: 268 FNRMKDLGFPVTTFSSNQLL-LLYKRLDKKKIADVLTMMEKEDVKPSIFTYKVLVDAKGM 326
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKV 119
D E ++K++ M D + D AT+ Y G DKA +L+ E + I+ K
Sbjct: 327 VGDVEAMEKVVESMVKD-GIEPDLTFNATIARQYIFNGQRDKAETLLESMEGDDIQ--KN 383
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+A +L LY G D V RIW++ + ++ + + I + KL ++E AEK+FE+
Sbjct: 384 RAACKFLLPLYAFLGNGDAVERIWKVCEDNTRI--DECLSAIDAFGKLGNVEKAEKVFED 441
Query: 180 ----WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
W++ + Y T L+ VY LL+K E L +G + + L Y
Sbjct: 442 MFVKWKNLSSKYYTA----LLKVYANQNLLDKGEELAKRMDEEGAKFGTPTLNALVKLYA 497
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ KA + K+ KPS S LD + +GD+ +E L G+
Sbjct: 498 DAGEVEKAESLLHKLSLKNNV----KPSYSSYMTLLDSYSKKGDVHNSEKVFNKLRQIGY 553
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 149/328 (45%), Gaps = 19/328 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D + N+M+ Y K GN + + + ++ + G++ D +TY + + Y
Sbjct: 194 EMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNK 253
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + + I M PN + V Y + +G+ + +D+AL + + E V
Sbjct: 254 NVDAANAIFLSM---PNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVR 310
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y VI+ + G+K + L ++ E+ +K + + Y +I SL + + + A+KI
Sbjct: 311 T-YTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNG 369
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L N LID YC+ GL A +++ + + +++ L G+ +
Sbjct: 370 MLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKN 429
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
IHKA+ + K+L K +P+V + + EGD+G A + L+N+ G +P +
Sbjct: 430 IHKAMSLLHKMLER-----KLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDE 484
Query: 300 -----LQDKLLDN--VQNGKSNLETLRE 320
D L V+ +S E+L+E
Sbjct: 485 WTYSVFIDTLCKRGLVEEARSLFESLKE 512
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 115/262 (43%), Gaps = 25/262 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + L V YN ++ K G+ L+ M E+G+ D +TY S + D
Sbjct: 437 LHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTY----SVFID 492
Query: 61 ASDHEG-IDKILTMMEA--DPNVALDWVIYATVGNGYGKVG-------LLDKALAMLKKS 110
G +++ ++ E+ + + + VIY+T+ +GY KVG LLDK L+
Sbjct: 493 TLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLS----- 547
Query: 111 EEQIKGAKVNS-AYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD 168
G NS YN ++ Y K K+ L + + K+ ++ + Y +I +LLK D
Sbjct: 548 ----AGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDD 603
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
+ + A +F++ S D I I YC +G L+ AE L+ KG +
Sbjct: 604 EFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYT 663
Query: 229 YLATGYRQNSQIHKAVEAMKKV 250
Y + I A +K++
Sbjct: 664 LFIDAYGRFGSIDGAFGILKRM 685
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 19/248 (7%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
TV+ ++ +L KT E L+ + EM E + +TY + + + S+ + KIL
Sbjct: 313 TVIIFALCQLGRKT---EALN-MFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILN 368
Query: 73 -MMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129
M+E P+V V Y + +GY K GL AL +L E + +IL
Sbjct: 369 GMLEKGLIPSV----VTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELIL-- 422
Query: 130 YGKYGKKDDVLRIWELYKKAV--KVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ + ++ + L K + K+ N Y +I K DL SA K+ L
Sbjct: 423 --GFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGL 480
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D + ID C+ GL+E+A +L K KG + + + L GY + ++
Sbjct: 481 VPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRF 540
Query: 246 AMKKVLAA 253
+ K+L+A
Sbjct: 541 LLDKMLSA 548
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 102/284 (35%), Gaps = 32/284 (11%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
RD+ A T Y ++ K F++ + +M G D + Y + AY
Sbjct: 583 RDIEPAADT--YTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRL 640
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ + ++ M A + D ++Y + YG+ G +D A +LK+ E G + +
Sbjct: 641 KDAEVLICKMNAK-GIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEV--GCEPSYYTY 697
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
L + K +V EL + V +N + N + D E +F +
Sbjct: 698 SCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRV----DYEFTLDLFGKMAEHG 753
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ I C+ G LE A L +H K KG+ N I+ ++
Sbjct: 754 CAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQS--------------PNEDIYNSL 799
Query: 245 EAMKKVLAAYQTLVKW---------KPSVESLAACLDYFKDEGD 279
L Y ++W P ++S L DEG+
Sbjct: 800 LGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGN 843
>gi|326520694|dbj|BAJ92710.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 419
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M+D L +VYN M+ LY G +K+ L E++ ++ D +TY R+SA
Sbjct: 189 FQRMKDADLPIDVLVYNEMMTLYISVGELDKVPILAEELKRQNVSPDLFTYNLRISASVA 248
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D E IL M DPN W++Y + + Y L + L ++E +I +
Sbjct: 249 SMDLEAFKGILDEMSKDPNSNEGWMLYRNLASIYVDASQLVSSGNSLVEAEAKISQREWI 308
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y++++ L+ G D V IW+ + A ++ + Y V+S+ L L+ A + ++
Sbjct: 309 T-YDLLVILHAGLGNLDRVKDIWKSMQMTAQRMTSRNYVCVLSAYLMCGQLKDAAGVVDQ 367
Query: 180 WE-SQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W+ S+ +D N L D G + A++
Sbjct: 368 WQRSKVPEFDVSACNRLFDALLAAGFTDTADSF 400
>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g32630-like [Glycine max]
Length = 619
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 145/298 (48%), Gaps = 22/298 (7%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D+G+ T+V + + + G + LM+EM G+ +TY T L+A D E
Sbjct: 179 DIGVQSLTIVVDVLCR----RGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDRE 234
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
G+D+IL +ME + VA V Y + Y + +A +K E++ V V
Sbjct: 235 GVDEILGLMEREGVVA-SLVTYTILIEWYASSERIGEA----EKVYEEMCERNVEMDVYV 289
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAV--KVLNNG--YRNVISSLLKLDDLESAEKIFEEWE 181
++ + +V R L+ + + ++ N + +IS + K +E+AE + EE +
Sbjct: 290 YTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQ 349
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + + I N ++D YC+ G++++A L + + KG E V ++ LA+G ++H
Sbjct: 350 CKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGL---CKLH 406
Query: 242 KAVEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ EA K+VL +V+ P+V + A ++ + EG++ E F+ + +G +P
Sbjct: 407 RYEEA-KRVL---NVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVP 460
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 5/182 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ G+ V++N+M+ Y K G ++ L ME G D +TY S
Sbjct: 345 LEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCK 404
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+E ++L +M + VA + V AT Y + G L + L+ E+ +G N
Sbjct: 405 LHRYEEAKRVLNVM-VEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEK--RGVVPN 461
Query: 121 -SAYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN ++ Y K K + E+ +K + Y ++I +D ++ A K+F
Sbjct: 462 IVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFN 521
Query: 179 EW 180
E
Sbjct: 522 EM 523
>gi|449506007|ref|XP_004162627.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 610
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 149/337 (44%), Gaps = 16/337 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K++DL + YN ML LY K + D L+ ME+ I +TY + ++
Sbjct: 268 KIKDLEFPMSIFAYNQMLVLYKKIDRRKIADVLLL-MEKENIKPCPFTYKILIDGKGLSN 326
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++++ M+A+ + LD + + Y GL KA A+LK+ EE
Sbjct: 327 DISGMEQVVDSMKAE-GIELDVSTLSLLAKHYVSCGLKVKAKAILKEIEETNSNGP-QWL 384
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKIFEE 179
++L YGK +D+V R+WE+ + N +++++ +L +++ AEKIF+
Sbjct: 385 CRILLPFYGKLQMEDEVRRLWEICEA-----NPHIEECMAAIVAWGQLKNVQEAEKIFDR 439
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
R + +++VY + +L K + +VN G I + + + Y + +
Sbjct: 440 VVKTWKKLSARHYSIMMNVYRDSKMLTKGKEVVNQMAESGCHIDLLTCNAIVKLYVEAGE 499
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA + K + Y KP S +D++ GD+ AE + + +IP
Sbjct: 500 VEKADSFLVKAVKKYGM----KPLFTSYKTLMDHYARRGDVHNAEKIFDKMRQSSYIPRL 555
Query: 300 LQ-DKLLDNVQNGKSNLETLRELYGNSLAGNEETLSG 335
Q L+ N K+ +RE +TL+G
Sbjct: 556 GQFGTLIQAYVNAKTPAYGMRERMMADKVFPNKTLAG 592
>gi|224141193|ref|XP_002323959.1| predicted protein [Populus trichocarpa]
gi|222866961|gb|EEF04092.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 109/215 (50%), Gaps = 6/215 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++++ L T ++YN M+ LY G EK+ ++ E++ + D +TY +S+ A A
Sbjct: 133 KRIKGSNLPFTALMYNEMMTLYMSVGQLEKVSQVVEELKHQKVAPDIFTYNLWISSCAAA 192
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL---DKALAMLKKSEEQIKGAK 118
+ + + +IL M D V DW+ Y + N Y G L + + A + ++E++I +
Sbjct: 193 LNIDKVRRILDEMSQDSGVNDDWMRYIKIVNIYVTAGHLVNAESSTAAVVEAEKKITQRE 252
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ Y+ ++ LY GKKD + +IW+ L K+ + + ++SS L L L+ +I
Sbjct: 253 WIT-YDFLVILYAGLGKKDKIDQIWKSLRMTNQKMTSRNFVCILSSYLMLGHLKEVGEIV 311
Query: 178 EEW-ESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
++W +S +D N L+D GL E A N
Sbjct: 312 DQWKQSTTTDFDISACNRLLDAISCLGLTEIANNF 346
>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 559
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 5/251 (1%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE---NGITYDRYTYCTRLSAYAD 60
MR+ GL VVY S++ K G+ ++ EM+ +G+ +R TY + +Y
Sbjct: 159 MREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQ 218
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++ ++ M ADP + LD ++ V + + G +DKAL S G
Sbjct: 219 QQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAF-DSIAATGGQPSL 277
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
A+ IL + G G+ D++LR + K+ VK Y +I++ K ++ S F+
Sbjct: 278 HAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKA 337
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ D + N LID + + G +AE K +G + + + L Y + Q
Sbjct: 338 MRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTIASLMDAYTRADQ 397
Query: 240 IHKAVEAMKKV 250
K + + ++
Sbjct: 398 FEKVLRLISRM 408
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/381 (19%), Positives = 147/381 (38%), Gaps = 61/381 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEME-ENGITYDRYTYCTRLSAYA 59
MQ+ G+ YN+M+ Y + +K+++L+ M + G+ D +T+ ++A++
Sbjct: 194 MQRSSGDGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWS 253
Query: 60 DASDHEGIDKILTMMEA------DPN-------------------------------VAL 82
A +DK L ++ P+ V
Sbjct: 254 RAGR---VDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKP 310
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI 142
+Y T+ N +GK + + K A V + YN ++ + K GK + +
Sbjct: 311 STAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKT-YNTLIDTWAKTGKAVEAEKF 369
Query: 143 WELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
+ L K+ ++ +++ + + D E ++ + + D + N LID Y R
Sbjct: 370 YVLMKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGR 429
Query: 202 NGLLEKAEN-LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260
G E+AE L K G + ++ + + +N + KA E + ++ Y T
Sbjct: 430 MGKPEEAEKVLCGAMKEYGIALETNNFTSVIEAWARNGNLDKAEEWLHRMNTDYAT---- 485
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRE 320
KP +++L L + D+ I ++ Q KL Q K ET+R+
Sbjct: 486 KPDIKTLTTLLSFCIPAADVKRGRRVIHMIE---------QHKL----QKDKQARETIRQ 532
Query: 321 LYGNSLAGNEETLSGPEGDTS 341
+ + ++E + P ++
Sbjct: 533 FHAATKRPDQEKKNQPTSPST 553
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 98/215 (45%), Gaps = 20/215 (9%)
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144
++ + GYG+ G + LA +++ ++ S Y +++ +GK G D+ R+W+
Sbjct: 99 AVFDVLLQGYGRAGDRQR-LAQVQRDMREVGVRPGMSTYTILIDAWGKAG---DLRRMWQ 154
Query: 145 LY----KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA---LCYDTRIPNFLID 197
+ ++ ++ Y +VI++L KL D+ + E+ F E + + + + N ++
Sbjct: 155 AWEDMREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVH 214
Query: 198 VYCRNGLLEKAENLVNHEKL-KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQT 256
Y + +++K E LV + G + + + + + ++ KA+EA + A
Sbjct: 215 SYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAA---- 270
Query: 257 LVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+PS+ + A L G G ++ + L+
Sbjct: 271 -TGGQPSLHAWTAILHML---GTAGRSDEMLRTLD 301
>gi|15220095|ref|NP_178143.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42572199|ref|NP_974190.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|145327755|ref|NP_001077853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262222|sp|Q9C977.1|PP135_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g80270, mitochondrial; Flags: Precursor
gi|12324975|gb|AAG52431.1|AC018848_2 hypothetical protein; 8785-10851 [Arabidopsis thaliana]
gi|17064898|gb|AAL32603.1| Unknown protein [Arabidopsis thaliana]
gi|20259918|gb|AAM13306.1| unknown protein [Arabidopsis thaliana]
gi|332198258|gb|AEE36379.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332198259|gb|AEE36380.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332198260|gb|AEE36381.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 9/293 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG + + ML L +K + +K+ ++ ME+ I TY + +
Sbjct: 254 KMKDLGFPLSGFTCDQML-LLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATN 312
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++IL M+ D V LD+ A Y GL DKA +LK+ E + A A
Sbjct: 313 DISGMEQILETMK-DEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEAN-RRA 370
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ +L++Y G++D+V RIW++ + K I + KL+ ++ AE IFE+
Sbjct: 371 FKDLLSIYASLGREDEVKRIWKICES--KPYFEESLAAIQAFGKLNKVQEAEAIFEKIVK 428
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + L+ VY + +L K ++LV G I +W L Y + ++ K
Sbjct: 429 MDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEK 488
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
A + K T K + S +D + GD+ E + + G+
Sbjct: 489 ADSLLDKASKQSHT----KLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGY 537
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 135/301 (44%), Gaps = 14/301 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M++ G+ V YN+++ + K G+ + +L+ EM+ NG D TY ++
Sbjct: 242 LDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIK 301
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
AS + ++L ME + D + Y T+ NG GK GLL+ A + + + + V
Sbjct: 302 ASQLDEACQVLKKMEKE-GCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVV 360
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++T GK + + ++ E+ ++ Y ++I+ L K ++ A+++F E
Sbjct: 361 T-YSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSE 419
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L D N ++ R G ++A + K G V ++ L G + +
Sbjct: 420 MRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKE 479
Query: 240 IHKAVEAMKKVL---AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ A +K+++ A+ +L CL+ G++ A ++ N KG
Sbjct: 480 VDDACGLLKELIEQGCAFDSL--------KFDECLEILTSWGNVDEAHELLQFANSKGLW 531
Query: 297 P 297
P
Sbjct: 532 P 532
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 127/297 (42%), Gaps = 10/297 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR+ G T YNS++ K G +K L+ EME +G D TY + ++
Sbjct: 139 EMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDG 198
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVNS 121
+ K+ M+ D + + + + GK G +D AL +L + +E+ +K V
Sbjct: 199 ETVKAFKLFQEMKRRGRKP-DSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVT- 256
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ +GK G + + E+ + K Y +I+ L+K L+ A ++ ++
Sbjct: 257 -YNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKM 315
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E + DT N LI+ + GLL A L + K KG V ++ L T + +++
Sbjct: 316 EKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARV 375
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A VL V +P + + + + G + A+ + KG P
Sbjct: 376 ESAC-----VLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSP 427
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 3/237 (1%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
YN+++ K G F++ L+ EM +NG D TY +S A + M
Sbjct: 81 TYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEM 140
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
V D Y ++ G GKVG KA+ +L++ E V + Y+ ++T GK G
Sbjct: 141 RERGCVP-DTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMT-YSSLITGLGKDG 198
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ +++ E+ ++ K + + ++ +L K ++ A ++ +E + + + N
Sbjct: 199 ETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYN 258
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
LI + + G L +A NL++ K G + V ++ L TG + SQ+ +A + +KK+
Sbjct: 259 ALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKM 315
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 124/289 (42%), Gaps = 14/289 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V YNS+L K G E+ L E++ T D +Y +++ A E +++
Sbjct: 9 VVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVA 68
Query: 73 MMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129
M+A PN+ W Y T+ + GK G D+AL +L + + V + YN +++
Sbjct: 69 EMQAKGCKPNL---WT-YNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRT-YNCLIST 123
Query: 130 YGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
GK G+ + ++ E+ ++ Y ++I L K+ + A ++ EE E D
Sbjct: 124 LGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPD 183
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ LI ++G KA L K +GR+ ++ L + ++ A+E +
Sbjct: 184 VMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLD 243
Query: 249 KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ KP V + A + F GD+ A N ++ + G P
Sbjct: 244 EMKER-----GVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKP 287
>gi|356525847|ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Glycine max]
Length = 395
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 4/213 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q+++D L+ + YN M+ LY G FEK+ S++ E+++ ++ D +TY +S A
Sbjct: 170 QRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPSVVEELKQQKVSPDIFTYNLWISYCAAI 229
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA-MLKKSEEQIKGAKVN 120
+ + + +IL M W+ Y + N Y VG LD A + L ++E++I +
Sbjct: 230 LNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVGHLDNASSNTLVETEKRITQRQWI 289
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++ LYG G KD + +IW L K+++ Y +ISS L L + ++ ++
Sbjct: 290 T-YDFLIILYGGLGSKDKLDQIWNSLRMTKQKMISRNYICIISSYLMLGHTKEVGEVIDQ 348
Query: 180 W-ESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W +S +D ++ + GL E A NL
Sbjct: 349 WKQSTTTDFDMLACKKIMVAFRDMGLAEIANNL 381
>gi|357163843|ref|XP_003579864.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Brachypodium distachyon]
Length = 422
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D L+ +VYN M+ LY G +K+ ++ E++ ++ D +TY R+SA A
Sbjct: 192 FERMKDADLSIDVLVYNEMMTLYISVGELDKVPAVAEELKRQNVSPDLFTYNLRISASAA 251
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D E IL M DPN W +Y + Y L + L ++E +I +
Sbjct: 252 SMDLEIFKGILDEMSKDPNSNEGWTLYRNLATIYVNASQLVSSGNSLVEAEAKISQREWI 311
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++ L+ G + V IW+ + + ++ + Y V+SS L L+ A++I ++
Sbjct: 312 T-YDFLILLHTGLGNLERVKDIWKSMQMTSQRMTSRNYICVLSSYLMCGQLKDAKEIVDQ 370
Query: 180 WE-SQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W+ S+A +D N L D G + A++
Sbjct: 371 WQRSKAPEFDISACNRLFDALLGAGFTDTADSF 403
>gi|125602283|gb|EAZ41608.1| hypothetical protein OsJ_26140 [Oryza sativa Japonica Group]
Length = 524
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 139/299 (46%), Gaps = 10/299 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KMR+L L + VYN ++ L+ G + + ++ +M+ + +T TY L A+
Sbjct: 173 RKMRELSLPISPYVYNRLIILHSSPGRQKTISKILAQMKGDRVTPHTSTYNILLKIKANE 232
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ +G+ ++ M+ +PN + Y + + L + ++ E + G
Sbjct: 233 HNIDGVARVFNDMKRAKVEPNE----ITYGILAIAHAVARLYTVSHTYVEAIENSMTGTN 288
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S ++L LYG +GK ++ W+L + + + I + K+ ++ AE+I+
Sbjct: 289 W-STLEILLILYGYHGKAKELKMTWDLMQGLPHIRPKSFILAIEAFGKVGSIDQAEEIWG 347
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
++ES T N ++ VYCR+GL++KA + + G + + ++ +L G +
Sbjct: 348 KFESTRKPKLTEQFNSILSVYCRHGLVDKASAVFKEMRANGCQPNAITYRHLTLGCLKAG 407
Query: 239 QIHKAVEAM--KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ +A++ M K + + P +E+ L+ F + GD+ A+ + LN+ +
Sbjct: 408 IVKEALKTMDIAKKEVVTKKVKSSTPWLETTHMILESFAENGDLVNAKRVFDELNESKY 466
>gi|449506011|ref|XP_004162628.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 613
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 145/323 (44%), Gaps = 17/323 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL T N +L LY +T + D L+ ME+ + R+TY + ++
Sbjct: 270 KMKDLEFPITAFACNQLLLLYKRTDKRKVADILLL-MEKENVKPSRFTYRILIDTKGLSN 328
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++++ M+A+ + LD + + Y GL DKA A+LK+ EE I
Sbjct: 329 DITGMEQVVDTMKAE-GIELDVSTLSVLAKHYISGGLKDKAKAILKEMEE-INSEGSRWP 386
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKIFEE 179
++L LYG+ +D+V R+WE+ N +++++ KL +++ AEKIF+
Sbjct: 387 CRILLPLYGELQMEDEVRRLWEICGS-----NPHIEECMAAIVAWGKLKNIQEAEKIFDR 441
Query: 180 WESQALCYDTRIPNFLIDVYCRNG-LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
R + +++VY + +L K + +V G + + + Y +
Sbjct: 442 VVKTGEKLSARHYSTMLNVYREDSKMLTKGKEVVKQMAESGSRMDPVTLDAVVKLYVEAG 501
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++ KA + K + Y K KP + +D + GD+ AE ++ G++
Sbjct: 502 EVEKADSFLVKTVLQY----KKKPMFTTYITLMDRYASRGDVPNAEKIFGMMRKYGYVGR 557
Query: 299 DLQ-DKLLDNVQNGKSNLETLRE 320
Q L+ N K+ +RE
Sbjct: 558 LSQFQTLIQAYVNAKAPAYGMRE 580
>gi|357509403|ref|XP_003624990.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500005|gb|AES81208.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 623
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 20/299 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL T N +L LY +T +K+ ++ ME+ + T+ + ++
Sbjct: 282 KMKDLEFPLTPFACNQLLLLYKRTDK-KKIADVLLLMEQENVKPSPLTFKILIDVKGQSN 340
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKVNS 121
D +G+D+I+ M A+ + D A + Y G DKA +LK+ E E +K +
Sbjct: 341 DIDGMDQIVDQMRAE-GIEPDNYTKAVLVGHYISGGHDDKAKMLLKEMEGENLKENRW-- 397
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE--- 178
++L LY K G D+V R+W++ + V I + KL ++ AE +FE
Sbjct: 398 VCRLLLALYAKLGMADEVGRVWKVCETRPSV--EDCVAAIEAWGKLKKIDEAEAVFEVMA 455
Query: 179 -EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+W+ ++ + L++VY N +L K ++L+ KG I +W L Y Q
Sbjct: 456 RKWK-----LTSKNCSVLLNVYANNKMLTKGKDLIKRMAHKGCRIGPLTWNALVKLYVQA 510
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ KA ++K A Q+ V +P S L+ + GDI +E + G+I
Sbjct: 511 GEVEKADSVLQK--AIQQSPV--RPIFSSYNTLLEEYSKRGDIHNSEKIFYRMKQAGYI 565
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 32/314 (10%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V+YN + + K GN + HE++ G+ D +Y + + A +++
Sbjct: 116 VLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQ 175
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
MEA+ +V + Y T+ GYG G + A +L++ E+ V S +N ILT GK
Sbjct: 176 MEAERSVPCAYA-YNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS-FNSILTCLGKK 233
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
K D+ L ++E+ KK + ++ Y +I L +E A +I +E E +L + N
Sbjct: 234 RKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 293
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
++D C+ LE+A + +G ++ L G + Q+ +A +K+L A
Sbjct: 294 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 353
Query: 254 --------YQTLVK----------------------WKPSVESLAACLDYFKDEGDIGGA 283
Y +L++ KP + L +D G++
Sbjct: 354 GHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 413
Query: 284 ENFIELLNDKGFIP 297
E + GF+P
Sbjct: 414 RMIFEDIRSYGFLP 427
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 18/266 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM D G VVY S+++ ++ G E + E+ G D T L+ Y D
Sbjct: 347 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDL----TLLNTYMD 402
Query: 61 ASDHEG-IDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
G ++K + E + D Y+ + +G K G + + ++Q G
Sbjct: 403 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQ--GF 460
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+++ AYN ++ + K GK I E + +K V+ Y ++ L K+D L+ A
Sbjct: 461 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 520
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+FEE +S+ + + + + LID + + G +++A ++ KG +V +W L
Sbjct: 521 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 580
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWK 261
+ +I++A L +Q++ + K
Sbjct: 581 KAEEINEA-------LVCFQSMKEMK 599
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 141/331 (42%), Gaps = 40/331 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ L V+YN + + K G + HE++ +G+ D TY + +
Sbjct: 256 LDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCK 315
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + +I ME + NV + Y T+ GYG G D+A ++L++ ++ +G +
Sbjct: 316 GNRLDEAVEIFEQMEQNRNVPCAYA-YNTMIMGYGSAGKFDEAYSLLER--QKARGCIPS 372
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN ILT GK G+ + LR +E KK + Y +I L K ++E+A K+ +
Sbjct: 373 VIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDA 432
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENL---VNHEKLKGREIHVKSWYYLATGYRQ 236
+ L + N +ID C+ L++A ++ +NH+ E+ ++ L G +
Sbjct: 433 MKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEV---TFCSLIDGLGK 489
Query: 237 NSQIHKAVEAMKKVL--------AAYQTLVK----------------------WKPSVES 266
++ A +++L Y +L+K P +
Sbjct: 490 QGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRL 549
Query: 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
L A +D G+ G E + +GFIP
Sbjct: 550 LNAYMDCVFKAGETGKGRALFEEIKSRGFIP 580
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 50/282 (17%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G T YN+ + + K+G K L+ EM+ G TY + + A
Sbjct: 608 MKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAK--- 664
Query: 64 HEGIDKI----LTMMEADPN-VALDWVIYATVGNGYGKVGLLDKA--------------- 103
ID++ + EA N + L+ VIY+++ +G+GKVG +D+A
Sbjct: 665 ---IDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 721
Query: 104 -------LAMLKKSEE------------QIKGAKVNSAYNVILTLYGKYGKKDDVLRIW- 143
L L K+EE +KG + Y++++ + K + W
Sbjct: 722 VYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQ 781
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID--VYCR 201
E+ K+ +K Y +I+ L K ++ A +FE +++ D+ N +I+ Y R
Sbjct: 782 EMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSR 841
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ +A + ++KG IH K+ L +++ + +A
Sbjct: 842 RAM--EAYKIFEETRMKGCNIHTKTCIALLDALQKDECLEQA 881
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 11/248 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M D VVY S++K ++K G E + EM G + D L+AY D
Sbjct: 501 EQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRL----LNAYMDC 556
Query: 62 ---SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ G + L D + Y+ + +G K G + + +EQ G
Sbjct: 557 VFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQ--GCV 614
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+++ AYN + + K GK + ++ E K K + Y +VI L K+D L+ A +
Sbjct: 615 LDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYML 674
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FEE +S L + I + LID + + G +++A ++ KG +V +W L +
Sbjct: 675 FEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 734
Query: 237 NSQIHKAV 244
+I++A+
Sbjct: 735 AEEINEAL 742
>gi|297842839|ref|XP_002889301.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp.
lyrata]
gi|297335142|gb|EFH65560.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp.
lyrata]
Length = 597
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 9/293 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+DLG + + ML L YK + +K+ ++ ME+ + TY + +
Sbjct: 255 RMKDLGFPLSGFTCDQML-LLYKRIDRKKIADVLLLMEKENVKPSLLTYKILIDVKGATN 313
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++IL M+ D V D+ A Y GL +KA +LK+ E + A A
Sbjct: 314 DISGMEQILETMK-DEGVQPDFQTQALTAKHYSGAGLKEKAEKVLKEMEGESLEAN-RRA 371
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ +L++Y G++D+V RIW++ + K + I + KL+ ++ AE IFE+ +
Sbjct: 372 FKDLLSIYASLGREDEVTRIWKICES--KPYFDESLAAIHAFGKLNKVQEAEAIFEKIVT 429
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + L+ VY + +L K ++LV G I +W L Y + ++ K
Sbjct: 430 MGRRASSNTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEK 489
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
A + K T K + S +D + GD+ E + + G+
Sbjct: 490 ADSMLDKASKQSHT----KLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREVGY 538
>gi|357139769|ref|XP_003571450.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
mitochondrial-like [Brachypodium distachyon]
Length = 517
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+L L + VYN ++ L+ G + + ++ +M+ + +T TY L A+
Sbjct: 172 MRKMRELSLPISPYVYNRLIILHSSEGRRKTIPKILAQMKASKVTPHTSTYNILLKIQAN 231
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +G+ ++ M+ V + + Y + + L + ++ + + G
Sbjct: 232 EHNIDGVARVFNDMK-RAKVEPNEITYGILAISHAVARLYTVSQTYIEAIKNSMTGTNW- 289
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S ++L LYG GK+ ++ W+L + + + + I + K+ +E AE+I+ E
Sbjct: 290 STQEILLILYGYLGKEKELKMTWKLMQVLPHIRSKSFTLAIEAFGKIGSIEQAEEIWGEI 349
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+S T N ++ VYCR+G+++KA + + G + + ++ +LA G + +
Sbjct: 350 KSARKLRLTEQFNSMLSVYCRHGVVDKASAVFKEMRASGCQPNAITYRHLALGCLKAGLV 409
Query: 241 HKAVEAM----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+A+ M K+V+ + + P +E+ L+ F + GD+ A+ LN+ +
Sbjct: 410 KQALNTMDMGKKEVVT--RKVRNSTPWLETTHMLLENFAEIGDLENAKIVYAELNESKY 466
>gi|255584236|ref|XP_002532856.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527393|gb|EEF29534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 146/299 (48%), Gaps = 16/299 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+LG + +++N ++ L+ G + + ++ +M+ + + TY + A+
Sbjct: 176 MKKMRELGHPISHLIFNRLIILHSSPGRRKMIPKILTQMKADKVVRHVSTYNILMKIEAN 235
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ EG+ K+ M E +PN V + + + L A A ++ E+ G
Sbjct: 236 EHNVEGLIKVFGEMKRLEVEPNE----VSFCILAIAHAVARLYTVAEAYVEAVEKSYTGD 291
Query: 118 KVNSAYNVILTLYG--KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
S +V++ LYG + GKK D RIW K+ V + Y I + ++ L AE+
Sbjct: 292 NW-STLDVLIILYGYLRKGKKLD--RIWGTVKELPHVRSKSYILAIEAFGRIGQLGRAEE 348
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
++ E +S T N ++ +YC+ GL++KA ++ G + + ++ +LA G
Sbjct: 349 LWLEMKSLKGLKSTEQFNSMLSIYCKCGLVKKATDIFREMDRNGCKPNAITFRHLALGCL 408
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWK---PSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ + +A++ ++ + + T K K P +E+ + ++ F ++GD+ AE F E L+
Sbjct: 409 KAELVEEALKTLEMGM-DFTTSNKIKNSIPWLETTFSIVEIFAEKGDVANAEKFFEELH 466
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 134/288 (46%), Gaps = 23/288 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + +NS+L + + G +E +L EM GI D +TY T L A +
Sbjct: 286 GVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLA 345
Query: 68 DKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---NS 121
+I++ M PNV V Y+TV +GY K G LD+AL + ++K A +
Sbjct: 346 FQIMSEMPRKHIMPNV----VTYSTVIDGYAKAGRLDEALNLFN----EMKFASIGLDRV 397
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+YN +L++Y K G+ ++ L + E+ +K Y ++ K E +++FEE
Sbjct: 398 SYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEM 457
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+++ + + + LIDVY + GL ++A + K G + V + L +N +
Sbjct: 458 KAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLV 517
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
AV + ++ T +P+V + + +D F G G AE I+
Sbjct: 518 ESAVSFLDEM-----TKEGIRPNVVTYNSIIDAF---GRSGSAECVID 557
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 42/230 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M + V Y++++ Y K G ++ +L +EM+ I DR +Y T LS YA
Sbjct: 349 MSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYA- 407
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKV 119
K+G ++AL + K+ E IK V
Sbjct: 408 -----------------------------------KLGRFEEALNVCKEMESSGIKKDAV 432
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIF 177
YN +L YGK GK ++V R++E KA ++ N Y +I K + A ++F
Sbjct: 433 T--YNALLGGYGKQGKYEEVKRVFE-EMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVF 489
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
E++ L D + + LID C+NGL+E A + ++ +G +V ++
Sbjct: 490 REFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTY 539
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ + V YN++L Y K G +E++ + EM+ I + TY T + Y+
Sbjct: 420 KEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKG 479
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVN 120
++ ++ + + D V+Y+ + + K GL++ A++ L + ++E I+ V
Sbjct: 480 GLYQEAMEVFREFK-KAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVT 538
Query: 121 SAYNVILTLYGKYGKKDDVL 140
YN I+ +G+ G + V+
Sbjct: 539 --YNSIIDAFGRSGSAECVI 556
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 10/181 (5%)
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLD-DLESAEKIFEE 179
A++ +++ YG+ G D+ ++++E K + +K Y VI + K D A +IF+E
Sbjct: 222 AFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDE 281
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ D N L+ V R GL E A NL + +G E + ++ L + Q
Sbjct: 282 MLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQ 341
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ A + M ++ + P+V + + +D + G + A N L N+ F
Sbjct: 342 MDLAFQIMSEMPRKHIM-----PNVVTYSTVIDGYAKAGRLDEALN---LFNEMKFASIG 393
Query: 300 L 300
L
Sbjct: 394 L 394
>gi|224106481|ref|XP_002314181.1| predicted protein [Populus trichocarpa]
gi|222850589|gb|EEE88136.1| predicted protein [Populus trichocarpa]
Length = 525
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 142/301 (47%), Gaps = 10/301 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+ G + +++N ++ L+ G+ + + ++ +M + + TY + A+
Sbjct: 180 MKKMREQGHPISYLIFNRLIILHSSPGSRKMIPKILAQMRADKVVPHVSTYNILMKIEAN 239
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +G+ K+ M+ +PN V + + + L A A ++ E+ G
Sbjct: 240 EHNIDGLVKVFNDMKRFKVEPNE----VSFCILATAHAAARLYTVAEAYVEAVEKSCSGD 295
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S +V++ LYG GK+ ++ R W + + V + Y I + K+ L AE+++
Sbjct: 296 NW-STLDVLIILYGHLGKEKELERTWGIVLELPHVRSKSYMLAIEAYGKIGQLSRAEELW 354
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E +S T N ++ VYC++GL++KA ++ G + + ++ +LA G +
Sbjct: 355 LEMKSIHGLRSTEQFNSMLSVYCKHGLIKKATGNFREMEINGCKANSITFRHLALGCLKA 414
Query: 238 SQIHKAVEA--MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + +A++ M K L + P +E+ + ++ F ++GD+ E E L +
Sbjct: 415 NLVEEALKTLEMGKNLTTSNRVKNSTPWLETTLSIIELFAEKGDVVNVEKLFEELAKAKY 474
Query: 296 I 296
I
Sbjct: 475 I 475
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 148/348 (42%), Gaps = 50/348 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KMR GL+ T V YN ML +Y K G ++ K+ L+ EM NG+ +D +T T +SA
Sbjct: 232 FEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACG 291
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------ 113
+ K ++++ VA + Y ++ +GK G+ +AL++LK+ E+
Sbjct: 292 REGLLDEARKFFARLKSEGYVAGTFT-YNSLLQVFGKAGIYSEALSILKEMEKNNCPPDL 350
Query: 114 ---------------------------IKGAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
KG N+ Y ++ YGK GK+D L +
Sbjct: 351 VTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQ 410
Query: 146 YKKAVKVLNNGYRNVISSLL-KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
K++ V N N I +L K LE + + S ++ N ++ + C N
Sbjct: 411 MKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAM-CGNKG 469
Query: 205 LEKAENLVNHE-KLKGREIHVKSWYYLATGY-RQNSQIHKAVEAMKKVLAAYQTLVK--W 260
+ K N V E K G E + ++ L Y R SQI V+ Y+ ++K +
Sbjct: 470 MHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQI--------DVVKMYEEMIKAGF 521
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV 308
P V + A L+ GD AE+ I + KGF P + L+ N
Sbjct: 522 TPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNC 569
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/303 (18%), Positives = 120/303 (39%), Gaps = 53/303 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M++ G YN++L + K E++ ++ +M NG + T+ T L+ +
Sbjct: 408 FRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGN 467
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
H+ ++++ M++ +PN
Sbjct: 468 KGMHKYVNRVFREMKSCGFEPN-------------------------------------- 489
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+N ++ YG+ G + DV++++ E+ K Y ++++L + D E+AE +
Sbjct: 490 --RDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESV 547
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ +S+ + + +++ Y + G E + E++ I SW L T
Sbjct: 548 ILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKI--EEEIYNGHI-FPSWILLRTLVLA 604
Query: 237 NSQIHKAVEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
N + +A+ M++ A+Q K +KP + + L F A + L+ + G
Sbjct: 605 NFK-RRALMGMER---AFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESG 660
Query: 295 FIP 297
P
Sbjct: 661 LQP 663
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 105/237 (44%), Gaps = 9/237 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G YN++L + G++E +S++ +M+ G + +Y L+ YA
Sbjct: 514 EEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKG 573
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYAT-VGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ GI+KI + + ++ W++ T V + + L+ A + + K V
Sbjct: 574 GNGRGIEKIEEEI-YNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLV- 631
Query: 121 SAYNVILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+N +L+++ K Y + ++LR+ + + ++ Y +++ + + E+I
Sbjct: 632 -LFNSMLSIFAKNKMYDRAHEMLRL--IRESGLQPDLVTYNSLMDMYARGGECWKGEEIL 688
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ + D N +I +CR GL+++A ++ + G + ++ GY
Sbjct: 689 KGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGY 745
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK-DDV 139
+LD + T+ + Y ++G ++A+ M +K + + + YNV+L +YGK G+ + +
Sbjct: 206 SLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVT-YNVMLDVYGKMGRSWNKI 264
Query: 140 LRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
L + E+ ++ VIS+ + L+ A K F +S+ T N L+ V
Sbjct: 265 LGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQV 324
Query: 199 YCRNGLLEKAENLV 212
+ + G+ +A +++
Sbjct: 325 FGKAGIYSEALSIL 338
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 148/348 (42%), Gaps = 50/348 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KMR GL+ T V YN ML +Y K G ++ K+ L+ EM NG+ +D +T T +SA
Sbjct: 232 FEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACG 291
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------ 113
+ K ++++ VA + Y ++ +GK G+ +AL++LK+ E+
Sbjct: 292 REGLLDEARKFFARLKSEGYVAGTFT-YNSLLQVFGKAGIYSEALSILKEMEKNNCPPDL 350
Query: 114 ---------------------------IKGAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
KG N+ Y ++ YGK GK+D L +
Sbjct: 351 VTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQ 410
Query: 146 YKKAVKVLNNGYRNVISSLL-KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
K++ V N N I +L K LE + + S ++ N ++ + C N
Sbjct: 411 MKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAM-CGNKG 469
Query: 205 LEKAENLVNHE-KLKGREIHVKSWYYLATGY-RQNSQIHKAVEAMKKVLAAYQTLVK--W 260
+ K N V E K G E + ++ L Y R SQI V+ Y+ ++K +
Sbjct: 470 MHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQI--------DVVKMYEEMIKAGF 521
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV 308
P V + A L+ GD AE+ I + KGF P + L+ N
Sbjct: 522 TPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNC 569
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/303 (18%), Positives = 120/303 (39%), Gaps = 53/303 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M++ G YN++L + K E++ ++ +M NG + T+ T L+ +
Sbjct: 408 FRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGN 467
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
H+ ++++ M++ +PN
Sbjct: 468 KGMHKYVNRVFREMKSCGFEPN-------------------------------------- 489
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+N ++ YG+ G + DV++++ E+ K Y ++++L + D E+AE +
Sbjct: 490 --RDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESV 547
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ +S+ + + +++ Y + G E + E++ I SW L T
Sbjct: 548 ILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKI--EEEIYNGHI-FPSWILLRTLVLA 604
Query: 237 NSQIHKAVEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
N + +A+ M++ A+Q K +KP + + L F A + L+ + G
Sbjct: 605 NFK-RRALMGMER---AFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESG 660
Query: 295 FIP 297
P
Sbjct: 661 LQP 663
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 105/237 (44%), Gaps = 9/237 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G YN++L + G++E +S++ +M+ G + +Y L+ YA
Sbjct: 514 EEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKG 573
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYAT-VGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ GI+KI + + ++ W++ T V + + L+ A + + K V
Sbjct: 574 GNGRGIEKIEEEI-YNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLV- 631
Query: 121 SAYNVILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+N +L+++ K Y + ++LR+ + + ++ Y +++ + + E+I
Sbjct: 632 -LFNSMLSIFAKNKMYDRAHEMLRL--IRESGLQPDLVTYNSLMDMYARGGECWKGEEIL 688
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ + D N +I +CR GL+++A ++ + G + ++ GY
Sbjct: 689 KGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGY 745
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK-DDV 139
+LD + T+ + Y ++G ++A+ M +K + + + YNV+L +YGK G+ + +
Sbjct: 206 SLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVT-YNVMLDVYGKMGRSWNKI 264
Query: 140 LRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
L + E+ ++ VIS+ + L+ A K F +S+ T N L+ V
Sbjct: 265 LGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQV 324
Query: 199 YCRNGLLEKAENLV 212
+ + G+ +A +++
Sbjct: 325 FGKAGIYSEALSIL 338
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 122/246 (49%), Gaps = 7/246 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M++ G+A YNS++ K ++ S + EM ENG+ + +TY +S Y +
Sbjct: 475 LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE 534
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ--IKGAK 118
AS+ DK + M + V + V+ + N Y K G + +A + + +Q + AK
Sbjct: 535 ASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAK 593
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y V++ K K DD I+ E+ K + Y +I+ KL +++ A IF
Sbjct: 594 ---TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + L + I N L+ +CR+G +EKA+ L++ +KG + ++ + GY ++
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710
Query: 238 SQIHKA 243
+ +A
Sbjct: 711 GDLAEA 716
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 129/306 (42%), Gaps = 19/306 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G+ V+ ++ Y K G + S M + GI D TY ++
Sbjct: 545 VKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFK 604
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++I M +A D Y + NG+ K+G + KA ++ + E+ G N
Sbjct: 605 NDKVDDAEEIFREMRGK-GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE--GLTPN 661
Query: 121 SA-YNVILTLYGKYGKKD------DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
YN++L + + G+ + D + + L+ AV Y +I K DL A
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT-----YCTIIDGYCKSGDLAEA 716
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++F+E + + L D+ + L+D CR +E+A + K KG + L
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALINW 775
Query: 234 YRQNSQIHKAVEAMKKVL-AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+ + E + +++ ++ KP+ + +DY EG++ A+ + +
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRF--GKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 293 KGFIPT 298
+PT
Sbjct: 834 ANLMPT 839
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 14/294 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL Y S+++ Y + N + L+ EM++ I YTY T + + D +G
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436
Query: 68 DKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
I+ M A PNV VIY T+ + + A+ +LK+ +EQ + YN
Sbjct: 437 YNIVKEMIASGCRPNV----VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI-FCYN 491
Query: 125 VILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K + D+ + E+ + +K Y IS ++ + SA+K +E
Sbjct: 492 SLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ + + LI+ YC+ G + +A + +G K++ L G +N ++ A
Sbjct: 552 GVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDA 611
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
E +++ P V S ++ F G++ A + + + ++G P
Sbjct: 612 EEIFREMRGK-----GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 20/264 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G+A Y ++ + K GN +K S+ EM E G+T + Y L +
Sbjct: 615 FREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCR 674
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + E ++L M PN V Y T+ +GY K G L +A + E ++KG
Sbjct: 675 SGEIEKAKELLDEMSVKGLHPNA----VTYCTIIDGYCKSGDLAEAFRLF--DEMKLKGL 728
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELY---KKAVKVLNNGYRNVISSLLKLDDLESAE 174
+S V TL + +DV R ++ KK + +I+ + K E
Sbjct: 729 VPDSF--VYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786
Query: 175 KIFEEWESQALCYDTRIPN-----FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
++ + + PN +ID C+ G LE A+ L + + V ++
Sbjct: 787 EVLNRLMDGSFDRFGK-PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTS 845
Query: 230 LATGYRQNSQIHKAVEAMKKVLAA 253
L GY + + + + +AA
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAA 869
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 122/246 (49%), Gaps = 7/246 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M++ G+A YNS++ K ++ S + EM ENG+ + +TY +S Y +
Sbjct: 475 LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE 534
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ--IKGAK 118
AS+ DK + M + V + V+ + N Y K G + +A + + +Q + AK
Sbjct: 535 ASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAK 593
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y V++ K K DD I+ E+ K + Y +I+ KL +++ A IF
Sbjct: 594 ---TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + L + I N L+ +CR+G +EKA+ L++ +KG + ++ + GY ++
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710
Query: 238 SQIHKA 243
+ +A
Sbjct: 711 GDLAEA 716
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 129/306 (42%), Gaps = 19/306 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G+ V+ ++ Y K G + S M + GI D TY ++
Sbjct: 545 VKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFK 604
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++I M +A D Y + NG+ K+G + KA ++ + E+ G N
Sbjct: 605 NDKVDDAEEIFREMRGK-GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE--GLTPN 661
Query: 121 SA-YNVILTLYGKYGKKD------DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
YN++L + + G+ + D + + L+ AV Y +I K DL A
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT-----YCTIIDGYCKSGDLAEA 716
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++F+E + + L D+ + L+D CR +E+A + K KG + L
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALINW 775
Query: 234 YRQNSQIHKAVEAMKKVL-AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+ + E + +++ ++ KP+ + +DY EG++ A+ + +
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRF--GKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 293 KGFIPT 298
+PT
Sbjct: 834 ANLMPT 839
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 14/294 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL Y S+++ Y + N + L+ EM++ I YTY T + + D +G
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436
Query: 68 DKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
I+ M A PNV VIY T+ + + A+ +LK+ +EQ + YN
Sbjct: 437 YNIVKEMIASGCRPNV----VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI-FCYN 491
Query: 125 VILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K + D+ + E+ + +K Y IS ++ + SA+K +E
Sbjct: 492 SLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ + + LI+ YC+ G + +A + +G K++ L G +N ++ A
Sbjct: 552 GVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDA 611
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
E +++ P V S ++ F G++ A + + + ++G P
Sbjct: 612 EEIFREMRGK-----GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 20/264 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G+A Y ++ + K GN +K S+ EM E G+T + Y L +
Sbjct: 615 FREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCR 674
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + E ++L M PN V Y T+ +GY K G L +A + E ++KG
Sbjct: 675 SGEIEKAKELLDEMSVKGLHPNA----VTYCTIIDGYCKSGDLAEAFRLF--DEMKLKGL 728
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELY---KKAVKVLNNGYRNVISSLLKLDDLESAE 174
+S V TL + +DV R ++ KK + +I+ + K E
Sbjct: 729 VPDSF--VYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786
Query: 175 KIFEEWESQALCYDTRIPN-----FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
++ + + PN +ID C+ G LE A+ L + + V ++
Sbjct: 787 EVLNRLMDGSFDRFGK-PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTS 845
Query: 230 LATGYRQNSQIHKAVEAMKKVLAA 253
L GY + + + + +AA
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAA 869
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 7/242 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + YN++L K G + +M EM I + TY T + YA A +
Sbjct: 207 GIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEA 266
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVNSAYNVI 126
+ M+ ++ LD V Y T+ + Y K+G ++AL + K+ E IK V YN +
Sbjct: 267 LNLFNEMKF-ASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVT--YNAL 323
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQA 184
L YGK GK ++V R++E KA ++ N Y +I K + A ++F E++
Sbjct: 324 LGGYGKQGKYEEVKRVFE-EMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAG 382
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
L D + + LID C+NGL+E A + ++ +G +V ++ + + ++ + A
Sbjct: 383 LKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDAT 442
Query: 245 EA 246
E+
Sbjct: 443 ES 444
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 29/290 (10%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGN--------FEKLDSLMHEMEENGITYDRYTYCTRLSA 57
D GL V YN+++ K G F++++ L EM GI D +TY T L A
Sbjct: 163 DSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMN-LFSEMLYRGIEQDIFTYNTLLDA 221
Query: 58 YADASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
+ +I++ M PNV V Y+TV +GY K G LD+AL + ++
Sbjct: 222 VCKGGQMDLAFQIMSEMPRKHIMPNV----VTYSTVIDGYAKAGRLDEALNLFN----EM 273
Query: 115 KGAKV---NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDL 170
K A + +YN +L++Y K G+ ++ L + E+ +K Y ++ K
Sbjct: 274 KFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKY 333
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
E +++FEE +++ + + + LIDVY + GL ++A + K G + V + L
Sbjct: 334 EEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSAL 393
Query: 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI 280
+N + AV + ++ T +P+V + + +D F G +
Sbjct: 394 IDALCKNGLVESAVSFLDEM-----TKEGIRPNVVTYNSIIDAFGRSGIV 438
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 9/212 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M + V Y++++ Y K G ++ +L +EM+ I DR +Y T LS YA
Sbjct: 235 MSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAK 294
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + ME+ + D V Y + GYGK G ++ +K+ E++K ++
Sbjct: 295 LGRFEEALNVCKEMESS-GIKKDAVTYNALLGGYGKQGKYEE----VKRVFEEMKAERIF 349
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKI 176
Y+ ++ +Y K G + + ++ +KKA +K Y +I +L K +ESA
Sbjct: 350 PNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSF 409
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+E + + + N +ID + R+G++E A
Sbjct: 410 LDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDA 441
>gi|145335742|ref|NP_173001.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806396|sp|Q9XI21.2|PPR44_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15480, mitochondrial; Flags: Precursor
gi|332191207|gb|AEE29328.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 594
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 145/299 (48%), Gaps = 21/299 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG +T N ML LY + +K+ ++ +E+ + + TY + ++
Sbjct: 252 KMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSN 310
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++I+ M+++ V LD A + Y GL +KA +LK +++G +
Sbjct: 311 DITGMEQIVETMKSE-GVELDLRARALIARHYASAGLKEKAEKVLK----EMEGESLEEN 365
Query: 123 YNV---ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKI 176
++ +L++YG ++D+V R+W++ ++ N Y V++++L K+D ++ AE +
Sbjct: 366 RHMCKDLLSVYGYLQREDEVRRVWKICEE-----NPRYNEVLAAILAFGKIDKVKDAEAV 420
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FE+ + + + + L+ VY + ++ + ++LV G I +W + Y +
Sbjct: 421 FEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVE 480
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ KA ++ K + + Q KP + S + + GD+ E + + G+
Sbjct: 481 AGEVEKAESSLSKAIQSKQI----KPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGY 535
>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
Length = 713
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 134/296 (45%), Gaps = 8/296 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++ GL+ T Y ++KL+ K GN K ++ EM+++G++ ++ Y + YA
Sbjct: 294 FHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYAR 353
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D K+ M + D V Y + + + K G +DKAL +L+ + +
Sbjct: 354 GGDFTAAFKVWEDM-VSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIE 412
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y IL Y K G L +++ K A ++ Y +++S L K +E+A + +E
Sbjct: 413 T-YTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDE 471
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + R L + Y R G +EKA + K + I + ++ L ++
Sbjct: 472 MLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGA 531
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ +AVE +++ T K + + LD + +G++ A + ++ + GF
Sbjct: 532 MQRAVEVFQQI-----TDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGF 582
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 115/257 (44%), Gaps = 11/257 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K + L +VYNS+++ Y + GN E +++L+ +MEE G + Y T L+ +A+
Sbjct: 224 FEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAE 283
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
D E ++A P A Y + + K G + KAL +L++ ++ G
Sbjct: 284 IRDEEKCLSFFHRLKACGLSPTAA----TYGCIVKLFTKAGNMAKALDILEEMDKH--GV 337
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N Y +I+ Y + G ++WE + +K Y ++ + K ++ A
Sbjct: 338 SPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALG 397
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E ++ L ++D Y + G ++KA + + K G V S+ L +G
Sbjct: 398 VLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLA 457
Query: 236 QNSQIHKAVEAMKKVLA 252
+ Q+ A + ++LA
Sbjct: 458 KARQMENARLMLDEMLA 474
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/334 (19%), Positives = 131/334 (39%), Gaps = 41/334 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR + +Y S++ Y + + E + EM GI + +C+ +S YA
Sbjct: 154 FEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYAS 213
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKG--- 116
A ++E + +A+ N+ ++Y ++ Y + G ++ A+L + EE+ +G
Sbjct: 214 AGNNEAAEHWFEKFKAE-NLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLG 272
Query: 117 ------------------------------AKVNSAYNVILTLYGKYGKKDDVLRIW-EL 145
+ + Y I+ L+ K G L I E+
Sbjct: 273 LYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM 332
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
K V Y ++ + D +A K++E+ S L D N L+ +C+ G +
Sbjct: 333 DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRM 392
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE 265
+KA ++ + + ++++ + GY + I KA+E ++ A +P V
Sbjct: 393 DKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTA-----GLRPGVV 447
Query: 266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
S + L + A ++ + G +P +
Sbjct: 448 SYNSLLSGLAKARQMENARLMLDEMLANGVVPNE 481
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 2/240 (0%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V+YN + + K GN + HE++ G+ D +Y + + A +++
Sbjct: 250 VLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQ 309
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
MEA+ +V + Y T+ GYG G + A +L++ E+ V S +N ILT GK
Sbjct: 310 MEAERSVPCAYA-YNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS-FNSILTCLGKK 367
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
K D+ L ++E+ KK + ++ Y +I L +E A +I +E E +L + N
Sbjct: 368 RKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 427
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
++D C+ LE+A + +G ++ L G + Q+ +A +K+L A
Sbjct: 428 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 487
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 18/266 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM D G VVY S+++ ++ G E + E+ G D T L+ Y D
Sbjct: 481 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD----LTLLNTYMD 536
Query: 61 ASDHEG-IDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
G ++K + E + D Y+ + +G K G + + ++Q G
Sbjct: 537 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQ--GF 594
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+++ AYN ++ + K GK I E + +K V+ Y ++ L K+D L+ A
Sbjct: 595 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 654
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+FEE +S+ + + + + LID + + G +++A ++ KG +V +W L
Sbjct: 655 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 714
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWK 261
+ +I++A L +Q++ + K
Sbjct: 715 KAEEINEA-------LVCFQSMKEMK 733
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 116/280 (41%), Gaps = 40/280 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+ G A YN+++ + K+G K ++ EM+E + TY + A
Sbjct: 586 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 645
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ----- 113
+ +D+ + E + L+ V+Y+++ +G+GKVG +D+A +L++ ++
Sbjct: 646 I---DRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 702
Query: 114 -----------IKGAKVNSA------------------YNVILTLYGKYGKKDDVLRIWE 144
+K ++N A Y++++ + K + W+
Sbjct: 703 VYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQ 762
Query: 145 LYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
+K V N Y +IS L K+ ++ A +FE +++ D N LI+
Sbjct: 763 DMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNAN 822
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+A + +L+G I++KS L ++ + +A
Sbjct: 823 RAMEAYQVFEETRLRGCRINIKSCISLLDALNKSECLEQA 862
>gi|5103846|gb|AAD39676.1|AC007591_41 F9L1.43 [Arabidopsis thaliana]
Length = 623
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 145/299 (48%), Gaps = 21/299 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG +T N ML LY + +K+ ++ +E+ + + TY + ++
Sbjct: 281 KMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSN 339
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++I+ M+++ V LD A + Y GL +KA +LK +++G +
Sbjct: 340 DITGMEQIVETMKSE-GVELDLRARALIARHYASAGLKEKAEKVLK----EMEGESLEEN 394
Query: 123 YNV---ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKI 176
++ +L++YG ++D+V R+W++ ++ N Y V++++L K+D ++ AE +
Sbjct: 395 RHMCKDLLSVYGYLQREDEVRRVWKICEE-----NPRYNEVLAAILAFGKIDKVKDAEAV 449
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FE+ + + + + L+ VY + ++ + ++LV G I +W + Y +
Sbjct: 450 FEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVE 509
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ KA ++ K + + Q KP + S + + GD+ E + + G+
Sbjct: 510 AGEVEKAESSLSKAIQSKQI----KPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGY 564
>gi|91806413|gb|ABE65934.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 279
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 37/199 (18%)
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI-FEEWESQAL 185
++LYG+ G+ +DV R+W+ YK + N +R +I SLLKL D + AEKI + EWE L
Sbjct: 1 MSLYGEAGEIEDVHRVWDKYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGL 60
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNH---------------EKL--KGREIHVKSWY 228
+D RIP+ L+ Y G++ KA+ LVN E++ KG ++
Sbjct: 61 EFDNRIPDMLVSGYREKGMVMKADKLVNKTLWIRGLATPITLLLEEMDKKGNKVSPPGLR 120
Query: 229 YLATGYRQNSQIHKAVEA-----MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283
L R ++Q+ KA+EA KKV + E A L + + A
Sbjct: 121 DLIKNLRDSNQLSKALEASTWMCQKKVFNLFS---------EDYATRLHLTEKVLGLEEA 171
Query: 284 ENFIELLNDKGFIPTDLQD 302
ENF E IP +++D
Sbjct: 172 ENFFE-----SSIPENMKD 185
>gi|255563224|ref|XP_002522615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538091|gb|EEF39702.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 426
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 109/213 (51%), Gaps = 4/213 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++++ L+ T + YN M+ LY G EK+ ++ E++ I D +TY +S+ A
Sbjct: 199 ERIKGSNLSFTALTYNEMMTLYMSVGQVEKVSLVVEELKRQKIAPDIFTYNLWISSCAAI 258
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG-LLDKALAMLKKSEEQIKGAKVN 120
+ + + +IL M+ D DW+ Y + N Y K G L++ + + ++E+ I +
Sbjct: 259 LNIDQVTRILDEMKHDSGCNDDWLRYIDIANIYVKAGHLVNTESSAVVEAEKSITQREWI 318
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++ LY KD V +IW+ L K+ N + ++SS + L L+ A ++ ++
Sbjct: 319 T-YDFLIILYAGLRDKDKVDQIWKSLRMTKQKMTNRNFVCILSSYMMLGHLKEAGEVLDQ 377
Query: 180 W-ESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W +S +D + L+D + +GL E A +
Sbjct: 378 WKKSTTTDFDLSACSRLLDAFSGSGLTEIANDF 410
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 12/261 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V Y++++ K+ F + ++ EM+ G+T D +TY + A E
Sbjct: 279 GMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEA 338
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+++L M A D V+Y+++ + + K G L +A L++ +Q K V + YN ++
Sbjct: 339 EQMLRRM-AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT-YNTVI 396
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQAL 185
K GK + I E +++ VL + Y VI+ L K D L A+K+ +
Sbjct: 397 DGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGC 456
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D +ID C+ G LE+AE L+ K G +V ++ L +G + ++ +A
Sbjct: 457 NPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAER 516
Query: 246 AMKKV--------LAAYQTLV 258
M+++ L Y T+V
Sbjct: 517 VMEEMRNAGCPPNLVTYNTMV 537
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 8/220 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G VVY+S++ + K+G + + EM + + D TY T +
Sbjct: 342 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 401
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
IL M+ +V D V Y+TV NG K +L +A +L +++ A N
Sbjct: 402 LGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL----DRMCKAGCN 457
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
Y I+ K G+ ++ + + K+A N Y +IS L K ++ AE++
Sbjct: 458 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERV 517
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
EE + + N +++ C +G +++A+ LV K
Sbjct: 518 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK 557
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 108/239 (45%), Gaps = 12/239 (5%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ++ + G+ L+ EM+ G D +T+ ++A A+A D +G L M
Sbjct: 115 YNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG 174
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGK-- 132
DPNV V Y + + + L++A+ +L++ E +G N YNV++ K
Sbjct: 175 CDPNV----VTYTALIAAFARAKKLEEAMKLLEEMRE--RGCPPNLVTYNVLVDALCKLS 228
Query: 133 -YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
G DV++ A V+ + +++ K +++ A K+ ++ + +
Sbjct: 229 MVGAAQDVVKKMIEGGFAPNVMT--FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 286
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ LID C++ +A+ ++ K +G ++ L G + +I +A + ++++
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 345
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 15/250 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +R +G V Y +++ + + E+ L+ EM E G + TY + A
Sbjct: 167 MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226
Query: 61 AS-DHEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
S D + M+E PNV + + ++ +G+ K G +D A +L KG
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNV----MTFNSLVDGFCKRGNVDDARKLLGIMVA--KGM 280
Query: 118 KVNSA-YNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ N Y+ + L K+ + +VL E+ + V Y +I L K D +E A
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLE--EMKTRGVTPDAFTYSALIHGLCKADKIEEA 338
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E++ D + + +I +C++G L +A+ + + + + V ++ + G
Sbjct: 339 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 398
Query: 234 YRQNSQIHKA 243
+ +I +A
Sbjct: 399 LCKLGKIAEA 408
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 4/209 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ L V+YN + + K G + HE+E NG+ D TY + +
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A+ + ++ +E + V + Y T+ GYG G D+A ++L++ ++ KG+ +
Sbjct: 286 ANRLDEAVEMFEHLEKNRRVPCTYA-YNTMIMGYGSAGKFDEAYSLLER--QRAKGSIPS 342
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN ILT K GK D+ LR++E KK + Y +I L + L+ A ++ +
Sbjct: 343 VIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDS 402
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ L + R N ++D C++ L++A
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 146/350 (41%), Gaps = 36/350 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM D ++VY S++K ++ G E + +M + D T + A
Sbjct: 471 EKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKA 530
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E + +++ V D Y+ + +G K G ++ + +EQ G +++
Sbjct: 531 GEPEKGRAMFEEIKSRRFVP-DARSYSILIHGLIKAGFANETYELFYSMKEQ--GCVLDT 587
Query: 122 -AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN+++ + K GK + ++ E K K + Y +VI L K+D L+ A +FEE
Sbjct: 588 RAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 647
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S+ + + I + LID + + G +++A ++ KG +V +W L + +
Sbjct: 648 AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEE 707
Query: 240 IHKAV---EAMK-------------------KVLAAYQTLVKW--------KPSVESLAA 269
I++A+ ++MK KV + V W KPS S
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTT 767
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIP-TDLQDKLLDNVQNGKSNLETL 318
+ G+I A + G +P + + +++ + NG ++
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAF 817
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKIL 71
V+Y+S++ + K G ++ ++ E+ + G+T + YT+ + L A A + +E +
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQ 716
Query: 72 TMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILT 128
+M E PN V Y + NG KV +KA ++ ++Q G K ++ +Y +++
Sbjct: 717 SMKELKCTPN----QVTYGILINGLCKVRKFNKAFVFWQEMQKQ--GMKPSTISYTTMIS 770
Query: 129 LYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWESQALCY 187
K G + +++ +K V ++ Y +I L + A +FEE + L
Sbjct: 771 GLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHI 830
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSW 227
+ L+D +N LE+A + + G+ H +SW
Sbjct: 831 HNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAARSW 871
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 96/236 (40%), Gaps = 5/236 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMM 74
YNS+L + + NF+ LD ++ EM G T + + A+ EG D + M
Sbjct: 101 YNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMR 160
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
+ A Y T+ + V D L + ++ +E V+ + ++ + K G
Sbjct: 161 KFKFRPAFS--AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVH-LFTTLIRGFAKEG 217
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ D L + E+ ++ Y I S K+ ++ A K F E E+ L D
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYT 277
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
+I V C+ L++A + H + R ++ + GY + +A +++
Sbjct: 278 SMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 115/295 (38%), Gaps = 8/295 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ GL N M+ K+ ++ ++ +M+ T D T+C+ +
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGR 462
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ KI M D + + ++Y ++ + G + + K Q +
Sbjct: 463 VDDAYKIYEKM-LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQ-LL 520
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWES 182
N + K G+ + ++E K V + Y +I L+K ++F +
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKE 580
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
Q DTR N +ID +C+ G + KA L+ K KG E V ++ + G + ++ +
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDE 640
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A ++ + L +V ++ +D F G I A +E L KG P
Sbjct: 641 AYMLFEEAKSKRIEL-----NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 151/352 (42%), Gaps = 34/352 (9%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
++D + V YN M+ K G F++ + M +N D +TY + + +A +
Sbjct: 248 VKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGN 307
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+G ++ + + ++ +D V + + NG+ + G + ++ + ++ + +Y
Sbjct: 308 IDGAVRVYKEI-VESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKE--NCQTVVSY 364
Query: 124 NVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N+++ + GK ++ + IWEL KK + + Y +I L K L A KIF+E E
Sbjct: 365 NILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAED 424
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
D + ++D C+ G +++A ++VN +G ++ L G+ + S++
Sbjct: 425 GPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLED 484
Query: 243 AVEAMKKV--------LAAYQTLVK----------------------WKPSVESLAACLD 272
A+ +++ + +Y TL+K WKP + + + +D
Sbjct: 485 AINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMD 544
Query: 273 YFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGN 324
E I A N + DKGF P +L + LE +LY +
Sbjct: 545 GLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSH 596
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 7/232 (3%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ++K+ K EK SL+ M + D ++Y T ++ D G K+ M
Sbjct: 154 YNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMS 213
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
VA D Y + +G+ K G DK + ++ + YN+++ K G+
Sbjct: 214 VRGVVA-DVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGR 272
Query: 136 KDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
D+ L IWE K + + Y ++I L + +++ A ++++E +L D N
Sbjct: 273 FDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNA 332
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGRE--IHVKSWYYLATGYRQNSQIHKAV 244
+++ +CR G ++++ L + G+E V S+ L G +N ++ +A+
Sbjct: 333 MLNGFCRAGKIKESFEL---WMVMGKENCQTVVSYNILIKGLFENGKVEEAI 381
>gi|148906608|gb|ABR16456.1| unknown [Picea sitchensis]
Length = 600
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 132/295 (44%), Gaps = 7/295 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM+ G + T YN +L L YK + +K+ ++ ME+ G+ +TY +
Sbjct: 254 FKKMKAEGFSLTAFEYNQLL-LLYKRLDKKKIQDVLKMMEDEGVKPTIFTYKILIDVKGW 312
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G++++ M+++ ++ +D + Y + GL +KA +LK+ E +
Sbjct: 313 MGDIGGMEQVAENMKSE-DIEMDSGTLELLARHYIRAGLAEKAEVVLKELE-NVSLKDKR 370
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S ++L LY + GK +V RIW+ ++ + + Y + + KL +E AE FE+
Sbjct: 371 SRLKMLLPLYAELGKPTEVERIWKDFEAFPALRLDEYATGVVAWGKLGQIEKAEITFEKL 430
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + N L++VY + LL K + LV G I W L + ++
Sbjct: 431 LNSGKKLSAKHYNALLNVYADHHLLLKGKELVKRMSDNGCTIEPPIWDALIRLHVNAGEL 490
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
KA + K Q +P ++ L+ + + GD+ AE + + G+
Sbjct: 491 EKADSILFKACNQKQL----RPKYWTMVTILEKYAERGDVANAEKIFDRMRQAGY 541
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 11/258 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q MR + Y +++ + + GN + + + E++ G D YTY L AY+
Sbjct: 229 FQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSR 288
Query: 61 ASDHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
G ++ TM+EA V D V Y + + +G+ GL+ A A+ S +++
Sbjct: 289 GGHPAGAKEVFETMLEA--GVKADHVSYNILIDAFGRAGLISDAQAIYD-SMKKVGFKPT 345
Query: 120 NSAYNVILTLYGKYGKKDD----VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
++ ++L+ + K G+ D V R+ + + + N + ++D +ES
Sbjct: 346 MKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMES--- 402
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
++E + D N LI+VY + G +E+AE + N + KG V SW L Y
Sbjct: 403 LYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYS 462
Query: 236 QNSQIHKAVEAMKKVLAA 253
+ K V +K+L A
Sbjct: 463 KRKLYRKCVSVYQKMLIA 480
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 123/302 (40%), Gaps = 16/302 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M++ + V YN+ L++ K+G+++ + + EM+ G+ T+ ++ Y
Sbjct: 159 LHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGK 218
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + + M P++ Y + N + + G +A + +E Q G
Sbjct: 219 AHHSAKAEHLFQSMRKALCPPSL----FTYTALINAHAREGNCVRAEEIF--AELQSVGF 272
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ YN +L Y + G ++E + + VK + Y +I + + + A+
Sbjct: 273 VPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQA 332
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
I++ + + L+ + + G + AEN V + G E + L Y
Sbjct: 333 IYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYG 392
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ ++ K M+ + + Q V KP + +L ++ + G I AE L KGF
Sbjct: 393 NSGRMDK----MESLYESMQGSV-CKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGF 447
Query: 296 IP 297
P
Sbjct: 448 TP 449
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 114/326 (34%), Gaps = 55/326 (16%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ T +N ++ Y + G E+ + ++HEM+E+ + TY T
Sbjct: 127 MKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNT---------- 176
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
Y V N G L + E Q +G V A
Sbjct: 177 -----------------------YLEVLNKSGSWQLAEDVF-----REMQNRG--VPPAV 206
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNVISSLLKLDDLESAEKIFEE 179
N + YGK + L++ K L Y +I++ + + AE+IF E
Sbjct: 207 NTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAE 266
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S D N L++ Y R G A+ + G + S+ L + +
Sbjct: 267 LQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGL 326
Query: 240 IHKA---VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
I A ++MKK V +KP+++S L F G + AENF+ L G
Sbjct: 327 ISDAQAIYDSMKK--------VGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVE 378
Query: 297 PTDLQDKLLDNVQNGKSNLETLRELY 322
P L ++ + LY
Sbjct: 379 PDTFMFNSLLGAYGNSGRMDKMESLY 404
>gi|125599572|gb|EAZ39148.1| hypothetical protein OsJ_23575 [Oryza sativa Japonica Group]
Length = 610
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 133/305 (43%), Gaps = 15/305 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++++DL L T + N M+ LY + K+ S++ ME+ + +TY +
Sbjct: 268 FKEIKDLCLRLTVTLCNQMILLYKRIAP-GKVASVLMLMEKENVKPSAFTYRLLIDLKGR 326
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
++D GI+ +L M+A +P+ + V Y GL +KA A++K+ E Q+ +
Sbjct: 327 SNDLAGIEVVLNEMKAYGIEPSTSTQ----TMVARFYIHGGLTEKAEAVVKEMEAQLSNS 382
Query: 118 K-VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
K +L LY K +DV RIWE+ + + + + I + +L +E AE+
Sbjct: 383 KDGRHVIKSLLHLYAALNKPNDVARIWEM---CTEPMLEDFLSAIKAWGELGLIEKAEET 439
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FE + ++ N +++VY +N LL K + V G +W L Y
Sbjct: 440 FEAMANAPEKLSSKYYNAMLNVYAQNKLLSKGKQFVERMCRDGCPNGPLTWDALINLYVN 499
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ ++ KA + L + KP S + + GDI E + L + G+
Sbjct: 500 SGEVEKADSFL---LNVAEENPDRKPLFTSYFFLMKGYAKRGDIHNTEKIFDRLKNVGYA 556
Query: 297 PTDLQ 301
P L
Sbjct: 557 PRPLH 561
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 152/341 (44%), Gaps = 20/341 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYT---YCTRLSA 57
+ +M +G+ T YN+M++ Y K N ++ L+ EM+++ + YT L
Sbjct: 399 LNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCR 458
Query: 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ D + +I+ + PN VIY T+ G+ + G +A+ +LK +++
Sbjct: 459 HGSIEDASRVFEIMVSLGVKPNA----VIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQP 514
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
V +VI+ L ++ + E+ ++ +K Y +I K +++ A++ F
Sbjct: 515 DVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYF 574
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATGYR 235
+E + + + LID YC+ G +A ++ + GR +H V+++ L G
Sbjct: 575 KEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRC--MLGRSVHPDVRTYSALIHGLL 632
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+N ++ A+E + + L + LV P V + + + F +G IG A E + KG
Sbjct: 633 RNGKLQGAMELLSEFLE--KGLV---PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGI 687
Query: 296 IPTDLQDKLLDNVQNGKSNLETLRELY----GNSLAGNEET 332
P + L N +E REL+ G LA N T
Sbjct: 688 SPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVT 728
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 124/297 (41%), Gaps = 11/297 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DA 61
+M + GL Y +++ Y K+G + D EM GI + + Y +
Sbjct: 541 EMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEG 600
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
S E M+ +V D Y+ + +G + G L A+ +L + E+ V +
Sbjct: 601 STTEATSIFRCML--GRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFT 658
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN I++ + K G ++ E + +K + Y +I+ L K ++E A ++F+
Sbjct: 659 -YNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGI 717
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L ++ +ID YC++G L KA L + LKG + L G R+
Sbjct: 718 PGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNT 777
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KA+ +++ K S SL A +D F G + A +E + DK P
Sbjct: 778 EKALSLF------LESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKP 828
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 128/294 (43%), Gaps = 14/294 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + N +L K E + M E + +D YTY ++A+ A + +
Sbjct: 196 GFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEG 255
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
++L ME + + V Y V G + G +D+A + K +++ A V + Y++++
Sbjct: 256 KRLLFEME-EKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFT-YSILI 313
Query: 128 TLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+GK + + L + E++ K +K + Y +I ++ D A ++ EE ++ +
Sbjct: 314 DGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVK 373
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY---RQNSQIHKA 243
+ N L+ C+ G +EKA+ L+N + G + +++ + GY + S++
Sbjct: 374 LNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDL 433
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ MKK LV P+ + ++ G I A E++ G P
Sbjct: 434 LSEMKK-----SNLV---PTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKP 479
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 10/231 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL YNS++ + K G K L M + GI+ + TY ++ A + I
Sbjct: 651 GLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGE---I 707
Query: 68 DKILTMMEADPN--VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYN 124
++ + + P +A + V YAT+ +GY K G L KA + E +KG +S Y+
Sbjct: 708 ERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLF--DEMTLKGVPPDSFVYS 765
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K G + L ++ E +K + ++ K + A ++ E+ +
Sbjct: 766 ALIDGCRKEGNTEKALSLFLESVQKGFAS-TSSLNALMDGFCKSGKVIEANQLLEDMVDK 824
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ D LID +C+ G L++AE + + + ++ L +GY
Sbjct: 825 HVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGY 875
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 122/284 (42%), Gaps = 10/284 (3%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ++ +++ GN ++ L+ EMEE G + TY + A + + ++ +M+
Sbjct: 239 YTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMD 298
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSAYNVILTLYGKYG 134
VA D Y+ + +G+GK +A ML+ E KG K + AY ++ + + G
Sbjct: 299 KKGLVA-DVFTYSILIDGFGKQKRCTEAKLMLE--EMFSKGLKPGHVAYTALIDGFMRQG 355
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ R+ E+ + VK+ Y ++ + K D+E A+ + E + DT+ N
Sbjct: 356 DSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYN 415
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
+I+ Y + + ++L++ K + + G + H ++E +V
Sbjct: 416 NMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCR----HGSIEDASRVFEI 471
Query: 254 YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+L KP+ + EG A +++++ KG P
Sbjct: 472 MVSL-GVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQP 514
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 7/249 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G + + V YN ++ + G ++ L M++ G+ D +TY + +
Sbjct: 261 EMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQK 320
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
+L M + + V Y + +G+ + G D A K E +G K+N
Sbjct: 321 RCTEAKLMLEEMFSK-GLKPGHVAYTALIDGFMRQG--DSGEAFRVKEEMLARGVKLNLF 377
Query: 122 AYNVILTLYGKYG--KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++ K+G +K D L + E+ +K Y N+I LK + + + E
Sbjct: 378 TYNALVKGVCKFGDMEKADAL-LNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSE 436
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L +I+ CR+G +E A + G + + + L G+ Q +
Sbjct: 437 MKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGR 496
Query: 240 IHKAVEAMK 248
+AV +K
Sbjct: 497 FQEAVRILK 505
>gi|356554749|ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Glycine max]
Length = 399
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 107/213 (50%), Gaps = 4/213 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q+++D L+ + YN M+ LY G FEK+ ++ E+++ ++ D +TY +S+ A
Sbjct: 174 QRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPIVVEELKQQKVSPDIFTYNLWISSCAAI 233
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA-MLKKSEEQIKGAKVN 120
+ + + +IL M W+ Y + N Y V LD A + L ++E++I +
Sbjct: 234 LNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVAHLDNASSNTLVETEKRITQRQWI 293
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ ++ LYG G KD + +IW L K+++ Y +ISS L L + ++ ++
Sbjct: 294 T-YDFLIILYGGLGSKDKLDQIWNSLGMTKQKMISRNYMCIISSYLMLGLTKEVGEVIDQ 352
Query: 180 W-ESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
W +S +D ++ + GL E A NL
Sbjct: 353 WKQSTTTDFDMLACKKILVAFRDIGLAEIANNL 385
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 138/304 (45%), Gaps = 14/304 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ GL T YN++LK Y KTG+ + +S++ EME +G + D +TY + AYA+
Sbjct: 314 FEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYAN 373
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L MEA V + +++ + Y G K+ +L+ +++ + V+
Sbjct: 374 AGRWESARIVLKEMEAS-GVRPNSYVFSRILASYRDRGKWQKSFQVLR----EMRNSGVS 428
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YNV++ +GK D L ++ + + V+ + +I K AE++
Sbjct: 429 PDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEEL 488
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FE + T N +I+ + E + L+ + +G +V ++ L Y Q
Sbjct: 489 FEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQ 548
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ + A+E ++ + + V KPS A ++ + G A N ++ G
Sbjct: 549 SGRFKDAIECLEVMKS-----VGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLK 603
Query: 297 PTDL 300
P+ L
Sbjct: 604 PSVL 607
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 129/299 (43%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G + Y+ ++ Y G +E ++ EME +G+ + Y + L++Y D
Sbjct: 349 VSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRD 408
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L M + V+ D Y + + +GK LD ALA + +++G + +
Sbjct: 409 RGKWQKSFQVLREMR-NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRM--RMEGVQPD 465
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ +N ++ + K G + ++E + + Y +I+S + + E + +
Sbjct: 466 AVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLG 525
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ +SQ L + L+D+Y ++G + A + K G + + L Y Q
Sbjct: 526 KMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRG 585
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A+ A + + A KPSV L + ++ F ++ A + ++ + + P
Sbjct: 586 LSEQAINAFRVMRAD-----GLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKP 639
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 9/208 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ T +++ G E+ +++ E++E G+ Y L Y +
Sbjct: 286 GLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDA 345
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ I++ ME + D Y+ + + Y G + A +LK E + G + NS ++ I
Sbjct: 346 ESIVSEMERS-GFSPDEHTYSLLIDAYANAGRWESARIVLK--EMEASGVRPNSYVFSRI 402
Query: 127 LTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L Y GK+ K VLR E+ V + Y +I + K + L+ A F+ +
Sbjct: 403 LASYRDRGKWQKSFQVLR--EMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRME 460
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ D N LID +C++G KAE L
Sbjct: 461 GVQPDAVTWNTLIDCHCKSGHHNKAEEL 488
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 122/261 (46%), Gaps = 12/261 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V Y++++ K+ F + ++ EM+ +G+T D +TY + A E
Sbjct: 157 GMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEA 216
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+++L M A D V+Y+++ + + K G L +A L++ +Q K V + YN ++
Sbjct: 217 EQMLRRM-AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT-YNTVI 274
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQAL 185
K GK + I + +++ VL + Y VI+ L K D L A+K+ +
Sbjct: 275 DGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGC 334
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D +ID C+ G LE+AE L+ K G +V ++ L +G + ++ +A
Sbjct: 335 NPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAER 394
Query: 246 AMKKV--------LAAYQTLV 258
M+++ L Y T+V
Sbjct: 395 VMEEMRNAGCPPNLVTYNTMV 415
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 8/220 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G VVY+S++ + K+G + + EM + + D TY T +
Sbjct: 220 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 279
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
IL M+ +V D V Y+TV NG K +L +A +L +++ A N
Sbjct: 280 LGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL----DRMCKAGCN 335
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
Y I+ K G+ ++ + + K+A N Y +IS L K ++ AE++
Sbjct: 336 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERV 395
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
EE + + N +++ C +G +++A+ LV K
Sbjct: 396 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK 435
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 108/272 (39%), Gaps = 46/272 (16%)
Query: 27 GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVI 86
G+ L+ EM+ G D +T+ ++A A+A D +G L M DPNV V
Sbjct: 4 GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNV----VT 59
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIWEL 145
Y + + + L++A+ +L++ E +G N YNV+
Sbjct: 60 YTALIAAFARAKKLEEAMKLLEEMRE--RGCPPNLVTYNVL------------------- 98
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+ +L KL + +A+ + ++ + N L+D +C+ G +
Sbjct: 99 ---------------VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNV 143
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE 265
+ A L+ KG +V ++ L G ++ + +A E ++++ A+ T P
Sbjct: 144 DDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVT-----PDAF 198
Query: 266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +A + I AE + + G P
Sbjct: 199 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 230
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 15/250 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +R +G V Y +++ + + E+ L+ EM E G + TY + A
Sbjct: 45 MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 104
Query: 61 AS-DHEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
S D + M+E PNV + + ++ +G+ K G +D A +L KG
Sbjct: 105 LSMVGAAQDVVKKMIEGGFAPNV----MTFNSLVDGFCKRGNVDDARKLL--GIMVAKGM 158
Query: 118 KVN----SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ N SA L K+ + +VL E+ V Y +I L K D +E A
Sbjct: 159 RPNVVTYSALIDGLCKSQKFLEAKEVLE--EMKASGVTPDAFTYSALIHGLCKADKIEEA 216
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E++ D + + +I +C++G L +A+ + + + + V ++ + G
Sbjct: 217 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 276
Query: 234 YRQNSQIHKA 243
+ +I +A
Sbjct: 277 LCKLGKIAEA 286
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 127/305 (41%), Gaps = 55/305 (18%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G TV YN++L ++ K G F + S++ EMEEN D TY ++AY A HE
Sbjct: 323 GYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEG 382
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI 126
++ M A + + V Y T+ N YG+VG +DKAL M + E G N A YN +
Sbjct: 383 AVVIDAM-ASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMEL--GCVPNVATYNAV 439
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS--SLLKLDDLESAEK----IFEEW 180
L + GK +++++I K LN N I+ ++L + + K +F E
Sbjct: 440 LGMLGKKSLSEEMMKILGHMK-----LNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREM 494
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ D N LI Y R G N++ K E +K+ +
Sbjct: 495 KNCGFEPDRDTFNTLISAYGRCG--------SNNDAAKMHEEMIKAGF------------ 534
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
P + + A L+ GD AE+ I + +KGF P++
Sbjct: 535 --------------------SPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSET 574
Query: 301 QDKLL 305
L+
Sbjct: 575 SYSLM 579
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 129/336 (38%), Gaps = 49/336 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + V YN ++ Y + G E+ ++ M GI + TY T ++AY
Sbjct: 351 LSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGR 410
Query: 61 ASDHEGIDKILTMME------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
D IDK L M + PNVA Y V GK L ++ + +L ++
Sbjct: 411 VGD---IDKALEMFDQMMELGCVPNVA----TYNAVLGMLGKKSLSEEMMKIL--GHMKL 461
Query: 115 KGAKVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLES 172
G N +N +L + GK G V +++ E+ + + + +IS+ +
Sbjct: 462 NGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNND 521
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A K+ EE N L++ R G + AE+++ + KG S+ +
Sbjct: 522 AAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVH 581
Query: 233 GYRQNSQIHKAVEAMKK-----------------VLA------------AYQTLVK--WK 261
Y + + K +E ++K VLA A+Q L K +K
Sbjct: 582 SYAKGGNV-KGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYK 640
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P + + L F A + L++D G P
Sbjct: 641 PDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQP 676
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 3/254 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR Y +++ + + GN + + + E++ G D YTY L AY+
Sbjct: 220 FRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSR 279
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
G ++ M + V D V Y + + +G+ GL A A+ +E +
Sbjct: 280 GEHPTGAKEVFQAM-VEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMK 338
Query: 121 SAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S + ++L+ Y K GK + R + E+ VK + +++S+ ++ E + E
Sbjct: 339 S-HMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLES 397
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S D N LI+ Y + G +EKAE + N + KG V SW L Y Q
Sbjct: 398 MVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKL 457
Query: 240 IHKAVEAMKKVLAA 253
K V +K++ A
Sbjct: 458 FRKCVSIFQKMVKA 471
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 118/301 (39%), Gaps = 49/301 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ G+ + M+ +Y K +K D L M + + YTY ++A+A
Sbjct: 185 FRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAR 244
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ ++I +++ P+V + G G + AM+ E ++
Sbjct: 245 EGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMV---EAGVRPD 301
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKI 176
+V +YN+++ +G+ G D +++ K+A K + ++SS K + AE++
Sbjct: 302 QV--SYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERL 359
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E E+ + DT + N L+ Y +G +++ E+L+
Sbjct: 360 VREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLL------------------------ 395
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
E+M +A KP + +L ++ + G I AE L KG
Sbjct: 396 --------ESMVSSVA--------KPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLT 439
Query: 297 P 297
P
Sbjct: 440 P 440
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 55/337 (16%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+D T +N +L Y + EK + L HEM+E S Y+ +
Sbjct: 109 MKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKE--------------SNYSPGT- 153
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVG--NGY----GKVGLLDKALAMLKKSEEQIKGA 117
++W+I++ + N Y GK G L +A + ++Q
Sbjct: 154 ------------------VEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILP 195
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
VN+ + +++ +YGK D ++ +KA+ N Y ++++ + + AE+I
Sbjct: 196 AVNT-FTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEI 254
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E +S D N L++ Y R A+ + G S+ L + +
Sbjct: 255 FAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGR 314
Query: 237 ---NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+ ++MK+ +KP+++S L + G + AE + + +
Sbjct: 315 AGLTADAQAVYDSMKE--------AGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENS 366
Query: 294 GFIP-TDLQDKLLDNVQNGKS--NLETLRELYGNSLA 327
G P T + + LL N +E+L E +S+A
Sbjct: 367 GVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVA 403
>gi|449450908|ref|XP_004143204.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
mitochondrial-like [Cucumis sativus]
gi|449517541|ref|XP_004165804.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
mitochondrial-like [Cucumis sativus]
Length = 527
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 143/298 (47%), Gaps = 11/298 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR++G + + +V+N ++ L+ + + ++ +M+ + + TY + A+
Sbjct: 181 MRKMREVGHSISHLVFNRLIILHSSFRRRKIIPKILSQMKADKVPLHVSTYNILMKIEAN 240
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ EG+ ++ + M + +PN V Y V + L A ++ E+ I G
Sbjct: 241 EHNIEGLMRVFSDMRRAKVEPNE----VSYCIVATAHAVAKLYTVVEAYVEALEKSIAGN 296
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S Y+V++ LYG K+ ++ R W + + + + + I + ++ L AE+++
Sbjct: 297 NW-STYDVLIILYGYLNKEKELERTWGIIQGFPHIPSKSFILAIEAFGRIGLLSRAEELW 355
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E +++ T N ++ VYCR+GL++KA + + G + + ++ +LA G +
Sbjct: 356 LEMKTKRGIKATDQFNSILSVYCRHGLIKKATEIFRKIEANGCKPNAITFRHLAFGCLKA 415
Query: 238 SQIHKAVEAM---KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+ +A++ + ++ + + K P +E+ + ++ + GDI E + L +
Sbjct: 416 GLVEEALKTLDLGSNTTSSTKIVRKSTPWLETTLSMIEILAERGDIENTEKLFKELKE 473
>gi|115471209|ref|NP_001059203.1| Os07g0222700 [Oryza sativa Japonica Group]
gi|34394024|dbj|BAC84055.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|113610739|dbj|BAF21117.1| Os07g0222700 [Oryza sativa Japonica Group]
gi|117380751|gb|ABK34463.1| DNA-binding protein [Oryza sativa Japonica Group]
Length = 411
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 135/309 (43%), Gaps = 15/309 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++++DL L T + N M+ LY + K+ S++ ME+ + +TY +
Sbjct: 69 FKEIKDLCLRLTVTLCNQMILLYKRIAP-GKVASVLMLMEKENVKPSAFTYRLLIDLKGR 127
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
++D GI+ +L M+A +P+ + V Y GL +KA A++K+ E Q+ +
Sbjct: 128 SNDLAGIEVVLNEMKAYGIEPSTSTQ----TMVARFYIHGGLTEKAEAVVKEMEAQLSNS 183
Query: 118 K-VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
K +L LY K +DV RIWE+ + + + + I + +L +E AE+
Sbjct: 184 KDGRHVIKSLLHLYAALNKPNDVARIWEM---CTEPMLEDFLSAIKAWGELGLIEKAEET 240
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FE + ++ N +++VY +N LL K + V G +W L Y
Sbjct: 241 FEAMANAPEKLSSKYYNAMLNVYAQNKLLSKGKQFVERMCRDGCPNGPLTWDALINLYVN 300
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ ++ KA + L + KP S + + GDI E + L + G+
Sbjct: 301 SGEVEKADSFL---LNVAEENPDRKPLFTSYFFLMKGYAKRGDIHNTEKIFDRLKNVGYA 357
Query: 297 PTDLQDKLL 305
P L +L
Sbjct: 358 PRPLHYAVL 366
>gi|226528511|ref|NP_001143788.1| uncharacterized protein LOC100276555 [Zea mays]
gi|195627038|gb|ACG35349.1| hypothetical protein [Zea mays]
Length = 422
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 18/223 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ L +VYN M+ LY G K++++ E++ ++ D +TY R SA A
Sbjct: 178 FERMKGASLPMDALVYNEMMTLYISVGELGKVEAVAEELKRQNVSPDLFTYNLRASAAAA 237
Query: 61 ASDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ D EG +L M D + + W +Y + + Y G L L + + A+
Sbjct: 238 SMDLEGFRAVLDEMSRDLKSSTEGGWALYRDLASVYVDAGQL---LGSVNSPPVEAGEAR 294
Query: 119 VNS----AYNVILTLYGKYGKKDDVLRIWE--------LYKKAVKVLNNGYRNVISSLLK 166
++ Y+ ++ L+ G+ + + IW + ++ + Y V+SS L
Sbjct: 295 ISQREWITYDFLVILHAGLGRPERIRDIWRSMVATSQSQSQSQQRMTSRNYVCVVSSYLA 354
Query: 167 LDDLESAEKIFEEWE-SQALCYDTRIPNFLIDVYCRNGLLEKA 208
LE A ++ ++W+ S+A +D N L+D R GL + A
Sbjct: 355 CGRLEDAGEVVDQWQRSKAPEFDVSACNRLLDALLRAGLADAA 397
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 128/282 (45%), Gaps = 7/282 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN M+ Y K GN E+ + + ++ E G+ D +TY + + Y D + K+ M
Sbjct: 221 YNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMP 280
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
+ V Y + +G +D+A+ + K ++ V + +I +L G K
Sbjct: 281 LK-GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERK 339
Query: 136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195
+ + + E+ + +K + Y +I SL E A ++ + + L + N L
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNAL 399
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ 255
I+ YC+ G++E A ++V + + + +++ L GY + S +HKA+ + K+L
Sbjct: 400 INGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLER-- 456
Query: 256 TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K P V + + +D G+ A + L+ND+G +P
Sbjct: 457 ---KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 11/255 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + + V YNS++ ++GNF+ L+ M + G+ D++TY + + +
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ E + +E +PNV V+Y + +GY K G +D+A ML+K K
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNV----VMYTALIDGYCKAGKVDEAHLMLEKMLS--KNC 563
Query: 118 KVNS-AYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
NS +N ++ GK K+ L ++ K ++ + +I LLK D + A
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
F++ S D I YCR G L AE+++ + G + ++ L GY
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYG 683
Query: 236 QNSQIHKAVEAMKKV 250
Q + A + +K++
Sbjct: 684 DLGQTNFAFDVLKRM 698
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 116/253 (45%), Gaps = 8/253 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+D T Y ++K + + +L+ EMEE GI + +TY + +
Sbjct: 313 KMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372
Query: 63 DHEGIDKIL-TMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E ++L M+E PNV + Y + NGY K G+++ A+ +++ E + K +
Sbjct: 373 KFEKARELLGQMLEKGLMPNV----ITYNALINGYCKRGMIEDAVDVVELMESR-KLSPN 427
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++ Y K + + ++ ++ V Y ++I + + +SA ++
Sbjct: 428 TRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L D +ID C++ +E+A +L + + KG +V + L GY + +
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547
Query: 240 IHKAVEAMKKVLA 252
+ +A ++K+L+
Sbjct: 548 VDEAHLMLEKMLS 560
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 10/212 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ Y ++ FEK L+ +M E G+ + TY ++ Y
Sbjct: 346 VKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCK 405
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
E ++ +ME+ PN Y + GY K + KA+ +L K E+
Sbjct: 406 RGMIEDAVDVVELMESRKLSPNTR----TYNELIKGYCKSN-VHKAMGVLNKMLERKVLP 460
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKI 176
V + YN ++ + G D R+ L V + Y ++I SL K +E A +
Sbjct: 461 DVVT-YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
F+ E + + + + LID YC+ G +++A
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 53/294 (18%), Positives = 109/294 (37%), Gaps = 31/294 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M G Y + ++ Y + G + +M +M ENG++ D +TY + + Y D
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGD 684
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+L M + + + LL+ K SE ++
Sbjct: 685 LGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKH------LLEMKYGKQKGSEPELCAMSNM 738
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ ++ L K + + +V Y +I + ++ +L AEK+F+
Sbjct: 739 MEFDTVVELLEK------------MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHM 786
Query: 181 E-SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ ++ + + N L+ C+ +A +V+ G ++S L G + +
Sbjct: 787 QRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGE 846
Query: 240 IHKAVEAMKKVLAA--YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ + +L Y+ + WK ++ + G G E F EL N
Sbjct: 847 KERGTSVFQNLLQCGYYEDELAWKIIIDGV----------GKQGLVEAFYELFN 890
>gi|125563762|gb|EAZ09142.1| hypothetical protein OsI_31412 [Oryza sativa Indica Group]
Length = 962
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 33/272 (12%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KMR G+ + Y++M+ LY + G+F K + ++ M + + + + RL+AY
Sbjct: 323 KMRKCGI-KCVNAYSAMVTLYTRLGHFAKSEEVITLMNNDEVVPNMENWLVRLNAYCQQG 381
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E + +L + D +AL+ V Y TV GYGKV + KA+ + +++K A +
Sbjct: 382 KMEEAELVLKSL-VDEGIALNVVAYNTVITGYGKVSDMQKAMEVF----DRLKSAGLAPD 436
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAV----KVLNNGYR-------NVISSLLKLDDLE 171
++ +G+ D YK+A+ K+ N+G++ +I+ L + DD E
Sbjct: 437 ETTYRSMIEGFGRADK-------YKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDSE 489
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A +I E+ + A C + I L+ Y G + K ++ K S L
Sbjct: 490 GATEILEDMRA-AGCQCSSIVTVLVRAYGSVGRMHKVLQILKACFYKKILFDATSCSILV 548
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
TG+ QNS + +A+ +++ KWK S
Sbjct: 549 TGFVQNSLVEEAMRVLRE--------KKWKDS 572
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M++ G + YN ML Y K G E+ +++ +ME G +D YTY ++ Y
Sbjct: 809 VQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMINIYGR 868
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
EG+ +L +++ +P D Y T+ YG G+ + A+ +++ E +IKG
Sbjct: 869 KGWIEGVANVLAELKSRGGEP----DLYSYNTLIKAYGIAGMPEDAVKLMQ--EMRIKG 921
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 4/233 (1%)
Query: 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP 78
ML+ Y K G EKL + + ++ + D Y ++ A + + +I M
Sbjct: 688 MLRTYQKCGLLEKLSDTYYWILKSQVELDEAMYNCIINCCGRAIPVDELSRIFDEMIQQG 747
Query: 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK-KD 137
++A + V + + YGK GL +KA + + +Q G +YN I+ + K G +
Sbjct: 748 HLA-NTVTLNVLLDIYGKAGLFNKAEKVFLMARKQ--GMADIISYNTIIAAHAKNGDFRS 804
Query: 138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
+ + + + V Y ++ + K LE + ++ E +D N +I+
Sbjct: 805 MIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMIN 864
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+Y R G +E N++ K +G E + S+ L Y AV+ M+++
Sbjct: 865 IYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPEDAVKLMQEM 917
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 7/188 (3%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G+A + YN+++ + K G+F + + M+E G Y L AY A
Sbjct: 779 RKQGMA-DIISYNTIIAAHAKNGDFRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQL 837
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAY 123
E +L ME D Y + N YG+ G ++ +L +E + +G + + +Y
Sbjct: 838 EEFAAVLQKME-RAGCEFDHYTYNIMINIYGRKGWIEGVANVL--AELKSRGGEPDLYSY 894
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N ++ YG G +D +++ E+ K + Y N+I++L + ++ A K + W
Sbjct: 895 NTLIKAYGIAGMPEDAVKLMQEMRIKGIAADRVTYTNLIAALQRNENFLEAVK-WSLWMK 953
Query: 183 QALCYDTR 190
Q TR
Sbjct: 954 QTGVAATR 961
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG-IDKIL 71
TV N +L +Y K G F K + + + G+ D +Y T ++A+A D I +
Sbjct: 752 TVTLNVLLDIYGKAGLFNKAEKVFLMARKQGMA-DIISYNTIIAAHAKNGDFRSMIYFVQ 810
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLY 130
M EA V+L+ Y + + YGK G L++ A+L+K E G + + YN+++ +Y
Sbjct: 811 RMQEAGFPVSLE--AYNCMLDAYGKAGQLEEFAAVLQKMER--AGCEFDHYTYNIMINIY 866
Query: 131 GKYG 134
G+ G
Sbjct: 867 GRKG 870
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 114/262 (43%), Gaps = 30/262 (11%)
Query: 50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD---KALAM 106
Y L A A D E ++L M AD ALD + + K L+D K L M
Sbjct: 229 AYHLALQAIAWKEDWEAAGQLLHEMVADSGCALDAQAFNGLIYVCAKRRLVDWGTKWLHM 288
Query: 107 LKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLL 165
+ + + Q + V +++ LY + G + ++ K +K +N Y +++
Sbjct: 289 MLERDVQPNVSTVG----MLMGLYQRIGNLPEAEFTFAKMRKCGIKCVN-AYSAMVTLYT 343
Query: 166 KLDDLESAEKIFEEWESQALCYDTRIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGR 220
+L +E++ + D +PN ++ YC+ G +E+AE ++ +G
Sbjct: 344 RLGHFAKSEEVITLMNN-----DEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGI 398
Query: 221 EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA--------YQTLVKWKPSVESLAACLD 272
++V ++ + TGY + S + KA+E ++ +A Y+++++ + +
Sbjct: 399 ALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAIL 458
Query: 273 YF---KDEGDIGGAENFIELLN 291
Y+ ++ G A NF ++N
Sbjct: 459 YYRKLRNSGFKPNASNFYTMIN 480
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 108/257 (42%), Gaps = 13/257 (5%)
Query: 37 HEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96
++M ++ + YC+ + ++ + + ++A V LD + Y+ + Y K
Sbjct: 600 NQMPKSATHPNLRIYCSMIDVFSIMERFTDAEALYLELKASSCV-LDMIAYSVIVRMYTK 658
Query: 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG--KKDDVLRIWELYKKAVKVLN 154
G + A +L+ E+Q + + +L Y K G +K W L K V++
Sbjct: 659 AGRPEDACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLSDTYYWIL-KSQVELDE 717
Query: 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
Y +I+ + ++ +IF+E Q +T N L+D+Y + GL KAE +
Sbjct: 718 AMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFLM 777
Query: 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF 274
+ +G + S+ + + +N + ++++ A + S+E+ LD +
Sbjct: 778 ARKQGMA-DIISYNTIIAAHAKNGDFRSMIYFVQRMQEA-----GFPVSLEAYNCMLDAY 831
Query: 275 KDEGDIGGAENFIELLN 291
G G E F +L
Sbjct: 832 ---GKAGQLEEFAAVLQ 845
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 7/246 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M++ G+A YNS++ K ++ S + EM ENG+ + +TY +S Y +
Sbjct: 475 LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE 534
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ--IKGAK 118
AS+ DK + M + V + V+ + N Y K + +A + + +Q + AK
Sbjct: 535 ASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAK 593
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y V++ K K DD I+ E+ K + Y +I+ KL +++ A IF
Sbjct: 594 ---TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + L + I N L+ +CR+G +EKA+ L++ +KG + ++ + GY ++
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710
Query: 238 SQIHKA 243
+ +A
Sbjct: 711 GDLAEA 716
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 128/306 (41%), Gaps = 19/306 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G+ V+ ++ Y K + S M + GI D TY ++
Sbjct: 545 VKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFK 604
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++I M +A D Y + NG+ K+G + KA ++ + E+ G N
Sbjct: 605 NDKVDDAEEIFREMRGK-GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE--GLTPN 661
Query: 121 SA-YNVILTLYGKYGKKD------DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
YN++L + + G+ + D + + L+ AV Y +I K DL A
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT-----YCTIIDGYCKSGDLAEA 716
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++F+E + + L D+ + L+D CR +E+A + K KG + L
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALINW 775
Query: 234 YRQNSQIHKAVEAMKKVL-AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+ + E + +++ ++ KP+ + +DY EG++ A+ + +
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRF--GKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 293 KGFIPT 298
+PT
Sbjct: 834 ANLMPT 839
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 20/264 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G+A Y ++ + K GN +K S+ EM E G+T + Y L +
Sbjct: 615 FREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCR 674
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + E ++L M PN V Y T+ +GY K G L +A + E ++KG
Sbjct: 675 SGEIEKAKELLDEMSVKGLHPNA----VTYCTIIDGYCKSGDLAEAFRLF--DEMKLKGL 728
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELY---KKAVKVLNNGYRNVISSLLKLDDLESAE 174
+S V TL + +DV R ++ KK + +I+ + K E
Sbjct: 729 VPDSF--VYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786
Query: 175 KIFEEWESQALCYDTRIPN-----FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
++ + + PN +ID C+ G LE A+ L + + V ++
Sbjct: 787 EVLNRLMDGSFDRFGK-PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTS 845
Query: 230 LATGYRQNSQIHKAVEAMKKVLAA 253
L GY + + + + +AA
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAA 869
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 14/294 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL Y S+++ Y + N + L+ EM++ I YTY T + + D +G
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436
Query: 68 DKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
I+ M A PNV VIY T+ + + A+ +LK+ +EQ + YN
Sbjct: 437 YNIVKEMIASGCRPNV----VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI-FCYN 491
Query: 125 VILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K + D+ + E+ + +K Y IS ++ + SA+K +E
Sbjct: 492 SLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ + + LI+ YC+ + +A + +G K++ L G +N ++ A
Sbjct: 552 GVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDA 611
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
E +++ P V S ++ F G++ A + + + ++G P
Sbjct: 612 EEIFREMRGK-----GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 4/209 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ L V+YN + + K G + HE+E NG+ D TY + +
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A+ + ++ +E + V + Y T+ GYG G D+A ++L++ ++ KG+ +
Sbjct: 286 ANRLDEAVEMFEHLEKNRRVPCTYA-YNTMIMGYGSAGKFDEAYSLLER--QRAKGSIPS 342
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN ILT K GK D+ L+++E KK + Y +I L + L++A ++ +
Sbjct: 343 VIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDS 402
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ L + R N ++D C++ L++A
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 146/350 (41%), Gaps = 36/350 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM D ++VY S++K ++ G E + +M + D T + A
Sbjct: 471 EKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKA 530
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E + ++A V D Y+ + +G K G ++ + +EQ G +++
Sbjct: 531 GEPEKGRAMFEEIKARRFVP-DARSYSILIHGLIKAGFANETYELFYSMKEQ--GCVLDT 587
Query: 122 -AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN+++ + K GK + ++ E K K + Y +VI L K+D L+ A +FEE
Sbjct: 588 RAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 647
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S+ + + I + LID + + G +++A ++ KG ++ +W L + +
Sbjct: 648 AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEE 707
Query: 240 IHKAV---EAMK-------------------KVLAAYQTLVKW--------KPSVESLAA 269
I++A+ ++MK KV + V W KPS S
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTT 767
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIP-TDLQDKLLDNVQNGKSNLETL 318
+ G+I A + G +P + + +++ + NG ++
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAF 817
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKIL 71
V+Y+S++ + K G ++ ++ E+ + G+T + YT+ + L A A + +E +
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQ 716
Query: 72 TMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILT 128
+M E PN V Y + NG KV +KA ++ ++Q G K ++ +Y +++
Sbjct: 717 SMKELKCTPN----QVTYGILINGLCKVRKFNKAFVFWQEMQKQ--GMKPSTISYTTMIS 770
Query: 129 LYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWESQALCY 187
K G + +++ +K V ++ Y +I L + A +FEE + L
Sbjct: 771 GLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPI 830
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSW 227
+ L+D +N LE+A + + G+ H +SW
Sbjct: 831 HNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAARSW 871
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 5/236 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMM 74
YNS+L + + NF+ LD ++ EM G T + A+ EG D + M
Sbjct: 101 YNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMR 160
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
+ A Y T+ + V D L + ++ +E V+ + ++ + K G
Sbjct: 161 KFKFRPAFS--AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVH-LFTTLIRGFAKEG 217
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ D L + E+ ++ Y I S K+ ++ A K F E E+ L D
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYT 277
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
+I V C+ L++A + H + R ++ + GY + +A +++
Sbjct: 278 SMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 115/295 (38%), Gaps = 8/295 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ GL N M+ K+ ++ ++ EM+ T D T+C+ +
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR 462
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ K+ M D + + ++Y ++ + G + + K Q +
Sbjct: 463 VDDAYKVYEKM-LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ-LL 520
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWES 182
N + K G+ + ++E K V + Y +I L+K ++F +
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKE 580
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
Q DTR N +ID +C+ G + KA L+ K KG E V ++ + G + ++ +
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDE 640
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A ++ + L +V ++ +D F G I A +E L KG P
Sbjct: 641 AYMLFEEAKSKRIEL-----NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 4/292 (1%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T + +N+++ + N E DSL+ +M +G+ D TY T + A +
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEA 206
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+++L M+A A D V Y++ G K G + A +L++ + V + YN IL
Sbjct: 207 EQLLERMKAS-GCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVT-YNTIL 264
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQAL 185
K GK D L + E + N GY V+ L KL + A + E
Sbjct: 265 DGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGC 324
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D + L++ C+ G +E+A V ++G + + ++ L G ++ +A
Sbjct: 325 RPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++++ + PSV + A + G I A F + + +G P
Sbjct: 385 MVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDP 436
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/251 (20%), Positives = 107/251 (42%), Gaps = 8/251 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G +V +N+++ + K G + L+ M I + +Y L
Sbjct: 1 MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60
Query: 64 -HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
HE + + M+ D V Y+T+ +GY K G ++++ +LK E +G + ++
Sbjct: 61 WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLK--EVISRGLRPDAL 118
Query: 123 Y--NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
V+ +L + + + E+ + + +IS + +LE A+ + ++
Sbjct: 119 MYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKM 178
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + D N L+D C+ G L++AE L+ K G V ++ G ++ ++
Sbjct: 179 AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKV 238
Query: 241 ---HKAVEAMK 248
H+ +E M+
Sbjct: 239 LDAHQVLEQMR 249
>gi|115479233|ref|NP_001063210.1| Os09g0423300 [Oryza sativa Japonica Group]
gi|50725891|dbj|BAD33419.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|50726131|dbj|BAD33652.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113631443|dbj|BAF25124.1| Os09g0423300 [Oryza sativa Japonica Group]
gi|125605742|gb|EAZ44778.1| hypothetical protein OsJ_29409 [Oryza sativa Japonica Group]
Length = 962
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 33/272 (12%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KMR G+ + Y++M+ LY + G+F K + ++ M + + + + RL+AY
Sbjct: 323 KMRKCGI-KCVNAYSAMVTLYTRLGHFAKSEEVITLMNNDEVVPNMENWLVRLNAYCQQG 381
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E + +L + D +AL+ V Y TV GYGKV + KA+ + +++K A +
Sbjct: 382 KMEEAELVLKSL-VDEGIALNVVAYNTVITGYGKVSDMQKAMEVF----DRLKSAGLAPD 436
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAV----KVLNNGYR-------NVISSLLKLDDLE 171
++ +G+ D YK+A+ K+ N+G++ +I+ L + DD E
Sbjct: 437 ETTYRSMIEGFGRADK-------YKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDSE 489
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A +I E+ + A C + I L+ Y G + K ++ K S L
Sbjct: 490 GATEILEDMRA-AGCQCSSIVTVLVRAYGSVGRMHKVLQILKACFYKKILFDATSCSILV 548
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
TG+ QNS + +A+ +++ KWK S
Sbjct: 549 TGFVQNSLVEEAMRVLRE--------KKWKDS 572
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M++ G + YN ML Y K G E+ +++ +ME G +D YTY ++ Y
Sbjct: 809 VQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMINIYGR 868
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
EG+ +L +++ +P D Y T+ YG G+ + A+ +++ E +IKG
Sbjct: 869 KGWIEGVANVLAELKSRGGEP----DLYSYNTLIKAYGIAGMPEDAVKLMQ--EMRIKG 921
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 4/233 (1%)
Query: 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP 78
ML+ Y K G EKL + + ++ + D Y ++ A + + +I M
Sbjct: 688 MLRTYQKCGLLEKLSDTYYWILKSQVELDEAMYNCIINCCGRAIPVDELSRIFDEMIQQG 747
Query: 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK-KD 137
++A + V + + YGK GL +KA + + +Q G +YN I+ + K G +
Sbjct: 748 HLA-NTVTLNVLLDIYGKAGLFNKAEKVFLMARKQ--GMADIISYNTIIAAHAKNGDFRS 804
Query: 138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
+ + + + V Y ++ + K LE + ++ E +D N +I+
Sbjct: 805 MIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMIN 864
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+Y R G +E N++ K +G E + S+ L Y AV+ M+++
Sbjct: 865 IYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPEDAVKLMQEM 917
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 7/188 (3%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G+A + YN+++ + K G+F + + M+E G Y L AY A
Sbjct: 779 RKQGMA-DIISYNTIIAAHAKNGDFRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQL 837
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAY 123
E +L ME D Y + N YG+ G ++ +L +E + +G + + +Y
Sbjct: 838 EEFAAVLQKME-RAGCEFDHYTYNIMINIYGRKGWIEGVANVL--AELKSRGGEPDLYSY 894
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N ++ YG G +D +++ E+ K + Y N+I++L + ++ A K + W
Sbjct: 895 NTLIKAYGIAGMPEDAVKLMQEMRIKGIAADRVTYTNLIAALQRNENFLEAVK-WSLWMK 953
Query: 183 QALCYDTR 190
Q TR
Sbjct: 954 QTGVAATR 961
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG-IDKIL 71
TV N +L +Y K G F K + + + G+ D +Y T ++A+A D I +
Sbjct: 752 TVTLNVLLDIYGKAGLFNKAEKVFLMARKQGMA-DIISYNTIIAAHAKNGDFRSMIYFVQ 810
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLY 130
M EA V+L+ Y + + YGK G L++ A+L+K E G + + YN+++ +Y
Sbjct: 811 RMQEAGFPVSLE--AYNCMLDAYGKAGQLEEFAAVLQKMER--AGCEFDHYTYNIMINIY 866
Query: 131 GKYG 134
G+ G
Sbjct: 867 GRKG 870
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 113/257 (43%), Gaps = 30/257 (11%)
Query: 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD---KALAMLKKSE 111
L A A D E ++L M AD ALD + + K L+D K L M+ + +
Sbjct: 234 LQAIAWKEDWEAAGQLLHEMVADSGCALDAQAFNGLIYVCAKRRLVDWGTKWLHMMLERD 293
Query: 112 EQIKGAKVNSAYNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDL 170
Q + V +++ LY + G + ++ K +K +N Y +++ +L
Sbjct: 294 VQPNVSTVG----MLMGLYQRIGNLPEAEFTFAKMRKCGIKCVN-AYSAMVTLYTRLGHF 348
Query: 171 ESAEKIFEEWESQALCYDTRIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225
+E++ + D +PN ++ YC+ G +E+AE ++ +G ++V
Sbjct: 349 AKSEEVITLMNN-----DEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVV 403
Query: 226 SWYYLATGYRQNSQIHKAVEAMKKVLAA--------YQTLVKWKPSVESLAACLDYF--- 274
++ + TGY + S + KA+E ++ +A Y+++++ + + Y+
Sbjct: 404 AYNTVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKL 463
Query: 275 KDEGDIGGAENFIELLN 291
++ G A NF ++N
Sbjct: 464 RNSGFKPNASNFYTMIN 480
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 108/257 (42%), Gaps = 13/257 (5%)
Query: 37 HEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96
++M ++ + YC+ + ++ + + ++A V LD + Y+ + Y K
Sbjct: 600 NQMPKSATHPNLRIYCSMIDVFSIMERFTDAEALYLELKASSCV-LDMIAYSVIVRMYTK 658
Query: 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG--KKDDVLRIWELYKKAVKVLN 154
G + A +L+ E+Q + + +L Y K G +K W L K V++
Sbjct: 659 AGRPEDACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLSDTYYWIL-KSQVELDE 717
Query: 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
Y +I+ + ++ +IF+E Q +T N L+D+Y + GL KAE +
Sbjct: 718 AMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFLM 777
Query: 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF 274
+ +G + S+ + + +N + ++++ A + S+E+ LD +
Sbjct: 778 ARKQGMA-DIISYNTIIAAHAKNGDFRSMIYFVQRMQEA-----GFPVSLEAYNCMLDAY 831
Query: 275 KDEGDIGGAENFIELLN 291
G G E F +L
Sbjct: 832 ---GKAGQLEEFAAVLQ 845
>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 19/286 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR++GL + S+L+ + +TGNF + +S+ EM + G TY ++A A
Sbjct: 132 EMREVGLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINALCKAE 191
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
++I ++ D +Y + + YGK G + A+ + Q+KGA V
Sbjct: 192 RFNDAERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFR----QMKGAGVPMT 247
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N ++ + LR + K V+ Y +I++ K +E A +F E
Sbjct: 248 VVTFNSLMAFQKTVADAEACLRHMQAAKIKPDVIT--YTGLINAYSKARRVEEAHVVFRE 305
Query: 180 WESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L +RI N L+D Y + +E AE+L ++S+ L Y
Sbjct: 306 MVASGL-RPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTG 364
Query: 239 QIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKD 276
+ KA +K++ + Y TL++ SV + A L F+D
Sbjct: 365 NMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFED 410
>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42310, mitochondrial; Flags: Precursor
gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 709
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 138/302 (45%), Gaps = 10/302 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++R G+ T YN++LK Y KTG + +S++ EME+ G++ D +TY + AY +
Sbjct: 327 FEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 386
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L MEA +V + +++ + G+ G K +LK E + G K +
Sbjct: 387 AGRWESARIVLKEMEAG-DVQPNSFVFSRLLAGFRDRGEWQKTFQVLK--EMKSIGVKPD 443
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ +GK+ D + ++ + + ++ + +I K AE++FE
Sbjct: 444 RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFE 503
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + N +I+ Y + + L+ K +G +V + L Y ++
Sbjct: 504 AMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSG 563
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ + A+E ++++ + V KPS A ++ + G A N ++ G P+
Sbjct: 564 RFNDAIECLEEMKS-----VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPS 618
Query: 299 DL 300
L
Sbjct: 619 LL 620
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 9/216 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ T S++ +G + ++L E+ ++GI Y L Y +
Sbjct: 299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 358
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ +++ ME V+ D Y+ + + Y G + A +LK E + + NS ++ +
Sbjct: 359 ESMVSEMEKR-GVSPDEHTYSLLIDAYVNAGRWESARIVLK--EMEAGDVQPNSFVFSRL 415
Query: 127 LTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L + G++ K VL+ E+ VK Y VI + K + L+ A F+ S+
Sbjct: 416 LAGFRDRGEWQKTFQVLK--EMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE 473
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ D N LID +C++G AE + + +G
Sbjct: 474 GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 509
>gi|125557709|gb|EAZ03245.1| hypothetical protein OsI_25393 [Oryza sativa Indica Group]
Length = 610
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 135/309 (43%), Gaps = 15/309 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++++DL L T + N M+ LY + K+ S++ ME+ + +TY +
Sbjct: 268 FKEIKDLCLRLTVTLCNQMILLYKRIAP-GKVASVLMLMEKENVKPSAFTYRLLIDLKGR 326
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
++D GI+ ++ M+A +P+ + V Y GL +KA A++K+ E Q+ +
Sbjct: 327 SNDLAGIEVVINEMKAYGIEPSTSTQ----TMVARFYIHGGLTEKAEAVVKEMEAQLSNS 382
Query: 118 K-VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
K +L LY K +DV RIWE+ + + + + I + +L +E AE+
Sbjct: 383 KDGRHVIKSLLHLYAALNKPNDVARIWEM---CTEPMLEDFLSAIKAWGELGLIEKAEET 439
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FE + ++ N +++VY +N LL K + V G +W L Y
Sbjct: 440 FEAMANAPEKLSSKYYNAMLNVYAQNKLLSKGKQFVERMCRDGCPNGPLTWDALINLYVN 499
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ ++ KA + L + KP S + + GDI E + L + G+
Sbjct: 500 SGEVEKADSFL---LNVAEENPDRKPLFTSYFFLMKGYAKRGDIHNTEKIFDRLKNVGYA 556
Query: 297 PTDLQDKLL 305
P L +L
Sbjct: 557 PRPLHYAVL 565
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 127/283 (44%), Gaps = 10/283 (3%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
N+M+ Y K GN + + + ++ + G++ D +TY + + Y +D K+ MM
Sbjct: 218 NTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMM-- 275
Query: 77 DPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
PN + V Y T+ +G + G +D+ +++ KK E V + +I L+G
Sbjct: 276 -PNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDR 334
Query: 135 KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
+ + E+ +++ + + Y ++ ++ K L+ + +I E + L N
Sbjct: 335 NLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNA 394
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
LI YC G +E A ++ + + +++ L G+ + +HKA+ + K+L +
Sbjct: 395 LIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLES- 453
Query: 255 QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K PS+ + + + G A ++LL + G +P
Sbjct: 454 ----KLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVP 492
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 122/256 (47%), Gaps = 7/256 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + L + V YNS++ + K G+F+ L+ ++ENG+ D++TY +
Sbjct: 447 LSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCK 506
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--SEEQIKGAK 118
+ E + ++ + + + V+Y + +G+ K G +D+A+++L++ SE+ + +
Sbjct: 507 SKRMEEACDLFNSLK-EKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNS- 564
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S YN ++ K GK + L + E + K VK Y +I +L+ D + A ++F
Sbjct: 565 --STYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVF 622
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ S D I YC +G +++AE ++ G ++ L + Y +
Sbjct: 623 NQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERL 682
Query: 238 SQIHKAVEAMKKVLAA 253
+ A +K++L A
Sbjct: 683 GLAYDAFNVLKRMLDA 698
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 128/308 (41%), Gaps = 12/308 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + GL + V YN++++ Y + G E ++ ME N + TY + ++
Sbjct: 377 LNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSK 436
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
H+ + + M+E+ +L V Y ++ + K G D A +L +E G
Sbjct: 437 RKHVHKAMTLLSKMLESKLTPSL--VTYNSLIHVQCKAGHFDSAYKLLDLLKEN--GLVP 492
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ Y+V + K + ++ ++ L +K +K Y +I K ++ A +
Sbjct: 493 DQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLL 552
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E S+ ++ N LI C+ G +++ ++V + G + V ++ L +
Sbjct: 553 ERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLRE 612
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A ++++ KP V + A + + G++ AE + + + G +P
Sbjct: 613 GDFDHANRVFNQMVS-----FGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMP 667
Query: 298 TDLQDKLL 305
L LL
Sbjct: 668 DSLTYTLL 675
>gi|449523950|ref|XP_004168986.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 191
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QK++++G A+T++ YN + LY++ G FE+LDS ++E + +D++TY TRLSAYA
Sbjct: 120 LQKIKEMGFAKTSLPYNITMNLYHQIGEFERLDS---PLKETDVDHDQFTYTTRLSAYAT 176
Query: 61 ASDHEGIDKILTMME 75
A D GI+KI+ ME
Sbjct: 177 AFDFTGIEKIMEQME 191
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 128/282 (45%), Gaps = 7/282 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN M+ Y K GN E+ + + + E G+ D +TY + + Y D + K+ M
Sbjct: 221 YNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMP 280
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
+ V Y + +G +D+A+ + K ++ V + +I L G K
Sbjct: 281 LK-GCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERK 339
Query: 136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195
+ + + E+ +K +K + Y +I SL LE A ++ + + L + N L
Sbjct: 340 SEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNAL 399
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ 255
I+ YC+ G++E A ++V + + + +++ L GY + + +HKA+ + K+L
Sbjct: 400 INGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLER-- 456
Query: 256 TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K P V + + +D G+ A + L+ND+G +P
Sbjct: 457 ---KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 116/255 (45%), Gaps = 11/255 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + + V YNS++ ++GNF+ L+ M + G+ D +TY + + +
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCK 509
Query: 61 ASD-HEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ E D ++ + D PNV V+Y + +GY K G +++A ML+K K
Sbjct: 510 SKRVEEACDLFDSLEQKDVIPNV----VMYTALIDGYCKAGKVNEAHLMLEKMLS--KNC 563
Query: 118 KVNS-AYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
NS +N ++ GK K+ L ++ K ++ + +I LLK D + A +
Sbjct: 564 LPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYR 623
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
F++ S D I YCR G L+ AE++V K G + ++ L GY
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYG 683
Query: 236 QNSQIHKAVEAMKKV 250
+ + A +K++
Sbjct: 684 DLGRTNSAFVVLKRM 698
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 117/254 (46%), Gaps = 10/254 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+D T Y ++K + + +L+ EMEE GI + +TY + +
Sbjct: 313 KMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQC 372
Query: 63 DHEGIDKIL-TMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E ++L M+E PNV + Y + NGY K G+++ AL +++ E + +
Sbjct: 373 KLEKARELLGQMLEKGLMPNV----ITYNALINGYCKRGMIEDALDVVELMES--RNLRP 426
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N+ YN ++ Y K + + ++ ++ V Y ++I + + +SA ++
Sbjct: 427 NTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLS 486
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L D +ID C++ +E+A +L + + K +V + L GY +
Sbjct: 487 LMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAG 546
Query: 239 QIHKAVEAMKKVLA 252
++++A ++K+L+
Sbjct: 547 KVNEAHLMLEKMLS 560
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 60/311 (19%), Positives = 121/311 (38%), Gaps = 32/311 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM + L T ++ K G+F+ +M +G D +TY T + Y
Sbjct: 591 EKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCRE 650
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + ++ M+ + V+ D Y+++ GYG +G + A +LK+ + ++
Sbjct: 651 GRLQDAEDMVAKMKEN-GVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHT 709
Query: 122 AYNVILTLY-GKYGKK----------------DDVLRIWE-LYKKAVKVLNNGYRNVISS 163
++I L KYGK D V+ + E + + V Y ++
Sbjct: 710 FLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLG 769
Query: 164 LLKLDDLESAEKIFEEWES-QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
+ ++ +L AEK+F+ + + + + N L+ C+ +A +V+ G
Sbjct: 770 ICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLP 829
Query: 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAA--YQTLVKWKPSVESLAACLDYFKDEGDI 280
++S L + + + + +L Y + WK ++ + G
Sbjct: 830 QLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGV----------GKQ 879
Query: 281 GGAENFIELLN 291
G E F EL N
Sbjct: 880 GLVEAFYELFN 890
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 4/209 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ Y ++ EK L+ +M E G+ + TY ++ Y
Sbjct: 346 VKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCK 405
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++ +ME+ N+ + Y + GY K + KA+ +L K E+ V
Sbjct: 406 RGMIEDALDVVELMESR-NLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVV 463
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
+ YN ++ + G D R+ L V + Y ++I SL K +E A +F+
Sbjct: 464 T-YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDS 522
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E + + + + LID YC+ G + +A
Sbjct: 523 LEQKDVIPNVVMYTALIDGYCKAGKVNEA 551
>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
Length = 680
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 138/302 (45%), Gaps = 10/302 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++R G+ T YN++LK Y KTG + +S++ EME+ G++ D +TY + AY +
Sbjct: 298 FEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 357
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L MEA +V + +++ + G+ G K +LK E + G K +
Sbjct: 358 AGRWESARIVLKEMEAG-DVQPNSFVFSRLLAGFRDRGEWQKTFQVLK--EMKSIGVKPD 414
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ +GK+ D + ++ + + ++ + +I K AE++FE
Sbjct: 415 RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFE 474
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + N +I+ Y + + L+ K +G +V + L Y ++
Sbjct: 475 AMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSG 534
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ + A+E ++++ + V KPS A ++ + G A N ++ G P+
Sbjct: 535 RFNDAIECLEEMKS-----VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPS 589
Query: 299 DL 300
L
Sbjct: 590 LL 591
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 9/216 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ T S++ +G + ++L E+ ++GI Y L Y +
Sbjct: 270 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 329
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ +++ ME V+ D Y+ + + Y G + A +LK E + + NS ++ +
Sbjct: 330 ESMVSEMEKR-GVSPDEHTYSLLIDAYVNAGRWESARIVLK--EMEAGDVQPNSFVFSRL 386
Query: 127 LTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L + G++ K VL+ E+ VK Y VI + K + L+ A F+ S+
Sbjct: 387 LAGFRDRGEWQKTFQVLK--EMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE 444
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ D N LID +C++G AE + + +G
Sbjct: 445 GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 480
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 151/322 (46%), Gaps = 8/322 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M +L + T +L K G+ E LM E+ G+ + TY + Y
Sbjct: 213 FRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK 272
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G+ +ILT+ME + VA + V Y + +G+ +G +++A + ++ E+ A V
Sbjct: 273 RLDLGGVAEILTLMEKE-GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADV- 330
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y I++ + G L ++ E+ K + + Y +I + K +E+A+ + E
Sbjct: 331 YVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNE 390
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + + I N LID YC +G++++A L + KG E V ++ +A+G +
Sbjct: 391 MQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGL---CK 447
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+++ EA + + + V P+ S +D + EG+ A+ + +KG +P
Sbjct: 448 LNRKDEAKGLLFSMVERGV--SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNI 505
Query: 300 LQDKLLDNVQNGKSNLETLREL 321
+ +L + + + N++ +L
Sbjct: 506 ITYNVLIDGYSKRGNMKEAHKL 527
>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g39230, mitochondrial; AltName: Full=Protein LATERAL
ORGAN JUNCTION; Flags: Precursor
gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
Length = 867
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 137/316 (43%), Gaps = 23/316 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M G+ V YN+M+ + + N + S+ EM E G+ + +TY + +
Sbjct: 472 LKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFK 531
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++ M A N + VIY T+ NG KVG KA ML+ ++ + +
Sbjct: 532 NKDEQNAWDVINQMNAS-NFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSC 590
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
++YN I+ + K G D + + + K N + ++I+ K + ++ A ++ E
Sbjct: 591 TSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHE 650
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S L D LID +C+ ++ A L + G +V + L +G+R +
Sbjct: 651 MKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGK 710
Query: 240 IHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ A++ KK+ L Y T++ D +G+I A + L
Sbjct: 711 MDAAIDLYKKMVNDGISCDLFTYTTMI-------------DGLLKDGNINLASDLYSELL 757
Query: 292 DKGFIPTDLQDKLLDN 307
D G +P ++ +L N
Sbjct: 758 DLGIVPDEILHMVLVN 773
>gi|297844450|ref|XP_002890106.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335948|gb|EFH66365.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 594
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 141/297 (47%), Gaps = 17/297 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG +T N ML LY + +K+ ++ ME+ + + TY + ++
Sbjct: 252 KMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLMEKENLKPNLNTYKILIDTKGLSN 310
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKVNS 121
D G+++I+ M+++ V D A + Y GL +KA +LK+ E E ++ +
Sbjct: 311 DITGMEQIVETMKSE-GVEPDLRARALIARNYASAGLKEKAEKVLKEMEGESLEENR--H 367
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKIFE 178
Y +L++YG + D+V RIW++ ++ + Y ++++L K+D ++ AE +FE
Sbjct: 368 VYKDLLSVYGFLQRADEVTRIWKICEEKPR-----YNESLAAILAFGKIDKVKEAEAVFE 422
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + + + + L+ VY + ++ + ++LV G I + + Y +
Sbjct: 423 KMLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMLDSGCNIGALTLDAVIKLYLEAG 482
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ KA ++ K + + Q KP + S + + GD+ E + + G+
Sbjct: 483 EVEKAESSLSKAIQSKQI----KPLMSSFMYVMGEYVRRGDVHNTEKIFQRMKQFGY 535
>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 151/322 (46%), Gaps = 8/322 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M +L + T +L K G+ E LM E+ G+ + TY + Y
Sbjct: 217 FRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK 276
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G+ +ILT+ME + VA + V Y + +G+ +G +++A + ++ E+ A V
Sbjct: 277 RLDLGGVAEILTLMEKE-GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADV- 334
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y I++ + G L ++ E+ K + + Y +I + K +E+A+ + E
Sbjct: 335 YVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNE 394
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + + I N LID YC +G++++A L + KG E V ++ +A+G +
Sbjct: 395 MQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGL---CK 451
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+++ EA + + + V P+ S +D + EG+ A+ + +KG +P
Sbjct: 452 LNRKDEAKGLLFSMVERGV--SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNI 509
Query: 300 LQDKLLDNVQNGKSNLETLREL 321
+ +L + + + N++ +L
Sbjct: 510 ITYNVLIDGYSKRGNMKEAHKL 531
>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 927
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 138/322 (42%), Gaps = 10/322 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
QKM D GLA T V YNSM+ + + GN + S+ +M + G+ + TY + Y
Sbjct: 477 QKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKN 536
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKVN 120
D E + M D N+ Y NG KVG +A MLKK E KG V
Sbjct: 537 GDTEYAFYVFDRM-VDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVE--KGFVPVC 593
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN I+ + K G L + E+ + V Y +I+ K ++ + A K+ E
Sbjct: 594 LTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNE 653
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
++ L D LID +C+ +E A L + G + + L +GYR +
Sbjct: 654 MRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNN 713
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ A+ K++L + +++ +D EG + A + ++ KG IP
Sbjct: 714 MEAALNLQKRMLGEGISC-----DLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDI 768
Query: 300 LQDKLLDNVQNGKSNLETLREL 321
+ +L N GK LE +++
Sbjct: 769 IIYTVLINGLCGKGQLENAQKI 790
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 109/253 (43%), Gaps = 5/253 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K + G + YNS++ + K G+ + EM E+G++ + TY T ++ +
Sbjct: 581 LKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCK 640
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
++ + K+ M + + LD Y + +G+ K ++ A + SE G N
Sbjct: 641 NNNTDLALKMRNEMR-NKGLELDIAAYGALIDGFCKKQDIETASWLF--SELLDGGLSPN 697
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S YN +++ Y + L + + + + + Y +I LLK L A ++
Sbjct: 698 SVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYS 757
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E ++ + D I LI+ C G LE A+ ++ + +V + L G+ +
Sbjct: 758 EMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAG 817
Query: 239 QIHKAVEAMKKVL 251
+ +A ++L
Sbjct: 818 NLQEAFRLHNEML 830
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 140/335 (41%), Gaps = 47/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ ++ G V YN++L+++ K GN+ + ++ EME++G D TY YA
Sbjct: 267 FEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYAR 326
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAM---LKKS---- 110
A +E K L M + PN Y TV YG +G +D+ALA+ +KKS
Sbjct: 327 AGFYEEAAKCLDTMTSKGLLPNA----FTYNTVMTAYGNIGKVDEALALFDQMKKSGCVP 382
Query: 111 --------------------------EEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW 143
E G N +N +L + GK G +D V R+
Sbjct: 383 NVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 442
Query: 144 ELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
E K V++ + Y +I++ + +A K++ E S N L++V R
Sbjct: 443 EGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQ 502
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
G A+++V+ + KG + + +S+ L Y + I ++A++K + W
Sbjct: 503 GDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNI-AGIDAIEKEVYGGTVFPSW-- 559
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
V + FK +GG E + + +G+ P
Sbjct: 560 -VILRTLVIANFKCR-RLGGIEKAFQEVKARGYNP 592
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 150/367 (40%), Gaps = 52/367 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTY------CTR- 54
++R G+A T V YN +L +Y + G ++ ++ +L+ EM G+ D +T C R
Sbjct: 198 ELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRD 257
Query: 55 ----------------------------LSAYADASDHEGIDKILTMMEADPNVALDWVI 86
L + A ++ ++L ME D D V
Sbjct: 258 GLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQD-GCQPDAVT 316
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
Y + Y + G ++A L KG N+ YN ++T YG GK D+ L +++
Sbjct: 317 YNELAGTYARAGFYEEAAKCLDTMTS--KGLLPNAFTYNTVMTAYGNIGKVDEALALFDQ 374
Query: 146 YKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNG 203
KK+ V N N Y ++ L K ++ E S++ C R+ N ++ V + G
Sbjct: 375 MKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEM-SRSGCTPNRVTWNTMLAVCGKRG 433
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
+ + ++ K G E+ ++ L Y + A + ++ +A + P
Sbjct: 434 MEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSA-----GFAPC 488
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETL----R 319
+ + A L+ +GD A++ + + KGF P D LL N+ + +
Sbjct: 489 LTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEK 548
Query: 320 ELYGNSL 326
E+YG ++
Sbjct: 549 EVYGGTV 555
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 111/249 (44%), Gaps = 9/249 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G A YN++L + + G++ S++ +M G + +Y L YA
Sbjct: 479 EMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGG 538
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ GID I + V WVI T+ K + L ++K+ +++K N
Sbjct: 539 NIAGIDAIEKEVYGG-TVFPSWVILRTLVIANFKC----RRLGGIEKAFQEVKARGYNPD 593
Query: 122 --AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
+N +L++Y K G V I++ K++ + Y +++ K + AEKI
Sbjct: 594 LVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILN 653
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ +S + D N +I+ +C+ GL+++A+ +++ G V +++ L GY
Sbjct: 654 QLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLE 713
Query: 239 QIHKAVEAM 247
+A E +
Sbjct: 714 MFSEAREVI 722
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 25/203 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+++ G V++NSML +Y K G + K+ + ++++G++ D TY + + YA
Sbjct: 582 FQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAK 641
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKV 119
S+ +KIL +++ V D V Y TV NG+ K GL+ +A +L SE G A
Sbjct: 642 CSESWEAEKILNQLKSS-QVKPDVVSYNTVINGFCKQGLIKEAQRIL--SEMIADGMAPC 698
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLLKLD 168
Y+ TL G Y E++ +A +V+N YR V+ S K
Sbjct: 699 VVTYH---TLVGGYAS-------LEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAK 748
Query: 169 DLESAEKIFEEWESQALCYDTRI 191
E A E +D ++
Sbjct: 749 RFEEARSFLSEVSETDPNFDKKV 771
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 4/292 (1%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T + +N+++ + N E DSL+ M +G+ D TY T + A +
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEA 206
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+++L M+A A D V Y++ G K G + A +L++ + V + YN IL
Sbjct: 207 EQLLERMKAS-GCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVT-YNTIL 264
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQAL 185
K GK D L + E + N GY V+ L KL + A + E
Sbjct: 265 DGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGC 324
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D + L++ C+ G +E+A V ++G + + ++ L G ++ +A
Sbjct: 325 RPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++++ + PSV + A + G I A F + + +G P
Sbjct: 385 MVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDP 436
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 8/251 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G +V +N+++ + K G + L+ M GI + +Y L
Sbjct: 1 MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60
Query: 64 -HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
HE + + M+ D V Y+T+ +GY K G ++++ +LK E +G + ++
Sbjct: 61 WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLK--EVISRGLRPDAL 118
Query: 123 Y--NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
V+ +L + + + E+ + + +IS + +LE A+ + +
Sbjct: 119 MYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTM 178
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + D N L+D C+ G L++AE L+ K G V ++ G ++ ++
Sbjct: 179 AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKV 238
Query: 241 ---HKAVEAMK 248
H+ +E M+
Sbjct: 239 LNAHQVLEQMR 249
>gi|356534606|ref|XP_003535844.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Glycine max]
Length = 600
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 141/309 (45%), Gaps = 22/309 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL L T N +L LY K + D L+ ME+ + +TY + + ++
Sbjct: 259 KMKDLDLPLTVFACNQLLLLYKKLDKKKIADVLLL-MEKENVKPSLFTYRILIDSKGHSN 317
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D G++++ M+ +P++ L A + Y GL +KA A+LK +I+G +
Sbjct: 318 DIAGMEQVFETMKEEGFEPDIQLQ----ALLARHYTSAGLKEKAEAILK----EIEGENL 369
Query: 120 NSAYNV---ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V +L LY GK D+V RIW++ + +V + + + KL+ +E AE +
Sbjct: 370 EEKQWVCATLLRLYANLGKADEVERIWKVCESKPRV--DDCLAAVEAWGKLEKIEEAEAV 427
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E S+ +++ + L+ +Y N +L K ++L+ G I +W L Y Q
Sbjct: 428 F-EMASKKWKLNSKNYSILLKIYANNKMLAKGKDLIKRMADSGLRIGPLTWNALVKLYIQ 486
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ KA ++K + Q +P + L+ + GD+ +E + G+
Sbjct: 487 AGEVEKADSVLQKAIQQSQL----QPMFTTYLDILEQYAKRGDVHNSEKIFLKMRQAGYT 542
Query: 297 PTDLQDKLL 305
Q K+L
Sbjct: 543 SRISQFKVL 551
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHE-MEENGITYDRYTYCTRLSAYA 59
+++M D GL + +N+++KLY + G EK DS++ + ++++ + TY L YA
Sbjct: 462 IKRMADSGLRIGPLTWNALVKLYIQAGEVEKADSVLQKAIQQSQLQPMFTTYLDILEQYA 521
Query: 60 DASDHEGIDKILTMM 74
D +KI M
Sbjct: 522 KRGDVHNSEKIFLKM 536
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 125/305 (40%), Gaps = 45/305 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++ G TV YN++L+++ K G + + S++ EMEEN D TY ++AYA A
Sbjct: 313 ELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAG 372
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ ++ MM V + + Y TV + YGK G D+AL + +E G N+
Sbjct: 373 FSKEAAVVIEMM-TQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEA--GCVPNTC 429
Query: 123 -YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIFEEW 180
YN +L++ GK + ++++++ K N N I +L ++ ++F E
Sbjct: 430 TYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREM 489
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+S D N LI Y R G + V+ K+ G
Sbjct: 490 KSCGFEPDRDTFNTLISAYGRCG------SEVDASKMYGE-------------------- 523
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
T + V + A L+ +GD EN I + KGF PT+
Sbjct: 524 --------------MTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTET 569
Query: 301 QDKLL 305
L+
Sbjct: 570 SYSLM 574
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V++NSML ++ + +++ + ++ + E+G+ D TY + + Y + ++IL
Sbjct: 639 VIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKT 698
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNSAYNVILTLY-- 130
+E + D V Y TV G+ + GL+ +A+ ML + +E I+ YN ++ Y
Sbjct: 699 LEKS-QLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFT--YNTFVSGYTA 755
Query: 131 -GKYGKKDDVL 140
G YG+ +DV+
Sbjct: 756 MGMYGEIEDVI 766
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 108/253 (42%), Gaps = 10/253 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G YN++L + G++ ++++ +M+ G +Y L YA
Sbjct: 523 EMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 582
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL---DKALAMLKKSEEQIKGAKV 119
++ GI++I + + + W++ T+ K L ++A + KK +
Sbjct: 583 NYLGIERIEEGIN-EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIF 641
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
NS + I T Y + + +L+ +++ + Y +++ ++ + AE+I +
Sbjct: 642 NSMLS-IFTRNNMYDQAEGILQ--SIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKT 698
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN-- 237
E L D N +I +CR GL+++A +++ +G + ++ +GY
Sbjct: 699 LEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 758
Query: 238 -SQIHKAVEAMKK 249
+I +E M K
Sbjct: 759 YGEIEDVIECMAK 771
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 121/302 (40%), Gaps = 16/302 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + +V YN ++ Y + G ++ ++ M + G+ + TY T + AY
Sbjct: 346 LKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGK 405
Query: 61 AS-DHEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + E + +M EA PN Y V + GK ++ + ML + + G
Sbjct: 406 AGKEDEALKLFYSMKEAGCVPNTC----TYNAVLSMLGKKSRSNEMIKML--CDMKSNGC 459
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N A +N IL L G G V R++ E+ + + + +IS+ + A K
Sbjct: 460 FPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASK 519
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
++ E N L++ R G EN+++ K KG + S+ + Y
Sbjct: 520 MYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYA 579
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + +E +++ + Q W L L FK + G+E L G+
Sbjct: 580 KGGN-YLGIERIEEGINEGQIFPSWMLLRTLL---LANFKCRA-LAGSERAFTLFKKHGY 634
Query: 296 IP 297
P
Sbjct: 635 KP 636
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK-DDVL 140
LD Y T+ + Y + G +KA+ + ++ +E + + YNVIL ++GK G+ +L
Sbjct: 215 LDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVT-YNVILDVFGKMGRSWRKIL 273
Query: 141 RIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199
+ E+ K +K V+S+ + L A+ F E +S T N L+ V+
Sbjct: 274 GVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVF 333
Query: 200 CRNGLLEKA 208
+ G+ +A
Sbjct: 334 GKAGVYTEA 342
>gi|357119107|ref|XP_003561287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Brachypodium distachyon]
Length = 576
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 126/292 (43%), Gaps = 9/292 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++RDL L T N M+ LY + + D +M ME+ I +TY +
Sbjct: 232 FREIRDLSLPLTVSACNQMILLYKRVARTKVADIIML-MEKENIKPSPFTYKLIIDLKGR 290
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
++D G++ L M+A V D+V V Y GL++KA A++ + E + K
Sbjct: 291 SNDISGVEVTLNEMKA-AGVEPDFVTQTMVAKFYISGGLIEKAKAVVSEIEMEYMKDK-R 348
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
A +L LY K D+V RIW+L + + + I + KL +E AE+ FE
Sbjct: 349 HAVRSLLHLYAALSKPDEVARIWKL---CTEPKLDDFMAAIEAWGKLGCIEQAEETFEAM 405
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ N +++VY N L++K + V G +W L Y + ++
Sbjct: 406 LEATQKLSSKYYNGMLNVYAENKLMDKGKKFVERMSFDGCPNGPLTWDALVKLYVNSGEV 465
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
KA ++ A + +P+ S L + GDI AE + L +
Sbjct: 466 AKADSFLQN---ATEQNPDRRPTYGSYIYLLMAYAKMGDIYNAEKMFDRLKN 514
>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
gi|223948163|gb|ACN28165.1| unknown [Zea mays]
gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
Length = 786
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 36/295 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ ++ G A V YN++L+++ K GN+ + ++ EME+NG D TY YA
Sbjct: 268 FEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYAR 327
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAML------------- 107
A E + L M A + + Y TV YG VG +D+ALA+
Sbjct: 328 AGFFEEAARCLDTM-ASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVN 386
Query: 108 ----------KKS----------EEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWE-L 145
KKS E G N +N +L + GK G +D V R+ E +
Sbjct: 387 TYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGM 446
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
V++ + Y +I++ + +A K++ E S N L++V R G
Sbjct: 447 RSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDW 506
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260
A+++V+ + KG + + +S+ L Y + + +V + W
Sbjct: 507 STAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSW 561
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 139/342 (40%), Gaps = 48/342 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYT------YCTR- 54
++R G+A T V YN +L +Y + G ++ ++ +L+ EM G+ D +T C R
Sbjct: 199 ELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRD 258
Query: 55 ----------------------------LSAYADASDHEGIDKILTMMEADPNVALDWVI 86
L + A ++ ++L ME + D V
Sbjct: 259 GLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQN-GCQPDAVT 317
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
Y + Y + G ++A L KG N+ YN ++T YG GK D+ L +++
Sbjct: 318 YNELAGTYARAGFFEEAARCLDTMAS--KGLLPNAFTYNTVMTAYGNVGKVDEALALFDQ 375
Query: 146 YKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNG 203
KK V N N Y V+ L K ++ E S++ C R+ N ++ V + G
Sbjct: 376 MKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEM-SRSGCTPNRVTWNTMLAVCGKRG 434
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
+ + ++ + G E+ ++ L Y + A + ++ +A + P
Sbjct: 435 MEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSA-----GFTPC 489
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
+ + A L+ +GD A++ + + KGF P + LL
Sbjct: 490 ITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLL 531
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+++ G V++NSML +Y K G + K + ++ +G++ D TY + + YA
Sbjct: 584 FQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAK 643
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKV 119
S+ +KIL ++ + D V Y TV NG+ K GL+ +A +L SE G A
Sbjct: 644 CSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVL--SEMVADGMAPC 701
Query: 120 NSAYNVILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y+ ++ Y + + +V I + + +K + YR V+ S + E A
Sbjct: 702 AVTYHTLVGGYSSLEMFSEAREV--IGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGF 759
Query: 177 FEEWESQALCYDTR 190
E L +D +
Sbjct: 760 LSEVSETDLDFDKK 773
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 111/260 (42%), Gaps = 29/260 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G YN++L + + G++ S++ +M G + +Y L YA
Sbjct: 480 EMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGG 539
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ GI I + V WVI T+ K LD ++ + +++K N
Sbjct: 540 NVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLDG----METAFQEVKARGYNPD 595
Query: 122 --AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS-LLKLDDL-ESAEKIF 177
+N +L++Y K G +Y KA +V ++ R+ +S L+ + L + K
Sbjct: 596 LVIFNSMLSIYAKNG----------MYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCS 645
Query: 178 EEWESQAL-----CYDTRIP-----NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
E WE++ + C T P N +I+ +C+ GL+++A+ +++ G ++
Sbjct: 646 ESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTY 705
Query: 228 YYLATGYRQNSQIHKAVEAM 247
+ L GY +A E +
Sbjct: 706 HTLVGGYSSLEMFSEAREVI 725
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 139/354 (39%), Gaps = 44/354 (12%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G YN +L + K F + ++ EM +G T +R T+ T L+
Sbjct: 375 QMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRG 434
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK------------- 109
+ + ++L M + V L Y T+ YG+ G A M +
Sbjct: 435 MEDYVTRVLEGMRSC-GVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTY 493
Query: 110 --------------------SEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIW-ELYK 147
S+ + KG K N +Y+++L Y K G + I E+Y
Sbjct: 494 NALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYG 553
Query: 148 K-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
AV R ++ + K L+ E F+E +++ D I N ++ +Y +NG+
Sbjct: 554 SGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYS 613
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVES 266
KA + + K G + ++ L Y + S+ +A E + L QT+ KP V S
Sbjct: 614 KATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEA-EKILNQLKCSQTM---KPDVVS 669
Query: 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRE 320
++ F +G + A+ + + G P + L G S+LE E
Sbjct: 670 YNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTL---VGGYSSLEMFSE 720
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 129/308 (41%), Gaps = 49/308 (15%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
++ G A TV YN++L+++ K G + + S+M EME+N D TY ++AY A
Sbjct: 306 LKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGF 365
Query: 64 H-EGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ EG I TM E PN V Y T+ N YG+ +DKAL++ + +E V
Sbjct: 366 YEEGAALIDTMTENGIKPNA----VTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNV- 420
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIFEE 179
YN IL + GK + +++++I K N N + S+ + +++F+E
Sbjct: 421 CTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQE 480
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S D N LI R G AE + + L G+
Sbjct: 481 MKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDE--------------MLEAGF----- 521
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
PSV + A L+ GD AE+ I+ + +KGF P++
Sbjct: 522 ---------------------TPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSE 560
Query: 300 LQDKLLDN 307
L+ N
Sbjct: 561 TSYSLILN 568
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 115/264 (43%), Gaps = 10/264 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++M D V YN ++ Y + G +E+ +L+ M ENGI + TY T ++AY
Sbjct: 338 MKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGR 397
Query: 61 ASDHEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A+ +DK L++ + + A + Y + GK ++ + +L + ++ G
Sbjct: 398 AAQ---VDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKIL--CDMKVDGCA 452
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
N +N +L++ G G V R++ E+ + + + +I++ + AEKI
Sbjct: 453 PNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKI 512
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
++E N L++ R G AE+++ K KG + S+ + Y +
Sbjct: 513 YDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAK 572
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKW 260
+ K + ++K + W
Sbjct: 573 GGYV-KGINRIEKDIYDGHIFPSW 595
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q ++ G VV+NSML ++ + ++ +MH ++E G+ D TY + + YA
Sbjct: 618 FQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYAR 677
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-V 119
+ ++IL ++ + + D + Y TV G+ + GL+ +AL L SE +G +
Sbjct: 678 GGECWKAEEILRELQNSGDKS-DLISYNTVIKGFCRQGLMHEALRTL--SEMISRGIRPC 734
Query: 120 NSAYNVILTLY---GKYGKKDDVL 140
YN + Y G + + D+VL
Sbjct: 735 IVTYNTFVGGYAAKGMFAEIDEVL 758
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 39/232 (16%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y ++L Y + G +E+ ++ +M E+G++ TY L Y +KIL ++
Sbjct: 211 AYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMG--RSWNKILGLL 268
Query: 75 E--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
+ + D +TV + G+ GLLD+A + Q A YN +L ++GK
Sbjct: 269 DEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQ-GYAPGTVTYNALLQVFGK 327
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
G +Y +A+ ++ +E E D
Sbjct: 328 AG----------IYSEALSIM------------------------KEMEDNNCPPDAVTY 353
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
N L+ Y R G E+ L++ G + + ++ + Y + +Q+ KA+
Sbjct: 354 NELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKAL 405
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 124/289 (42%), Gaps = 46/289 (15%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G A + +N+ML + G + + + EM+ G DR T+ T ++A
Sbjct: 446 MKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGS 505
Query: 64 HEGIDKIL-TMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+KI M+EA P+VA Y + N + G A +++K + KG K +
Sbjct: 506 DIDAEKIYDEMLEAGFTPSVA----TYNALLNALARRGDWRTAESVIKDMKN--KGFKPS 559
Query: 121 -SAYNVILTLYGKYGKKDDVLRI------------WELYK----------------KAVK 151
++Y++IL Y K G + RI W L + +A +
Sbjct: 560 ETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQ 619
Query: 152 VLN-NGYRN---VISSLLKL----DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
L +GY+ V +S+L + + + A +I + L D N L+D+Y R G
Sbjct: 620 ALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGG 679
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
KAE ++ + G + + S+ + G+ + +H+A+ + ++++
Sbjct: 680 ECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMIS 728
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
S H K+ ++ D + +LD Y T+ + Y + G ++A+A+ +K E + +
Sbjct: 188 SQHSIASKLFDVIPLD-DYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVT 246
Query: 122 AYNVILTLYGKYGKK-DDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YNV+L +YGK G+ + +L + E+ K + VIS+ + L+ A++ F
Sbjct: 247 -YNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVG 305
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
+SQ T N L+ V+ + G+ +A +++
Sbjct: 306 LKSQGYAPGTVTYNALLQVFGKAGIYSEALSIM 338
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +++ GL V YNS++ LY + G K + ++ E++ +G D +Y T + +
Sbjct: 653 MHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCR 712
Query: 61 AS-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL---LDKALAMLKKSE 111
HE + + M+ + V Y T GY G+ +D+ L+ + K +
Sbjct: 713 QGLMHEALRTLSEMISRGIRPCI--VTYNTFVGGYAAKGMFAEIDEVLSYMTKHD 765
>gi|356498381|ref|XP_003518031.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Glycine max]
Length = 609
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 134/298 (44%), Gaps = 20/298 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL L T N +L LY K + D L+ ME+ + +TY + + ++
Sbjct: 268 KMKDLDLPLTAFACNQLLLLYKKLDKKKIADVLLL-MEKENVKPSLFTYRILIDSKGQSN 326
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKVNS 121
D G++++ M+ + D I A + Y GL +KA AMLK+ E E +K +
Sbjct: 327 DIAGMEQVFETMK-EEGFEPDIQIQALLARHYTSSGLKEKAEAMLKEMEGENLKENQWVC 385
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE--- 178
A +L LY GK D+V RIW++ + +V + + KL+ +E AE +FE
Sbjct: 386 A--TLLRLYANLGKADEVERIWKVCESKPRV--EDCLAAVEAWGKLNKIEEAEAVFEMVS 441
Query: 179 -EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+W+ + Y + L+ +Y N +L K + LV G I +W L Y Q
Sbjct: 442 KKWKLNSKNY-----SVLLKIYANNKMLTKGKELVKLMADSGVRIGPLTWDALVKLYIQA 496
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ KA + K + Q +P + A L+ + GD+ +E + G+
Sbjct: 497 GEVEKADSILHKAIQQNQL----QPMFTTYLAILEQYAKRGDVHNSEKIFLKMRQAGY 550
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 10/269 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + +NS+L + K G +E SL EM GI D +TY T L A +
Sbjct: 178 GMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMA 237
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+I++ M A N+ + V Y+T+ +GY K G LD A + +E + G ++ +YN +
Sbjct: 238 FEIMSEMPA-KNILPNVVTYSTMIDGYAKAGRLDDARNLF--NEMKFLGISLDRVSYNTL 294
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
L++Y K G+ ++ + + E+ ++ Y ++ K + K+FEE +++ +
Sbjct: 295 LSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHV 354
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ + LIDVY + GL +A ++ K G + V + L +N + AV
Sbjct: 355 SPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVS 414
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYF 274
+ ++ T +P+V + + +D F
Sbjct: 415 LLDEM-----TKEGIRPNVVTYNSIIDAF 438
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 42/248 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M + V Y++M+ Y K G + +L +EM+ GI+ DR +Y T LS YA
Sbjct: 241 MSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAK 300
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + ME + + D V Y + GYGK D +++K E++K V+
Sbjct: 301 LGRFEEAMDVCREME-NSGIRKDVVTYNALLGGYGKQYKYD----VVRKVFEEMKARHVS 355
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y+ ++ +Y K G LY++A+ V F
Sbjct: 356 PNLLTYSTLIDVYSKGG----------LYREAMDV------------------------F 381
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E++ L D + + LID C+NGL+E A +L++ +G +V ++ + + +
Sbjct: 382 REFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRP 441
Query: 238 SQIHKAVE 245
+ V+
Sbjct: 442 ATTESVVD 449
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 138/302 (45%), Gaps = 10/302 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D GL T YN +LK Y K G + + ++ EME +G++ D TY + AY++
Sbjct: 314 FEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSN 373
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L MEA+ N+ + +++ + Y G K+ +LK E + G + +
Sbjct: 374 AGRWESARIVLKEMEAN-NIMPNSYVFSRILASYRDRGEWQKSFQVLK--EMKNSGVRPD 430
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ +GK+ D + ++ + + ++ + +I K + E AE++FE
Sbjct: 431 RHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFE 490
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + N +I+ + + + L+ + + G +V ++ L Y ++
Sbjct: 491 EMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSG 550
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A+E ++ + +A KPS A ++ + +G A N L+ P+
Sbjct: 551 RFSDAIECLEDMKSA-----GLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPS 605
Query: 299 DL 300
L
Sbjct: 606 LL 607
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 122/295 (41%), Gaps = 14/295 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ T +++ +G + +++ EM++NG+ Y L Y A +
Sbjct: 286 GLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDA 345
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ I++ ME V+ D Y+ + + Y G + A +LK E + NS ++ I
Sbjct: 346 EFIVSEMERS-GVSPDECTYSLLIDAYSNAGRWESARIVLK--EMEANNIMPNSYVFSRI 402
Query: 127 LTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L Y G++ K VL+ E+ V+ + Y +I + K L+ A F++ S+
Sbjct: 403 LASYRDRGEWQKSFQVLK--EMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSE 460
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ DT N LID +C+ L E+AE L KG V ++ + + + +
Sbjct: 461 GIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDV 520
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
K L + P+V + +D + G A +E + G P+
Sbjct: 521 -----KTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPS 570
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 119/288 (41%), Gaps = 12/288 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G++ Y+ ++ Y G +E ++ EME N I + Y + L++Y D
Sbjct: 349 VSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRD 408
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKV 119
+ + ++L M+ + V D Y + + +GK LD A+ K E I+ V
Sbjct: 409 RGEWQKSFQVLKEMK-NSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTV 467
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+N ++ + K + ++ E+ +K + +I+S + + + + +
Sbjct: 468 T--WNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMG 525
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
S L + LID+Y ++G A + K G + + L Y Q
Sbjct: 526 NMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKG 585
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
+AV A + + A KPS+ +L + ++ F + D AE F
Sbjct: 586 LSEQAVNAFRLMRAD-----SLKPSLLALNSLINAFGE--DRRDAEAF 626
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M MR LGL V Y +++ +Y K+G F + +M+ G+ Y ++AYA
Sbjct: 524 MGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQ 583
Query: 61 ASDHEGIDKILTMMEAD---PN-VALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112
E +M AD P+ +AL+ +I N +G+ +A ++LK +E
Sbjct: 584 KGLSEQAVNAFRLMRADSLKPSLLALNSLI-----NAFGEDRRDAEAFSVLKYMKE 634
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 106/275 (38%), Gaps = 53/275 (19%)
Query: 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS--DHEGI 67
A + + YN+++ + + EK +L+ M ++G D Y + + ++ D +
Sbjct: 181 ALSPLTYNALINACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPIL 240
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
K+ + ++ D + LD + + G+ K G +KA+ L Q G +A
Sbjct: 241 QKLYSEIQCD-KLELDVQLSNDIIVGFAKAGDPNKAMEFLGMV--QASGLSPRTA----- 292
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
TL D RI E AE IFEE + L
Sbjct: 293 TLIAVISALGDSGRIIE----------------------------AEAIFEEMKDNGLKP 324
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ------IH 241
TR N L+ Y + G+L+ AE +V+ + G ++ L Y + +
Sbjct: 325 KTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVL 384
Query: 242 KAVEA---------MKKVLAAYQTLVKWKPSVESL 267
K +EA ++LA+Y+ +W+ S + L
Sbjct: 385 KEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVL 419
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 123/283 (43%), Gaps = 21/283 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M MR ++ V Y++M+ Y K G FE+ L H+M+E+G+ DR +Y T + YA
Sbjct: 363 MSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAK 422
Query: 61 ASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D LT + V L D V Y + + YGK G A + K + +
Sbjct: 423 LGR---FDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPN 479
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIF 177
V + Y+ ++ Y K G D I+ +K+A +K Y ++I S K +E A +
Sbjct: 480 VLT-YSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLL 538
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAE--------NLVNHEKLKGREIHVKSWYY 229
+E + + N LID Y RNG ++ E N+ N + EI K+
Sbjct: 539 QEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKT--- 595
Query: 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272
+QN+ H V A V Q KP+V + +A L+
Sbjct: 596 --LTSQQNANDHTGVLAAVSVFHEMQQF-GLKPNVVTFSAILN 635
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 146/325 (44%), Gaps = 15/325 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ G+ + +NS++ + + +E + EM+ GI D +TY T + A
Sbjct: 293 FEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCK 352
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKV 119
E I++ M N++ + V Y+T+ +GYGK+G ++A+ + +E ++ +V
Sbjct: 353 GGQMELAASIMSSMRLK-NISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRV 411
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN ++ +Y K G+ DD L ++ + +K Y +I + K + A +F+
Sbjct: 412 S--YNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFD 469
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ +++ L + + LID Y + G+ + A ++ K G + V + L +
Sbjct: 470 KMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCG 529
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF-----IELLNDK 293
+ AV VL T +P++ + + +D + G + E I + N
Sbjct: 530 LVEDAV-----VLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKV 584
Query: 294 GFIPTDLQDKLLDNVQNGKSNLETL 318
G T++ K L + QN + L
Sbjct: 585 GDRSTEIICKTLTSQQNANDHTGVL 609
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 11/200 (5%)
Query: 95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN 154
G++G ++ AL + ++++ G V AY+ +++ YG+ G+ + L++++ KKA N
Sbjct: 210 GRLGKVEIALDVFNRAQKAGFGNNVY-AYSAMVSAYGRSGRCREALKVFQAMKKAGCKPN 268
Query: 155 -NGYRNVISSLLKLD-DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
Y +I + K DL+ A IFEE + + + D N LI V R L E ++ +
Sbjct: 269 LITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVF 328
Query: 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272
+ +G E + ++ L + Q+ A M + L P+V + + +D
Sbjct: 329 AEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSM-----RLKNISPNVVTYSTMID 383
Query: 273 YFKDEGDIGGAENFIELLND 292
+ G +G E I L +D
Sbjct: 384 GY---GKLGCFEEAIGLYHD 400
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYG----KKDDVLR 141
Y+ + + YG+ G +AL + + ++ G K N YN I+ GK G K D+
Sbjct: 237 YSAMVSAYGRSGRCREALKVFQAMKK--AGCKPNLITYNTIIDACGKGGVDLKKALDIFE 294
Query: 142 IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
E+ K+ V+ + ++I+ + E ++++F E + + + D N LID C+
Sbjct: 295 --EMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCK 352
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
G +E A ++++ +LK +V ++ + GY
Sbjct: 353 GGQMELAASIMSSMRLKNISPNVVTYSTMIDGY 385
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 154/355 (43%), Gaps = 38/355 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
++M++ G + V YN ++ LY K G ++E + L EM+ GI D YTY T ++A A
Sbjct: 140 FEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACA 199
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S E ++ T M++ N D V Y + + YGK G ++A +LK+ E G
Sbjct: 200 SGSLCEEATELFTQMKSS-NCTPDRVTYNALLDVYGKAGWYNEAANVLKEMES--AGCLP 256
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N YN +L+ +G+ G + + + + K ++ Y +++S+ + +E A +I+
Sbjct: 257 NIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIY 316
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ + ++ N LI ++ +N + + + G E + +W L + +N
Sbjct: 317 NQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKN 376
Query: 238 ---SQIHKAVEAMKK-------------------------VLAAYQTLVK--WKPSVESL 267
S++ K MKK L+ Y +++ P + +
Sbjct: 377 GMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATF 436
Query: 268 AACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLDNVQNGKSNLETLREL 321
L EG AE ++ LN + P D+ +L NG LE L+E+
Sbjct: 437 NTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANG-GELEKLKEM 490
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS-DHEGIDKILT 72
+ Y SML Y G EKL ++ + + + + T + Y+ S E D L
Sbjct: 469 IAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLA 528
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKA---LAMLKKS--EEQIKGAKVNSAYNVIL 127
M D + + + YGK G++DKA A+L+ + E + YN ++
Sbjct: 529 MRHH--GYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDV------VTYNCLM 580
Query: 128 TLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
+YG+ Y K + LR + +++ Y VI S K L SA +IF E S
Sbjct: 581 GMYGREGMYRKCEATLRECMAAGQTPDLVS--YNTVIFSYSKHGQLSSATRIFHEMVSNG 638
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
+ D+ N + Y G+ +A ++V H
Sbjct: 639 IQPDSFTYNTFVGCYVNGGMFPEALSVVKH 668
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 12/200 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T +N+M+ +Y K G +K + G+ D TY + Y
Sbjct: 529 MRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGM 588
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
+ + L A D V Y TV Y K G L A + E G + +S
Sbjct: 589 YRKCEATLRECMAAGQTP-DLVSYNTVIFSYSKHGQLSSATRIFH--EMVSNGIQPDSFT 645
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN + Y G + L + + ++K K YR ++ + K+ E E+I + +
Sbjct: 646 YNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERILKFIK 705
Query: 182 SQALCYDTRIPNFLIDVYCR 201
S PNF Y R
Sbjct: 706 SSD-------PNFSKAAYRR 718
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 41/230 (17%)
Query: 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DASDHEGIDKILTMMEAD 77
ML++ + + L + E G D Y Y + +SA + + E + M EA
Sbjct: 88 MLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAG 147
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK- 136
P +L YNVI+ LYGK G+
Sbjct: 148 PQPSL--------------------------------------VTYNVIIDLYGKKGRSW 169
Query: 137 DDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195
+++L ++E K + ++ Y I++ E A ++F + +S D N L
Sbjct: 170 ENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNAL 229
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+DVY + G +A N++ + G ++ ++ L + + + + A E
Sbjct: 230 LDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAE 279
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 133/297 (44%), Gaps = 13/297 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM G+ V YNS++ K G + + M + G+ + TY T L YA
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K G +D+A+ + K +Q G +
Sbjct: 352 KGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ--GLNPD 408
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D +R +E + + + N Y ++I SL D + A+++
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C DT N +ID +C+ G + ++E L + G + ++ ++ L GY
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAG 528
Query: 239 QIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ +A + MK Y TL+ + + L F++ G + + I
Sbjct: 529 KMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 5/208 (2%)
Query: 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIYA 88
+ +D ++ M + G + ++Y L D + + ++L MM D + D V Y
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIW-ELY 146
TV NG+ K G LDKA + + +G N YN I+ K D + + +
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLD--RGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMV 261
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
K V Y +++ + A ++ S + D N L+D C+NG
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGY 234
+A + + +G + + ++ L GY
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGY 349
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 40/246 (16%)
Query: 1 MQKMRDLG--LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
+Q M D G V Y +++ ++K G+ +K HEM + GI + TY + ++A
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAAL 244
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + ++LT M + V + Y ++ +GY G +A+ LKK
Sbjct: 245 CKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK-------VLNNGY------------- 157
V + YN ++ K G+ + ++++ + K+ +K L GY
Sbjct: 304 VVT-YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 362
Query: 158 ----RN-----------VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
RN +I + K ++ A +F + Q L DT +I + C++
Sbjct: 363 DLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422
Query: 203 GLLEKA 208
G +E A
Sbjct: 423 GRVEDA 428
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 5/189 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +G+ + Y++++ Y G ++ L+ M G+ D TY T ++ Y S
Sbjct: 505 MVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E + ME+ V+ D + Y + G + A + E G ++ S
Sbjct: 565 MEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAAKELYVGITES--GTQLELST 621
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+IL K D+ LR+++ L +++ + +I +LLK+ + A+ +F
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 182 SQALCYDTR 190
+ L D R
Sbjct: 682 ANGLVPDVR 690
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 129/302 (42%), Gaps = 23/302 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V YNS++ K G + + M + G+ D TYCT L YA
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + D ++ + Y K +D+A+ + K + V
Sbjct: 349 KGALVEMHALLDLMVRN-GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVV 407
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
+ Y ++ + K G DD + +E ++++ G Y ++I SL D + A
Sbjct: 408 T-YGAVIGILCKSGSVDDAMLYFE------QMIDEGLTPNIIVYTSLIHSLCIFDKWDKA 460
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E++ E + +C +T N +I +C+ G + ++E L + G + +V ++ L G
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDG 520
Query: 234 YRQNSQIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN 285
Y ++ +A + MK Y TL+ V + L FK+ G + N
Sbjct: 521 YCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580
Query: 286 FI 287
I
Sbjct: 581 II 582
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 114/301 (37%), Gaps = 34/301 (11%)
Query: 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPN--VALDWVIY 87
+ +D ++ M E D ++ L D + + ++L MM D A D V Y
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSY 199
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LY 146
TV NG+ K G DKA + + ++ V + Y+ I+ K D + + +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVT-YSSIIAALCKGQAMDKAMEVLTTMV 258
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
K V Y +++ + + A ++ S + D N L+D C+NG
Sbjct: 259 KNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRST 318
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNS---QIHKAVEAMKK------------VL 251
+A + + +G E + ++ L GY ++H ++ M + ++
Sbjct: 319 EARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILI 378
Query: 252 AAY--------QTLVKWK-------PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
AY LV K P+V + A + G + A + E + D+G
Sbjct: 379 CAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLT 438
Query: 297 P 297
P
Sbjct: 439 P 439
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G A V Y +++ ++K G+ +K S HEM + I+ D TY + ++A
Sbjct: 188 RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAM 247
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ ++LT M + V + + Y ++ +GY +A+ LKK V + YN
Sbjct: 248 DKAMEVLTTMVKN-GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVT-YN 305
Query: 125 VILTLYGKYGKKDDVLRIWELYKK 148
++ K G+ + +I++ K
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTK 329
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 94/220 (42%), Gaps = 25/220 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY--------C 52
+ M +G+ V YN+++ Y + + +L EM +G++ + TY
Sbjct: 534 LSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 593
Query: 53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--- 109
TR +A A + GI K T +E Y + +G K L D+AL M +
Sbjct: 594 TRRTAAAKEL-YVGITKSGTQLELST--------YNIILHGLCKNNLTDEALRMFQNLCL 644
Query: 110 SEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLD 168
++ Q++ +N+++ K G+ D+ ++ + V N YR + +++
Sbjct: 645 TDLQLE----TRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQG 700
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
LE +++F E D+ + NF++ + G + +A
Sbjct: 701 LLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740
>gi|297849054|ref|XP_002892408.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338250|gb|EFH68667.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 138/290 (47%), Gaps = 4/290 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+LG + +VYN ++ G + + + M+ + T TY + A+
Sbjct: 191 MKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEAN 250
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +G+ K M+ V + V Y + + L A A ++ E+ + G
Sbjct: 251 EHNIDGVLKAFDGMK-KAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSVTGNNW- 308
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S ++++ LYG+ GK+ +++R W + + V + Y + ++ +L+ AE+++ E
Sbjct: 309 STLDILMILYGRLGKEKELVRTWNVIRGFHHVRSKSYLLATEAFAQVGNLDRAEELWLEM 368
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ +T N L+ VYC++GL+EKA + G + + ++ +LA G + +
Sbjct: 369 KNVRGLKETEQFNSLLSVYCKDGLIEKAIGVFREMMGDGFKPNSITYRHLALGCAKAKLM 428
Query: 241 HKAVE--AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
+A++ M L ++ P +E+ + ++ F ++GD+ +E E
Sbjct: 429 KEALKNIEMGSNLKTSNSIRSSTPWLETTLSIIECFAEKGDVENSEKLFE 478
>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 540
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 5/249 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+++GL + Y S+L + + L EM+E+ + TY T L+ Y+ A
Sbjct: 260 MKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGF 319
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
H +++L M + V Y+T+ + YGKVG L +A + ++Q G K N
Sbjct: 320 HSAAEELLAKMR-QLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQ--GCKGNLIV 376
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWE 181
YN +L +YGK G+ +D R+ K + V + Y +I++ +L E ++FE+
Sbjct: 377 YNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHR 436
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ L D + +I+VY + K L+ G + + + Y
Sbjct: 437 ADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGMCE 496
Query: 242 KAVEAMKKV 250
A E ++K+
Sbjct: 497 NAAELLRKI 505
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 138/359 (38%), Gaps = 61/359 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA----- 57
KM+ LG V+YN ++ Y K GNF + ++++ G+ D TYC LSA
Sbjct: 84 KMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVG 143
Query: 58 ------------------------------YADASDHEGIDKILTMMEADPNVAL-DWVI 86
+ A HE D T E + L D V
Sbjct: 144 NIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHE--DAAATFRELQMSGYLPDSVA 201
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY 146
Y T+ + + KVG++D+A + K+++ Y +I +Y K D L + +L
Sbjct: 202 YNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMI-QVYAKARMADQALHVLKLM 260
Query: 147 KKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
K+ N GY +V+++ ++ + A K+FEE + + +++VY + G
Sbjct: 261 KEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFH 320
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV--------EAMKKVLAAYQTL 257
AE L+ + G +V ++ L Y + ++ +A + K L Y T+
Sbjct: 321 SAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTM 380
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLE 316
LD + G I AE + L D +P + L N N E
Sbjct: 381 -------------LDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFE 426
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KMR LG R V Y++++ +Y K G ++ L M++ G + Y T L Y
Sbjct: 327 LAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGK 386
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A ++++ ++ D + D V Y T+ N Y ++G ++ + + + + + G K++
Sbjct: 387 AGRINDAERLMAELK-DSKLVPDTVTYTTLINAYNRLGRFEECIRVFE--QHRADGLKLD 443
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKKA 149
+++ +YGK + + + E+ K+
Sbjct: 444 RILVAIMINVYGKARQYSKLAELLEVMPKS 473
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 132/320 (41%), Gaps = 49/320 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++R+ GL T YN++LK Y +TG+ + + ++ EME+ G+ D TY + YA
Sbjct: 299 FEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAH 358
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L MEA NV + +++ + Y G K+ +LK +K + V
Sbjct: 359 AGRWESARIVLKEMEAS-NVQPNSYVFSRILANYRDKGEWQKSFQVLK----DMKSSGVQ 413
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YNV++ +GKY + L+ A F
Sbjct: 414 PDRHFYNVMIDTFGKY----------------------------------NCLDHAMATF 439
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E S+ + D N LID +C++G + AE L + + +G + ++ + +
Sbjct: 440 ERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQ 499
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + + K+ + Q L +P+ + +D + G A +E+L GF P
Sbjct: 500 QRWEQVTAFLSKMQS--QGL---QPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKP 554
Query: 298 TDLQDKLLDN--VQNGKSNL 315
T L N Q G S L
Sbjct: 555 TSTMYNALINAYAQRGLSEL 574
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 122/291 (41%), Gaps = 12/291 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ Y+ ++ +Y G +E ++ EME + + + Y + L+ Y D
Sbjct: 334 VSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRD 393
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKV 119
+ + ++L M++ V D Y + + +GK LD A+A ++ E I V
Sbjct: 394 KGEWQKSFQVLKDMKSS-GVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIV 452
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+N ++ + K G+ D ++ E+ ++ Y +I+S+ + E
Sbjct: 453 T--WNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLS 510
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ +SQ L ++ L+DVY ++G A + K G + + L Y Q
Sbjct: 511 KMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRG 570
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289
AV A + + T PS+ +L + ++ F + D AE F L
Sbjct: 571 LSELAVNAFRLM-----TTEGLTPSLLALNSLINAFGE--DRRDAEAFAVL 614
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 11/247 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M D G+ + YN++L K G + +M EM I + TY T + YA
Sbjct: 322 MVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGR 381
Query: 64 HEGIDKILTMMEADP--NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVN 120
+D L M V LD V Y T+ + Y K+G ++AL + K+ E I+ V
Sbjct: 382 ---LDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVT 438
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFE 178
YN +L YGK + D+V R++E K+ +V N Y +I K + A ++F
Sbjct: 439 --YNALLAGYGKQYRYDEVRRVFEEMKRG-RVSPNLLTYSTLIDVYSKGGLYKEAMEVFR 495
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E++ L D + + LID C+NGL+E + L++ +G +V ++ + + +++
Sbjct: 496 EFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSA 555
Query: 239 QIHKAVE 245
V+
Sbjct: 556 SAQCVVD 562
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ LG+ V YN++L +Y K G FE+ + EME GI D TY L+ Y
Sbjct: 391 EMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQY 450
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112
++ + ++ M+ V+ + + Y+T+ + Y K GL +A+ + ++ ++
Sbjct: 451 RYDEVRRVFEEMKRG-RVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQ 499
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 111/268 (41%), Gaps = 26/268 (9%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G +T +++++ Y ++G + + M+ NG+ + TY +A DA G+
Sbjct: 220 GYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTY----NAVIDACGKGGV 275
Query: 68 D--KILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKAL----AMLKKSEEQIKGAKV 119
+ K++ + + V D + + ++ + GL + A AM+ K +Q
Sbjct: 276 EFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDI---- 331
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN +L K G+ D I E+ K + Y +I K+ L+ A +F
Sbjct: 332 -FTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFN 390
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN- 237
E + + D N L+ VY + G E+A ++ + G V ++ L GY +
Sbjct: 391 EMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQY 450
Query: 238 --SQIHKAVEAMKKV-----LAAYQTLV 258
++ + E MK+ L Y TL+
Sbjct: 451 RYDEVRRVFEEMKRGRVSPNLLTYSTLI 478
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 7/267 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G V YN ++ Y + + + L + M+ G DR TYCT + A A H+
Sbjct: 97 GCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAA 156
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
++ M+ D Y+ + + GK G L+ A + + ++ + + YN+I+
Sbjct: 157 MELYRQMQ-HAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVT-YNIII 214
Query: 128 TLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
L+ K GK D L+++ +L + Y ++ L +E AE++FEE E
Sbjct: 215 DLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWV 274
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA--- 243
D I ++D++ + G EKA N G + +V + L + Y ++S A
Sbjct: 275 ADNPIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGV 334
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAAC 270
+ M K Y TL + + S AAC
Sbjct: 335 LGGMAK-WGLYPTLQTYTSLLSSCAAC 360
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G A + V YN ++ L+ K G F+ L +++E G DR TY + +
Sbjct: 197 EMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCG 256
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103
E +++ ME VA D I+ + + +GK G +KA
Sbjct: 257 HIEDAEQVFEEMERAGWVA-DNPIFGLMVDMWGKTGNAEKA 296
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 129/302 (42%), Gaps = 23/302 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V YNS++ K G + + M + G+ D TYCT L YA
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + D ++ + Y K +D+A+ + K + V
Sbjct: 349 KGALVEMHALLDLMVRN-GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVV 407
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
+ Y ++ + K G DD + +E ++++ G Y ++I SL D + A
Sbjct: 408 T-YGAVIGILCKSGSVDDAMLYFE------QMIDEGLTPNIIVYTSLIHSLCIFDKWDKA 460
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E++ E + +C +T N +I +C+ G + ++E L + G + +V ++ L G
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDG 520
Query: 234 YRQNSQIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN 285
Y ++ +A + MK Y TL+ V + L FK+ G + N
Sbjct: 521 YCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580
Query: 286 FI 287
I
Sbjct: 581 II 582
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 114/301 (37%), Gaps = 34/301 (11%)
Query: 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPN--VALDWVIY 87
+ +D ++ M E D ++ L D + + ++L MM D A D V Y
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSY 199
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LY 146
TV NG+ K G DKA + + ++ V + Y+ I+ K D + + +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVT-YSSIIAALCKGQAMDKAMEVLTTMV 258
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
K V Y +++ + + A ++ S + D N L+D C+NG
Sbjct: 259 KNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRST 318
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNS---QIHKAVEAMKK------------VL 251
+A + + +G E + ++ L GY ++H ++ M + ++
Sbjct: 319 EARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILI 378
Query: 252 AAY--------QTLVKWK-------PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
AY LV K P+V + A + G + A + E + D+G
Sbjct: 379 CAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLT 438
Query: 297 P 297
P
Sbjct: 439 P 439
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G A V Y +++ ++K G+ +K S HEM + I+ D TY + ++A
Sbjct: 188 RGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAM 247
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ ++LT M + V + + Y ++ +GY +A+ LKK V + YN
Sbjct: 248 DKAMEVLTTMVKN-GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVT-YN 305
Query: 125 VILTLYGKYGKKDDVLRIWELYKK 148
++ K G+ + +I++ K
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTK 329
>gi|15222438|ref|NP_172238.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75163930|sp|Q940Q2.1|PPR19_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g07590, mitochondrial; Flags: Precursor
gi|15809864|gb|AAL06860.1| At1g07590/F22G5_2 [Arabidopsis thaliana]
gi|332190025|gb|AEE28146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 534
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 138/290 (47%), Gaps = 4/290 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+LG + +VYN ++ G + + + M+ + T TY + A+
Sbjct: 189 MKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEAN 248
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +G+ K M+ V + V Y + + L A A ++ E+ I G
Sbjct: 249 EHNIDGVLKAFDGMK-KAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNW- 306
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S ++++ LYG+ GK+ ++ R W + + V + Y + ++ +L+ AE+++ E
Sbjct: 307 STLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEM 366
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ +T N L+ VYC++GL+EKA + G + + ++ +LA G + +
Sbjct: 367 KNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLM 426
Query: 241 HKAVE--AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
+A++ M L +++ P +E+ + ++ F ++GD+ +E E
Sbjct: 427 KEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFE 476
>gi|8778536|gb|AAF79544.1|AC022464_2 F22G5.3 [Arabidopsis thaliana]
Length = 555
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 138/290 (47%), Gaps = 4/290 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+LG + +VYN ++ G + + + M+ + T TY + A+
Sbjct: 210 MKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEAN 269
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +G+ K M+ V + V Y + + L A A ++ E+ I G
Sbjct: 270 EHNIDGVLKAFDGMK-KAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNW- 327
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S ++++ LYG+ GK+ ++ R W + + V + Y + ++ +L+ AE+++ E
Sbjct: 328 STLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEM 387
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ +T N L+ VYC++GL+EKA + G + + ++ +LA G + +
Sbjct: 388 KNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLM 447
Query: 241 HKAVE--AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
+A++ M L +++ P +E+ + ++ F ++GD+ +E E
Sbjct: 448 KEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFE 497
>gi|449437712|ref|XP_004136635.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 144/323 (44%), Gaps = 17/323 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM++L T N +L LY +T + D L+ +EN + Y TY + ++
Sbjct: 262 KMKNLEFPITAFACNQLLLLYKRTDKRKIADVLLLMKKEN-VKYSTSTYRILIDVNGLSN 320
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++++ M+A+ + LD + + Y GL DKA A+LK+ EE I
Sbjct: 321 DITGMEEVVDSMKAE-GIKLDVETLSRLVKHYVSGGLKDKAKAILKEMEE-INSEGSRWP 378
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKIFEE 179
++L LYG+ +D+V R+WE+ N +++++ KL +++ AEKIF+
Sbjct: 379 CRILLPLYGELQMEDEVRRLWEICGS-----NPHIEECMAAIVAWGKLKNIQEAEKIFDR 433
Query: 180 WESQALCYDTRIPNFLIDVYCRNG-LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
R + +++VY + +L K + +V G + + + Y +
Sbjct: 434 VVKTGEKLSARHYSTMLNVYREDSKMLTKGKEVVKQMAESGSRMDPVTLDAVVKLYVEAG 493
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++ KA + K + Y K KP + +D + GD+ AE ++ G++
Sbjct: 494 EVEKADSFLVKTVLQY----KKKPMFTTYITLMDRYASRGDVPNAEKIFGMMRKYGYVGR 549
Query: 299 DLQ-DKLLDNVQNGKSNLETLRE 320
Q L+ N K+ +RE
Sbjct: 550 LSQFQTLIQAYVNAKAPAYGMRE 572
>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
Length = 564
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 7/267 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G V YN ++ Y + + + L + M+ G DR TYCT + A A H+
Sbjct: 97 GCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAA 156
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ M+ D Y+ + + GK G L+ A + + ++ + + YN+I+
Sbjct: 157 MDLYRQMQ-HAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVT-YNIII 214
Query: 128 TLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
L+ K GK D L+++ +L + Y ++ L +E AE++FEE E
Sbjct: 215 DLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWV 274
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA--- 243
D I ++D++ + G EKA N G + +V + L + Y ++S A
Sbjct: 275 ADNPIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGV 334
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAAC 270
+ M K Y TL + + S AAC
Sbjct: 335 LGGMAK-WGLYPTLQTYTSLLSSCAAC 360
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G A + V YN ++ L+ K G F+ L +++E G DR TY + +
Sbjct: 197 EMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCG 256
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103
E +++ ME VA D I+ + + +GK G +KA
Sbjct: 257 HIEDAEQVFEEMERAGWVA-DNPIFGLMVDMWGKTGNAEKA 296
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 132/297 (44%), Gaps = 13/297 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM G+ V YNS++ K G + + M + G+ + TY T L YA
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K G +D+A+ + K +Q G +
Sbjct: 352 KGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ--GLNPD 408
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D +R +E + + + N Y ++I SL D + A+++
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C DT N +ID +C+ G + ++E L + G + + ++ L GY
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 528
Query: 239 QIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ +A + MK Y TL+ + + L F++ G + + I
Sbjct: 529 KMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 5/208 (2%)
Query: 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIYA 88
+ +D ++ M + G + ++Y L D + + ++L MM D + D V Y
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIW-ELY 146
TV NG+ K G LDKA + + +G N Y+ I+ K D + + +
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLD--RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMV 261
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
K V Y +++ + A ++ S + D N L+D C+NG
Sbjct: 262 KNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT 321
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGY 234
+A + + +G + + ++ L GY
Sbjct: 322 EARKMFDSMTKRGLKPEITTYGTLLQGY 349
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 40/246 (16%)
Query: 1 MQKMRDLG--LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
+Q M D G V Y +++ ++K G+ +K HEM + GI + TY + ++A
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + ++LT M + V + Y ++ +GY G +A+ LKK
Sbjct: 245 CKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK-------VLNNGY------------- 157
V + YN ++ K G+ + ++++ + K+ +K L GY
Sbjct: 304 VVT-YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 362
Query: 158 ----RN-----------VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
RN +I + K ++ A +F + Q L DT +I + C++
Sbjct: 363 DLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422
Query: 203 GLLEKA 208
G +E A
Sbjct: 423 GRVEDA 428
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 5/189 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +G+ + Y++++ Y G ++ L+ M G+ D TY T ++ Y S
Sbjct: 505 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E + ME+ V+ D + Y + G + A + E G ++ S
Sbjct: 565 MEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAAKELYVGITES--GTQLELST 621
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+IL K D+ LR+++ L +++ + +I +LLK+ + A+ +F
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 182 SQALCYDTR 190
+ L D R
Sbjct: 682 ANGLVPDVR 690
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 27/260 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE-----NGITYDR--YTYCT 53
++KM++ G+ + V Y+ ++ + KTGN E D E +E N I Y Y YC
Sbjct: 369 VRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQ 428
Query: 54 RLS-----AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK 108
R + A + EGID + IY T+ +GY VG DK L + +
Sbjct: 429 RCNMDKAEALVREMEEEGIDAPID-------------IYHTMMDGYTMVGDEDKCLLVFE 475
Query: 109 KSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKL 167
+ +E V + Y ++ LY K GK L + E+ +K Y +I+ LKL
Sbjct: 476 RFKECGLNPSVIT-YGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKL 534
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
D +A IFE+ + D + N +I +C G +++A V + + + +++
Sbjct: 535 KDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTF 594
Query: 228 YYLATGYRQNSQIHKAVEAM 247
+ G+ + ++ KA++
Sbjct: 595 MPIIHGFARKGEMKKALDVF 614
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/335 (18%), Positives = 139/335 (41%), Gaps = 47/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ ++ GL + + Y ++ LY K G K + EME GI ++ TY ++ +
Sbjct: 474 FERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLK 533
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D I + D + D V+Y + + +G +D+A+ +K+ ++Q +
Sbjct: 534 LKDWANAFAIFEDLIKD-GIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQ-RHKPTT 591
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
+ I+ + + G+ L ++++ + + + + Y +I L++ +E AE+I +E
Sbjct: 592 RTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDE 651
Query: 180 W------------------------ESQALCYDTRIPN--FLIDVY---------CRNGL 204
+A Y T++ + +DVY C++G
Sbjct: 652 MTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGR 711
Query: 205 LEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
++ A L +++ + I ++ Y L G+ + I +A + M+++ +P
Sbjct: 712 MQSA--LAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKRE-----GVQP 764
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + + ++ GD+ A IE + G P
Sbjct: 765 DIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKP 799
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 10/131 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R T +YN ++ + + G+ + LM +M+ G+ D +TY + ++A + A
Sbjct: 720 KEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKA 779
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + K + M++ PNV Y T+ NG+ + L +KAL+ + E ++ G K
Sbjct: 780 GDMQRATKTIEEMKSVGVKPNVK----TYTTLINGWARASLPEKALSCFE--EMKLSGLK 833
Query: 119 VNSA-YNVILT 128
+ A Y+ ++T
Sbjct: 834 PDRAVYHCLMT 844
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 132/297 (44%), Gaps = 13/297 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM G+ V YNS++ K G + + M + G+ + TY T L YA
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K G +D+A+ + K +Q G +
Sbjct: 352 KGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ--GLNPD 408
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D +R +E + + + N Y ++I SL D + A+++
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C DT N +ID +C+ G + ++E L + G + + ++ L GY
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 528
Query: 239 QIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ +A + MK Y TL+ + + L F++ G + + I
Sbjct: 529 KMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 6/231 (2%)
Query: 8 GLARTTVVYNSMLK-LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G + + +LK L + +D ++ M + G + ++Y L D + +
Sbjct: 121 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE 180
Query: 67 IDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYN 124
++L MM D + D V Y TV NG+ K G LDKA + + +G N Y+
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD--RGILPNVVTYS 238
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
I+ K D + + + K V Y +++ + A ++ S
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ D N L+D C+NG +A + + +G + + ++ L GY
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 40/246 (16%)
Query: 1 MQKMRDLG--LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
+Q M D G V Y +++ ++K G+ +K HEM + GI + TY + ++A
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + ++LT M + V + Y ++ +GY G +A+ LKK
Sbjct: 245 CKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK-------VLNNGY------------- 157
V + YN ++ K G+ + ++++ + K+ +K L GY
Sbjct: 304 VVT-YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 362
Query: 158 ----RN-----------VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
RN +I + K ++ A +F + Q L DT +I + C++
Sbjct: 363 DLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422
Query: 203 GLLEKA 208
G +E A
Sbjct: 423 GRVEDA 428
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 5/189 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +G+ + Y++++ Y G ++ L+ M G+ D TY T ++ Y S
Sbjct: 505 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E + ME+ V+ D + Y + G + A + E G ++ S
Sbjct: 565 MEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAAKELYVGITES--GTQLELST 621
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+IL K D+ LR+++ L +++ + +I +LLK+ + A+ +F
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 182 SQALCYDTR 190
+ L D R
Sbjct: 682 ANGLVPDVR 690
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 6/251 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ GL V Y ++++ + N EK L EM E G + D Y T +S + A
Sbjct: 476 EMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAG 535
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVNS 121
+ +L+ M+ + + D V + + NG+ + LD+A MLK+ E IK V
Sbjct: 536 KLDRASFVLSKMK-EAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGV-- 592
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN +++ + K G R+ ++ K+ + Y +I + +L+ A KIF +
Sbjct: 593 TYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDM 652
Query: 181 ESQA-LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S + + +T I N LI+ CR ++ A +L++ K+KG + + ++ + G ++ +
Sbjct: 653 SSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNW 712
Query: 240 IHKAVEAMKKV 250
+ KA E M ++
Sbjct: 713 LSKAFELMDRM 723
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 5/208 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ V N+++ K G +EM+ G+ + TY + A+ + +
Sbjct: 441 QMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVN 500
Query: 63 DHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E ++ M+EA + D ++Y T+ +G + G LD+A +L K +E + S
Sbjct: 501 NIEKAMELFDEMLEA--GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVS 558
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+NV++ + + K D+ + E+ +K Y +IS K D +A ++ ++
Sbjct: 559 -FNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKM 617
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ L LI YC NG L++A
Sbjct: 618 VKEGLVPTVVTYGALIHAYCLNGNLDEA 645
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 117/274 (42%), Gaps = 15/274 (5%)
Query: 29 FEKLDSLMHEMEENG--ITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVI 86
FEK M+ E NG + D TY T + E ++ M + P + V
Sbjct: 363 FEK----MNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVT 418
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIW-E 144
Y + +GY K +++ A + + + G N N ++ K+G+ + + + E
Sbjct: 419 YNCLIDGYCKASMIEAARELFDQMNKD--GVPPNVVTLNTLVDGMCKHGRINGAVEFFNE 476
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ K +K Y +I + ++++E A ++F+E D + LI + G
Sbjct: 477 MQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGK 536
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
L++A +++ K G + S+ L G+ + +++ +A E +K++ A KP
Sbjct: 537 LDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENA-----GIKPDG 591
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ + +F GD A ++ + +G +PT
Sbjct: 592 VTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPT 625
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ V YN+++ + KTG+F LM +M + G+ TY + AY
Sbjct: 579 LKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCL 638
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + KI M + V + VIY + N + +D AL+++ + ++KG K N
Sbjct: 639 NGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLM--DDMKVKGVKPN 696
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK 148
+ N ++ +K+ + + +EL +
Sbjct: 697 T--NTFNAMFKGLQEKNWLSKAFELMDR 722
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 107/242 (44%), Gaps = 21/242 (8%)
Query: 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM---EADPNVA 81
++G ++ ++H + + G + + L+A A + + ++ +L M + PNV
Sbjct: 282 RSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNV- 340
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--------AYNVILTLYGKY 133
V + + N K +D+AL + E++ G + N YN ++ K
Sbjct: 341 ---VTFGILINHLCKFRRVDEALEVF----EKMNGGESNGFLVEPDVITYNTLIDGLCKV 393
Query: 134 GKKDDVLRIWELYKKAVKVLNNG--YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
G++++ L + E + + + N Y +I K +E+A ++F++ + +
Sbjct: 394 GRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVT 453
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
N L+D C++G + A N + KG + + ++ L + + I KA+E ++L
Sbjct: 454 LNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEML 513
Query: 252 AA 253
A
Sbjct: 514 EA 515
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM++ G + V +N ++ + + ++ ++ EME GI D TY T +S ++
Sbjct: 544 LSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSK 603
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
D +++ M + P V V Y + + Y G LD+A+ + + K
Sbjct: 604 TGDFSTAHRLMKKMVKEGLVPTV----VTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVP 659
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN+++ + + D L + + K K VK N + + L + + L A ++
Sbjct: 660 PNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFEL 719
Query: 177 FEEWESQALCYD 188
+ A D
Sbjct: 720 MDRMTEHACNPD 731
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 132/297 (44%), Gaps = 13/297 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM G+ V YNS++ K G + + M + G+ + TY T L YA
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K G +D+A+ + K +Q G +
Sbjct: 352 KGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ--GLNPD 408
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D +R +E + + + N Y ++I SL D + A+++
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C DT N +ID +C+ G + ++E L + G + + ++ L GY
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 528
Query: 239 QIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ +A + MK Y TL+ + + L F++ G + + I
Sbjct: 529 KMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 6/231 (2%)
Query: 8 GLARTTVVYNSMLK-LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G + + MLK L + +D ++ M + G + ++Y L D + +
Sbjct: 121 GFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQE 180
Query: 67 IDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YN 124
++L MM D + D V Y TV NG+ K G LDKA + + +G N Y+
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD--RGILPNVVTYS 238
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
I+ K D + + + K V Y +++ + A ++ S
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ D N L+D C+NG +A + + +G + + ++ L GY
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 40/246 (16%)
Query: 1 MQKMRDLG--LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
+Q M D G V Y +++ ++K G+ +K HEM + GI + TY + ++A
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + ++LT M + V + Y ++ +GY G +A+ LKK
Sbjct: 245 CKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK-------VLNNGY------------- 157
V + YN ++ K G+ + ++++ + K+ +K L GY
Sbjct: 304 VVT-YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 362
Query: 158 ----RN-----------VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
RN +I + K ++ A +F + Q L DT +I + C++
Sbjct: 363 DLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422
Query: 203 GLLEKA 208
G +E A
Sbjct: 423 GRVEDA 428
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 5/189 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +G+ + Y++++ Y G ++ L+ M G+ D TY T ++ Y S
Sbjct: 505 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E + ME+ V+ D + Y + G + A + E G ++ S
Sbjct: 565 MEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAAKELYVGITES--GTQLELST 621
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+IL K D+ LR+++ L +++ + +I +LLK+ + A+ +F
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 182 SQALCYDTR 190
+ L D R
Sbjct: 682 ANGLVPDVR 690
>gi|302805546|ref|XP_002984524.1| hypothetical protein SELMODRAFT_423640 [Selaginella moellendorffii]
gi|300147912|gb|EFJ14574.1| hypothetical protein SELMODRAFT_423640 [Selaginella moellendorffii]
Length = 547
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 7/238 (2%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
R+ N ML LY K F K+ L+ + EE G + + ++ L A ++ +
Sbjct: 192 RSISPINMMLTLYQKHQVFWKVAELIRDAEEAGQSLNMCSFNILLPMTFRAGGVAEMESL 251
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS---AYNVIL 127
+ MME+ LD Y + + YG+ G++DKA ML E+ ++ K N YNVI+
Sbjct: 252 VEMMESKN--FLDEHTYCMLASSYGRAGMVDKAKEMLMVVEDGMETGKFNRLRRTYNVII 309
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+YG G + V RIW++ + + Y +I S K+ E AE F +Q +
Sbjct: 310 VIYGFIGDVEGVKRIWDITSRMDPTAED-YICMIRSSAKVGLFEQAESGFLALAAQRKMH 368
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
T + N ++ V + +AE+L+ G + ++++L + +N I +A++
Sbjct: 369 IT-VCNVMLQVCQAGNFVLRAESLLRKIHQMGFKPDPATYHHLIAIHLKNDNIQRALD 425
>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 867
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 120/252 (47%), Gaps = 2/252 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + G+ V YN+M+ + + N + S+ EM E G+ + +TY + +
Sbjct: 472 LRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFK 531
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + +++ M A N + VIY T+ NG KVG KA ML+ ++ + +
Sbjct: 532 NQDEQNAWEVINQMIAS-NFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGC 590
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
++YN I+ + K G D + + E+ + + + ++I+ K + ++ A ++ E
Sbjct: 591 TSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHE 650
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S+ L D LID +C+ ++ A L + G +V + L +G+R +
Sbjct: 651 MKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGK 710
Query: 240 IHKAVEAMKKVL 251
+ A++ KK++
Sbjct: 711 MDAAIDLYKKMV 722
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 29/261 (11%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY-CTRLSAYADASDHEG-----I 67
V+YN+++ K G K EM +N I RY+ CT ++ D EG +
Sbjct: 555 VIYNTIINGLCKVGQTSK----AKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAV 610
Query: 68 DKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYN 124
+ M E PNV V + ++ NG+ K +D AL M+ E + K K++ AY
Sbjct: 611 EAYREMSENGISPNV----VTFTSLINGFCKSNRMDLALEMIH--EMKSKDLKLDVPAYG 664
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKV--LNNG--YRNVISSLLKLDDLESAEKIFEEW 180
L + KK+D+ + L+ + +++ + N Y N+IS L +++A ++++
Sbjct: 665 ---ALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKM 721
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + D +ID ++G L A +L + G + L G + Q
Sbjct: 722 VNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQF 781
Query: 241 HKA---VEAMKKVLAAYQTLV 258
+A +E MKK A L+
Sbjct: 782 VRASKMLEEMKKKDATPNVLI 802
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 132/297 (44%), Gaps = 13/297 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM G+ V YNS++ K G + + M + G+ + TY T L YA
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K G +D+A+ + K +Q G +
Sbjct: 352 KGALVEMHGLLDLMVRN-GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ--GLNPD 408
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D +R +E + + + N Y ++I SL D + A+++
Sbjct: 409 TVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELIL 468
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C DT N +ID +C+ G + ++E L + G + + ++ L GY
Sbjct: 469 EMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 528
Query: 239 QIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ +A + MK Y TL+ + + L F++ G + + I
Sbjct: 529 KMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 6/231 (2%)
Query: 8 GLARTTVVYNSMLK-LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G + + +LK L + +D ++ M + G + ++Y L D + +
Sbjct: 121 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE 180
Query: 67 IDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YN 124
++L MM D + D V Y TV NG+ K G LDKA + + +G N Y+
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD--RGILPNVVTYS 238
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
I+ K D + + + K V Y +++ + A ++ S
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ D N L+D C+NG +A + + +G + + ++ L GY
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 40/246 (16%)
Query: 1 MQKMRDLG--LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
+Q M D G V Y +++ ++K G+ +K HEM + GI + TY + ++A
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + ++LT M + V + Y ++ +GY G +A+ LKK
Sbjct: 245 CKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK-------VLNNGY------------- 157
V + YN ++ K G+ + ++++ + K+ +K L GY
Sbjct: 304 VVT-YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 362
Query: 158 ----RN-----------VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
RN +I + K ++ A +F + Q L DT +I + C++
Sbjct: 363 DLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422
Query: 203 GLLEKA 208
G +E A
Sbjct: 423 GRVEDA 428
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 5/189 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +G+ + Y++++ Y G ++ L+ M G+ D TY T ++ Y S
Sbjct: 505 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E + ME+ V+ D + Y + G + A + E G ++ S
Sbjct: 565 MEDALVLFREMESS-GVSPDIITYNIILQGLFQTRRTAAAKELYVGITES--GTQLELST 621
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+IL K D+ LR+++ L +++ + +I +LLK+ + A+ +F
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 182 SQALCYDTR 190
+ L D R
Sbjct: 682 ANGLVPDVR 690
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 120/253 (47%), Gaps = 11/253 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+ MR G+ ++ VY S++ Y + E+ S + +M+E G+ TY + +A
Sbjct: 325 FESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIVVGGFAK 384
Query: 60 --DASDHEGIDK----ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
+A +D+ + M E + +D IY T+ NGY +G +K L + K+ +E
Sbjct: 385 IGNADQSCNMDRAESLVREMEEEGIDAPID--IYHTMMNGYTMIGNEEKCLIVFKRLKEC 442
Query: 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLES 172
V S Y ++ +Y K GK L + ++ + A +K Y +I+ LKL D +
Sbjct: 443 GFAPSVIS-YGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTN 501
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A +FE+ L D + N +I +C G +++A ++V + K +++ +
Sbjct: 502 AFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIH 561
Query: 233 GYRQNSQIHKAVE 245
G+ + ++ +A+E
Sbjct: 562 GFARAGEMRRALE 574
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R T VYN ++ + + G+ + LM +M++ G+ D +TY + ++A A
Sbjct: 682 REMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKA 741
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D K + MEA PNV Y T+ +G+ L +KAL + E ++ G K
Sbjct: 742 GDMLRATKTIQEMEALGVKPNVK----TYTTLIHGWACASLPEKALRCFE--EMKLAGLK 795
Query: 119 VNSA-YNVILT 128
+ A Y+ ++T
Sbjct: 796 PDKAVYHCLMT 806
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 102/247 (41%), Gaps = 15/247 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T +N+++ + EK ++ EM G++ D +TY T ++ YA D
Sbjct: 579 MRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGD 638
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T + + + LD Y + K G + ALA+ ++ Q + Y
Sbjct: 639 TGKAFEYFTKLRNE-GLELDVFTYEALLKACCKSGRMQSALAVTREMSAQ-NIPRNTFVY 696
Query: 124 NVILTLYGKYGKKDDVLRIWE-------LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
N+++ + + G +WE + ++ V+ + Y + I++ K D+ A K
Sbjct: 697 NILIDGWARRGD------VWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKT 750
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+E E+ + + + LI + L EKA KL G + ++ L T
Sbjct: 751 IQEMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLS 810
Query: 237 NSQIHKA 243
+ + +A
Sbjct: 811 RATVAEA 817
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 19/229 (8%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V+YN+++K + GN ++ ++ EM++ T+ + +A A +
Sbjct: 513 GLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRA 572
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE--EQIKGAKVNSAYNV 125
+I MM + A V +GL++K M K E +++ A V+ +
Sbjct: 573 LEIFDMMRRSGCIPTVHTFNALV------LGLVEKR-QMEKAVEILDEMALAGVSPDEHT 625
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFE 178
T+ Y D + +E + K+ N G Y ++ + K ++SA +
Sbjct: 626 YTTIMNGYAALGDTGKAFEYF---TKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTR 682
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
E +Q + +T + N LID + R G + +A +L+ K +G + + ++
Sbjct: 683 EMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTY 731
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 58/297 (19%), Positives = 118/297 (39%), Gaps = 45/297 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ +Y++M+ Y GN EK + ++E G
Sbjct: 401 VREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFA--------------- 445
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
P+V + Y + N Y K+G + KAL + K E G K N
Sbjct: 446 -----------------PSV----ISYGCLINMYTKMGKVSKALEVSKMMESA--GIKHN 482
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y++++ + K + ++E + K +K Y N+I + + +++ A + +
Sbjct: 483 MKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVK 542
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + +R +I + R G + +A + + + G V ++ L G +
Sbjct: 543 EMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKR 602
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
Q+ KAVE + ++ L P + ++ + GD G A + L ++G
Sbjct: 603 QMEKAVEILDEM-----ALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGL 654
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 108/219 (49%), Gaps = 5/219 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G+ + +NS++ + + G +E + EM+ GI D +T+ T + A
Sbjct: 296 EMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGG 355
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVNS 121
E I+T M N++ + V Y+T+ +GYGK+G ++A+++ +E ++ +V+
Sbjct: 356 QMELAASIMTTMRGK-NISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVS- 413
Query: 122 AYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ +Y K G+ DD L ++ + +K Y +I + K + A +F++
Sbjct: 414 -YNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKM 472
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ + L + + LID Y + G+ + N+ K G
Sbjct: 473 KGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAG 511
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 124/280 (44%), Gaps = 16/280 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M MR ++ V Y++M+ Y K G FE+ SL H+M+E+G+ DR +Y T + YA
Sbjct: 364 MTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAK 423
Query: 61 ASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D L + V L D V Y + + YGK G A + K + +
Sbjct: 424 LGR---FDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPN 480
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIF 177
V + Y+ ++ Y K G DV ++ +K+A +K Y ++I S K +E A +
Sbjct: 481 VLT-YSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLL 539
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAE----NLVNH-EKLKGREIHVKSWYYLAT 232
+E + + N LID Y R G +K E N+ N +K+ R + V
Sbjct: 540 QEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSMEV---VRKPP 596
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272
+QN+ H V A V Q KP+V + +A L+
Sbjct: 597 PSQQNASDHTGVLAAVSVFHEMQQF-GLKPNVVTFSAILN 635
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 11/200 (5%)
Query: 95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN 154
G++G ++ AL + ++++ G V AY+ +++ YG+ G+ + L++++ KKA N
Sbjct: 211 GRLGKVEIALDVFNRAQKAGFGNNV-YAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPN 269
Query: 155 -NGYRNVISSLLKLD-DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
Y +I + K DL+ A IF+E + + + D N LI V R GL E ++ +
Sbjct: 270 LITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVF 329
Query: 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272
+ +G E + ++ L + Q+ A M + + P+V + + +D
Sbjct: 330 AEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNIS-----PNVVTYSTMID 384
Query: 273 YFKDEGDIGGAENFIELLND 292
+ G +G E I L +D
Sbjct: 385 GY---GKLGCFEEAISLYHD 401
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKK-DDVLRIW- 143
Y+ + + YG+ G +AL + + ++ G K N YN I+ GK G L I+
Sbjct: 238 YSAMVSAYGRSGRCREALKVFQAMKK--AGCKPNLITYNTIIDACGKGGVDLKQALDIFD 295
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
E+ K+ V+ + ++I+ + E ++++F E + + + D N LID C+ G
Sbjct: 296 EMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGG 355
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+E A +++ + K +V ++ + GY
Sbjct: 356 QMELAASIMTTMRGKNISPNVVTYSTMIDGY 386
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 127/279 (45%), Gaps = 16/279 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M G+ + YNS+L + + G +E +L +EM + GI D +TY T L A
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +I+ M PNV V Y+T+ +GY K G L+ AL + +E + G
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNV----VTYSTMADGYAKAGRLEDALNLY--NEMKFLGI 394
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
++ +YN +L++Y K G+ +D L++ E+ VK Y ++ K +
Sbjct: 395 GLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTR 454
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+E + + + + LIDVY + L E+A + K G + V + L
Sbjct: 455 VFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALC 514
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF 274
+N + AV +L T +P+V + + +D F
Sbjct: 515 KNGLVDSAV-----LLLDEMTKEGIRPNVVTYNSIIDAF 548
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 12/217 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M + V Y++M Y K G E +L +EM+ GI DR +Y T LS YA
Sbjct: 351 MLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAK 410
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E K+ M V D V Y + +GYGK G ++ + K ++K +V
Sbjct: 411 LGRFEDALKVCKEM-GSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFK----EMKKDRVF 465
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKI 176
Y+ ++ +Y K ++ + ++ +K+A +K Y +I++L K ++SA +
Sbjct: 466 PNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLL 525
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+E + + + N +ID + R+ AE LV+
Sbjct: 526 LDEMTKEGIRPNVVTYNSIIDAFGRS---TTAEFLVD 559
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 21/213 (9%)
Query: 95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVL 153
G++G ++ A + + + + G V A++ +++ YGK G D+ ++++E K +K
Sbjct: 198 GRLGKVELAKGVFETALSEGYGNTV-FAFSALISAYGKSGYFDEAIKVFESMKVSGLKPN 256
Query: 154 NNGYRNVISSLLKLD-DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
Y VI + K + + +IFEE + D N L+ V R GL E A NL
Sbjct: 257 LVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLF 316
Query: 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESL 267
N +G + V ++ L + Q+ A E M KK+L P+V +
Sbjct: 317 NEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKIL----------PNVVTY 366
Query: 268 AACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+ D + G + E+ + L N+ F+ L
Sbjct: 367 STMADGYAKAGRL---EDALNLYNEMKFLGIGL 396
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 127/279 (45%), Gaps = 16/279 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M G+ + YNS+L + + G +E +L +EM + GI D +TY T L A
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +I+ M PNV V Y+T+ +GY K G L+ AL + +E + G
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNV----VTYSTMADGYAKAGRLEDALNLY--NEMKFLGI 394
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
++ +YN +L++Y K G+ +D L++ E+ VK Y ++ K +
Sbjct: 395 GLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTR 454
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+E + + + + LIDVY + L E+A + K G + V + L
Sbjct: 455 VFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALC 514
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF 274
+N + AV +L T +P+V + + +D F
Sbjct: 515 KNGLVDSAV-----LLLDEMTKEGIRPNVVTYNSIIDAF 548
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 9/210 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M + V Y++M Y K G E +L +EM+ GI DR +Y T LS YA
Sbjct: 351 MLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAK 410
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E K+ M V D V Y + +GYGK G ++ + K ++K +V
Sbjct: 411 LGRFEDALKVCKEM-GSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFK----EMKKDRVF 465
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKI 176
Y+ ++ +Y K ++ + ++ +K+A +K Y +I++L K ++SA +
Sbjct: 466 PNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLL 525
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
+E + + + N +ID + R+ E
Sbjct: 526 LDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 21/213 (9%)
Query: 95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVL 153
G++G ++ A + + + + G V A++ +++ YGK G D+ ++++E K +K
Sbjct: 198 GRLGKVELAKGVFETALSEGYGNTV-FAFSALISAYGKSGYFDEAIKVFESMKVSGLKPN 256
Query: 154 NNGYRNVISSLLKLD-DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
Y VI + K + + +IFEE + D N L+ V R GL E A NL
Sbjct: 257 LVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLF 316
Query: 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESL 267
N +G + V ++ L + Q+ A E M KK+L P+V +
Sbjct: 317 NEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKIL----------PNVVTY 366
Query: 268 AACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+ D + G + E+ + L N+ F+ L
Sbjct: 367 STMADGYAKAGRL---EDALNLYNEMKFLGIGL 396
>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 613
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 137/293 (46%), Gaps = 12/293 (4%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D+ + T+V + + K G E+ LM EM GI + TY T ++AY D E
Sbjct: 212 DVTVYSMTIVIDGLCK----KGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFE 267
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
G++++L +ME D V + Y + YG G + +A + +K E+ A ++ +
Sbjct: 268 GVNEMLRLMEMD-KVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIH-VFTS 325
Query: 126 ILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
I++ K G ++ EL ++ + + Y +I L++AE + E +SQ
Sbjct: 326 IISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQG 385
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
L + I N LI+ YC+ G++++A + + + KG E + ++ +A G ++++
Sbjct: 386 LDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGL---CKLNRHE 442
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
EA + + + V P+ S +D EG++ AE + + KG P
Sbjct: 443 EAKRWLFTMVEKGV--DPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKP 493
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 127/287 (44%), Gaps = 36/287 (12%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM + G+ V+ S++ K GN ++ +L E+ E G+ + +TY + ++
Sbjct: 309 EKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNS 368
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM--------------- 106
+ + ++ M++ + ++ VI+ T+ NGY K G++D+AL M
Sbjct: 369 GQLDAAEMLVNEMQSQ-GLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFT 427
Query: 107 ----------LKKSEEQI--------KGAKVNS-AYNVILTLYGKYGKKDDVLRIWE-LY 146
L + EE KG N+ ++ +++ ++ K G + R+++ +
Sbjct: 428 YNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMK 487
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
KK K Y +I K L+ A ++ +E ES + D L+ C G +E
Sbjct: 488 KKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVE 547
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
+A L+N KG I + ++ + +G + + +A +++AA
Sbjct: 548 EALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAA 594
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 42/281 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M G+ V YN+++ Y K +FE ++ ++ ME + + Y+ TY + Y
Sbjct: 238 MLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGS 297
Query: 61 ASDHEGIDKILTMM-----EADPNV---ALDWVI-------------------------- 86
+ +K+ M EAD +V + W
Sbjct: 298 SGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHT 357
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIWEL 145
Y + +G G LD A ++ +E Q +G +N +N ++ Y K G D+ LR+ ++
Sbjct: 358 YGALIHGTCNSGQLDAAEMLV--NEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDV 415
Query: 146 YKKAVKVLNN---GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
+K K N Y + L KL+ E A++ + + + +ID++C+
Sbjct: 416 MEK--KGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKE 473
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
G L +AE + K KG + +V ++ L GY + ++ +A
Sbjct: 474 GNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEA 514
>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 136/302 (45%), Gaps = 10/302 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++R G+ T YN++LK Y KTG + + ++ EME+ G++ D +TY + AY +
Sbjct: 329 FEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVN 388
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L ME +V + +++ + GY G K +LK E + G K +
Sbjct: 389 AGRWESARIVLKEMETG-DVQPNSFVFSRLLAGYRDRGEWQKTFQVLK--EMKSIGVKPD 445
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ +GK+ D + ++ + + ++ + +I K AE++FE
Sbjct: 446 RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFE 505
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + N +I+ Y + + L+ K +G +V + L Y ++
Sbjct: 506 AMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSG 565
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ + A+E ++++ + V KPS A ++ + G A N ++ G P+
Sbjct: 566 RFNDAIECLEEMKS-----VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPS 620
Query: 299 DL 300
L
Sbjct: 621 LL 622
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/299 (19%), Positives = 127/299 (42%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G++ Y+ ++ Y G +E ++ EME + + + + L+ Y D
Sbjct: 364 VSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRD 423
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKV 119
+ + ++L M++ V D Y V + +GK LD A+ + E I+ +V
Sbjct: 424 RGEWQKTFQVLKEMKSI-GVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRV 482
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+N ++ + K+G+ ++E + ++ Y +I+S + + +++
Sbjct: 483 T--WNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLG 540
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ +SQ + + L+DVY ++G A + K G + + L Y Q
Sbjct: 541 KMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRG 600
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+AV A + + T KPS+ +L + ++ F ++ A ++ + + G P
Sbjct: 601 LSEQAVNAFRVM-----TSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKP 654
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 9/216 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ T S++ +G + ++L E+ ++GI Y L Y +
Sbjct: 301 GLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDA 360
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ +++ ME V+ D Y+ + + Y G + A +LK E + + NS ++ +
Sbjct: 361 ELMVSEMEKR-GVSPDEHTYSLLIDAYVNAGRWESARIVLK--EMETGDVQPNSFVFSRL 417
Query: 127 LTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L Y G++ K VL+ E+ VK Y VI + K + L+ A F+ S+
Sbjct: 418 LAGYRDRGEWQKTFQVLK--EMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE 475
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ D N LID +C++G AE + + +G
Sbjct: 476 GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 511
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 133/291 (45%), Gaps = 7/291 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+A YN +++ G E+ ++ +M G + TY T ++A+ A + +G
Sbjct: 5 GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
++++++M + N + V + ++ NG K G ++ A + + + V S YN +L
Sbjct: 65 ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVS-YNTLL 123
Query: 128 TLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+ Y K G + L ++ E+ ++ + + ++I + K +LE A + + + L
Sbjct: 124 SGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR 183
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
+ LID +C+ G L+ A V + G + V + L GY + ++ A E
Sbjct: 184 MNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAREL 243
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++++ A + KP V + + + + G++ A + + KG +P
Sbjct: 244 IREMEAK-----RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLP 289
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 115/247 (46%), Gaps = 11/247 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M GL V + S++ K GN E+ +L+ +M E G+ + T+ +A D
Sbjct: 140 SEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF----TALIDG 195
Query: 62 SDHEGI--DKILTMMEA-DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGA 117
+G D +L + E + V Y + NGY K+G +D A ++++ E +++K
Sbjct: 196 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 255
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V Y+ I++ Y K G D ++ ++ KK V Y ++I L + L A ++
Sbjct: 256 VVT--YSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 313
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FE + D LID +C+ G +EKA +L + KG V ++ L G +
Sbjct: 314 FENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 373
Query: 237 NSQIHKA 243
+++ +A
Sbjct: 374 SARTKEA 380
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 16/256 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNF---EKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MR G A V YN+++ + + G E++ SLM EE + T+ + ++
Sbjct: 36 MRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMR--EEGNAKPNLVTFNSMVNGLCK 93
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A EG K+ M + +A D V Y T+ +GY KVG L ++LA+ + ++ V
Sbjct: 94 AGRMEGARKVFDEMVRE-GLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVV 152
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ ++I + V + ++ ++ +++ + +I K L+ A EE
Sbjct: 153 TFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEM 212
Query: 181 -----ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ +CY N LI+ YC+ G ++ A L+ + K + V ++ + +GY
Sbjct: 213 RKCGIQPSVVCY-----NALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 267
Query: 236 QNSQIHKAVEAMKKVL 251
+ + A + +K+L
Sbjct: 268 KVGNLDSAFQLNQKML 283
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 72/356 (20%), Positives = 136/356 (38%), Gaps = 72/356 (20%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+++MR G+ + V YN+++ Y K G + L+ EME + D TY T +S Y
Sbjct: 209 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 268
Query: 60 ---------------------DASDHEGIDKILT--------------MMEADPNVALDW 84
DA + + + L M++ V D
Sbjct: 269 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL--GVQPDE 326
Query: 85 VIYATVGNGYGKVGLLDKALA----MLKKS------------EEQIKGAKVNSAYNVILT 128
Y T+ +G+ K G ++KAL+ M++K K A+ A+ ++
Sbjct: 327 FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFK 386
Query: 129 LYGKYGKKDDV------LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
LY + D++ L + K+V L G+ + L+K A+K+++
Sbjct: 387 LYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGF--CMKGLMK-----EADKVYQSMLD 439
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D + + LI +CR G + KA + G + S L G + + +
Sbjct: 440 RNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVE 499
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
A A++ +L E+ A +D + EG++ + + + G +P+
Sbjct: 500 ADNAIQDLLTCCPL-----ADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPS 550
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 19/297 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MRD G+ VYN+M+ K G E++ ++ EME+ G+ D+Y+Y T + Y
Sbjct: 349 EMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREG 408
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA----MLKKSEEQIKGAK 118
++ MM + +A + Y T+ G+ + +D AL MLK +G
Sbjct: 409 SMRKAFEMCRMMVRN-GLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLK------RGVA 461
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
N + + +L K GK + L +W E + + + VI+ L K+ + AE++
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEEL 521
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ + D+ L D YC+ G L A +L+N + G V+ + TG+
Sbjct: 522 LDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFI 581
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN-FIELLND 292
Q HK + ++ A P++ + A + + EG++ A N + E++N+
Sbjct: 582 AKQWHKVNDIHSEMSAR-----GLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNN 633
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 8/210 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR G+ M K Y + G + + EME G+ + Y + Y
Sbjct: 208 QMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMG 267
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E +IL ++ PNV V Y + GY K G +++A ++K+ +E
Sbjct: 268 WTEDARRILESLQRKGLSPNV----VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVD 323
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
AY +++ Y + G+ DD R+ E+ + V Y +I+ L KL +E +K+ +
Sbjct: 324 EVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQ 383
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E E + D N LID YCR G + KA
Sbjct: 384 EMEDVGMRPDKYSYNTLIDGYCREGSMRKA 413
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 33/248 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M KM LG A + ++NS + ++ + K++ + EM G++ + TY ++ +
Sbjct: 557 MNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616
Query: 61 ASD-HEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--SEEQIK 115
+ HE + M+ +PNV I + + + + K G +D+A +L+K + + I
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNV----FICSALMSCFYKEGKVDEANLVLQKLVNIDMIP 672
Query: 116 GAKV-----------------------NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK 151
G + N +NVI+ K G+ D ++E L K
Sbjct: 673 GCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFL 732
Query: 152 VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
N Y ++I ++ A + + S L + N LI C++G L +A NL
Sbjct: 733 PDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNL 792
Query: 212 VNHEKLKG 219
N + KG
Sbjct: 793 FNKLQSKG 800
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
QKM + G+ T + Y+ ++ G E+ L+ +M EN + + TYCT + Y +
Sbjct: 829 QKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKS 888
Query: 62 SDHEGIDKILTMMEADPNVALDWV 85
+ E I K+ M + +W+
Sbjct: 889 GNMEEISKLYDEMHIRGLLPTNWI 912
>gi|428179975|gb|EKX48844.1| hypothetical protein GUITHDRAFT_68401 [Guillardia theta CCMP2712]
Length = 396
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 131/295 (44%), Gaps = 10/295 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ G+ Y + + Y K G+ E +++ M +GI T+ T + YA
Sbjct: 34 LTRMKSDGIMPNVWAYTTCIDAYCKVGDMEMAENIKSMMISSGIEPTLATFTTLMKGYAK 93
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+HE ++ L +M+ + N+ +D I + + + + G +++A A+L++ E + +
Sbjct: 94 YGNHEALEHYLEIMQQE-NIMIDSYIVSILIDSFVNKGDMERAEAILREKEAEDPSLLSS 152
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++ YG+ G D + + E K K +KV Y +IS+LL+ ++ A+K E+
Sbjct: 153 HLYASLIKGYGRKGMIDRCMALMEEMKSKQLKVSAVPYNTLISALLESKRMDQAQKTLEQ 212
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E + LI + G + +A+ + G ++ L GY Q
Sbjct: 213 MEEAGIQPSVVTYTLLIHEFSSAGNVAQAQAAFETMERSGIFPDTGAYNALLDGYASLGQ 272
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVES---LAACLDYFKDEGDIGGAENFIELLN 291
+ E K++ + KPS+E+ + CL + D +EN E ++
Sbjct: 273 TARMKEIFWKLMQSAN-----KPSIETYSIMIKCLLHSDASDDAKKSENLRECMS 322
>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Glycine max]
Length = 587
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 11/256 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M +G+ +YN + K+G+ E+ + L++EM+ G+ D +TY T LS Y
Sbjct: 185 KRMVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKK 244
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
H I ME + + LD V Y ++ G+ K G + +A+ M +IK A N
Sbjct: 245 GMHYEALSIQNRMERE-GINLDIVSYNSLIYGFCKEGRMREAMRMF----SEIKNATPNH 299
Query: 122 A-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG---YRNVISSLLKLDDLESAEKIF 177
Y ++ Y K + ++ L++ +L + K L G Y +++ L + + A K+
Sbjct: 300 VTYTTLIDGYCKTNELEEALKMCKLME--AKGLYPGVVTYNSILRKLCQDGRIRDANKLL 357
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + L D N LI+ YC+ G L+ A N G + ++ L G+ +
Sbjct: 358 NEMSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKT 417
Query: 238 SQIHKAVEAMKKVLAA 253
+++ A E M +L A
Sbjct: 418 NELESAKELMFSMLDA 433
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 19/297 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MRD G+ VYN+M+ K G E++ ++ EME+ G+ D+Y+Y T + Y
Sbjct: 349 EMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREG 408
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA----MLKKSEEQIKGAK 118
++ MM + +A + Y T+ G+ + +D AL MLK +G
Sbjct: 409 SMRKAFEMCRMMVRN-GLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLK------RGVA 461
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
N + + +L K GK + L +W E + + + VI+ L K+ + AE++
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEEL 521
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ + D+ L D YC+ G L A +L+N + G V+ + TG+
Sbjct: 522 LDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFI 581
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN-FIELLND 292
Q HK + ++ A P++ + A + + EG++ A N + E++N+
Sbjct: 582 AKQWHKVNDIHSEMSAR-----GLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNN 633
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 8/210 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR G+ M K Y + G + + EME G+ + Y + Y
Sbjct: 208 QMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMG 267
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E +IL ++ PNV V Y + GY K G +++A ++K+ +E
Sbjct: 268 WTEDARRILESLQRKGLSPNV----VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVD 323
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
AY +++ Y + G+ DD R+ E+ + V Y +I+ L KL +E +K+ +
Sbjct: 324 EVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQ 383
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E E + D N LID YCR G + KA
Sbjct: 384 EMEDVGMRPDKYSYNTLIDGYCREGSMRKA 413
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 33/248 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M KM LG A + ++NS + ++ + K++ + EM G++ + TY ++ +
Sbjct: 557 MNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616
Query: 61 ASD-HEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--SEEQIK 115
+ HE + M+ +PNV I + + + + K G +D+A +L+K + + I
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNV----FICSALMSCFYKEGKVDEANLVLQKLVNIDMIP 672
Query: 116 GAKV-----------------------NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK 151
G + N +NVI+ K G+ D ++E L K
Sbjct: 673 GCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFL 732
Query: 152 VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
N Y ++I ++ A + + S L + N LI C++G L +A NL
Sbjct: 733 PDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNL 792
Query: 212 VNHEKLKG 219
N + KG
Sbjct: 793 FNKLQSKG 800
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 135/298 (45%), Gaps = 7/298 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M G+A YN +++ G E+ ++ +M G + TY T ++A+
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + +G ++++++M + N + V + ++ NG K G ++ A + + + V
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVV 259
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S YN +L+ Y K G + L ++ E+ ++ + + ++I + K +LE A + +
Sbjct: 260 S-YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQ 318
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L + LID +C+ G L+ A V + G + V + L GY + +
Sbjct: 319 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGR 378
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ A E ++++ A + KP V + + + + G++ A + + KG +P
Sbjct: 379 MDLARELIREMEAK-----RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLP 431
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 11/248 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M GL V + S++ K GN E+ +L+ +M E G+ + T+ +A D
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF----TALID 336
Query: 61 ASDHEGI--DKILTMMEA-DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKG 116
+G D +L + E + V Y + NGY K+G +D A ++++ E +++K
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKP 396
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
V Y+ I++ Y K G D ++ ++ KK V Y ++I L + L A +
Sbjct: 397 DVVT--YSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+FE + D LID +C+ G +EKA +L + KG V ++ L G
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 514
Query: 236 QNSQIHKA 243
++++ +A
Sbjct: 515 KSARTKEA 522
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 136/357 (38%), Gaps = 72/357 (20%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+++MR G+ + V YN+++ Y K G + L+ EME + D TY T +S Y
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410
Query: 60 ---------------------DASDHEGIDKILT--------------MMEADPNVALDW 84
DA + + + L M++ V D
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL--GVQPDE 468
Query: 85 VIYATVGNGYGKVGLLDKALA----MLKKS------------EEQIKGAKVNSAYNVILT 128
Y T+ +G+ K G ++KAL+ M++K K A+ A+ ++
Sbjct: 469 FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFK 528
Query: 129 LYGKYGKKDDV------LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
LY + D++ L + K+V L G+ + L+K A+K+++
Sbjct: 529 LYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGF--CMKGLMK-----EADKVYQSMLD 581
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D + + LI +CR G + KA + G + S L G + + +
Sbjct: 582 RNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVE 641
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
A A++ +L E+ A +D + EG++ + + + G +P+
Sbjct: 642 ADNAIQDLLTCCPL-----ADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSS 693
>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 134/302 (44%), Gaps = 10/302 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MRD GL T YN++L+ Y K G + ++ EME +G+ + TY + AY +
Sbjct: 329 FEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGN 388
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L MEA NV + +++ + Y G K +L++ E+ G + +
Sbjct: 389 AERWESARIVLKEMEAS-NVQPNAYVFSRILASYRDKGEWQKTFQVLREMED--SGVRPD 445
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ +GK+ D + ++ + + ++ + ++ K + AE++FE
Sbjct: 446 RIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFE 505
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + N +I+ + + +NL+ + + +G + ++ L Y ++
Sbjct: 506 EMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSG 565
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A+E + + AA KPS A L+ + G A + + D G P+
Sbjct: 566 RFDDAIECLDDMKAA-----GLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPS 620
Query: 299 DL 300
L
Sbjct: 621 LL 622
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 122/299 (40%), Gaps = 47/299 (15%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYADASDHEGIDK 69
T + YN+++ + + EK +L+ M E+G D Y+ R + ++ + K
Sbjct: 198 TPLTYNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKNNRANSSILQK 257
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129
I ++ D + +D ++ + G+ K G LDKAL L ++G+ ++ ++T+
Sbjct: 258 IYREIDRD-KLEVDVQLWNDIIVGFAKAGDLDKALEFLGV----VQGSGLSVKTATLVTV 312
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
IW L N R E AE IFEE L T
Sbjct: 313 ------------IWG--------LGNCGRT-----------EEAEAIFEEMRDNGLQPRT 341
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
R N L+ Y + GLL AE +V+ + G + +++ L Y + A +K+
Sbjct: 342 RAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKE 401
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV 308
+ A+ +P+ + L ++D+G+ + + D G P D++ NV
Sbjct: 402 MEAS-----NVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRP----DRIFYNV 451
>gi|359484901|ref|XP_002268952.2| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial [Vitis vinifera]
Length = 396
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 102/218 (46%), Gaps = 14/218 (6%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+++++ + ++YN M+ LY G EK+ ++ E++ + D +TY +S+ A
Sbjct: 169 ERIKESNVPLNILLYNEMMTLYMSVGQVEKVSLVVEELKRQKVVPDLFTYNLWVSSCAAT 228
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D +G+ +IL M + + WV Y + N Y G L + + + A N+
Sbjct: 229 LDIDGVRRILKEMSNNSSANDGWVRYRNLANIYIMAGHL------VNSASNSVVEAGTNT 282
Query: 122 ------AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAE 174
Y+ ++ LY G KD + +IW+ K K+ + Y ++SS + L ++
Sbjct: 283 TQRDWITYDFLIILYAGLGNKDKIDQIWKSLKMTKQKIKSRSYVCILSSYVMLGHIKDVG 342
Query: 175 KIFEEW-ESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ +EW +S +D + L+D + L+E+AE
Sbjct: 343 IVIDEWKKSTTTDFDISVFYRLLDAFAELRLIEEAETF 380
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 135/298 (45%), Gaps = 7/298 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M G+A YN +++ G E+ ++ +M G + TY T ++A+
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + +G ++++++M + N + V + ++ NG K G ++ A + + + V
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVV 259
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S YN +L+ Y K G + L ++ E+ ++ + + ++I + K +LE A + +
Sbjct: 260 S-YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQ 318
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L + LID +C+ G L+ A V + G + V + L GY + +
Sbjct: 319 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGR 378
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ A E ++++ A + KP V + + + + G++ A + + KG +P
Sbjct: 379 MDLARELIREMEAK-----RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLP 431
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 19/252 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M GL V + S++ K GN E+ +L+ +M E G+ + T+ +A D
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF----TALID 336
Query: 61 ASDHEGI--DKILTMMEA-----DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-E 112
+G D +L + E P+V V Y + NGY K+G +D A ++++ E +
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSV----VCYNALINGYCKLGRMDLARELIREMEAK 392
Query: 113 QIKGAKVNSAYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLE 171
++K V Y+ I++ Y K G D ++ ++ KK V Y ++I L + L
Sbjct: 393 RVKPDVVT--YSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLN 450
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A ++FE + D LID +C+ G +EKA +L + KG V ++ L
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 510
Query: 232 TGYRQNSQIHKA 243
G ++++ +A
Sbjct: 511 NGLSKSARTKEA 522
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 133/348 (38%), Gaps = 84/348 (24%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+++MR G+ + V YN+++ Y K G + L+ EME + D TY T +S Y
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410
Query: 60 ---------------------DASDHEGIDKILT--------------MMEADPNVALDW 84
DA + + + L M++ V D
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL--GVQPDE 468
Query: 85 VIYATVGNGYGKVGLLDKALA----MLKKS------------EEQIKGAKVNSAYNVILT 128
Y T+ +G+ K G ++KAL+ M++K K A+ A+ ++
Sbjct: 469 FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFK 528
Query: 129 LYGKYGKKDDV------LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
LY + D++ L + K+V L G+ + L+K A+K+++
Sbjct: 529 LYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGF--CMKGLMK-----EADKVYQSMLD 581
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D + + LI +CR G + KA + G + S L G + + +
Sbjct: 582 RNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVE 641
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAA----------CLDYFKDEGDI 280
A A+ Q L+ P ++ A+ +DYF+ +G+I
Sbjct: 642 ADNAI-------QDLLTCCPLADAEASKALIDLNRKEGMDYFQAQGEI 682
>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 130/280 (46%), Gaps = 10/280 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MRD GL T YN++L+ Y K G + + ++ EME +G++ + TY + AY +
Sbjct: 328 FEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGN 387
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKV 119
A E +L MEA NV + +++ + + Y G K+ +L++ E ++ +V
Sbjct: 388 AGRWESARIVLKEMEAS-NVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRV 446
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ +GK+ D + ++ + + ++ + +I + + AE++FE
Sbjct: 447 --FYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFE 504
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E N +I+ + + +NL+ H + +G + ++ L Y ++
Sbjct: 505 EMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSG 564
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG 278
+ + A+E + + AA KPS A ++ + G
Sbjct: 565 RFNDAIECLDDMKAA-----GLKPSSTMYNALINAYAQRG 599
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 12/291 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G++ Y+ ++ Y G +E ++ EME + + + Y + LS+Y D
Sbjct: 363 VSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRD 422
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKV 119
+ + ++L ME + V D V Y + + +GK LD A+A + E I+ V
Sbjct: 423 KGEWQKSFQVLREME-NSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTV 481
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+N ++ + + GK D ++ E+ + N + +I+S + + + +
Sbjct: 482 T--WNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLA 539
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
SQ L ++ LID+Y ++G A ++ K G + + L Y Q
Sbjct: 540 HMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRG 599
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289
+AV A + + + KPS+ +L + ++ F + D AE F L
Sbjct: 600 LSEQAVSAFRAM-----RVDGLKPSLLALNSLINAFGE--DRRDAEAFTVL 643
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ T +++ G + +++ EM +NG+ Y L Y A +
Sbjct: 300 GLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDA 359
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ +++ ME V+ + Y+ + + YG G + A +LK E + + N+ ++ I
Sbjct: 360 EFVVSEMERS-GVSPNEQTYSFLIDAYGNAGRWESARIVLK--EMEASNVQPNAYVFSRI 416
Query: 127 LTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L+ Y G++ K VLR E+ V+ Y +I + K + L+ A F+ S+
Sbjct: 417 LSSYRDKGEWQKSFQVLR--EMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSE 474
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ DT N LID +CR G ++AE L E ++G
Sbjct: 475 GIEPDTVTWNTLIDCHCRAGKHDRAEELF-EEMMEG 509
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 119/299 (39%), Gaps = 47/299 (15%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYADASDHEGIDK 69
T + YN+++ + + EK +L+ M ++G D Y+ R + D + K
Sbjct: 197 TPLTYNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSAILQK 256
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129
+ +E D + LD + + G+ K G L KAL L Q G V +A V +
Sbjct: 257 LYREIECD-KLELDVQLSNDIIVGFAKAGDLSKALEFL--GVVQGSGLSVKTATLVAV-- 311
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
IW L N R V AE IFEE L T
Sbjct: 312 ------------IW--------ALGNCGRTV-----------EAEAIFEEMRDNGLKPRT 340
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
R N L+ Y + GLL+ AE +V+ + G + +++ +L Y + A +K+
Sbjct: 341 RAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKE 400
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV 308
+ A+ +P+ + L ++D+G+ + + + + G P D++ NV
Sbjct: 401 MEAS-----NVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRP----DRVFYNV 450
>gi|302782563|ref|XP_002973055.1| hypothetical protein SELMODRAFT_413483 [Selaginella moellendorffii]
gi|300159656|gb|EFJ26276.1| hypothetical protein SELMODRAFT_413483 [Selaginella moellendorffii]
Length = 547
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 7/238 (2%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
R+ N ML LY K F K+ L+ + EE G + + ++ L A ++ +
Sbjct: 192 RSISPINMMLTLYQKHQVFWKVAELIRDAEEAGQSLNMCSFNILLPMTFRAGGVAEMESL 251
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS---AYNVIL 127
+ MME+ LD Y + + YG+ G++DKA ML E+ ++ K N YNVI+
Sbjct: 252 VEMMESKN--FLDEHTYCMLASSYGRAGMVDKAKEMLMVVEDGMETGKFNRLRRTYNVII 309
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+YG G + V RIW++ + + Y +I S K+ E AE F +Q +
Sbjct: 310 VIYGFIGDVEGVKRIWDITSRMDPTAED-YICMIRSSAKVGLFELAESGFLALAAQRKMH 368
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
T + N ++ V + +AE+L+ G + ++++L + +N I +A++
Sbjct: 369 IT-VCNVMLQVCQAGNFVLRAESLLRKIHQMGFKPDPATYHHLIAIHLKNDNIQRALD 425
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 16/250 (6%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V+YN + + K G + HE++ G+ D T+ + + A E +D+ + +
Sbjct: 273 VLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKA---ERVDEAVEL 329
Query: 74 MEA-DPNVALDWV-IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--AYNVILTL 129
E D N ++ V Y T+ GYG VG ++A ++L E Q + + S AYN ILT
Sbjct: 330 FEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLL---ERQKRKGCIPSVIAYNCILTC 386
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
G+ GK ++ LRI E K Y +I L K +LE+A K+ + + L +
Sbjct: 387 LGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNI 446
Query: 190 RIPNFLIDVYCRNGLLEKAENL---VNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
N +ID C+ L++A ++ ++H+ + ++ L G ++ +++ A
Sbjct: 447 ITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSV---TFCSLIDGLGRHGKVNDAYML 503
Query: 247 MKKVLAAYQT 256
+K+L + QT
Sbjct: 504 YEKMLDSGQT 513
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 11/248 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM D G VVY S+++ ++K G E + EM G + D L+ Y D
Sbjct: 505 EKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLML----LNNYMDC 560
Query: 62 SDHEG-IDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
G I+K + E L D Y+ + +G K G + + +EQ G
Sbjct: 561 VFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQ--GLH 618
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+++ AYN+++ + K GK + ++ E K K ++ Y +VI L K+D L+ A +
Sbjct: 619 LDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYML 678
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FEE +S+A+ + + + LID + + G +++A ++ KG + +W L +
Sbjct: 679 FEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVK 738
Query: 237 NSQIHKAV 244
+I +A+
Sbjct: 739 AEEIDEAL 746
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 136/324 (41%), Gaps = 56/324 (17%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGI----------------------------TYD 47
YN++L L +T N E L+ ++ EM G T
Sbjct: 135 YNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMR 194
Query: 48 RYTYCTRLSAY-----ADASDHEGIDKILTMMEADPNVALDWVI--YATVGNGYGKVGLL 100
++ + SAY A ++ HE D +LT++ + + + + T+ + + G +
Sbjct: 195 KFKFRPAYSAYTTLIGALSAAHEA-DPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRV 253
Query: 101 DKALAMLKKSEEQIKGAKVNS---AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNG 156
D AL++L +++K N+ YNV + +GK GK D + + EL + + +
Sbjct: 254 DAALSLL----DEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVT 309
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
+ ++I L K + ++ A ++FEE +S N +I Y G +A +L+ +K
Sbjct: 310 FTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQK 369
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKA---VEAMKKVLAAYQTLVKWKPSVESLAACLDY 273
KG V ++ + T + ++ +A +EAMK + P++ S +D
Sbjct: 370 RKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMK---------MDAAPNLTSYNILIDM 420
Query: 274 FKDEGDIGGAENFIELLNDKGFIP 297
G++ A + + + G P
Sbjct: 421 LCKAGELEAALKVQDSMKEAGLFP 444
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 131/329 (39%), Gaps = 65/329 (19%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENG---------ITYDRYTYCTRLSAYADASDHEG 66
YN ++ + K G E + M+E G I DR RL S G
Sbjct: 414 YNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDE--ACSIFLG 471
Query: 67 ID-KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YN 124
+D K+ T P D V + ++ +G G+ G ++ A + +K + G N+ Y
Sbjct: 472 LDHKVCT-----P----DSVTFCSLIDGLGRHGKVNDAYMLYEKMLDS--GQTPNAVVYT 520
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVK----VLNN------------------------ 155
++ + K G+K+D +I+ E+ + +LNN
Sbjct: 521 SLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQ 580
Query: 156 -------GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
Y +I L+K + K+F E + Q L DTR N +ID +C++G + KA
Sbjct: 581 GLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKA 640
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268
L+ K KG + V ++ + G + ++ +A ++ + L +V +
Sbjct: 641 YQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDL-----NVVVYS 695
Query: 269 ACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +D F G I A +E L KG P
Sbjct: 696 SLIDGFGKVGRIDEAYLILEELMQKGLTP 724
>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 126/308 (40%), Gaps = 51/308 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++ G TV YN++L+++ K G + + S++ EMEEN D TY ++AY A
Sbjct: 306 ELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAG 365
Query: 63 ---DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ G+ +++T PN + Y TV + YGK G D+AL + +E G
Sbjct: 366 FSKEAAGVIEMMTKKGVMPNA----ITYTTVIDAYGKAGKEDEALKLFYSMKEA--GCVP 419
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIF 177
N+ YN +L+L GK + ++++++ K N N + +L ++ ++F
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVF 479
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E +S D N LI Y R G + V+ K+ G
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCG------SEVDASKMYGE----------------- 516
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
T + V + A L+ +GD EN I + KGF P
Sbjct: 517 -----------------MTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKP 559
Query: 298 TDLQDKLL 305
T+ L+
Sbjct: 560 TETSYSLM 567
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V++NSML ++ + +++ + ++ + E+G++ D TY + + Y + ++IL
Sbjct: 632 VIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKT 691
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNSAYNVILTLY-- 130
+E + D V Y TV G+ + GL+ +A+ ML + +E I+ YN ++ Y
Sbjct: 692 LEKS-QLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFT--YNTFVSGYTA 748
Query: 131 -GKYGKKDDVL 140
G + + +DV+
Sbjct: 749 MGMFAEIEDVI 759
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 111/255 (43%), Gaps = 14/255 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G YN++L + G++ ++++ +M+ G +Y L YA
Sbjct: 516 EMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 575
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL---DKALAMLKKSEEQIKGAKV 119
++ GI++I ++ + + W++ T+ K L ++A + KK G K
Sbjct: 576 NYLGIERIENRIK-EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKK-----HGYKP 629
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ +N +L+++ + D I E + + + Y +++ ++ + AE+I
Sbjct: 630 DMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEIL 689
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ E L D N +I +CR GL+++A +++ +G + ++ +GY
Sbjct: 690 KTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAM 749
Query: 238 ---SQIHKAVEAMKK 249
++I +E M K
Sbjct: 750 GMFAEIEDVIECMAK 764
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 120/302 (39%), Gaps = 16/302 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + +V YN ++ Y + G ++ ++ M + G+ + TY T + AY
Sbjct: 339 LKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGK 398
Query: 61 AS-DHEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + E + +M EA PN Y V + GK ++ + ML + + G
Sbjct: 399 AGKEDEALKLFYSMKEAGCVPNTC----TYNAVLSLLGKKSRSNEMIKML--CDMKSNGC 452
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N A +N +L L G G V R++ E+ + + + +IS+ + A K
Sbjct: 453 SPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASK 512
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
++ E N L++ R G EN+++ K KG + S+ + Y
Sbjct: 513 MYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYA 572
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + +E ++ + Q W L A FK + G+E L G+
Sbjct: 573 KGGN-YLGIERIENRIKEGQIFPSWMLLRTLLLA---NFKCRA-LAGSERAFTLFKKHGY 627
Query: 296 IP 297
P
Sbjct: 628 KP 629
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK-DDVL 140
LD Y T+ + Y + G +KA+ + ++ +E + + YNVIL ++GK G+ +L
Sbjct: 208 LDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVT-YNVILDVFGKMGRSWRKIL 266
Query: 141 RIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199
+ E+ K +K V+S+ + L A++ F E +S T N L+ V+
Sbjct: 267 GVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVF 326
Query: 200 CRNGLLEKA 208
+ G+ +A
Sbjct: 327 GKAGVYTEA 335
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 18/259 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M G VYN +L +G E+ ++L EM+ + + D TY T L A
Sbjct: 173 FKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCK 232
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A E K+ M A PNV + ++T+ +G + G L+KAL + E G
Sbjct: 233 ARRVEEGCKLFEAMRAAGYVPNV----ITFSTLIHGLCRTGELEKALEVFGSMLEA--GC 286
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN----GYRNVISSLLKLDDLES 172
K N Y TL + + V++ EL++K + Y ++I+ K ++
Sbjct: 287 KPNKYTYT---TLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDE 343
Query: 173 AEKIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
AEK++ E A T + N LID +C+ G L +A LV KG ++ L
Sbjct: 344 AEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILI 403
Query: 232 TGYRQNSQIHKAVEAMKKV 250
G + +++ +A+E K++
Sbjct: 404 AGLSRATKLDEALEVYKQM 422
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 112/287 (39%), Gaps = 40/287 (13%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MRD +A Y+S++K K E+ ++ EM G D + + + +A +++
Sbjct: 1 MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA------ 117
E ++ M + D V Y + +G K+G LD++L +L SE ++G
Sbjct: 61 MEKAREVYQHM-VESGYKPDNVSYHILIHGLAKIGKLDESLKIL--SEMVMRGQTPSMQA 117
Query: 118 ------------KVNSA-------------------YNVILTLYGKYGKKDDVLRIWELY 146
+V+ A Y +IL L KD R ++
Sbjct: 118 YSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMP 177
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
K + Y ++ L LE A +F E +S + D N L+D C+ +E
Sbjct: 178 KHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVE 237
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
+ L + G +V ++ L G + ++ KA+E +L A
Sbjct: 238 EGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEA 284
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR G + +++++ +TG EK + M E G ++YTY T +S
Sbjct: 243 FEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCR 302
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A ++ M + D V Y ++ GY K G +D+A + + E GA +
Sbjct: 303 AEKVIQARELFEKM-TQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYR---EMSGGAGLQ 358
Query: 121 S---AYNVILTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+N ++ + GK G+ +++ + E+ K + + YR +I+ L + L+ A
Sbjct: 359 PTIVTFNTLIDGFCKLGKLGRANEL--VAEMGTKGLAADSCTYRILIAGLSRATKLDEAL 416
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+++++ + D + C+ G +++A
Sbjct: 417 EVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 450
>gi|307136024|gb|ADN33878.1| DNA-binding protein [Cucumis melo subsp. melo]
Length = 470
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 7/213 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DL T N +L LY +T + +K+ ++ ME+ + +TY + A ++
Sbjct: 254 KMKDLEFPITAFACNQLLLLYKRT-DKKKIADVLLLMEKENVKPSPFTYKILIDAKGLSN 312
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKGAKVNS 121
D G+++++ M+A+ + L + Y GL DKA A LK++EE KG++
Sbjct: 313 DISGMEQVVDTMKAE-GIKLGVGTLLLLAKHYVSAGLKDKAKATLKETEEINSKGSRRPC 371
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+ +L LYG+ +D+V R+WE+ + V I + KL +++ AEKIF+
Sbjct: 372 RF--LLPLYGELQMEDEVRRLWEICESNPHV--EECMAAIVAWGKLKNVQEAEKIFDRVV 427
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
TR + +++VY + +L K + LVN
Sbjct: 428 KTGKKLSTRHYSTMMNVYRDSKMLTKGKELVNQ 460
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 122/256 (47%), Gaps = 6/256 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN M+ K G F++ + H M++N D YTY T + + + +G ++ M
Sbjct: 233 YNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM- 291
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
A+ V+ D V+Y T+ NGY + G +++ L + K E++ G + +YN+++ + K
Sbjct: 292 AENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKE--GCRTVVSYNILIRGLFENAK 349
Query: 136 KDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
D+ + IWEL +K + Y ++ L K L A I EE E+ DT +
Sbjct: 350 VDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSS 409
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA-- 252
+I+ CR G L++ +++ G + + + G+ + S++ A+ +++
Sbjct: 410 MINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKG 469
Query: 253 AYQTLVKWKPSVESLA 268
+ T+V + + L+
Sbjct: 470 CFPTVVTYNTLINGLS 485
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 9/242 (3%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
+GL+ YN ++K+ + F+K L++ M G + D ++Y T +++ A
Sbjct: 118 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSD 177
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN---SAY 123
K+ M + V D Y + +G+ K G + A + E +KG V +Y
Sbjct: 178 ALKLFDEM-PERGVTPDVACYNILIDGFFKKGDILNASEIW---ERLLKGPSVYPNIPSY 233
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWES 182
NV++ K GK D+ IW KK + + Y +I L +L+ A ++++E
Sbjct: 234 NVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAE 293
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D + N +++ Y R G +E+ L + +G V S+ L G +N+++ +
Sbjct: 294 NGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDE 352
Query: 243 AV 244
A+
Sbjct: 353 AI 354
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 12/248 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGI-TYDRYTYCTRLSAYAD 60
++M + G++ VVYN+ML Y + G E+ L ME+ G T Y R
Sbjct: 289 KEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR-----G 343
Query: 61 ASDHEGIDKILTMMEADP--NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
++ +D+ +++ E P + D + Y + +G K G L+KAL++L+++E +G
Sbjct: 344 LFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENG-RGDL 402
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
AY+ ++ + G+ D+V + ++ K K VI+ ++ LE A + F
Sbjct: 403 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFF 462
Query: 178 EEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
S+ C+ T + N LI+ + +A LV KG + ++ ++ L G Q
Sbjct: 463 GNMVSKG-CFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQ 521
Query: 237 NSQIHKAV 244
++ A+
Sbjct: 522 GKKLDMAL 529
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/350 (18%), Positives = 127/350 (36%), Gaps = 42/350 (12%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + Y +++ K G L EM E G+T D Y + + D
Sbjct: 154 GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNA 213
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS------ 121
+I + P+V + Y + NG K G D++ + + ++ +G + +
Sbjct: 214 SEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIH 273
Query: 122 ----------------------------AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL 153
YN +L Y + G+ ++ L +W++ +K
Sbjct: 274 GLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRT 333
Query: 154 NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
Y +I L + ++ A I+E + C D+ L+ C+NG L KA +++
Sbjct: 334 VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE 393
Query: 214 HEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273
+ ++ ++ + G + ++ + + ++ T KP+ A ++
Sbjct: 394 EAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQM-----TKHGCKPNPYVCNAVING 448
Query: 274 FKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYG 323
F + A F + KG PT + + + NG S E E Y
Sbjct: 449 FVRASKLEDALRFFGNMVSKGCFPTVVT---YNTLINGLSKAERFSEAYA 495
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 12/269 (4%)
Query: 1 MQKMRDL-GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
Q+M ++ G YNS+L ++ +++ +S E G++ + TY +
Sbjct: 76 FQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISC 135
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ ++L M + D Y T+ N K G + AL + + E+ V
Sbjct: 136 RKKQFDKAKELLNWMWGQ-GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 194
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIF 177
+ YN+++ + K G + IWE K V N Y +I+ L K + + +I+
Sbjct: 195 -ACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIW 253
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ D + LI C +G L+ A + G V + + GY +
Sbjct: 254 HRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRA 313
Query: 238 SQIHKAVEAMK-------KVLAAYQTLVK 259
+I + +E K + + +Y L++
Sbjct: 314 GRIEECLELWKVMEKEGCRTVVSYNILIR 342
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 122/271 (45%), Gaps = 44/271 (16%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ +NS+L + + G +E +L EM I D ++Y T L A + +IL
Sbjct: 340 ITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQ 399
Query: 74 MEAD---PNVALDWVIYATVGNGYGKVGLLDKALAM------------------------ 106
M A PNV V Y+TV +G+ K G D+AL +
Sbjct: 400 MPAKRIMPNV----VSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYT 455
Query: 107 -LKKSEEQIK--------GAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN- 155
+ +SEE + G K + YN +L YGK GK D+V +++ K+ VL N
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKRE-HVLPNL 514
Query: 156 -GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
Y +I K + A ++F E++S L D + + LID C+NGL+ A +L++
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+G +V ++ + + +++ + ++ +
Sbjct: 575 MTKEGISPNVVTYNSIIDAFGRSATMERSAD 605
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 36/211 (17%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR L +A V YN++L +Y K G E+ ++ EM GI D TY L Y
Sbjct: 434 EMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQG 493
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
++ + K+ M+ + +V + + Y+T+ +GY K GL +A+ + ++
Sbjct: 494 KYDEVKKVFAEMKRE-HVLPNLLTYSTLIDGYSKGGLYKEAMEVFRE------------- 539
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ G + DV+ Y +I +L K + SA + +E
Sbjct: 540 -------FKSAGLRADVVL---------------YSALIDALCKNGLVGSAVSLIDEMTK 577
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ + + N +ID + R+ +E++ + N
Sbjct: 578 EGISPNVVTYNSIIDAFGRSATMERSADYSN 608
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M +G+ + V YN++L Y K G ++++ + EM+ + + TY T + Y+
Sbjct: 467 LREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSK 526
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKV 119
++ ++ ++ + D V+Y+ + + K GL+ A++++ + ++E I V
Sbjct: 527 GGLYKEAMEVFREFKS-AGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVV 585
Query: 120 NSAYNVILTLYGK 132
YN I+ +G+
Sbjct: 586 T--YNSIIDAFGR 596
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 106/269 (39%), Gaps = 19/269 (7%)
Query: 26 TGNFEKLDSLMHEMEENGITYDRYTYCTR-LSAYADASDHEGIDKILTMMEADPNVA--L 82
+G+ E SLM E D TY R L + G + E N L
Sbjct: 176 SGDDEMFHSLMLSFESKLCGSDDCTYIIRELGNRGECDKAVGFYEFAVKRERRKNEQGKL 235
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--AYNVILTLYGKYGKKDDVL 140
+ +T+G YGKV + + E G N+ A++ +++ YG+ G ++ +
Sbjct: 236 ASAMISTLGR-YGKVTIAKRIF------ETAFSGGYGNTVYAFSALISAYGRSGLHEEAI 288
Query: 141 RIWELYKK-AVKVLNNGYRNVISSLLKLD-DLESAEKIFEEWESQALCYDTRIPNFLIDV 198
++ K+ ++ Y VI + K + + K F+E + + D N L+ V
Sbjct: 289 SVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAV 348
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV 258
R GL E A NL + + E V S+ L + Q+ A E + ++ A
Sbjct: 349 CSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAK----- 403
Query: 259 KWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ P+V S + +D F G A N
Sbjct: 404 RIMPNVVSYSTVIDGFAKAGRFDEALNLF 432
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 129/327 (39%), Gaps = 44/327 (13%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T +++++ Y ++G E+ S+ + M+E G+ + TY +A DA G+
Sbjct: 263 GYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTY----NAVIDACGKGGM 318
Query: 68 D-----KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ K M+ + V D + + ++ + GL + A + + + V S
Sbjct: 319 EFKQVAKFFDEMQRN-CVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFS- 376
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEW 180
YN +L K G+ D I A +++ N Y VI K + A +F E
Sbjct: 377 YNTLLDAICKGGQMDLAFEILA-QMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM 435
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS-- 238
+ D N L+ +Y + G E+A +++ G + V ++ L GY +
Sbjct: 436 RYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKY 495
Query: 239 -QIHKAVEAMKKV-----LAAYQTLVK-------WKPSVESL---------------AAC 270
++ K MK+ L Y TL+ +K ++E +A
Sbjct: 496 DEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSAL 555
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIP 297
+D G +G A + I+ + +G P
Sbjct: 556 IDALCKNGLVGSAVSLIDEMTKEGISP 582
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 128/275 (46%), Gaps = 9/275 (3%)
Query: 25 KTGNFEKLDSLMHEMEENGIT-YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD 83
+ G EK LM EM GI + +TY T L+AY D +G+D+IL +ME + V
Sbjct: 228 RRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKE-QVVFS 286
Query: 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW 143
Y+ + Y G +++A + ++ E+ V Y+ +++ + G ++
Sbjct: 287 VATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDV-YVYSSMISWSRRLGNMKRAFALF 345
Query: 144 -ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
E+ ++ + + Y +I + K +E+AE + E +S+ + + I N +D YCR
Sbjct: 346 DEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRR 405
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
G +++A L + KG V ++ LA G ++H+ EA K + KP
Sbjct: 406 GKMDEALRLQAIMEKKGINADVFTYNILANGL---CKLHRYDEA--KCILNSMVEKGVKP 460
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+V + ++ + EG++ AE + KG +P
Sbjct: 461 NVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVP 495
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 3/212 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR+ + VY+SM+ + GN ++ +L EM + I + +TY +
Sbjct: 310 FEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCK 369
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E + +L M++ V L+ VI+ T +GY + G +D+AL + E++ A V
Sbjct: 370 AGQMEAAEILLLEMQSK-GVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVF 428
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN++ K + D+ I + +K VK + I K +L AE++F +
Sbjct: 429 T-YNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRD 487
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
E + + N LID YC+ +++A +
Sbjct: 488 MEKKGEVPNIITYNTLIDAYCKKEKVKQAHKI 519
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 117/279 (41%), Gaps = 37/279 (13%)
Query: 1 MQKMRDLGLARTTV-VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
M +M G+ + V YN++L Y + + +D ++ ME+ + + TY + Y+
Sbjct: 239 MDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYS 298
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS--------- 110
+ D E +KI M + N+ +D +Y+++ + ++G + +A A+ +
Sbjct: 299 SSGDIEEAEKIFEEMR-EKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNA 357
Query: 111 ------------------------EEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIWEL 145
E Q KG +N +N + Y + GK D+ LR+ +
Sbjct: 358 HTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAI 417
Query: 146 Y-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
KK + Y + + L KL + A+ I + + + I++YC+ G
Sbjct: 418 MEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGN 477
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
L +AE L + KG ++ ++ L Y + ++ +A
Sbjct: 478 LAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQA 516
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M + G+ V + +++Y K GN + + L +ME+ G + TY T + AY
Sbjct: 450 LNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCK 509
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ KI + M + + D Y+++ +G VG +D+AL + +E ++KG N
Sbjct: 510 KEKVKQAHKIKSEM-INKGLLPDLYTYSSLIHGECIVGRVDEALKLF--NEMRLKGITRN 566
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE 144
A Y +++ K G+ D+ ++++
Sbjct: 567 VATYTSMISGLSKEGRADEAFKLYD 591
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 33/328 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M G + YN+++ K G +E+ + EM +G++ D TY + L
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +K+ + M + +V D V ++++ + + + G LDKAL M S ++ N
Sbjct: 353 KGDVVETEKVFSDMRSR-DVVPDLVCFSSMMSLFTRSGNLDKAL-MYFNSVKEAGLIPDN 410
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ Y + G + + E+ ++ + Y ++ L K L A+K+F E
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+AL D+ LID +C+ G L+ A L K K + V ++ L G+ +
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 240 IHKAVE-----AMKKVLA---AYQTLVK--------------W--------KPSVESLAA 269
I A E K++L +Y LV W KP+V +
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNS 590
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + G+ E+F+E + +GF+P
Sbjct: 591 MIKGYCRSGNASDGESFLEKMISEGFVP 618
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 6/295 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+++ GL V+Y +++ Y + G +L +EM + G D TY T L
Sbjct: 401 VKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKM 460
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
DK+ M + + D + +G+ K+G L A+ + +K +E+ V Y
Sbjct: 461 LGEADKLFNEM-TERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDV-VTY 518
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N +L +GK G D IW ++ K + Y ++++L L A ++++E S
Sbjct: 519 NTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMIS 578
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + I N +I YCR+G E+ + +G S+ L G+ + + K
Sbjct: 579 KNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSK 638
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A +KK+ LV P V + + L F + + AE + + ++G P
Sbjct: 639 AFGLVKKMEEEQGGLV---PDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNP 690
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q++ G+ N M+ K G EK+ + + +++E G+ D TY T +SAY+
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYA--TVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E + +M A P +Y TV NG K G ++A K+ ++ + +
Sbjct: 284 GLME---EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA----KEVFAEMLRSGL 336
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYK--KAVKVLNN--GYRNVISSLLKLDDLESAEK 175
+ +L + KK DV+ +++ ++ V+ + + +++S + +L+ A
Sbjct: 337 SPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 396
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
F + L D I LI YCR G++ A NL N +G + V ++ + G
Sbjct: 397 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLC 456
Query: 236 QNSQIHKA 243
+ + +A
Sbjct: 457 KRKMLGEA 464
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 139/305 (45%), Gaps = 8/305 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G A V Y++++ Y G +K+ L+ EM+ G+ + YTY + + +
Sbjct: 1 MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ +++L M + + D V+Y T+ +G+ K+G + A + + E+Q + AY
Sbjct: 61 VDDAERVLREM-INQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQ-RIVPDFIAY 118
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
++ + GK + +++ +++ + V+ Y +I K ++E A + +
Sbjct: 119 TAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ 178
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
L + L D C+ G ++ A L++ KG ++++ ++ L G ++ I +
Sbjct: 179 SGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQ 238
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD 302
AV+ M+++ A P + +D + G++ A + + D+G PT +
Sbjct: 239 AVKLMEEMEVA-----GMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITF 293
Query: 303 KLLDN 307
+L N
Sbjct: 294 NVLMN 298
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 3/235 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ TVVY +++ + K GN + L EME+ I D Y +
Sbjct: 68 LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
DK+ M + V D V Y T+ +GY K G ++KA ++ + + V
Sbjct: 128 CGKMMEADKVFNKMFSR-GVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVV 186
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y + K G+ D + E+ K +++ Y ++++ L K ++ A K+ EE
Sbjct: 187 T-YTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEE 245
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
E + DT L+D YC+ G + KA L+ +G + V ++ L G+
Sbjct: 246 MEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGF 300
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 99/253 (39%), Gaps = 46/253 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M GL YNS++ K+GN + LM EME G+ D T+ T + AY
Sbjct: 208 LHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCK 267
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L M D + + + + NG+ G+L+ +L E KG N
Sbjct: 268 TGEMVKAHELLREM-LDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLE--KGIMPN 324
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNGYRNVISSLLKLDDL----- 170
+ YN +L +Y ++++ E+YK + V +N Y +I K ++
Sbjct: 325 TTTYN---SLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWF 381
Query: 171 ---ESAEK---------------------------IFEEWESQALCYDTRIPNFLIDVYC 200
E AEK +FEE + + D I N +D+
Sbjct: 382 LHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISY 441
Query: 201 RNGLLEKAENLVN 213
G +E A L +
Sbjct: 442 GEGNMETALELCD 454
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 14/296 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++D GL T NS++K + G E+L + M+ENGI YTY ++ ++
Sbjct: 175 ELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSM 234
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKVNS 121
E +K+ +M+ + D V Y + GY K G L KA+ + E + +K K+
Sbjct: 235 FIESAEKVFEVMDGG-KIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKIT- 292
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++ D L ++ E+ ++ +++ + Y VI L K A +FE
Sbjct: 293 -YMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 351
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + I LID Y +NG +E+A L K +G E ++ L G ++ ++
Sbjct: 352 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 411
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESL--AACLDYFKDEGDIGGAENFIELLNDKG 294
+E + ++ ++ A+ +D G I AEN E +++KG
Sbjct: 412 DDGME-------LFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKG 460
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 141/313 (45%), Gaps = 20/313 (6%)
Query: 1 MQKMRDLGLARTT---VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
M+K RD+ + + Y ++++ Y +F+ SL EMEE G+ ++Y +
Sbjct: 275 MEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGG 334
Query: 58 YAD---ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
+ + + + NVA IY + + Y K G +++A+ + ++ + +
Sbjct: 335 LCKQRKCMEAYAVFETMNQKGCRANVA----IYTALIDSYSKNGSMEEAMRLFERMKNE- 389
Query: 115 KGAKVNSA-YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLES 172
G + ++ Y+V++ K G+ DD + +++ + K V + Y ++I L K +E
Sbjct: 390 -GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIED 448
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
AE +FEE + D+ N +ID ++G +++A L + +G + V ++ L
Sbjct: 449 AENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILID 508
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
G + + +A++ K++ T P+V S A G + A ++ L
Sbjct: 509 GLFKEHKNEEAIKFWDKMIDKGIT-----PTVASFRALAIGLCLCGKVARACKILDDLAP 563
Query: 293 KGFIP-TDLQDKL 304
G IP T +D +
Sbjct: 564 MGIIPETAFEDMI 576
>gi|422294671|gb|EKU21971.1| hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana
CCMP526]
Length = 472
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 24/301 (7%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YNS+L Y G+ ++ M + G++ D YT+ T ++A+ + +K++
Sbjct: 24 ITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAEKMVAY 83
Query: 74 MEADPNVALDWVIYATVGNGYG-KVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYG 131
M+ + V D V Y+ + GY K G + KA +L++ G NS YN ++ Y
Sbjct: 84 MQ-EHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARD--GVAPNSYTYNYLIEGYV 140
Query: 132 KYGKKD---DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
K G+ D DVL A +N Y ++ + + D AEKI + + + + +
Sbjct: 141 KAGEMDWAEDVLERMRTVGLAPTSMN--YCVLMDAYTRRRDARGAEKILDRMKKEGVQAN 198
Query: 189 TRIPNFLIDVYCRNGLLEKAENL------VNHEKLKGR---EIHVKSWYYLATGYRQNSQ 239
++ L++ Y + G +E AE + V E+ G E +V ++ L Y +
Sbjct: 199 VQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGL 258
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
A + ++ AA W P+V + + + GD GAE ++ + G P
Sbjct: 259 AAGAEGVLTRMTAA-----GWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNV 313
Query: 300 L 300
L
Sbjct: 314 L 314
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 16/218 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G+A + YN +++ Y K G + + ++ M G+ YC + AY
Sbjct: 117 LERMARDGVAPNSYTYNYLIEGYVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTR 176
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA---LA-MLKKSEEQIKG 116
D G +KIL M+ + V + ++ T+ N Y K G ++ A LA ML +EE+ G
Sbjct: 177 RRDARGAEKILDRMKKE-GVQANVQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGG 235
Query: 117 AK-----VNSAYNVILTLYGKYG---KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD 168
+K V++ Y+ ++ +Y + G + VL A V+ + ++++ +
Sbjct: 236 SKDCEPNVHT-YSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVIT--FTTLMTAYSRAG 292
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
D E AE + + E+ + + N L+ R GL E
Sbjct: 293 DPEGAELVLKRMEAAGVSPNVLTYNTLLSATSRMGLRE 330
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 21/268 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M GL+ T +N+++ + + ++ M+E+G+ D TY L YA
Sbjct: 46 LKRMVQAGLSPDTYTFNTLIAAFVARREVRAAEKMVAYMQEHGVLADVVTYSQLLQGYAT 105
Query: 61 ASDHEG-IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
G +++L M D VA + Y + GY K G +D A +L++ + A
Sbjct: 106 KEGDMGKAEEVLERMARD-GVAPNSYTYNYLIEGYVKAGEMDWAEDVLERM-RTVGLAPT 163
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIF- 177
+ Y V++ Y + +I + KK V+ + ++++ K D+E AE +
Sbjct: 164 SMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFTTLMNAYAKRGDVEGAEGVLA 223
Query: 178 -------EEWESQALCYDTRIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225
EE C PN L++VY R GL AE ++ G +V
Sbjct: 224 RMLAVAEEEGGGSKDCE----PNVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVI 279
Query: 226 SWYYLATGYRQNSQIHKAVEAMKKVLAA 253
++ L T Y + A +K++ AA
Sbjct: 280 TFTTLMTAYSRAGDPEGAELVLKRMEAA 307
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 29/190 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G A + + +++ Y + G+ E + ++ ME G++ + TY T LSA +
Sbjct: 266 LTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVLTYNTLLSATSR 325
Query: 61 ASDHEGIDKILTMMEADPNVALDWV-IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
EG E + A + +Y T+ GK G L+K A
Sbjct: 326 MGLREG--------EVEERRAKRVLQVYDTMRRSAGKGGGLEK--------------APD 363
Query: 120 NSAYNVILTLYGKYGKK--DDVLR-IWELYKKAVKVLNNG---YRNVISSLLKLDDLESA 173
+ Y V+LT ++ K+ +V + I E +++ V N Y++ I+ L + D E
Sbjct: 364 EATYTVLLTCLLRFPKRLTKEVYKLILEDWRRLVPTRNRSDRNYQSFITVLAAMGDWEEM 423
Query: 174 EKIFEEWESQ 183
+F E +++
Sbjct: 424 ATVFREAQAR 433
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 133/318 (41%), Gaps = 45/318 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++R+ G T YN++LK Y KTG+ + + ++ EME+ G+ D TY + AYA
Sbjct: 315 FEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAH 374
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L MEA NV + +Y+ + Y G K+ +LK + + G + +
Sbjct: 375 AGRWESARIVLKEMEAS-NVEPNSYVYSRILASYRDKGEWQKSFQVLK--DMKSNGVQPD 431
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YNV++ +GKY D + +E ++L+ G R
Sbjct: 432 RHFYNVMIDTFGKYNCLDHAMATFE------RMLSEGIRP-------------------- 465
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
DT N LI+ +C++G AE L + +G + ++ + + +
Sbjct: 466 --------DTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQR 517
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ + K+ + Q L+ P+ + +D + G A +E+L GF PT
Sbjct: 518 WEQVSLFLSKMQS--QGLL---PNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTS 572
Query: 300 LQDKLLDN--VQNGKSNL 315
L N Q G S L
Sbjct: 573 TMYNALINAYAQRGLSEL 590
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ Y+ ++ Y G +E ++ EME + + + Y Y L++Y D
Sbjct: 350 VSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRD 409
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKV 119
+ + ++L M+++ V D Y + + +GK LD A+A ++ E I+ V
Sbjct: 410 KGEWQKSFQVLKDMKSN-GVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTV 468
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+N ++ + K G+ + ++ E+ ++ Y +I+S+ + E
Sbjct: 469 T--WNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLS 526
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ +SQ L ++ L+DVY ++G A + K G + + L Y Q
Sbjct: 527 KMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRG 586
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289
AV A + + T PS+ +L + ++ F + D AE F L
Sbjct: 587 LSELAVNAFRLM-----TTEGLTPSLLALNSLINAFGE--DRRDAEAFAVL 630
>gi|387219093|gb|AFJ69255.1| hypothetical protein NGATSA_2006000, partial [Nannochloropsis
gaditana CCMP526]
Length = 479
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 24/301 (7%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YNS+L Y G+ ++ M + G++ D YT+ T ++A+ + +K++
Sbjct: 31 ITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAEKMVAY 90
Query: 74 MEADPNVALDWVIYATVGNGYG-KVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYG 131
M+ + V D V Y+ + GY K G + KA +L++ G NS YN ++ Y
Sbjct: 91 MQ-EHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARD--GVAPNSYTYNYLIEGYV 147
Query: 132 KYGKKD---DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
K G+ D DVL A +N Y ++ + + D AEKI + + + + +
Sbjct: 148 KAGEMDWAEDVLERMRTVGLAPTSMN--YCVLMDAYTRRRDARGAEKILDRMKKEGVQAN 205
Query: 189 TRIPNFLIDVYCRNGLLEKAENL------VNHEKLKGR---EIHVKSWYYLATGYRQNSQ 239
++ L++ Y + G +E AE + V E+ G E +V ++ L Y +
Sbjct: 206 VQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGL 265
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
A + ++ AA W P+V + + + GD GAE ++ + G P
Sbjct: 266 AAGAEGVLTRMTAA-----GWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNV 320
Query: 300 L 300
L
Sbjct: 321 L 321
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 16/218 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G+A + YN +++ Y K G + + ++ M G+ YC + AY
Sbjct: 124 LERMARDGVAPNSYTYNYLIEGYVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTR 183
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA---LA-MLKKSEEQIKG 116
D G +KIL M+ + V + ++ T+ N Y K G ++ A LA ML +EE+ G
Sbjct: 184 RRDARGAEKILDRMKKE-GVQANVQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGG 242
Query: 117 AK-----VNSAYNVILTLYGKYG---KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD 168
+K V++ Y+ ++ +Y + G + VL A V+ + ++++ +
Sbjct: 243 SKDCEPNVHT-YSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVIT--FTTLMTAYSRAG 299
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
D E AE + + E+ + + N L+ R GL E
Sbjct: 300 DPEGAELVLKRMEAAGVSPNVLTYNTLLSATSRMGLRE 337
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 21/268 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M GL+ T +N+++ + + ++ M+E+G+ D TY L YA
Sbjct: 53 LKRMVQAGLSPDTYTFNTLIAAFVARREVRAAEKMVAYMQEHGVLADVVTYSQLLQGYAT 112
Query: 61 ASDHEG-IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
G +++L M D VA + Y + GY K G +D A +L++ + A
Sbjct: 113 KEGDMGKAEEVLERMARD-GVAPNSYTYNYLIEGYVKAGEMDWAEDVLERM-RTVGLAPT 170
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIF- 177
+ Y V++ Y + +I + KK V+ + ++++ K D+E AE +
Sbjct: 171 SMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFTTLMNAYAKRGDVEGAEGVLA 230
Query: 178 -------EEWESQALCYDTRIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225
EE C PN L++VY R GL AE ++ G +V
Sbjct: 231 RMLAVAEEEGGGSKDCE----PNVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVI 286
Query: 226 SWYYLATGYRQNSQIHKAVEAMKKVLAA 253
++ L T Y + A +K++ AA
Sbjct: 287 TFTTLMTAYSRAGDPEGAELVLKRMEAA 314
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G A + + +++ Y + G+ E + ++ ME G++ + TY T LSA +
Sbjct: 273 LTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVLTYNTLLSATSR 332
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
EG + E L +Y T+ GK G L+K A
Sbjct: 333 MGLREG-----EVEERRAKRVLQ--VYDTMRRSAGKGGGLEK--------------APDE 371
Query: 121 SAYNVILTLYGKYGKK--DDVLR-IWELYKKAVKVLNNG---YRNVISSLLKLDDLESAE 174
+ Y V+LT ++ K+ +V + I E +++ V N Y++ I+ L + D E
Sbjct: 372 ATYTVLLTCLLRFPKRLTKEVYKLILEDWRRLVPTRNRSDRNYQSFITVLAAMGDWEEMA 431
Query: 175 KIFEEWESQ 183
+F E +++
Sbjct: 432 TVFREAQAR 440
>gi|414884017|tpg|DAA60031.1| TPA: hypothetical protein ZEAMMB73_016344 [Zea mays]
Length = 703
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 138/339 (40%), Gaps = 30/339 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++R+L L T N ML LY + + +D ++ ME+ I Y +TY + ++
Sbjct: 372 EIRELSLPLTISACNQMLLLYKRVSRNKVVD-ILTLMEKENIKYSIFTYKLMIDLKVRSN 430
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G++++L M+ + + ++ I V Y +KA ++ E +K + A
Sbjct: 431 DILGMEQVLNSMKEN-GLEPNFTIQTMVAKFYISGCFTEKAEEVINAMEVHVKANR--HA 487
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+L LY G+ DV R+W L + + I + KL +E AE+IF+
Sbjct: 488 VRSLLDLYAILGRPVDVERVWNL---CAEPKLEDFLAAIKAWSKLGHIERAEEIFDVLVK 544
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
++ N +++VY N LL+K++ + L G I +W + Y ++ K
Sbjct: 545 TFPKLTSKYFNAMLEVYAENKLLDKSKKFIERMCLDGCTIGPLTWDAVVKLYVNLGELSK 604
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD 302
A + V + P S L + ++GDI AE + + F L
Sbjct: 605 ADSFLMNVT---EDNPDRHPLFSSYVILLKAYAEKGDIHNAEKIFDRVKQTNFPARTLPY 661
Query: 303 KLL--------------------DNVQNGKSNLETLREL 321
LL D GKS +E L++L
Sbjct: 662 NLLLAAYASAQVTPYGFRERMKADKFSPGKSQIEQLKQL 700
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 10/291 (3%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DASDHEGI 67
++ V +NS++ + G ++ L HEM I D YT+ + A D +
Sbjct: 230 ISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAK 289
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ + MM+ V D V Y+++ +GY V ++KA + + ++ A +YN+++
Sbjct: 290 NMLAVMMKQ--GVIPDVVTYSSLMDGYCLVNEVNKAKHVFS-TMSRLGVAPHAHSYNIMI 346
Query: 128 TLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
GK D+ L ++ E+ K + Y ++I L KL + A ++ +E + +
Sbjct: 347 NGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIP 406
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D N LIDV C+N ++KA LV K +G + + ++ L G + ++ A +
Sbjct: 407 ADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDV 466
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +L ++ W ++ C EG AE + + + G IP
Sbjct: 467 FQDLLIKGYSVNAWTYNIMINGLC-----KEGLFNEAEVLLSKMENNGIIP 512
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 11/241 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DASDHEG 66
G+ T V +N ++ Y G S+ ++ + G T+ T ++ + E
Sbjct: 89 GITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEA 148
Query: 67 I---DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ D ++ + LD V Y T+ NG K+G AL MLKK E ++ V Y
Sbjct: 149 LHFHDHVIAL-----GFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDV-VMY 202
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N+I+ K D +++ E+ K + + ++I + L+ A +F E
Sbjct: 203 NIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVL 262
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + D + L+D C++G + +A+N++ +G V ++ L GY ++++K
Sbjct: 263 KNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNK 322
Query: 243 A 243
A
Sbjct: 323 A 323
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 21/188 (11%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+A TV YNS++ K G L+ EM NGI D TY + + +H I
Sbjct: 369 GIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVL--CKNHH-I 425
Query: 68 DKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYN 124
DK + +++ D + Y + +G K G L A + + + IKG VN+ YN
Sbjct: 426 DKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQ--DLLIKGYSVNAWTYN 483
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIF 177
+++ K G ++ + K+ NNG Y +I +L + D+ E AEK+
Sbjct: 484 IMINGLCKEGLFNEAEVLLS------KMENNGIIPDAVTYETIIRALFRKDENEKAEKLL 537
Query: 178 EEWESQAL 185
E + L
Sbjct: 538 REMIIRGL 545
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 13/255 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M G+A VV+ +++ + G+ L EM++ G+ DR T+ ++
Sbjct: 345 LEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCR 404
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + + D++L M D + +D V Y + +GY K G + +A + ++ G +V
Sbjct: 405 AGELKEADRVLQEM-VDKGLDVDVVTYTVLIDGYCKRGNMVEAF----RVHNEMVGRRVA 459
Query: 121 SAYNVILTLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
L K+ DV + E+ K +++ Y ++I+ L K +LE A +I
Sbjct: 460 PNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRI 519
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E E+ D LID C++G ++A N++ KG + + ++ L G+
Sbjct: 520 MTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCM 579
Query: 237 NSQIHKAVEAMKKVL 251
+ + VE KK+L
Sbjct: 580 SGR----VEGGKKLL 590
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 13/224 (5%)
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGK 132
M + P+V V Y T+ +GY G L+ A+ +L E KG + N + Y ++ L
Sbjct: 281 MSSPPDV----VTYGTMVHGYCVRGELENAVKLL--DEMAAKGLESNATVYTSVIALLCN 334
Query: 133 YGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
G+ D LR+ E + V + + VIS DL +A ++FEE + + L D
Sbjct: 335 KGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVT 394
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
LI+ CR G L++A+ ++ KG ++ V ++ L GY + + +A +++
Sbjct: 395 HTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMV 454
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ P+V + A D +GD+ A + + +KG
Sbjct: 455 GR-----RVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGL 493
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 14/296 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++D GL T NS++K + G E+L + M+ENGI YTY ++ ++
Sbjct: 173 ELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSM 232
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKVNS 121
E +K+ +M+ + D V Y + GY K G L KA+ + E + +K K+
Sbjct: 233 FIESAEKVFEVMDGG-KIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKIT- 290
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++ D L ++ E+ ++ +++ + Y VI L K A +FE
Sbjct: 291 -YMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETM 349
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + I LID Y +NG +E+A L K +G E ++ L G ++ ++
Sbjct: 350 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRL 409
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESL--AACLDYFKDEGDIGGAENFIELLNDKG 294
+E + ++ ++ A+ +D G I AEN E +++KG
Sbjct: 410 DDGME-------LFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKG 458
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 141/313 (45%), Gaps = 20/313 (6%)
Query: 1 MQKMRDLGLARTT---VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
M+K RD+ + + Y ++++ Y +F+ SL EMEE G+ ++Y +
Sbjct: 273 MEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGG 332
Query: 58 YAD---ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
+ + + + NVA IY + + Y K G +++A+ + ++ + +
Sbjct: 333 LCKQRKCMEAYAVFETMNQKGCRANVA----IYTALIDSYSKNGSMEEAMRLFERMKNE- 387
Query: 115 KGAKVNSA-YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLES 172
G + ++ Y+V++ K G+ DD + +++ + K V + Y ++I L K +E
Sbjct: 388 -GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIED 446
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
AE +FEE + D+ N +ID ++G +++A L + +G + V ++ L
Sbjct: 447 AENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILID 506
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
G + + +A++ K++ T P+V S A G + A ++ L
Sbjct: 507 GLFKEHKNEEAIKFWDKMIDKGIT-----PTVASFRALAIGLCLCGKVARACKILDDLAP 561
Query: 293 KGFIP-TDLQDKL 304
G IP T +D +
Sbjct: 562 MGIIPETAFEDMI 574
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 136/310 (43%), Gaps = 8/310 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM++ G+ YN ++ + K G + L EM E G++ + TY T +
Sbjct: 257 EKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCRE 316
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+K++ M++D + + + Y T+ +G+ VG L KAL++ + + + +
Sbjct: 317 MKANEANKVMDQMKSD-GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL-V 374
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN++++ + K G ++ E+ ++ +K Y +I + ++D++E A ++
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPM 434
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E L D + LI +C G + +A L K E + + + GY +
Sbjct: 435 EELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSS 494
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
++A+ +++ + P+V S ++ E AE +E + D G P+D
Sbjct: 495 YRALRLFREMEEK-----ELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDS 549
Query: 301 QDKLLDNVQN 310
L+ +N
Sbjct: 550 ILNLISRAKN 559
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 99/213 (46%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M+ G+ + YN+++ + G K SL +++ G++ TY +S +
Sbjct: 326 MDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCK 385
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G K++ ME + + + Y + + + ++ ++KA+ + EE V+
Sbjct: 386 KGDTSGAGKVVKEME-ERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVH 444
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+V++ + G+ ++ R+++L K ++ Y ++ K A ++F E
Sbjct: 445 T-YSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFRE 503
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
E + L + ++I+V C+ ++AE LV
Sbjct: 504 MEEKELPPNVASYRYMIEVLCKERKSKEAEGLV 536
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 40/250 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++R+ G + V+Y +++ K G EK L EM + G+
Sbjct: 188 ELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGL------------------ 229
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
VA +W Y + +G K G+ + M +K +E G N
Sbjct: 230 -----------------VANEWT-YTVLIHGLFKNGIKKQGFEMYEKMQED--GVFPNLY 269
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ + K G+ D +++ E+ ++ V Y +I L + A K+ ++
Sbjct: 270 TYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQM 329
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+S + + N LID +C G L KA +L K +G + ++ L +G+ +
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDT 389
Query: 241 HKAVEAMKKV 250
A + +K++
Sbjct: 390 SGAGKVVKEM 399
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 45/308 (14%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+ ++K + G EK L+ E+ E G + + Y T + + E + M
Sbjct: 166 FGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMG 225
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYG 134
VA +W Y + +G K G+ + M +K +E G N YN ++ + K G
Sbjct: 226 KFGLVANEWT-YTVLIHGLFKNGIKKQGFEMYEKMQED--GVFPNLYTYNCVMNQHCKDG 282
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ D +++ E+ ++ V Y +I L + A K+ ++ +S + + N
Sbjct: 283 RTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYN 342
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
LID +C G L KA +L K +G + ++ L +G
Sbjct: 343 TLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSG-------------------- 382
Query: 254 YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKS 313
F +GD GA ++ + ++G P+ + +L +
Sbjct: 383 --------------------FCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMD 422
Query: 314 NLETLREL 321
N+E +L
Sbjct: 423 NMEKAIQL 430
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 17/259 (6%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM +G+ VYN ++ K+G+ EK D+L+ EME + D +TY T +S Y
Sbjct: 189 KKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKK 248
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
H + ME + + D V Y ++ +G+ K G + +A+ + K +I+ A N
Sbjct: 249 GMHYEALSVQDRMERE-GIKPDIVTYNSLIHGFCKEGRMREAMRLFK----EIRDATPNH 303
Query: 122 A-YNVILTLYGKYGKKDDVLRIWE------LYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
Y ++ Y + D LR+ E LY V Y +++ L ++ + A
Sbjct: 304 VTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVT-----YNSILRKLCEIGRIRDAN 358
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+ E + + D N LI+ YC+ G ++ A + N G ++ ++ L G+
Sbjct: 359 KLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGF 418
Query: 235 RQNSQIHKAVEAMKKVLAA 253
+ ++ A E + +L A
Sbjct: 419 CKIREMDGAKELLLSMLDA 437
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 36/218 (16%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M GL T V YNS+L+ + G + L++EM E I D T T ++AY
Sbjct: 327 EEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKI 386
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D + K+ M + + LD Y + +G+ K+ +D A +L + +++
Sbjct: 387 GDMKSALKVKNRM-VEAGLKLDQFTYKALIHGFCKIREMDGAKELLL--------SMLDA 437
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
++ Y W L +GY N + E+ K+ +E+
Sbjct: 438 GFSPSYCTYS-----------W---------LVDGYCNQ-------QNEEAVLKLPDEFV 470
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ LC D + LI +C+ ++ A+ + + + KG
Sbjct: 471 RKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKG 508
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 44/282 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G+ + +NS+L + + G +E +L EM I D ++Y T L A
Sbjct: 329 EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGG 388
Query: 63 DHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAM------------- 106
+ +IL M PNV V Y+TV +G+ K G D+AL +
Sbjct: 389 QMDLAFEILAQMPVKRIMPNV----VSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444
Query: 107 ------------LKKSEEQIK--------GAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
+ +SEE + G K + YN +L YGK GK D+V +++
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504
Query: 146 YKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
K+ VL N Y +I K + A +IF E++S L D + + LID C+NG
Sbjct: 505 MKRE-HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNG 563
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
L+ A +L++ +G +V ++ + + +++ + ++ +
Sbjct: 564 LVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSAD 605
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M +G+ + V YN++L Y K G ++++ + EM+ + + TY T + Y+
Sbjct: 467 LREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSK 526
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKV 119
++ +I ++ + D V+Y+ + + K GL+ A++++ + ++E I V
Sbjct: 527 GGLYKEAMEIFREFKS-AGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVV 585
Query: 120 NSAYNVILTLYGKYGKKD 137
YN I+ +G+ D
Sbjct: 586 T--YNSIIDAFGRSATMD 601
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 131/328 (39%), Gaps = 46/328 (14%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T +++++ Y ++G E+ S+ + M+E G+ + TY +A DA G+
Sbjct: 263 GYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTY----NAVIDACGKGGM 318
Query: 68 D-----KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ K M+ + V D + + ++ + GL + A + + + V S
Sbjct: 319 EFKQVAKFFDEMQRN-GVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFS- 376
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNN--GYRNVISSLLKLDDLESAEKIFEE 179
YN +L K G+ D I L + VK ++ N Y VI K + A +F E
Sbjct: 377 YNTLLDAICKGGQMDLAFEI--LAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGE 434
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS- 238
+ D N L+ +Y + G E+A +++ G + V ++ L GY +
Sbjct: 435 MRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGK 494
Query: 239 --QIHKAVEAMKKV-----LAAYQTLVK-------WKPSVESL---------------AA 269
++ K MK+ L Y TL+ +K ++E +A
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIP 297
+D G +G A + I+ + +G P
Sbjct: 555 LIDALCKNGLVGSAVSLIDEMTKEGISP 582
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 105/269 (39%), Gaps = 19/269 (7%)
Query: 26 TGNFEKLDSLMHEMEENGITYDRYTYCTR-LSAYADASDHEGIDKILTMMEADPNVA--L 82
+G+ E SLM E D TY R L + G + E N L
Sbjct: 176 SGDDEMFHSLMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKL 235
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--AYNVILTLYGKYGKKDDVL 140
+ +T+G YGKV + + E G N+ A++ +++ YG+ G ++ +
Sbjct: 236 ASAMISTLGR-YGKVTIAKRIF------ETAFAGGYGNTVYAFSALISAYGRSGLHEEAI 288
Query: 141 RIWELYKK-AVKVLNNGYRNVISSLLKLD-DLESAEKIFEEWESQALCYDTRIPNFLIDV 198
++ K+ ++ Y VI + K + + K F+E + + D N L+ V
Sbjct: 289 SVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAV 348
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV 258
R GL E A NL + + E V S+ L + Q+ A E + A +
Sbjct: 349 CSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEIL-----AQMPVK 403
Query: 259 KWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ P+V S + +D F G A N
Sbjct: 404 RIMPNVVSYSTVIDGFAKAGRFDEALNLF 432
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 11/253 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G A V YN+++ + + G + + L+ M E G+ T+ T ++ A
Sbjct: 181 MRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGR 240
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
E K+ M A + D V Y T+ +GY K G L +ALA+ + ++ V +
Sbjct: 241 MEDARKMFDEM-AREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFT 299
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK---LDDLESAEKIFEEW 180
++I + + V + ++ ++ +++ + +I + LDD A K E
Sbjct: 300 SLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMREC 359
Query: 181 ESQ--ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
Q +CY N LI+ YC+ G +++A L++ + KG + V ++ + +GY +
Sbjct: 360 RIQPSVVCY-----NVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIG 414
Query: 239 QIHKAVEAMKKVL 251
A E +K+L
Sbjct: 415 DTDSAFELNRKML 427
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 115/246 (46%), Gaps = 11/246 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ V + S++ + GN E+ +L+ +M E G+ + +T+ +A D
Sbjct: 285 EMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTF----TALIDGF 340
Query: 63 DHEGI--DKILTMMEA-DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
G D +L M E + + V Y + NGY K+G +D+A ++ E + KG K
Sbjct: 341 CRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIH--EMEAKGMKP 398
Query: 120 NSA-YNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ Y+ IL+ Y K G D + ++ KK V Y ++I L + L A ++F
Sbjct: 399 DVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELF 458
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E+ L D LID +C+ G ++KA +L + KG V ++ L G ++
Sbjct: 459 EKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKS 518
Query: 238 SQIHKA 243
++ +A
Sbjct: 519 ARTKEA 524
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 143/323 (44%), Gaps = 13/323 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR+ G+ + V +N+++ K G E + EM G+T D +Y T +S Y A
Sbjct: 216 MREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGC 275
Query: 64 -HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
HE + M A V D V + ++ + + G L++A+A++ + E +G ++N
Sbjct: 276 LHEALAVFAEM--AQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRE--RGLRMNEF 331
Query: 122 AYNVILTLYGKYGKKDD-VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ ++ + + G DD +L + E+ + ++ Y +I+ KL ++ A ++ E
Sbjct: 332 TFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEM 391
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E++ + D + ++ YC+ G + A L KG ++ L G + ++
Sbjct: 392 EAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRL 451
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
A E +K+L + +P + +D EG++ A + + + KG +P +
Sbjct: 452 GDACELFEKMLQ-----LGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVV 506
Query: 301 Q-DKLLDNVQNGKSNLETLRELY 322
L+D + E R L+
Sbjct: 507 TYSVLIDGLSKSARTKEAQRLLF 529
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 122/292 (41%), Gaps = 10/292 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G A + + YN++L L + L+ M +G+ + YTY + A E
Sbjct: 115 GYAPSLLAYNAVL-LALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVNSAYNVI 126
++ A + V Y T+ + + G +D A ++ E ++ + V +N +
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVT--FNTV 231
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ K G+ +D +++ E+ ++ + Y ++S K L A +F E + +
Sbjct: 232 VNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV 291
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D LI CR G LE+A LV + +G ++ ++ L G+ +N + A+
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALL 351
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
AMK++ + +PSV ++ + G + A I + KG P
Sbjct: 352 AMKEMREC-----RIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKP 398
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 133/328 (40%), Gaps = 34/328 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++MR+ + + V YN ++ Y K G ++ L+HEME G+ D TY T LS Y
Sbjct: 353 MKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCK 412
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++ M V D + Y+++ G + L A + +K Q+
Sbjct: 413 IGDTDSAFELNRKM-LKKGVVPDAITYSSLIRGLCEERRLGDACELFEKM-LQLGLQPDE 470
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF-- 177
Y ++ + K G L + E+ KK V Y +I L K + A+++
Sbjct: 471 FTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFK 530
Query: 178 --------EEWESQALCYDTRIPNF-----LIDVYCRNGLLEKAEN-----LVNHEKLKG 219
+ + +AL + R F L+ + GL+ +A+ L H KL G
Sbjct: 531 LYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDG 590
Query: 220 REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279
+ L G+ + I KA+ K++L + P+ S + + +EG
Sbjct: 591 -----SVYSVLIHGHCRGGNIMKALSFHKQLLRC-----GFSPNSTSTISLVRGLFEEGM 640
Query: 280 IGGAENFI-ELLNDKGFIPTDLQDKLLD 306
A+N I ELLN + L+D
Sbjct: 641 TVEADNVIQELLNCCSLADAETSKALID 668
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 16/251 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + G A T V YNS++ + + ++ M +M G D TY + +
Sbjct: 132 VETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCK 191
Query: 61 ASD-HEGIDKI--LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ D G++ + +T P D V Y+TV +G K G L A+ + E++ A
Sbjct: 192 SRDVGRGLELLGEVTRRGFTP----DIVTYSTVIDGLCKAGRLRDAVDIF----EEMSCA 243
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELY---KKAVKVLNNGYRNVISSLLKLDDLESAE 174
YN ++ Y + G D+ +R+ K A V+ Y ++S+ K+ L+ A
Sbjct: 244 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVT--YTTLMSAFCKMGRLDDAY 301
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++F++ + L D L+D C G +E A L+ +G + ++ + GY
Sbjct: 302 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 361
Query: 235 RQNSQIHKAVE 245
+ +Q+ KA E
Sbjct: 362 CKANQVRKAEE 372
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 128/303 (42%), Gaps = 19/303 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++M G + Y +++ + K+ + + L+ E+ G T D TY T +
Sbjct: 167 MEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCK 226
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A I M P + Y ++ GY + G +D+A+ +L K + K A
Sbjct: 227 AGRLRDAVDIFEEMSCAPTA----ITYNSLIGGYCRAGDMDEAIRLLGKMVDD-KCAPDV 281
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK------VLNNGYRNVISSLLKLDDLESAE 174
Y +++ + K G+ DD +EL+++ V V+ + +++ L +E A
Sbjct: 282 VTYTTLMSAFCKMGRLDDA---YELFQQMVANKLSPDVVT--FTSLVDGLCGEGRMEDAL 336
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ EE + N ++D YC+ + KAE LV + +G + ++ L G
Sbjct: 337 ELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGC 396
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ + +A++ + ++ + SV A LD +G A F E + +G
Sbjct: 397 CRAGRTDQALQYLDQLNSEGG---PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRG 453
Query: 295 FIP 297
++P
Sbjct: 454 YVP 456
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 3/219 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M L+ V + S++ G E L+ E+ G YTY + Y
Sbjct: 304 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 363
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A+ ++++ + V + V Y + G + G D+AL L + + +
Sbjct: 364 ANQVRKAEELVADFRSRGFVP-NTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTS 422
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
A Y +IL + G+ DD ++ +E + ++ + V+ +L K + A ++ E
Sbjct: 423 VAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLE 482
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
E + ++ YCR G+++KA+ L + +L
Sbjct: 483 EMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 521
>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 18/227 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM LG+ VYN ++ K+G+ EK + L+ EMEE G+ D +TY T +S Y
Sbjct: 191 FKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLISVYCK 250
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
S H + ME VA D V Y ++ +G+ + G + +A + +K IKG +
Sbjct: 251 KSMHFEALSVQDRMERS-GVAPDIVTYNSLIHGFSREGRMREATRLFRK----IKGVVMA 305
Query: 120 -NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG---YRNVISSLLKLDDLESAEK 175
+ Y ++ Y + D+ LR+ E+ + + G Y +++ L + + A +
Sbjct: 306 NHVTYTTLIDGYCRMNDIDEALRLREVMES--RGFCPGVVTYNSILRKLCEDGRIREANR 363
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
+ E + + D N LI+ YC K E++V+ K+K + I
Sbjct: 364 LLTEMSVKKIEPDNITCNTLINAYC------KIEDMVSAVKVKKKMI 404
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 5/212 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G V YNS+L+ + G + + L+ EM I D T T ++AY D
Sbjct: 333 MESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIEPDNITCNTLINAYCKIED 392
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
K+ M + + LD Y + +G+ KV LD A L E KG SA
Sbjct: 393 MVSAVKVKKKM-IESGLKLDMYSYKALIHGFCKVLELDNAKEELFSMIE--KGLSPGYSA 449
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWE 181
Y+ ++ + K+D++ ++ E ++K + YR +I + KL+ ++ A+ +FE E
Sbjct: 450 YSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLIRRICKLEQVDYAKVLFESME 509
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ L D+ I + Y R G + A L +
Sbjct: 510 KKGLMGDSVIYTTMAYAYWRTGKVTDASALFD 541
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 36/235 (15%)
Query: 77 DPNV---ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
DP V W++ Y K G+++ ++A+ EQI + L
Sbjct: 128 DPEVLSHVFSWLMIF-----YAKSGMINDSIAVF----EQIMSCGLKPHLQACTVLLNSL 178
Query: 134 GKKDDVLRIWELYKKAVK--VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K+ +W+++KK VK V+ N Y ++ + K D E AEK+ E E + + D
Sbjct: 179 VKERLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDI 238
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N LI VYC+ + +A ++ + + G + ++ L G+ + ++ +A +K
Sbjct: 239 FTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREATRLFRK 298
Query: 250 V-------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ Y TL+ D + DI A E++ +GF P
Sbjct: 299 IKGVVMANHVTYTTLI-------------DGYCRMNDIDEALRLREVMESRGFCP 340
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 7/242 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYY-KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+ +M + G+ YN+++ +Y K+ +FE L S+ ME +G+ D TY + + ++
Sbjct: 226 LSEMEEKGVFPDIFTYNTLISVYCKKSMHFEAL-SVQDRMERSGVAPDIVTYNSLIHGFS 284
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ ++ V + V Y T+ +GY ++ +D+AL + + E + V
Sbjct: 285 REGRMREATRLFRKIKG--VVMANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFCPGV 342
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN IL + G+ + R+ E+ K ++ N +I++ K++D+ SA K+ +
Sbjct: 343 VT-YNSILRKLCEDGRIREANRLLTEMSVKKIEPDNITCNTLINAYCKIEDMVSAVKVKK 401
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-YRQN 237
+ L D LI +C+ L+ A+ + KG ++ +L G Y QN
Sbjct: 402 KMIESGLKLDMYSYKALIHGFCKVLELDNAKEELFSMIEKGLSPGYSAYSWLVDGFYNQN 461
Query: 238 SQ 239
Q
Sbjct: 462 KQ 463
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 121/293 (41%), Gaps = 32/293 (10%)
Query: 35 LMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGY 94
HE++ G+ D +Y + + A +++ MEA+ +V + Y T+ GY
Sbjct: 5 FFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYA-YNTMIMGY 63
Query: 95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN 154
G G + A +L++ E+ V S +N ILT GK K D+ L ++E+ KK + +
Sbjct: 64 GSAGRFEDAYKLLERLRERGCIPSVVS-FNSILTCLGKKRKVDEALSLFEVMKKDAEPNS 122
Query: 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
+ Y +I L +E A +I +E E +L + N ++D C+ LE+A +
Sbjct: 123 STYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFES 182
Query: 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA--------YQTLVK------- 259
+G ++ L G + Q+ +A +K+L A Y +L++
Sbjct: 183 ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGR 242
Query: 260 ---------------WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KP + L +D G++ E + GF+P
Sbjct: 243 KEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 295
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 133/304 (43%), Gaps = 20/304 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM D G VVY S+++ ++ G E + E+ G D T L+ Y D
Sbjct: 215 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD----LTLLNTYMD 270
Query: 61 ASDHEG-IDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
G ++K + E + D Y+ + +G K G + + ++Q G
Sbjct: 271 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQ--GF 328
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+++ AYN ++ + K GK I E + +K V+ Y ++ L K+D L+ A
Sbjct: 329 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 388
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+FEE +S+ + + + + LID + + G +++A ++ KG +V +W L
Sbjct: 389 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 448
Query: 236 QNSQIHKAVEAMKKVLAAYQTL--VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+ +I++A L +Q++ +K P+ + + ++ A F + + +
Sbjct: 449 KAEEINEA-------LVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ 501
Query: 294 GFIP 297
G +P
Sbjct: 502 GLVP 505
>gi|218200516|gb|EEC82943.1| hypothetical protein OsI_27919 [Oryza sativa Indica Group]
Length = 500
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 8/221 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KMR+L L + VYN ++ L+ G + + ++ +M+ + +T TY L A+
Sbjct: 174 RKMRELSLPISPYVYNRLIILHSSPGRQKTISKILAQMKGDRVTPHTSTYNILLKIKANE 233
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ +G+ ++ M+ +PN + Y + + L + ++ E + G
Sbjct: 234 HNIDGVARVFNDMKRAKVEPNE----ITYGILAIAHAVARLYTVSHTYVEAIENSMTGTN 289
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S ++L LYG +GK ++ W+L + + + I + K+ ++ AE+I+
Sbjct: 290 W-STLEILLILYGYHGKAKELKMTWDLMQGLPHIRPKSFILAIEAFGKVGSIDQAEEIWG 348
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
++ES T N ++ VYCR+GL++KA + + G
Sbjct: 349 KFESTRKPKLTEQFNSILSVYCRHGLVDKASAVFKEMRANG 389
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 139/303 (45%), Gaps = 17/303 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G A YN++L + K E L+ +M G D +Y T ++
Sbjct: 67 LEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCK 126
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +++ M PNV + Y T+ +G+ +VG LD A+ +++K E +G
Sbjct: 127 LDQVDEACRVMDKMIQRGCQPNV----ITYGTLVDGFCRVGDLDGAVELVRKMTE--RGY 180
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAE 174
+ N+ YN I+ K D L++++ +++ + Y ++ SL+K ++ A
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 240
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ E S+ + + L+ C+ G L++A L+ G ++ ++ + G+
Sbjct: 241 RLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 300
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ +I +A +++++ +P+V + LD F G A +E++ +KG
Sbjct: 301 CKLGRIDEAYHLLEEMVDG-----GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKG 355
Query: 295 FIP 297
++P
Sbjct: 356 YVP 358
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 135/306 (44%), Gaps = 23/306 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDS---LMHEMEENG-ITYDRYTYCTRLS 56
++KM + G + YN+++ + + KLDS L EMEE+G D +TY T +
Sbjct: 172 VRKMTERGYRPNAITYNNIM---HGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVD 228
Query: 57 AYADASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
+ + + +++ M + PNV V Y+++ +G K G LD+A A+L++
Sbjct: 229 SLVKSGKVDDACRLVEAMVSKGCSPNV----VTYSSLLHGLCKAGKLDEATALLQRMTRS 284
Query: 114 IKGAKVN-SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLE 171
G N YN I+ + K G+ D+ + E + + Y ++ + K E
Sbjct: 285 --GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 342
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A + E + + N L+D++C+ +E+A L++ KG +V S+ +
Sbjct: 343 DAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVI 402
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
G + +++H+ V ++++L+ P + + +D + A L+
Sbjct: 403 AGLCKATKVHEGVLLLEQMLSN-----NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQ 457
Query: 292 DKGFIP 297
+ G P
Sbjct: 458 ESGCTP 463
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 108/254 (42%), Gaps = 23/254 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M G + V Y+S+L K G ++ +L+ M +G + + TY T + +
Sbjct: 243 VEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCK 302
Query: 61 ASDHEGIDKILTMME------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
ID+ ++E PNV V Y + + + K G + A+ +++ E
Sbjct: 303 LGR---IDEAYHLLEEMVDGGCQPNV----VTYTVLLDAFCKCGKAEDAIGLVEVMVE-- 353
Query: 115 KGAKVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNN--GYRNVISSLLKLDD 169
KG N YN +L ++ K KD+V R +L ++ + N Y VI+ L K
Sbjct: 354 KGYVPNLFTYNSLLDMFCK---KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATK 410
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
+ + E+ S D N +ID C+ ++ A L N + G ++ ++
Sbjct: 411 VHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNS 470
Query: 230 LATGYRQNSQIHKA 243
L G ++ + +A
Sbjct: 471 LVHGLCKSRRFDQA 484
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 107/289 (37%), Gaps = 50/289 (17%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V +N+++ KT + L + ++E+G T + TY + + + + + +L
Sbjct: 431 VTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLRE 490
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M + D + Y TV +G K +V+ AY + L +
Sbjct: 491 MTRKQGCSPDIITYNTVIDGL-------------------CKSKRVDRAYKLFLQMLSDG 531
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE-----EWESQALCYD 188
DDV Y VISSL K ++ A + E ++ A+ Y
Sbjct: 532 LAPDDVT----------------YSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYG 575
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
T LID +C+ G L+KA ++ KG V ++ + ++ +A E ++
Sbjct: 576 T-----LIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLE 630
Query: 249 KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+L A P + L F D A + E++ G P
Sbjct: 631 TMLRA-----GLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEP 674
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 2/240 (0%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V+YN + + K G+ + HE++ +G+ D +Y + + A +++
Sbjct: 247 VLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQ 306
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
MEA+ +V + Y T+ GYG D A +L++ E+ V S +N ILT GK
Sbjct: 307 MEAERDVPCAYA-YNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVS-FNSILTCLGKK 364
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
K D+ L ++++ KK K + Y +I L + A KI +E E L + N
Sbjct: 365 RKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVN 424
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
++D C+ LE+A + +G + ++ L G + +I A +K+L A
Sbjct: 425 IMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDA 484
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 144/353 (40%), Gaps = 42/353 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM D G ++Y S+++ ++ G E + EM G D T L+ Y D
Sbjct: 478 FEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPD----LTLLNTYMD 533
Query: 61 ASDHEG-IDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
G ++K + E + D Y+ + +G K G + + + +Q G
Sbjct: 534 CVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQ--GF 591
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEK 175
+++ AYN ++ K GK D + E K K V Y +++ L K+D L+ A
Sbjct: 592 ALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYM 651
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+FEE +S+ + + + + LID + + G +++A ++ KG +V +W L
Sbjct: 652 LFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALV 711
Query: 236 QNSQIHKAV---EAMKKVLAAYQT-------------------LVKWK--------PSVE 265
+ +I +A+ ++MK++ + T V W+ P+V
Sbjct: 712 KTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVV 771
Query: 266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLDNVQNGKSNLET 317
+ + G+I A + E G IP + L++ + N +E
Sbjct: 772 TYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEA 824
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 106/277 (38%), Gaps = 52/277 (18%)
Query: 3 KMRD----LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
K+RD GL + N M+ K E+ + E G + TYC+ +
Sbjct: 406 KIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLI--- 462
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+G GK G +D A + +K + G
Sbjct: 463 ---------------------------------DGLGKKGKIDDAYRLFEKMLDA--GHD 487
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVK---VLNNGYRNVISSLLKLDDLESA 173
N Y ++ + +G+K+D +I+ E+ ++ + L N Y + + K ++E
Sbjct: 488 ANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCV---FKAGEVEKG 544
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
IFE+ +S D R + LI + G + N+ +G + +++ + G
Sbjct: 545 RAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDG 604
Query: 234 YRQNSQIHKAVEAMK--KVLAAYQTLVKWKPSVESLA 268
++ ++ KA E ++ KV + T+ + V+ LA
Sbjct: 605 LCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLA 641
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 136/326 (41%), Gaps = 16/326 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR GL ++++ + G ++ + E++ NG TY + L +
Sbjct: 274 LDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGK 333
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + IL ME D N D V Y + Y + G LD+ +A++ KG N
Sbjct: 334 AGIYTEALSILKEME-DNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTS--KGVMPN 390
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ YGK G++DD LR++ L K N Y +V++ L K E K+
Sbjct: 391 AITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLC 450
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY-RQN 237
E + + N ++ V G ++ K G E ++ L + Y R
Sbjct: 451 EMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCG 510
Query: 238 SQIHKAVEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
S++ A Y +VK + P V + A L+ GD AE+ I+ + KGF
Sbjct: 511 SEVDSA--------KMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGF 562
Query: 296 IPTDLQDKLLDNVQNGKSNLETLREL 321
P + LL + + N++ + ++
Sbjct: 563 KPNENSYSLLLHCYSKAGNVKGIEKV 588
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 41/330 (12%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+DLG A YNS+L + K E + ++ EM+ NG +R T+ T L+ ++
Sbjct: 417 MKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGK 476
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG------------------------- 98
H ++K+L M+ + D + T+ + Y + G
Sbjct: 477 HNYVNKVLREMK-NCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYN 535
Query: 99 LLDKALAM---LKKSEEQI-----KGAKVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKK 148
L ALA K +E I KG K N ++Y+++L Y K G + ++ E+Y
Sbjct: 536 ALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDG 595
Query: 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
V R ++ + K L E+ F++ + D + N ++ ++ RN + KA
Sbjct: 596 HVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKA 655
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268
+++ G + ++ ++ L Y + + KA E +K + + +P V S
Sbjct: 656 REMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGP-----EPDVVSYN 710
Query: 269 ACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ F +G + A + + KG PT
Sbjct: 711 TVIKGFCRKGLMQEAIGVLSEMTTKGIQPT 740
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 112/262 (42%), Gaps = 6/262 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D +V YN + Y + G ++ +++ M G+ + TY T + AY
Sbjct: 344 LKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGK 403
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + ++ ++M+ D A + Y +V GK + + +L E ++ G N
Sbjct: 404 AGREDDALRLFSLMK-DLGCAPNVYTYNSVLAMLGKKSRTEDVIKVL--CEMKLNGCAPN 460
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
A +N +L + + GK + V ++ E+ + + + +IS+ + + K++
Sbjct: 461 RATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYG 520
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E N L++ R G + AE+++ + KG + + S+ L Y +
Sbjct: 521 EMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAG 580
Query: 239 QIHKAVEAMKKVLAAYQTLVKW 260
+ K +E ++K + W
Sbjct: 581 NV-KGIEKVEKEIYDGHVFPSW 601
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++ G VV NSML ++ + F K ++H + E G+ + +TY + Y
Sbjct: 626 QLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREG 685
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ +++L ++ +P+V V Y TV G+ + GL+ +A+ +L SE KG +
Sbjct: 686 ECWKAEEVLKGIQNSGPEPDV----VSYNTVIKGFCRKGLMQEAIGVL--SEMTTKGIQP 739
Query: 120 N-SAYNVILTLYGK---YGKKDDVLRI 142
YN L+ Y + + ++V+R
Sbjct: 740 TIVTYNTFLSGYAGMELFDEANEVIRF 766
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ++L Y +TG +++ L +M+E G+ TY L Y D+IL +++
Sbjct: 218 YTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMG--RSWDRILELLD 275
Query: 76 --ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGK 132
+ LD +TV + G+ G+LD+A L +E + G K + YN +L ++GK
Sbjct: 276 EMRSKGLELDEFTCSTVISACGREGMLDEARKFL--AELKFNGYKPGTVTYNSMLQVFGK 333
Query: 133 YGKKDDVLRI 142
G + L I
Sbjct: 334 AGIYTEALSI 343
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 112/247 (45%), Gaps = 13/247 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G YN++L + G+++ +S++ +M G + +Y L Y+ A + +GI
Sbjct: 526 GFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGI 585
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLL---DKALAMLKKSEEQIKGAKVNSAYN 124
+K+ + D +V W++ T+ K L ++A L+K + +NS
Sbjct: 586 EKVEKEI-YDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINS--- 641
Query: 125 VILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+L+++ + + K ++L +++ ++ Y ++ ++ + AE++ + +
Sbjct: 642 -MLSMFARNKMFSKAREMLHF--IHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQ 698
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D N +I +CR GL+++A +++ KG + + ++ +GY
Sbjct: 699 NSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFD 758
Query: 242 KAVEAMK 248
+A E ++
Sbjct: 759 EANEVIR 765
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 9/204 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSL-----MHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
+ S+LK +GN+E+ L +H + + D + S H K+
Sbjct: 143 FPSLLKALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKL 202
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
++ + +LD Y T+ + Y + G +A+ + K +E I YNV+L +Y
Sbjct: 203 FDLIPVE-KYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKE-IGLDPTLVTYNVMLDVY 260
Query: 131 GKYGKK-DDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
GK G+ D +L + E+ K +++ VIS+ + L+ A K E +
Sbjct: 261 GKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPG 320
Query: 189 TRIPNFLIDVYCRNGLLEKAENLV 212
T N ++ V+ + G+ +A +++
Sbjct: 321 TVTYNSMLQVFGKAGIYTEALSIL 344
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ +++ G V YN+++K + + G ++ ++ EM GI TY T LS YA
Sbjct: 694 LKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAG 753
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112
+ ++++ M + N + Y + +GY K G ++A+ + K +E
Sbjct: 754 MELFDEANEVIRFM-IEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSKIKE 804
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 4/209 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ L V+YN + + K G + HEM+ +G+ D TY + +
Sbjct: 253 LDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCK 312
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A+ + ++ +E + V + Y T+ GYG G D+A +L++ ++ KG+ +
Sbjct: 313 ANRLDEAVELFEQLEQNRKVPCAYA-YNTMIMGYGSAGKFDEAYGLLER--QKAKGSIPS 369
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN ILT GK + ++ LRI+E K+ Y +I L + L +A +I ++
Sbjct: 370 VIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDD 429
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E L + N +ID C+ LE+A
Sbjct: 430 MERAGLFPNVLTVNIMIDRLCKAQKLEEA 458
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 8/211 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M++LG ++ ++++++ + G + SL+ EM+ N + D Y + +
Sbjct: 218 FHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGK 277
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + K M++ + D V Y ++ K LD+A+ + ++ E+ K
Sbjct: 278 AGKVDMSWKFFHEMKSH-GLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRK-VPCA 335
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
AYN ++ YG GK D+ + E K + + Y +++ L K +E A +IFEE
Sbjct: 336 YAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEE 395
Query: 180 WESQALCYDTRIP--NFLIDVYCRNGLLEKA 208
+ A+ +P N LID+ CR G L A
Sbjct: 396 MKRDAV---PNVPTYNILIDMLCREGKLNAA 423
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 5/245 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM D G +VY S+++ ++K G E + EM G + D T + A
Sbjct: 498 EKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKA 557
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E + + A + D Y+ + +G K GL ++ + +EQ G +++
Sbjct: 558 GETEKGRALFREINAHGFIP-DARSYSILIHGLVKAGLANETYELFYAMKEQ--GCVLDT 614
Query: 122 -AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN ++ + K GK + ++ E K K Y +VI L K+D L+ A +FEE
Sbjct: 615 HAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 674
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S + + + + LID + + G +++A ++ KG +V +W L + +
Sbjct: 675 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 734
Query: 240 IHKAV 244
I++A+
Sbjct: 735 INEAL 739
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 111/267 (41%), Gaps = 46/267 (17%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G T YN+++ + K+G K L+ EM+ G TY + + A
Sbjct: 605 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAK--- 661
Query: 64 HEGIDKI----LTMMEADPN-VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ----- 113
ID++ + EA N + L+ V+Y+++ +G+GKVG +D+A ++++ ++
Sbjct: 662 ---IDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 718
Query: 114 -----------IKGAKVNSA------------------YNVILTLYGKYGKKDDVLRIW- 143
+K ++N A Y++++ + K + W
Sbjct: 719 VYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQ 778
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
E+ K +K Y +IS L K ++ A +F +++ D+ N +I+
Sbjct: 779 EMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSAN 838
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYL 230
A L +LKG IH K+ L
Sbjct: 839 KAMDAYALFEETRLKGCNIHTKTCVVL 865
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 112/264 (42%), Gaps = 21/264 (7%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ++ + + G + +ME G+ + T + A E I M+
Sbjct: 407 YNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMD 466
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE--QIKGAKVNSAYNVILTLYGKY 133
D + V ++++ +G GK G +D A ++ +K + + GA V Y ++ + K
Sbjct: 467 -DKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIV---YTSLIRSFFKC 522
Query: 134 GKKDDVLRIWELYKKAVKV-------LNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
G+K+D +I YK+ V L N Y + + K + E +F E +
Sbjct: 523 GRKEDGHKI---YKEMVHTGCSPDLTLINTYMDCV---FKAGETEKGRALFREINAHGFI 576
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D R + LI + GL + L K +G + ++ + G+ ++ +++KA +
Sbjct: 577 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 636
Query: 247 MK--KVLAAYQTLVKWKPSVESLA 268
++ KV T+V + ++ LA
Sbjct: 637 LEEMKVKGHPPTVVTYGSVIDGLA 660
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 8/267 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEM-EENGITYDRYTYCTRLSAYADA 61
+M + G+AR V YN+++ Y + G +LM M + +GI TY T + YA
Sbjct: 250 EMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKL 309
Query: 62 S-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
HE I M + NV D + Y T+ + + ++G D+A + ++++ E+ AK
Sbjct: 310 GLAHEAIALFQEMR--NQNVEPDGICYNTMVDIHARLGNFDEAHS-IRRAMEEAGFAKDI 366
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
YN +L YGK GK + + + E K+ N Y +I + K A +F++
Sbjct: 367 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD 426
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY-RQNS 238
+ L D + + L+D C+NG ++A L+ G +V ++ L Y RQ
Sbjct: 427 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCL 486
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVE 265
+ K ++ L T++ KPSV+
Sbjct: 487 MVRKNFPKLRFFLLPRVTML-LKPSVD 512
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 121/258 (46%), Gaps = 16/258 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M + G++ + +N+++ + +E+ D + EMEE GI D TY T ++ Y
Sbjct: 213 FREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCR 272
Query: 61 ASD-HEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IK 115
H G + TM ++ +P+V + Y+T+ +GY K+GL +A+A+ ++ Q ++
Sbjct: 273 GGQMHLGAALMETMAKSSGIEPSV----ITYSTMIDGYAKLGLAHEAIALFQEMRNQNVE 328
Query: 116 GAKVNSAYNVILTLYGKYGKKDD---VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172
+ YN ++ ++ + G D+ + R E A ++ Y ++ S K
Sbjct: 329 PDGI--CYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVT--YNALLDSYGKQGKFRE 384
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A + EE + + + + LID YC++G A L K G + V + L
Sbjct: 385 AMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVD 444
Query: 233 GYRQNSQIHKAVEAMKKV 250
G +N +A+ ++++
Sbjct: 445 GCCKNGSPDEALALLEEM 462
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 131/300 (43%), Gaps = 18/300 (6%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
VVYN+++ K G++ + EM E G++ DR T+ T +SA A+ E D+I
Sbjct: 191 VVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAE 250
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA---YNVILTLY 130
ME + +A D V Y T+ Y + G + A++ E K + + + Y+ ++ Y
Sbjct: 251 ME-ERGIARDDVTYNTLIATYCRGGQMHLGAALM---ETMAKSSGIEPSVITYSTMIDGY 306
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K G + + ++ E+ + V+ Y ++ +L + + A I E D
Sbjct: 307 AKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDI 366
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N L+D Y + G +A +L+ K +G ++ ++ L Y ++ H +
Sbjct: 367 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHG-FH------RD 419
Query: 250 VLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLD 306
+A +Q + K +P V + +D G A +E + D G P + + LLD
Sbjct: 420 AMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLD 479
>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM LG+ VYN ++ K+G+ EK + L+ EMEE G+ D +TY T +S Y
Sbjct: 191 FKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCK 250
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S H + ME VA + V Y + +G+ + G + +A + ++ ++ + V
Sbjct: 251 KSMHFEALSVQDRMERS-GVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVT 309
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG---YRNVISSLLKLDDLESAEKIF 177
Y ++ Y + D+ LR+ E+ + + + G Y +++ L + + A ++
Sbjct: 310 --YTTLIDGYCRMNDIDEALRLREVMES--RGFSPGVVTYNSILRKLCEDGRIREANRLL 365
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
E + + D N LI+ YC K E++V+ K+K + I
Sbjct: 366 TEMSGKKIEPDNITCNTLINAYC------KIEDMVSAVKVKKKMI 404
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 5/212 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G + V YNS+L+ + G + + L+ EM I D T T ++AY D
Sbjct: 333 MESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIED 392
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA- 122
K+ M + + LD Y + +G+ KV L+ A L E KG A
Sbjct: 393 MVSAVKVKKKM-IESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIE--KGFSPGYAT 449
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWE 181
Y+ ++ + K+D++ ++ E ++K + YR +I + KL+ ++ A+ +FE E
Sbjct: 450 YSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFESME 509
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ L D+ I + Y R G + +A L +
Sbjct: 510 KKGLVGDSVIFTTMAYAYWRTGKVTEASALFD 541
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 28/215 (13%)
Query: 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK-- 151
Y K G+++ ++ + EQI+ + L K+ +W+++KK VK
Sbjct: 143 YAKAGMINDSIVVF----EQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLG 198
Query: 152 VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
V+ N Y ++ + K D E AEK+ E E + + D N LI VYC+ + +A
Sbjct: 199 VVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEAL 258
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV-------LAAYQTLVKWKP 262
++ + + G ++ ++ G+ + ++ +A +++ Y TL+
Sbjct: 259 SVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTLI---- 314
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
D + DI A E++ +GF P
Sbjct: 315 ---------DGYCRMNDIDEALRLREVMESRGFSP 340
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 126/269 (46%), Gaps = 14/269 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYY-KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+ +M + G+ YN+++ +Y K+ +FE L S+ ME +G+ + TY + + ++
Sbjct: 226 LSEMEEKGVFPDIFTYNTLISVYCKKSMHFEAL-SVQDRMERSGVAPNIVTYNSFIHGFS 284
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ E +V + V Y T+ +GY ++ +D+AL + + E + V
Sbjct: 285 REGRMREATRLFR--EIKDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGV 342
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN IL + G+ + R+ E+ K ++ N +I++ K++D+ SA K+ +
Sbjct: 343 VT-YNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKK 401
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-YRQN 237
+ L D LI +C+ LE A+ + KG ++ +L G Y QN
Sbjct: 402 KMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQN 461
Query: 238 SQ--IHKAVEAMKKV-----LAAYQTLVK 259
Q I K +E +K +A Y+ L++
Sbjct: 462 KQDEITKLLEEFEKRGLCADVALYRGLIR 490
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 8/267 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEM-EENGITYDRYTYCTRLSAYADA 61
+M + G+AR V YN+++ Y + G +LM M + +GI TY T + YA
Sbjct: 249 EMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKL 308
Query: 62 S-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
HE I M + NV D + Y T+ + + ++G D+A + ++++ E+ AK
Sbjct: 309 GLAHEAIALFQEMR--NQNVEPDGICYNTMVDIHARLGNFDEAHS-IRRAMEEAGFAKDI 365
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
YN +L YGK GK + + + E K+ N Y +I + K A +F++
Sbjct: 366 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD 425
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY-RQNS 238
+ L D + + L+D C+NG ++A L+ G +V ++ L Y RQ
Sbjct: 426 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCL 485
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVE 265
+ K ++ L T++ KPS++
Sbjct: 486 MVRKTFPKLRFFLLPRVTML-LKPSMQ 511
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 121/258 (46%), Gaps = 16/258 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M + G++ + +N+++ + +E+ D + EMEE GI D TY T ++ Y
Sbjct: 212 FREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCR 271
Query: 61 ASD-HEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IK 115
H G + TM ++ +P+V + Y+T+ +GY K+GL +A+A+ ++ Q ++
Sbjct: 272 GGQMHLGAALMETMAKSSGIEPSV----ITYSTMIDGYAKLGLAHEAIALFQEMRNQNVE 327
Query: 116 GAKVNSAYNVILTLYGKYGKKDD---VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172
+ YN ++ ++ + G D+ + R E A ++ Y ++ S K
Sbjct: 328 PDGI--CYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVT--YNALLDSYGKQGKFRE 383
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A + EE + + + + LID YC++G A L K G + V + L
Sbjct: 384 AMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVD 443
Query: 233 GYRQNSQIHKAVEAMKKV 250
G +N +A+ ++++
Sbjct: 444 GCCKNGSPDEALALLEEM 461
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 131/300 (43%), Gaps = 18/300 (6%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
VVYN+++ K G++ + EM E G++ DR T+ T +SA A+ E D+I
Sbjct: 190 VVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAE 249
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA---YNVILTLY 130
ME + +A D V Y T+ Y + G + A++ E K + + + Y+ ++ Y
Sbjct: 250 ME-ERGIARDDVTYNTLIATYCRGGQMHLGAALM---ETMAKSSGIEPSVITYSTMIDGY 305
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K G + + ++ E+ + V+ Y ++ +L + + A I E D
Sbjct: 306 AKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDI 365
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N L+D Y + G +A +L+ K +G ++ ++ L Y ++ H +
Sbjct: 366 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHG-FH------RD 418
Query: 250 VLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLD 306
+A +Q + K +P V + +D G A +E + D G P + + LLD
Sbjct: 419 AMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLD 478
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 126/267 (47%), Gaps = 13/267 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M ++G T + N+++ G L+ M E G + TY L+ +
Sbjct: 183 RMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSG 242
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
++L ME + N+ LD V Y+ + +G K G LD A + +E +IKG K +
Sbjct: 243 QTALAMELLRKME-ERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF--NEMEIKGFKADII 299
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ + G+ DD ++ ++ K+ + + +I S +K L A+++ +E
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + +T N LID +C+ LE+A +V+ KG + + ++ L GY + ++I
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Query: 241 HKAVE-----AMKKVLA---AYQTLVK 259
+E +++ V+A Y TLV+
Sbjct: 420 DDGLELFREMSLRGVIANTVTYNTLVQ 446
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 131/302 (43%), Gaps = 21/302 (6%)
Query: 5 RDLGLAR---TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
RD+ +R T + +N + KT +E + +L +ME GI + YT ++ +
Sbjct: 77 RDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRC 136
Query: 62 SD----HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ KI+ + +P D VI+ T+ NG + +AL ++ + E
Sbjct: 137 RKLSYAFSTMGKIMK-LGYEP----DTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191
Query: 118 KVNSAYNVI--LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ + ++ L L GK D V+ I + + + Y V++ + K A +
Sbjct: 192 TLITLNTLVNGLCLNGKVS--DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAME 249
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ + E + + D + +ID C++G L+ A NL N ++KG + + ++ L G+
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFC 309
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + ++ ++ K P+V + + +D F EG + A+ ++ + +G
Sbjct: 310 NAGRWDDGAKLLRDMIKR-----KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI 364
Query: 296 IP 297
P
Sbjct: 365 AP 366
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 25/262 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM + + V Y+ ++ K G+ + +L +EME G D TY T + + +
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + K+L M + PNV V ++ + + + K G L +A +LK E +G
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNV----VTFSVLIDSFVKEGKLREADQLLK--EMMQRGI 364
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWELYKK--------AVKVLNNGYRNVISSLLKLD 168
N+ YN ++ + K + ++ +++ +L +L NGY K +
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY-------CKAN 417
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
++ ++F E + + +T N L+ +C++G LE A+ L + + S+
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477
Query: 229 YLATGYRQNSQIHKAVEAMKKV 250
L G N ++ KA+E K+
Sbjct: 478 ILLDGLCDNGELEKALEIFGKI 499
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 106/238 (44%), Gaps = 5/238 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + YN+++ + G ++ L+ +M + I+ + T+ + ++
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVI 126
D++L M +A + + Y ++ +G+ K L++A+ M+ KG + +N++
Sbjct: 353 DQLLKEM-MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS--KGCDPDIMTFNIL 409
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ Y K + DD L ++ E+ + V Y ++ + LE A+K+F+E S+ +
Sbjct: 410 INGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
D L+D C NG LEKA + + E+ + + + G S++ A
Sbjct: 470 RPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDA 527
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH-EG 66
G T YNSML+++ K G + + +++ EME+N D TY ++AY A H EG
Sbjct: 338 GYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEG 397
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNV 125
I TM A V + + Y TV N YGK G DKAL + + +E G N YN
Sbjct: 398 AAVIDTM--ASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKEL--GCVPNVCTYNN 453
Query: 126 ILTLYGKYGKKDDVLRI 142
+L L GK + +D+++I
Sbjct: 454 VLVLLGKRSRSEDMIKI 470
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 138/360 (38%), Gaps = 48/360 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGN-FEKLDSLMHEMEENGITYDRYTYCTRLSA-- 57
+KM++ GL T V YN ML +Y K G + + L+ EM G+ +D +T T +SA
Sbjct: 260 FEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACG 319
Query: 58 ---------------------------------YADASDHEGIDKILTMMEADPNVALDW 84
+ A + IL ME D N D
Sbjct: 320 REGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEME-DNNCEPDA 378
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW 143
+ Y + Y + G D+ A++ KG N+ Y ++ YGK G D L ++
Sbjct: 379 ITYNELVAAYVRAGFHDEGAAVIDTMAS--KGVMPNAITYTTVINAYGKAGDADKALEVF 436
Query: 144 ELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
K+ V N Y NV+ L K E KI + + D N ++ V
Sbjct: 437 GQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEK 496
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGY-RQNSQIHKAVEAMKKVLAAYQTLVKWK 261
G + ++ K G E +++ L + Y R S++ A + V A +
Sbjct: 497 GKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFT------ 550
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLREL 321
P + + A L+ G+ AE+ + + KGF P + LL + + N+ L ++
Sbjct: 551 PCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKV 610
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 145/373 (38%), Gaps = 76/373 (20%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++LG YN++L L K E + ++ +M+ NG DR T+ T L+ +
Sbjct: 438 QMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKG 497
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG------------------------ 98
+ + ++L M+ + D + T+ + YG+ G
Sbjct: 498 KQKFVSQVLREMK-NCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTY 556
Query: 99 -LLDKALAMLK--KSEEQI------KGAKVN-SAYNVILTLYGKYGK------------K 136
L ALA K+ E + KG K N ++Y+++L Y K G
Sbjct: 557 NALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYD 616
Query: 137 DDVLRIWELYKKAV-----------------KVLNNGYR---NVISSLLKL----DDLES 172
V W L + V ++ NNGY+ VI+S+L + LE
Sbjct: 617 GHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEK 676
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A ++ + L + N LID+Y R G KAE ++ + G V S+ +
Sbjct: 677 AHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIK 736
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
G+ + + +A+ + ++ A +P + + + G A+ I + +
Sbjct: 737 GFCKKGLVQEAIRILSEMTAN-----GVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIE 791
Query: 293 KGFIPTDLQDKLL 305
G +P +L K++
Sbjct: 792 HGCMPNELTYKIV 804
>gi|302822814|ref|XP_002993063.1| hypothetical protein SELMODRAFT_431180 [Selaginella moellendorffii]
gi|300139155|gb|EFJ05902.1| hypothetical protein SELMODRAFT_431180 [Selaginella moellendorffii]
Length = 570
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 14/272 (5%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
N M+ + +++ L E + G+ D +Y L + + G++++ M++
Sbjct: 239 NQMMLFSLQPDLRKRIPDLFEEAKSLGVAPDVSSYNLYLGFHCKEKNASGLEEVYQMLQE 298
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA---KVNSAYNVILTLYGKY 133
DPN D + GY VG DKA L + EE + + + YN +L LYG
Sbjct: 299 DPNARPDESTLLILACGYISVGCFDKAGKALVELEEGLDSGLFRRKQATYNKLLRLYGDT 358
Query: 134 GKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
K+ V IW L + +K +++ Y I++ K + + AE+IF + + +T
Sbjct: 359 KDKEGVESIWSILSSRPLKAVDS-YSYAIAAFGKAEGVHKAEEIFAKVDG---LLETNQV 414
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK---K 249
++ VY G +KA L K + + + YL GY + ++ KA++
Sbjct: 415 IAMLSVYAHYGYADKARELFQKLPRKRMKHRLVVYKYLIAGYLREGEVKKALQVFSMGCT 474
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIG 281
VL W+ V L LD+F G++
Sbjct: 475 VLRDRCICSAWERVVLDL---LDHFASRGEVA 503
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/339 (19%), Positives = 139/339 (41%), Gaps = 52/339 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KMR G+ + YN++++ Y N + S + EME GI + T+ +S Y
Sbjct: 146 FEKMRAAGIDSSVHAYNNLIRAYIMAQNLQGAVSCVEEMEIEGIFPNAATFSAIISGYGS 205
Query: 61 ASDHEGIDKILTMMEADPNVALDW----VIYATVGNGYGKVGLLDKALAMLKKSEEQ--- 113
+ + E +K +V+ +W IY+++ + Y K G +++A A++ EEQ
Sbjct: 206 SGNVEAAEKWF-----QRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLE 260
Query: 114 ---------IKG------------------AKVNSA-------YNVILTLYGKYGKKDDV 139
+ G A++++ Y ++ LY K GK
Sbjct: 261 ATLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKA 320
Query: 140 LRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
L E+ + + + N Y ++ ++L D +A +FE+ + D N L+
Sbjct: 321 LEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKA 380
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV 258
+C++ + +A L+ K +G ++++ + G+ + + A + + ++ L
Sbjct: 381 FCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEM-----KLA 435
Query: 259 KWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+P+ + + G I A + I+ + G P
Sbjct: 436 GCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQP 474
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 121/318 (38%), Gaps = 44/318 (13%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D GL+ T V Y ++ LY K G K EM+ GIT +R TY + Y D
Sbjct: 294 DTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFA 353
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+ M ++ + DWV Y + + K + +A+ +L + K
Sbjct: 354 NAFSVFEDM-SEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGR-------MKTRGCSPT 405
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
I T Y +I +K D+ A K E +
Sbjct: 406 IQT----------------------------YITIIDGFMKTGDVRMAYKTVSEMKLAGC 437
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ N ++ + G +++A ++++ +L G + + +S+ L G+ +I A +
Sbjct: 438 RPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFK 497
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
+K+V Q KP + S A+ L K G +N I + + F + + +
Sbjct: 498 CLKRVNEITQ-----KPPIISYASLL---KACCKAGRMQNAIAVTEEMAFAGVPMNNYIF 549
Query: 306 DNVQNGKSNLETLRELYG 323
+ + +G + + E YG
Sbjct: 550 NTLLDGWAQRGDMWEAYG 567
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ G YN ++ + G ++ S++ EME G+ + +Y T + +A
Sbjct: 429 VSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFAS 488
Query: 61 ASD----HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ + + ++ + + P ++ YA++ K G + A+A+ + E G
Sbjct: 489 IGEIGLAFKCLKRVNEITQKPPIIS-----YASLLKACCKAGRMQNAIAVTE--EMAFAG 541
Query: 117 AKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLD 168
+N+ +N +L + + G +WE Y K+ G Y + +++ K
Sbjct: 542 VPMNNYIFNTLLDGWAQRGD------MWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAG 595
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
D++ A + EE + Q L + + LI + EKA L+ ++++K
Sbjct: 596 DMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKA--LICYDEMKA 644
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 9/235 (3%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
++NS++ Y G E+ L+ +M+ G+ D +Y T + Y A D + ++ L +
Sbjct: 549 MFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNEL 608
Query: 75 EA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
A PN VIY + GYG+ G + A+ +L + E I N Y ++
Sbjct: 609 MACGLKPNA----VIYNALIGGYGRNGNISGAIGVLD-TMESIGIQPTNVTYCSLMHWMC 663
Query: 132 KYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G D+ ++E +K +++V GY +I L K+ ++ A FEE S+++ +
Sbjct: 664 HAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKI 723
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
L+ YC++G E+A L + G S+ L TG+ Q + KA+E
Sbjct: 724 TYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKAIE 778
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 130/298 (43%), Gaps = 23/298 (7%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH-EGIDKI 70
T V YN + + K G E+ + ++ EM G+T + + ++ + E + ++
Sbjct: 370 TAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRL 429
Query: 71 LTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
++ M PN AL + G + L ML+K G +N A + L
Sbjct: 430 ISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEK------GLCINIATSNAL 483
Query: 128 TLYGKYGKKD-----DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
++G K+ +VLR + K +++ N Y +I K +E A K+ ++
Sbjct: 484 -IHGLCEGKNMKGATEVLR--TMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIR 540
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D + N +I YC G +E+A +L+ K++G + V S+ + GY + I K
Sbjct: 541 KGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQK 600
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
A E + +++A KP+ A + + G+I GA ++ + G PT++
Sbjct: 601 ANEYLNELMAC-----GLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNV 653
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 14/208 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ ++ GL V+YN+++ Y + GN ++ ME GI TYC+ +
Sbjct: 605 LNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMC- 663
Query: 61 ASDHEG-IDKILTMMEADP--NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKG 116
H G +D+ TM E ++ + V Y + G K+G +D+A+ ++ + I
Sbjct: 664 ---HAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPP 720
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
K+ Y ++ Y K G ++ +++ E+ + N Y +++ ++D L+ A +
Sbjct: 721 NKIT--YTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKAIE 778
Query: 176 IFEEWES---QALCYDTRIPNFLIDVYC 200
E S Q C D + N + +C
Sbjct: 779 KAAEISSIMTQNDCLDNVLVNRITTPWC 806
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 133/297 (44%), Gaps = 13/297 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V Y+ ++ K G + + M + G+ + TY T L YA
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + D +++ + Y K G +D+A+ + K +Q G N
Sbjct: 349 KGALVEMHGLLDLMVRN-GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ--GLNPN 405
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D + +E + + + N Y ++I L + E AE++
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 465
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C +T N +ID +C+ G + ++E L G + +V ++ L GY
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAG 525
Query: 239 QIHKAVEAMKKVLAA--------YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ +A++ + +++ Y TL+ + + L FK+ G + + I
Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 582
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G V Y +++ ++K G+ +K S HEM + GI D TY + ++A A
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ ++L M + V D + Y ++ +GY G +A+ LKK V + Y+
Sbjct: 248 DKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVT-YS 305
Query: 125 VILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+++ K G+ + +I++ + K+ +K Y ++ L + +
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ D + + LI Y + G +++A + + + +G
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 401
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 5/210 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M +GL TV Y++++ Y K E L EME +G++ D TY L
Sbjct: 534 LSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ K L + + ++ Y + +G K L D AL M + + K+
Sbjct: 594 -TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL--CLMDLKLE 650
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFE 178
+ +N+++ K G+ D+ ++ + V N YR + +++ LE +++F
Sbjct: 651 ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFL 710
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E D+ + NF++ + G + +A
Sbjct: 711 SMEDNGCTVDSGMLNFIVRELLQRGEITRA 740
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 4/208 (1%)
Query: 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD--PNVALDWVIY 87
+ +D ++ M E G + ++Y L D + + ++L MM D D V Y
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LY 146
TV NG+ K G DKA + + ++ V + YN I+ K D + + +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVT-YNSIIAALCKAQAMDKAMEVLNTMV 258
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
K V Y +++ + A ++ S + D + L+D C+NG
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGY 234
+A + + +G + + ++ L GY
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGY 346
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 136/303 (44%), Gaps = 16/303 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q + + GL +TTV+YN+++ Y + G+ E S+ +M+ I D TY ++
Sbjct: 351 LQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGK 410
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E D ++ M + N +++ + T+ + YG+ G L+K +L S+ Q KG K
Sbjct: 411 VERITEAHDLVIEMEKNGVNPSVE--TFNTLIDAYGRAGQLEKCFIIL--SDMQEKGLKP 466
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N +Y I+ + K GK + + I +++ K V Y +I + ++ + A +
Sbjct: 467 NVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLA 526
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL--ATGYR 235
E+ +S + N LI C+ + +AE L++ + G V S+ L A YR
Sbjct: 527 EKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYR 586
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
N+ +A+E K++ KPS + G + EN + + DK
Sbjct: 587 SNTD--RALELEKEMWKC-----GIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDV 639
Query: 296 IPT 298
+P
Sbjct: 640 VPC 642
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 128/314 (40%), Gaps = 26/314 (8%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M GL + YN +L + G + +++ EM + D +TY ++
Sbjct: 247 SQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRT 306
Query: 62 SDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D + +L++ E V + + + NG K G + KA E++ V
Sbjct: 307 GDSQ---TMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKA--------EEVLQTLV 355
Query: 120 NSA-------YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLE 171
NS YN ++ Y + G + I++ K + ++ + Y +I+ L K++ +
Sbjct: 356 NSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERIT 415
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A + E E + N LID Y R G LEK +++ + KG + +V S+ +
Sbjct: 416 EAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIV 475
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ +N +I +AV + + + P + A +D + + G A E +
Sbjct: 476 NAFCKNGKILEAVAILDDMF-----IKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMK 530
Query: 292 DKGFIPTDLQDKLL 305
G P+ + LL
Sbjct: 531 SSGVPPSIVTYNLL 544
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 18/294 (6%)
Query: 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDK 69
A YN ++ +K G L EM E + + TY T + + D E +
Sbjct: 185 APNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFR 244
Query: 70 ILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126
+ + M PNV + Y + +G + G + + A+L + + K Y+++
Sbjct: 245 LWSQMLRHGLKPNV----ITYNVLLSGLCRAGRMGETAAVLDEMASR-KMVPDGFTYSIL 299
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ + G +L ++ E KK VK+ +++ L K + AE++ + + L
Sbjct: 300 FDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGL 359
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKA 243
T I N LI+ YC+ G LE A ++ +++K R I Y L G ++ +
Sbjct: 360 LQTTVIYNTLINGYCQIGDLEGAFSI--FQQMKSRLIRPDHITYNALINGL---GKVERI 414
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
EA V+ + V PSVE+ +D + G + + + +KG P
Sbjct: 415 TEAHDLVIEMEKNGV--NPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKP 466
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 22/244 (9%)
Query: 62 SDHEGIDKILTMMEADPNVALDW--VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D G ++L A P+ W + A V G LD+A+ ML++ A
Sbjct: 134 ADVRGAFELLVAARARPDT-FTWNKAVQACV-----VAGDLDEAVGMLRRMGCDGAPAPN 187
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+YNV++ K G D ++++ E+ +KAV + Y +I +K DLES +++
Sbjct: 188 AFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWS 247
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQ 236
+ L + N L+ CR G + E +++ R++ + Y L G
Sbjct: 248 QMLRHGLKPNVITYNVLLSGLCRAGRM--GETAAVLDEMASRKMVPDGFTYSILFDG--- 302
Query: 237 NSQIHKAVEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
H + +L+ ++ VK K + + L+ +G I AE ++ L + G
Sbjct: 303 ----HSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSG 358
Query: 295 FIPT 298
+ T
Sbjct: 359 LLQT 362
>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
Length = 356
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 119/247 (48%), Gaps = 7/247 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++ G+A T YN ++ + K G+ +K++ ++ EM + D +++ ++AYA +
Sbjct: 88 EIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSR 147
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI--KGAKVN 120
E ++ + M+A V D V Y T+ + + + +A+ M EE + K
Sbjct: 148 KPERGLQVFSNMKA-AGVLPDIVTYTTLIQMFSRSSMHKEAIEMF---EEMVVNKCQPDF 203
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
Y++++++YGK G D L I+ + N Y ++IS+ L LE + K F +
Sbjct: 204 FVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQ 263
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E+ D + N +ID Y + G++ A NL++ +G + S+ + G+
Sbjct: 264 MEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGH 323
Query: 240 IHKAVEA 246
+ +A+ A
Sbjct: 324 VEEALAA 330
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 121/284 (42%), Gaps = 12/284 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN+M+ YY+ + + H+M GI D TY +S + ID++ ++
Sbjct: 33 YNAMIAAYYQAKRPKDAWDVYHQMLAEGIDPDEVTYDILVS--GSGKNGYPIDRLFLEIK 90
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
+ VAL Y V + K G +DK ++++ Q + S +N ++ Y K
Sbjct: 91 SR-GVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFS-FNALIAAYAMSRK 148
Query: 136 KDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ L+++ KA VL + Y +I + + A ++FEE D + +
Sbjct: 149 PERGLQVFS-NMKAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYS 207
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
L+ VY + GL+ A + + +L+G ++ ++ L + + + ++ + + + A
Sbjct: 208 LLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQ-MEA 266
Query: 254 YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Y + V L +D + G + A N + L +G P
Sbjct: 267 YGC----RADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCP 306
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 125/286 (43%), Gaps = 11/286 (3%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ Y+ ++ + K + +L +M + + D T+ T + Y +A + +++L
Sbjct: 476 VITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLE 535
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYG 131
M A + + D Y ++ +G+ KVG + +A +LK+ + +G + N Y ++ +
Sbjct: 536 EMVAS-DCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAK--RGCQPNVVTYTALIDAFC 592
Query: 132 KYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YDT 189
+ GK R+ E + V+ YR++I DLE A KI E E C D
Sbjct: 593 RAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADM 652
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
++D CR G + A L+ K G + L G Q ++ KA+E +++
Sbjct: 653 FAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEE 712
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI-ELLNDKG 294
+ + K +P+ E+ A + EG A ELL +KG
Sbjct: 713 MTLSR----KSRPNAEAYEAVIQELAREGRHEEANALADELLGNKG 754
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 113/251 (45%), Gaps = 5/251 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+ G YN ++ + K + L+ EM+E+G+ + TY T + + +
Sbjct: 151 KMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQT 210
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ K+ M + + V Y T+ +G + GL+D+A +L + E +G + +
Sbjct: 211 KVDTAYKLFRQM-VENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRE--RGLQPDKF 267
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+Y+ ++ K GK D L+++E Y +I+ L K L+ A K+FE+
Sbjct: 268 SYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKM 327
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ D L+D C+ L++A+ ++ + + +V ++ L G + Q+
Sbjct: 328 RENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQV 387
Query: 241 HKAVEAMKKVL 251
A E K+++
Sbjct: 388 RDAQEVFKRMI 398
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 117/253 (46%), Gaps = 3/253 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M++ GLA V Y++++ + + + L +M ENG + TY T LS
Sbjct: 184 LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCR 243
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L M + + D Y T+ G K G +D AL + + + V
Sbjct: 244 NGLMDEAYELLDEMR-ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV- 301
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY+ ++ K G+ D+ +++E + + + + + ++ L K D L+ A+++ E
Sbjct: 302 VAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 361
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E + + + LID C+ G + A+ + ++G E +V ++ L G+ +
Sbjct: 362 MEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG 421
Query: 240 IHKAVEAMKKVLA 252
+ A+ M+++ A
Sbjct: 422 VDSALLLMEEMTA 434
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 137/326 (42%), Gaps = 16/326 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTR---LSA 57
+KMR+ V + +++ K ++ ++ ME+ T + TY + L
Sbjct: 324 FEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCK 383
Query: 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
D + + K + + +PNV V Y ++ +G+ +D AL +++ E G
Sbjct: 384 TGQVRDAQEVFKRMIVRGIEPNV----VTYNSLIHGFCMTNGVDSALLLME--EMTATGC 437
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ YN ++ K G+ + R++ ++ K Y +I KL+ ++ A
Sbjct: 438 LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMART 497
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F++ QA+ D + L++ YC GL++ AE L+ V ++ L G+
Sbjct: 498 LFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 557
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ ++ +A +K++ +P+V + A +D F G A +E + G
Sbjct: 558 KVGRMVEARRVLKRMAKR-----GCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGV 612
Query: 296 IPTDLQDKLLDNVQNGKSNLETLREL 321
P + + L G +LE R++
Sbjct: 613 QPNVITYRSLIGGFCGTGDLEEARKI 638
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 127/327 (38%), Gaps = 48/327 (14%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ Y +++ K+G+ +K L+ EM E+G D Y + A A +
Sbjct: 54 GITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKA 113
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
ME + NV + W I +G K L +A K ++ KG N YNV+
Sbjct: 114 LDYFRSMECEKNV-ITWTIMI---DGLCKANRLPEATTYFAKMKK--KGTVPNEWTYNVL 167
Query: 127 LTLYGKYGKKDDVLRIWELYKK------AVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ + K K V R + L K+ A V+ Y VI + +++A K+F +
Sbjct: 168 INGFCKVHK---VHRAYLLLKEMKESGLAPNVVT--YSTVIHGFCRQTKVDTAYKLFRQM 222
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ N L+ CRNGL+++A L++ + +G + S+ L G + +I
Sbjct: 223 VENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI 282
Query: 241 HKAVEAMK--------KVLAAYQTLV----------------------KWKPSVESLAAC 270
A++ + + AY TL+ +P V + A
Sbjct: 283 DMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTAL 342
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIP 297
+D + A+ +E + D+ P
Sbjct: 343 MDGLCKGDRLQEAQQVLETMEDRNCTP 369
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 11/185 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G V Y +++ + + G L+ EM NG+ + TY + + +
Sbjct: 569 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCG 628
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E KIL +E D N D Y + +G + G + AL +L E IK +
Sbjct: 629 TGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELL----EAIKQSGTP 684
Query: 121 SAYNVILTLY-----GK-YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+++ + L GK GK +VL L +K+ + Y VI L + E A
Sbjct: 685 PRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKS-RPNAEAYEAVIQELAREGRHEEAN 743
Query: 175 KIFEE 179
+ +E
Sbjct: 744 ALADE 748
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 110/266 (41%), Gaps = 25/266 (9%)
Query: 40 EENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKV 97
++ G ++ YTY A A ID+ +++ P + + YA V G K
Sbjct: 16 KQQGFDHNVYTYNRLFEALLRARR---IDETCHILKNGWPPGITPNVFTYAVVIQGLCKS 72
Query: 98 GLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGK---YGKKDDVLRIWELYKKAVKVL 153
G LDKA +L++ E G ++A YN ++ K K D R E K +
Sbjct: 73 GDLDKACELLEEMRES--GPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVIT-- 128
Query: 154 NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ +I L K + L A F + + + + N LI+ +C+ + +A L+
Sbjct: 129 ---WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLK 185
Query: 214 HEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL--AAYQTLVKWKPSVESLAACL 271
K G +V ++ + G+ + +++ A + ++++ LV + + L C
Sbjct: 186 EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL--CR 243
Query: 272 DYFKDEGDIGGAENFIELLNDKGFIP 297
+ DE A ++ + ++G P
Sbjct: 244 NGLMDE-----AYELLDEMRERGLQP 264
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 61/331 (18%), Positives = 136/331 (41%), Gaps = 42/331 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKL------------YYKTGNFEK--------LDSL----- 35
+++MR+ G +YN ++ Y+++ EK +D L
Sbjct: 82 LEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANR 141
Query: 36 -------MHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA 88
+M++ G + +TY ++ + +L M+ + +A + V Y+
Sbjct: 142 LPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK-ESGLAPNVVTYS 200
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIW-ELY 146
TV +G+ + +D A + ++ E G N YN +L+ + G D+ + E+
Sbjct: 201 TVIHGFCRQTKVDTAYKLFRQMVEN--GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 258
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
++ ++ Y +++ L K ++ A K+FE+ + D + LI C+ G L+
Sbjct: 259 ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLD 318
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVES 266
+A L + E V ++ L G + ++ +A + ++ + T P+V +
Sbjct: 319 EACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCT-----PNVIT 373
Query: 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ +D G + A+ + + +G P
Sbjct: 374 YSSLIDGLCKTGQVRDAQEVFKRMIVRGIEP 404
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 145/307 (47%), Gaps = 27/307 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA-S 62
M+ GL V YN+++ Y K G+ ++ ++ M++ + D TY ++ +A S
Sbjct: 266 MKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGS 325
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
EG++ +M+A ++ L D V Y T+ +G ++GL +A ++++ E G K N
Sbjct: 326 MREGLE----LMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMEND--GVKAN 379
Query: 121 SA-YNVILTLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+N+ L K K++ V R + +++ + ++ Y +I + LK+ DL A +
Sbjct: 380 QVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVT--YHTLIKAYLKVGDLSGALE 437
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E + + +T N ++D C+ L++A NL+N +G + ++ L G+
Sbjct: 438 MMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFF 497
Query: 236 QNSQIHKAVEA---MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+ ++ KA+E MKK VK P+V + + + G A + L +
Sbjct: 498 REEKVEKALEMWDEMKK--------VKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAE 549
Query: 293 KGFIPTD 299
G +P D
Sbjct: 550 SGLLPDD 556
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 4/247 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M+ L L V YN+++ ++ G + LM +ME +G+ ++ T+ L
Sbjct: 333 MDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCK 392
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + + + + + D V Y T+ Y KVG L AL M+++ + KG K+N
Sbjct: 393 EEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQ--KGIKMN 450
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ N IL K K D+ + +K+ V Y +I + + +E A ++++
Sbjct: 451 TITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWD 510
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + N LI C +G E A + G ++ + GY +
Sbjct: 511 EMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEG 570
Query: 239 QIHKAVE 245
++ KA E
Sbjct: 571 RVEKAFE 577
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 56 SAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
S+++ +S E D ++ + V+L+ + + NGY G L+ AL ML++ + K
Sbjct: 181 SSFSISSAREVFDDMVKI-----GVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFK 235
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAE 174
N YN IL K G+ D+ + KK V N Y N++ KL L+ A
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAF 295
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
+I E + + D N LI+ C G + + L++ K
Sbjct: 296 QIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMK 337
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 139/306 (45%), Gaps = 20/306 (6%)
Query: 3 KMRDLGLART----TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
KMRD LAR V YN+ L K F D L +EM E G+ D YT+ T + Y
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512
Query: 59 ADASDHEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ +DK L + EA N+ D V Y T+ +G+ K G + +A + ++ I+
Sbjct: 513 CKDGN---MDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELW---DDMIRK 566
Query: 117 AKV--NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ + +Y +L + G + L + ++ +K ++ +I + D+ A
Sbjct: 567 DIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKA 626
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ + S + D+ N LID Y + LEKA L+N + +G + ++ ++ + G
Sbjct: 627 YEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNG 686
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+ ++ +A + ++K++ + P + ++ ++ + ++ A F + + +
Sbjct: 687 FCAEGKMQEAEQVLRKMIE-----IGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741
Query: 294 GFIPTD 299
G +P D
Sbjct: 742 GLVPDD 747
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 17/234 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ N M+ K FE + + +ME G+ D TY T ++AY E
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311
Query: 68 DKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-Y 123
++L + +P + + Y + G K+G D+A +L + + G N+A Y
Sbjct: 312 FQLLNSFSSRGMEPGL----LTYNAILYGLCKIGKYDRAKDVLIEMLQL--GLTPNAATY 365
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVK--VLNN--GYRNVISSLLKLDDLESAEKIFEE 179
N +L + ++D++L E++ + + VL + + ++I L + L A F E
Sbjct: 366 NTLLV---EICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFRE 422
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E + D I LID +CRNG L A + + +G + V ++ G
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 122/302 (40%), Gaps = 50/302 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DA 61
+M LGL YN++L + N + + EM G+ D ++ + + A +
Sbjct: 352 EMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNG 411
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
++ + M + + D VIY + +G+ + G L AL M + E +G ++
Sbjct: 412 HLYQALMHFREMERS--GIVPDNVIYTILIDGFCRNGALSDALKM--RDEMLARGCFMDV 467
Query: 122 A-YNVIL--------------------------------TL---YGKYGKKDDVLRIWE- 144
YN L TL Y K G D L ++E
Sbjct: 468 VTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEA 527
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ + +K Y +I K ++ A++++++ + + D +++ +C +GL
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA--------AYQT 256
L +A NL + KG ++ + L GY ++ + KA E + K+++ +Y T
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647
Query: 257 LV 258
L+
Sbjct: 648 LI 649
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM G+ + YN+++ Y K N EK L++EME+ G+ ++ TY L+ +
Sbjct: 630 LSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCA 689
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGY 94
+ +++L M + + D Y+++ NG+
Sbjct: 690 EGKMQEAEQVLRKM-IEIGINPDGATYSSLINGH 722
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 143 WELYKKAVK---VLNNGYRNV-ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
WE+Y + V+ LN N+ +++L K E+ + E + + D N LI+
Sbjct: 242 WEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINA 301
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL------- 251
YCR GL+E+A L+N +G E + ++ + G + + +A + + ++L
Sbjct: 302 YCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPN 361
Query: 252 -AAYQTLV 258
A Y TL+
Sbjct: 362 AATYNTLL 369
>gi|8778411|gb|AAF79419.1|AC025808_1 F18O14.1 [Arabidopsis thaliana]
Length = 689
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 111/231 (48%), Gaps = 4/231 (1%)
Query: 23 YYKTGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA 81
Y ++GN +K E E + G+ + TY + ++ YA D EG+ ++L +M ++ V+
Sbjct: 20 YCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLM-SERGVS 78
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLR 141
+ V Y ++ GY K GL+++A + + +E+ K Y V++ Y + G+ D +R
Sbjct: 79 RNVVTYTSLIKGYCKKGLMEEAEHVFELLKEK-KLVADQHMYGVLMDGYCRTGQIRDAVR 137
Query: 142 IWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
+ + + + V+ ++I+ K L AE+IF +L D N L+D YC
Sbjct: 138 VHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYC 197
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
R G +++A L + K V ++ L GY + H + K +L
Sbjct: 198 RAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMML 248
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 105/241 (43%), Gaps = 38/241 (15%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M ++G+ T + NS++ Y K+G + + + M + + D +T
Sbjct: 142 MIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHT------------- 188
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
Y T+ +GY + G +D+AL + + ++ V + Y
Sbjct: 189 -----------------------YNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMT-Y 224
Query: 124 NVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N++L Y + G DVL +W++ K+ V ++ +L KL D A K++E +
Sbjct: 225 NILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLA 284
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ L DT N +I C+ + +A+ ++++ + + V+++ L+ GY + + +
Sbjct: 285 RGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKE 344
Query: 243 A 243
A
Sbjct: 345 A 345
>gi|186478651|ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g19290
gi|332191705|gb|AEE29826.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 904
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 111/231 (48%), Gaps = 4/231 (1%)
Query: 23 YYKTGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA 81
Y ++GN +K E E + G+ + TY + ++ YA D EG+ ++L +M ++ V+
Sbjct: 235 YCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLM-SERGVS 293
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLR 141
+ V Y ++ GY K GL+++A + + +E+ K Y V++ Y + G+ D +R
Sbjct: 294 RNVVTYTSLIKGYCKKGLMEEAEHVFELLKEK-KLVADQHMYGVLMDGYCRTGQIRDAVR 352
Query: 142 IWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
+ + + + V+ ++I+ K L AE+IF +L D N L+D YC
Sbjct: 353 VHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYC 412
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
R G +++A L + K V ++ L GY + H + K +L
Sbjct: 413 RAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMML 463
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 105/241 (43%), Gaps = 38/241 (15%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M ++G+ T + NS++ Y K+G + + + M + + D +T
Sbjct: 357 MIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHT------------- 403
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
Y T+ +GY + G +D+AL + + ++ V + Y
Sbjct: 404 -----------------------YNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMT-Y 439
Query: 124 NVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N++L Y + G DVL +W++ K+ V ++ +L KL D A K++E +
Sbjct: 440 NILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLA 499
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ L DT N +I C+ + +A+ ++++ + + V+++ L+ GY + + +
Sbjct: 500 RGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKE 559
Query: 243 A 243
A
Sbjct: 560 A 560
>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
Length = 477
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 110/209 (52%), Gaps = 10/209 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEM-EENGITYDRYTYCTRLSAYADAS 62
M LG+ TV YN+++ + K FE+++SL+ EM E + D T+ T + AY ++
Sbjct: 224 MSCLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSE 283
Query: 63 DHEGIDKI---LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E ++K +M +P++ W Y ++ + YGK G+ DK ++L E++ +
Sbjct: 284 QIEKMEKWYKEFQLMGIEPDI---WT-YNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTI 339
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ N I+ +G+ G +++ ++ K + +K + Y +++++ K DLE + I
Sbjct: 340 VTM-NTIIDSFGRAGNIEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILR 398
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEK 207
+ E+ + DT + N LI+VY + G + K
Sbjct: 399 QIENSDVVPDTPLFNCLINVYGQAGNVRK 427
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
+G+ YNSM+ Y K G ++K+ S+++ ME+ + T T + ++ A + E
Sbjct: 298 MGIEPDIWTYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRAGNIEE 357
Query: 67 IDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---N 120
+++ M+ PN V Y ++ N YGK G L+K ++L+ QI+ + V
Sbjct: 358 MEEYFKNMKFQGMKPNS----VTYCSLVNAYGKSGDLEKVDSILR----QIENSDVVPDT 409
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELY 146
+N ++ +YG+ G +V ++ EL+
Sbjct: 410 PLFNCLINVYGQAG---NVRKMGELF 432
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 12/206 (5%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y+ ++ + F+ L ++ +M GIT + TY T ++ + A E ++ +L M
Sbjct: 200 TYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTIINGFGKAKMFEQMESLLLEM 259
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGK- 132
+ D + + T YG ++K K E Q+ G + + YN +++ YGK
Sbjct: 260 IESDSCPPDLITFNTFIRAYGNSEQIEKMEKWYK--EFQLMGIEPDIWTYNSMISSYGKA 317
Query: 133 --YGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
Y K VL E + + +N +I S + ++E E+ F+ + Q + +
Sbjct: 318 GMYDKMKSVLNFMEKRFFSPTIVTMN----TIIDSFGRAGNIEEMEEYFKNMKFQGMKPN 373
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNH 214
+ L++ Y ++G LEK ++++
Sbjct: 374 SVTYCSLVNAYGKSGDLEKVDSILRQ 399
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 108/254 (42%), Gaps = 21/254 (8%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE-NGITYDRYTY------CTRLSAYAD 60
GL + VY +++ Y ++G K S + EM+ + D +TY CTRL +
Sbjct: 157 GLKPSIDVYTALVSAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSILIDCCTRLRRF-- 214
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + KIL M + + V Y T+ NG+GK + ++ ++L E I+
Sbjct: 215 ----DLLKKILADMSC-LGITCNTVTYNTIINGFGKAKMFEQMESLLL---EMIESDSCP 266
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEKI 176
T YG + + ++ + YK+ ++ Y ++ISS K + + +
Sbjct: 267 PDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKSV 326
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E + N +ID + R G +E+ E + K +G + + ++ L Y +
Sbjct: 327 LNFMEKRFFSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGK 386
Query: 237 NSQIHKAVEAMKKV 250
+ + K ++++
Sbjct: 387 SGDLEKVDSILRQI 400
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ G+ +V Y S++ Y K+G+ EK+DS++ ++E + + D + ++ Y
Sbjct: 362 FKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQ 421
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103
A + + ++ M+ + V D + +AT+ G+ + A
Sbjct: 422 AGNVRKMGELFLEMKENKCVP-DGITFATMIRALKAQGMTEDA 463
>gi|302780277|ref|XP_002971913.1| hypothetical protein SELMODRAFT_412643 [Selaginella moellendorffii]
gi|300160212|gb|EFJ26830.1| hypothetical protein SELMODRAFT_412643 [Selaginella moellendorffii]
Length = 570
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 112/271 (41%), Gaps = 12/271 (4%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
N M+ + +++ L E + G+ D +Y L + + G++++ M++
Sbjct: 239 NQMMLFSLQPDLRKRIPDLFEEAKSLGVAPDVSSYNLYLGFHCKEKNASGLEEVYQMLQE 298
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA---KVNSAYNVILTLYGKY 133
DPN D + GY VG DKA L + EE + + + YN +L LYG
Sbjct: 299 DPNARPDESTLLILACGYISVGCFDKAGKALVELEEGLDSGLFRRKQATYNKLLRLYGDT 358
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
K+ V IW + + Y I++ K + + AE+IF + + +T
Sbjct: 359 KDKEGVENIWSILSSRPLKAVDSYSYAIAAFGKAEGVHKAEEIFAKVDG---LLETNQVI 415
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK---KV 250
++ VY G +KA L K + + + YL GY + ++ KA++ V
Sbjct: 416 AMLSVYTHYGYADKARELFQKLPRKRMKHRLVVYKYLIAGYLREGEVKKALQVFTMGCTV 475
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIG 281
L W+ V L LD+F G++
Sbjct: 476 LRDRCICSAWERVVLDL---LDHFASRGEVA 503
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 139/306 (45%), Gaps = 20/306 (6%)
Query: 3 KMRDLGLART----TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
KMRD LAR V YN+ L K F D L +EM E G+ D YT+ T + Y
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512
Query: 59 ADASDHEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ +DK L + EA N+ D V Y T+ +G+ K G + +A + ++ I+
Sbjct: 513 CKDGN---MDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELW---DDMIRK 566
Query: 117 AKV--NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ + +Y +L + G + L + ++ +K ++ +I + D+ A
Sbjct: 567 DIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKA 626
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ + S + D+ N LID Y + LEKA L+N + +G + ++ ++ + G
Sbjct: 627 YEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNG 686
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+ ++ +A + ++K++ + P + ++ ++ + ++ A F + + +
Sbjct: 687 FCAEGKMQEAEQVLRKMIE-----IGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741
Query: 294 GFIPTD 299
G +P D
Sbjct: 742 GLVPDD 747
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 17/234 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ N M+ K FE + + +ME G+ D TY T ++AY E
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311
Query: 68 DKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-Y 123
++L + +P + + Y + G K+G D+A +L + + G N+A Y
Sbjct: 312 FQLLNSFSSRGMEPGL----LTYNAILYGLCKIGKYDRAKDVLIEMLQL--GLTPNAATY 365
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVK--VLNN--GYRNVISSLLKLDDLESAEKIFEE 179
N +L + ++D++L E++ + + VL + + ++I L + L A F E
Sbjct: 366 NTLLV---EICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFRE 422
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E + D I LID +CRNG L A + + +G + V ++ G
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 122/302 (40%), Gaps = 50/302 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DA 61
+M LGL YN++L + N + + EM G+ D ++ + + A +
Sbjct: 352 EMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNG 411
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
++ + M + + D VIY + +G+ + G L AL M + E +G ++
Sbjct: 412 HLYQALMHFREMERS--GIVPDNVIYTILIDGFCRNGALSDALKM--RDEMLARGCFMDV 467
Query: 122 A-YNVIL--------------------------------TL---YGKYGKKDDVLRIWE- 144
YN L TL Y K G D L ++E
Sbjct: 468 VTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEA 527
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ + +K Y +I K ++ A++++++ + + D +++ +C +GL
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA--------AYQT 256
L +A NL + KG ++ + L GY ++ + KA E + K+++ +Y T
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647
Query: 257 LV 258
L+
Sbjct: 648 LI 649
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM G+ + YN+++ Y K N EK L++EME+ G+ ++ TY L+ +
Sbjct: 630 LSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCA 689
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGY 94
+ +++L M + + D Y+++ NG+
Sbjct: 690 EGKMQEAEQVLRKM-IEIGINPDGATYSSLINGH 722
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 143 WELYKKAVK---VLNNGYRNV-ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
WE+Y + V+ LN N+ +++L K E+ + E + + D N LI+
Sbjct: 242 WEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINA 301
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL------- 251
YCR GL+E+A L+N +G E + ++ + G + + +A + + ++L
Sbjct: 302 YCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPN 361
Query: 252 -AAYQTLV 258
A Y TL+
Sbjct: 362 AATYNTLL 369
>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
Length = 356
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 119/247 (48%), Gaps = 7/247 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++ G+A T YN ++ + K G+ +K++ ++ EM + D +++ ++AYA +
Sbjct: 88 EIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSR 147
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI--KGAKVN 120
E ++ + M+A V D V Y T+ + + + +A+ M EE + K
Sbjct: 148 KPERGLQVFSNMKA-AGVLPDIVTYTTLIQMFSRSAMHKEAIEMF---EEMVVNKCQPDF 203
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
Y++++++YGK G D L I+ + N Y ++IS+ L LE + K F +
Sbjct: 204 FVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQ 263
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E+ D + N +ID Y + G++ A NL++ +G + S+ + G+
Sbjct: 264 MEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGH 323
Query: 240 IHKAVEA 246
+ +A+ A
Sbjct: 324 VDEALAA 330
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 121/284 (42%), Gaps = 12/284 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN+M+ YY+ + + ++M GI D TY +S + ID++ ++
Sbjct: 33 YNAMIAAYYQAKRPKDAWDVYYQMLAEGIDPDDVTYDILVS--GSGKNGYPIDRLFLEIK 90
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
+ VAL Y V + K G +DK ++++ Q + S +N ++ Y K
Sbjct: 91 SR-GVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFS-FNALIAAYAMSRK 148
Query: 136 KDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ L+++ KA VL + Y +I + + A ++FEE D + +
Sbjct: 149 PERGLQVFS-NMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYS 207
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
L+ VY + GL+ A + + +L+G ++ ++ L + + + ++ + + + A
Sbjct: 208 LLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQ-MEA 266
Query: 254 YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Y + V L +D + G + A N + L +G P
Sbjct: 267 YGC----RADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCP 306
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/366 (20%), Positives = 146/366 (39%), Gaps = 59/366 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR G V YN ++ + G + ++ + G D +Y T L
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 262
Query: 61 ASDHEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG--- 116
A E ++++ MME N + V + + + + G++++A+ +L EQ+ G
Sbjct: 263 AKRWEDVEELFAEMMEK--NCMPNEVTFDMLVRFFCRGGMVERAIQVL----EQMSGHGC 316
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLL 165
A + N+++ K G+ DD A + LNN Y V+ L
Sbjct: 317 AANTTLCNIVINTICKQGRVDD----------AFQFLNNMGSYGCSPDTISYTTVLKGLC 366
Query: 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225
+ + E A+++ +E + + N I + C+ GL+E+A L+ G E+++
Sbjct: 367 RAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIV 426
Query: 226 SWYYLATGYRQNSQIHKAVE-----AMKKVLAAYQTLVK--------------------- 259
++ L G+ ++ A+E K Y TL+
Sbjct: 427 TYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK 486
Query: 260 -WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLDNVQNGKSNLET 317
P+V + + +F +G + A +E + + G P + + LLD + N ++ E
Sbjct: 487 DCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEA 546
Query: 318 LRELYG 323
L L+G
Sbjct: 547 LELLHG 552
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 15/243 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ML Y G + L M +GI D YT+ + AYA+ + I M
Sbjct: 365 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 424
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
D V D V Y TV ++G +D A+ + +Q A AYN ++ + +G
Sbjct: 425 -DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYAYNCLIQGFCTHGS 482
Query: 136 KDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
+L+ EL + ++NNG + ++I++L KL + A+ IF+ + L D
Sbjct: 483 ---LLKAKELISE---IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 536
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ N L+D YC G +EKA + + G E +V + L GY + +I + + +
Sbjct: 537 AVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFR 596
Query: 249 KVL 251
++L
Sbjct: 597 EML 599
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 10/233 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNF-EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
GL ++ N +L+ + + E LD L+H E G D ++Y L + D
Sbjct: 144 GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 203
Query: 67 IDKILTMME-----ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D +L MM PNV V Y TV +G+ K G ++KA + K+ ++ + +
Sbjct: 204 ADDLLRMMAEGGAVCSPNV----VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVT 259
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+V+ L + ++ K V N Y N+I + A ++F+E
Sbjct: 260 YNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 319
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ D + L+ C+ G +++A ++ + +KG+ V S+ + GY
Sbjct: 320 RHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY 372
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 138/346 (39%), Gaps = 54/346 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY-------CT-- 53
+MRD G+ V Y +++ + G + ++M + G+ D+Y Y CT
Sbjct: 422 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 481
Query: 54 -----------------RLSAYADASDHEGIDKILTMMEAD------PNVAL--DWVIYA 88
L +S + K+ +M+A NV L D V+Y
Sbjct: 482 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYN 541
Query: 89 TVGNGYGKVGLLDKAL----AMLKKS-EEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW 143
+ +GY VG ++KAL AM+ E + G Y ++ Y K G+ D+ L ++
Sbjct: 542 MLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG------YGTLVNGYCKIGRIDEGLSLF 595
Query: 144 -ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
E+ ++ +K Y +I L + A+ F E + D N ++ +N
Sbjct: 596 REMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKN 655
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
++A L + +I++ + + G Q ++ +A K L A + + P
Sbjct: 656 RCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA-----KDLFASISRSRLVP 710
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV 308
SV + + + EG + AE+ + + G P +LL++V
Sbjct: 711 SVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP---NSRLLNHV 753
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 36/247 (14%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ V YNS++ K +K ++ + +M + + +TY + Y+
Sbjct: 246 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 305
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA------LAMLKKSEE--- 112
+ ++ M ++ D V + + K G + +A +AM ++ +
Sbjct: 306 GQWKEAVRVFKEMRRH-SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 364
Query: 113 --------QIKGAKVNS-----------------AYNVILTLYGKYGKKDDVLRIW-ELY 146
KG V+ +NV++ Y G D + I+ E+
Sbjct: 365 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 424
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
VK YR VI++L ++ ++ A + F + Q + D N LI +C +G L
Sbjct: 425 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 484
Query: 207 KAENLVN 213
KA+ L++
Sbjct: 485 KAKELIS 491
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 124/289 (42%), Gaps = 20/289 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS---DHEGIDKILT 72
YN +++ + G +K EME NG + TY T + AY + G+ K ++
Sbjct: 13 YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMS 72
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYG 131
PN+ + Y + NG + G + +A +L+ E KG + YN +L Y
Sbjct: 73 SKGMQPNL----ISYNVIINGLCREGSMKEAWEILE--EMGYKGFTPDEVTYNTLLNGYC 126
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
K G L I E+ + V Y +I+S+ K +L A + F++ + L + R
Sbjct: 127 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 186
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
LID + R GLL +A ++N G V ++ G H +E M++
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG-------HCVLERMEEA 239
Query: 251 LAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
L Q +V+ P V S + + F +G++ A + + +KG P
Sbjct: 240 LGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 288
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/324 (19%), Positives = 136/324 (41%), Gaps = 12/324 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++ M G+ + YN ++ + G+ ++ ++ EM G T D TY T L+ Y
Sbjct: 68 LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 127
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + H+ + ++ V+ V Y + N K L++A+ + +I+G +
Sbjct: 128 EGNFHQAL--VIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM--RIRGLRP 183
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N Y ++ + + G ++ RI E+ + Y I L+ +E A +
Sbjct: 184 NERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVV 243
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + L D + +I +CR G L++A + KG ++ L G +
Sbjct: 244 QEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEM 303
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ +A + +++L + P + ++ + EGD+ A + + + KGF+P
Sbjct: 304 RRLTEACDLSQEMLD-----MGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP 358
Query: 298 TDLQDKLLDNVQNGKSNLETLREL 321
+ +L N N ++ + L
Sbjct: 359 DAVTYSVLINGLNKQARTREAKRL 382
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/342 (20%), Positives = 136/342 (39%), Gaps = 46/342 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G V YN++L Y K GNF + + EM NG++ TY +++
Sbjct: 103 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + + M + + Y T+ +G+ + GLL++A +L + E V
Sbjct: 163 ARNLNRAMEFFDQMRIR-GLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 221
Query: 121 S----------------------------------AYNVILTLYGKYGKKDDVLRI-WEL 145
+ +Y+ I++ + + G+ D ++ E+
Sbjct: 222 TYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 281
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+K V Y ++I L ++ L A + +E L D LI+ YC G L
Sbjct: 282 VEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDL 341
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL--------AAYQTL 257
KA +L + KG ++ L G + ++ +A + K++ Y TL
Sbjct: 342 NKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTL 401
Query: 258 VKWKPSVE--SLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ ++E S+ A + F +G + A+ E + ++ P
Sbjct: 402 IENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKP 443
>gi|388490914|gb|AFK33523.1| unknown [Lotus japonicus]
Length = 358
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q+++D L+ + YN M+ LY G EK+ S++ E+++ ++ D +TY +S+ A
Sbjct: 175 QRIKDSNLSFDALTYNEMMTLYMSVGQVEKVPSVVEELKQRNVSPDIFTYNLWISSCAAT 234
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA-MLKKSEEQIKGAKVN 120
+ + + +IL M + W Y + N Y LD + + L ++E++I ++
Sbjct: 235 LNIDEVRRILDEMSHGADSNESWTRYLNLANVYVTASRLDNSSSNSLAETEKRITQSQWI 294
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKL 167
+ Y+ ++ LY G KD + +IW L K++N Y +IS+ L L
Sbjct: 295 T-YDFLIILYAGLGSKDKLDQIWNSLRMTKQKMINRNYSCIISAYLML 341
>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1280
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 131/293 (44%), Gaps = 14/293 (4%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DASDHEGI 67
+ T V ++S++ + G F+ L +EM I D YT+ + A + E
Sbjct: 224 IPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAK 283
Query: 68 DKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+ I MM+ +P V V Y T+ +GY V + KA +L +++ A + +YN+
Sbjct: 284 NVIAVMMKEGVEPTV----VTYNTLMDGYCLVNEVGKAKHVLSIIS-RMRVAPNSRSYNI 338
Query: 126 ILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ + K D+ L ++ E+ + + Y ++I L K + A ++ +E +
Sbjct: 339 MINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNC 398
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ D N LIDV+C+N ++KA LV K G + ++ ++ L G + Q+ A
Sbjct: 399 IPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQ 458
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + +L + W ++ C + DE AE + + D G IP
Sbjct: 459 DVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDE-----AEVLLSKMEDNGIIP 506
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 29/266 (10%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGN-FEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+MR + + V +N +L KT N + + SL +ME G+ D +T ++ Y
Sbjct: 56 RMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHL 115
Query: 62 SD----HEGIDKILTM---MEADPNVAL-------------DWVIYATVGNGYGKVGLLD 101
KIL M + N AL + V Y + NG K+G
Sbjct: 116 GQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTR 175
Query: 102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNGY 157
AL +L+ QI+G VN+ + T+ K V + LY K + +
Sbjct: 176 AALQVLR----QIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTF 231
Query: 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
++I + + A ++F E + + D N L+D C+ G +++A+N++
Sbjct: 232 SSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMK 291
Query: 218 KGREIHVKSWYYLATGYRQNSQIHKA 243
+G E V ++ L GY +++ KA
Sbjct: 292 EGVEPTVVTYNTLMDGYCLVNEVGKA 317
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 8/221 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR +A + YN M+ + K ++ L HEM GI + TY + +
Sbjct: 324 ISRMR---VAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCK 380
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A +++ M + + D V Y ++ + + K +DKA+A++KK +E G + N
Sbjct: 381 AGRIPYAWELVDEMHNN-CIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEH--GIQPN 437
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN+++ K G+ + +++ L K V Y +I+ L K + AE +
Sbjct: 438 MCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLS 497
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ E + D +I EKA+ L+ +KG
Sbjct: 498 KMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKG 538
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 138/296 (46%), Gaps = 14/296 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ +Y S++ K GN ++ L EM E + + YTY ++ A + +
Sbjct: 288 GIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAA 347
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ ++ M++ V ++ VI+ T+ +GY K G++D+AL + ++ Q KG ++++ N+I
Sbjct: 348 EMMVNDMQSK-GVDVNRVIFNTLMDGYCKKGMIDEALRL--QNIMQQKGFEIDAFTCNII 404
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ + + ++++ R+ + ++ V + +I K + A ++F+ E +
Sbjct: 405 ASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGK 464
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
N I+ YC+ G +E+A L+N + +G ++ L G R + + +A+E
Sbjct: 465 APSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALE 524
Query: 246 AMKKV--LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
++ L + +V + + L+ +G A + +N +G +P D
Sbjct: 525 LFNEMPQLGLNRNVVTYTVIISGLSK-------DGRADEAFKLYDEMNKEGIVPDD 573
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 146/303 (48%), Gaps = 16/303 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G+ + +++ K G + +LM E+ G TY T L+ Y +
Sbjct: 176 LRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIE 235
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G+++IL++ME + V + Y + Y + +++A + E KG + +
Sbjct: 236 IKDVGGVNEILSLMEKNV-VDYNVTTYTMLIEWYSRSSKIEEAEKLF--DEMLKKGIEPD 292
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAV--KVLNNGYR--NVISSLLKLDDLESAEK 175
Y I+ K+G ++ R + L+ + +++ N Y +I+ K ++++AE
Sbjct: 293 VYIYTSIINWNCKFG---NMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEM 349
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ + +S+ + + I N L+D YC+ G++++A L N + KG EI + +A+G+
Sbjct: 350 MVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFC 409
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ ++ EA + +L + V P+V S + +D + E + A +++ KG
Sbjct: 410 RS---NRREEAKRLLLTMEERGV--APNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGK 464
Query: 296 IPT 298
P+
Sbjct: 465 APS 467
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G A + V YN+ ++ Y K G E+ L++EM+E G+ D YTY ++ D
Sbjct: 459 MEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTY----TSLIDGER 514
Query: 64 HEG-IDKILTMMEADPNVALDW--VIYATVGNGYGKVGLLDKALAM 106
G +D+ L + P + L+ V Y + +G K G D+A +
Sbjct: 515 ASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKL 560
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 12/213 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ V+YN + + K G + HEM+ G+ D TY T +
Sbjct: 261 LDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCK 320
Query: 61 ASDHEGIDKILTMMEA-DPNVALDWV-IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A +D+ + + E D N ++ V Y T+ GYG G D+A ++L E Q +
Sbjct: 321 ARR---LDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLL---ERQKRKGC 374
Query: 119 VNS--AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ S AYN ILT G+ GK ++ LRI E+ + A L Y +I L K +LE+A K
Sbjct: 375 IPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTT-YNILIDMLCKAGELEAALK 433
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ + + L + N +ID C+ L++A
Sbjct: 434 VQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEA 466
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 11/247 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM D VVY S+++ ++K G E + EM G + D L++Y D
Sbjct: 506 EKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLML----LNSYMDC 561
Query: 62 SDHEG-IDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
G ++K + E L D Y+ + +G K G + + + +EQ G
Sbjct: 562 VFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQ--GLH 619
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++ AYN ++ + K GK D ++ E K K ++ Y +V+ L K+D L+ A +
Sbjct: 620 LDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYML 679
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FEE +S + + I + LID + + G +++A ++ KG + +W L +
Sbjct: 680 FEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVK 739
Query: 237 NSQIHKA 243
+I +A
Sbjct: 740 AEEIDEA 746
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 53/329 (16%)
Query: 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDK 69
A YN ++ + K G E + M+E G+ + T + A +
Sbjct: 409 APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACS 468
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--SEEQIKGAKVNSAYNVIL 127
I ++ + D + ++ +G G+ G +D A ++ +K +QI V Y ++
Sbjct: 469 IFLGLDHKV-CSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVV---YTSLI 524
Query: 128 TLYGKYGKKDDVLRIW-ELYKKAVK---VLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+ K G+K+D +I+ E+ + +L N Y + + K ++E +FEE ++Q
Sbjct: 525 QNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCV---FKAGEVEKGRALFEEIKAQ 581
Query: 184 ALCYDTR-----------------------------------IPNFLIDVYCRNGLLEKA 208
L D R N +ID +C++G ++KA
Sbjct: 582 GLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKA 641
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268
L+ K KG + V ++ + G + ++ +A ++ + L +V +
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDL-----NVVIYS 696
Query: 269 ACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +D F G I A +E L KG P
Sbjct: 697 SLIDGFGKVGRIDEAYLILEELMQKGLTP 725
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 98/244 (40%), Gaps = 9/244 (3%)
Query: 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA---SDHEG 66
A VYN+ L + +T N + L+ ++ EM G + ++++ + + G
Sbjct: 130 AHCPEVYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFG 189
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126
+ +++ + P + Y T+ D L + + +E A V+ + +
Sbjct: 190 VIEMMRKFKFRPA----FSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVH-LFTTL 244
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV-ISSLLKLDDLESAEKIFEEWESQAL 185
+ ++ + G+ D L + + K + NV I K+ ++ A K F E ++Q L
Sbjct: 245 VRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGL 304
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D LI V C+ L++A L L V ++ + GY + +A
Sbjct: 305 VPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYS 364
Query: 246 AMKK 249
+++
Sbjct: 365 LLER 368
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 135/308 (43%), Gaps = 8/308 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M G+ VVY+S++ + G ++ EME GI+ D YTY + + +
Sbjct: 169 FSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSR 228
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + + L +M D + D + + +G K G + +A +L+ + K +
Sbjct: 229 AGLWKEVTWFLNLM-VDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDIL 287
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN ++ G+ +D +++E L + +K+ Y +I+ K ++ A ++FEE
Sbjct: 288 T-YNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEE 346
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L T N LI C++G + A+ L + G+ + + ++ L G +N
Sbjct: 347 MRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGH 406
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A++ + + KP++E + LD G + A + ++ G P
Sbjct: 407 LEEAIDLFQSIKKTEH-----KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDT 461
Query: 300 LQDKLLDN 307
+ +L N
Sbjct: 462 IAYNILIN 469
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++MR GL +TV YN+++ ++G L EM+ G TYC L
Sbjct: 344 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCK 403
Query: 60 DASDHEGIDKILTM--MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-G 116
+ E ID ++ E PN+ +++ + +G + G L++A K+ +E K G
Sbjct: 404 NGHLEEAIDLFQSIKKTEHKPNIE----VFSILLDGMCRAGKLEEA---WKQFDEISKNG 456
Query: 117 AKVNS-AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ ++ AYN+++ G + ++ +W++ +K + + +I +LLK +++ A
Sbjct: 457 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAI 516
Query: 175 KIFEEWESQALCYDTRIPNFLI 196
++ EE ++ D + + L+
Sbjct: 517 QLLEEMRNRNFSPDEAVTSMLL 538
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 112/270 (41%), Gaps = 16/270 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YN+++ G E L + + GI + ++Y ++ Y + ID+ +
Sbjct: 287 LTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCK---DQKIDEAFRL 343
Query: 74 MEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLY 130
E + V Y T+ + G + A + E Q G + S Y V+L
Sbjct: 344 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLF--VEMQTCGQFLKLSTYCVLLDGL 401
Query: 131 GKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K G ++ + +++ KK N + ++ + + LE A K F+E L DT
Sbjct: 402 CKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDT 461
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N LI+ C G+L +A L+ + KG ++ + + ++IH+A++ +++
Sbjct: 462 IAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEE 521
Query: 250 VLAAYQTLVKWKP--SVESLAACLDYFKDE 277
+ + P +V S+ CL F +
Sbjct: 522 MRNR-----NFSPDEAVTSMLLCLASFDPQ 546
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 13/180 (7%)
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y +++ K K +++ E K K Y +I SL K A +F E
Sbjct: 114 TYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMI 173
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D + + L+D CR G L++A L ++++GR I + Y NS IH
Sbjct: 174 GAGILPDVVVYSSLMDGLCRFGRLKEA--LEFFKEMEGRGISADVYTY-------NSLIH 224
Query: 242 KAVEA--MKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A K+V +V + P + +D EG +G A+ +EL++ KG P
Sbjct: 225 GLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEP 284
>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
[Vitis vinifera]
gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 12/137 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T YN +L + +G ++ ++ M + T D +Y T LSAY +
Sbjct: 338 FEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVN 397
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKG 116
ASD EG +K ++ D PNV V Y T+ GY K+ L+K M++K EE Q+ G
Sbjct: 398 ASDMEGAEKFFRRLKQDGFEPNV----VTYGTLIKGYAKISNLEK---MMEKYEEMQVHG 450
Query: 117 AKVNSA-YNVILTLYGK 132
K N A Y ++ YGK
Sbjct: 451 IKANQAIYTAMMDAYGK 467
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 20/238 (8%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+++ M+ +Y K GN+EK + M E G+ TY + +S ++++ + K M
Sbjct: 250 MFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTYNSLMSF---ETNYKEVSKTYDQM 306
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA--KVNSAYNVILTLYGK 132
+ + D V YA + N YGK ++ALA+ EE + + AYN++L +
Sbjct: 307 Q-RAGLRPDVVSYALLINAYGKARREEEALAVF---EEMLDAGVRPTHKAYNILLDAFAI 362
Query: 133 YGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE-----WESQALC 186
G D +++ ++ + Y ++S+ + D+E AEK F +E +
Sbjct: 363 SGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVT 422
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
Y T LI Y + LEK ++ G + + + + Y +N AV
Sbjct: 423 YGT-----LIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKNKDFGSAV 475
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR+ G+ ++TV YNS++ N++++ +M+ G+ D +Y ++AY A
Sbjct: 274 MRERGVPQSTVTYNSLMSF---ETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARR 330
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
E + M D V Y + + + G++D+A + K + S Y
Sbjct: 331 EEEALAVFEEM-LDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICS-Y 388
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWES 182
+L+ Y + + + K+ N Y +I K+ +LE + +EE +
Sbjct: 389 TTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQV 448
Query: 183 QALCYDTRIPNFLIDVYCRN 202
+ + I ++D Y +N
Sbjct: 449 HGIKANQAIYTAMMDAYGKN 468
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 133/295 (45%), Gaps = 18/295 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEM-----EENGITYDRYTYCTRLSAYADAS 62
G+ Y S++ Y +G ++ + ++ E +G+ D TYCT L YA
Sbjct: 261 GVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKG 320
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
G+ +L +M + + D +Y + Y K G +D+A+ + K +Q G ++
Sbjct: 321 ALVGMHALLDLMVRN-GIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQ--GLNPDAV 377
Query: 123 -YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++ + K G+ +D + +E + + + N Y ++I L + E AE++ E
Sbjct: 378 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 437
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ +C +T N +ID +C+ G + ++E L + G + + ++ L GY ++
Sbjct: 438 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 497
Query: 241 HKAVEAMKKVLAA--------YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+A++ + +++ Y+TL+ + + L FK+ G + + I
Sbjct: 498 DEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDII 552
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 47/230 (20%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G+ T+ +NS++ + K G + + L M G+ D TY T + Y A
Sbjct: 436 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 495
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE------- 112
+ K+L+ M + PN V Y T+ NGY K+ + AL + K+ E
Sbjct: 496 KMDEAMKLLSGMVSVGLKPNT----VTYRTLINGYCKISRMGDALVLFKEMESSGVSPDI 551
Query: 113 -----------QIK---------------GAKVN-SAYNVILTLYGKYGKKDDVLRIWE- 144
Q + G ++ S YN+IL K DD LR+++
Sbjct: 552 ITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQN 611
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
L +K+ + +I +LLK+ A+ +F + S L +PN+
Sbjct: 612 LCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGL-----VPNY 656
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 101/229 (44%), Gaps = 5/229 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D GL+ +VYNS++ +E+ + L+ EM + GI + + + + ++
Sbjct: 399 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 458
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+K+ +M V D + Y+T+ +GY G +D+A+ +L S G K N
Sbjct: 459 EGRVIESEKLFDLM-VRIGVKPDIITYSTLIDGYCLAGKMDEAMKLL--SGMVSVGLKPN 515
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ Y K + D L ++ E+ V Y ++ L + +A++++
Sbjct: 516 TVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 575
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+ N ++ C+N L + A + + L ++ +++
Sbjct: 576 RITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTF 624
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 60/325 (18%), Positives = 131/325 (40%), Gaps = 12/325 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
KMR GL V Y +++ + K+G E +M + G++ Y + +
Sbjct: 364 FSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCT 423
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKV 119
+ E ++++ M D + L+ + + ++ + + K G + + K + ++ G K
Sbjct: 424 CNKWERAEELILEM-LDRGICLNTIFFNSIIDSHCKEG---RVIESEKLFDLMVRIGVKP 479
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ Y+ ++ Y GK D+ +++ + +K YR +I+ K+ + A +F
Sbjct: 480 DIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLF 539
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E ES + D N ++ + A+ L G +I + ++ + G +N
Sbjct: 540 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 599
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A+ + + L+ K + +D G G A++ + G +P
Sbjct: 600 KLTDDALRMFQNL-----CLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVP 654
Query: 298 TDLQDKLLDNVQNGKSNLETLRELY 322
+L+ G+ LE L +L+
Sbjct: 655 NYWTYRLMAENIIGQGLLEELDQLF 679
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 132/299 (44%), Gaps = 14/299 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y++++ Y G +K LM +M+ G+ +RYTY + + +K+L
Sbjct: 293 VVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLR 352
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M + + D V+Y T+ +G+ K+G + A K +++ K++ Y TL
Sbjct: 353 EMMSQ-KIIPDNVVYTTLIHGFFKLGHVRTA----NKWFDEMLSKKISPDYITYTTLIQG 407
Query: 133 YGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
+G+ V+ E+ + +K Y +I K ++ +A + E + +
Sbjct: 408 FGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPN 467
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
LID C++G L+ A L++ + KG +++V + + G + I +A++ MK
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMK 527
Query: 249 KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDN 307
++ A P + +D + GDI A ++ + D+G PT + +L N
Sbjct: 528 EMEVA-----GIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN 581
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 36/248 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR GL +YNSM+ K GN E+ LM EME GI D TY T + AY
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL---DKALA-MLKKS------ 110
D + K+L M D + V + + NG+ +G+L D+ L ML+K
Sbjct: 551 LGDIDKAHKLLQEM-LDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAI 609
Query: 111 --EEQIKGAKVNSAYNVILTLYGK-------------------YGKKDDVLRIWELYKKA 149
+K + ++ N +Y + + K ++ W LYK+
Sbjct: 610 TYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEM 669
Query: 150 VK----VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
++ Y +I K A ++FEE L D I NF +D+ G +
Sbjct: 670 IEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDV 729
Query: 206 EKAENLVN 213
E NL +
Sbjct: 730 EITLNLCD 737
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 19/243 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + VVY +++ ++K G+ + EM I+ D TY T + +
Sbjct: 351 LREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQ 410
Query: 61 ASD--------HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112
HE I + + D V Y T+ + Y K G + A + L
Sbjct: 411 GGKVIEPQNLFHEMISR---------GLKPDEVTYTTLIDVYCKAGEMVNAFS-LHNEMV 460
Query: 113 QIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLE 171
Q+ Y ++ K+G+ D + E+ KK +++ Y ++++ + K ++E
Sbjct: 461 QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIE 520
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A K+ +E E + D +ID YCR G ++KA L+ +G + V ++ L
Sbjct: 521 QAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580
Query: 232 TGY 234
G+
Sbjct: 581 NGF 583
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 114/253 (45%), Gaps = 11/253 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M +G+ V Y +++ K G + + L+ EM + G+ + Y + ++ A
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E K++ ME DP D + Y TV + Y ++G +DKA +L++ ++ V
Sbjct: 518 NIEQAIKLMKEMEVAGIDP----DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTV 573
Query: 120 NSAYNVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ +NV++ + G +D R+ W L K V Y ++ + + + KI+
Sbjct: 574 VT-FNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAIT-YNTLMKQHCIRNSMNTTTKIY 631
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ +Q + D+ N LI +C+ L++A L KG V S+ L + +
Sbjct: 632 KRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKK 691
Query: 238 SQIHKAVEAMKKV 250
+ +A E +++
Sbjct: 692 RKFXEARELFEEM 704
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 138/296 (46%), Gaps = 14/296 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ +Y S++ K GN ++ L EM E + + YTY ++ A + +
Sbjct: 292 GIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAA 351
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ ++ M++ V ++ VI+ T+ +GY K G++D+AL + ++ Q KG ++++ N+I
Sbjct: 352 EMMVNDMQSK-GVDVNRVIFNTLMDGYCKKGMIDEALRL--QNIMQQKGFEIDAFTCNII 408
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ + + ++++ R+ + ++ V + +I K + A ++F+ E +
Sbjct: 409 ASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGK 468
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
N I+ YC+ G +E+A L+N + +G ++ L G R + + +A+E
Sbjct: 469 APSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALE 528
Query: 246 AMKKV--LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
++ L + +V + + L+ +G A + +N +G +P D
Sbjct: 529 LFNEMPQLGLNRNVVTYTVIISGLS-------KDGRADEAFKLYDEMNKEGIVPDD 577
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 146/303 (48%), Gaps = 16/303 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G+ + +++ K G + +LM E+ G TY T L+ Y +
Sbjct: 180 LRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIE 239
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G+++IL++ME + V + Y + Y + +++A + E KG + +
Sbjct: 240 IKDVGGVNEILSLMEKNV-VDYNVTTYTMLIEWYSRSSKIEEAEKLF--DEMLKKGIEPD 296
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAV--KVLNNGYR--NVISSLLKLDDLESAEK 175
Y I+ K+G ++ R + L+ + +++ N Y +I+ K ++++AE
Sbjct: 297 VYIYTSIINWNCKFG---NMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEM 353
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ + +S+ + + I N L+D YC+ G++++A L N + KG EI + +A+G+
Sbjct: 354 MVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFC 413
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ ++ EA + +L + V P+V S + +D + E + A +++ KG
Sbjct: 414 RS---NRREEAKRLLLTMEERGV--APNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGK 468
Query: 296 IPT 298
P+
Sbjct: 469 APS 471
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G A + V YN+ ++ Y K G E+ L++EM+E G+ D YTY ++ D
Sbjct: 463 MEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTY----TSLIDGER 518
Query: 64 HEG-IDKILTMMEADPNVALDW--VIYATVGNGYGKVGLLDKALAM 106
G +D+ L + P + L+ V Y + +G K G D+A +
Sbjct: 519 ASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKL 564
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 7/246 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRL-SAYA 59
+ +M G+ + YNS++ G + L ME+NG D TY + S Y
Sbjct: 256 LSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYK 315
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D ++ D + M+ D + D V Y T+ +G +G L++A+ + KK E+ KG K
Sbjct: 316 DRLVNDAADFLSEMV--DQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQ--KGCKP 371
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ AYN I+ K +D + E+ + + Y ++ L L+ A ++F
Sbjct: 372 DVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLF 431
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + + +T + L+D C+ G++ +A + KG E ++ ++ L GY
Sbjct: 432 KEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLR 491
Query: 238 SQIHKA 243
++++A
Sbjct: 492 CKMNEA 497
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 126/288 (43%), Gaps = 12/288 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DASDHEGIDKIL 71
+ YN+++ +GN + +ME+NG + TY T + + D ++ +D +
Sbjct: 198 VISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLS 257
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVIL-TL 129
M+ + D + Y ++ +G +G L++A + K+ E+ G K + YN+I+ +L
Sbjct: 258 EMVGR--GIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQN--GCKPDVVTYNIIIDSL 313
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
Y D + E+ + + Y ++ L L L A ++F++ E + D
Sbjct: 314 YKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDV 373
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N +ID C++ L+ A ++ +G + ++ + G+ Q+ +A + K+
Sbjct: 374 VAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKE 433
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ P+ + + +D EG + A E + +KG P
Sbjct: 434 MVGR-----NVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEP 476
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 113/256 (44%), Gaps = 7/256 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+ +M D G+ V Y ++L G + L +ME+ G D Y T + +
Sbjct: 326 LSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCK 385
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D ++ ++ + M+ D + + V Y+T+ +G+ +G LD+A + K E +
Sbjct: 386 DRLVNDAMEFLSEMV--DRGIPPNAVTYSTILHGFCNLGQLDEATQLFK--EMVGRNVMP 441
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N+ +++++ + G + ++E + +K V+ Y +++ + A K+F
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVF 501
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + D N LI+ YC + ++KA+ L+ +K + ++ + G
Sbjct: 502 EIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYV 561
Query: 238 SQIHKAVEAMKKVLAA 253
++ A E KK+ ++
Sbjct: 562 GRLLDAQELFKKMCSS 577
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 132/299 (44%), Gaps = 14/299 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y++++ Y G +K LM +M+ G+ +RYTY + + +K+L
Sbjct: 293 VVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLR 352
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M + + D V+Y T+ +G+ K+G + A K +++ K++ Y TL
Sbjct: 353 EMMSQ-KIIPDNVVYTTLIHGFFKLGHVRTA----NKWFDEMLSKKISPDYITYTTLIQG 407
Query: 133 YGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
+G+ V+ E+ + +K Y +I K ++ +A + E + +
Sbjct: 408 FGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPN 467
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
LID C++G L+ A L++ + KG +++V + + G + I +A++ MK
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMK 527
Query: 249 KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDN 307
++ A P + +D + GDI A ++ + D+G PT + +L N
Sbjct: 528 EMEVA-----GIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN 581
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 101/248 (40%), Gaps = 36/248 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR GL +YNSM+ K GN E+ LM EME GI D TY T + AY
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL---DKALA-MLKKS------ 110
D + K+L M D + V + + NG+ +G+L D+ L ML+K
Sbjct: 551 LGDIDKAHKLLQEM-LDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAI 609
Query: 111 --EEQIKGAKVNSAYNVILTLYGK-------------------YGKKDDVLRIWELYKKA 149
+K + ++ N +Y + + K ++ W LYK+
Sbjct: 610 TYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEM 669
Query: 150 VK----VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
++ Y +I K + A ++FEE L D I NF +D+ G +
Sbjct: 670 IEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDV 729
Query: 206 EKAENLVN 213
E NL +
Sbjct: 730 EITLNLCD 737
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 114/253 (45%), Gaps = 11/253 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M +G+ V Y +++ K G + + L+ EM + G+ + Y + ++ A
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E K++ ME DP D + Y TV + Y ++G +DKA +L++ ++ V
Sbjct: 518 NIEQAIKLMKEMEVAGIDP----DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTV 573
Query: 120 NSAYNVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+NV++ + G +D R+ W L K V Y ++ + + + KI+
Sbjct: 574 -VTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAIT-YNTLMKQHCIRNSMNTTTKIY 631
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ +Q + D+ N LI +C+ L++A L KG V S+ L + +
Sbjct: 632 KRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKK 691
Query: 238 SQIHKAVEAMKKV 250
+I +A E +++
Sbjct: 692 KKILEARELFEEM 704
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 19/243 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + VVY +++ ++K G+ + EM I+ D TY T + +
Sbjct: 351 LREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQ 410
Query: 61 ASD--------HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112
HE I + + D V Y T+ + Y K G + A + L
Sbjct: 411 GGKVIEPQNLFHEMISR---------GLKPDEVTYTTLIDVYCKAGEMVNAFS-LHNEMV 460
Query: 113 QIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLE 171
Q+ Y ++ K+G+ D + E+ KK +++ Y ++++ + K ++E
Sbjct: 461 QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIE 520
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A K+ +E E + D +ID YCR G ++KA L+ +G + V ++ L
Sbjct: 521 QAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580
Query: 232 TGY 234
G+
Sbjct: 581 NGF 583
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 122/252 (48%), Gaps = 5/252 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M ++G + N+++ +G + L+ +M E G + TY L+
Sbjct: 279 VDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCK 338
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L ME + N+ LD V Y+ + +G K G LD A + +E ++KG N
Sbjct: 339 SGQTALAMELLRKME-ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF--NEMEMKGITTN 395
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN+++ + G+ DD ++ ++ K+ + + +I S +K L AE++ +
Sbjct: 396 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 455
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + DT LID +C+ L+KA +V+ KG + +++++ L GY + +
Sbjct: 456 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 515
Query: 239 QIHKAVEAMKKV 250
+I +E +K+
Sbjct: 516 RIDDGLELFRKM 527
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 133/333 (39%), Gaps = 43/333 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM + + V Y+ ++ K G+ + +L +EME GIT + TY + + +
Sbjct: 349 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 408
Query: 61 ASDHEGIDKILTMM---EADPNV-------------------------------ALDWVI 86
A + K+L M + +PNV A D +
Sbjct: 409 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 468
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIW-E 144
Y ++ +G+ K LDKA M+ KG N +N+++ Y K + DD L ++ +
Sbjct: 469 YTSLIDGFCKENHLDKANQMVDLMVS--KGCDPNIRTFNILINGYCKANRIDDGLELFRK 526
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ + V Y +I +L L A+++F+E S+ + + L+D C NG
Sbjct: 527 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 586
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
EKA + + E+ + + + G S++ A + L L KP V
Sbjct: 587 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD-----LFCSLPLKGVKPGV 641
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ + +G + AE + + G P
Sbjct: 642 KTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAP 674
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 134/303 (44%), Gaps = 21/303 (6%)
Query: 4 MRDLGLAR---TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
RD+ +R T + ++ + KT ++ + +L +ME GI ++ YT ++ +
Sbjct: 174 FRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCR 233
Query: 61 ASD----HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ KI+ + +PN + ++T+ NG G + +AL ++ + E
Sbjct: 234 CRKLCLAFSAMGKIIK-LGYEPNT----ITFSTLINGLCLEGRVSEALELVDRMVEMGHK 288
Query: 117 AKVNSAYNVI--LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ + ++ L L GK + + +L I ++ + + Y V++ + K A
Sbjct: 289 PDLITINTLVNGLCLSGK--EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 346
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ + E + + D + +ID C++G L+ A NL N ++KG ++ ++ L G+
Sbjct: 347 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGF 406
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ + ++ ++ K P+V + + +D F EG + AE + + +G
Sbjct: 407 CNAGRWDDGAKLLRDMIKR-----KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 461
Query: 295 FIP 297
P
Sbjct: 462 IAP 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 115/283 (40%), Gaps = 14/283 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + G V Y +L + K+G L+ +MEE I D Y +
Sbjct: 314 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 373
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ME + + + Y + G+ G D +L+ + IK K+N
Sbjct: 374 HGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGAKLLR---DMIK-RKIN 428
Query: 121 S---AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++V++ + K GK + + E+ + + Y ++I K + L+ A ++
Sbjct: 429 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 488
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ S+ + R N LI+ YC+ ++ L L+G ++ L G+ +
Sbjct: 489 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 548
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279
+++ A E +++++ K P++ + LD D G+
Sbjct: 549 LGKLNVAKELFQEMVSR-----KVPPNIVTYKILLDGLCDNGE 586
>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 932
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 27/258 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE----------NGITYDRYT 50
++KM++ G+ T V Y+ ++ + K GN + D E +E GI Y
Sbjct: 342 VRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQ 401
Query: 51 YCT--RLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK 108
C R A + +GID + IY T+ +GY +G +K L +
Sbjct: 402 ICNMDRAEALVREMEEQGIDAPID-------------IYHTMMDGYTMIGNEEKCLIVFD 448
Query: 109 KSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKL 167
+ +E V S Y ++ LY K GK L I ++ K +K Y +I+ LKL
Sbjct: 449 RLKECGFFPSVIS-YGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKL 507
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
D +A +FE++ L D + N +I +C G +++A +V + + +++
Sbjct: 508 KDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTF 567
Query: 228 YYLATGYRQNSQIHKAVE 245
+ G+ + ++ +A+E
Sbjct: 568 LPIIHGFARAGEMRRALE 585
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T YN+++ + K +++ EM G+ + +TY T + YA D
Sbjct: 590 MRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGD 649
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
E + T++ + + +D Y + K G + ALA+ K E K N+
Sbjct: 650 TEKAFQYFTVLRNE-GLEIDVYTYEALLKSCCKSGRMQSALAVTK--EMSAKNIPRNTFV 706
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEK 175
YN+++ + + G +WE ++ G Y + I++ K D++ A +
Sbjct: 707 YNILIDGWARRGD------VWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATE 760
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
I +E E+ + + + LI+ + R + EKA + KL G + ++ L T
Sbjct: 761 IIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVT 817
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 10/131 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R T VYN ++ + + G+ + LM +M + G+ D +TY + ++A A
Sbjct: 693 KEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKA 752
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + +I+ MEA PN+ Y T+ NG+ + + +KAL+ + E ++ G K
Sbjct: 753 GDMQKATEIIQEMEASGIKPNLK----TYTTLINGWARASMPEKALSCFE--EMKLAGFK 806
Query: 119 VNSA-YNVILT 128
+ A Y+ ++T
Sbjct: 807 PDKAVYHCLVT 817
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 111/264 (42%), Gaps = 19/264 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V+YN+++ + GN ++ ++ +M++ T+ + +A A +
Sbjct: 524 GLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRA 583
Query: 68 DKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AY 123
+I MM P V Y + G + + KA+A+L E + G N Y
Sbjct: 584 LEIFDMMRRSGCIPTVH----TYNALILGLVEKRQMTKAVAIL--DEMNVAGVGPNEHTY 637
Query: 124 NVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
++ Y G + + + + + + +++ Y ++ S K ++SA + +E +
Sbjct: 638 TTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSA 697
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + +T + N LID + R G + +A +L+ + +G + ++ + + K
Sbjct: 698 KNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQK 757
Query: 243 AVE--------AMKKVLAAYQTLV 258
A E +K L Y TL+
Sbjct: 758 ATEIIQEMEASGIKPNLKTYTTLI 781
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+MR GL Y S + K G+ +K ++ EME +GI + TY T ++ +A
Sbjct: 727 MQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWAR 786
Query: 61 ASDHE 65
AS E
Sbjct: 787 ASMPE 791
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 10/224 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ GL+ V YN++L + + G + +L+ M+ +GI + TY T +SA+A
Sbjct: 231 LSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFAR 290
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ K++ M A +P D Y + G + G +D+A LK E++ A
Sbjct: 291 LGWIKQATKVVESMTAYGFEP----DLRTYNVLAVGLCQAGKVDEAF-RLKDEMERLSTA 345
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ YN ++ K+ D LR+ E+ K VK + V+ SL K LE A
Sbjct: 346 LPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALG 405
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
E+ + L D N LID YC+ G + KA L++ KG
Sbjct: 406 KLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKG 449
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 17/288 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MRD G+ T V +N ++K K G E+ + ++ E G+ D TY T + AY
Sbjct: 372 LEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCK 431
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + + K T+M+ + +D TV K+ + A +L S Q
Sbjct: 432 AGN---VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELL-HSPPQRGFVP 487
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+Y ++ Y K + LR+W+ + +K + ++ Y +I L +++ L+ A
Sbjct: 488 DEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSIST-YNTLIKGLCRMERLKEAIDK 546
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E + L D N +I YC+ G LE A N + V + L G
Sbjct: 547 LNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCL 606
Query: 237 NSQIHKA-------VEAMKKV-LAAYQTLVKWKPSVESLAACLDYFKD 276
+ ++ KA VE KKV + Y TL++ V + L +F D
Sbjct: 607 HGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDD 654
>gi|302788498|ref|XP_002976018.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
gi|300156294|gb|EFJ22923.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
Length = 603
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
L+++ N M+KLY G+ K ++ + ++ + + +TY L A A D EG++
Sbjct: 282 LSQSPFALNLMMKLYKHKGDNAKFQEMLEKAKDVAVEPNIFTYNVMLDLKAKAGDVEGME 341
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA-LAMLKKSEEQIKGAKVNSAYNVIL 127
KI M+ +PN D Y T+ GY K GL DKA +++L+ + K Y ++
Sbjct: 342 KIFEEMKLNPNAKPDGTSYFTLCKGYLKAGLTDKAEVSLLRMEVGPFRRTKATFEY--MM 399
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS 162
YG+ G DV R+W+ K V +G+ + ++
Sbjct: 400 LAYGQLGLISDVERMWQ---KCKMVPGDGFNSFLA 431
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 124/291 (42%), Gaps = 17/291 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V+YN+++ Y K GN E+ +++M MEE G+ Y + Y +DK L +
Sbjct: 298 VIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHC---RAVDKCLNV 354
Query: 74 M-----EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVIL 127
+ ++ V Y + N Y K+G +DKAL + + E+Q G K N Y++I+
Sbjct: 355 FRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQ--GIKHNRKTYSMII 412
Query: 128 TLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
Y + G + ++E + +K Y ++++ K + A ++ ES
Sbjct: 413 DGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCP 472
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
R +ID + + G L A V K+ G ++ + G Q Q+ +A
Sbjct: 473 PTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASI 532
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +++ A P+ S ++ + GD+G A + + + G P
Sbjct: 533 IDEMVVA-----GVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKP 578
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 130/302 (43%), Gaps = 9/302 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G++ Y+ ++ Y + G+ E + ++ Y + AY
Sbjct: 250 VEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCK 309
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK--KSEEQIKGAK 118
A + E + I+T ME + + +Y + +GY +DK L + + K+ + +
Sbjct: 310 AGNMERAEAIMTAME-EQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSP 368
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+Y ++ LY K GK D L+I E+ + +K Y +I ++L D +A +F
Sbjct: 369 TVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVF 428
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E+ + + D N L++ +C+NG + +A L+ + ++++ + G+ +
Sbjct: 429 EDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKI 488
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ A E ++ + + ++PS + + G + A + I+ + G P
Sbjct: 489 GDLRMAFETVRDM-----KMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHP 543
Query: 298 TD 299
+
Sbjct: 544 NE 545
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 128/327 (39%), Gaps = 41/327 (12%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
+ GL+ T V Y ++ LY K G +K + +EME+ GI ++R TY + Y D
Sbjct: 363 ETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTA 422
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE------------- 112
+ M ++ + D + Y + N + K G +++AL +L + E
Sbjct: 423 NAFSVFEDM-SNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTII 481
Query: 113 --------------------QIKGAKVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAV 150
++ G + ++A YNVI+ + G+ D I E+ V
Sbjct: 482 IDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGV 541
Query: 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
Y +I + D+ A K F + L D L+ C+ G ++
Sbjct: 542 HPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLA 601
Query: 211 LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270
+ G ++ + L G+ Q + +A + M+K+ ++ L P + S +
Sbjct: 602 ITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKM--RHEGLT---PDIHSYTSF 656
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIP 297
++ GD+ A IE + +G P
Sbjct: 657 INACCKAGDMLKATETIEQMKQQGVQP 683
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 2/204 (0%)
Query: 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK 151
N YGK G A A + V+S N+I + + + E+ + V
Sbjct: 200 NYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVS 259
Query: 152 VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
Y +IS +L D+E+AE+ F+ S+ ++ I N +I YC+ G +E+AE +
Sbjct: 260 PNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAI 319
Query: 212 VNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACL 271
+ + +G E + + L GY + K + +++ A +T + P+V S +
Sbjct: 320 MTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGL--SPTVVSYGCLI 377
Query: 272 DYFKDEGDIGGAENFIELLNDKGF 295
+ + G + A + D+G
Sbjct: 378 NLYSKLGKMDKALQISNEMEDQGI 401
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 17/219 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++++GL + Y S+LK K G + ++ EM G+ + Y Y L +A
Sbjct: 570 RIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRG 629
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
D I+ M + + D Y + N K G + KA +++ ++Q G + N
Sbjct: 630 DMWEASDIMQKMRHE-GLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQ--GVQPNLQ 686
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFE-- 178
AY ++ + + L ++ K A + + Y +++SLL + + E +F+
Sbjct: 687 AYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMTSLLSRAAV-ARETVFDGV 745
Query: 179 -----EWESQALCYDTRIP----NFLIDVYCRNGLLEKA 208
E Q +C D FLI ++G L +A
Sbjct: 746 LRVTSEMVDQGICVDFATAKHWQRFLIKAERQSGDLTRA 784
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 19/226 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ G + YN ++ + G ++ S++ EM G+ + +Y T + YA
Sbjct: 498 VRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYAC 557
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D K ++ + + D + YA++ K G + LA+ +E G +N
Sbjct: 558 IGDMGLAFKYFNRIK-EVGLKPDVIAYASLLKACCKAGRMQSTLAI--TAEMAAAGVPMN 614
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLES 172
+ YN++L + + G +WE K+ + G Y + I++ K D+
Sbjct: 615 NYIYNILLDGWAQRGD------MWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLK 668
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218
A + E+ + Q + + + LI + EKA L+ ++++K
Sbjct: 669 ATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKA--LICYDEMK 712
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 129/303 (42%), Gaps = 17/303 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGN-FEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM + G T + YN +L ++ K G + K+ SL+ +M+ +GI D YTY T ++
Sbjct: 231 FKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCK 290
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S H+ ++ M+A + D V Y + + YGK +A+ +L +E ++ G
Sbjct: 291 RGSLHQEAAQVFEEMKA-AGFSHDKVTYNALLDVYGKSHRPKEAMKVL--NEMELNGFSP 347
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ YN +++ Y + G D+ + + ++ +K K Y ++S + +ESA IF
Sbjct: 348 SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIF 407
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EE + + N I +Y G + + + G + +W L + QN
Sbjct: 408 EEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQN 467
Query: 238 ---SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
S++ + MK+ + P E+ + + G A + D G
Sbjct: 468 GMDSEVSGVFKEMKR--------AGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG 519
Query: 295 FIP 297
P
Sbjct: 520 VTP 522
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 127/293 (43%), Gaps = 12/293 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ V +N++L ++ + G ++ + EM+ G +R T+ T +SAY+ E
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ M D V D Y TV + G+ +++ +L + E+ K N Y +
Sbjct: 509 MTVYRRM-LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED--GRCKPNELTYCSL 565
Query: 127 LTLYGKYGKKDDVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
L Y GK+ ++ E+Y ++ + ++ K D L AE+ F E + +
Sbjct: 566 LHAYAN-GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERG 624
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N ++ +Y R ++ KA ++++ K +G + ++ L + +++ K+
Sbjct: 625 FSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSE 684
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
E ++++LA KP + S + + + A + D G +P
Sbjct: 685 EILREILAK-----GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVP 732
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 10/220 (4%)
Query: 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDV 139
+LD Y ++ + + G +A+ + KK EE+ G K YNVIL ++GK G +
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEEE--GCKPTLITYNVILNVFGKMGTPWNK 262
Query: 140 LRIWELYKKAVKVLNNGYR-NVISSLLKLDDL-ESAEKIFEEWESQALCYDTRIPNFLID 197
+ K+ + + Y N + + K L + A ++FEE ++ +D N L+D
Sbjct: 263 ITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLD 322
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
VY ++ ++A ++N +L G + ++ L + Y ++ + +A+E +K +A T
Sbjct: 323 VYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAME-LKNQMAEKGT- 380
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KP V + L F+ G + A N E + + G P
Sbjct: 381 ---KPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKP 417
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 128/327 (39%), Gaps = 43/327 (13%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + + V YNS++ Y + G ++ L ++M E G D +TY T LS + A E
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESA 403
Query: 68 DKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKGAKVN-SA 122
I M PN+ + YG G K + M+K +E + G +
Sbjct: 404 MNIFEEMRNAGCKPNIC----TFNAFIKMYGNRG---KFVDMMKIFDEINVCGLSPDIVT 456
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDLESAEKIFEEWE 181
+N +L ++G+ G +V +++ K+A V + +IS+ + E A ++
Sbjct: 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE---KLKGREIHVKSWYYLATGYRQNS 238
+ D N ++ R G+ E++E ++ + K E+ S + ++
Sbjct: 517 DAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIG 576
Query: 239 QIHK-AVEAMKKVLAAYQTLVK--------------------------WKPSVESLAACL 271
+H A E V+ L+K + P + +L + +
Sbjct: 577 LMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMV 636
Query: 272 DYFKDEGDIGGAENFIELLNDKGFIPT 298
+ +G A ++ + ++GF P+
Sbjct: 637 SIYGRRQMVGKANEVLDYMKERGFTPS 663
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 129/303 (42%), Gaps = 17/303 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGN-FEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM + G T + YN +L ++ K G + K+ SL+ +M+ +GI D YTY T ++
Sbjct: 231 FKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCK 290
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S H+ ++ M+A + D V Y + + YGK +A+ +L +E + G
Sbjct: 291 RGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVL--NEMVLNGFSP 347
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ YN +++ Y + G D+ + + ++ +K K Y ++S + +ESA IF
Sbjct: 348 SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIF 407
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EE + + N I +Y G + + + + G + +W L + QN
Sbjct: 408 EEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQN 467
Query: 238 ---SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
S++ + MK+ + P E+ + + G A + D G
Sbjct: 468 GMDSEVSGVFKEMKR--------AGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG 519
Query: 295 FIP 297
P
Sbjct: 520 VTP 522
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 127/293 (43%), Gaps = 12/293 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ V +N++L ++ + G ++ + EM+ G +R T+ T +SAY+ E
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ M D V D Y TV + G+ +++ +L + E+ K N Y +
Sbjct: 509 MTVYRRM-LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED--GRCKPNELTYCSL 565
Query: 127 LTLYGKYGKKDDVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
L Y GK+ ++ E+Y ++ + ++ K D L AE+ F E + +
Sbjct: 566 LHAYAN-GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERG 624
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N ++ +Y R ++ KA ++++ K +G + ++ L + +++ K+
Sbjct: 625 FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSE 684
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
E ++++LA KP + S + + + A + + G +P
Sbjct: 685 EILREILAK-----GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVP 732
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDV 139
+LD Y ++ + + G +A+ + KK EE G K YNVIL ++GK G +
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEED--GCKPTLITYNVILNVFGKMGTPWNK 262
Query: 140 LRIWELYKKAVKVLNNGYR-NVISSLLKLDDL-ESAEKIFEEWESQALCYDTRIPNFLID 197
+ K+ + + Y N + + K L + A ++FEE ++ YD N L+D
Sbjct: 263 ITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD 322
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
VY ++ ++A ++N L G + ++ L + Y ++ + +A+E +K +A T
Sbjct: 323 VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME-LKNQMAEKGT- 380
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KP V + L F+ G + A + E + + G P
Sbjct: 381 ---KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP 417
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 11/210 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + + V YNS++ Y + G ++ L ++M E G D +TY T LS + A E
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESA 403
Query: 68 DKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAY 123
I M PN+ + YG G + + + E + G + +
Sbjct: 404 MSIFEEMRNAGCKPNIC----TFNAFIKMYGNRGKFTEMMKIF--DEINVCGLSPDIVTW 457
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDLESAEKIFEEWES 182
N +L ++G+ G +V +++ K+A V + +IS+ + E A ++
Sbjct: 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLD 517
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
+ D N ++ R G+ E++E ++
Sbjct: 518 AGVTPDLSTYNTVLAALARGGMWEQSEKVL 547
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 12/289 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + G+ YN++L + G +E+ + L EMEE D Y+Y + L AYA+A
Sbjct: 477 KRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANA 536
Query: 62 SDHEGIDKILTMMEADPNVALDWVI--YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + + + ++ +W++ V + + +KA L++ + +
Sbjct: 537 KRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSL---DI 593
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N N ++++YGK V +I L K+ A+ + Y +++ +L D E E I
Sbjct: 594 N-VLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILT 652
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E +S + D N +I Y R G +++A L + K G + V ++ Y NS
Sbjct: 653 EIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNS 712
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+A+E L Y KP+ + + ++ + G + A+ F+
Sbjct: 713 MFEEAIE-----LVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFV 756
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 114/255 (44%), Gaps = 11/255 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G+A YN+++ + +++ + EM+ +G D+ T+ + L Y A
Sbjct: 234 MKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARR 293
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
H+ +++ ME P+V V Y ++ + Y K GLL++A+A+ K E ++KG K +
Sbjct: 294 HDEAIEVIQEMERVGCPPSV----VTYNSLISSYVKDGLLEQAVAL--KQEMEVKGMKPD 347
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y +++ + GK D + + E+ + K Y +I +F+
Sbjct: 348 VVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFD 407
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E+ S D N L+ V+ +NGL + + K G ++ L + Y +
Sbjct: 408 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 467
Query: 239 QIHKAVEAMKKVLAA 253
A++ K+++ A
Sbjct: 468 LFDLAMQIYKRMMEA 482
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ + + YNS++ +Y + G+ EK ++++ E++ +G+ DRY+Y T + AY
Sbjct: 619 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 678
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ ++ + M+ + D V Y Y + ++A+ +++ Q G K N
Sbjct: 679 MKEASRLFSEMKCS-GLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQ--GCKPNERT 735
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY 157
YN I+ Y + GK D +++ + L+ GY
Sbjct: 736 YNSIVEGYCRNGKLTDA----KIFVSNLPQLHPGY 766
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 23/222 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M +G + V YNS++ Y K G E+ +L EME G+ D TY T +S
Sbjct: 301 IQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGL-- 358
Query: 61 ASDHEG-IDKILTMME------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
D G ID + + PN+ Y + +G G + +A+ ++
Sbjct: 359 --DRAGKIDAAIVEYDEMVRNGCKPNLC----TYNALIKMHGVRGKFPEMMAVF----DE 408
Query: 114 IKGAKVNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDD 169
+ A +N +L ++G+ G +V +++ KKA + + Y ++ISS +
Sbjct: 409 FRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 468
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ A +I++ + D N ++ R G E+AE L
Sbjct: 469 FDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 510
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 7/209 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G V +NS+L +Y K ++ ++ EME G TY + +S+Y
Sbjct: 268 EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDG 327
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKVN- 120
E + ME + D V Y T+ +G + G +D A+ + +E ++ G K N
Sbjct: 328 LLEQAVALKQEMEVK-GMKPDVVTYTTLISGLDRAGKIDAAIV---EYDEMVRNGCKPNL 383
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIFEE 179
YN ++ ++G GK +++ +++ ++ A V + N + ++ + L+S +F+E
Sbjct: 384 CTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKE 443
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ + LI Y R GL + A
Sbjct: 444 MKKAGYIPERDTYVSLISSYSRCGLFDLA 472
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 102/214 (47%), Gaps = 7/214 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+ R G V +N++L ++ + G ++ + EM++ G +R TY + +S+Y+
Sbjct: 408 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 467
Query: 63 DHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ +I MMEA + D Y V + + G ++A + + EE + K +
Sbjct: 468 LFDLAMQIYKRMMEA--GIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEE--RDCKPDE 523
Query: 122 -AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+Y+ +L Y + D + + ++Y + ++ N + ++ K+++L AEK F E
Sbjct: 524 YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 583
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ D + N ++ +Y +N ++ K E +++
Sbjct: 584 LRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILS 617
>gi|302764000|ref|XP_002965421.1| hypothetical protein SELMODRAFT_406783 [Selaginella moellendorffii]
gi|300166235|gb|EFJ32841.1| hypothetical protein SELMODRAFT_406783 [Selaginella moellendorffii]
Length = 584
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
L+++ N M+KLY G+ K ++ + ++ + + +TY L A A D EG++
Sbjct: 263 LSQSPFALNLMMKLYKHKGDNAKFQEMLEKAKDVAVEPNIFTYNVMLDLKAKAGDVEGME 322
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA-LAMLKKSEEQIKGAKVNSAYNVIL 127
KI M+ +PN D Y T+ GY K GL DKA +++L+ + K Y ++
Sbjct: 323 KIFEEMKLNPNAKPDGTSYFTLCKGYLKAGLTDKAEVSLLRMEVGPFRRTKATFEY--MM 380
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS 162
YG+ G DV R+W+ K V +G+ + ++
Sbjct: 381 LAYGQLGLISDVERMWQ---KCKMVPGDGFNSFLA 412
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 138/328 (42%), Gaps = 33/328 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M G + YN+++ K G +E+ + EM +G++ D TY + L
Sbjct: 283 MHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 342
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + I + M + +V D V ++++ + + + G LDKAL M S ++ N
Sbjct: 343 KGDAVETENIFSDMRSR-DVVPDLVCFSSMMSLFTRSGNLDKAL-MYFNSVKEAGLIPDN 400
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ Y + G + + + E+ ++ + Y ++ L K L A+K+F E
Sbjct: 401 VIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 460
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L D+ LID +C+ G L+ A L K K ++ V ++ L G+ +
Sbjct: 461 MTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGD 520
Query: 240 IHKAVE-----AMKKVLA---AYQTLVK--------------W--------KPSVESLAA 269
I A E K++L ++ LV W KP+V +
Sbjct: 521 IDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNS 580
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + G+ E F+E + +GF+P
Sbjct: 581 MIKGYCRSGNASDGEIFLEKMISEGFVP 608
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 8/296 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+++ GL V+Y +++ Y + G + +L +EM + G D TY T L
Sbjct: 391 VKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKM 450
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNSA 122
DK+ M + + D + +G+ K+G L A+ + KK E++IK V
Sbjct: 451 LGEADKLFNEM-TERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVV--T 507
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN +L +GK G D IW ++ K + + ++++L L A ++++E
Sbjct: 508 YNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMI 567
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S+++ I N +I YCR+G E + +G S+ L G+ + +
Sbjct: 568 SKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMS 627
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KA +KK+ LV P V + + L F E + AE + + ++G P
Sbjct: 628 KAFGLVKKMEEKQGGLV---PDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNP 680
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 13/248 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q++ G+ N M+ K G EK+ + + E++E G+ D TY T +SAY
Sbjct: 214 QEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAY--- 270
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYA--TVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S +++ +M A P+ +Y TV NG K G ++A K+ ++ + +
Sbjct: 271 SSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERA----KEVFAEMLRSGL 326
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYK--KAVKVLNN--GYRNVISSLLKLDDLESAEK 175
+ +L + KK D + ++ ++ V+ + + +++S + +L+ A
Sbjct: 327 SPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 386
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
F + L D I LI YCR G++ +A NL N +G + V ++ + G
Sbjct: 387 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLC 446
Query: 236 QNSQIHKA 243
+ + +A
Sbjct: 447 KRKMLGEA 454
>gi|30681109|ref|NP_179664.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|22655188|gb|AAM98184.1| unknown protein [Arabidopsis thaliana]
gi|30023806|gb|AAP13436.1| At2g20720 [Arabidopsis thaliana]
gi|330251967|gb|AEC07061.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 299
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 129/287 (44%), Gaps = 30/287 (10%)
Query: 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS--DHEGIDKILTMMEA 76
ML LY++ + + + L+ EM+E + + L++Y+ AS D +G++K L+ E
Sbjct: 1 MLCLYHQAEDHDMVVKLLGEMDEKKMQPQGLCFVKLLTSYSMASVVDVQGVEKFLSKWEV 60
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK 136
+ W + G Y + G ++K LA+L++SE + Y ++T+Y
Sbjct: 61 --MIQDKWTTFYFPGLVYIRAGFMEKGLALLRRSETFVDDGCREIIYGCLMTVYCNENLT 118
Query: 137 DDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195
+DV R+W L K + ++ +++ + K DL+ + EEW C + + +F
Sbjct: 119 EDVYRLWNLAKDYGISFDSSRCSDIVKAFTKKGDLDG---VMEEWNE---CPNLDLMDFG 172
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH----KAVEAMKKVL 251
+ C EK +++ ++ K W LA ++ N+ + K E K+V
Sbjct: 173 LQHRCVKEEAEKVVDMLGKKESK--------WESLA--HKVNTLVEDEDAKEEERRKRVA 222
Query: 252 AAYQTLV--KWKPS---VESLAACLDYFKDEGDIGGAENFIELLNDK 293
A + + +W P S AC+ Y + D+ + + LLN +
Sbjct: 223 EAMEGRLHDRWNPKNSMALSAFACVQYVEGRRDMESTADILRLLNKR 269
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 45/322 (13%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
T YN++LK Y K G+ + + ++ EM + G+ D TY + AY A E +L
Sbjct: 292 TRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 351
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYG 131
MEAD V +++ + G+ G KA A+L+ E G + + YNV++ +G
Sbjct: 352 EMEAD-GVKPSSYVFSRILAGFRDRGEWQKAFAVLR--EMHASGVRPDRHFYNVMIDTFG 408
Query: 132 KY-----------------------------------GKKDDVLRIWELYKKAVKVLNNG 156
KY G+ D + +++ +++ L
Sbjct: 409 KYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTT 468
Query: 157 YRNVISSLLKLDDL-ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215
N++ +LL + E E + E + Q L + L+DVY R+G ++A + +
Sbjct: 469 TYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAM 528
Query: 216 KLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFK 275
K G + ++ L Y Q A+ +K + A + S L + ++ F
Sbjct: 529 KADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRAD-----GLEASTVVLNSLINAFG 583
Query: 276 DEGDIGGAENFIELLNDKGFIP 297
++ I A + ++ + + G P
Sbjct: 584 EDRRIAEAFSVLQFMKENGLRP 605
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/216 (18%), Positives = 90/216 (41%), Gaps = 6/216 (2%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL-YGKYGKKDDVLR 141
D +++ + + + + L D AL +L ++ + N+ +I +L + + + L
Sbjct: 220 DAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALF 279
Query: 142 IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
+ +K Y ++ +K+ L++AE++ +E + D + L+D Y R
Sbjct: 280 LEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 339
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
G E A L+ + G + + + G+R + KA ++++ A+ +
Sbjct: 340 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHAS-----GVR 394
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P +D F +G A + + + ++G P
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEP 430
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 45/322 (13%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
T YN++LK Y K G+ + + ++ EM + G+ D TY + AY A E +L
Sbjct: 159 TRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 218
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYG 131
MEAD V +++ + G+ G KA A+L+ E G + + YNV++ +G
Sbjct: 219 EMEAD-GVKPSSYVFSRILAGFRDRGEWQKAFAVLR--EMHASGVRPDRHFYNVMIDTFG 275
Query: 132 KY-----------------------------------GKKDDVLRIWELYKKAVKVLNNG 156
KY G+ D + +++ +++ L
Sbjct: 276 KYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTT 335
Query: 157 YRNVISSLLKLDDL-ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215
N++ +LL + E E + E + Q L + L+DVY R+G ++A + +
Sbjct: 336 TYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAM 395
Query: 216 KLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFK 275
K G + ++ L Y Q A+ +K + A + S L + ++ F
Sbjct: 396 KADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRAD-----GLEASTVVLNSLINAFG 450
Query: 276 DEGDIGGAENFIELLNDKGFIP 297
++ I A + ++ + + G P
Sbjct: 451 EDRRIAEAFSVLQFMKENGLRP 472
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/216 (18%), Positives = 90/216 (41%), Gaps = 6/216 (2%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL-YGKYGKKDDVLR 141
D +++ + + + + L D AL +L ++ + N+ +I +L + + + L
Sbjct: 87 DAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALF 146
Query: 142 IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
+ +K Y ++ +K+ L++AE++ +E + D + L+D Y R
Sbjct: 147 LEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 206
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
G E A L+ + G + + + G+R + KA ++++ A+ +
Sbjct: 207 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHAS-----GVR 261
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P +D F +G A + + + ++G P
Sbjct: 262 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEP 297
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 22/294 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ YNSM+ + K + + + + M G + D T+ + Y A
Sbjct: 343 EMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAK 402
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ K+L M VA + + Y T+ +G+ ++G L+ AL +L++ V +
Sbjct: 403 RVDDGMKLLHEMSRRGLVA-NTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTC 461
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN------------NGYRNVISSLLKLDDL 170
N +L GK D L ++++ +K+ L+ Y +I L+
Sbjct: 462 -NTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKF 520
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
AE+++EE + L DT N +ID C+ L++A + + KG V ++ L
Sbjct: 521 SEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTL 580
Query: 231 ATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
GY + ++ +E + ++A Y+TL+ V ++ LD F++
Sbjct: 581 INGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQE 634
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 122/285 (42%), Gaps = 12/285 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ + +++ + G + +L+ M E+G+ ++ TY T + D +L
Sbjct: 177 VIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLR 236
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME + + VIY+ + +G K G A + SE Q KG N YN ++ +
Sbjct: 237 KMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLF--SEMQEKGISPNLFTYNCMINGFC 294
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ + R+ E++++ + + +I++L+K AE+++ E + + +T
Sbjct: 295 SSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTI 354
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV----EA 246
N +ID + + L+ AE + KG V ++ L GY ++ + E
Sbjct: 355 TYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEM 414
Query: 247 MKKVLAA----YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ L A Y TL+ + +L A LD ++ G N +
Sbjct: 415 SRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVV 459
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/299 (18%), Positives = 118/299 (39%), Gaps = 34/299 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M++ G++ YN M+ + +G + + L+ EM E ++ D T+ ++A
Sbjct: 271 FSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVK 330
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+++ M + + + Y ++ +G+ K LD A M KG +
Sbjct: 331 EGKFFEAEELYNEMLPR-GIIPNTITYNSMIDGFSKQNRLDAAERMFYLMAT--KGCSPD 387
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+++++ Y + DD +++ E+ ++ + Y +I +L +L +A + +
Sbjct: 388 VITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQ 447
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S +C + N L+D C NG L+ A
Sbjct: 448 EMISSGVCPNVVTCNTLLDGLCNNGKLKDA-----------------------------L 478
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ K ++ K L A +P V++ + +EG AE E + +G +P
Sbjct: 479 EMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVP 537
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 3/194 (1%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN+M+ +Y + G E S+ M+E G T D TY + L A+A E +++I MM
Sbjct: 234 YNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMR 293
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
D + D + Y T+ + YGK G+ KA + + +E+ + + + V++ GK G
Sbjct: 294 -DARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPD-SVTFTVLIDTLGKAGF 351
Query: 136 KDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
++ ++E + K V+ + +I + K D AE + + D +
Sbjct: 352 VNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSV 411
Query: 195 LIDVYCRNGLLEKA 208
++DV+ + G+ EK
Sbjct: 412 MLDVFFKAGMPEKC 425
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 144/332 (43%), Gaps = 24/332 (7%)
Query: 4 MRDL---GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
RDL G A T Y+++L Y +TGNFE+ + M G+ + L A+
Sbjct: 669 FRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGR 728
Query: 61 ASDHEGIDKI---LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + I + L M PN VI+ + + + G L++A +M ++ +E
Sbjct: 729 AGKAKEISEFFQRLPEMGISPNSRTFVVIF----HAFSRNGNLEEARSMYRQMKEAGFSP 784
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
+ + +L LY + + D + + KKA L+ + Y ++IS KL +A +
Sbjct: 785 SIQ-VFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALV 843
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+ + D N LI +Y RN ++++A+ L+ G ++ ++ L + Y +
Sbjct: 844 FKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGR 903
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
Q ++ E + K +A KP + ++ ++ G+ E IE + GF
Sbjct: 904 -LQAYEDAELVFKSIAE----TGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFE 958
Query: 297 PT-DLQDKLLDNVQNGKSN------LETLREL 321
P+ L+D+ G + LETL E+
Sbjct: 959 PSLTTIHMLMDSYGKGGATGKAEEVLETLPEI 990
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 115/254 (45%), Gaps = 9/254 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q++ ++G++ + + + + + GN E+ S+ +M+E G + + L+ Y+
Sbjct: 739 FQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSR 798
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++++ ++ + LD IY + + Y K+G A A++ K ++I +
Sbjct: 799 ETVEIDAEELVKDIK-KAGLELDIDIYNHMISLYSKLGSYRNA-ALVFKGMQEIGCSPDA 856
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN----NGYRNVISSLLKLDDLESAEKI 176
+ +N ++ L Y + V L ++ +K N + Y +IS+ +L E AE +
Sbjct: 857 TTFNTLIML---YSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELV 913
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+ D N +I+VY + G K E ++ K+ G E + + + L Y +
Sbjct: 914 FKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGK 973
Query: 237 NSQIHKAVEAMKKV 250
KA E ++ +
Sbjct: 974 GGATGKAEEVLETL 987
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 130/301 (43%), Gaps = 21/301 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ GL Y +++ + N + EM +G + D Y + +S A
Sbjct: 453 EMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAG 512
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+++ ++ +LD Y + +G+ K L++ +L + EE G K ++
Sbjct: 513 RMNDASVVVSKLKL-AGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEET--GVKPDTI 569
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN +++ GK G ++ E + K+ ++ Y +I + +++ KIF E
Sbjct: 570 TYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGE- 628
Query: 181 ESQALCYDTRIP------NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+C +++P N LID CRN +++A +L+ K+K + ++ + G
Sbjct: 629 ----MCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGV 684
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
R +HKA E M +++ +P ++ ++ G+I ++F+E D
Sbjct: 685 RDKKMLHKAFELMDRMVEE-----ACRPDYITMEVLTEWLSAVGEIEKLKHFVEGYQDSS 739
Query: 295 F 295
+
Sbjct: 740 Y 740
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 9/241 (3%)
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW 143
V Y + +G+ K G D+A + ++ E+ G + N N ++ K+G+ + +
Sbjct: 394 VTYNCLIDGFFKAGNFDRAHELFRQMNEE--GVQPNVITLNTLVDGLCKHGRVHRAVEFF 451
Query: 144 -ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
E+ K +K Y +IS+ ++++ A + FEE S D + LI C
Sbjct: 452 NEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIA 511
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
G + A +V+ KL G + + L +G+ + ++ + E + ++ +T VK P
Sbjct: 512 GRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEM---EETGVK--P 566
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY 322
+ + Y GD A +E + +G P+ + + + K N++ +++
Sbjct: 567 DTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIF 626
Query: 323 G 323
G
Sbjct: 627 G 627
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + G+ T+ YN+++ KTG+F +M +M + G+ TY + AY
Sbjct: 556 LTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCS 615
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + KI M + V + VIY + + + +D+A+++++ + ++K + N
Sbjct: 616 KKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLME--DMKVKRVRPN 673
Query: 121 -SAYNVIL 127
+ YN IL
Sbjct: 674 TTTYNAIL 681
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 101/234 (43%), Gaps = 21/234 (8%)
Query: 40 EENGITYDRYTYCTRLSAYADAS-------------DHEGIDKILTMMEADPNVALDWVI 86
++NG+ ++ RL DA+ D + ++++L ME + V
Sbjct: 260 QKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKR-KIRPSVVT 318
Query: 87 YATVGNGYGKVGLLDKALAMLK----KSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLR 141
+ + N K +D+AL + K G + + +N ++ K GK++D L
Sbjct: 319 FGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLS 378
Query: 142 IWELYKKAVKVLNNG--YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199
+ E K N Y +I K + + A ++F + + + + N L+D
Sbjct: 379 LLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGL 438
Query: 200 CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
C++G + +A N K KG + + ++ L + + + I++A++ +++L++
Sbjct: 439 CKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSS 492
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 7/147 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ K++ G + YN ++ + K E++ L+ EMEE G+ D TY T +S
Sbjct: 521 VSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGK 580
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
D K++ M + P+V V Y + + Y +D+ + + + K
Sbjct: 581 TGDFATASKVMEKMIKEGLRPSV----VTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVP 636
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWE 144
YN+++ + D + + E
Sbjct: 637 PNTVIYNILIDALCRNNDVDRAISLME 663
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 123/269 (45%), Gaps = 15/269 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K + GLA V +N+++ Y + G+ K + + +ME G+ + TY + + + +
Sbjct: 380 LKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCE 439
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +K + M + V + Y T+ +GYG+ L D+ +L++ E+ KG K N
Sbjct: 440 MKNMEEAEKCIKKM-VEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEK--KGLKPN 496
Query: 121 S-AYNVILTLYGKYGK--KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+Y ++ K + +V+ + ++ + V Y +I L+ A + F
Sbjct: 497 VISYGCLINCLCKDANILEAEVI-LGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFF 555
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E ++ + N LI+ C+ G + +AENL + KG V ++ L +GY
Sbjct: 556 DEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSA 615
Query: 238 SQIHKAVE--------AMKKVLAAYQTLV 258
+ KA+E +K L Y L+
Sbjct: 616 GNVQKALELYETMKKSGIKPTLNTYHRLI 644
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 115/248 (46%), Gaps = 13/248 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M+ + T + +NS+L + E+ ++ EME G DR+TY T +
Sbjct: 276 ERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKC 335
Query: 62 SDHEGIDKILTMMEADPNVALDWVIY--ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ +D +T+ E + + Y + + N K G ++KA +LKK E A V
Sbjct: 336 GN---VDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLEN-GLAPV 391
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKK--AVKVLNN--GYRNVISSLLKLDDLESAEK 175
+N I+ Y + G D+ + + +K AV + N Y +++ ++ ++E AEK
Sbjct: 392 GVFFNTIVNGYCQVG---DINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEK 448
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
++ + + + N LID Y R+ L ++ ++ + KG + +V S+ L
Sbjct: 449 CIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLC 508
Query: 236 QNSQIHKA 243
+++ I +A
Sbjct: 509 KDANILEA 516
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 135/307 (43%), Gaps = 30/307 (9%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D +A + YN+++ Y K G E+ ++ M+ + T+ + L+ A
Sbjct: 242 EMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQ 301
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KGAKV-N 120
E ++L ME V D Y T+ +G+ K G +D ++ + SEE + KG ++ +
Sbjct: 302 MMEEAQRVLEEMEVYGFVP-DRFTYTTLFDGHLKCGNVDASITL---SEEAVRKGVQILD 357
Query: 121 SAYNVILTLYGKYG---KKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDL 170
+++L K G K ++VL+ K L NG + +++ ++ D+
Sbjct: 358 YTCSILLNALCKEGNMEKAEEVLK---------KFLENGLAPVGVFFNTIVNGYCQVGDI 408
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
A E+ E+ L + N L+ +C +E+AE + KG +V+++ L
Sbjct: 409 NKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTL 468
Query: 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
GY ++ + + ++++ KP+V S ++ + +I AE + +
Sbjct: 469 IDGYGRSCLFDRCFQILEEMEKK-----GLKPNVISYGCLINCLCKDANILEAEVILGDM 523
Query: 291 NDKGFIP 297
+G +P
Sbjct: 524 VHRGVVP 530
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 137/318 (43%), Gaps = 12/318 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M+ G++ VYN ++ K + + L EM + + +R TY T + Y
Sbjct: 205 MTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCK 264
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E I M+ + NV + + ++ NG + ++++A +L+ E ++ G +
Sbjct: 265 VGQLEEAFNIRERMKVE-NVEPTIITFNSLLNGLCRAQMMEEAQRVLE--EMEVYGFVPD 321
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y + + K G D + + E +K V++L+ ++++L K ++E AE++ +
Sbjct: 322 RFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLK 381
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG-REIHVKSWYYLATGYRQN 237
++ L N +++ YC+ G + KA + + G R HV ++ L + +
Sbjct: 382 KFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHV-TYNSLVKKFCEM 440
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +A + +KK++ P+VE+ +D + +E + KG P
Sbjct: 441 KNMEEAEKCIKKMVEK-----GVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKP 495
Query: 298 TDLQDKLLDNVQNGKSNL 315
+ L N +N+
Sbjct: 496 NVISYGCLINCLCKDANI 513
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY-CTRLSAYAD 60
Q+M + L V+YN+++ Y + G+ +K SL ME GI D+ TY C L + +
Sbjct: 660 QEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKE 719
Query: 61 ASDHE 65
H+
Sbjct: 720 GRMHK 724
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139
++ D + Y ++ +GY G + KAL + E +K + + N L GK+ V
Sbjct: 598 LSFDVITYNSLISGYSSAGNVQKALELY----ETMKKSGIKPTLNTYHRLIAGCGKEGLV 653
Query: 140 LRIWELYKKAVKVLNNGYRNVISSLLKL----DDLESAEKIFEEWESQALCYDTRIPNFL 195
L + ++Y++ +++ R + ++L+ D++ A + E+Q + D N L
Sbjct: 654 L-VEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCL 712
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
I + + G + K +NLVN K++G +++ L G+
Sbjct: 713 ILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGH 751
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 10/224 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ GL+ V YN++L + + G + +L+ M+ +GI + TY T +SA+A
Sbjct: 231 LSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFAR 290
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ K++ M A +P D Y + G + G +D+A LK E++ A
Sbjct: 291 LGWIKQATKVVESMTAYGFEP----DLRTYNVLAMGLCQAGKVDEAF-RLKDEMERLGTA 345
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ YN ++ K+ D LR+ E+ K VK + V+ SL K LE A
Sbjct: 346 LPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALG 405
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
E+ + L D N LID YC+ G + KA L++ KG
Sbjct: 406 KLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKG 449
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 124/288 (43%), Gaps = 17/288 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MRD G+ T V +N ++K K G E+ + ++ E G+ D TY T + AY
Sbjct: 372 LEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCK 431
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + + K T+M+ + +D TV K+ + A +L S Q
Sbjct: 432 AGN---VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELL-HSPPQRGFVP 487
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+Y ++ Y K + LR+W+ + +K + ++ Y +I L +++ L+ A
Sbjct: 488 DEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSIST-YNTLIKGLCRMERLKEAIDK 546
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E+ + L D N +I YC+ G LE A N + V + L G
Sbjct: 547 LNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCL 606
Query: 237 NSQIHKA-------VEAMKKV-LAAYQTLVKWKPSVESLAACLDYFKD 276
+ ++ KA VE KKV + Y TL++ V + L +F D
Sbjct: 607 HGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDD 654
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 12/289 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + G+ YN++L + G +E+ + L EMEE D Y+Y + L AYA+A
Sbjct: 459 KRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANA 518
Query: 62 SDHEGIDKILTMMEADPNVALDWVI--YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + + + ++ +W++ V + + +KA L++ + +
Sbjct: 519 KRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSL---DI 575
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N N ++++YGK V +I L K+ A+ + Y +++ +L D E E I
Sbjct: 576 N-VLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILT 634
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E +S + D N +I Y R G +++A L + K G + V ++ Y NS
Sbjct: 635 EIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNS 694
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+A+E L Y KP+ + + ++ + G + A+ F+
Sbjct: 695 MFEEAIE-----LVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFV 738
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 114/255 (44%), Gaps = 11/255 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G+A YN+++ + +++ + EM+ +G D+ T+ + L Y A
Sbjct: 216 MKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARR 275
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
H+ +++ ME P+V V Y ++ + Y K GLL++A+A+ K E ++KG K +
Sbjct: 276 HDEAIEVIQEMERVGCPPSV----VTYNSLISSYVKDGLLEQAVAL--KQEMEVKGMKPD 329
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y +++ + GK D + + E+ + K Y +I +F+
Sbjct: 330 VVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFD 389
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E+ S D N L+ V+ +NGL + + K G ++ L + Y +
Sbjct: 390 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 449
Query: 239 QIHKAVEAMKKVLAA 253
A++ K+++ A
Sbjct: 450 LFDLAMQIYKRMMEA 464
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ + + YNS++ +Y + G+ EK ++++ E++ +G+ DRY+Y T + AY
Sbjct: 601 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 660
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ ++ + M+ + D V Y Y + ++A+ +++ Q G K N
Sbjct: 661 MKEASRLFSEMKCS-GLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQ--GCKPNERT 717
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY 157
YN I+ Y + GK D +++ + L+ GY
Sbjct: 718 YNSIVEGYCRNGKLTDA----KIFVSNLPQLHPGY 748
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 23/222 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M +G + V YNS++ Y K G E+ +L EME G+ D TY T +S
Sbjct: 283 IQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGL-- 340
Query: 61 ASDHEG-IDKILTMME------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
D G ID + + PN+ Y + +G G + +A+ ++
Sbjct: 341 --DRAGKIDAAIVEYDEMVRNGCKPNLC----TYNALIKMHGVRGKFPEMMAVF----DE 390
Query: 114 IKGAKVNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDD 169
+ A +N +L ++G+ G +V +++ KKA + + Y ++ISS +
Sbjct: 391 FRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 450
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ A +I++ + D N ++ R G E+AE L
Sbjct: 451 FDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 492
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 7/209 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G V +NS+L +Y K ++ ++ EME G TY + +S+Y
Sbjct: 250 EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDG 309
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKVN- 120
E + ME + D V Y T+ +G + G +D A+ + +E ++ G K N
Sbjct: 310 LLEQAVALKQEMEVK-GMKPDVVTYTTLISGLDRAGKIDAAIV---EYDEMVRNGCKPNL 365
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIFEE 179
YN ++ ++G GK +++ +++ ++ A V + N + ++ + L+S +F+E
Sbjct: 366 CTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKE 425
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ + LI Y R GL + A
Sbjct: 426 MKKAGYIPERDTYVSLISSYSRCGLFDLA 454
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 102/214 (47%), Gaps = 7/214 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+ R G V +N++L ++ + G ++ + EM++ G +R TY + +S+Y+
Sbjct: 390 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 449
Query: 63 DHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ +I MMEA + D Y V + + G ++A + + EE + K +
Sbjct: 450 LFDLAMQIYKRMMEA--GIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEE--RDCKPDE 505
Query: 122 -AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+Y+ +L Y + D + + ++Y + ++ N + ++ K+++L AEK F E
Sbjct: 506 YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 565
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ D + N ++ +Y +N ++ K E +++
Sbjct: 566 LRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILS 599
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 45/322 (13%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
T YN++LK Y K G+ + + ++ EM + G+ D TY + AY A E +L
Sbjct: 292 TRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 351
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYG 131
MEAD V +++ + G+ G KA A+L+ E G + + YNV++ +G
Sbjct: 352 EMEAD-GVKPSSYVFSRILAGFRDRGEWQKAFAVLR--EMHASGVRPDRHFYNVMIDTFG 408
Query: 132 KY-----------------------------------GKKDDVLRIWELYKKAVKVLNNG 156
KY G+ D + +++ +++ L
Sbjct: 409 KYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTT 468
Query: 157 YRNVISSLLKLDDL-ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215
N++ +LL + E E + E + Q L + L+DVY R+G ++A + +
Sbjct: 469 TYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAM 528
Query: 216 KLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFK 275
K G + ++ L Y Q A+ +K + A + S L + ++ F
Sbjct: 529 KADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRAD-----GLEASTVVLNSLINAFG 583
Query: 276 DEGDIGGAENFIELLNDKGFIP 297
++ I A + ++ + + G P
Sbjct: 584 EDRRIAEAFSVLQFMKENGLRP 605
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/216 (18%), Positives = 90/216 (41%), Gaps = 6/216 (2%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL-YGKYGKKDDVLR 141
D +++ + + + + L D AL +L ++ + N+ +I +L + + + L
Sbjct: 220 DAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALF 279
Query: 142 IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
+ +K Y ++ +K+ L++AE++ +E + D + L+D Y R
Sbjct: 280 LEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTR 339
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
G E A L+ + G + + + G+R + KA ++++ A+ +
Sbjct: 340 AGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHAS-----GVR 394
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P +D F +G A + + + ++G P
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEP 430
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 144/330 (43%), Gaps = 38/330 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G+ YNS++ + K E+ + + EM E + + +TY + Y+
Sbjct: 474 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 533
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + E D+ M + PNV IY + G+ K G + +A ++ + +
Sbjct: 534 AGEMEIADRYFNEMLSCGVLPNVG----IYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ 589
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V + Y+V++ + GK + I+ EL +K + Y ++IS K +++ A ++
Sbjct: 590 DVQT-YSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQL 648
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
EE + + D N LID C+ G +E+A+NL + + +G + ++ + GY +
Sbjct: 649 LEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCK 708
Query: 237 NSQIHKAVEAMKKVLA--------AYQTLVKWKPSVESLAACLDYFKD------------ 276
+ A + ++++L Y ++ + E LD F++
Sbjct: 709 SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSF 768
Query: 277 ---------EGDIGGAENFIELLNDKGFIP 297
G + A + +E + +K FIP
Sbjct: 769 NTLIEGYCKSGKLQEANHLLEEMIEKQFIP 798
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 122/297 (41%), Gaps = 10/297 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ +++N++L K G EK +M EM E G+ D TY + +
Sbjct: 336 EMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQ 395
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ ++L M+ +A + Y+ + NG + G L A+L+ E + G K N+
Sbjct: 396 NMARAFELLDEMKKR-KLAPTVLTYSVIINGLCRCGNLQGTNAILR--EMVMNGLKPNAV 452
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++T + K G+ ++ I E + ++ + Y ++I K +E A E
Sbjct: 453 VYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEM 512
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L + ID Y + G +E A+ N G +V + L G+ + +
Sbjct: 513 LERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNV 572
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A + +L+ + V++ + + G + A L +KG +P
Sbjct: 573 TEAFSVFRFILSR-----RVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLP 624
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 128/298 (42%), Gaps = 8/298 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ LA T + Y+ ++ + GN + ++++ EM NG+ + Y T ++A+A
Sbjct: 404 LDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 463
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E IL M + + D Y ++ G+ K +++A L + E+ +
Sbjct: 464 EGRVEESRMILERMR-EQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAH 522
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
+ Y + Y K G+ + R + + N G Y +I K ++ A +F
Sbjct: 523 T-YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRF 581
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S+ + D + + LI RNG + +A + + + KG + ++ L +G +
Sbjct: 582 ILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN 641
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ KA + ++++ + P + + +D G+I A+N + + +G P
Sbjct: 642 VDKASQLLEEM-----CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 694
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE-G 66
GL V Y +M+ Y K+ N L+ EM G+ D + Y L+ E
Sbjct: 691 GLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKA 750
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV--NSAYN 124
+D M+E V + T+ GY K G L +A +L EE I+ + + Y
Sbjct: 751 LDLFQEMLEKG---FASTVSFNTLIEGYCKSGKLQEANHLL---EEMIEKQFIPNHVTYT 804
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K G + R+W E+ ++ V Y +++ + ++ +FEE ++
Sbjct: 805 SLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAK 864
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKA-----ENLVNHEKLK-GREIHVKSWYYLATGYRQN 237
+ D +ID YCR G + +A E LV +K G + + + +A G++
Sbjct: 865 GIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIA 924
Query: 238 SQIHKAVEAMKKVL 251
+ +A E ++ ++
Sbjct: 925 GNMDEAAEVLRSMV 938
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 115/247 (46%), Gaps = 9/247 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+M + G+ + Y+ +++ + + N + L+ EM++ + TY ++
Sbjct: 369 MQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCR 428
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +G + IL M + PN V+Y T+ + K G ++++ +L++ EQ
Sbjct: 429 CGNLQGTNAILREMVMNGLKPNA----VVYTTLMTAHAKEGRVEESRMILERMREQGILP 484
Query: 118 KVNSAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V YN ++ + K + ++ + E+ ++ ++ + Y I K ++E A++
Sbjct: 485 DV-FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRY 543
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E S + + I LI+ +C+ G + +A ++ + V+++ L G +
Sbjct: 544 FNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 603
Query: 237 NSQIHKA 243
N ++H+A
Sbjct: 604 NGKMHEA 610
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DA 61
+M++ + T Y S+L Y+ GN ++ +L EM GI D+ TY + AY +
Sbjct: 825 EMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREG 884
Query: 62 SDHEGI---DKILTM-MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK 108
+ E D+IL M L + + G+ G +D+A +L+
Sbjct: 885 NVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLR 935
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 122/252 (48%), Gaps = 5/252 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M ++G + N+++ +G + L+ +M E G + TY L+
Sbjct: 181 VDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCK 240
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L ME + N+ LD V Y+ + +G K G LD A + +E ++KG N
Sbjct: 241 SGQTALAMELLRKME-ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF--NEMEMKGITTN 297
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN+++ + G+ DD ++ ++ K+ + + +I S +K L AE++ +
Sbjct: 298 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 357
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + DT LID +C+ L+KA +V+ KG + +++++ L GY + +
Sbjct: 358 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 417
Query: 239 QIHKAVEAMKKV 250
+I +E +K+
Sbjct: 418 RIDDGLELFRKM 429
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 136/305 (44%), Gaps = 27/305 (8%)
Query: 5 RDLGLAR---TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
RD+ +R T + ++ + KT ++ + +L +ME GI ++ YT ++ +
Sbjct: 77 RDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRC 136
Query: 62 SD----HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ KI+ + +PN + ++T+ NG G + +AL ++ + E G
Sbjct: 137 RKLCLAFSAMGKIIK-LGYEPNT----ITFSTLINGLCLEGRVSEALELVDRMVEM--GH 189
Query: 118 K-----VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172
K +N+ N L L GK + + +L I ++ + + Y V++ + K
Sbjct: 190 KPDLITINTLVNG-LCLSGK--EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTAL 246
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A ++ + E + + D + +ID C++G L+ A NL N ++KG ++ ++ L
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIG 306
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
G+ + + ++ ++ K P+V + + +D F EG + AE + +
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKR-----KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH 361
Query: 293 KGFIP 297
+G P
Sbjct: 362 RGIAP 366
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 133/333 (39%), Gaps = 43/333 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM + + V Y+ ++ K G+ + +L +EME GIT + TY + + +
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 310
Query: 61 ASDHEGIDKILTMM---EADPNV-------------------------------ALDWVI 86
A + K+L M + +PNV A D +
Sbjct: 311 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 370
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIW-E 144
Y ++ +G+ K LDKA M+ KG N +N+++ Y K + DD L ++ +
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVS--KGCDPNIRTFNILINGYCKANRIDDGLELFRK 428
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ + V Y +I +L L A+++F+E S+ + + L+D C NG
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
EKA + + E+ + + + G S++ A + L L KP V
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD-----LFCSLPLKGVKPGV 543
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ + +G + AE + + G P
Sbjct: 544 KTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAP 576
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 115/283 (40%), Gaps = 14/283 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + G V Y +L + K+G L+ +MEE I D Y +
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ME + + + Y + G+ G D +L+ + IK K+N
Sbjct: 276 HGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGAKLLR---DMIK-RKIN 330
Query: 121 S---AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++V++ + K GK + + E+ + + Y ++I K + L+ A ++
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ S+ + R N LI+ YC+ ++ L L+G ++ L G+ +
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279
+++ A E +++++ K P++ + LD D G+
Sbjct: 451 LGKLNVAKELFQEMVSR-----KVPPNIVTYKILLDGLCDNGE 488
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 131/297 (44%), Gaps = 10/297 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++ D GL ++N +++ + G ++ EM+ G+ ++ T +S A
Sbjct: 106 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 165
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D +G + + M ++ V D Y + G +VG ++ A + +K +G K N+
Sbjct: 166 DLDGAETLHRRM-SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCG--RGMKPNAV 222
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ +++ + K G + +L + E+ ++ V+ Y +++ L + DL+SA I E
Sbjct: 223 VFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEM 282
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S L DT LID YC+ L+ A + + +G + ++ L +G + +
Sbjct: 283 RSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRS 342
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A + +++ A +P + +D F +GD+ ++ + +KG P
Sbjct: 343 ADAERVLGEMMEA-----GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKP 394
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 5/214 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM G+ VV+ ++ + K G+ E + L EM E G+ D TY ++ A
Sbjct: 210 EKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRA 269
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D + I+ M + + D V Y T+ +GY K LD +AM K +G ++
Sbjct: 270 RDLKSASGIVVEMRS-AGLRPDTVTYTTLIDGYCKEEELD--MAMEIKQNMVAEGVGLDE 326
Query: 122 A-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ K G+ D R+ E+ + ++ N Y VI + + D+++ ++ +E
Sbjct: 327 VTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 386
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+++ N +++ +C+ G ++ A+ L+N
Sbjct: 387 MQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLN 420
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 144/330 (43%), Gaps = 38/330 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G+ YNS++ + K E+ + + EM E + + +TY + Y+
Sbjct: 483 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 542
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + E D+ M + PNV IY + G+ K G + +A ++ + +
Sbjct: 543 AGEMEIADRYFNEMLSCGVLPNVG----IYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ 598
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V + Y+V++ + GK + I+ EL +K + Y ++IS K +++ A ++
Sbjct: 599 DVQT-YSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQL 657
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
EE + + D N LID C+ G +E+A+NL + + +G + ++ + GY +
Sbjct: 658 LEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCK 717
Query: 237 NSQIHKAVEAMKKVLA--------AYQTLVKWKPSVESLAACLDYFKD------------ 276
+ A + ++++L Y ++ + E LD F++
Sbjct: 718 SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSF 777
Query: 277 ---------EGDIGGAENFIELLNDKGFIP 297
G + A + +E + +K FIP
Sbjct: 778 NTLIEGYCKSGKLQEANHLLEEMIEKQFIP 807
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 122/297 (41%), Gaps = 10/297 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ +++N++L K G EK +M EM E G+ D TY + +
Sbjct: 345 EMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQ 404
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ ++L M+ +A + Y+ + NG + G L A+L+ E + G K N+
Sbjct: 405 NMARAFELLDEMKKR-KLAPTVLTYSVIINGLCRCGNLQGTNAILR--EMVMNGLKPNAV 461
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++T + K G+ ++ I E + ++ + Y ++I K +E A E
Sbjct: 462 VYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEM 521
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L + ID Y + G +E A+ N G +V + L G+ + +
Sbjct: 522 LERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNV 581
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A + +L+ + V++ + + G + A L +KG +P
Sbjct: 582 TEAFSVFRFILSR-----RVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLP 633
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 128/298 (42%), Gaps = 8/298 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ LA T + Y+ ++ + GN + ++++ EM NG+ + Y T ++A+A
Sbjct: 413 LDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 472
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E IL M + + D Y ++ G+ K +++A L + E+ +
Sbjct: 473 EGRVEESRMILERMR-EQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAH 531
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
+ Y + Y K G+ + R + + N G Y +I K ++ A +F
Sbjct: 532 T-YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRF 590
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S+ + D + + LI RNG + +A + + + KG + ++ L +G +
Sbjct: 591 ILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN 650
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ KA + ++++ + P + + +D G+I A+N + + +G P
Sbjct: 651 VDKASQLLEEM-----CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 703
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 115/247 (46%), Gaps = 9/247 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+M + G+ + Y+ +++ + + N + L+ EM++ + TY ++
Sbjct: 378 MQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCR 437
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +G + IL M + PN V+Y T+ + K G ++++ +L++ EQ
Sbjct: 438 CGNLQGTNAILREMVMNGLKPNA----VVYTTLMTAHAKEGRVEESRMILERMREQGILP 493
Query: 118 KVNSAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V YN ++ + K + ++ + E+ ++ ++ + Y I K ++E A++
Sbjct: 494 DV-FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRY 552
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E S + + I LI+ +C+ G + +A ++ + V+++ L G +
Sbjct: 553 FNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 612
Query: 237 NSQIHKA 243
N ++H+A
Sbjct: 613 NGKMHEA 619
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 10/224 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE-G 66
GL V Y +M+ Y K+ N L+ EM G+ D + Y L+ E
Sbjct: 700 GLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKA 759
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV--NSAYN 124
+D M+E V + T+ GY K G L +A +L EE I+ + + Y
Sbjct: 760 LDLFQEMLEKG---FASTVSFNTLIEGYCKSGKLQEANHLL---EEMIEKQFIPNHVTYT 813
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K G + R+W E+ ++ V Y +++ + ++ +FEE ++
Sbjct: 814 SLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAK 873
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+ D +ID YCR G + +A L + +KG + V ++
Sbjct: 874 GIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAY 917
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 13/261 (4%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
NS+L K E + M + + D YTY +SA+ + + ++L M
Sbjct: 184 NSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEM-G 242
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK 136
+ + + V Y + G + LLD+A+ LK+S + V Y + + G +K
Sbjct: 243 EKGCSPNLVTYNVIIGGLCRARLLDEAIE-LKRS--MVDKGLVPDLYTYDILINGFCMEK 299
Query: 137 ---DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ L + E+ +K Y +I ++ D+E A +I +E + + + I N
Sbjct: 300 RSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWN 359
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM----KK 249
L++ C+ G +EKA ++ KG E +++ L G+ + + +A E + K+
Sbjct: 360 TLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKR 419
Query: 250 VLAAYQTLVKWKPSVESLAAC 270
LA T++ + + L C
Sbjct: 420 KLAP--TVLTYSVIINGLCRC 438
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 107/244 (43%), Gaps = 7/244 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DA 61
+M + G + V YN ++ + ++ L M + G+ D YTY ++ + +
Sbjct: 240 EMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEK 299
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN- 120
E +L M+ D + + + Y + +G+ + G +++A + K E G + N
Sbjct: 300 RSREAKLMLLEMI--DVGLKPEPITYNALIDGFMRQGDIEQAFRI--KDEMVACGIEANL 355
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N +L K GK + L I E+ +K V+ + Y +I + ++ A ++ +E
Sbjct: 356 IIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDE 415
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + L + +I+ CR G L+ ++ + G + + + L T + + +
Sbjct: 416 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 475
Query: 240 IHKA 243
+ ++
Sbjct: 476 VEES 479
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 138/301 (45%), Gaps = 14/301 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T +++ + G EK L+ E GI + YTY T ++AY
Sbjct: 212 FRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVK 271
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G++ +L +M+ D V + V Y + K G + A + + E+ +
Sbjct: 272 QRDFSGVEGVLKVMKKD-GVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRER----GIE 326
Query: 121 SAYNVILTLYGKYGKKDDVLRIW----ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
S +V +L +K ++ R + EL +K + + Y +I + K+ ++ +AE +
Sbjct: 327 SDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEIL 386
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E +S+ + + N LID YCR G++++A + + + KG + V + +A+ + +
Sbjct: 387 MNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNR 446
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ +A + + +++ K S S +D + EG++ A+ ++ KG
Sbjct: 447 LKRYDEAKQWLFRMMEG-----GVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQ 501
Query: 297 P 297
P
Sbjct: 502 P 502
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 108/246 (43%), Gaps = 36/246 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRL----- 55
++ M+ G+ V Y +++L K G + L EM E GI D + Y + +
Sbjct: 282 LKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCR 341
Query: 56 ---------------------SAYADASDHEGIDKILTMMEAD--------PNVALDWVI 86
S+Y + +G+ K+ M A+ V + V+
Sbjct: 342 KGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV 401
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLR-IWEL 145
+ T+ +GY + G++D+A + E++ A V + N I + + + + D+ + ++ +
Sbjct: 402 FNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTC-NTIASCFNRLKRYDEAKQWLFRM 460
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+ VK+ Y N+I K ++E A+++F E S+ + + N +I YC+ G +
Sbjct: 461 MEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKI 520
Query: 206 EKAENL 211
++A L
Sbjct: 521 KEARKL 526
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G+ +TV Y +++ +Y K GN E+ L EM G+ + TY + AY
Sbjct: 459 RMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQG 518
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ K+ MEA DP D Y ++ +G +D+A+ + SE +KG
Sbjct: 519 KIKEARKLRANMEANGMDP----DSYTYTSLIHGECIADNVDEAMRLF--SEMGLKGLDQ 572
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSL 164
NS Y V+++ K GK D+ ++ E+ +K + N Y +I S+
Sbjct: 573 NSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGSM 619
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 135/319 (42%), Gaps = 51/319 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEG 66
G TV+YNSML+++ K G + + S++ EME+N D TY + Y A EG
Sbjct: 317 GYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEG 376
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126
+ I TM V + + Y TV + YGK G D AL + K ++ V + YN +
Sbjct: 377 MAVIDTMTSK--GVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYT-YNSV 433
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ-AL 185
L + GK + +DV+++ K LN N + W + A+
Sbjct: 434 LAMLGKKSRTEDVIKVLCEMK-----LNGCAPNRAT-----------------WNTMLAV 471
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY-RQNSQIHKAV 244
C + N++ N +L + +N G E ++ L + Y R S++ A
Sbjct: 472 CSEEGKHNYV------NKVLREMKNC-------GFEPDKDTFNTLISSYARCGSEVDSA- 517
Query: 245 EAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD 302
Y +VK + P V + A L+ GD AE+ I+ + KGF P +
Sbjct: 518 -------KMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSY 570
Query: 303 KLLDNVQNGKSNLETLREL 321
LL + + N+ + ++
Sbjct: 571 SLLLHCYSKAGNVRGIEKV 589
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 139/333 (41%), Gaps = 41/333 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
KM+DLG A YNS+L + K E + ++ EM+ NG +R T+ T L+ ++
Sbjct: 415 FSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSE 474
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG---------------------- 98
H ++K+L M+ + D + T+ + Y + G
Sbjct: 475 EGKHNYVNKVLREMK-NCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVT 533
Query: 99 ---LLDKALAML---KKSEE-----QIKGAKVN-SAYNVILTLYGKYGKKDDVLRIW-EL 145
L ALA K +E Q KG K N ++Y+++L Y K G + ++ E+
Sbjct: 534 TYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEI 593
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
Y V R ++ S K L E+ F++ + D + N ++ ++ RN +
Sbjct: 594 YDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMF 653
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE 265
KA +++ G + ++ ++ L Y + + KA E +K + Q V +P V
Sbjct: 654 SKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGI----QNSVP-EPDVV 708
Query: 266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
S + F +G + A + + KG PT
Sbjct: 709 SYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPT 741
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 111/262 (42%), Gaps = 6/262 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D ++ YN + Y + G ++ +++ M G+ + TY T + AY
Sbjct: 345 LKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGK 404
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + ++ + M+ D A + Y +V GK + + +L E ++ G N
Sbjct: 405 AGREDDALRLFSKMK-DLGCAPNVYTYNSVLAMLGKKSRTEDVIKVL--CEMKLNGCAPN 461
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
A +N +L + + GK + V ++ E+ + + + +ISS + + K++
Sbjct: 462 RATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYG 521
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E N L++ G + AE+++ + KG + + S+ L Y +
Sbjct: 522 EMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAG 581
Query: 239 QIHKAVEAMKKVLAAYQTLVKW 260
+ + +E ++K + Q W
Sbjct: 582 NV-RGIEKVEKEIYDGQVFPSW 602
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/247 (19%), Positives = 111/247 (44%), Gaps = 13/247 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G YN++L G+++ +S++ +M+ G + +Y L Y+ A + GI
Sbjct: 527 GFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGI 586
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLL---DKALAMLKKSEEQIKGAKVNSAYN 124
+K+ + D V W++ T+ K L ++A L+K + +NS
Sbjct: 587 EKVEKEI-YDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINS--- 642
Query: 125 VILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+L+++ + + K ++L +++ ++ Y ++ ++ D+ AE++ + +
Sbjct: 643 -MLSMFSRNKMFSKAREMLHF--IHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQ 699
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D N +I +CR GL+++A +++ KG + + ++ +GY
Sbjct: 700 NSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFD 759
Query: 242 KAVEAMK 248
+A E ++
Sbjct: 760 EANEVIR 766
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++ G VV NSML ++ + F K ++H + E G+ + +TY + Y
Sbjct: 627 QLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVRED 686
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ +++L ++ +P+V V Y TV G+ + GL+ +A+ +L SE KG +
Sbjct: 687 ECWKAEEVLKGIQNSVPEPDV----VSYNTVIKGFCRKGLMQEAIRVL--SEMTTKGIQP 740
Query: 120 N-SAYNVILTLYGK---YGKKDDVLRI 142
YN L+ Y + + ++V+R
Sbjct: 741 TIVTYNTFLSGYAGMELFDEANEVIRF 767
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 12/289 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + G+ YN++L + G +E+ + L EMEE D Y+Y + L AYA+A
Sbjct: 477 KRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANA 536
Query: 62 SDHEGIDKILTMMEADPNVALDWVI--YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + + + ++ +W++ V + + +KA L++ + +
Sbjct: 537 KRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSL---DI 593
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N N ++++YGK V +I L K+ A+ + Y +++ +L D E E I
Sbjct: 594 N-VLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILT 652
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E +S + D N +I Y R G +++A L + K G + V ++ Y NS
Sbjct: 653 EIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNS 712
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+A+E L Y KP+ + + ++ + G + A+ F+
Sbjct: 713 MFEEAIE-----LVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFV 756
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 113/255 (44%), Gaps = 11/255 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G+A YN+++ + +++ + EM+ +G D+ T+ + L Y A
Sbjct: 234 MKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARR 293
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
H+ +++ ME P+V V Y ++ + Y K GLL++A+A+ K E ++KG K +
Sbjct: 294 HDEAIEVIQEMERVGCPPSV----VTYNSLISSYVKDGLLEQAVAL--KQEMEVKGIKPD 347
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y +++ + GK D + + E+ + K Y +I +F+
Sbjct: 348 VVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFD 407
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S D N L+ V+ +NGL + + K G ++ L + Y +
Sbjct: 408 ELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 467
Query: 239 QIHKAVEAMKKVLAA 253
A++ K+++ A
Sbjct: 468 LFDLAMQIYKRMMEA 482
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ + + YNS++ +Y + G+ EK ++++ E++ +G+ DRY+Y T + AY
Sbjct: 619 MKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQ 678
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ ++ + M+ + D V Y Y + ++A+ +++ Q G K N
Sbjct: 679 MKEASRLFSEMKCS-GLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQ--GCKPNERT 735
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY 157
YN I+ Y + GK D +++ + L+ GY
Sbjct: 736 YNSIVEGYCRNGKLTDA----KIFVSNLPQLHPGY 766
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 23/222 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M +G + V YNS++ Y K G E+ +L EME GI D TY T +S
Sbjct: 301 IQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGL-- 358
Query: 61 ASDHEG-IDKILTMME------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
D G ID + + PN+ Y + +G G + +A+ ++
Sbjct: 359 --DRAGKIDAAIVEYDEMVRNGCKPNLC----TYNALIKMHGVRGKFPEMMAVF----DE 408
Query: 114 IKGAKVNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDD 169
++ A +N +L ++G+ G +V +++ KKA + + Y ++ISS +
Sbjct: 409 LRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 468
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ A +I++ + D N ++ R G E+AE L
Sbjct: 469 FDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 510
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G V +NS+L +Y K ++ ++ EME G TY + +S+Y
Sbjct: 268 EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDG 327
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKVN- 120
E + ME + D V Y T+ +G + G +D A+ + +E ++ G K N
Sbjct: 328 LLEQAVALKQEMEVK-GIKPDVVTYTTLISGLDRAGKIDAAIV---EYDEMVRNGCKPNL 383
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIFEE 179
YN ++ ++G GK +++ +++ + A V + N + ++ + L+S +F+E
Sbjct: 384 CTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKE 443
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ + LI Y R GL + A
Sbjct: 444 MKKAGYIPERDTYVSLISSYSRCGLFDLA 472
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 143/322 (44%), Gaps = 16/322 (4%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G+ TVVYN +L + + + L+++ EM E GI D T+ T + A A H+
Sbjct: 144 FGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRA--HQV 201
Query: 67 IDKILTMME-ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+L + E + VA D + T+ G+ + G + AL +K ++ + NV
Sbjct: 202 RTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALR-VKARMLEMGCSPTKVTVNV 260
Query: 126 ILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ Y K G+ +D L I + + Y ++ L + + A K+ + +
Sbjct: 261 LINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEG 320
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N +++ C+NG LE+A+ ++N +G + ++ L +++ +A+
Sbjct: 321 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEAL 380
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DK 303
+ ++V TL P V + ++ GD A E + G P ++ +
Sbjct: 381 DLARQV-----TLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNT 435
Query: 304 LLDNVQN----GKSNLETLREL 321
L+DN+ + GK+ L+ L+E+
Sbjct: 436 LIDNLCSLGKLGKA-LDLLKEM 456
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 15/244 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGID--KILT 72
YN ++ K G E+ ++++M E G D T+ T + A + E +D + +T
Sbjct: 328 YNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVT 387
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI---LT 128
+ P+V + + N KVG D LA+ E + G + YN + L
Sbjct: 388 LKGLSPDV----YTFNILINALCKVG--DPQLALRLFEEMKSSGCTPDEVTYNTLIDNLC 441
Query: 129 LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
GK GK D+L+ E+ Y +I L K +E AE++F++ + Q + +
Sbjct: 442 SLGKLGKALDLLK--EMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 499
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
N LID C++ ++ A L++ +G + + ++ + T Y + I KA + ++
Sbjct: 500 AITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQ 559
Query: 249 KVLA 252
+ A
Sbjct: 560 TMTA 563
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 133/331 (40%), Gaps = 47/331 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M ++G + T V N ++ Y K G E + + NG D+ TY T ++
Sbjct: 245 RMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNG 304
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------ 113
K++ +M DP+V Y V N K G L++A +L + E+
Sbjct: 305 HVGHALKVMDVMVQEGHDPDV----FTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDI 360
Query: 114 ----------IKGAKVNSA------------------YNVILTLYGKYGKKDDVLRIWEL 145
G ++ A +N+++ K G LR++E
Sbjct: 361 TTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEE 420
Query: 146 YKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
K + + Y +I +L L L A + +E ES T N +ID C+
Sbjct: 421 MKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMR 480
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
+E+AE + + L+G + ++ L G ++ +I A + + ++++ +P+
Sbjct: 481 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISE-----GLQPNN 535
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + L ++ +GDI A + ++ + GF
Sbjct: 536 ITYNSILTHYCKQGDIKKAADILQTMTANGF 566
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 88/205 (42%), Gaps = 5/205 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G R+TV YN+++ K E+ + + +M+ GI+ + T+ T +
Sbjct: 453 LKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 512
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +++++ M ++ + + + Y ++ Y K G + KA +L+ G +V+
Sbjct: 513 DKRIDDANQLISQMISE-GLQPNNITYNSILTHYCKQGDIKKAADILQTMTAN--GFEVD 569
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y ++ K G+ L++ + K ++ Y VI SL + ++ A +F
Sbjct: 570 VVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFR 629
Query: 179 EWESQALCYDTRIPNFLIDVYCRNG 203
E D + CR G
Sbjct: 630 EMTEVGEPPDAFTYKIVFRGLCRGG 654
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 113/298 (37%), Gaps = 42/298 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ G V YN+++ G K L+ EME G TY T +
Sbjct: 418 FEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCK 477
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E +++ M+ ++ + + + T+ +G K +D A ++ S+ +G + N
Sbjct: 478 KMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKRIDDANQLI--SQMISEGLQPN 534
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN ILT Y K G KKA +L N
Sbjct: 535 NITYNSILTHYCKQGD----------IKKAADILQTMTAN-------------------G 565
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+E + Y T LI+ C+ G + A L+ ++KG K++ + + +
Sbjct: 566 FEVDVVTYGT-----LINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNN 620
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A+ +++ + + + C + G I A +F+ + DKGFIP
Sbjct: 621 TRDAMNLFREMTEVGEPPDAFTYKIVFRGLC----RGGGSIREAFDFLLEMVDKGFIP 674
>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 789
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 126/305 (41%), Gaps = 40/305 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ G+ V YNS++K Y E L+ + G D+ +Y T +
Sbjct: 289 LERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCK 348
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + ++ M D N+ D V Y T+ + K G D ALA LK++E+ KG ++
Sbjct: 349 EKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAED--KGFHID 406
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
GY ++ S + ++ A+ + +
Sbjct: 407 KV---------------------------------GYSAIVHSFCQKGRMDEAKSLVIDM 433
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S++ D ++D +CR G +++A+ ++ G + + S+ L G +
Sbjct: 434 YSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSG-- 491
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
K++EA + + + + W P+ + + F+ EG + A + + +KGF PT +
Sbjct: 492 -KSLEAREMINVSEEHW--WTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPV 548
Query: 301 QDKLL 305
+ LL
Sbjct: 549 EINLL 553
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 135/305 (44%), Gaps = 11/305 (3%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G+ TVVYN +L + + + L+S+ EM GI D T+ T + A A H+
Sbjct: 140 FGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRA--HQV 197
Query: 67 IDKILTMME-ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+L + E + VA D + T+ G+ + G ++ AL +K ++ + NV
Sbjct: 198 RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR-VKARMLEMGCSATKVTVNV 256
Query: 126 ILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ Y K G+ +D L I + + Y ++ L + D + A K+ + +
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 316
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N +++ C+NG LE+A+ ++N +G + ++ L +++ +A+
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 376
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DK 303
+ ++V T+ P V + ++ GD A E + + G P ++ +
Sbjct: 377 DLARQV-----TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 431
Query: 304 LLDNV 308
L+DN+
Sbjct: 432 LIDNL 436
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 11/242 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMM 74
YN ++ K G E+ ++++M + G D T+ T ++A + E +D L
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD--LARQ 381
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI---LTLY 130
V+ D + + N KVG D LA+ E + G + YN + L
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVG--DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSL 439
Query: 131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
GK GK D+L+ E + Y +I L K +E AE++F++ + Q + +
Sbjct: 440 GKLGKALDLLKDMESTGCPRSTIT--YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 497
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N LID C++ ++ A L+N +G + + ++ + T Y + I KA + ++ +
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557
Query: 251 LA 252
A
Sbjct: 558 TA 559
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 118/302 (39%), Gaps = 50/302 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M++ G V YN+++ G K L+ +ME G TY T +
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E +++ M+ ++ + + + T+ +G K +D A ++ + + G + N
Sbjct: 474 KMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKKIDDAFELINQMISE--GLQPN 530
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN ILT Y K G D++ A I E
Sbjct: 531 NITYNSILTHYCKQG----------------------------------DIKKAADILET 556
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-YYLATGYRQNS 238
+ D LI+ C+ G + A ++ ++KG K++ L + +R+N+
Sbjct: 557 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 616
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY---FKDEGDIGGAENFIELLNDKGF 295
++ L+ ++ + + ++L + + + G I A +F+ + DKGF
Sbjct: 617 --------IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 668
Query: 296 IP 297
IP
Sbjct: 669 IP 670
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 115/257 (44%), Gaps = 11/257 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K + L +VYNS+++ Y + GN E +++L+ +MEE G + Y T L+ +A+
Sbjct: 110 FEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAE 169
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
D E ++A P A Y + + K G + KAL +L++ ++ G
Sbjct: 170 IRDEEKCLSFFHRLKACGLSPTAA----TYGCIVKLFTKAGNMAKALDILEEMDKH--GV 223
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N Y +I+ Y + G ++WE + +K Y ++ + K ++ A
Sbjct: 224 SPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALG 283
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E E+ L ++D Y + G ++KA + + K G V S+ L +G
Sbjct: 284 VLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLA 343
Query: 236 QNSQIHKAVEAMKKVLA 252
+ Q+ A + ++LA
Sbjct: 344 KARQMENARLMLNEMLA 360
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/334 (19%), Positives = 131/334 (39%), Gaps = 41/334 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR + +Y S++ Y + + E + EM GI + +C+ +S YA
Sbjct: 40 FEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYAS 99
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKG--- 116
A ++E + +A+ N+ ++Y ++ Y + G ++ A+L + EE+ +G
Sbjct: 100 AGNNEAAEHWFEKFKAE-NLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLG 158
Query: 117 ------------------------------AKVNSAYNVILTLYGKYGKKDDVLRIW-EL 145
+ + Y I+ L+ K G L I E+
Sbjct: 159 LYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM 218
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
K V Y ++ + D +A K++E+ S L D I N L+ +C+ G +
Sbjct: 219 DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRM 278
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE 265
+KA ++ + + ++++ + GY + I KA+E ++ A +P V
Sbjct: 279 DKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTA-----GLRPGVV 333
Query: 266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
S + L + A + + G +P +
Sbjct: 334 SYNSLLSGLAKARQMENARLMLNEMLANGVVPNE 367
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 111/249 (44%), Gaps = 13/249 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G++ ++Y ++ Y + G+F + +M G+ D Y + A+
Sbjct: 215 LEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCK 274
Query: 61 ASDHEGIDKILTMME-ADPNVALDWV-IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A +DK L ++E + N L + Y ++ +GY K G + KAL + ++IK A
Sbjct: 275 AGR---MDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVF----DRIKTAG 327
Query: 119 VNS---AYNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ +YN +L+ K + ++ L + E+ V Y + + D+E A
Sbjct: 328 LRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAF 387
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+F+ + + L D L+ C++G +++A + G + + ++ + G+
Sbjct: 388 GMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGW 447
Query: 235 RQNSQIHKA 243
+ ++ KA
Sbjct: 448 ARKGELSKA 456
>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 662
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 128/295 (43%), Gaps = 10/295 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++R T NS++K + K G E+L + +M+ENGI YTY ++ A
Sbjct: 176 SEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSA 235
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ +++ +ME+ + D V Y T+ GY K G KAL L+ E + A +
Sbjct: 236 MFVDSAERVFEVMESG-RIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKIT 294
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+I Y V E+ +K ++V + + VI L K L +FE
Sbjct: 295 YMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMI 354
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + I LID Y + G +E A L++ +G V ++ + G +N ++
Sbjct: 355 RKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVE 414
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESL--AACLDYFKDEGDIGGAENFIELLNDKG 294
+A++ +QT ++ S+ ++ +D G + AE E +++KG
Sbjct: 415 EAMD-------YFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG 462
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 121/253 (47%), Gaps = 13/253 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++ M GL + Y +M++ Y +F +L EM+E G+ + + +
Sbjct: 280 LRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCK 339
Query: 60 DASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +EG M+ + PNVA IY + +GY K G ++ A+ +L + ++
Sbjct: 340 EGKLNEGYAVFENMIRKGSKPNVA----IYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNP 395
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKI 176
V + Y+V++ K G+ ++ + ++ + +N+ Y ++I L K ++ AE++
Sbjct: 396 DVVT-YSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERL 454
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLATGYR 235
FEE + D+ N LID + ++G +++A L E+ +G + V ++ L +G
Sbjct: 455 FEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMF 514
Query: 236 QNSQIHKAVEAMK 248
+ H+ EA+K
Sbjct: 515 KE---HRNEEALK 524
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 113/277 (40%), Gaps = 42/277 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q R GLA ++ Y+S++ K G ++ + L EM E G T D Y Y +A D
Sbjct: 420 FQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCY----NALID 475
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + K G +D+ALA+ K+ EE+ +
Sbjct: 476 A--------------------------------FTKHGKVDEALALFKRMEEEEGCDQTV 503
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++++ K + ++ L++W++ K + R + + L + A KI +E
Sbjct: 504 YTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDE 563
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ D + +I+ C+ G +++A L + +GRE+ + + R+ +
Sbjct: 564 LAPMGVILDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGK 622
Query: 240 IHKAVEAM-KKVLAAYQTLVKWKPSVES---LAACLD 272
A++ M K+ Y+ + K V+ L C D
Sbjct: 623 ADLAMKLMHSKIGIGYERMGSVKRRVKFTTLLETCFD 659
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 121/248 (48%), Gaps = 7/248 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM + G+ + V Y+ ++ + K GN E D + +E + Y Y + AY
Sbjct: 352 VRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQ 411
Query: 61 ASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A + + + ++ ME + + LD IY T+ +GY + +K L + K+ +E V
Sbjct: 412 ACNMDRAEALVREMEEEGIDAPLD--IYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSV 469
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIF 177
+ Y ++ +Y K GK L + ++ K +V + +N Y +I+ LKL D +A +F
Sbjct: 470 IT-YGCLINMYTKIGKVSKALEVSKMMK-SVGIKHNMKTYSMLINGFLKLKDWTNAFAVF 527
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E+ L D + N +I +C G +++A ++V + + +++ + G+ +
Sbjct: 528 EDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARA 587
Query: 238 SQIHKAVE 245
++ +A+E
Sbjct: 588 GEMRRALE 595
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 15/247 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T +N+++ + EK ++ EM G++ D +TY T + YA D
Sbjct: 600 MRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGD 659
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T M + + LD Y + K G + ALA+ ++ Q K + Y
Sbjct: 660 TGKAFEYFTKMRNE-GLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQ-KIPRNTFVY 717
Query: 124 NVILTLYGKYGKKDDVLRIWE-------LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
N+++ + + G IWE + ++ V+ + Y + I++ K D+ A K
Sbjct: 718 NILIDGWARRGD------IWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKT 771
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
EE E+ + + + LI + L EKA + KL G + ++ L T
Sbjct: 772 MEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLMTSLLS 831
Query: 237 NSQIHKA 243
+ + +A
Sbjct: 832 RATVAEA 838
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R T VYN ++ + + G+ + LM +M + G+ D +TY + ++A A
Sbjct: 703 REMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKA 762
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D K + MEA PNV Y T+ +G+ L +KAL+ + E ++ G K
Sbjct: 763 GDMLRATKTMEEMEAAGVKPNVK----TYTTLIHGWANASLPEKALSCFE--ELKLAGLK 816
Query: 119 VNSA-YNVILT 128
+ A Y+ ++T
Sbjct: 817 PDKAVYHCLMT 827
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 110/255 (43%), Gaps = 19/255 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V+YN+++K + GN ++ ++ EM++ T+ + +A A +
Sbjct: 534 GLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRA 593
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE--EQIKGAKVNSAYNV 125
+I MM + A V +GL++K M K E +++ A V+ +
Sbjct: 594 LEIFDMMRRSGCIPTVHTFNALV------LGLVEKR-KMEKAVEILDEMALAGVSPDEHT 646
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFE 178
T+ Y D + +E + K+ N G Y ++ + K ++SA +
Sbjct: 647 YTTIMHGYAALGDTGKAFEYF---TKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTR 703
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E +Q + +T + N LID + R G + +A +L+ +G + + ++ +
Sbjct: 704 EMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAG 763
Query: 239 QIHKAVEAMKKVLAA 253
+ +A + M+++ AA
Sbjct: 764 DMLRATKTMEEMEAA 778
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 135/305 (44%), Gaps = 11/305 (3%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G+ TVVYN +L + + + L+S+ EM GI D T+ T + A A H+
Sbjct: 140 FGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRA--HQV 197
Query: 67 IDKILTMME-ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+L + E + VA D + T+ G+ + G ++ AL +K ++ + NV
Sbjct: 198 RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR-VKARMLEMGCSATKVTVNV 256
Query: 126 ILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ Y K G+ +D L I + + Y ++ L + D + A K+ + +
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 316
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N +++ C+NG LE+A+ ++N +G + ++ L +++ +A+
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 376
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DK 303
+ ++V T+ P V + ++ GD A E + + G P ++ +
Sbjct: 377 DLARQV-----TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 431
Query: 304 LLDNV 308
L+DN+
Sbjct: 432 LIDNL 436
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 11/242 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMM 74
YN ++ K G E+ ++++M + G D T+ T ++A + E +D L
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD--LARQ 381
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI---LTLY 130
V+ D + + N KVG D LA+ E + G + YN + L
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVG--DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSL 439
Query: 131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
GK GK D+L+ E + Y +I L K +E AE++F++ + Q + +
Sbjct: 440 GKLGKALDLLKDMESTGCPRSTIT--YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 497
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N LID C++ ++ A L+N +G + + ++ + T Y + I KA + ++ +
Sbjct: 498 TFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557
Query: 251 LA 252
A
Sbjct: 558 TA 559
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 118/302 (39%), Gaps = 50/302 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M++ G V YN+++ G K L+ +ME G TY T +
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E +++ M+ ++ + + + T+ +G K +D A ++ + + G + N
Sbjct: 474 KMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKKIDDAFGLINQMISE--GLQPN 530
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN ILT Y K G D++ A I E
Sbjct: 531 NITYNSILTHYCKQG----------------------------------DIKKAADILET 556
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-YYLATGYRQNS 238
+ D LI+ C+ G + A ++ ++KG K++ L + +R+N+
Sbjct: 557 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 616
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY---FKDEGDIGGAENFIELLNDKGF 295
++ L+ ++ + + ++L + + + G I A +F+ + DKGF
Sbjct: 617 --------IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 668
Query: 296 IP 297
IP
Sbjct: 669 IP 670
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 135/305 (44%), Gaps = 11/305 (3%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G+ TVVYN +L + + + L+S+ EM GI D T+ T + A A H+
Sbjct: 48 FGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRA--HQV 105
Query: 67 IDKILTMME-ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+L + E + VA D + T+ G+ + G ++ AL +K ++ + NV
Sbjct: 106 RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR-VKARMLEMGCSATKVTVNV 164
Query: 126 ILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ Y K G+ +D L I + + Y ++ L + D + A K+ + +
Sbjct: 165 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 224
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N +++ C+NG LE+A+ ++N +G + ++ L +++ +A+
Sbjct: 225 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 284
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DK 303
+ ++V T+ P V + ++ GD A E + + G P ++ +
Sbjct: 285 DLARQV-----TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 339
Query: 304 LLDNV 308
L+DN+
Sbjct: 340 LIDNL 344
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 11/242 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMM 74
YN ++ K G E+ ++++M + G D T+ T ++A + E +D L
Sbjct: 232 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD--LARQ 289
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI---LTLY 130
V+ D + + N KVG D LA+ E + G + YN + L
Sbjct: 290 VTVKGVSPDVYTFNILINALCKVG--DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSL 347
Query: 131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
GK GK D+L+ E + Y +I L K +E AE++F++ + Q + +
Sbjct: 348 GKLGKALDLLKDMESTGCPRSTIT--YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 405
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N LID C++ ++ A L+N +G + + ++ + T Y + I KA + ++ +
Sbjct: 406 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 465
Query: 251 LA 252
A
Sbjct: 466 TA 467
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 118/302 (39%), Gaps = 50/302 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M++ G V YN+++ G K L+ +ME G TY T +
Sbjct: 322 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 381
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E +++ M+ ++ + + + T+ +G K +D A ++ + + G + N
Sbjct: 382 KMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKKIDDAFELINQMISE--GLQPN 438
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN ILT Y K G D++ A I E
Sbjct: 439 NITYNSILTHYCKQG----------------------------------DIKKAADILET 464
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-YYLATGYRQNS 238
+ D LI+ C+ G + A ++ ++KG K++ L + +R+N+
Sbjct: 465 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 524
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY---FKDEGDIGGAENFIELLNDKGF 295
++ L+ ++ + + ++L + + + G I A +F+ + DKGF
Sbjct: 525 --------IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 576
Query: 296 IP 297
IP
Sbjct: 577 IP 578
>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 918
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 118/247 (47%), Gaps = 5/247 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++ G+ T V Y+ ++ + K G + D E +E + + TY + + A+
Sbjct: 332 VRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSIIYAHCQ 391
Query: 61 ASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + + ++ ME + +D IY T+ +GY +G +K L + + +E V
Sbjct: 392 TCNMDRAEALVREMEVQGIDAPID--IYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSV 449
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y ++ LY K GK L+I ++ K +K Y +I+ LKL D +A +FE
Sbjct: 450 IS-YGCLINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFE 508
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
++ L D + N +I +C +++A +V + + +++ + G+ +
Sbjct: 509 DFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAG 568
Query: 239 QIHKAVE 245
++ +A+E
Sbjct: 569 EMRRALE 575
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R T VYN ++ + + G+ + LM +M + G+ D +TY + ++A A
Sbjct: 683 KEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKA 742
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + +I+ MEA PN+ Y T+ NG+ + + +KAL+ E++K A+
Sbjct: 743 GDMQKATEIIQEMEAFGIKPNLK----TYTTLINGWARASMPEKALSCF----EEMKLAE 794
Query: 119 V---NSAYNVILT 128
+ +AY+ ++T
Sbjct: 795 LKPDKAAYHCLMT 807
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 17/222 (7%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T YN+++ + K +++ +M G+ + +TY T + YA D
Sbjct: 580 MRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGD 639
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
E + +++ + + +D Y + K G + ALA+ K E K N+
Sbjct: 640 TEKAFQYFSVLRNE-GLEIDVYTYEALLKSCCKSGRMQSALAVTK--EMSAKNIPRNTFV 696
Query: 123 YNVILTLYGKYGKKDDVLRIWE-------LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
YN+++ + + G +WE + K+ V + Y + +++ K D++ A +
Sbjct: 697 YNILIDGWARRGD------VWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATE 750
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
I +E E+ + + + LI+ + R + EKA + KL
Sbjct: 751 IIQEMEAFGIKPNLKTYTTLINGWARASMPEKALSCFEEMKL 792
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 53/314 (16%), Positives = 119/314 (37%), Gaps = 33/314 (10%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y M+K Y + G+ M+ GI + Y + + AYA D E + M+
Sbjct: 277 YGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMK 336
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
+ + + V Y+ + G+ K+G D A K+++E++ + Y I+ + +
Sbjct: 337 EE-GIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVT-YGSIIYAHCQTCN 394
Query: 136 KDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
D + E+ + + + Y ++ + + E +F+ +
Sbjct: 395 MDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVISYGC 454
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV--------EA 246
LI++Y + G + KA + K+ G + ++K++ L G+ + A +
Sbjct: 455 LINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDG 514
Query: 247 MKKVLAAYQTLV----------------------KWKPSVESLAACLDYFKDEGDIGGAE 284
+K + Y ++ +++P+ + + F G++ A
Sbjct: 515 LKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRAL 574
Query: 285 NFIELLNDKGFIPT 298
+++ G IPT
Sbjct: 575 EIFDMMRRSGCIPT 588
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/266 (18%), Positives = 111/266 (41%), Gaps = 23/266 (8%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V+YN+++ + N ++ ++ +M++ T+ + +A A +
Sbjct: 514 GLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRA 573
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDK-----ALAMLKKSEEQIKGAKVNS- 121
+I MM + A + +GL++K A+A+L + + G N
Sbjct: 574 LEIFDMMRRSGCIPTVHTYNALI------LGLVEKRKMAKAVAIL--DQMNVAGVGPNEH 625
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++ Y G + + + + + + +++ Y ++ S K ++SA + +E
Sbjct: 626 TYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEM 685
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ + +T + N LID + R G + +A +L+ + +G + ++ + +
Sbjct: 686 SAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDM 745
Query: 241 HKAVE--------AMKKVLAAYQTLV 258
KA E +K L Y TL+
Sbjct: 746 QKATEIIQEMEAFGIKPNLKTYTTLI 771
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQ+MR G+ Y S + K G+ +K ++ EME GI + TY T ++ +A
Sbjct: 717 MQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLINGWAR 776
Query: 61 ASDHE 65
AS E
Sbjct: 777 ASMPE 781
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/394 (21%), Positives = 156/394 (39%), Gaps = 64/394 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR G V YN ++ + G + ++ + G D +Y T L
Sbjct: 203 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 262
Query: 61 ASDHEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG--- 116
A E ++++ MME N + V + + + + G++++A+ +L EQ+ G
Sbjct: 263 AKRWEDVEELFAEMMEK--NCMPNEVTFDMLVRFFCRGGMVERAIQVL----EQMSGHGC 316
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLL 165
A + N+++ K G+ DD A + LNN Y V+ L
Sbjct: 317 AANTTLCNIVINTICKQGRVDD----------AFQFLNNMGSYGCSPDTISYTTVLKGLC 366
Query: 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225
+ + E A+++ +E + + N I + C+ GL+E+A L+ G E+++
Sbjct: 367 RAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIV 426
Query: 226 SWYYLATGYRQNSQIHKAVE-----AMKKVLAAYQTLVK--------------------- 259
++ L G+ ++ A+E K Y TL+
Sbjct: 427 TYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK 486
Query: 260 -WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLDNVQ---NGKSN 314
P+V + + +F +G + A +E + + G P + + LLD + N +
Sbjct: 487 DCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEA 546
Query: 315 LETLRELYGNSLAGNEETLSGPEGDTS--DLIEE 346
LE L L N ++ + T S G S D +EE
Sbjct: 547 LELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEE 580
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 132/297 (44%), Gaps = 13/297 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V Y+ ++ K G + + M + G+ + TY T L YA
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + D +++ + Y G +D+A+ + K +Q G N
Sbjct: 349 KGALVEMHGLLDLMVRN-GIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQ--GLNPN 405
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D + +E + + + N Y ++I L + E AE++
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 465
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C +T N +ID +C+ G + ++E L G + +V ++ L GY
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAG 525
Query: 239 QIHKAVEAMKKVLAA--------YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ +A++ + +++ Y TL+ + + L FK+ G + + I
Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 582
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 5/210 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M +GL TV Y++++ Y K E L EME +G++ D TY L
Sbjct: 534 LSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ K L + + ++ Y + +G K L D AL M + + K+
Sbjct: 594 -TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL--CLMDLKLE 650
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFE 178
+ +N+++ K G+ D+ ++ + V N YR + +++ LE +++F
Sbjct: 651 ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFL 710
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E D+ + NF++ + G + +A
Sbjct: 711 SMEDNGCTVDSGMLNFIVRELLQRGEITRA 740
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G V Y +++ ++K G+ +K S HEM + GI D TY + ++A A
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
+ ++L M + V D + Y ++ +GY G +A+ LKK
Sbjct: 248 DKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 4/208 (1%)
Query: 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD--PNVALDWVIY 87
+ +D ++ M E G + ++Y L D + + ++L MM D D V Y
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LY 146
TV NG+ K G DKA + + ++ V + YN I+ K D + + +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVT-YNSIIAALCKAQAMDKAMEVLNTMV 258
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
K V Y +++ + A ++ S + D + L+D C+NG
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGY 234
+A + + +G + + ++ L GY
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGY 346
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 128/286 (44%), Gaps = 14/286 (4%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
++Y +++ Y + N +K ++L+ EMEE GI Y T + Y D DK L +
Sbjct: 19 IIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDE---DKCLLV 75
Query: 74 MEADPNVALD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLY 130
E L+ + Y + N Y K+G + KAL + K+ E G K N Y++++ +
Sbjct: 76 FERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHA--GIKHNMKTYSMLINGF 133
Query: 131 GKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K + I+E L K +K Y N+I++ + ++ A +E + Q T
Sbjct: 134 LKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTT 193
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
R +I + R G ++KA ++ + ++ G V ++ L G + ++ KA + + +
Sbjct: 194 RTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDE 253
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ TL P+ + + + GD G A + L D+G
Sbjct: 254 M-----TLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGL 294
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/335 (18%), Positives = 139/335 (41%), Gaps = 47/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ ++ GL + + Y ++ LY K G K + EME GI ++ TY ++ +
Sbjct: 76 FERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLK 135
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D I + D + D V+Y + + +G +D+A+ +K+ ++Q +
Sbjct: 136 LKDWANAFAIFEDLIKD-GIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQ-RHKPTT 193
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
+ I+ + + G+ L ++++ + + + + Y +I L++ +E AE+I +E
Sbjct: 194 RTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDE 253
Query: 180 W------------------------ESQALCYDTRIPN--FLIDVY---------CRNGL 204
+A Y T++ + +DVY C++G
Sbjct: 254 MTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGR 313
Query: 205 LEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
++ A L +++ + I ++ Y L G+ + + +A + M+++ +P
Sbjct: 314 MQSA--LAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE-----GVQP 366
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + + ++ GD+ A IE + G P
Sbjct: 367 DIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKP 401
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 10/131 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R T +YN ++ + + G+ + LM +M+ G+ D +TY + ++A + A
Sbjct: 322 KEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKA 381
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + K + M++ PNV Y T+ NG+ + L +KAL+ + E ++ G K
Sbjct: 382 GDMQRATKTIEEMKSVGVKPNVK----TYTTLINGWARASLPEKALSCFE--EMKLSGLK 435
Query: 119 VNSA-YNVILT 128
+ A Y+ ++T
Sbjct: 436 PDRAVYHCLMT 446
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 15/275 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+RD G TV YN ++ Y + + ++ ++M+E G DR TYCT + +A A
Sbjct: 391 VRD-GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGF 449
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ + M+A ++ D Y+ + N GK G L A + + +Q G N
Sbjct: 450 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ--GCTPNLVT 506
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+++ L+ K + L+++ ++ + Y V+ L LE AE +F E +
Sbjct: 507 YNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ 566
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D + L+D++ + G +EKA G +V + L + + + ++I
Sbjct: 567 QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIA 626
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVES----LAACLD 272
+A E ++ +LA + +PS+++ L+ C D
Sbjct: 627 EAYELLQNMLA-----LGLRPSLQTYTLLLSCCTD 656
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ +++LGL N +LK GN L + G +D +TY T + A
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGN--ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
I+K+L M D PN V Y + + YG+ L++A+ + + +E G K
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNT----VTYNRLIHSYGRANYLNEAMNVFNQMQE--AGCK 431
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ Y ++ ++ K G D + +++ + + Y +I+ L K L +A K+
Sbjct: 432 PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKL 491
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
F E Q + N ++D++ KA N N KL
Sbjct: 492 FCEMVDQGCTPNLVTYNIMMDLH------AKARNYQNALKL 526
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 134/320 (41%), Gaps = 17/320 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM D GLA + YN+++ + K GN K +LM EM G+ D +T T L
Sbjct: 403 LNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCK 462
Query: 61 ASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+E +L ++ P D V Y TV Y K + AL + + E+ K
Sbjct: 463 EKRYEEAQGLL---QSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEK-KLTP 518
Query: 119 VNSAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S YN ++ + G+ K+ + ++ EL +K + + Y +I + K DLE+A +
Sbjct: 519 SISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFH 578
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ + D N L++ C NG L+KA L KG+++ V ++ L ++
Sbjct: 579 NKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKD 638
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ A+ + A +P + L + G A+N + L + G +
Sbjct: 639 GDVDTALHFFADMEAR-----GLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLS 693
Query: 298 TDLQDKLL-----DNVQNGK 312
LL D ++GK
Sbjct: 694 QSFSSPLLKPSSVDEAESGK 713
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 6/222 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ GL+ V YN++L + + G + +L+ M+++G+ R TY T +SAYA
Sbjct: 227 LSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYAR 286
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ K++ M A+ D Y + G + G +D+A + K E + G +
Sbjct: 287 LGWIKQATKVVEAMTAN-GFEPDLWTYNVLAAGLCQAGKVDEAFRL--KDEMERLGTLLP 343
Query: 121 S--AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN + K D LR+ E+ +K VK + VI L K +LE A
Sbjct: 344 DVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCL 403
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ L D N LI +C+ G + KA L++ +G
Sbjct: 404 NKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRG 445
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + G + V YN+++ Y K GN + M EM + D T T L
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKV 119
E K+L+ +D V Y T+ GY K G +D+AL + + E++I + V
Sbjct: 466 EKKLEEAYKLLSSARKR-GYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTV 524
Query: 120 NSAYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN I+ + GK + + ++ EL + + Y ++ + D+E A +
Sbjct: 525 --TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHN 582
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + D N L+ C G+LEKA L N KG+ I ++ L T +
Sbjct: 583 KMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEG 642
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ A + ++ + P + A + D G I AE F+ + +KG +P
Sbjct: 643 RLDDAFNLLSEMEEK-----ELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLP 696
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 9/249 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ GL YN ++ Y K G ++ +++ M +N + D +TY ++ +
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCN 325
Query: 61 ASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
E K+ ME N+ L D V Y T+ NG + + +A +L++ E KG K
Sbjct: 326 EGRIEEAFKLRDEME---NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSE--KGVK 380
Query: 119 VNS-AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
N+ +N+++ Y K GK DD I ++ + Y +I+ K ++ A +
Sbjct: 381 PNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRT 440
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+E + + D+ N ++ CR LE+A L++ + +G I S+ L GY +
Sbjct: 441 MDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500
Query: 237 NSQIHKAVE 245
+ + +A++
Sbjct: 501 DGNVDRALK 509
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/394 (21%), Positives = 156/394 (39%), Gaps = 64/394 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR G V YN ++ + G + ++ + G D +Y T L
Sbjct: 234 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCA 293
Query: 61 ASDHEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG--- 116
A E ++++ MME N + V + + + + G++++A+ +L EQ+ G
Sbjct: 294 AKRWEDVEELFAEMMEK--NCMPNEVTFDMLVRFFCRGGMVERAIQVL----EQMSGHGC 347
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLL 165
A + N+++ K G+ DD A + LNN Y V+ L
Sbjct: 348 AANTTLCNIVINTICKQGRVDD----------AFQFLNNMGSYGCSPDTISYTTVLKGLC 397
Query: 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225
+ + E A+++ +E + + N I + C+ GL+E+A L+ G E+++
Sbjct: 398 RAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIV 457
Query: 226 SWYYLATGYRQNSQIHKAVE-----AMKKVLAAYQTLVK--------------------- 259
++ L G+ ++ A+E K Y TL+
Sbjct: 458 TYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK 517
Query: 260 -WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLDNVQ---NGKSN 314
P+V + + +F +G + A +E + + G P + + LLD + N +
Sbjct: 518 DCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEA 577
Query: 315 LETLRELYGNSLAGNEETLSGPEGDTS--DLIEE 346
LE L L N ++ + T S G S D +EE
Sbjct: 578 LELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEE 611
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 124/289 (42%), Gaps = 20/289 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS---DHEGIDKILT 72
YN +++ + G +K EME NG + TY T + AY + G+ K ++
Sbjct: 217 YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMS 276
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYG 131
PN+ + Y + NG + G + +A +L+ E KG + YN +L Y
Sbjct: 277 SKGMQPNL----ISYNVIINGLCREGSMKEAWEILE--EMGYKGFTPDEVTYNTLLNGYC 330
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
K G L I E+ + V Y +I+S+ K +L A + F++ + L + R
Sbjct: 331 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 390
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
LID + R GLL +A ++N G V ++ G H +E M++
Sbjct: 391 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG-------HCVLERMEEA 443
Query: 251 LAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
L Q +V+ P V S + + F +G++ A + + +KG P
Sbjct: 444 LGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 492
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/324 (19%), Positives = 136/324 (41%), Gaps = 12/324 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++ M G+ + YN ++ + G+ ++ ++ EM G T D TY T L+ Y
Sbjct: 272 LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 331
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + H+ + ++ V+ V Y + N K L++A+ + +I+G +
Sbjct: 332 EGNFHQAL--VIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFF--DQMRIRGLRP 387
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N Y ++ + + G ++ RI E+ + Y I L+ +E A +
Sbjct: 388 NERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVV 447
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + L D + +I +CR G L++A + KG ++ L G +
Sbjct: 448 QEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEM 507
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ +A + +++L + P + ++ + EGD+ A + + + KGF+P
Sbjct: 508 RRLTEACDLSQEMLD-----MGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP 562
Query: 298 TDLQDKLLDNVQNGKSNLETLREL 321
+ +L N N ++ + L
Sbjct: 563 DAVTYSVLINGLNKQARTREAKRL 586
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 70/342 (20%), Positives = 136/342 (39%), Gaps = 46/342 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G V YN++L Y K GNF + + EM NG++ TY +++
Sbjct: 307 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 366
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + + M + + Y T+ +G+ + GLL++A +L + E V
Sbjct: 367 ARNLNRAMEFFDQMRIR-GLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 425
Query: 121 S----------------------------------AYNVILTLYGKYGKKDDVLRI-WEL 145
+ +Y+ I++ + + G+ D ++ E+
Sbjct: 426 TYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 485
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+K V Y ++I L ++ L A + +E L D LI+ YC G L
Sbjct: 486 VEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDL 545
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL--------AAYQTL 257
KA +L + KG ++ L G + ++ +A + K++ Y TL
Sbjct: 546 NKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTL 605
Query: 258 VKWKPSVE--SLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ ++E S+ A + F +G + A+ E + ++ P
Sbjct: 606 IENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKP 647
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 15/275 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+RD G TV YN ++ Y + + ++ ++M+E G DR TYCT + +A A
Sbjct: 391 VRD-GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGF 449
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ + M+A ++ D Y+ + N GK G L A + + +Q G N
Sbjct: 450 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ--GCTPNLVT 506
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+++ L+ K + L+++ ++ + Y V+ L LE AE +F E +
Sbjct: 507 YNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ 566
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D + L+D++ + G +EKA G +V + L + + + ++I
Sbjct: 567 QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIA 626
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVES----LAACLD 272
+A E ++ +LA + +PS+++ L+ C D
Sbjct: 627 EAYELLQNMLA-----LGLRPSLQTYTLLLSCCTD 656
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ +++LGL N +LK GN L + G +D +TY T + A
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGN--ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
I+K+L M D PN V Y + + YG+ L++A+ + + +E G K
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNT----VTYNRLIHSYGRANYLNEAMNVFNQMQE--AGCK 431
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ Y ++ ++ K G D + +++ + + Y +I+ L K L +A K+
Sbjct: 432 PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKL 491
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
F E Q + N ++D++ KA N N KL
Sbjct: 492 FCEMVDQGCTPNLVTYNIMMDLH------AKARNYQNALKL 526
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 9/220 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V++++++ K G + ++ M + G+ D TY T + + S+ + K+
Sbjct: 266 VVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFD 325
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--SEEQIKGAKVNSAYNVILTLY 130
MM A D + Y T+ NGY K+ +DKA+ + ++ +E I K YN ++
Sbjct: 326 MM-VRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTK---TYNTLMHGL 381
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
G+ D + ++ E+ + Y ++ SL K LE A + + E+ L D
Sbjct: 382 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDI 441
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
++ N +ID CR G LE A +L ++ KG +H W Y
Sbjct: 442 QVYNIIIDGMCRAGELEAARDLFSNLSSKG--LHPSVWTY 479
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 129/289 (44%), Gaps = 12/289 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V+Y S++ K + +L +M GI+ D +TY + + A + + + + +L
Sbjct: 196 VVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLN 255
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M + + D VI++TV + K G + +A ++ ++ V + Y ++ +
Sbjct: 256 QM-VNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVT-YTTLMDGHCL 313
Query: 133 YGKKDDVLRIWELYKK---AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
+ D+ ++++++ + A V++ Y +I+ K+ ++ A +FEE + DT
Sbjct: 314 QSEMDEAVKVFDMMVRKGFAPDVIS--YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDT 371
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
+ N L+ C G L+ A L + +G+ + ++ L +N + +A+ +K
Sbjct: 372 KTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKA 431
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A+ P ++ +D G++ A + L+ KG P+
Sbjct: 432 IEAS-----NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS 475
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 36/186 (19%)
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ----------------IKGAKVNS 121
PNV V Y T+ NG KVG A+ +L+ E+ K +V
Sbjct: 159 PNV----VTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTE 214
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
A+N+ + G+ G D+ Y +++ +L L + + + +
Sbjct: 215 AFNLFSQMVGQ-GISPDIFT---------------YTSLVHALCNLCEWKHVTTLLNQMV 258
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + D I + ++D C+ G + +A +V+ +G E V ++ L G+ S++
Sbjct: 259 NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMD 318
Query: 242 KAVEAM 247
+AV+
Sbjct: 319 EAVKVF 324
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 15/275 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+RD G TV YN ++ Y + + ++ ++M+E G DR TYCT + +A A
Sbjct: 508 VRD-GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGF 566
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ + M+A ++ D Y+ + N GK G L A + + +Q G N
Sbjct: 567 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ--GCTPNLVT 623
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+++ L+ K + L+++ ++ + Y V+ L LE AE +F E +
Sbjct: 624 YNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ 683
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D + L+D++ + G +EKA G +V + L + + + ++I
Sbjct: 684 QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIA 743
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVES----LAACLD 272
+A E ++ +LA + +PS+++ L+ C D
Sbjct: 744 EAYELLQNMLA-----LGLRPSLQTYTLLLSCCTD 773
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ +++LGL N +LK GN L + G +D +TY T + A
Sbjct: 437 EALQNLGLRIDAYQANQVLKQMNDYGN--ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 494
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
I+K+L M D PN V Y + + YG+ L++A+ + + +E G K
Sbjct: 495 KQFGAINKLLDEMVRDGCQPNT----VTYNRLIHSYGRANYLNEAMNVFNQMQE--AGCK 548
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ Y ++ ++ K G D + +++ + + Y +I+ L K L +A K+
Sbjct: 549 PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKL 608
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
F E Q + N ++D++ KA N N KL
Sbjct: 609 FCEMVDQGCTPNLVTYNIMMDLH------AKARNYQNALKL 643
>gi|302801578|ref|XP_002982545.1| hypothetical protein SELMODRAFT_421999 [Selaginella moellendorffii]
gi|300149644|gb|EFJ16298.1| hypothetical protein SELMODRAFT_421999 [Selaginella moellendorffii]
Length = 1138
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 138/312 (44%), Gaps = 9/312 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++++ G + N + +Y + G ++ L E ++ G+ D Y L A
Sbjct: 789 FKELKATGTISSCYSLNLLASMYRQLGLDAEVLMLAKEAQKLGVELDMCFYNLLLPAKFR 848
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
E ++K+ + + P + + N Y G DK L ML+ ++ ++ +
Sbjct: 849 VQGLEEVEKLYATITS-PRDRTRFFTCLAMANIYVSAGRNDKVLEMLELIDQGMEAGTIV 907
Query: 120 --NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YNV++++Y V R WE K+ + Y +I + KL + AE IF
Sbjct: 908 KQRRRYNVLISMYASLEDGARVERTWERLKQQRQPNTEDYCCIIRAWGKLGHVVRAETIF 967
Query: 178 EEWES--QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK-GREIHVKSWYYLATGY 234
+ E+ ++L Y T + N ++ VY G+ E+AE LV + + G ++ +++L Y
Sbjct: 968 QVAEANEKSLKYST-VFNAMMFVYSVAGMREEAEGLVQRMEYELGVKLDPWCYHHLVLLY 1026
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ I K + ++ A + ++ P +L A L+ D GD+ AE + G
Sbjct: 1027 AKAGDIGKMLSTLRAAQAGGKKERRFTPLAATLWAALNTLADAGDVDTAEETLTRWKRSG 1086
Query: 295 F-IPTDLQDKLL 305
+ + T L ++LL
Sbjct: 1087 YRVTTGLYNRLL 1098
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 16/256 (6%)
Query: 87 YATVGNGYGKVGLLDKA---LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW 143
Y+ + Y G+ DKA L +++K+ +Q K+ Y++++++Y +D + R+W
Sbjct: 290 YSMMAASYLSAGMHDKAQNLLEVIEKAMDQGSFPKLRRTYHILISMYSTMKNRDGMERVW 349
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
KK + Y +I S + D++ SAEK F+E + + L + L+ VY G
Sbjct: 350 ---KKIEDLKAQDYVAMIESCGRADEVGSAEKYFKEADRKGLLNQPSLFAALLGVYAGKG 406
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
+KAE L K + ++Y+ I +AVE ++ AA + +P
Sbjct: 407 QADKAEKLFKKMKEQDVSRDALCYHYIILANLNAKNIDRAVEILELAEAAGMRDGRSRPF 466
Query: 264 VESLAACLDYF-KDEGDIGGAENFIELLND--KGFIPTDLQ--DKLLDNVQNGKSNLET- 317
+ + L K+ GD+ AE LL D KG TD+ + LL ++
Sbjct: 467 LGTFCDVLKTIAKETGDVALAET---LLADWRKGKYRTDIAVYNHLLRVYLKAGKQVQGP 523
Query: 318 -LRELYGNSLAGNEET 332
L+ L GN++ ET
Sbjct: 524 FLKRLAGNNMKPTRET 539
>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 793
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 130/305 (42%), Gaps = 11/305 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G+ + + N+ + + K G EK + M+ GI D TY + + Y D +
Sbjct: 261 MQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNR 320
Query: 64 HEGIDKILTMMEADPN--VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
I+ L ++ P+ D V Y TV K +++ +++K
Sbjct: 321 ---IEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQV 377
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ + K+G DD L E K + GY ++ S + ++ A+ + +
Sbjct: 378 TYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDM 437
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S+ D ++D +CR G +++A+ ++ G + + S+ L G +
Sbjct: 438 YSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSG-- 495
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
K++EA + + + + W P+ + A + + EG + A + + +KGF PT +
Sbjct: 496 -KSLEAREMINVSEEHW--WTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPV 552
Query: 301 QDKLL 305
+ LL
Sbjct: 553 EINLL 557
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 15/243 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ML Y G + L M +GI D YT+ + AYA+ + I M
Sbjct: 362 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 421
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
D V D V Y TV ++G +D A+ + +Q A AYN ++ + +G
Sbjct: 422 -DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYAYNCLIQGFCTHGS 479
Query: 136 KDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
+L+ EL + ++NNG + ++I++L KL + A+ IF+ + L D
Sbjct: 480 ---LLKAKELISE---IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 533
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ + L+D YC G +EKA + + G E +V + L GY + +I + + +
Sbjct: 534 AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFR 593
Query: 249 KVL 251
++L
Sbjct: 594 EML 596
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 10/233 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNF-EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
GL ++ N +L+ + + E LD L+H E G D ++Y L + D
Sbjct: 141 GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 200
Query: 67 IDKILTMME-----ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D +L MM PNV V Y TV +G+ K G ++KA + K+ ++ + +
Sbjct: 201 ADDLLRMMAEGGAVCSPNV----VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVT 256
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+V+ L + ++ K V N Y N+I + A ++F+E
Sbjct: 257 YNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 316
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ D + L+ C+ G +++A ++ + +KG+ V S+ + GY
Sbjct: 317 RHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY 369
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 138/344 (40%), Gaps = 50/344 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY-------CT-- 53
+MRD G+ V Y +++ + G + ++M + G+ D+Y Y CT
Sbjct: 419 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 478
Query: 54 -----------------RLSAYADASDHEGIDKILTMMEAD------PNVAL--DWVIYA 88
L +S + K+ +M+A NV L D V+Y+
Sbjct: 479 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYS 538
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL---YGKYGKKDDVLRIW-E 144
+ +GY VG ++KAL + + + A + V TL Y K G+ D+ L ++ E
Sbjct: 539 MLMDGYCLVGKMEKALRVF----DAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFRE 594
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ ++ +K Y +I L + A+ F E + D N ++ +N
Sbjct: 595 MLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRC 654
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
++A L + +I++ + + G Q ++ +A K L A + + PSV
Sbjct: 655 FDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA-----KDLFASISRSRLVPSV 709
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV 308
+ + + EG + AE+ + + G P +LL++V
Sbjct: 710 VTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP---NSRLLNHV 750
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 105/248 (42%), Gaps = 7/248 (2%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-H 64
++GL VVY+ ++ Y G EK + M GI + YCT ++ Y
Sbjct: 527 NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRID 586
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAY 123
EG+ M++ + ++Y+ + +G + G A +K E G ++ Y
Sbjct: 587 EGLSLFREMLQR--GIKPSTILYSIIIDGLFQAG--RTVPAKVKFHEMTESGIAMDICTY 642
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N++L K D+ + ++ EL VK+ +I + + +E A+ +F
Sbjct: 643 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 702
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
L + +I + GL+E+AE++ + + G E + + ++ + ++I +
Sbjct: 703 SRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVR 762
Query: 243 AVEAMKKV 250
A + K+
Sbjct: 763 AGAYLSKI 770
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 36/247 (14%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ V YNS++ K +K ++ + +M + + +TY + Y+
Sbjct: 243 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 302
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA------LAMLKKSEE--- 112
+ ++ M ++ D V + + K G + +A +AM ++ +
Sbjct: 303 GQWKEAVRVFKEMRRH-SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 361
Query: 113 --------QIKGAKVNS-----------------AYNVILTLYGKYGKKDDVLRIW-ELY 146
KG V+ +NV++ Y G D + I+ E+
Sbjct: 362 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 421
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
VK YR VI++L ++ ++ A + F + Q + D N LI +C +G L
Sbjct: 422 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 481
Query: 207 KAENLVN 213
KA+ L++
Sbjct: 482 KAKELIS 488
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 15/243 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ML Y G + L M +GI D YT+ + AYA+ + I M
Sbjct: 375 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 434
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
D V D V Y TV ++G +D A+ + +Q A AYN ++ + +G
Sbjct: 435 -DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYAYNCLIQGFCTHG- 491
Query: 136 KDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
+L+ EL + ++NNG + ++I++L KL + A+ IF+ + L D
Sbjct: 492 --SLLKAKELISE---IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 546
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ + L+D YC G +EKA + + G E +V + L GY + +I + + +
Sbjct: 547 AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFR 606
Query: 249 KVL 251
++L
Sbjct: 607 EML 609
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 10/233 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNF-EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
GL ++ N +L+ + + E LD L+H E G D ++Y L + D
Sbjct: 154 GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 213
Query: 67 IDKILTMME-----ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D +L MM PNV V Y TV +G+ K G ++KA + K+ ++ + +
Sbjct: 214 ADDLLRMMAEGGAVCSPNV----VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVT 269
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+V+ L + ++ K V N Y N+I + A ++F+E
Sbjct: 270 YNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 329
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ D + L+ C+ G +++A ++ + +KG+ V S+ + GY
Sbjct: 330 RHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY 382
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 138/344 (40%), Gaps = 50/344 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY-------CT-- 53
+MRD G+ V Y +++ + G + ++M + G+ D+Y Y CT
Sbjct: 432 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 491
Query: 54 -----------------RLSAYADASDHEGIDKILTMMEAD------PNVAL--DWVIYA 88
L +S + K+ +M+A NV L D V+Y+
Sbjct: 492 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYS 551
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL---YGKYGKKDDVLRIW-E 144
+ +GY VG ++KAL + + + A + V TL Y K G+ D+ L ++ E
Sbjct: 552 MLMDGYCLVGKMEKALRVF----DAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFRE 607
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ ++ +K Y +I L + A+ F E + D N ++ +N
Sbjct: 608 MLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRC 667
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
++A L + +I++ + + G Q ++ +A K L A + + P+V
Sbjct: 668 FDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA-----KDLFASISRSRLVPNV 722
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV 308
+ + + EG + AE+ + + G P +LL++V
Sbjct: 723 VTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP---NSRLLNHV 763
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 106/248 (42%), Gaps = 7/248 (2%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-H 64
++GL VVY+ ++ Y G EK + M GI + YCT ++ Y
Sbjct: 540 NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRID 599
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAY 123
EG+ M++ + ++Y+ + +G + G A +K E G ++ Y
Sbjct: 600 EGLSLFREMLQR--GIKPSTILYSIIIDGLFQAG--RTVPAKMKFHEMTESGIAMDICTY 655
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N++L K D+ + ++ EL VK+ +I + + +E A+ +F
Sbjct: 656 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 715
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
L + + +I + GL+E+AE++ + + G E + + ++ + ++I +
Sbjct: 716 SRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVR 775
Query: 243 AVEAMKKV 250
A + K+
Sbjct: 776 AGAYLSKI 783
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 36/247 (14%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ V YNS++ K +K ++ + +M + + +TY + Y+
Sbjct: 256 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 315
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA------LAMLKKSEE--- 112
+ ++ M ++ D V + + K G + +A +AM ++ +
Sbjct: 316 GQWKEAVRVFKEMRRH-SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 374
Query: 113 --------QIKGAKVNS-----------------AYNVILTLYGKYGKKDDVLRIW-ELY 146
KG V+ +NV++ Y G D + I+ E+
Sbjct: 375 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 434
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
VK YR VI++L ++ ++ A + F + Q + D N LI +C +G L
Sbjct: 435 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 494
Query: 207 KAENLVN 213
KA+ L++
Sbjct: 495 KAKELIS 501
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 130/297 (43%), Gaps = 13/297 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V YNS++ K G + + M + G+ + TY T L YA
Sbjct: 181 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYAT 240
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K +++A+ + K +Q G N
Sbjct: 241 KGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ--GLNPN 297
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D + +E + + + N Y ++I L + E AE++
Sbjct: 298 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 357
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C +T N +ID +C+ G + ++E L + G + + ++ L GY
Sbjct: 358 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 417
Query: 239 QIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ +A + MK Y TL+ + + L F++ G + + I
Sbjct: 418 KMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDII 474
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 4/199 (2%)
Query: 38 EMEENGITYDRYTYCTRLSAYADAS-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96
E+ GI D ++Y L+ D + E ++ + M + + D V Y+TV NG+ K
Sbjct: 42 ELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFK 100
Query: 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNN 155
G LDK + + +Q V + YN I+ K D + + + K V
Sbjct: 101 EGDLDKTYSTYNEMLDQRISPNVVT-YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 159
Query: 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215
Y +++ + A ++ S + D N L+D C+NG +A + +
Sbjct: 160 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 219
Query: 216 KLKGREIHVKSWYYLATGY 234
+G + + ++ L GY
Sbjct: 220 TKRGLKPEITTYGTLLQGY 238
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 38/232 (16%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y++++ ++K G+ +K S +EM + I+ + TY + ++A A + ++LT
Sbjct: 88 VVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLT 147
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M V D + Y ++ +G+ G +A+ LKK V + YN ++ K
Sbjct: 148 TM-VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVT-YNSLMDYLCK 205
Query: 133 YGKKDDVLRIWE-LYKKAVK-------VLNNGY-----------------RN-------- 159
G+ + +I++ + K+ +K L GY RN
Sbjct: 206 NGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 265
Query: 160 ---VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
++ + K + +E A +F + Q L + +I + C++G +E A
Sbjct: 266 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 317
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 133/299 (44%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+A Y+ ++ Y + G +E L+ EME +G+ Y + L+ + D
Sbjct: 322 LDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRD 381
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL-AMLKKSEEQIKGAKV 119
D + +L M+A V D Y + + +GK L A+ A + EE+I+ V
Sbjct: 382 RGDWQKAFAVLREMQAS-GVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVV 440
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL-KLDDLESAEKIFE 178
+N ++ + K G+ D + ++E +++ N++ +LL + + E E +
Sbjct: 441 T--WNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLS 498
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + Q L + L+DVY R+G ++A + + K G + ++ L Y Q
Sbjct: 499 EMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRG 558
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A+ +K + A + S+ L + ++ F ++ + A + ++ + + G P
Sbjct: 559 LADHALNVVKAMKAD-----GLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRP 612
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 76/173 (43%), Gaps = 3/173 (1%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK--KDDVL 140
D +++ + + + + L D AL +L S + I ++A +++ G G+ + + L
Sbjct: 227 DAPLFSDLISAFARAALPDAALELLA-SAQAIGLTPRSNAVTALISALGSAGRVAEAEAL 285
Query: 141 RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
+ +K Y ++ +++ L++AE++ +E + D + L+D Y
Sbjct: 286 FLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYT 345
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
R G E A L+ + G + + + G+R KA ++++ A+
Sbjct: 346 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQAS 398
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 128/259 (49%), Gaps = 13/259 (5%)
Query: 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
++A++ A++ + + L +M A +V D VIY + +G + +AL + +E ++
Sbjct: 227 VAAFSAAANFGKVSETLHLMIAAGSVP-DTVIYQRIIHGLFAHKMGSEALRVF--NEIKL 283
Query: 115 KGAKVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLES 172
+G V++ Y + K G D+ +IW E+ K ++ Y ++++ K D E
Sbjct: 284 RGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEM 343
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A K+++E + L T N L+ +C +G +++A + KG E V ++ L
Sbjct: 344 ARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQ 403
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
G + ++ +A++ +++L++ +PSV + +D +EG + A +++++
Sbjct: 404 GLCKAGRLSEAIQVYEQLLSS-----GLEPSVSTFTPLIDTMCEEGQVDAAVELLKVMHA 458
Query: 293 KGFIPTDLQDKLLDNVQNG 311
KG P ++ D++ NG
Sbjct: 459 KGLEPL---ARINDSIING 474
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 38/210 (18%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y + + K G ++ + +EM + G+ + Y YC+ ++ Y A D E K+
Sbjct: 290 AVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYD 349
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M +G G LK+S + N+++T +
Sbjct: 350 EM---------------LGKG-------------LKES---------TVSCNILVTGFCT 372
Query: 133 YGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
+G+ D+ L ++ E+ KK ++ Y +I L K L A +++E+ S L
Sbjct: 373 HGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVST 432
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGRE 221
LID C G ++ A L+ KG E
Sbjct: 433 FTPLIDTMCEEGQVDAAVELLKVMHAKGLE 462
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 132/301 (43%), Gaps = 8/301 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ VVY+S++ + G ++ EME GI+ D YTY + + + A + +
Sbjct: 1115 GILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEV 1174
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
L +M D + D + + +G K G + +A +L+ + K + + YN ++
Sbjct: 1175 TWFLNLM-VDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILT-YNTLM 1232
Query: 128 TLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
G+ +D +++E L + +K+ Y +I+ K ++ A + FEE + L
Sbjct: 1233 NGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLK 1292
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
T N LI C++G + A+ L + G+ + + ++ L G +N + +A++
Sbjct: 1293 PSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDL 1352
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLD 306
+ + KP++E + LD G + A + ++ G P + +L
Sbjct: 1353 FQSIKKTEH-----KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILI 1407
Query: 307 N 307
N
Sbjct: 1408 N 1408
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 116/248 (46%), Gaps = 11/248 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M G++ YNS++ + G ++++ ++ M + G + D +T+ +
Sbjct: 1143 FKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCK 1202
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+IL +M +P++ + Y T+ NG VG L+ A + + + +G
Sbjct: 1203 EGKVGEAQQILELMRHKGKEPDI----LTYNTLMNGLCLVGQLEDATKLFESLAD--RGI 1256
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
K+N +YN+++ Y K K D+ R + E+ K +K Y +I +L + + +A+K
Sbjct: 1257 KLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQK 1316
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F E ++ L+D C+NG LE+A +L K + +++ + L G
Sbjct: 1317 LFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMC 1376
Query: 236 QNSQIHKA 243
+ ++ +A
Sbjct: 1377 RAGKLEEA 1384
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 92/201 (45%), Gaps = 11/201 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++MR GL +TV YN+++ ++G L EM+ G TYC L
Sbjct: 1283 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCK 1342
Query: 60 DASDHEGIDKILTM--MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ E +D ++ E PN+ +++ + +G + G L++A E G
Sbjct: 1343 NGHLEEAMDLFQSIKKTEHKPNIE----VFSILLDGMCRAGKLEEAWKQF--DEISKNGL 1396
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ ++ AYN+++ G + ++ +W++ +K + + +I +LLK +++ A +
Sbjct: 1397 EPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQ 1456
Query: 176 IFEEWESQALCYDTRIPNFLI 196
+ EE ++ D + + L+
Sbjct: 1457 LLEEMRNRNFSPDEAVTSMLL 1477
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 116/283 (40%), Gaps = 16/283 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ MR G + YN+++ G E L + + GI + ++Y ++ Y
Sbjct: 1213 LELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCK 1272
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ ID+ E + V Y T+ + G + A + E Q G
Sbjct: 1273 ---DQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLF--VEMQTCGQF 1327
Query: 119 VN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
+ S Y V+L K G ++ + +++ KK N + ++ + + LE A K
Sbjct: 1328 LKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQ 1387
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+E L DT N LI+ C G+L +A L+ + KG ++ + +
Sbjct: 1388 FDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLK 1447
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKP--SVESLAACLDYFKDE 277
++IH+A++ ++++ + P +V S+ CL F +
Sbjct: 1448 ENEIHEAIQLLEEMRNR-----NFSPDEAVTSMLLCLASFDPQ 1485
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 15/220 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM D GL TV+Y +++ ++K G + +L+H++ ++G+ + TYC +
Sbjct: 467 LHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCK 526
Query: 61 A-SDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A S +E I M E DPNV +Y T+ +G+ K+G L KA+ ++ + + KG
Sbjct: 527 AGSIYEAISHFDKMRELGLDPNVQ----VYTTLIDGFCKIGSLSKAVHLMNEMVD--KGM 580
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN----GYRNVISSLLKLDDLESA 173
++ V +L + K+ D+ + L K ++ Y IS ++ ++ A
Sbjct: 581 SLDKV--VYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEA 638
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ E + D N LI Y + G +E+A +L N
Sbjct: 639 RGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQN 678
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 139/335 (41%), Gaps = 51/335 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR G A V YN+++ + K G EK S EM+ G+ + T LS + D
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVT----LSTFVD 312
Query: 61 ASDHEGID----KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
A EG+ K+ M + ++ Y ++ +G K G LD A+ +L + Q
Sbjct: 313 AFCKEGLVREAMKLFAQMRVRGMMPNEFT-YTSLVDGTCKAGRLDDAIVLLDEMVHQGLV 371
Query: 117 AKVNSAYNVI---LTLYGKYGKKDDVLRIWE---------LY-------------KKAVK 151
V + Y V+ L GK DDVL + E LY ++A+
Sbjct: 372 PNVVT-YTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALD 430
Query: 152 VLN-----------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
+LN + Y +I L K+ L+ A+ + + + L +T I ++D +
Sbjct: 431 LLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFF 490
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260
+ G +A L++ G + +V ++ L G + I++A+ K+ +
Sbjct: 491 KAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRE-----LGL 545
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
P+V+ +D F G + A + + + DKG
Sbjct: 546 DPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGM 580
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 17/259 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M GL V Y M+ K G D ++ ME G+ + Y T + +
Sbjct: 362 LDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFM 421
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +L M+ + + LD +Y T+ G KV LD+A ++L K ++ G + N
Sbjct: 422 NKNSERALDLLNEMK-NKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDC--GLRPN 478
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR-NVISSLLKLDDLESAEKI-- 176
+ Y I+ + K GK+ + + + K+ ++G + NV++ +D L A I
Sbjct: 479 TVIYTTIMDAFFKAGKESEAVALLH------KIPDSGLQPNVVTYCALIDGLCKAGSIYE 532
Query: 177 ----FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
F++ L + ++ LID +C+ G L KA +L+N KG + + L
Sbjct: 533 AISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLID 592
Query: 233 GYRQNSQIHKAVEAMKKVL 251
G+ + + A K++
Sbjct: 593 GHMKQGDLQGAFALKAKMI 611
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 10/284 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q+M +G+ + + M+ + K G ++ + +ME G+ + TY + ++ Y
Sbjct: 181 QQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSL 240
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D E +L M ++ V+ + V Y + GY K +D+A +L+ +E+
Sbjct: 241 GDVEAAKGVLKFM-SEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDER 299
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V++ Y + GK DD +R+ E+ + +K ++I+ K ++ AE +
Sbjct: 300 AYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRM 359
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L D+ N L+D YCR G +A NL + +G E V ++ L G +
Sbjct: 360 VDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAF 419
Query: 241 HKAVE----AMKKVLA----AYQTLVKWKPSVESLAACLDYFKD 276
A++ MK+ +A Y TL+ +E+ +KD
Sbjct: 420 DDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKD 463
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 111/291 (38%), Gaps = 54/291 (18%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD---ASDHEGIDKILTM 73
NS+L K G + +M GI D + ++A+ + G K +
Sbjct: 161 NSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMEN 220
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGK 132
+ +PN+ V Y ++ NGY +G ++ A +LK E KG N Y +++ Y K
Sbjct: 221 LGVEPNI----VTYHSLINGYVSLGDVEAAKGVLKFMSE--KGVSRNVVTYTLLIKGYCK 274
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW-ESQALCYDTRI 191
K D+ AEK+ E AL D R
Sbjct: 275 QCKMDE----------------------------------AEKVLRGMQEEAALVPDERA 300
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
LID YCR G ++ A L++ G + ++ L GY + +IH+A + +
Sbjct: 301 YGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR-- 358
Query: 252 AAYQTLVKW--KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+V W KP S LD + EG A N + + +G PT L
Sbjct: 359 -----MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVL 404
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 110/296 (37%), Gaps = 46/296 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M LGL + NS++ Y K G + + ++ M + + D Y+Y T L Y
Sbjct: 321 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCR 380
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
G+ L DK L +E I+ +
Sbjct: 381 E-----------------------------GHTSEAFNLCDKML------QEGIEPTVL- 404
Query: 121 SAYNVILTLYGKYGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +L + G DD L+IW L K+ V GY ++ L K+++ E A ++++
Sbjct: 405 -TYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKD 463
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
++ N +I C+ G + +AE + + K G ++ L GY + S
Sbjct: 464 ILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASN 523
Query: 240 IHKAV--------EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ +A E + + Y +L+ L D + G G N +
Sbjct: 524 VGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIV 579
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 95/213 (44%), Gaps = 12/213 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + GL+ ++ ++M+ Y+ G ++ + LM +M ++G D + YA
Sbjct: 603 EMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYA--- 659
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKV 119
I KI ++ L + ++Y G K G +D A S +KG
Sbjct: 660 ---AIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFF--SMLSLKGFVPD 714
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N Y ++ Y G D+ R+ E+ ++ + Y +I+ L K ++++ A+++F
Sbjct: 715 NFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFH 774
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ + L + N LID YC+ G ++ A L
Sbjct: 775 KLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 807
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 127/326 (38%), Gaps = 30/326 (9%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM G+ T + YN++LK + G F+ + H M + G+ D Y T L
Sbjct: 393 KMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKME 452
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ EG + + A + + T+ +G K+G + +A + K ++ + +
Sbjct: 453 NFEGASTLWKDILAR-GFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKD-LGCSPDGIT 510
Query: 123 YNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y ++ Y K ++ + ++ + Y ++IS L K L + E
Sbjct: 511 YRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMG 570
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ L + LID +C+ G+L+KA + G ++ + +G + +I
Sbjct: 571 IRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRID 630
Query: 242 KAVEAMKKVL-----AAYQTLVKWK---PSVESLAACLDY-------------------F 274
+A M+K++ ++ +K +++ +A LD
Sbjct: 631 EANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGL 690
Query: 275 KDEGDIGGAENFIELLNDKGFIPTDL 300
G + A F +L+ KGF+P +
Sbjct: 691 CKTGKVDDARRFFSMLSLKGFVPDNF 716
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 131/297 (44%), Gaps = 10/297 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++ D GL ++N +++ + G ++ EM+ G+ ++ T +S A
Sbjct: 230 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 289
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D +G + + M ++ V D Y + G +VG ++ A + +K +G K N+
Sbjct: 290 DLDGAETLHRRM-SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCG--RGMKPNAV 346
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ +++ + K G + +L + E+ ++ V+ Y +++ L + DL+SA I E
Sbjct: 347 VFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEM 406
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S L DT LID YC+ L+ A + + +G + ++ L +G + +
Sbjct: 407 RSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRS 466
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A + +++ A +P + +D F +GD+ ++ + +KG P
Sbjct: 467 ADAERVLGEMMEA-----GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKP 518
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 5/214 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM G+ VV+ ++ + K G+ E + L EM E G+ D TY ++ A
Sbjct: 334 EKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRA 393
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D + I+ M + + D V Y T+ +GY K LD +AM K +G ++
Sbjct: 394 RDLKSASGIVVEMRSA-GLRPDTVTYTTLIDGYCKEEELD--MAMEIKQNMVAEGVGLDE 450
Query: 122 A-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ K G+ D R+ E+ + ++ N Y VI + + D+++ ++ +E
Sbjct: 451 VTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 510
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+++ N +++ +C+ G ++ A+ L+N
Sbjct: 511 MQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLN 544
>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 117/280 (41%), Gaps = 38/280 (13%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + YNS+L + G +E L+ EM++ GI D +TY T L +
Sbjct: 279 GIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLA 338
Query: 68 DKILTMMEAD---PNV-------------------------------ALDWVIYATVGNG 93
++L M + P V ++D V Y T+
Sbjct: 339 RRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGI 398
Query: 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL 153
Y K+G D+A+ K+ E V + YN +L+ YG+YG D+V R++E KA +
Sbjct: 399 YAKLGRFDEAIGQCKEMESCGMKRDVVT-YNALLSGYGRYGMYDEVRRLFE-EMKAWNIY 456
Query: 154 NNG--YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
N Y +I K + A ++++++ L D +ID C+NGL+E + L
Sbjct: 457 PNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIML 516
Query: 212 VNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
+ KG + +V ++ + RQ+ + V + +
Sbjct: 517 LIAMIEKGIKPNVVTFNSIIDASRQSPTLEYGVHGSSQAV 556
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K+R + + R V YN+M+ +Y K G F++ EME G+ D TY LS Y
Sbjct: 381 KLRSISVDR--VSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYG 438
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK 108
++ + ++ M+A N+ + + Y+T+ + Y K G+ +A+ + K
Sbjct: 439 MYDEVRRLFEEMKA-WNIYPNTLTYSTMIDVYTKGGMFQEAMDVYK 483
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ R V YN++L Y + G ++++ L EM+ I + TY T + Y
Sbjct: 413 KEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKG 472
Query: 62 S-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E +D +A + +D V Y ++ + K GL++ ++ +L E KG K N
Sbjct: 473 GMFQEAMDVYKDFKKA--QLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIE--KGIKPN 528
Query: 121 -SAYNVIL-------TL-YGKYGKKDDV 139
+N I+ TL YG +G V
Sbjct: 529 VVTFNSIIDASRQSPTLEYGVHGSSQAV 556
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 2/233 (0%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q+M +G+ + + M+ + K G ++ + +ME G+ + TY + ++ Y
Sbjct: 215 QQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSL 274
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D E +L M ++ V+ + V Y + GY K +D+A +L+ +E+
Sbjct: 275 GDVEAAKGVLKFM-SEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDER 333
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V++ Y + GK DD +R+ E+ + +K ++I+ K ++ AE +
Sbjct: 334 AYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRM 393
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
L D+ N L+D YCR G +A NL + +G E V ++ L G
Sbjct: 394 VDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKG 446
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 120/269 (44%), Gaps = 20/269 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + GL+ ++ ++M+ Y+ G ++ + LM +M ++G D + YA
Sbjct: 637 EMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYA--- 693
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKV 119
I KI ++ L + ++Y G K G +D A S +KG
Sbjct: 694 ---AIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFF--SMLSLKGFVPD 748
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N Y ++ Y G D+ R+ E+ ++ + Y +I+ L K ++++ A+++F
Sbjct: 749 NFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFH 808
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + L + N LID YC+ G ++ A L + +G V ++ L G ++
Sbjct: 809 KLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHG 868
Query: 239 QIHKAVEAMKKVLAA--------YQTLVK 259
I ++++ + +++ A Y TLV+
Sbjct: 869 DIERSMKLLNQMIKAGVDSKLIEYCTLVQ 897
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 111/291 (38%), Gaps = 54/291 (18%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD---ASDHEGIDKILTM 73
NS+L K G + +M GI D + ++A+ + G K +
Sbjct: 195 NSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMEN 254
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGK 132
+ +PN+ V Y ++ NGY +G ++ A +LK E KG N Y +++ Y K
Sbjct: 255 LGVEPNI----VTYHSLINGYVSLGDVEAAKGVLKFMSE--KGVSRNVVTYTLLIKGYCK 308
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW-ESQALCYDTRI 191
K D+ AEK+ E AL D R
Sbjct: 309 QCKMDE----------------------------------AEKVLRGMQEEAALVPDERA 334
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
LID YCR G ++ A L++ G + ++ L GY + +IH+A + +
Sbjct: 335 YGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR-- 392
Query: 252 AAYQTLVKW--KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+V W KP S LD + EG A N + + +G PT L
Sbjct: 393 -----MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVL 438
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 38/247 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M LGL + NS++ Y K G + + ++ M + + D Y+Y T L Y
Sbjct: 355 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCR 414
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
G+ L DK L +E I+ +
Sbjct: 415 E-----------------------------GHTSEAFNLCDKML------QEGIEPTVL- 438
Query: 121 SAYNVILTLYGKYGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +L + G DD L+IW L K V GY ++ L K+++ E A ++++
Sbjct: 439 -TYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKD 497
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
++ N +I C+ G + +AE + + K G ++ L GY + S
Sbjct: 498 ILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASN 557
Query: 240 IHKAVEA 246
+ +A +
Sbjct: 558 VGQAFKV 564
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 127/326 (38%), Gaps = 30/326 (9%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM G+ T + YN++LK + G F+ + H M + G+ D Y T L
Sbjct: 427 KMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKME 486
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ EG + + A + + T+ +G K+G + +A + K ++ + +
Sbjct: 487 NFEGASTLWKDILAR-GFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKD-LGCSPDGIT 544
Query: 123 YNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y ++ Y K ++ + ++ + Y ++IS L K L + E
Sbjct: 545 YRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMG 604
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ L + LID +C+ G+L+KA + G ++ + +G + +I
Sbjct: 605 IRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRID 664
Query: 242 KAVEAMKKVL-----AAYQTLVKWK---PSVESLAACLDY-------------------F 274
+A M+K++ ++ +K +++ +A LD
Sbjct: 665 EANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGL 724
Query: 275 KDEGDIGGAENFIELLNDKGFIPTDL 300
G + A F +L+ KGF+P +
Sbjct: 725 CKTGKVDDARRFFSMLSLKGFVPDNF 750
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 120/292 (41%), Gaps = 45/292 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ G + + + YN+++ Y K G K D+L+ EM I + T+ + +
Sbjct: 252 VEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR 311
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALA------------ 105
+ K+ M+ PNV V Y ++ NG G LD+AL
Sbjct: 312 DENVTAAKKVFEEMQRQGLQPNV----VTYNSLINGLCSNGKLDEALGLQDKMSGMGLKP 367
Query: 106 ----------------MLKKSEEQI-----KGAKVNS-AYNVILTLYGKYGKKDDVLRIW 143
MLK++ E + +G N +N ++ YGK G+ DD +
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427
Query: 144 ELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
+ N + Y +I + +++ A K+ +E E L D N L+D C+
Sbjct: 428 SMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487
Query: 203 GLLEKAENLVNHEKL---KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
G KA L++ L KGR ++ ++ L G+ ++ +A + ++L
Sbjct: 488 GETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEML 539
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 17/224 (7%)
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK--KD 137
+ ++ V + V NG KVG KA +++ + V + YN I+ Y K GK K
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVIT-YNTIIDGYCKAGKMFKA 283
Query: 138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
D L + E+ K + + +I + +++ +A+K+FEE + Q L + N LI+
Sbjct: 284 DAL-LKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLIN 342
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM----KKVLAA 253
C NG L++A L + G + +V ++ L G+ + + +A E + K+ LA
Sbjct: 343 GLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLA- 401
Query: 254 YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P+V + +D + G + A ++ D G P
Sbjct: 402 --------PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 67.4 bits (163), Expect = 1e-08, Method: Composition-based stats.
Identities = 58/232 (25%), Positives = 107/232 (46%), Gaps = 9/232 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + + V++++++ K G + ++ M + G+ D TY T + +
Sbjct: 263 LNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 322
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--SEEQIKGAK 118
S+ + K+ MM A D + Y T+ NGY K+ +DKA+ + ++ +E I K
Sbjct: 323 QSEMDEAVKVFDMM-VRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTK 381
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN ++ G+ D + ++ E+ + Y ++ SL K LE A +
Sbjct: 382 T---YNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALL 438
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
+ E+ L D ++ N +ID CR G LE A +L ++ KG +H W Y
Sbjct: 439 KAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG--LHPSVWTY 488
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 56/286 (19%), Positives = 126/286 (44%), Gaps = 8/286 (2%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V+Y S++ K + +L +M GI+ D +TY + + A + + + + +L
Sbjct: 206 VIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQ 265
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M + + D VI++TV + K G + +A ++ ++ V + Y ++ +
Sbjct: 266 M-VNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVT-YTTLMDGHCLQ 323
Query: 134 GKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ D+ ++++++ +K Y +I+ K+ ++ A +FEE + DT+
Sbjct: 324 SEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTY 383
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
N L+ C G L+ A L + +G+ + ++ L +N + +A+ +K + A
Sbjct: 384 NTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEA 443
Query: 253 AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ P ++ +D G++ A + L+ KG P+
Sbjct: 444 S-----NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS 484
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 2/238 (0%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V+YN + + K GN + HE++ G+ D +Y + + A +++
Sbjct: 253 VLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQ 312
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
ME + V + Y T+ GYG G + A +L + +E+ V S +N ILT GK
Sbjct: 313 METERAVPCAYA-YNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVS-FNSILTCLGKK 370
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
K D+ L ++E KK + ++ Y +I L +E A I +E E L + N
Sbjct: 371 RKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVN 430
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
++D C+ E A + +G + ++ L G + + A + +L
Sbjct: 431 IMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENML 488
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 120/264 (45%), Gaps = 14/264 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M D G VVY S+++ ++ G E + EM G D T L+ Y D
Sbjct: 484 FENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPD----LTLLNTYMD 539
Query: 61 ASDHEG-IDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
G ++K + E D Y+ + +G K G + ++ ++Q G
Sbjct: 540 CVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQ--GF 597
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEK 175
+++ AYN ++ + K GK D + E K K V Y ++I L K+D L+ A
Sbjct: 598 ALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYM 657
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+FEE +S+ + + + + LID + + G +++A ++ KG +V +W L
Sbjct: 658 LFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALV 717
Query: 236 QNSQIHKAV---EAMKKVLAAYQT 256
+ +I++A+ ++MK++ + T
Sbjct: 718 KAEEINEALICFQSMKEMKCSPNT 741
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 136/304 (44%), Gaps = 16/304 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA-YA 59
+ K+ + GL V YN+++ G+ +K + EM GI +TY + A +
Sbjct: 310 LCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFL 369
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E D I M E V D V Y NGY + G KAL++ + E+ +
Sbjct: 370 EKRIEEAEDMIKEMREK--GVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEK----NI 423
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNN--GYRNVISSLLKLDDLESAEK 175
+L +GK++ + E +KK++K +L + + +I +++ A +
Sbjct: 424 RPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQ 483
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ +E ++ + D N L+ YCR +E+A+ L++ K +G + S+ L +GY
Sbjct: 484 LLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYS 543
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + A+E ++L+ + + P++ + A + + G+ AE + + KG
Sbjct: 544 KRGDMKDALEVFDEMLS-----LGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGI 598
Query: 296 IPTD 299
P D
Sbjct: 599 TPDD 602
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G+ V YN + Y + GN +K SL EM E I TY + + +
Sbjct: 380 IKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGK 439
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E +K ++ + D +++ + +G+ G +D+A +LK ++ AKV
Sbjct: 440 RNRMSEAEEKFKKSIKE--GMLPDIIMFNALIDGHCVNGNIDRAFQLLK----EMDNAKV 493
Query: 120 ---NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+N ++ Y + K ++ ++ E+ ++ +K + Y +IS K D++ A +
Sbjct: 494 VPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALE 553
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+E S N LI Y + G + AE L+ + KG ++ Y+ +
Sbjct: 554 VFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMK 613
Query: 236 QNSQI 240
N +
Sbjct: 614 TNDDL 618
>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 890
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 38/273 (13%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL + YNS+L + G +E L+ EM+ I D +TY T L A +
Sbjct: 314 GLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLA 373
Query: 68 DKILTMMEAD---PNV-------------------------------ALDWVIYATVGNG 93
++ M + PNV LD V Y T+
Sbjct: 374 RRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGI 433
Query: 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL 153
Y K+G LD+A+ K+ E V + YN +L+ YGK+G D+V R++E KA +
Sbjct: 434 YEKLGNLDEAIEKCKEMERSGINRDVVT-YNALLSGYGKHGMYDEVRRLFE-EMKARNIY 491
Query: 154 NNG--YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
N Y +I K + + A ++ E++ L D + +ID C+NGL+E + L
Sbjct: 492 PNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLMESSIML 551
Query: 212 VNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ KG + +V ++ + +Q+ + V
Sbjct: 552 LMAMMEKGIKPNVVTFNSIIDASQQSPTLEYGV 584
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K+R + L R V YN+++ +Y K GN ++ EME +GI D TY LS Y
Sbjct: 416 KLRSVCLDR--VSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHG 473
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL 104
++ + ++ M+A N+ + + Y+T+ + Y K + +A+
Sbjct: 474 MYDEVRRLFEEMKAR-NIYPNTLTYSTMIDMYTKGEMFQEAM 514
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 18/186 (9%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ R V YN++L Y K G ++++ L EM+ I + TY T + Y
Sbjct: 448 KEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKG 507
Query: 62 S-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E +D A + +D V Y+ + + K GL++ ++ +L E KG K N
Sbjct: 508 EMFQEAMDVYREFKMA--RLEIDVVFYSAIIDTLCKNGLMESSIMLLMAMME--KGIKPN 563
Query: 121 -SAYNVIL-------TL-YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS--SLLKLDD 169
+N I+ TL YG G D + + + + + V++ ++N +LK+ +
Sbjct: 564 VVTFNSIIDASQQSPTLEYGVNGSSDAI--DYPIEQSSPIVIDGAFQNKPGEDRILKMFE 621
Query: 170 LESAEK 175
+AEK
Sbjct: 622 QLAAEK 627
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 109/253 (43%), Gaps = 7/253 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ R G T +++M+ + + G F L M G+ + TY + + A A
Sbjct: 236 FERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAK 295
Query: 61 AS-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + K M A+ + D + Y ++ + G+ + A +L + + + V
Sbjct: 296 GEVSFDVVVKFYDEMIAN-GLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDV 354
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN L K G+ D R++E + K V Y ++ K + LE A ++E
Sbjct: 355 FT-YNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYE 413
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +++C D N L+ +Y + G L++A + G V ++ L +GY ++
Sbjct: 414 EMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHG 473
Query: 239 ---QIHKAVEAMK 248
++ + E MK
Sbjct: 474 MYDEVRRLFEEMK 486
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 2/233 (0%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q+M +G+ + + M+ + K G ++ + +ME G+ + TY + ++ Y
Sbjct: 215 QQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSL 274
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D E +L M ++ V+ + V Y + GY K +D+A +L+ +E+
Sbjct: 275 GDVEAAKGVLKFM-SEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDER 333
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V++ Y + GK DD +R+ E+ + +K ++I+ K ++ AE +
Sbjct: 334 AYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRM 393
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
L D+ N L+D YCR G +A NL + +G E V ++ L G
Sbjct: 394 VDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKG 446
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 120/269 (44%), Gaps = 20/269 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + GL+ ++ ++M+ Y+ G ++ + LM +M ++G D + YA
Sbjct: 637 EMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYA--- 693
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKV 119
I KI ++ L + ++Y G K G +D A S +KG
Sbjct: 694 ---AIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFF--SMLSLKGFVPD 748
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N Y ++ Y G D+ R+ E+ ++ + Y +I+ L K ++++ A+++F
Sbjct: 749 NFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFH 808
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + L + N LID YC+ G ++ A L + +G V ++ L G ++
Sbjct: 809 KLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHG 868
Query: 239 QIHKAVEAMKKVLAA--------YQTLVK 259
I ++++ + +++ A Y TLV+
Sbjct: 869 DIERSMKLLNQMIKAGVDSKLIEYCTLVQ 897
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 111/291 (38%), Gaps = 54/291 (18%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD---ASDHEGIDKILTM 73
NS+L K G + +M GI D + ++A+ + G K +
Sbjct: 195 NSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMEN 254
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGK 132
+ +PN+ V Y ++ NGY +G ++ A +LK E KG N Y +++ Y K
Sbjct: 255 LGVEPNI----VTYHSLINGYVSLGDVEAAKGVLKFMSE--KGVSRNVVTYTLLIKGYCK 308
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW-ESQALCYDTRI 191
K D+ AEK+ E AL D R
Sbjct: 309 QCKMDE----------------------------------AEKVLRGMQEEAALVPDERA 334
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
LID YCR G ++ A L++ G + ++ L GY + +IH+A + +
Sbjct: 335 YGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR-- 392
Query: 252 AAYQTLVKW--KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+V W KP S LD + EG A N + + +G PT L
Sbjct: 393 -----MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVL 438
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 110/296 (37%), Gaps = 46/296 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M LGL + NS++ Y K G + + ++ M + + D Y+Y T L Y
Sbjct: 355 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCR 414
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
G+ L DK L +E I+ +
Sbjct: 415 E-----------------------------GHTSEAFNLCDKML------QEGIEPTVL- 438
Query: 121 SAYNVILTLYGKYGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +L + G DD L+IW L K+ V GY ++ L K+++ E A ++++
Sbjct: 439 -TYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKD 497
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
++ N +I C+ G + +AE + + K G ++ L GY + S
Sbjct: 498 ILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASN 557
Query: 240 IHKAV--------EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ +A E + + Y +L+ L D + G G N +
Sbjct: 558 VGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIV 613
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 127/326 (38%), Gaps = 30/326 (9%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM G+ T + YN++LK + G F+ + H M + G+ D Y T L
Sbjct: 427 KMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKME 486
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ EG + + A + + T+ +G K+G + +A + K ++ + +
Sbjct: 487 NFEGASTLWKDILAR-GFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKD-LGCSPDGIT 544
Query: 123 YNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y ++ Y K ++ + ++ + Y ++IS L K L + E
Sbjct: 545 YRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMG 604
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ L + LID +C+ G+L+KA + G ++ + +G + +I
Sbjct: 605 IRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRID 664
Query: 242 KAVEAMKKVL-----AAYQTLVKWK---PSVESLAACLDY-------------------F 274
+A M+K++ ++ +K +++ +A LD
Sbjct: 665 EANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGL 724
Query: 275 KDEGDIGGAENFIELLNDKGFIPTDL 300
G + A F +L+ KGF+P +
Sbjct: 725 CKTGKVDDARRFFSMLSLKGFVPDNF 750
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 135/305 (44%), Gaps = 11/305 (3%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G+ TVVYN +L + + + L+S+ EM GI D T+ T + A A H+
Sbjct: 140 FGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRA--HQV 197
Query: 67 IDKILTMME-ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
++ + E + VA D + T+ G+ + G ++ AL +K ++ + NV
Sbjct: 198 RTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR-VKARMLEMGCSATKVTVNV 256
Query: 126 ILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ Y K G+ +D L I + + Y ++ L + D + A K+ + +
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 316
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N +++ C+NG LE+A+ ++N +G + ++ L +++ +A+
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEAL 376
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DK 303
+ ++V T+ P V + ++ GD A E + + G P ++ +
Sbjct: 377 DLARQV-----TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 431
Query: 304 LLDNV 308
L+DN+
Sbjct: 432 LIDNL 436
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 11/242 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMM 74
YN ++ K G E+ ++++M + G D T+ T ++A + E +D L
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD--LARQ 381
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI---LTLY 130
V+ D + + N KVG D LA+ E + G + YN + L
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVG--DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSL 439
Query: 131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
GK GK D+L+ E + Y +I L K +E AE++F++ + Q + +
Sbjct: 440 GKLGKALDLLKDMESTGCPRSTIT--YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 497
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N LID C++ ++ A L+N +G + + ++ + T Y + I KA + ++ +
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557
Query: 251 LA 252
A
Sbjct: 558 TA 559
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 118/302 (39%), Gaps = 50/302 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M++ G V YN+++ G K L+ +ME G TY T +
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E +++ M+ ++ + + + T+ +G K +D A ++ + + G + N
Sbjct: 474 KMRIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKKIDDAFELINQMISE--GLQPN 530
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN ILT Y K G D++ A I E
Sbjct: 531 NITYNSILTHYCKQG----------------------------------DIKKAADILET 556
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-YYLATGYRQNS 238
+ D LI+ C+ G + A ++ ++KG K++ L + +R+N+
Sbjct: 557 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 616
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY---FKDEGDIGGAENFIELLNDKGF 295
++ L+ ++ + + ++L + + + G I A +F+ + DKGF
Sbjct: 617 --------IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 668
Query: 296 IP 297
IP
Sbjct: 669 IP 670
>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 116/252 (46%), Gaps = 2/252 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM G+ V YN+++ + + N + ++ M E G+ + YTY +
Sbjct: 465 LRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFK 524
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + + +++ M + N+ ++ V+Y T+ NG KVG KA +L E+ +
Sbjct: 525 NHDEQNVLEVVNQMTSS-NIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSC 583
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+YN I+ + K G+ D + + E+ + Y +++ L K + ++ A ++ +E
Sbjct: 584 MSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDE 643
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+++ + D LI +C+ +E A L + +G + L +G+R
Sbjct: 644 MKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGN 703
Query: 240 IHKAVEAMKKVL 251
+ A++ KK+L
Sbjct: 704 MVAALDLYKKML 715
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 7/253 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + G + +V ++ +++ + K G EK +ME G+T + T + +
Sbjct: 363 KMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQ 422
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
HE K+ E+ + I T+ + K G +DKA +L+K E + G V S
Sbjct: 423 KHEEALKLFD--ESFETGLANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSY 480
Query: 123 YNVILTLYGKYGKKDDVLR--IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
NV+L K K D+ R + +K +K N Y +I K D ++ ++ +
Sbjct: 481 NNVMLAHCRK--KNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQM 538
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKA-ENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S + + + +I+ C+ G KA E L N + K + S+ + G+ + +
Sbjct: 539 TSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGE 598
Query: 240 IHKAVEAMKKVLA 252
+ AV A +++ A
Sbjct: 599 MDYAVAAYEEMCA 611
>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Brachypodium distachyon]
Length = 800
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 47/308 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ ++ G V YN++L+++ K GN+ + ++ EMEE+G D TY +YA
Sbjct: 281 FEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYAR 340
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A +E K L M + + + Y T+ YG G +D+ALA+ ++ VN
Sbjct: 341 AGFYEEAAKCLDTMVSK-GILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVN 399
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIFEE 179
+ YN+IL + GK + + +L + ++ N N + ++ +E ++ E
Sbjct: 400 T-YNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLER 458
Query: 180 WESQA--LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+S LC DT N LI Y R G R N
Sbjct: 459 MKSCGVELCRDTF--NTLISAYGR------------------------------CGSRAN 486
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ K + M T + P + + A L +GD A++ I + ++GF P
Sbjct: 487 A--FKMYDEM--------TAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKP 536
Query: 298 TDLQDKLL 305
D+ LL
Sbjct: 537 NDMSYSLL 544
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V++NSML +Y K G + K + +++ G++ D TY + + YA +++ +KIL
Sbjct: 609 VIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKR 668
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
++ + D V Y TV NG+ K GL+ +A +L SE G V TL G Y
Sbjct: 669 LKTS-QLKPDVVSYNTVMNGFCKQGLIKEAQRIL--SEMIADG--VRPCVVTYHTLVGGY 723
Query: 134 GKKDDVLRIWE----LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
++ E + ++ + + YR V+ S K + A E
Sbjct: 724 ASREMFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFDEARGFLYE 773
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 117/259 (45%), Gaps = 29/259 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G YN++L + + G++ S++++M+ G + +Y L +A
Sbjct: 493 EMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGG 552
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI--KGAKVN 120
+ GI+ I + + V WVI T+ K + L ++++ +++ +G K +
Sbjct: 553 NAAGIEAIEKEVY-EGTVFPSWVILRTLVISNFKC----RRLEGIERAFQEVMARGHKPD 607
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLLKLD 168
+N +L++Y K G +Y+KA ++ ++ Y +++ K +
Sbjct: 608 LVIFNSMLSMYAKNG----------MYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSN 657
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
+ AEKI + ++ L D N +++ +C+ GL+++A+ +++ G V +++
Sbjct: 658 ESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYH 717
Query: 229 YLATGYRQNSQIHKAVEAM 247
L GY +A E +
Sbjct: 718 TLVGGYASREMFSEAREVV 736
>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 100/204 (49%), Gaps = 3/204 (1%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
+ V Y+ M+ LY + G FEK + ++ EM N +T DR + +L+ Y E ++I
Sbjct: 114 QAVVAYSVMIALYNREGLFEKSEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEAERI 173
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
+ +E + ++L V Y ++ YGK L DKA +++K E+ + Y+ ++
Sbjct: 174 MDTVE-ESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREE-DLVPDSITYSCMIGAC 231
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
G+ GK + L + E+ + +K ++ + +IS K D+E ++ E + D
Sbjct: 232 GRVGKLKEALSWFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDW 291
Query: 190 RIPNFLIDVYCRNGLLEKAENLVN 213
+ + + Y R GL++ ++N
Sbjct: 292 QTLDAAVRAYDRAGLIKDVTEILN 315
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 3/249 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR+ L ++ Y+ M+ + G ++ S EM+ I + T +S Y
Sbjct: 209 VEKMREEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISLYGK 268
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A D EGI +++T M+ DW Y + GL+ +L + +
Sbjct: 269 AKDVEGIVRVITEMK-KYGCKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDA-GWVEET 326
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+Y +L +Y K + LRI+ +KA + R++I + + + A+ +F+E
Sbjct: 327 GSYGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSLICTFRDAEMFDGAKSVFKE 386
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + +I VY NG +++AE L + + + + + ++ + Y +
Sbjct: 387 MQVAGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMINVYMRCDM 446
Query: 240 IHKAVEAMK 248
A++ K
Sbjct: 447 PEGAIKVYK 455
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M D+G + +N M+ LY K G E+ + ++ G + D+ ++ T + AYA
Sbjct: 524 FQEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALKLAQQFG-SADKISFSTLVHAYAK 582
Query: 61 ASDHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D ++ L M A +L+ Y ++ + YGK G ++K +L + E G ++
Sbjct: 583 KQDFPNMEAALWEMQNAGYGSSLE--AYNSILDAYGKAGQMEKVSDVLARMENS--GMRM 638
Query: 120 N-SAYNVILTLYGK 132
+ ++YN+++ YGK
Sbjct: 639 DLASYNILINTYGK 652
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 10/229 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN M+ +Y + E + MEE+ + D YTY + L + ++I +
Sbjct: 434 YNVMINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLR 493
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV--NSAYNVILTLYGKY 133
+ +V LD V+ V N K L++ M K +E I V N +NV++ LYGK
Sbjct: 494 -NSDVELDEVMCNCVLNTCAKFLPLEE---MHKLFQEMIDVGYVPYNITFNVMIDLYGKA 549
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP- 192
G + + +L ++ + ++ + K D + E WE Q Y + +
Sbjct: 550 GMPERAHKALKLAQQFGSADKISFSTLVHAYAKKQDFPNMEAAL--WEMQNAGYGSSLEA 607
Query: 193 -NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
N ++D Y + G +EK +++ + G + + S+ L Y +N I
Sbjct: 608 YNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMI 656
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++ G + YNS+L Y K G EK+ ++ ME +G+ D +Y ++ Y
Sbjct: 595 EMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNY 654
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVNS 121
++ + M+ + V W Y T+ YG D+A+ K ++ I +V
Sbjct: 655 MIAEMETLFRTMQEEGVVPDRWT-YNTIIRTYGFADYPDRAVYWFKAMQDAGISPDRVT- 712
Query: 122 AYNVILTLYGKYGKKDDVLRIWEL 145
Y ++++ + + G D+ R W L
Sbjct: 713 -YMILVSTFERAGNIDEAAR-WCL 734
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + G+ YN ++ Y K ++++L M+E G+ DR+TY T + Y
Sbjct: 628 LARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGF 687
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103
A + M+ D ++ D V Y + + + + G +D+A
Sbjct: 688 ADYPDRAVYWFKAMQ-DAGISPDRVTYMILVSTFERAGNIDEA 729
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ +++++ Y K +F +++ + EM+ G Y + L AY A E + +L
Sbjct: 571 ISFSTLVHAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLAR 630
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYG 131
ME + + +D Y + N YGK ++ + + + +E+ G + YN I+ YG
Sbjct: 631 ME-NSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQEE--GVVPDRWTYNTIIRTYG 686
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 135/301 (44%), Gaps = 17/301 (5%)
Query: 4 MRDL---GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
RD+ G++ YN +++ G+ EK M +ME+ GI+ + TY T + A
Sbjct: 195 FRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCK 254
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
+ +L M A VA + + Y +V NG G + + ++ E+++G +
Sbjct: 255 KKKVKEAMALLRAM-AVGGVAANLISYNSVINGLCGKGRMSEVGELV----EEMRGKGLV 309
Query: 120 --NSAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN ++ + K G ++ + E+ K + Y +I+ + K +L A +I
Sbjct: 310 PDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEI 369
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F++ + L + R LID +C+ GL+ +A +++ + G V ++ L GY
Sbjct: 370 FDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCF 429
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ +AV ++ ++ P V S + + F E ++G A E + +KG +
Sbjct: 430 LGRVQEAVGILRGMVER-----GLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVL 484
Query: 297 P 297
P
Sbjct: 485 P 485
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 5/247 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR GL V YN+++ + K GN + L+ EM G++ + TY T ++
Sbjct: 300 VEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + +I M + + Y T+ +G+ + GL+++A +L SE + G +
Sbjct: 360 AGNLSRAVEIFDQMRVR-GLRPNERTYTTLIDGFCQKGLMNEAYKVL--SEMIVSGFSPS 416
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN ++ Y G+ + + I + ++ + Y VI+ + +L A ++ E
Sbjct: 417 VVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKE 476
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + DT + LI C L +A +L +G ++ L Y +
Sbjct: 477 EMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDG 536
Query: 239 QIHKAVE 245
++ KA+
Sbjct: 537 ELSKALR 543
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 5/221 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M GL+ V Y +++ K GN + + +M G+ + TY T + +
Sbjct: 335 LSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQ 394
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
K+L+ M + V Y + +GY +G + +A+ +L+ E+ V
Sbjct: 395 KGLMNEAYKVLSEMIVS-GFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVV 453
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S Y+ ++ + + + ++ E + +K V Y ++I L L A +F E
Sbjct: 454 S-YSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFRE 512
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220
+ L D LI+ YC +G L KA L H+++ R
Sbjct: 513 MMRRGLPPDEVTYTSLINAYCVDGELSKALRL--HDEMVQR 551
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 106/255 (41%), Gaps = 24/255 (9%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + + V YN+++ Y G ++ ++ M E G+ D +Y T ++ + + +
Sbjct: 412 GFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERE---L 468
Query: 68 DKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YN 124
K M E + V D V Y+++ G L +A + + E +G + Y
Sbjct: 469 GKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFR--EMMRRGLPPDEVTYT 526
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI-----FE 178
++ Y G+ LR+ E+ ++ N Y +I+ L K + A+++ +E
Sbjct: 527 SLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYE 586
Query: 179 EWESQALCYDTRIPNF----------LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
E + Y+T I N L+ +C GL+ +A+ + + + + +
Sbjct: 587 ESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYN 646
Query: 229 YLATGYRQNSQIHKA 243
+ G+ + +HKA
Sbjct: 647 LMIHGHSRGGNVHKA 661
>gi|296086986|emb|CBI33242.3| unnamed protein product [Vitis vinifera]
Length = 335
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 38/161 (23%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM+++G A + + YN ++ LY G EK+ ++ EM+++ + D ++Y +++Y
Sbjct: 163 LQKMKEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSNVYPDNFSYRICINSYGA 222
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD +G++ +L ME P++ +G G
Sbjct: 223 QSDIQGMENVLKEMERQPHIR----------DGLG------------------------- 247
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVI 161
YN +++LY G K +VLR+W L +K V+ R VI
Sbjct: 248 --YNHLISLYASLGNKAEVLRLWSL-EKNVEAFVGSLRIVI 285
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 118/254 (46%), Gaps = 7/254 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + L + V YNS++ K G + L++ M ENG+ D++TY +
Sbjct: 202 LSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCK 261
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--SEEQIKGAK 118
E + + ++ + + + VIY + +GY K G +D A ++L + +E+ + +
Sbjct: 262 KGRIEEANVLFNSLK-EKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNS- 319
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S YN ++ K K + L + E + +K +K Y +I ++LK D + A +I
Sbjct: 320 --STYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRIL 377
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
++ S D I I +C G +++AE++++ +G ++ + Y
Sbjct: 378 DQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGL 437
Query: 238 SQIHKAVEAMKKVL 251
++ A + +K++
Sbjct: 438 GLLNPAFDVLKRMF 451
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 103/214 (48%), Gaps = 7/214 (3%)
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW- 143
V Y + +G +VG +D+ + + KK E V + Y VI+ + G++ + + ++
Sbjct: 40 VSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRT-YTVIVHALFESGRRMEAINLFS 98
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
E+ ++ + + Y +I+++ K LE +I +E + L N LID YC+ G
Sbjct: 99 EMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEG 158
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
++E A+ +++ + +++ L G+ + +H+A+ + K+L + + PS
Sbjct: 159 MVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLES-----RLTPS 213
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
V + + + G + A + L+N+ G +P
Sbjct: 214 VVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVP 247
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 135/316 (42%), Gaps = 16/316 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + GL + YN+++ Y K G E ++ M N + TY + +
Sbjct: 132 LDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCR 191
Query: 61 ASD-HEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ H + + M+E+ P+V V Y ++ +G K+G LD A +L E G
Sbjct: 192 KKNVHRAMALLSKMLESRLTPSV----VTYNSLIHGQCKIGYLDSAYRLLNLMNEN--GV 245
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ Y+V + K G+ ++ ++ L +K +K Y +I K ++ A
Sbjct: 246 VPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANS 305
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ + ++ ++ N LID C+ +++A L+ KG + V ++ L
Sbjct: 306 LLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAML 365
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ A + +++++ ++P V A + F G+I AE+ + ++ ++G
Sbjct: 366 KEGDFDYAHRILDQMVSS-----GYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGV 420
Query: 296 IPTDLQDKLLDNVQNG 311
+P L L+ + G
Sbjct: 421 MPDALTYTLVIDAYGG 436
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 122/305 (40%), Gaps = 17/305 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KMR+ T Y ++ +++G + +L EM E G + +TY ++A
Sbjct: 62 FKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCK 121
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +IL M + + Y + +GY K G+++ A +L + + N
Sbjct: 122 ETKLEEGRRILDEM-VEKGLVPSVPTYNALIDGYCKEGMVEAAQEIL----DLMHSNSCN 176
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNVISSLLKLDDLESAEKI 176
L + +K +V R L K ++ Y ++I K+ L+SA ++
Sbjct: 177 PNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRL 236
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ D + ID C+ G +E+A L N K KG + + + L GY +
Sbjct: 237 LNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCK 296
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF- 295
++ A + ++L P+ + A +D E + A +E + KG
Sbjct: 297 AGKMDDANSLLDRMLTE-----DCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLK 351
Query: 296 --IPT 298
+PT
Sbjct: 352 CTVPT 356
>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 805
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 12/242 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y+ ++ K G + + H+M NG+ + +T+ A D + + ++ M+
Sbjct: 400 YSILISCLGKCGASAQAIEMFHKMIRNGVAPNAFTFSALFGALTDGAFFDQAMRLFQMIR 459
Query: 76 AD-PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
A PN L+ V+Y V G+ G +D AL +L + E+ Y IL +
Sbjct: 460 ASYPN-ELNVVVYNAVLKYVGRAGRIDAALDLLGQMEQNRNVQPDIVTYGTILDI---CA 515
Query: 135 KKDDVLRIW----ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
KK DV + + K+ ++ N Y ++I + + + AE +F + ++ L YD
Sbjct: 516 KKQDVSLAYAVLDRMRKRGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEYDLF 575
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEK---LKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
I N L+ + R ++E+A + ++G I + A R+ + KA E M
Sbjct: 576 ICNALLGAFARAKMVERAFQAFEEMRSAGVRGDRITFNTLITAAARAREFDKAWKAFETM 635
Query: 248 KK 249
KK
Sbjct: 636 KK 637
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 21/240 (8%)
Query: 2 QKMRDLGLARTT-------VVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYDRYTYCT 53
Q MR + R + VVYN++LK + G + L+ +ME+N + D TY T
Sbjct: 450 QAMRLFQMIRASYPNELNVVVYNAVLKYVGRAGRIDAALDLLGQMEQNRNVQPDIVTYGT 509
Query: 54 RLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
L A D +L M + + YA++ + + GL D+A ++ + Q
Sbjct: 510 ILDICAKKQDVSLAYAVLDRMRKR-GMRPNNFCYASLIDACARAGLPDQAESLFR----Q 564
Query: 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNVISSLLKLDD 169
++ + + L G + + V R ++ +++ G + +I++ + +
Sbjct: 565 LRAEGLEYDLFICNALLGAFARAKMVERAFQAFEEMRSAGVRGDRITFNTLITAAARARE 624
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
+ A K FE + + D N LID ++G+ E A L N + R+ H++ +
Sbjct: 625 FDKAWKAFETMKKSNISADATTYNALIDACSKSGMTELAFALFN----EMRQAHLQPTIF 680
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 90/216 (41%), Gaps = 9/216 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR G+ Y S++ + G ++ +SL ++ G+ YD + L A+A
Sbjct: 527 LDRMRKRGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEYDLFICNALLGAFAR 586
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E + M + V D + + T+ + DKA K+ E +K + ++
Sbjct: 587 AKMVERAFQAFEEMRSA-GVRGDRITFNTLITAAARAREFDKAW----KAFETMKKSNIS 641
Query: 121 ---SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ YN ++ K G + ++ E+ + ++ + +I + KL D+ A ++
Sbjct: 642 ADATTYNALIDACSKSGMTELAFALFNEMRQAHLQPTIFTFNALIGACTKLQDMRRATQV 701
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
+ DT N L+ RN + A +LV
Sbjct: 702 LMLMHGFGVYPDTFTLNILLTACARNEDFDYAISLV 737
>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
Length = 651
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 121/307 (39%), Gaps = 55/307 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K + L +VYNS+++ Y + GN E +++L+ +MEE G + Y T L+ +A+
Sbjct: 224 FEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAE 283
Query: 61 ASDHEGIDKILTMMEADPN------------------VALDWVIYATVGNGYG------- 95
D E ++ P V+ + +IYA + +GY
Sbjct: 284 IRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTA 343
Query: 96 ----------------------------KVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
K G +DKAL +L+ E + + Y IL
Sbjct: 344 AFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIET-YTSIL 402
Query: 128 TLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
Y K G L +++ K A ++ Y +++S L K +E+A + E + +
Sbjct: 403 DGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVV 462
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
RI L + Y R G +EKA + K + I + ++ L + +H A E
Sbjct: 463 PSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEV 522
Query: 247 MKKVLAA 253
+++ A
Sbjct: 523 FQQITDA 529
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 133/320 (41%), Gaps = 29/320 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR + +Y S++ Y + + E + EM GI + +C+ +S YA
Sbjct: 154 FEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYAS 213
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A ++E + +A+ N+ ++Y ++ Y + G ++ A+L + EE+ G + N
Sbjct: 214 AGNNEAAEHWFEKFKAE-NLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEE--GFQGN 270
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYK---------KAVKVLNNG-----------YRN 159
Y +L + + ++ L + K KA+ +L Y
Sbjct: 271 LGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAM 330
Query: 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
++ + D +A K++E+ S L D I N L+ +C+ G ++KA ++ + +
Sbjct: 331 IMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANR 390
Query: 220 REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279
++++ + GY + I KA+E ++ A +P V S + L
Sbjct: 391 LLPTIETYTSILDGYVKGGNIQKALEVFDRIKTA-----GLRPGVVSYNSLLSGLAKARQ 445
Query: 280 IGGAENFIELLNDKGFIPTD 299
+ A + + G +P++
Sbjct: 446 MENARLMLNEMLANGVVPSE 465
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 11/152 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRL-SAYA 59
Q+M+ LA V Y ++LK +G + ++ + G+ +++ TYCT L AYA
Sbjct: 488 FQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYA 547
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL---LDKALA-MLKKSEEQIK 115
A E +++++ ME D D +IY ++ N YG G ++ LA M+K S +Q K
Sbjct: 548 RAGRVEEAEELVSAMERD-GTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTK 606
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYK 147
YN ++ +Y + G + R EL++
Sbjct: 607 --PDIGTYNTLIQVYAQAGF---IPRAEELFQ 633
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 11/216 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++ GL V YNS+L K E +++EM NG+ Y YA
Sbjct: 420 RIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTG 479
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D E + M+ + N+A+D V Y + G + A + ++ + G K N
Sbjct: 480 DVEKAFGVFQRMKKE-NLAIDIVAYGALLKACCNSGAMHGAAEVFQQITD--AGLKHNQI 536
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK-------KAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ L G Y + V EL K ++ N N + +D+E+
Sbjct: 537 TYCTM-LDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLA 595
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ S+ D N LI VY + G + +AE L
Sbjct: 596 KMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEEL 631
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 44/215 (20%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ GL T YN++LK Y KTG+ + +S++ EME +G + D +TY + AYA+
Sbjct: 385 FEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYAN 444
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L MEA G + N
Sbjct: 445 AGRWESARIVLKEMEAS--------------------------------------GVRPN 466
Query: 121 S-AYNVILTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
S ++ IL Y GK+ K VLR E+ V + Y +I + K + L+ A
Sbjct: 467 SYVFSRILASYRDRGKWQKSFQVLR--EMRNSGVSPDRHFYNVMIDTFGKCNCLDHALAT 524
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
F+ + + D N LID +C++G KAE L
Sbjct: 525 FDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEEL 559
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 116/269 (43%), Gaps = 20/269 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G + Y+ ++ Y G +E ++ EME +G+ + Y + L++Y D
Sbjct: 420 VSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRD 479
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L M + V+ D Y + + +GK LD ALA + +++G + +
Sbjct: 480 RGKWQKSFQVLREMR-NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRM--RMEGVQPD 536
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ +N ++ + K G + ++E + + Y +I+S + + E + +
Sbjct: 537 AVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLG 596
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY---R 235
+ +SQ L + + Y GL E+A N + G + V L + R
Sbjct: 597 KMQSQGLLAN-------VVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDR 649
Query: 236 QNSQIHKAVEAMKKV-----LAAYQTLVK 259
++++ ++ MK+ + Y TL+K
Sbjct: 650 RDAEAFSVLQYMKENDLKPDVVTYTTLMK 678
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/334 (20%), Positives = 129/334 (38%), Gaps = 78/334 (23%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR G+ V+ S++ Y + + S + EM+ GI TY ++ +A
Sbjct: 292 FENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAK 351
Query: 61 ASDHEGIDKILTMMEADPNVA-LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D + D + EA + L+ +IY+ + + + + G +D+A ++++ EE A +
Sbjct: 352 INDAQSADNLFK--EAKAKLGDLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPI 409
Query: 120 NS----------------------------------AYNVILTLYGKYGKKDDVLRIW-E 144
++ +Y ++ LY K GK + I E
Sbjct: 410 DAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKE 469
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ +K N Y +IS + L D +A IFEE L D I N LI+ +C+ G
Sbjct: 470 MESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGN 529
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
+++A + +E M+K + +PS
Sbjct: 530 MDRAIRI--------------------------------LEKMQK--------ERMQPSN 549
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ ++ F GD+ A N ++L+ G PT
Sbjct: 550 RAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPT 583
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 9/233 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G A T + YN+++ K E+ S++++M GIT + +TY + YA D
Sbjct: 575 MRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGD 634
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T ++ + + LD IY T+ K G + ALA+ ++ Q K A+ Y
Sbjct: 635 IGKAFEYFTKIK-EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQ-KIARNTFVY 692
Query: 124 NVILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
N+++ + + G DV +L K+ V + Y + I++ K D++ A+K+ EE
Sbjct: 693 NILIDGWARRG---DVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEE 749
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
L + + LI + + L ++A KL G + +++ L T
Sbjct: 750 MADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVT 802
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 125/302 (41%), Gaps = 16/302 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ + + Y ++ LY K G K ++ EME GI ++ TY +S +
Sbjct: 432 FERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIH 491
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D I M + D IY + + K+G +D+A+ +L+K +++ + N
Sbjct: 492 LHDFANAFSIFEEM-LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKE-RMQPSN 549
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK---AVKVLNNGYRNVISSLLKLDDLESAEKIF 177
A+ I+ + G L I +L ++ A V+ Y +I L+K + +E A +
Sbjct: 550 RAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMT--YNALIHGLIKKNQVERAVSVL 607
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ + + ++ Y NG + KA K G ++ V Y T R
Sbjct: 608 NKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDV---YIYETLLRAC 664
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLA--ACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + M+ LA + + K + + +D + GD+ A + ++ + + G
Sbjct: 665 CKSGR----MQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGV 720
Query: 296 IP 297
P
Sbjct: 721 PP 722
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M +AR T VYN ++ + + G+ + LM +M+E+G+ + +TY + ++A A
Sbjct: 678 REMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKA 737
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN- 120
D + K++ M AD + + Y T+ G+ K L D+AL KS E++K A +
Sbjct: 738 GDMQRAQKVIEEM-ADVGLKPNLKTYTTLIKGWAKASLPDRAL----KSFEEMKLAGLKP 792
Query: 121 --SAYNVILT 128
+AY+ ++T
Sbjct: 793 DEAAYHCLVT 802
>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
Length = 469
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 11/226 (4%)
Query: 1 MQKMRDLGLARTTV-VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+ +M+ L + V Y+++LK FE ++SL EM+ IT + T LS Y
Sbjct: 202 LNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYG 261
Query: 60 DASDHEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + ++K+L+ M+E+ + W + T+ + +G G ++ +++K E+ +
Sbjct: 262 KAGKFDEMEKVLSGMLESTSSKPDVWTM-NTILSLFGNKGQIE----IMEKWYEKFRNFG 316
Query: 119 VNSAYNVILTLYGKYGKK---DDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAE 174
+ L G YGKK D + + E +K + Y NVI + + D ++ E
Sbjct: 317 IEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNME 376
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220
F++ ++ + DT+ LI Y GL KAE+L+ E++ R
Sbjct: 377 YTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKAEDLIEMERVFNR 422
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 3/242 (1%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE-NGITYDRYTYCTRLSAYADAS 62
M + G TT +Y ++L Y ++ ++ S++++M+ D +TY T L A DAS
Sbjct: 170 MVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDAS 229
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E ++ + M+ ++ + V V +GYGK G D+ +L E
Sbjct: 230 RFELVESLYEEMDVR-SITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWT 288
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
N IL+L+G G+ + + + +E ++ ++ + +I + K + + E
Sbjct: 289 MNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMR 348
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ T N +I+ + G + E + + +G + K++ L GY H
Sbjct: 349 KLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFH 408
Query: 242 KA 243
KA
Sbjct: 409 KA 410
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+ MR L TT YN++++ + G+ + ++ +M G+ D T+C + YA+
Sbjct: 344 MEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYAN 403
Query: 61 AS------DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDK 102
A D ++++ M+ D + D Y+ + Y K G+ DK
Sbjct: 404 AGLFHKAEDLIEMERVFNRMK-DKHCQPDSTTYSIMVEAYKKEGMNDK 450
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 153/328 (46%), Gaps = 14/328 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T +++ + G EK L+ E GI + YTY T ++AY
Sbjct: 193 FRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLK 252
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G++KIL +M+ D V + V Y + K G ++ ++K ++++ +
Sbjct: 253 HRDFSGVEKILKVMKKD-GVVYNKVTYTLLIELSVKNGKMND----VEKLFDEMRERGIE 307
Query: 121 SAYNVILTLYGKYGKKDDVLRIW----ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
S +V +L +K ++ R + EL +K + ++ Y +I + K+ ++ +AE +
Sbjct: 308 SDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEIL 367
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E +S+ + + N LI+ YCR G++++A + + + KG + V + +A+ + +
Sbjct: 368 MNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNR 427
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ +A + + +++ L S S +D + EG++ A+ ++ K
Sbjct: 428 LKRYDEAKQWLFRMMEGGVRL-----STVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQ 482
Query: 297 PTDLQDKLLDNVQNGKSNLETLRELYGN 324
P + ++ + ++ R+L+ N
Sbjct: 483 PNAITYNVMIYAYCKQGKVKEARKLWAN 510
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G+ +TV Y +++ +Y K GN E+ L EM + + TY + AY
Sbjct: 440 RMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQG 499
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ K+ M+A DP D Y ++ +G +D+A+ + SE +KG
Sbjct: 500 KVKEARKLWANMKANGMDP----DSYTYTSLIHGECIADNVDEAMRLF--SEMGLKGLDQ 553
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSL 164
NS Y V+++ K GK D+ ++ E+ +K + N Y +I S+
Sbjct: 554 NSVTYTVMISGLSKAGKSDEAFGLYDEIKRKGYTIDNKVYTALIGSM 600
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + G + V YN+++ Y K GN + M EM + D T T L
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKV 119
E K+L+ +D V Y T+ GY K G +D+AL + + E++I + V
Sbjct: 466 EKKLEEAYKLLSSARKR-GYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTV 524
Query: 120 NSAYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN I+ + GK + + ++ EL + + Y ++ + D+E A +
Sbjct: 525 --TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHN 582
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + D N L+ C G+LEKA L N KG+ I ++ L T +
Sbjct: 583 KMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEG 642
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ A + ++ + P + A + D G I AE F+ + +KG +P
Sbjct: 643 RLDDAFNLLSEMEEK-----ELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLP 696
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 9/249 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ GL YN ++ Y K G ++ +++ M +N + D +TY ++ +
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCN 325
Query: 61 ASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
E K+ ME N+ L D V Y T+ NG + + +A +L++ E KG K
Sbjct: 326 EGRIEEAFKLRDEME---NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSE--KGVK 380
Query: 119 VNS-AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
N+ +N+++ Y K GK DD I ++ + Y +I+ K ++ A +
Sbjct: 381 PNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRT 440
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+E + + D+ N ++ CR LE+A L++ + +G I S+ L GY +
Sbjct: 441 MDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500
Query: 237 NSQIHKAVE 245
+ + +A++
Sbjct: 501 DGNVDRALK 509
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 21/258 (8%)
Query: 1 MQKMRDL---GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
M+K D+ L + Y ++++ Y GNF+ L EMEE G+ + Y +
Sbjct: 280 MEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGG 339
Query: 58 YA-DASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
D EG M + NVA IY + + YGK G +++A+ + E++
Sbjct: 340 LCKDGRTVEGSSVFENMNKKGCKANVA----IYTALIDAYGKNGNVNEAINLF----ERM 391
Query: 115 KGAKVNS---AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDL 170
KG Y VI+ K G+ D+ + +E K V V Y ++I L K +
Sbjct: 392 KGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRV 451
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
+ AEK FEE + D+ N LID ++G +E+A L + +G + V ++ L
Sbjct: 452 DEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTIL 511
Query: 231 ATGYRQNSQIHKAVEAMK 248
+G + H+ EA+K
Sbjct: 512 ISGLFKE---HRNEEALK 526
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 3/244 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+ ++ G T NS+++ + G E+L + M+E+GI YT+ L+ ++
Sbjct: 180 EFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSM 239
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E +++ +ME + D V Y T+ GY K G KA+ E++ +
Sbjct: 240 FIESAERVFEVMECG-KIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITY 298
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+I Y + G D L ++ E+ ++ +++ + Y VI L K +FE
Sbjct: 299 LTLIQACYSE-GNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMN 357
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + I LID Y +NG + +A NL K +G E ++ + G ++ ++
Sbjct: 358 KKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLD 417
Query: 242 KAVE 245
+AVE
Sbjct: 418 EAVE 421
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 45/286 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M G +Y +++ Y K GN + +L M+ G D TY ++
Sbjct: 353 FENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCK 412
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ +D+ + E D VA++ + Y+++ +G GK G +D+A ++ E +G
Sbjct: 413 SGR---LDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVE--RGCP 467
Query: 119 VNS-AYNVILTLYGKYGK-----------------------------------KDDVLRI 142
+S YN ++ K GK ++ L++
Sbjct: 468 QDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKL 527
Query: 143 WELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
W+L K + +R + L + A KI +E + +T + +I+V C+
Sbjct: 528 WDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPETAFED-MINVLCK 586
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
G E+A L + +GRE+ + L R+ A++ M
Sbjct: 587 AGRTEQACKLADGIVDRGREVPGRVRTILINALRKAGNADLAMKLM 632
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 144/307 (46%), Gaps = 27/307 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA-S 62
M+ GL V YN+++ Y K G+ ++ ++ M++ I D TY ++ +A S
Sbjct: 266 MKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGS 325
Query: 63 DHEGID--KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
EG++ ++ ++ P+V V Y T+ +G ++GL +A ++++ E G K N
Sbjct: 326 IREGLELMDVMKSLKLQPDV----VTYNTLIDGCFELGLSLEAKKLMEQMEND--GVKPN 379
Query: 121 SA-YNVILTLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+N+ L K K+++V R + E++ + ++ Y +I + LK+ DL A +
Sbjct: 380 QVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVT--YHTLIKAYLKVGDLSGALE 437
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E + + +T N ++D C+ +++A NL++ +G + ++ L GY
Sbjct: 438 MMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYF 497
Query: 236 QNSQIHKAVEA---MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+ ++ KA E MK+ +K P+V + + + G A + L +
Sbjct: 498 REEKVEKAFEMWDEMKR--------IKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAE 549
Query: 293 KGFIPTD 299
G +P D
Sbjct: 550 SGLLPDD 556
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 112/246 (45%), Gaps = 8/246 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + V Y++++K Y K G+ +M EM + GI + T T L A +
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCK---ERKV 467
Query: 68 DKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
D+ ++++ +D V Y T+ GY + ++KA M + + +IK + +N
Sbjct: 468 DEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMK-RIKITPTVTTFNS 526
Query: 126 ILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ +GK + + + EL + + + + ++I K +E A + + E +
Sbjct: 527 LIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHS 586
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N L++ C+ G+ EKA N N + RE+ ++ + + + ++ ++ +A
Sbjct: 587 FKPDNYTCNILLNGLCKEGMTEKALNFFN-TLITEREVDTVTYNTMISAFCKDKKLKEAY 645
Query: 245 EAMKKV 250
+ + ++
Sbjct: 646 DLLSEM 651
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 4/247 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M+ L L V YN+++ ++ G + LM +ME +G+ ++ T+ L
Sbjct: 333 MDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCK 392
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + + + + + D V Y T+ Y KVG L AL M+++ + KG K+N
Sbjct: 393 EEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQ--KGIKMN 450
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ N IL K K D+ + + +K+ V Y +I + + +E A ++++
Sbjct: 451 TITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWD 510
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + N LI C +G E A + G ++ + GY +
Sbjct: 511 EMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEG 570
Query: 239 QIHKAVE 245
++ KA E
Sbjct: 571 RVEKAFE 577
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 56 SAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
S+++ AS E D ++ + V+LD + + NGY G L+ AL ML++ +
Sbjct: 181 SSFSIASAREVFDDMVKI-----GVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFN 235
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAE 174
N YN IL K G+ DV + K+ V N Y N++ KL L+ A
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAF 295
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+I E + + D N LI+ C G + + L++
Sbjct: 296 QIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMD 334
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 106/214 (49%), Gaps = 7/214 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+ M+ +G V YN++L +Y K+ ++ ++ EME NG + TY + +SAYA
Sbjct: 127 FKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYAR 186
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D E ++ M+E N LD Y T+ +G+ + G + A+ + +E + G K
Sbjct: 187 DGLLKEAMELKNQMVEGGIN--LDVFTYTTLLSGFVRAGKDESAMRVF--AEMRAAGCKP 242
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIF 177
N +N ++ ++G GK ++++++E K + V + N + ++ + ++S +F
Sbjct: 243 NICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVF 302
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+E + + N LI Y R G ++A ++
Sbjct: 303 KEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDI 336
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/338 (21%), Positives = 133/338 (39%), Gaps = 48/338 (14%)
Query: 1 MQKMRDL---GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
M+ +R++ G + + V YNS++ Y + G ++ L ++M E GI D +TY T LS
Sbjct: 159 MEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSG 218
Query: 58 YADASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
+ A E ++ M A PN+ + GN GK A + K E+I
Sbjct: 219 FVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGN-RGK-------FAEMMKVFEEI 270
Query: 115 KGAKVNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDL 170
K + +N +L ++G+ G +V +++ K+A V + Y +IS+ +
Sbjct: 271 KNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSF 330
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK---LKGREIHVKSW 227
+ A I++ + D N ++ R GL E++E + K K E+ S
Sbjct: 331 DQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSL 390
Query: 228 YYL-ATGYRQNSQIHKAVEAMKKVLAAYQTLVK--------------------------W 260
+ A G + A E V+ + L+K +
Sbjct: 391 LHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGF 450
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
P + +L A L + + +N+ GF P+
Sbjct: 451 SPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPS 488
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 18/288 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM + G T + YN +L +Y K G + K+ L M+ G+ D YTY T ++
Sbjct: 56 FKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCR 115
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S HE + M++ V D V Y + + YGK +A+ +L+ E ++ G
Sbjct: 116 RGSLHEEAAAVFKDMKSMGFVP-DKVTYNALLDVYGKSRRTKEAMEVLR--EMEVNGCSP 172
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ YN +++ Y + G + + + ++ + + + Y ++S ++ ESA ++F
Sbjct: 173 SIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVF 232
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI--HVKSWYYLATGYR 235
E + + N LI ++ G AE + E++K + +W L +
Sbjct: 233 AEMRAAGCKPNICTFNALIKMHGNRGKF--AEMMKVFEEIKNSCCVPDIVTWNTLLAVFG 290
Query: 236 QN---SQIHKAVEAMKKV-----LAAYQTLVKWKPSVESLAACLDYFK 275
QN S++ + MK+ Y TL+ S +D +K
Sbjct: 291 QNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYK 338
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 126/265 (47%), Gaps = 31/265 (11%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + G+ YN++L + G +E+ + + EM++ + TYC+ L AYA+
Sbjct: 338 KRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANG 397
Query: 62 SDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLLDKA-LAMLKKSEEQIKGAK 118
+ I ++L + E + ++ V+ T+ K LL +A +A L E + KG
Sbjct: 398 KE---IGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFL---ELKRKGFS 451
Query: 119 VN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN----NGYRNVISSLLKL------ 167
+ S N +L++YG+ +++ K ++LN +G+ +++ L
Sbjct: 452 PDLSTLNAMLSIYGR----------RQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSR 501
Query: 168 -DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
++ E +E++ +E ++ + DT N +I YCRNG +++A + + + G V +
Sbjct: 502 SENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVIT 561
Query: 227 WYYLATGYRQNSQIHKAVEAMKKVL 251
+ Y +S A++ ++ ++
Sbjct: 562 YNTFVASYAADSMFEDAIDVVRYMI 586
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 135/340 (39%), Gaps = 23/340 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M++ G+ YN+++ + E+ ++ +M+ G D+ TY L Y
Sbjct: 92 FEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGK 151
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ++L ME + + V Y ++ + Y + GLL +A+ + + Q+ +N
Sbjct: 152 SRRTKEAMEVLREMEVN-GCSPSIVTYNSLISAYARDGLLKEAMEL----KNQMVEGGIN 206
Query: 121 ---SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y +L+ + + GK + +R++ E+ K + +I K+
Sbjct: 207 LDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKV 266
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FEE ++ D N L+ V+ +NG+ + + K G ++ L + Y +
Sbjct: 267 FEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSR 326
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+A++ K++L A T P + + A L G +E + D
Sbjct: 327 CGSFDQAMDIYKRMLEAGIT-----PDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCK 381
Query: 297 PTDLQ-DKLLDNVQNGKSNLETLRELYGNSLAGNEETLSG 335
P +L LL NGK G LA EE SG
Sbjct: 382 PNELTYCSLLHAYANGKE--------IGRMLALAEEICSG 413
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 112/283 (39%), Gaps = 13/283 (4%)
Query: 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP 78
++ + K G SL++++ ++G D Y Y + ++A + + ME +
Sbjct: 4 IISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE- 62
Query: 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILTLYGKYGK 135
+ Y + N YGK+G+ +K E +K A V YN ++T +
Sbjct: 63 GCKPTLITYNVILNVYGKMGM---PWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSL 119
Query: 136 KDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
++ +++ K V + Y ++ K + A ++ E E N
Sbjct: 120 HEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNS 179
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
LI Y R+GLL++A L N G + V ++ L +G+ + + A+ ++ AA
Sbjct: 180 LISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAA- 238
Query: 255 QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KP++ + A + + G E + + +P
Sbjct: 239 ----GCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVP 277
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY-ADASDHEG 66
G+ T+ YN+++ Y + G ++ + EM E+G+ D TY T +++Y AD+ +
Sbjct: 519 GIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDA 578
Query: 67 IDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112
ID + M++ PN Y +V +GY K D A+ + E
Sbjct: 579 IDVVRYMIKHGCKPNQN----TYNSVVDGYCKHNHRDDAIMFISSLHE 622
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 121/300 (40%), Gaps = 42/300 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + GL +Y +L+ Y+K+ N EK+ S + M E G+ D Y + +
Sbjct: 581 LHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSS 640
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + +L+++E + + D +IY ++ +G+ K ++KA+ +L
Sbjct: 641 SGHMQAAVSVLSVIEKN-GLVPDSLIYGSLISGFCKAADMEKAVGLLD------------ 687
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
E+ KK ++ + Y +I K DD+ A IF
Sbjct: 688 -----------------------EMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSI 724
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L + LID YC+ G + A +L N +G + LA G + +
Sbjct: 725 ICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDL 784
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+A+ ++++A + + S + F G + F+ ++ DK +P+ L
Sbjct: 785 QQALFITEEMIARGYAI------ISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLL 838
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 36/284 (12%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+DLGLA + N +LK + + L + ME GI+ D YTY T + AY D
Sbjct: 199 MKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRD 258
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-------IKG 116
E K++ M + +L+ V Y T+ G + G +++A K+ E+ G
Sbjct: 259 LESAKKVVEEMR-ETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYG 317
Query: 117 AKVNS---------------------------AYNVILTLYGKYGKKDDVLRIW-ELYKK 148
A +N Y+ ++ + + G D+ +I E+
Sbjct: 318 AIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAA 377
Query: 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
V+ Y N+I L KL + A +I ++ DT N +I+ + R E+A
Sbjct: 378 GVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEA 437
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
L+N + G +V ++ + G Q + +A +++++A
Sbjct: 438 FLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIA 481
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 140/336 (41%), Gaps = 36/336 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G + V YN+++ + G E+ EME+ G+ D +TY ++
Sbjct: 266 VEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCK 325
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +L M PNV V+Y+T+ +G+ + G D+A ++K E G
Sbjct: 326 RGRPDQAKCLLDEMSCAGLMPNV----VVYSTLIDGFMRQGNADEAFKIVK--EMSAAGV 379
Query: 118 KVNSAY--NVI--LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ N N+I L G+ G+ +L+ ++ K Y VI L+ + E A
Sbjct: 380 QPNKITYDNLIRGLCKLGRMGRASRILK--QMTKIGYMADTMTYNLVIEGHLRQHNKEEA 437
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ E + + + +I+ C+ G E+A L+ G + + + L +G
Sbjct: 438 FLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISG 497
Query: 234 YRQNSQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN 285
Y + A E +KK+ L Y +L+ +V + ++Y+
Sbjct: 498 YCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYD---------- 547
Query: 286 FIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLREL 321
E+L +KGF P D L + + NLE +L
Sbjct: 548 --EML-EKGFQPNDFTYGGLIHGYSMAGNLEKAEQL 580
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 11/256 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM L YNS++ G ++ EM E G + +TY + Y+
Sbjct: 511 LKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSM 570
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + E +++L M +PN D+ IYA + GY K L+K + LK E KG
Sbjct: 571 AGNLEKAEQLLHQMLNSGLNPN---DF-IYAQILEGYFKSDNLEKVSSTLKSMLE--KGL 624
Query: 118 KV-NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEK 175
N Y +++ G + + + +K V ++ Y ++IS K D+E A
Sbjct: 625 MPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVG 684
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ +E + + N LID +C++ + A N+ N KG + ++ L GY
Sbjct: 685 LLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYC 744
Query: 236 QNSQIHKAVEAMKKVL 251
+ I A++ ++L
Sbjct: 745 KAGDIRDAIDLYNEML 760
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 134/340 (39%), Gaps = 57/340 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M +G T+ YN +++ + + N E+ L++EM + GI+ + YTY ++
Sbjct: 406 LKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQ 465
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ E +L M AD PN +YA + +GY + G A LKK +
Sbjct: 466 IGESERASGLLEQMIADGLKPNA----FVYAPLISGYCREGSFSLACETLKKMTRENLTP 521
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAV-------------------------- 150
+ YN ++ GK D+ + + E+ +K
Sbjct: 522 DL-YCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQL 580
Query: 151 --KVLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
++LN+G Y ++ K D+LE + + L D R+ +I
Sbjct: 581 LHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSS 640
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV----EAMKKVLAAYQTL 257
+G ++ A ++++ + G + L +G+ + + + KAV E KK +
Sbjct: 641 SGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGI------ 694
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+P + A +D F DI A N + KG P
Sbjct: 695 ---EPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPP 731
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 26/217 (11%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V Y +++ Y K G+ L +EM G+ D + Y + +++ D +
Sbjct: 728 GLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGD---L 784
Query: 68 DKILTMMEADPNVALDWVI---YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ L + E +A + I + T+ +G+ K G L + + L ++ + + N
Sbjct: 785 QQALFITEE--MIARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVEN 842
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+++ L G+ GK + I+ EL +K N +R+ D L S +F + +Q
Sbjct: 843 IVIGL-GEAGKLSEAHTIFVELQQK-----NASHRDT-------DHLSS---LFTDMINQ 886
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220
L I N +I +C+ G L+KA L + KGR
Sbjct: 887 GLVPLDVIHN-MIQSHCKQGYLDKALMLHDALVAKGR 922
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 127/296 (42%), Gaps = 13/296 (4%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
+D + V YN ++ ++ G +K SL EM G++ D TY T + A +
Sbjct: 185 QDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEV 241
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSAY 123
+ + + M + V + V Y T+ +G K +D A + +K + KG K N Y
Sbjct: 242 DRAEDVFQQM-VEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVD--KGVKPSNVTY 298
Query: 124 NVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N I+ K D +++ + + VK + Y +I L K ++ AE +F++
Sbjct: 299 NTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMID 358
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + D +ID C+ +++AE + KG + + ++ L GY Q +
Sbjct: 359 KGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEE 418
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
V+ +K++ A +P V + LDY G A + + + KG P+
Sbjct: 419 VVQRIKEMSAH-----DLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPS 469
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 135/322 (41%), Gaps = 47/322 (14%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + +Y ML Y K G ++ L++ M NGI+ + + T + AYA
Sbjct: 465 GIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYA-------- 516
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
K ++D+ + + K ++Q V + Y ++
Sbjct: 517 ----------------------------KRAMIDEVMHIFIKMKQQGLSPNVVT-YGTLI 547
Query: 128 TLYGKYGKKDD-VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
K G+ DD VL+ ++ + V N + +++ L +D E E++F E +Q +
Sbjct: 548 DALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIR 607
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D N ++ C+ G + +A L++ G + V S+ L G+ S++ +AV+
Sbjct: 608 PDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKL 667
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP-TDLQDKLL 305
+ +++A KP++ S L + G I A + KG P + + +L
Sbjct: 668 LDGMVSA-----GLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTIL 722
Query: 306 DNV-QNGKSNLETLRELYGNSL 326
+ + ++G+ RELY N +
Sbjct: 723 NGLFRSGR--FSEARELYVNMI 742
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 104/252 (41%), Gaps = 8/252 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M + G+ V YN+++ K + + + +M + G+ TY T +
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK 307
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
A + + + M D V D V Y T+ +G K +DKA + ++ + KG K
Sbjct: 308 AQAVDRAEGVFQQM-IDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMID--KGVKPD 364
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N Y +I+ K D +++ + K VK N Y +I L E + +
Sbjct: 365 NLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIK 424
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN- 237
E + L D L+D C+NG +A +L + KG + V + + GY +
Sbjct: 425 EMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKG 484
Query: 238 --SQIHKAVEAM 247
S++H + M
Sbjct: 485 ALSEMHDLLNLM 496
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 128/296 (43%), Gaps = 13/296 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++R+ G T +YN +L F+ ++ + M+ +G + YTY L A +
Sbjct: 139 RIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNN 198
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+G K+L M ++ D V Y TV + K+G +++A E I+ S
Sbjct: 199 RVDGACKLLVEM-SNKGCEPDVVSYTTVISSMSKLGKVEEA------RELSIRFQPNVSV 251
Query: 123 YNVILTLYGK-YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN ++ + + Y K+ L + ++ +K + Y VISSL + ++E A ++ +
Sbjct: 252 YNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMF 311
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + L+ Y G + +A N+ N +G E +V ++ L G + ++
Sbjct: 312 VRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMG 371
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+AV K+ P+V + A +D F GD+ GA + G IP
Sbjct: 372 EAVSVSSKMERN-----GCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIP 422
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 117/276 (42%), Gaps = 19/276 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G V YN+++ G + S+ +ME NG + + TY + +A A
Sbjct: 344 RMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAG 403
Query: 63 DHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAK 118
D G +I M + PNV V+Y ++ N + + +A ++++K S +
Sbjct: 404 DLVGASEIWNKMMTNGCIPNV----VVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNT 459
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW---ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
V +N + G+ + + ++ E Y + + Y V+ LLK + ++ A +
Sbjct: 460 V--TFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNI--KTYNEVLDGLLKENRIKEALE 515
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E E + + + N + +C G E+A L+ + G + ++ L Y
Sbjct: 516 LVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYC 575
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACL 271
++ A++ + K+ A KW P V + + L
Sbjct: 576 MQGKVKTAIQLLDKLSAGG----KWVPEVAAYTSLL 607
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM TV +N+ +K +G E +L +ME+ G + + TY L
Sbjct: 447 IEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLK 506
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + +++T ME + + L+ V Y T+ G+ VG ++AL +L K + G K +
Sbjct: 507 ENRIKEALELVTEME-EKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKM--LVGGVKPD 563
Query: 121 S-AYNVILTLYGKYGKKDDVLRI 142
+ YN + Y GK +++
Sbjct: 564 AITYNTLTYAYCMQGKVKTAIQL 586
>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Brachypodium distachyon]
Length = 512
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y++++K F+ +D++ EM E G+ + T LS Y A + ++K+L+ M
Sbjct: 231 TYSTLIKALVDASRFDLVDAMYKEMAERGVAPNTVTQNIVLSGYGRAGRMDDMEKLLSAM 290
Query: 75 ----EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
+ P+V +I + GN G+V L++K E+ +G + + L
Sbjct: 291 LDSTASKPDVWTMNIILSLFGNS-GQVDLMEKWY-------EKFRGYGIEPETRTLNILI 342
Query: 131 GKYGKK---DDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
G YGKK D + + E +K A + Y NVI + + D ++ E+ F + S+ +
Sbjct: 343 GAYGKKRMYDKMSAVMEFMRKLAFPWTTSTYNNVIEAFAEAGDEKNMEQTFNQMRSEGMK 402
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLV 212
DT+ LI+ + + GL K +V
Sbjct: 403 PDTKTFCCLINGFSKAGLFHKVVGMV 428
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+ MR L TT YN++++ + + G+ + ++ ++M G+ D T+C ++ ++
Sbjct: 358 MEFMRKLAFPWTTSTYNNVIEAFAEAGDEKNMEQTFNQMRSEGMKPDTKTFCCLINGFSK 417
Query: 61 ASDHE---GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A G+ K+ ++ N + + A G + +++ +K ++ A
Sbjct: 418 AGLFHKVVGMVKLAERLDVPANTSFHNSVLAACARA-GDLVEMERVFRHMK----HVQCA 472
Query: 118 KVNSAYNVILTLYGKYGKKDDV 139
+ Y++++ Y K G D V
Sbjct: 473 PDATTYSILVEAYRKEGMTDKV 494
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 141/342 (41%), Gaps = 48/342 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSA---- 57
++R G+ T V YN +L +Y + G ++ ++ +L+ EM G+ D +T T ++A
Sbjct: 114 ELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRD 173
Query: 58 -------------------------------YADASDHEGIDKILTMMEADPNVALDWVI 86
+ A ++ ++L ME D D V
Sbjct: 174 GLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEME-DSGCQPDAVT 232
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
Y + Y + G ++A L KG N+ YN ++T Y G+ D+ L +++
Sbjct: 233 YNELAGTYARAGFFEEAAKCLDTMTS--KGLLPNTFTYNTVMTAYANVGRVDEALALFDR 290
Query: 146 YKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNG 203
KK V N N Y + L K + ++ EE S++ C R+ N ++ V + G
Sbjct: 291 MKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM-SRSGCTPNRVTWNTMLAVCGKRG 349
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
+ + ++N K G E+ ++ L + Y + A + +++++ + P
Sbjct: 350 MEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISS-----GFTPC 404
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
+ + A L+ +GD A++ + + GF P D LL
Sbjct: 405 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLL 446
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 14/266 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G V YN + Y + G FE+ + M G+ + +TY T ++AYA+
Sbjct: 218 LKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 277
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-G 116
+ + M+ + PNV +I +G +G + AML+ EE + G
Sbjct: 278 VGRVDEALALFDRMKKNGYVPNVNTYNLI-------FGMLGKKSRFTAMLEMLEEMSRSG 330
Query: 117 AKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAE 174
N +N +L + GK G +D V R+ K V++ + Y +IS+ + A
Sbjct: 331 CTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAF 390
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+++E S N L++V R G A+++V+ G + + +S+ L Y
Sbjct: 391 KMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCY 450
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKW 260
+ +E+++K + W
Sbjct: 451 AKGGNA-AGIESIEKEVYVGTIFPSW 475
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G V +N+ML + K G + + +++ M+ G+ R TY T +SAY
Sbjct: 323 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 382
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
K+ M + Y + N + G A +++ K + G K N
Sbjct: 383 CGSRTYAFKMYDEMISS-GFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKN--GFKPN 439
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y+++L Y K G + I E+Y + R ++ + K LE EK F+
Sbjct: 440 DQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQ 499
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E ++Q D I N ++ +Y +NGL KA + + K G + ++ L Y +++
Sbjct: 500 EVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSN 559
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +A + +K++ ++ + KP V S ++ F +G I A+ + + G P
Sbjct: 560 ESWEAEKILKQLKSS-----QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAP 613
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 25/207 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+++ G V++NSML +Y K G + K + ++++G++ D TY + + YA
Sbjct: 498 FQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAK 557
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKV 119
+++ +KIL +++ V D V Y TV NG+ K GL+ +A +L SE G A
Sbjct: 558 SNESWEAEKILKQLKSS-QVKPDVVSYNTVINGFCKQGLIKEAQRIL--SEMIADGMAPC 614
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLLKLD 168
Y+ TL G Y E++ +A +V+N YR V+ S K
Sbjct: 615 VVTYH---TLVGGYAS-------LEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAK 664
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFL 195
+ A + E +D ++ + L
Sbjct: 665 RYDEAREFLSEISDTDQNFDQKLQHML 691
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 113/259 (43%), Gaps = 29/259 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G YN++L + + G++ S++ +M +NG + +Y L YA
Sbjct: 395 EMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGG 454
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ GI+ I + + WVI T+ K + L ++K+ +++K
Sbjct: 455 NAAGIESIEKEVYVG-TIFPSWVILRTLVIANFKC----RRLEGVEKAFQEVKAQGYKPD 509
Query: 122 --AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLLKLD 168
+N +L +Y K G LY KA ++ ++ Y +++ K +
Sbjct: 510 LVIFNSMLAMYAKNG----------LYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSN 559
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
+ AEKI ++ +S + D N +I+ +C+ GL+++A+ +++ G V +++
Sbjct: 560 ESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYH 619
Query: 229 YLATGYRQNSQIHKAVEAM 247
L GY ++A E +
Sbjct: 620 TLVGGYASLEMFNEAREVV 638
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 105/260 (40%), Gaps = 8/260 (3%)
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
H+ + +L M P LD Y TV + + G ++AL + + Q + + Y
Sbjct: 69 HDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVT-Y 127
Query: 124 NVILTLYGKYGK--KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
NV+L +YG+ G+ V + E+ V+ + VI++ + L+ A FE+ +
Sbjct: 128 NVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLK 187
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
++ N L+ V+ + G +A ++ + G + ++ LA Y +
Sbjct: 188 ARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFE 247
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
+A + + + T P+ + + + + G + A + + G++P
Sbjct: 248 EAAKCLDTM-----TSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNT 302
Query: 302 DKLLDNVQNGKSNLETLREL 321
L+ + KS + E+
Sbjct: 303 YNLIFGMLGKKSRFTAMLEM 322
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 9/246 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ TVVY +++ + K G+ +EM IT D TY +S + D
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI 126
K+ M + D V + + NGY K G + A + + G N Y +
Sbjct: 406 GKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA--GCSPNVVTYTTL 462
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ K G D + E++K ++ Y ++++ L K ++E A K+ E+E+ L
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
DT L+D YC++G ++KA+ ++ KG + + ++ L G+ +H +E
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF----CLHGMLE 578
Query: 246 AMKKVL 251
+K+L
Sbjct: 579 DGEKLL 584
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 141/342 (41%), Gaps = 14/342 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ GL + +Y S++ L + + + EM GI D Y T + +
Sbjct: 304 IEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK 363
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D K M + ++ D + Y + +G+ ++G + +A + E KG + +
Sbjct: 364 RGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFH--EMFCKGLEPD 420
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
S + ++ Y K G D R+ +A N Y +I L K DL+SA ++
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E L + N +++ C++G +E+A LV + G ++ L Y ++
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 540
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++ KA E +K++L +P++ + ++ F G + E + + KG P
Sbjct: 541 EMDKAQEILKEMLGK-----GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 595
Query: 299 DLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDT 340
L ++NL+ +Y + + GP+G T
Sbjct: 596 ATTFNSLVKQYCIRNNLKAATAIYKDMCSRG----VGPDGKT 633
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 119/250 (47%), Gaps = 7/250 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G + V Y +++ K G+ + + L+HEM + G+ + +TY + ++ + +
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E K++ EA + D V Y T+ + Y K G +DKA +LK E KG +
Sbjct: 507 IEEAVKLVGEFEA-AGLNADTVTYTTLMDAYCKSGEMDKAQEILK--EMLGKGLQPTIVT 563
Query: 123 YNVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+NV++ + +G +D ++ W L K + + +++ ++L++A I+++
Sbjct: 564 FNVLMNGFCLHGMLEDGEKLLNWML-AKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 622
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S+ + D + L+ +C+ +++A L K KG + V ++ L G+ + +
Sbjct: 623 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKF 682
Query: 241 HKAVEAMKKV 250
+A E ++
Sbjct: 683 LEAREVFDQM 692
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 119/325 (36%), Gaps = 45/325 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ ++G+ YN ++ + G ++ L+ ME G T D +Y
Sbjct: 234 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISY--------- 284
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+TV NGY + G LDK +++ + KG K N
Sbjct: 285 ---------------------------STVVNGYCRFGELDKVWKLIEVMKR--KGLKPN 315
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y I+ L + K + + E+ ++ + Y +I K D+ +A K F
Sbjct: 316 SYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFY 375
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S+ + D +I +C+ G + +A L + KG E ++ L GY +
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A ++ A P+V + +D EGD+ A + + G P
Sbjct: 436 HMKDAFRVHNHMIQA-----GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490
Query: 299 DLQDKLLDNVQNGKSNLETLRELYG 323
+ N N+E +L G
Sbjct: 491 IFTYNSIVNGLCKSGNIEEAVKLVG 515
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI--FEE 179
++V + +G + R++E VL+ NV + L D ++A I F E
Sbjct: 177 VFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFRE 236
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ +C++ N +I C+ G +++A +L+ +LKG V S+ + GY + +
Sbjct: 237 FPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGE 296
Query: 240 IHKA---VEAMKK 249
+ K +E MK+
Sbjct: 297 LDKVWKLIEVMKR 309
>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 21/259 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR Y +++ + + G EK + + +++E+G+ D Y Y + +Y+ A
Sbjct: 289 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 348
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
G +I ++M+ +P D Y + + YG+ GL A A+ E++K +
Sbjct: 349 YPYGAAEIFSLMQHMGCEP----DRASYNIMVDAYGRAGLHSDAEAVF----EEMKRLGI 400
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN---VISSLL----KLDDLES 172
+ L Y K DV + + K+ + NG V++S+L +L
Sbjct: 401 APTMKSHMLLLSAYSKARDVTKCEAIVKE---MSENGVEPDTFVLNSMLNLYGRLGQFTK 457
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
EKI E E+ D N LI++Y + G LE+ E L K K V +W
Sbjct: 458 MEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIG 517
Query: 233 GYRQNSQIHKAVEAMKKVL 251
Y + K +E ++++
Sbjct: 518 AYSRKKLYVKCLEVFEEMI 536
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ LG+A T + +L Y K + K ++++ EM ENG+ D + + L+ Y
Sbjct: 392 FEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGR 451
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDK 102
++KIL ME P A D Y + N YGK G L++
Sbjct: 452 LGQFTKMEKILAEMENGPCTA-DISTYNILINIYGKAGFLER 492
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ T V NSML LY + G F K++ ++ EME T D TY ++ Y
Sbjct: 427 VKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGK 486
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
A E I+++ ++ + N D V + + Y + L K L + ++
Sbjct: 487 AGFLERIEELFVELK-EKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEE 534
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 125/306 (40%), Gaps = 26/306 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+R + +N ++ Y + +++ +SL ++ E+ TY + AY A
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 205
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGY-----GKVGLLDKALAMLKKSEEQIK 115
E + +L M+ P I TV N Y + G ++A+ + ++ + +
Sbjct: 206 IERAEVVLVEMQNHHVSPK-----TIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRD-R 259
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
YN+++ LYGK K +++ E+ K Y ++++ + E AE
Sbjct: 260 CKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAE 319
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+IFE+ + L D + N L++ Y R G A + + + G E S+ + Y
Sbjct: 320 EIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 379
Query: 235 RQ---NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ +S E MK++ A P+++S L + D+ E ++ ++
Sbjct: 380 GRAGLHSDAEAVFEEMKRLGIA--------PTMKSHMLLLSAYSKARDVTKCEAIVKEMS 431
Query: 292 DKGFIP 297
+ G P
Sbjct: 432 ENGVEP 437
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 5/229 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ TVVY +++ + K G+ +EM IT D TY +S + D
Sbjct: 789 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 848
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI 126
K+ M + D V + + NGY K G + A + + G N Y +
Sbjct: 849 GKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA--GCSPNVVTYTTL 905
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ K G D + E++K ++ Y ++++ L K ++E A K+ E+E+ L
Sbjct: 906 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 965
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
DT L+D YC++G ++KA+ ++ KG + + ++ L G+
Sbjct: 966 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 1014
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 141/342 (41%), Gaps = 14/342 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ GL + +Y S++ L + + + EM GI D Y T + +
Sbjct: 747 IEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK 806
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D K M + ++ D + Y + +G+ ++G + +A + E KG + +
Sbjct: 807 RGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFH--EMFCKGLEPD 863
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
S + ++ Y K G D R+ +A N Y +I L K DL+SA ++
Sbjct: 864 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 923
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E L + N +++ C++G +E+A LV + G ++ L Y ++
Sbjct: 924 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 983
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++ KA E +K++L +P++ + ++ F G + E + + KG P
Sbjct: 984 EMDKAQEILKEMLGK-----GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 1038
Query: 299 DLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDT 340
L ++NL+ +Y + + GP+G T
Sbjct: 1039 ATTFNSLVKQYCIRNNLKAATAIYKDMCSRG----VGPDGKT 1076
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 119/250 (47%), Gaps = 7/250 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G + V Y +++ K G+ + + L+HEM + G+ + +TY + ++ + +
Sbjct: 890 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 949
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E K++ EA + D V Y T+ + Y K G +DKA +LK E KG +
Sbjct: 950 IEEAVKLVGEFEA-AGLNADTVTYTTLMDAYCKSGEMDKAQEILK--EMLGKGLQPTIVT 1006
Query: 123 YNVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+NV++ + +G +D ++ W L K + + +++ ++L++A I+++
Sbjct: 1007 FNVLMNGFCLHGMLEDGEKLLNWML-AKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 1065
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S+ + D + L+ +C+ +++A L K KG + V ++ L G+ + +
Sbjct: 1066 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKF 1125
Query: 241 HKAVEAMKKV 250
+A E ++
Sbjct: 1126 LEAREVFDQM 1135
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 119/325 (36%), Gaps = 45/325 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ ++G+ YN ++ + G ++ L+ ME G T D +Y
Sbjct: 677 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISY--------- 727
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+TV NGY + G LDK +++ + KG K N
Sbjct: 728 ---------------------------STVVNGYCRFGELDKVWKLIEVMKR--KGLKPN 758
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y I+ L + K + + E+ ++ + Y +I K D+ +A K F
Sbjct: 759 SYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFY 818
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S+ + D +I +C+ G + +A L + KG E ++ L GY +
Sbjct: 819 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 878
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A ++ A P+V + +D EGD+ A + + G P
Sbjct: 879 HMKDAFRVHNHMIQA-----GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 933
Query: 299 DLQDKLLDNVQNGKSNLETLRELYG 323
+ N N+E +L G
Sbjct: 934 IFTYNSIVNGLCKSGNIEEAVKLVG 958
>gi|147840633|emb|CAN68320.1| hypothetical protein VITISV_032192 [Vitis vinifera]
Length = 416
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
+++++ Y G F+ ++MEE G ++ LSA + + + K +
Sbjct: 112 STLIRSYGIAGMFQHALRTFNQMEELGTPRSSISFNALLSACNQSKLFDQVPKFFEEIPR 171
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGK 135
+ D + Y + Y + GL DKA++MLK+ EE KG ++ + + IL K G+
Sbjct: 172 RYGIXPDKISYGILVKSYCESGLSDKAISMLKEMEE--KGVEITAVTFTTILDALYKQGQ 229
Query: 136 KDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
D ++W E+ KK L+ G NV D E+ + + +E + L DT N+
Sbjct: 230 SDRAEKVWHEMAKKG--CLDVGAYNVKIMFAHGGDPENVKALIDEMSNAGLKPDTISYNY 287
Query: 195 LIDVYCRNGLLEKAENL 211
L+ YC++G++++A+ +
Sbjct: 288 LMTSYCKSGMMDEAKKV 304
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 20/209 (9%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G+ + Y ++K Y ++G +K S++ EMEE G+ T+ T L A
Sbjct: 171 RRYGIXPDKISYGILVKSYCESGLSDKAISMLKEMEEKGVEITAVTFTTILDALYKQGQS 230
Query: 65 EGIDKILTMMEADPNVALDW----VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +K+ M + + +++A G+ L+D E G K +
Sbjct: 231 DRAEKVWHEMAKKGCLDVGAYNVKIMFAHGGDPENVKALID---------EMSNAGLKPD 281
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ +YN ++T Y K G D+ +++ EL + +R +I L + D E+ K+F+
Sbjct: 282 TISYNYLMTSYCKSGMMDEAKKVYAELEETGCHPNAATFRTLIYYLCRSGDFETGYKVFK 341
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEK 207
+ + +IP+F + GL++K
Sbjct: 342 QS-----AFRRKIPDFGTLRHLVEGLVQK 365
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 38/244 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR G+ V+ S++ Y + S EM+ GI TY +S +
Sbjct: 300 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGK 359
Query: 61 ASDHEGIDKILTMMEADPNVA-LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D + D + EA N+ L+ +IY+ + + + + G +D+A ++ + EE A +
Sbjct: 360 INDTQSADNLFK--EAKTNLGDLNGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPI 417
Query: 120 NS----------------------------------AYNVILTLYGKYGKKDDVLRIW-E 144
++ +Y ++ LY K GK + I E
Sbjct: 418 DAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKE 477
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ +K N Y +IS + L D +A +IFEE L D I N LI+ +C+ G
Sbjct: 478 MESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGN 537
Query: 205 LEKA 208
+++A
Sbjct: 538 MDRA 541
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 9/233 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G A T + YN+++ + E+ S++++M GIT + +TY + YA D
Sbjct: 583 MRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGD 642
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T ++ + + LD IY T+ K G + ALA+ ++ Q K A+ Y
Sbjct: 643 IAKAFEYFTKIK-EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQ-KIARNTFVY 700
Query: 124 NVILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
N+++ + + G DV +L K+ V + Y + I++ K D++ A+ + +E
Sbjct: 701 NILIDGWARRG---DVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDE 757
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
L + + LI + R L ++A KL G + +++ L T
Sbjct: 758 MSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVT 810
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 19/272 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M GL +YN +++ + K GN ++ ++ +M++ + + + +A
Sbjct: 510 FEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAV 569
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A D + IL +M A + Y + +G + +++A+++L K I G N
Sbjct: 570 AGDMKRALDILDLMRRS-GCAPTVMTYNALIHGLIRKNQVERAVSVLNKM--SIAGITPN 626
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEK 175
Y +I+ Y G D+ + +E + K +K+ Y ++ + K ++SA
Sbjct: 627 EHTYTIIMRGYAATG---DIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALA 683
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG--REIHVKSWYYLATG 233
+ E SQ + +T + N LID + R G + +A +L+ K G IH + Y A
Sbjct: 684 VTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACC 743
Query: 234 YRQNSQIHKAV------EAMKKVLAAYQTLVK 259
+ Q + V +K L Y TL+K
Sbjct: 744 KAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIK 775
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M +AR T VYN ++ + + G+ + LM +M+E+G+ + +TY + ++A A
Sbjct: 686 REMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKA 745
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN- 120
D + ++ M +D + + Y T+ G+ + L D+AL + E ++ G K +
Sbjct: 746 GDMQRAQTVIDEM-SDVGLKPNLKTYTTLIKGWARASLPDRALKCFE--EMKLAGLKPDE 802
Query: 121 SAYNVILT 128
+AY+ ++T
Sbjct: 803 AAYHCLVT 810
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 129/285 (45%), Gaps = 12/285 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+N+M+ Y K GN + + ++ + G+ D +TY + + + ++G+D +
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCR---NKGVDNAYEVFL 253
Query: 76 ADPN--VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
P + V Y + +G + G +++AL + E V + Y V++
Sbjct: 254 IMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRT-YTVLIYALSGS 312
Query: 134 GKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
G+K + L ++ E+ +K + + Y +I L K + ++ A K+ E + L
Sbjct: 313 GRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTY 372
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
N LID YC+ G+++ A +++ + + +++ L G + ++HKA+ + K+L
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE 432
Query: 253 AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K PS+ + + + D+ A + L+N+ G +P
Sbjct: 433 R-----KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVP 472
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 117/254 (46%), Gaps = 13/254 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + L+ + + YNS++ K + E L+ M ENG+ D++TY S + D
Sbjct: 427 LNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY----SVFID 482
Query: 61 ASDHEG-IDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
EG +++ T+ ++ V + VIY + +GY KVG +D A ++L E + A
Sbjct: 483 TLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLL---ERMLNDA 539
Query: 118 KVNSA--YNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ ++ YNV++ K K K+ + ++ VK Y +I +LK + A
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHAL 599
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+F S D + Y G+LE+ ++++ +G + ++ L GY
Sbjct: 600 KVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY 659
Query: 235 RQNSQIHKAVEAMK 248
+ H+A + +K
Sbjct: 660 ARLGLTHRAFDFLK 673
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 105/232 (45%), Gaps = 3/232 (1%)
Query: 22 LYYKTGNFEKLDSL--MHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPN 79
+Y +G+ K+++L +EM+E G + +TY + + + K+L+ M ++
Sbjct: 306 IYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEM-SEKG 364
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139
+ V Y + +GY K G++D A +L E G + +I L K +
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424
Query: 140 LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199
+ ++ ++ + Y ++I K++DLESA ++ L D + ID
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484
Query: 200 CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
C+ G +E+A L + K KG + + + L GY + +I A ++++L
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERML 536
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 131/300 (43%), Gaps = 12/300 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + GL + V YN+++ Y K G + ++ ME N + TY +
Sbjct: 357 LSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCK 416
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
H+ + + M+E + +L + Y ++ +G KV L+ A +L E G
Sbjct: 417 KRKVHKAMALLNKMLERKLSPSL--ITYNSLIHGQCKVNDLESAYRLLSLMNEN--GLVP 472
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ Y+V + K G+ ++ +++ K K VK Y +I K+ ++ A +
Sbjct: 473 DQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLL 532
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + A ++ N LI+ C+ +++A +LV G + V ++ L ++
Sbjct: 533 ERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKD 592
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A++ +++ + ++P V + A L + +G + ++ I +N++G +P
Sbjct: 593 GAFDHALKVFNHMVS-----LGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILP 647
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 44/217 (20%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS- 62
M LG Y + L Y+ G E++D ++ +M E GI D TY + YA
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
H D + M++ +L V +L K L+ + +E ++S
Sbjct: 665 THRAFDFLKCMVDTGCKPSLYI------------VSILIKNLSHENRMKETRSEIGIDSV 712
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
NV D+ +W K + E A K+FE+
Sbjct: 713 SNV---------NSVDIADVW----------------------KTLEYEIALKLFEKMVE 741
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
D I LI +C+ LE+A+ LV+H K +G
Sbjct: 742 HGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERG 778
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 129/301 (42%), Gaps = 8/301 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G++ T V + ++ Y K N + EM++ GI TY + +S
Sbjct: 252 LKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 311
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E K++ ME D ++ + + + V G+ K G++ A + E+ V
Sbjct: 312 EGKVEEGVKLMEEME-DLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDV- 369
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN+++ +Y + GK +D + + E + KK + Y +I+ + D SA + +E
Sbjct: 370 VIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDE 429
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + D N LI C G + KA L++ G E + ++ + G+
Sbjct: 430 MKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGN 489
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I A E ++ + + +V + + YF G + A + + + DK +P
Sbjct: 490 IKSAYEIRTRM-----EKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544
Query: 300 L 300
+
Sbjct: 545 I 545
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 129/301 (42%), Gaps = 8/301 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G++ T V + ++ Y K N + EM++ GI TY + +S
Sbjct: 252 LKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 311
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E K++ ME D ++ + + + V G+ K G++ A + E+ V
Sbjct: 312 EGKVEEGVKLMEEME-DLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDV- 369
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN+++ +Y + GK +D + + E + KK + Y +I+ + D SA + +E
Sbjct: 370 VIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDE 429
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + D N LI C G + KA L++ G E + ++ + G+
Sbjct: 430 MKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGN 489
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I A E ++ + + +V + + YF G + A + + + DK +P
Sbjct: 490 IKSAYEIRTRM-----EKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544
Query: 300 L 300
+
Sbjct: 545 I 545
>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Cucumis sativus]
Length = 580
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T YN +L + +G E+ + M+ + + D +Y T LSAY +
Sbjct: 336 FEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVN 395
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKG 116
ASD EG + ++ D PNV V Y T+ GY K+ L+K M+K+ EE ++ G
Sbjct: 396 ASDMEGAENFFRRLKQDGFRPNV----VTYGTLIKGYAKINNLEK---MIKRYEEMKVNG 448
Query: 117 AKVNSAYNVILTLYGKYGKKDD 138
+VN ++ T+ YGK D
Sbjct: 449 IRVNQT--ILTTIMDAYGKNKD 468
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 10/233 (4%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+++ ++ ++ K GN+EK + EM G+ TY + +S ++++ + KI M
Sbjct: 248 MFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSF---ETNYKEVSKIYDQM 304
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA--KVNSAYNVILTLYGK 132
+ + D V YA + + YGK ++ALA+ EE + + AYN++L +
Sbjct: 305 Q-RAGLQPDVVSYALLISAYGKARREEEALAVF---EEMLDAGIRPTHKAYNILLDAFAI 360
Query: 133 YGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
G + +++ K+ + Y ++S+ + D+E AE F + +
Sbjct: 361 SGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVT 420
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
LI Y + LEK K+ G ++ + Y +N AV
Sbjct: 421 YGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGSAV 473
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 61/339 (17%), Positives = 136/339 (40%), Gaps = 34/339 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNF----EKLDSLMHEMEENGITYDRYTYCTRLS 56
++M+ G + + Y MLK + + F E DSL+++ E+ + D+ + +
Sbjct: 196 FRRMQSGGPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNK-EKPVLKPDQKMFHMIIY 254
Query: 57 AYADASDHEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
+ A ++E K+ M A P + + + Y +V K +Q+
Sbjct: 255 MFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVS----------KIYDQM 304
Query: 115 KGAKVNS---AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDL 170
+ A + +Y ++++ YGK ++++ L ++E + ++ + Y ++ + +
Sbjct: 305 QRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMV 364
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
E A+ +F+ + D ++ Y +E AEN K G +V ++ L
Sbjct: 365 EQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTL 424
Query: 231 ATGYRQNSQIHKAVEAMKKV----LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
GY + + + K ++ +++ + QT+ L +D + D G A +
Sbjct: 425 IKGYAKINNLEKMIKRYEEMKVNGIRVNQTI---------LTTIMDAYGKNKDFGSAVIW 475
Query: 287 IELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNS 325
+ G P +L ++ L+ +L G S
Sbjct: 476 FNEIESCGLRPDQKAKNILLSLAKTAEELDEANQLVGYS 514
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 58/298 (19%), Positives = 116/298 (38%), Gaps = 49/298 (16%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G A V + ++++ Y + + +++ M+ G TY L + + S
Sbjct: 164 MNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIMLKTFVEGSK 223
Query: 64 HEGIDKILTMM--EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKVN 120
+ +++ + + P + D ++ + + K G +KA + +E +G +
Sbjct: 224 FKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVF--AEMAARGVPQTT 281
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +++ Y +V +I++ ++A ++ Y +IS+ K E A +FEE
Sbjct: 282 VTYNSLMSFETNY---KEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEE 338
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + N L+D + +G++E+A+ I KS
Sbjct: 339 MLDAGIRPTHKAYNILLDAFAISGMVEQAK------------IVFKS------------- 373
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
MK+ + P + S L + + D+ GAENF L GF P
Sbjct: 374 -------MKRD--------RCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRP 416
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 22/287 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+ RDLG +N+M+ + G L + G D+YT+ L A A+
Sbjct: 565 RRRDLG------SWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLE 618
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D + I ++E D + T+ Y K G L A + +E K
Sbjct: 619 DLDAGRMIHGLVEKG-GFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQE-----KDVVC 672
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+N +L Y + D L++++ + + V ++ Y +++ +L +E +KI + +
Sbjct: 673 WNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLK 732
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ DTR+ N LI++Y R G L A+ + EK+ R+I+ SW L GY QN Q +
Sbjct: 733 EAGMETDTRVSNSLIEMYSRCGCLCSAKQVF--EKMLSRDIN--SWNALIAGYCQNGQGN 788
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
A+E + +L A ++V P+ + + L + G+ A +F+E
Sbjct: 789 IALEYYELMLRA--SIV---PNKATFTSILSSYAQLGEEEQAFDFLE 830
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 15/240 (6%)
Query: 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI-WELYKKAVKV 152
Y K G ++ A + + E+ K ++N +++ Y +G+ + + +++ ++ +K
Sbjct: 145 YSKCGSIEDANNVFQAMED-----KDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKP 199
Query: 153 LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
N + +++S+ LE E+I D + LI++YC+ G LE A +
Sbjct: 200 NQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVF 259
Query: 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272
N + RE +V SW + +GY Q+ +A+ +K++ + +P+ S A+ L
Sbjct: 260 N----EMRERNVVSWTAMISGYVQHGDSREALALFRKLIRS-----GIQPNKVSFASILG 310
Query: 273 YFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEET 332
+ D+G + G L L ++ + +L R+++ N + N T
Sbjct: 311 ACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTT 370
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 105/240 (43%), Gaps = 25/240 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q M D + V +N+M+ Y G ++ L ++M+ G+ ++ T+ + LSA
Sbjct: 158 FQAMED----KDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQS 213
Query: 61 ASDHEGIDKILTMM-----EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
E ++I + + E+D NV+ + N Y K G L+ A + + E
Sbjct: 214 PIALEFGEQIHSRIAKAGYESDVNVSTALI------NMYCKCGSLELARKVFNEMRE--- 264
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ ++ +++ Y ++G + L ++ +L + ++ + +++ + +DL
Sbjct: 265 --RNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGL 322
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+ + L + + N LI +Y R G L A + ++ R ++ +W + GY
Sbjct: 323 KLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNL----RSLNRTTWNAMIAGY 378
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 90/204 (44%), Gaps = 10/204 (4%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
L RTT +N+M+ Y G E+ L ME+ G D++TY + L+ AD +D +
Sbjct: 366 LNRTT--WNAMIA-GYGEGLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGK 422
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILT 128
++ + + A D + + + Y K G ++A +K Q+ V S +N ++
Sbjct: 423 ELHSQI-ASTGWQTDLTVATALISMYAKCGSPEEA----RKVFNQMPERNVIS-WNAFIS 476
Query: 129 LYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
++ + + + ++ + V + + +++S +DLE I + +
Sbjct: 477 CCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLS 536
Query: 188 DTRIPNFLIDVYCRNGLLEKAENL 211
+ + N LI +Y R G L A +
Sbjct: 537 NNHVANALISMYGRCGNLADAREV 560
>gi|302798621|ref|XP_002981070.1| hypothetical protein SELMODRAFT_444770 [Selaginella moellendorffii]
gi|300151124|gb|EFJ17771.1| hypothetical protein SELMODRAFT_444770 [Selaginella moellendorffii]
Length = 1138
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 9/278 (3%)
Query: 35 LMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGY 94
L E ++ G+ D Y L A E ++K+ + + P + + N Y
Sbjct: 823 LAKEAQKLGVELDMCFYNLLLPAKFRVQGLEDVEKLYATITS-PRDRTRFFTCLAMANIY 881
Query: 95 GKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILTLYGKYGKKDDVLRIWELYKKAVK 151
G DK L ML+ ++ ++ + YNV++++Y V R WE K+ +
Sbjct: 882 VSAGRNDKVLEMLELIDQGMEAGTIVKQRRRYNVLISMYASLEDGARVERTWERLKQQRQ 941
Query: 152 VLNNGYRNVISSLLKLDDLESAEKIFEEWES--QALCYDTRIPNFLIDVYCRNGLLEKAE 209
Y +I + KL + AE IF+ E+ ++L Y T + N ++ VY G+ E+AE
Sbjct: 942 PNTEDYCCIIRAWGKLGHVVRAETIFQVAEANEKSLKYST-VFNAMMFVYSVAGMREEAE 1000
Query: 210 NLVNHEKLK-GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268
LV + + G ++ +++L Y + I K + ++ A + ++ P +L
Sbjct: 1001 GLVRRMEYELGVKLDPWCYHHLVLLYAKAGDIGKMLSTLRAAQACGKKERRFTPLAATLW 1060
Query: 269 ACLDYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLL 305
A L+ D GD+ AE + G+ + T L ++LL
Sbjct: 1061 AALNTLADAGDVDTAEETLTRWKRSGYRVTTGLYNRLL 1098
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 115/256 (44%), Gaps = 16/256 (6%)
Query: 87 YATVGNGYGKVGLLDKA---LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW 143
Y+ + Y G+ DKA L +++K+ +Q K+ Y++++++Y +D + R+W
Sbjct: 290 YSMMAASYLSAGMHDKAQNLLEVIEKAMDQGSFPKLRRTYHILISMYSTMKNRDGMERVW 349
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
KK + Y +I S + D++ SAEK F+E + + L + L+ VY G
Sbjct: 350 ---KKIEDLKAQDYVAMIESCGRADEVGSAEKYFKEADRKGLLNQPSLFAALLGVYAGKG 406
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
+KAE L K + ++Y+ I +AVE ++ AA + +P
Sbjct: 407 QADKAEKLFKKMKEQDVSRDALCYHYIILANLNARNIDRAVEILELAEAAGMRDGRSRPF 466
Query: 264 VESLAACLDYF-KDEGDIGGAENFIELLND--KGFIPTDLQ--DKLLDNVQNGKSNLET- 317
+ + L ++ GD+ AE LL D KG TD+ + LL ++
Sbjct: 467 LGTFCDVLKTIARETGDVALAET---LLADWRKGKYRTDIAVYNHLLRVYLKAGKQVQGP 523
Query: 318 -LRELYGNSLAGNEET 332
L+ L GN++ ET
Sbjct: 524 FLKRLAGNNMKPTRET 539
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 119/302 (39%), Gaps = 16/302 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + GL YN ++ + K G + L EM+ G TY L A A
Sbjct: 161 MLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR 220
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA- 122
K+ M D + D Y+T+ NG GK G +++A + ++ + +G V+
Sbjct: 221 VGAARKLFHKMTGD-GCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVD--RGVAVDLVN 277
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN +L K G D R+W+L K K + ++ +L K + ++A ++F
Sbjct: 278 YNSLLATLAKAGNMD---RVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFA 334
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
D N LID Y R G +A ++ G K++ L +
Sbjct: 335 RMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDG 394
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
Q+ +A ++++ A +P V + +D G+ A + + DKG P
Sbjct: 395 QVDEAFAVLEEMETA-----GCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPD 449
Query: 299 DL 300
L
Sbjct: 450 TL 451
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 5/208 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G + V YN +L G L H+M +G + D YTY T ++ +
Sbjct: 195 EMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSG 254
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
E K+ M D VA+D V Y ++ K G +D+ ++K E KG ++
Sbjct: 255 RVEEAHKVFREM-VDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMK--EMSRKGFHPDAF 311
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++N I+ GK K D ++ + + K Y +I S + D A ++ EE
Sbjct: 312 SFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEM 371
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+T+ N LI +G +++A
Sbjct: 372 VEAGFIPETKTYNSLIHWLATDGQVDEA 399
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 120/287 (41%), Gaps = 16/287 (5%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMM 74
YN +++ + ++G + + EM+ G D YTY ++A A E M+
Sbjct: 103 YNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAML 162
Query: 75 EA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
E PN+ Y + + + KVG LD AL + +E + +G + + YN++L
Sbjct: 163 ERGLTPNIP----TYNLLMDAFRKVGQLDMALGLF--AEMKRRGFQPSVVTYNILLDALC 216
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ +++ ++ + Y +++ L K +E A K+F E + + D
Sbjct: 217 SAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLV 276
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N L+ + G +++ L+ KG S+ + + ++ A E ++
Sbjct: 277 NYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARM 336
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + KP + S +D + GD A +E + + GFIP
Sbjct: 337 VES-----GCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIP 378
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 12/205 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+A V YNS+L K GN +++ LM EM G D +++ T + A
Sbjct: 263 FREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGK 322
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
A+ + ++ M + D + Y + + Y + G +A ML EE ++ +
Sbjct: 323 ANKPDAAREVFARM-VESGCKPDLISYNILIDSYARFGDAAQARQML---EEMVEAGFIP 378
Query: 120 -NSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN ++ G+ D+ + E + A + Y ++ L K + + A ++F
Sbjct: 379 ETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLF 438
Query: 178 EEW-----ESQALCYDTRIPNFLID 197
++ E L Y RI D
Sbjct: 439 QQMKDKGVEPDTLSYAVRIDGLAFD 463
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 95/226 (42%), Gaps = 7/226 (3%)
Query: 98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNG 156
G+LD +LK+ + + + N+ +I T YG+ K D ++ + A +
Sbjct: 9 GILDPLETLLKEMVAEGRPLRPNTLVKLI-TAYGRGNKSGDAFDLFNQAESFACSPTVHA 67
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
+ +I L+ + E AE ++++ + D N LI + R+G L+ A + K
Sbjct: 68 FTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMK 127
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
+KG E ++ +L + ++ +A +L T P++ + +D F+
Sbjct: 128 IKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLT-----PNIPTYNLLMDAFRK 182
Query: 277 EGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY 322
G + A + +GF P+ + +L + + R+L+
Sbjct: 183 VGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLF 228
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 141/342 (41%), Gaps = 48/342 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSA---- 57
++R G+ T V YN +L +Y + G ++ ++ +L+ EM G+ D +T T ++A
Sbjct: 205 ELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRD 264
Query: 58 -------------------------------YADASDHEGIDKILTMMEADPNVALDWVI 86
+ A ++ ++L ME D D V
Sbjct: 265 GLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEME-DSGCQPDAVT 323
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
Y + Y + G ++A L KG N+ YN ++T Y G+ D+ L +++
Sbjct: 324 YNELAGTYARAGFFEEAAKCLDTMTS--KGLLPNTFTYNTVMTAYANVGRVDEALALFDR 381
Query: 146 YKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNG 203
KK V N N Y + L K + ++ EE S++ C R+ N ++ V + G
Sbjct: 382 MKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM-SRSGCTPNRVTWNTMLAVCGKRG 440
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
+ + ++N K G E+ ++ L + Y + A + +++++ + P
Sbjct: 441 MEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISS-----GFTPC 495
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
+ + A L+ +GD A++ + + GF P D LL
Sbjct: 496 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLL 537
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 14/266 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G V YN + Y + G FE+ + M G+ + +TY T ++AYA+
Sbjct: 309 LKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 368
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-G 116
+ + M+ + PNV +I +G +G + AML+ EE + G
Sbjct: 369 VGRVDEALALFDRMKKNGYVPNVNTYNLI-------FGMLGKKSRFTAMLEMLEEMSRSG 421
Query: 117 AKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAE 174
N +N +L + GK G +D V R+ K V++ + Y +IS+ + A
Sbjct: 422 CTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAF 481
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+++E S N L++V R G A+++V+ G + + +S+ L Y
Sbjct: 482 KMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCY 541
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKW 260
+ +E+++K + W
Sbjct: 542 AKGGN-AAGIESIEKEVYVGTIFPSW 566
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G V +N+ML + K G + + +++ M+ G+ R TY T +SAY
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
K+ M + Y + N + G A +++ K + G K N
Sbjct: 474 CGSRTYAFKMYDEMISS-GFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKN--GFKPN 530
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y+++L Y K G + I E+Y + R ++ + K LE EK F+
Sbjct: 531 DQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQ 590
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E ++Q D I N ++ +Y +NGL KA + + K G + ++ L Y +++
Sbjct: 591 EVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSN 650
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +A + +K++ ++ + KP V S ++ F +G I A+ + + G P
Sbjct: 651 ESWEAEKILKQLKSS-----QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAP 704
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 25/207 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+++ G V++NSML +Y K G + K + ++++G++ D TY + + YA
Sbjct: 589 FQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAK 648
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKV 119
+++ +KIL +++ V D V Y TV NG+ K GL+ +A +L SE G A
Sbjct: 649 SNESWEAEKILKQLKSS-QVKPDVVSYNTVINGFCKQGLIKEAQRIL--SEMIADGMAPC 705
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLLKLD 168
Y+ TL G Y E++ +A +V+N YR V+ S K
Sbjct: 706 VVTYH---TLVGGYAS-------LEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAK 755
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFL 195
+ A + E +D ++ + L
Sbjct: 756 RYDEAREFLSEISDTDQNFDQKLQHML 782
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 113/259 (43%), Gaps = 29/259 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G YN++L + + G++ S++ +M +NG + +Y L YA
Sbjct: 486 EMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGG 545
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ GI+ I + + WVI T+ K + L ++K+ +++K
Sbjct: 546 NAAGIESIEKEVYVG-TIFPSWVILRTLVIANFKC----RRLEGVEKAFQEVKAQGYKPD 600
Query: 122 --AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLLKLD 168
+N +L +Y K G LY KA ++ ++ Y +++ K +
Sbjct: 601 LVIFNSMLAMYAKNG----------LYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSN 650
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
+ AEKI ++ +S + D N +I+ +C+ GL+++A+ +++ G V +++
Sbjct: 651 ESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYH 710
Query: 229 YLATGYRQNSQIHKAVEAM 247
L GY ++A E +
Sbjct: 711 TLVGGYASLEMFNEAREVV 729
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 58/306 (18%), Positives = 122/306 (39%), Gaps = 9/306 (2%)
Query: 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD 77
S+LK +G++E +L+ + G D + A H+ + +L M
Sbjct: 115 SLLKALELSGHWEWALALLRWASDEGAA-DAAALEMVVRALGREGQHDVVCDLLDEMPLP 173
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK-- 135
P LD Y TV + + G ++AL + + Q + + YNV+L +YG+ G+
Sbjct: 174 PGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVT-YNVVLDVYGRMGRSW 232
Query: 136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195
V + E+ V+ + VI++ + L+ A FE+ +++ N L
Sbjct: 233 PRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL 292
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ 255
+ V+ + G +A ++ + G + ++ LA Y + +A + + +
Sbjct: 293 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM----- 347
Query: 256 TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNL 315
T P+ + + + + G + A + + G++P L+ + KS
Sbjct: 348 TSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRF 407
Query: 316 ETLREL 321
+ E+
Sbjct: 408 TAMLEM 413
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 15/242 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN +L+ G+ ++ SL + G+ DR TY T +S A H+ +D L +++
Sbjct: 161 YNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLA---KHDQLDNALDLLD 217
Query: 76 ADPN--VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI---KGAKVNSA-YNVILTL 129
PN V D V Y + +G + G+ +KA+ K EQ+ GA N A Y V+L
Sbjct: 218 EMPNYGVQADAVCYNALLSGCFRTGMFEKAM----KVWEQLVRDPGASPNLATYKVMLDG 273
Query: 130 YGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
K G+ + +W + + Y +I L + D++SA +++ + L D
Sbjct: 274 LCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLD 333
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ N LI +C G +A + G + ++ + G + + +A E +K
Sbjct: 334 VSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATELLK 392
Query: 249 KV 250
++
Sbjct: 393 QL 394
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 125/304 (41%), Gaps = 17/304 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEM-EENGITYDRYTYCTRLSAYA 59
+ +M + G+ V YN++L ++TG FEK + ++ + G + + TY L
Sbjct: 216 LDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLC 275
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ ++ + M A+ N D V Y + +G + G +D A + + +K V
Sbjct: 276 KLGRFKEAGEVWSRMMAN-NHQADTVTYGILIHGLCRSGDVDSA---ARVYSDMVKAGLV 331
Query: 120 --NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S YN ++ + + G+ + + W+ + Y + LL + A ++
Sbjct: 332 LDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELL 391
Query: 178 EEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
++ E+ A C ++ LI C NG +A ++ + G E+ V S+ + + +
Sbjct: 392 KQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCK 451
Query: 237 NSQIHKAVEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ + H A E Y+ +VK KP+ A ++ F I A + G
Sbjct: 452 DGRTHDANE-------VYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNG 504
Query: 295 FIPT 298
PT
Sbjct: 505 CCPT 508
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 109/251 (43%), Gaps = 3/251 (1%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M GL VYNS++K + + G + +GI TY D+
Sbjct: 325 MVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGM 383
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
++L +E D + + D V + T+ +G + G ++A +L+ + + V S Y
Sbjct: 384 VSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFS-Y 442
Query: 124 NVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ ++ + K G+ D +++ + K K ++ Y +I+ ++ + A KI+ E S
Sbjct: 443 SSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTS 502
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
C N LID C+ ++A +L +G + ++++ L G ++ ++
Sbjct: 503 NGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDV 562
Query: 243 AVEAMKKVLAA 253
A+ ++L A
Sbjct: 563 ALRIWDEILDA 573
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 141/342 (41%), Gaps = 48/342 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSA---- 57
++R G+ T V YN +L +Y + G ++ ++ +L+ EM G+ D +T T ++A
Sbjct: 205 ELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRD 264
Query: 58 -------------------------------YADASDHEGIDKILTMMEADPNVALDWVI 86
+ A ++ ++L ME D D V
Sbjct: 265 GLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEME-DSGCQPDAVT 323
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
Y + Y + G ++A L KG N+ YN ++T Y G+ D+ L +++
Sbjct: 324 YNELAGTYARAGFFEEAAKCLDTMTS--KGLLPNTFTYNTVMTAYANVGRVDEALALFDR 381
Query: 146 YKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNG 203
KK V N N Y + L K + ++ EE S++ C R+ N ++ V + G
Sbjct: 382 MKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM-SRSGCTPNRVTWNTMLAVCGKRG 440
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
+ + ++N K G E+ ++ L + Y + A + +++++ + P
Sbjct: 441 MEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISS-----GFTPC 495
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
+ + A L+ +GD A++ + + GF P D LL
Sbjct: 496 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLL 537
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 14/266 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G V YN + Y + G FE+ + M G+ + +TY T ++AYA+
Sbjct: 309 LKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 368
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-G 116
+ + M+ + PNV +I +G +G + AML+ EE + G
Sbjct: 369 VGRVDEALALFDRMKKNGYVPNVNTYNLI-------FGMLGKKSRFTAMLEMLEEMSRSG 421
Query: 117 AKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAE 174
N +N +L + GK G +D V R+ K V++ + Y +IS+ + A
Sbjct: 422 CTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAF 481
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+++E S N L++V R G A+++V+ G + + +S+ L Y
Sbjct: 482 KMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCY 541
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKW 260
+ +E+++K + W
Sbjct: 542 AKGGN-AAGIESIEKEVYVGTIFPSW 566
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G V +N+ML + K G + + +++ M+ G+ R TY T +SAY
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
K+ M + Y + N + G A +++ K + G K N
Sbjct: 474 CGSRTYAFKMYDEMISS-GFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKN--GFKPN 530
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y+++L Y K G + I E+Y + R ++ + K LE EK F+
Sbjct: 531 DQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQ 590
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E ++Q D I N ++ +Y +NGL KA + + K G + ++ L Y +++
Sbjct: 591 EVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSN 650
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +A + +K++ ++ + KP V S ++ F +G I A+ + + G P
Sbjct: 651 ESWEAEKILKQLKSS-----QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAP 704
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 25/207 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+++ G V++NSML +Y K G + K + ++++G++ D TY + + YA
Sbjct: 589 FQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAK 648
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKV 119
+++ +KIL +++ V D V Y TV NG+ K GL+ +A +L SE G A
Sbjct: 649 SNESWEAEKILKQLKSS-QVKPDVVSYNTVINGFCKQGLIKEAQRIL--SEMIADGMAPC 705
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLLKLD 168
Y+ TL G Y E++ +A +V+N YR V+ S K
Sbjct: 706 VVTYH---TLVGGYAS-------LEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAK 755
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFL 195
+ A + E +D ++ + L
Sbjct: 756 RYDEAREFLSEISDTDQNFDQKLQHML 782
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 113/259 (43%), Gaps = 29/259 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G YN++L + + G++ S++ +M +NG + +Y L YA
Sbjct: 486 EMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGG 545
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ GI+ I + + WVI T+ K + L ++K+ +++K
Sbjct: 546 NAAGIESIEKEVYVG-TIFPSWVILRTLVIANFKC----RRLEGVEKAFQEVKAQGYKPD 600
Query: 122 --AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLLKLD 168
+N +L +Y K G LY KA ++ ++ Y +++ K +
Sbjct: 601 LVIFNSMLAMYAKNG----------LYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSN 650
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
+ AEKI ++ +S + D N +I+ +C+ GL+++A+ +++ G V +++
Sbjct: 651 ESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYH 710
Query: 229 YLATGYRQNSQIHKAVEAM 247
L GY ++A E +
Sbjct: 711 TLVGGYASLEMFNEAREVV 729
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 58/306 (18%), Positives = 122/306 (39%), Gaps = 9/306 (2%)
Query: 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD 77
S+LK +G++E +L+ + G D + A H+ + +L M
Sbjct: 115 SLLKALELSGHWEWALALLRWASDEGAA-DAAALEMVVRALGREGQHDVVCDLLDEMPLP 173
Query: 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK-- 135
P LD Y TV + + G ++AL + + Q + + YNV+L +YG+ G+
Sbjct: 174 PGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVT-YNVVLDVYGRMGRSW 232
Query: 136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195
V + E+ V+ + VI++ + L+ A FE+ +++ N L
Sbjct: 233 PRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL 292
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ 255
+ V+ + G +A ++ + G + ++ LA Y + +A + + +
Sbjct: 293 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM----- 347
Query: 256 TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNL 315
T P+ + + + + G + A + + G++P L+ + KS
Sbjct: 348 TSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRF 407
Query: 316 ETLREL 321
+ E+
Sbjct: 408 TAMLEM 413
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 9/253 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M G+ T+VY +++ + K G+ +EM IT D TY +S +
Sbjct: 762 FSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 821
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D K+ M + D + + + NGY K G + A + + G N
Sbjct: 822 IGDMVEAGKLFHEMLCR-GLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQA--GCSPN 878
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y ++ K G D + E++K ++ Y ++++ L K ++E A K+
Sbjct: 879 VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG 938
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E+E+ L DT L+D YC++G ++KA+ ++ KG + + ++ L G+
Sbjct: 939 EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGF---- 994
Query: 239 QIHKAVEAMKKVL 251
+H +E +K+L
Sbjct: 995 CLHGMLEDGEKLL 1007
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/342 (20%), Positives = 139/342 (40%), Gaps = 14/342 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM+ GL + Y S++ L + + + EM GI D Y T + +
Sbjct: 727 IEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCK 786
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D K M + ++ D + Y + +G+ ++G + +A + E +G + +
Sbjct: 787 RGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFH--EMLCRGLEPD 843
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
+ ++ Y K G D R+ +A N Y +I L K DL+SA ++
Sbjct: 844 IITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 903
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E L + N +++ C++G +E+A LV + G ++ L Y ++
Sbjct: 904 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 963
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++ KA E + ++L +P++ + ++ F G + E + + KG P
Sbjct: 964 EMDKAQEILTEMLGK-----GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 1018
Query: 299 DLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDT 340
L ++NL+ +Y + + E P+G T
Sbjct: 1019 ATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVE----PDGKT 1056
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 117/250 (46%), Gaps = 7/250 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G + V Y +++ K G+ + + L+HEM + G+ + +TY + ++ + +
Sbjct: 870 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 929
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E K++ EA + D V Y T+ + Y K G +DKA +L +E KG +
Sbjct: 930 IEEAVKLVGEFEAA-GLNADTVTYTTLMDAYCKSGEMDKAQEIL--TEMLGKGLQPTIVT 986
Query: 123 YNVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+NV++ + +G +D ++ W L K + + ++ ++L++A I+++
Sbjct: 987 FNVLMNGFCLHGMLEDGEKLLNWML-AKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDM 1045
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S+ + D + L+ +C +++A L K KG + V ++ L G+ + +
Sbjct: 1046 CSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKF 1105
Query: 241 HKAVEAMKKV 250
+A E ++
Sbjct: 1106 VEAREIFDQM 1115
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 120/325 (36%), Gaps = 45/325 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ ++G+ YN ++ + G + L+ ME G T D +Y
Sbjct: 657 FREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISY--------- 707
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+TV NGY + G LDK +++K ++ KG K N
Sbjct: 708 ---------------------------STVINGYCRFGELDKVWKLIEKMKQ--KGLKPN 738
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y I+ L + K + + E+ + + Y ++ K D+ +A K F
Sbjct: 739 SYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFY 798
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S+ + D +I +C+ G + +A L + +G E + ++ L GY +
Sbjct: 799 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAG 858
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
I A ++ A P+V + +D EGD+ A + + G P
Sbjct: 859 HIKDAFRVHNHMIQA-----GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 913
Query: 299 DLQDKLLDNVQNGKSNLETLRELYG 323
+ N N+E +L G
Sbjct: 914 IFTYNSIVNGLCKSGNIEEAVKLVG 938
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 11/224 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M +GL YNS++ K+GN E+ L+ E E G+ D TY T + AY
Sbjct: 902 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 961
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + + +ILT M P + V + + NG+ G+L+ +L + KG
Sbjct: 962 SGEMDKAQEILTEMLGKGLQPTI----VTFNVLMNGFCLHGMLEDGEKLL--NWMLAKGI 1015
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N + +N ++ Y I+ ++ + V+ Y N++ +++ A
Sbjct: 1016 APNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWF 1075
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+F+E + + + LI + + +A + + + G
Sbjct: 1076 LFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDG 1119
>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 114/269 (42%), Gaps = 43/269 (15%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+V+ NS +K G+ +++ +L +M + GI+ + T + A+ DA + I T
Sbjct: 142 SVLMNSAVK---GGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITT 198
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME NV + VIY + + YG+VG L++A ++ + E +G + N YN ++T Y
Sbjct: 199 EME-KLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRE--RGIQPNVGTYNALITGYL 255
Query: 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
+ K + AE + EE E+ L D
Sbjct: 256 EAKPKRQFV-------------------------------VAEGLIEEMEASGLYPDVVT 284
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
L+ Y GL E+AE + N K +G + + S+ L Y + KA A + +
Sbjct: 285 FTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIR 344
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDI 280
P+VE+ A LD ++ GD+
Sbjct: 345 KQ-----GVNPTVETYTALLDAYRRAGDL 368
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 113/249 (45%), Gaps = 14/249 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M L + V+YN ++ Y + G E+ + LM EM E GI + TY ++ Y +A
Sbjct: 199 EMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAK 258
Query: 63 DHEGI---DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ ++ MEA + D V + + YG GL ++A + + + +G +
Sbjct: 259 PKRQFVVAEGLIEEMEAS-GLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKA--RGVQP 315
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIF 177
NS +Y ++ Y + + R +E+ +K V Y ++ + + DLE + +
Sbjct: 316 NSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAV- 374
Query: 178 EEWESQAL--CYDTRIPNF-LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
W+S + C TR+ ++D + + G ++A +L+ K +G + + + L Y
Sbjct: 375 --WKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSY 432
Query: 235 RQNSQIHKA 243
+ + KA
Sbjct: 433 MRGGRHVKA 441
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 12/226 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG---NFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
M +MR+ G+ YN+++ Y + F + L+ EME +G+ D T+ L A
Sbjct: 232 MTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGA 291
Query: 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
Y E +++ M+A V + Y + N Y + +KA ++ E I+
Sbjct: 292 YGHEGLTEQAEQVFNRMKAR-GVQPNSYSYTALINAYAERRCPEKA----ARAFEMIRKQ 346
Query: 118 KVNSA---YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESA 173
VN Y +L Y + G + V +W+ K + Y ++ + K + A
Sbjct: 347 GVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEA 406
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ EE+++Q D + N L++ Y R G KA +++ K G
Sbjct: 407 RDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAG 452
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 6/160 (3%)
Query: 142 IWELYKKAVKVLNNGYRNVISSLLKL----DDLESAEKIFEEWESQALCYDTRIPNFLID 197
+W LY+ V+ + +V + +K L+ A I E E + ++ I N LID
Sbjct: 158 VWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILID 217
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
Y R G LE+AE L+ + +G + +V ++ L TGY + + V A + L
Sbjct: 218 AYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVA--EGLIEEMEA 275
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P V + L + EG AE + +G P
Sbjct: 276 SGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQP 315
>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Glycine max]
Length = 682
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 7/232 (3%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ++K+ K G FEK L+ M G++ DR TY T + A + D ++ M
Sbjct: 151 YNVLMKVMCKKGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMR 210
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--SEEQIKGAKVNSAYNVILTLYGKY 133
+ V D V Y + +G+ K G KA M ++ EE + + V +YNV+++ K
Sbjct: 211 -ERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVV--SYNVMISGLCKC 267
Query: 134 GKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
G+ + L IWE KK + + Y +I L + DL A K++EE + + D
Sbjct: 268 GRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTC 327
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
N +++ C+ G +E+ L E K +V+S+ G +N ++ A+
Sbjct: 328 NAMLNGLCKAGNVEECFELW-EEMGKCSLRNVRSYNIFLKGLFENGKVDDAM 378
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 116/288 (40%), Gaps = 44/288 (15%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+ V YN M+ K G F + + M++N D +TY + ++A D G K+
Sbjct: 253 SVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVY 312
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLY 130
M V D V + NG K G +++ + EE K + N +YN+ L
Sbjct: 313 EEM-VGRGVRPDVVTCNAMLNGLCKAGNVEECFELW---EEMGKCSLRNVRSYNIFLKGL 368
Query: 131 GKYGKKDDVLRIWE---------------------LYKKAVKVLNN-------------G 156
+ GK DD + +W+ +A++VL
Sbjct: 369 FENGKVDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFA 428
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y ++I++L K L+ A+ + E + +++ + N LID + ++ L+ A +
Sbjct: 429 YSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMS 488
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
KG + V S+ L G + + +A + + ++L WKP +
Sbjct: 489 GKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEK-----GWKPDI 531
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 8/252 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ V N+ML K GN E+ L EM + + R +Y L +
Sbjct: 313 EEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLRNVR-SYNIFLKGLFEN 371
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+D MM D + D Y V +G G +++AL +L+++E + G V+
Sbjct: 372 GK---VDD--AMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDE 426
Query: 122 -AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV-ISSLLKLDDLESAEKIFEE 179
AY+ ++ K G+ D+ + EL K N+ NV I +K L+SA K+F E
Sbjct: 427 FAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFRE 486
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ N LI+ R +A + VN KG + + ++ L G +++
Sbjct: 487 MSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNM 546
Query: 240 IHKAVEAMKKVL 251
+ A+ + L
Sbjct: 547 MDAALRLWHQFL 558
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 131/298 (43%), Gaps = 8/298 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + G A V YN++L K ++L EM E G+ D T+ T + +
Sbjct: 385 KMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEG 444
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ + +M N+ D V Y + +G+ K ++KA + + + K + +
Sbjct: 445 NMGKALSLFGIM-TQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISR-KIFPNHIS 502
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y +++ Y G + R+W E+ +K +K VI + DL A++ +
Sbjct: 503 YAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMI 562
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S+ + D+ N LI+ + + ++KA L+N + KG + V ++ + G+ + ++
Sbjct: 563 SEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQ 622
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+A ++K++ P + ++ + + ++ A F + + +GF+P D
Sbjct: 623 EAELILRKMIER-----GIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDD 675
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 136/345 (39%), Gaps = 47/345 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT------R 54
M M GL T YN+++ K G + + + +EM G++ D TY T R
Sbjct: 243 MNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCR 302
Query: 55 LSAYADASD------HEGIDKILTMMEADPNVA----------------------LDWVI 86
+ + +A D H G+ L + V+ D VI
Sbjct: 303 NNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVI 362
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-EL 145
Y + NGY + G++ +AL + K EQ V AYN IL K D ++ E+
Sbjct: 363 YTILINGYCRNGMMSEALEIRDKMLEQGCALDV-VAYNTILNGLCKKKLLADANALFDEM 421
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
++ V + +I K ++ A +F + + D N LID +C+ +
Sbjct: 422 VERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEM 481
Query: 206 EKAENLVNHEKLKGREI---HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
EKA L N ++ R+I H+ S+ L GY + +A +++ KP
Sbjct: 482 EKANELWN--EMISRKIFPNHI-SYAILVNGYCNLGFVSEAFRLWDEMIRK-----GIKP 533
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDN 307
++ + + + GD+ A+ F+ + +G P + L N
Sbjct: 534 TLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLIN 578
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+ KM GL V YN +L + + G ++ + ++ +M E GI DR TY T ++ Y
Sbjct: 593 INKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYV 651
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 2/255 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ L V+YN + + K G + HEM+ NG+ D TY + +
Sbjct: 258 LDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCK 317
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A ++ M+ + V + Y T+ GYG G + A ++L++ + V
Sbjct: 318 ADRLNEAVELFEHMDQNKQVPCAYA-YNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVV 376
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S YN IL+ G+ G+ D+ L+ +E KK + Y +I L K LE+A + +
Sbjct: 377 S-YNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAM 435
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L + N ++D C+ L+ A ++ K ++ L G ++ ++
Sbjct: 436 KDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRV 495
Query: 241 HKAVEAMKKVLAAYQ 255
+A + +++L A Q
Sbjct: 496 DEAYKLYEQMLDANQ 510
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 4/209 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M++LG A ++ ++++++ + G + SL+ EM+ N + D Y + +
Sbjct: 223 FQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGK 282
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + K M+A+ + LD V Y ++ K L++A+ + + +Q K
Sbjct: 283 AGKVDMAWKFFHEMKAN-GLVLDDVTYTSMIGVLCKADRLNEAVELFEHM-DQNKQVPCA 340
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
AYN ++ YG GK +D + E ++ + + Y ++S L + ++ A K FEE
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE 400
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ A+ + N +ID+ C+ G LE A
Sbjct: 401 MKKDAI-PNLSTYNIMIDMLCKAGKLETA 428
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 117/254 (46%), Gaps = 11/254 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M D VVY S+++ ++K G E + +EM G + D L+ Y D
Sbjct: 503 EQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL----LNTYMDC 558
Query: 62 SDHEG-IDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
G I+K + + N+ D Y + +G K G +A + +EQ G
Sbjct: 559 VFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQ--GCV 616
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+++ AYN ++ + K GK + ++ E K K + Y +VI L K+D L+ A +
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FEE +S+ + + I + LID + + G +++A ++ KG +V +W L +
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 736
Query: 237 NSQIHKAVEAMKKV 250
+I +A+ + +
Sbjct: 737 AEEISEALVCFQSM 750
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 120/306 (39%), Gaps = 30/306 (9%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+D GL + N M+ K + S+ ++ D TYC+ +
Sbjct: 435 MKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR--- 491
Query: 64 HEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
H +D+ + E D N + V+Y ++ + K G K+ +I +
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR--------KEDGHKIYNEMLRL 543
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYK-----KAVKVLN-----NGYRNVISSLLKLDDLE 171
+ L L Y D V + E+ K + +K L Y +I L+K
Sbjct: 544 GCSPDLLLLNTY--MDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A ++F + Q DTR N +ID +C++G + KA L+ K KG E V ++ +
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
G + ++ +A ++ + L +V ++ +D F G I A +E L
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIEL-----NVVIYSSLIDGFGKVGRIDEAYLIMEELM 716
Query: 292 DKGFIP 297
KG P
Sbjct: 717 QKGLTP 722
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 131/299 (43%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+A Y+ ++ Y + G +E L+ EME +G+ Y + L+ + D
Sbjct: 322 LDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRD 381
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL-AMLKKSEEQIKGAKV 119
D + +L M+A V D Y + + +GK L A+ A K EE I+ V
Sbjct: 382 RGDWQKAFAVLREMQAS-GVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVV 440
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL-KLDDLESAEKIFE 178
+N ++ + K G+ D ++E +++ N++ +LL + + E E +
Sbjct: 441 T--WNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLS 498
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + Q L + L+DVY R+G ++A + + K G + ++ L Y Q
Sbjct: 499 EMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRG 558
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A+ +K + A + S+ L + ++ F ++ + A + ++ + + G P
Sbjct: 559 LADHALNVVKAMKAD-----GLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRP 612
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 76/173 (43%), Gaps = 3/173 (1%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK--KDDVL 140
D +++ + + + + L D AL +L S + I ++A +++ G G+ + + L
Sbjct: 227 DAPLFSDLISAFARAALPDAALELLA-SAQAIGLTPRSNAVTALISALGTAGRVAEAEAL 285
Query: 141 RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
+ +K Y ++ +++ L++AE++ +E + D + L+D Y
Sbjct: 286 FLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYT 345
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
R G E A L+ + G + + + G+R KA ++++ A+
Sbjct: 346 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQAS 398
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 118/256 (46%), Gaps = 11/256 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ MR G V YN+++ +++ G + + L+ M E G+ + T+ + ++
Sbjct: 213 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCK 272
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E K+ M + +A D V Y T+ GY K G +AL++ + ++ V
Sbjct: 273 AGKMEDARKVFDEMVRE-GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVV 331
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK---LDDLESAEKIF 177
+ ++I + + V + ++ ++ +++ + +I K LDD A +
Sbjct: 332 TFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 391
Query: 178 EEW--ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
++ + +CY N LI+ YC G +++A L++ + KG + V ++ + + Y
Sbjct: 392 KQCRIKPSVVCY-----NALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 446
Query: 236 QNSQIHKAVEAMKKVL 251
+N H A E +++L
Sbjct: 447 KNCDTHSAFELNQQML 462
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 140/320 (43%), Gaps = 12/320 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+A YN +++ G+ ++ S++ +M G + TY T ++A+ A + +G
Sbjct: 185 GVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGA 244
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG--AKVNSAYNV 125
++++ MM + + + V + ++ NG K G ++ A K +E ++ A +YN
Sbjct: 245 ERLVGMMR-EGGLKPNLVTFNSMVNGMCKAGKMEDA---RKVFDEMVREGLAPDGVSYNT 300
Query: 126 ILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ Y K G + L ++ E+ +K + + ++I + K +LE A + + +
Sbjct: 301 LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERG 360
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
L + LID +C+ G L+ A V K + V + L GY ++ +A
Sbjct: 361 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEAR 420
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKL 304
E + ++ A KP V + + + + D A + + +KG +P +
Sbjct: 421 ELLHEMEAK-----GLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSS 475
Query: 305 LDNVQNGKSNLETLRELYGN 324
L V G+ L L+ N
Sbjct: 476 LIRVLCGEKRLSDAHVLFKN 495
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ + + V YN+++ Y G ++ L+HEME G+ D TY T +SAY
Sbjct: 388 VRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCK 447
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATV 90
D H + M+E V D + Y+++
Sbjct: 448 NCDTHSAFELNQQMLEK--GVLPDAITYSSL 476
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 129/285 (45%), Gaps = 12/285 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+N+M+ Y K GN + + ++ + G+ D +TY + + + ++G+D +
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCR---NKGVDNAYEVFL 253
Query: 76 ADPN--VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
P + V Y + +G + G +++AL + E V + Y V++
Sbjct: 254 IMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRT-YTVLIYALSGS 312
Query: 134 GKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
G+K + L ++ E+ +K + + Y +I L K + ++ A K+ E + L
Sbjct: 313 GRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTY 372
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
N LID YC+ G+++ A +++ + + +++ L G + ++HKA+ + K+L
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE 432
Query: 253 AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K PS+ + + + D+ A + L+N+ G +P
Sbjct: 433 R-----KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVP 472
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 117/254 (46%), Gaps = 13/254 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + L+ + + YNS++ K + E L+ M ENG+ D++TY S + D
Sbjct: 427 LNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY----SVFID 482
Query: 61 ASDHEG-IDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
EG +++ T+ ++ V + VIY + +GY KVG +D A ++L E + A
Sbjct: 483 TLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLL---ERMLNDA 539
Query: 118 KVNSA--YNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ ++ YNV++ K K K+ + ++ VK Y +I +LK + A
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHAL 599
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+F S D + Y G+LE+ ++++ +G + ++ L GY
Sbjct: 600 KVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY 659
Query: 235 RQNSQIHKAVEAMK 248
+ H+A + +K
Sbjct: 660 ARLGLTHRAFDFLK 673
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 105/232 (45%), Gaps = 3/232 (1%)
Query: 22 LYYKTGNFEKLDSL--MHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPN 79
+Y +G+ K+++L +EM+E G + +TY + + + K+L+ M ++
Sbjct: 306 IYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEM-SEKG 364
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139
+ V Y + +GY K G++D A +L E G + +I L K +
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424
Query: 140 LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199
+ ++ ++ + Y ++I K++DLESA ++ L D + ID
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484
Query: 200 CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
C+ G +E+A L + K KG + + + L GY + +I A ++++L
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERML 536
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 131/300 (43%), Gaps = 12/300 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + GL + V YN+++ Y K G + ++ ME N + TY +
Sbjct: 357 LSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCK 416
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
H+ + + M+E + +L + Y ++ +G KV L+ A +L E G
Sbjct: 417 KRKVHKAMALLNKMLERKLSPSL--ITYNSLIHGQCKVNDLESAYRLLSLMNEN--GLVP 472
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ Y+V + K G+ ++ +++ K K VK Y +I K+ ++ A +
Sbjct: 473 DQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLL 532
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + A ++ N LI+ C+ +++A +LV G + V ++ L ++
Sbjct: 533 ERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKD 592
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A++ +++ + ++P V + A L + +G + ++ I +N++G +P
Sbjct: 593 GAFDHALKVFNHMVS-----LGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILP 647
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 119/306 (38%), Gaps = 31/306 (10%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS- 62
M LG Y + L Y+ G E++D ++ +M E GI D TY + YA
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
H D + M++ +L V +L K L+ + +E ++S
Sbjct: 665 THRAFDFLKCMVDTGCKPSLYI------------VSILIKNLSHENRMKETRSEIGIDSV 712
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
N + + + L+++E + + + + Y +I+ + + LE A+ + +
Sbjct: 713 SNTL--------EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMK 764
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + I N L+D C+ G+ +A LV+ G ++S+ L G
Sbjct: 765 ERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNE 824
Query: 242 KAVEAMKKVLAAYQTL--VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KA +L+ V WK ++ L +D D I+++ +KG P
Sbjct: 825 KAKAVFHGLLSCGYNYDEVAWKVLIDGLLK-----RDLVD--ECSELIDIMEEKGCQPNP 877
Query: 300 LQDKLL 305
L LL
Sbjct: 878 LTYSLL 883
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 140/310 (45%), Gaps = 26/310 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M++ GL +N++LK Y + G+ ++ +S++ EME++G++ D +TY + AYA+
Sbjct: 339 FEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYAN 398
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E +L MEA NV + I++ + Y G K +L+ ++K + V
Sbjct: 399 VGRWESARHLLKQMEAR-NVQPNTFIFSRILASYRDRGEWQKTFEVLR----EMKNSNVK 453
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL------- 170
YNV++ +GK+ D + ++ ++L+ G + + L D
Sbjct: 454 PDRHFYNVMIDTFGKFNCLDHAMETYD------RMLSEGIEPDVVTWNTLIDCHRKHGYH 507
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
+ A ++FEE + + N +I+ ++ + L+ + +G +V ++ L
Sbjct: 508 DRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTL 567
Query: 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
Y + + + A++ ++ + +A KPS A ++ F G A N ++
Sbjct: 568 VDIYGHSGRFNDAIDCLEAMKSA-----GLKPSATMYNALINAFAQRGLSEQAVNAYRVM 622
Query: 291 NDKGFIPTDL 300
G P+ L
Sbjct: 623 ISDGLRPSLL 632
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 125/299 (41%), Gaps = 22/299 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL T + +++ G E+ +++ EM+E G+ + L YA +
Sbjct: 311 GLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEA 370
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ I++ ME ++ D Y + + Y VG + A +LK+ E + + N+ ++ I
Sbjct: 371 ESIISEMEKS-GLSPDEHTYGLLVDAYANVGRWESARHLLKQMEA--RNVQPNTFIFSRI 427
Query: 127 LTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L Y G++ K +VLR E+ VK + Y +I + K + L+ A + ++ S+
Sbjct: 428 LASYRDRGEWQKTFEVLR--EMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSE 485
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ D N LID + ++G ++A L + +G YL N I+
Sbjct: 486 GIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERG---------YLPCPTTYNIMINSL 536
Query: 244 VEAMK----KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
E K K+L P+V + +D + G A + +E + G P+
Sbjct: 537 GEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPS 595
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 53/273 (19%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS--DHEGIDK 69
T + YN+++ + + EK +LM M ++G D Y + + + D + K
Sbjct: 208 TPLTYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQK 267
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129
+ +E+D + LD ++ + G+ K G ++AL L + K S + +++
Sbjct: 268 LYEEIESD-KIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKT-STFVAVISA 325
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
G +G+ E AE IFEE + L
Sbjct: 326 LGNHGRT----------------------------------EEAEAIFEEMKEGGLKPRI 351
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY----RQNSQIH--KA 243
+ N L+ Y R G L++AE++++ + G ++ L Y R S H K
Sbjct: 352 KAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQ 411
Query: 244 VEA---------MKKVLAAYQTLVKWKPSVESL 267
+EA ++LA+Y+ +W+ + E L
Sbjct: 412 MEARNVQPNTFIFSRILASYRDRGEWQKTFEVL 444
>gi|357142830|ref|XP_003572708.1| PREDICTED: uncharacterized protein LOC100834819 [Brachypodium
distachyon]
Length = 780
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 147/311 (47%), Gaps = 35/311 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KMR+ G+A + +++ +Y K GN E+ +++ G+ D + + ++AY +A
Sbjct: 467 KMREKGIAPDIITSITLVHMYSKAGNLEQAKESFAFIQKEGLQPDMKLFTSMINAYINAG 526
Query: 63 DHEGIDKILTMMEADPNVALDWV--IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + + ++ ME N+++ IY V Y GL+D A M ++ G +
Sbjct: 527 EPKQAEDLVKQME---NLSIKPTREIYMDVMRAYADRGLVDGADRM--RNTMTFAGVEPT 581
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR-------NVISSLLKLDDLES 172
+ +++ YG+ G D ++E+ + +NG++ +IS ++ + L+
Sbjct: 582 LECFTLLVEAYGRIGDPDHAYALFEVMR------SNGHKPDDRCLAGMISGHMRKNQLDQ 635
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR---EIHVKSWYY 229
A K+ E + L + L+D L+++AE LV + G EIHV Y
Sbjct: 636 ALKLLLSLEKEGLKPGVKTNLVLLDWLSTLHLVQEAEQLVQKIRKAGEEPIEIHV----Y 691
Query: 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD-YFKDEGDIGGAENFIE 288
LA Y ++ Q KA +++ K+L + L+K + ++ L+ F +E A + +
Sbjct: 692 LADMYAKSRQEEKARKSL-KILEEKKRLLKAEHFERVISGLLEGGFSEE-----ANKYFK 745
Query: 289 LLNDKGFIPTD 299
++ +GF+P++
Sbjct: 746 MMKSRGFVPSE 756
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 8/212 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+MR G M K Y + G + EMEE G+ + Y + Y
Sbjct: 152 FQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCR 211
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
E K+L ++ PNV V Y + GY K G +++A ++K+ +E K
Sbjct: 212 IGQTEVARKLLHSLQVKGLSPNV----VTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIV 267
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
AY ++ Y + G+ +D R+ E+ V+V Y +I+ KL + EK+
Sbjct: 268 IDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKL 327
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ E + + D N L+D YCR G + KA
Sbjct: 328 LQANEYRGVNLDEYSYNTLVDGYCRKGFMTKA 359
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 23/220 (10%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G+ VYN+M+ Y K G +++ L+ E G+ D Y+Y T + Y
Sbjct: 295 EMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKG 354
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA----MLKKSEEQIKGAK 118
+ MM + + Y T+ NG+ G +D AL MLK+ G
Sbjct: 355 FMTKAFETCDMMVRNGFTGTT-LTYNTLLNGFCSRGAIDDALKLWFLMLKR------GVV 407
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWE------LYKKAVKVLNNGYRNVISSLLKLDDLE 171
N + + +L + K GK + L +W+ L + V + VI+ L K +
Sbjct: 408 PNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTI-----NTVINGLCKNRRMT 462
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
AE++F + + D+ LID YC+ G L +A +
Sbjct: 463 EAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQI 502
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/169 (17%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
++++++L + G+ D L ++ E+ K + +++ L++ D+ +A +F++
Sbjct: 95 ASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQ 154
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
D + YCR+G + A + + + G ++++ +++ + GY + Q
Sbjct: 155 MRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQ 214
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
E +K+L + Q + P+V + + + EG + AE ++
Sbjct: 215 ----TEVARKLLHSLQ-VKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVK 258
>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
Length = 668
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 131/299 (43%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+A Y+ ++ Y + G +E L+ EME +G+ Y + L+ + D
Sbjct: 322 LDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRD 381
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL-AMLKKSEEQIKGAKV 119
D + +L M+A V D Y + + +GK L A+ A K EE I+ V
Sbjct: 382 RGDWQKAFAVLREMQAS-GVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVV 440
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL-KLDDLESAEKIFE 178
+N ++ + K G+ D ++E +++ N++ +LL + + E E +
Sbjct: 441 T--WNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLS 498
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + Q L + L+DVY R+G ++A + + K G + ++ L Y Q
Sbjct: 499 EMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRG 558
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A+ +K + A + S+ L + ++ F ++ + A + ++ + + G P
Sbjct: 559 LADHALNVVKAMKAD-----GLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRP 612
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 76/173 (43%), Gaps = 3/173 (1%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK--KDDVL 140
D +++ + + + + L D AL +L S + I ++A +++ G G+ + + L
Sbjct: 227 DAPLFSDLISAFARAALPDAALELLA-SAQAIGLTPRSNAVTALISALGTAGRVAEAEAL 285
Query: 141 RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
+ +K Y ++ +++ L++AE++ +E + D + L+D Y
Sbjct: 286 FLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYT 345
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
R G E A L+ + G + + + G+R KA ++++ A+
Sbjct: 346 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQAS 398
>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
Length = 735
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 123/304 (40%), Gaps = 41/304 (13%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++MR +G+ V YN ++K ++ M +NG D+ +Y T +S
Sbjct: 220 ERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKE 279
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ +L M +D + D V Y + +G K G D+AL+ L++SE
Sbjct: 280 KRVADVQNLLERM-SDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESE---------- 328
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
GK + D+V GY + S + A++I E
Sbjct: 329 ---------GKRFRVDEV----------------GYSATVHSFCLNGRMAEAKEIIGEMI 363
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S+ D + ++D +CR G L++A ++ H G + + + L G + +
Sbjct: 364 SKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSS 423
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
+A E + K + W PS + + + F+ EG + + + + + KGF PT ++
Sbjct: 424 EAWELLNKSEEEW-----WTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVE 478
Query: 302 DKLL 305
LL
Sbjct: 479 INLL 482
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 136/339 (40%), Gaps = 30/339 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G+ V YN ++ K G+ ++ S + E E D Y + ++
Sbjct: 289 LERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCL 348
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+I+ M + D V Y+ V +G+ ++G LD+A M+K + G K N
Sbjct: 349 NGRMAEAKEIIGEMISK-GCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKN--GCKPN 405
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKKA-----------VKVLNNGYRNVISSLLKLD 168
+ + +L K GK + WEL K+ V+ +G+R LK
Sbjct: 406 TVTHTALLNGLCKVGKSSEA---WELLNKSEEEWWTPSAITYSVVMHGFRR--EGKLK-- 458
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
ES + + + + I N LI C A++ + + KG I+V ++
Sbjct: 459 --ESCDVVMQMLQKGFFPTTVEI-NLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFT 515
Query: 229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
+ G+ + + A+ + + L P V + +D +G + A + +E
Sbjct: 516 TVIHGFSRQGDLESALSLLDDMY-----LTNRHPDVVTYTVVVDALGRKGKMKEATSLVE 570
Query: 289 LLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLA 327
+ ++G PT + + + + K +E L L LA
Sbjct: 571 KMLNRGLHPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLA 609
>gi|225430810|ref|XP_002271426.1| PREDICTED: pentatricopeptide repeat-containing protein At4g36680,
mitochondrial-like [Vitis vinifera]
Length = 414
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
+++++ Y G F+ ++MEE G ++ LSA + + + K +
Sbjct: 110 STLIRSYGIAGMFQHALRTFNQMEELGTPRSSISFNALLSACNQSKLFDQVPKFFEEIPR 169
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGK 135
V D + Y + Y + GL DKA++MLK+ EE KG ++ + + IL K G+
Sbjct: 170 RYGVLPDKISYGILVKSYCESGLSDKAISMLKEMEE--KGVEITAVTFTTILDALYKQGQ 227
Query: 136 KDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
D ++W E+ KK L+ G NV D E+ + + +E + L DT N+
Sbjct: 228 SDRAEKVWHEMAKKG--CLDVGAYNVKIMFAHGGDPENVKALIDEMSNAGLKPDTISYNY 285
Query: 195 LIDVYCRNGLLEKAENL 211
L+ YC++G++++A+ +
Sbjct: 286 LMTSYCKSGMVDEAKKV 302
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 20/209 (9%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G+ + Y ++K Y ++G +K S++ EMEE G+ T+ T L A
Sbjct: 169 RRYGVLPDKISYGILVKSYCESGLSDKAISMLKEMEEKGVEITAVTFTTILDALYKQGQS 228
Query: 65 EGIDKILTMMEADPNVALDW----VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +K+ M + + +++A G+ L+D E G K +
Sbjct: 229 DRAEKVWHEMAKKGCLDVGAYNVKIMFAHGGDPENVKALID---------EMSNAGLKPD 279
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ +YN ++T Y K G D+ +++ EL + +R +I L + D E+ K+F+
Sbjct: 280 TISYNYLMTSYCKSGMVDEAKKVYAELEETGCHPNAATFRTLIYYLCRSGDFETGYKVFK 339
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEK 207
+ + +IP+F + GL++K
Sbjct: 340 QS-----AFRRKIPDFGTLRHLVEGLVQK 363
>gi|21592522|gb|AAM64472.1| unknown [Arabidopsis thaliana]
Length = 409
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 6/191 (3%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YN M+ LY G EK+ ++ +++ ++ D +TY LS+ A + + + KIL
Sbjct: 193 ITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEE 252
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M D + WV Y + + Y + A + L E+ + Y+ ++ L+
Sbjct: 253 MRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGL 312
Query: 134 GKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEW-ESQALCYDT-- 189
G K + +IW+ + ++L++ Y V+SS L L L AE+I +W ES+ +D
Sbjct: 313 GNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDASA 372
Query: 190 --RIPNFLIDV 198
RI N DV
Sbjct: 373 CLRILNAFRDV 383
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 141/336 (41%), Gaps = 51/336 (15%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G + V N ++ Y K G E++ S + EM G DR+T+ + ++
Sbjct: 270 EQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRI 329
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ +IL +M DP D Y ++ G K+G +++A+ +L ++ ++
Sbjct: 330 GHVKHALEILDVMLQEGFDP----DIFTYNSLIFGLCKLGEVEEAVEIL--NQMILRDFS 383
Query: 119 VNSA-YNVILTLYGKYGKKDDVLRIWELYK---------------KAVKVLNN------- 155
N+ YN +++ K + ++ + + + + + NN
Sbjct: 384 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMEL 443
Query: 156 --------------GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
Y +I SL LE A + +E ES + N LID +C+
Sbjct: 444 FEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCK 503
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
N +E+AE + + +L+G +V ++ L G +N ++ +A + M ++L + K
Sbjct: 504 NKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQML-----MEGLK 558
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P + + L YF GDI A + ++ + G P
Sbjct: 559 PDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEP 594
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 134/330 (40%), Gaps = 44/330 (13%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+RD + TV YN+++ K E+ L + GI D T+ + + ++
Sbjct: 379 LRDF--SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNN 436
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA- 122
H ++ M+ D Y + + G L++AL++LK+ E G N
Sbjct: 437 HRLAMELFEEMKTK-GCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESS--GCSRNVVT 493
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN ++ + K + ++ I+ E+ + + Y +I L K +E A ++ ++
Sbjct: 494 YNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQML 553
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ L D N L+ +CR G ++KA ++V G E ++ L G + ++
Sbjct: 554 MEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVE 613
Query: 242 KAVEAMKKV-----LAAYQTLVKWKPSVESL------AACLDYFKDE------------- 277
A ++ V + A QT + P +++L + + F++
Sbjct: 614 LASRLLRTVQLKGMVLAPQT---YNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYK 670
Query: 278 ----------GDIGGAENFIELLNDKGFIP 297
G IG A +F+ + DKGF+P
Sbjct: 671 VVFRGLCSGGGPIGEAVDFLVEMTDKGFLP 700
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/245 (17%), Positives = 104/245 (42%), Gaps = 10/245 (4%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
++V+Y +L+ K G+F + ++ EM+ G R T+ + +YA + ++
Sbjct: 104 SSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVV 163
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDK---ALAMLKKSEEQIKGAKVN-SAYNVIL 127
+ME + + LD Y + N L+D L + S +G K + + +N+++
Sbjct: 164 DIMEEEFGLKLDAFTYNFLLN-----VLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILI 218
Query: 128 -TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
L + + +L + E+ + + ++ ++ ++ A +I E+ +
Sbjct: 219 KALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCP 278
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
N L+ YC+ G +E+ + ++ +G ++ L G + + A+E
Sbjct: 279 SSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEI 338
Query: 247 MKKVL 251
+ +L
Sbjct: 339 LDVML 343
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 30/254 (11%)
Query: 57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
A SD + I +L PN VIY V GK D + +++ +++K
Sbjct: 78 ALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGK----DGSFGSMRRVLQEMKH 133
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN------------NGYRNVISSL 164
L L Y K +EL+ +AV V++ Y +++ L
Sbjct: 134 TGCEIRRGTFLILIESYAK-------FELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVL 186
Query: 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV 224
+ + L+ E + S+ + D N LI CR + A ++ G
Sbjct: 187 VDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDE 246
Query: 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY-FKDEGDIGGA 283
K++ L G+ + ++ A+ ++++AA PS L + + EG I
Sbjct: 247 KTFTTLMQGFIEEGNMNGALRIREQMVAA------GCPSSNVTVNVLVHGYCKEGRIEEV 300
Query: 284 ENFIELLNDKGFIP 297
+FI+ ++++GF P
Sbjct: 301 LSFIDEMSNEGFRP 314
>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 21/259 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR Y +++ + + G EK + + +++E+G+ D Y Y + +Y+ A
Sbjct: 311 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 370
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
G +I ++M+ +P D Y + + YG+ GL A A+ E++K +
Sbjct: 371 YPYGAAEIFSLMQHMGCEP----DRASYNIMVDAYGRAGLHSDAEAVF----EEMKRLGI 422
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN---VISSLL----KLDDLES 172
+ L Y K DV + + K+ + NG V++S+L +L
Sbjct: 423 APTMKSHMLLLSAYSKARDVTKCEAIVKE---MSENGVEPDTFVLNSMLNLYGRLGQFTK 479
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
EKI E E+ D N LI++Y + G LE+ E L K K V +W
Sbjct: 480 MEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIG 539
Query: 233 GYRQNSQIHKAVEAMKKVL 251
Y + K +E ++++
Sbjct: 540 AYSRKKLYVKCLEVFEEMI 558
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ LG+A T + +L Y K + K ++++ EM ENG+ D + + L+ Y
Sbjct: 414 FEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGR 473
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDK 102
++KIL ME P A D Y + N YGK G L++
Sbjct: 474 LGQFTKMEKILAEMENGPCTA-DISTYNILINIYGKAGFLER 514
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ T V NSML LY + G F K++ ++ EME T D TY ++ Y
Sbjct: 449 VKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGK 508
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
A E I+++ ++ + N D V + + Y + L K L + ++
Sbjct: 509 AGFLERIEELFVELK-EKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEE 556
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 125/306 (40%), Gaps = 26/306 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+R + +N ++ Y + +++ +SL ++ E+ TY + AY A
Sbjct: 168 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 227
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGY-----GKVGLLDKALAMLKKSEEQIK 115
E + +L M+ P I TV N Y + G ++A+ + ++ + +
Sbjct: 228 IERAEVVLVEMQNHHVSPK-----TIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRD-R 281
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
YN+++ LYGK K +++ E+ K Y ++++ + E AE
Sbjct: 282 CKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAE 341
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+IFE+ + L D + N L++ Y R G A + + + G E S+ + Y
Sbjct: 342 EIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 401
Query: 235 RQ---NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ +S E MK++ A P+++S L + D+ E ++ ++
Sbjct: 402 GRAGLHSDAEAVFEEMKRLGIA--------PTMKSHMLLLSAYSKARDVTKCEAIVKEMS 453
Query: 292 DKGFIP 297
+ G P
Sbjct: 454 ENGVEP 459
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 131/320 (40%), Gaps = 66/320 (20%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G++ + YNS+L Y + + ++ ++ ME GI TY + + + A D +
Sbjct: 207 GVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKV 266
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ + M+A+ NV D +Y V N Y + G + +A +L ++ G V
Sbjct: 267 EALFNEMKAN-NVVGDVYLYTAVINAYCRAGNMRRAAKVL----DECVGNGV-------- 313
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
E ++ VL NG+ K+ +E+AE + + + Q +
Sbjct: 314 ----------------EPNERTYGVLINGF-------CKIGQMEAAEMLLADMQGQGVGL 350
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
+ I N +ID YCR G+++ A + + G E+ + ++ LA G + +++ +A +
Sbjct: 351 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLL 410
Query: 248 KKVL--------AAYQTLVKW----------------------KPSVESLAACLDYFKDE 277
++ Y TL+ PSV + +D + +
Sbjct: 411 HIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKK 470
Query: 278 GDIGGAENFIELLNDKGFIP 297
G I AE F + + KGF+P
Sbjct: 471 GSIREAERFRKEMEKKGFVP 490
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 126/290 (43%), Gaps = 16/290 (5%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+Y +++ Y + GN + ++ E NG+ + TY ++ + E + +L M
Sbjct: 284 LYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADM 343
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKY 133
+ V L+ +I+ T+ +GY + G++D AL +K + E++ G +++ YN + +
Sbjct: 344 QGQ-GVGLNQIIFNTMIDGYCRKGMVDDALK-IKAAMEKM-GVELDIYTYNTLACGLCRV 400
Query: 134 GKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ D+ + + + V N Y +IS K D+ A ++F E +
Sbjct: 401 NRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTY 460
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV---EAMKK 249
N +ID Y + G + +AE + KG V ++ L G+ N ++ A+ E MK+
Sbjct: 461 NVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQ 520
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+P+V + A + EG A + + G IP D
Sbjct: 521 --------RGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDD 562
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 114/250 (45%), Gaps = 15/250 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + G+ T Y ++ + K+++L +EM+ N + D Y Y ++AY
Sbjct: 235 LEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCR 294
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + K+L + V + Y + NG+ K+G ++ A +L ++ Q +G +N
Sbjct: 295 AGNMRRAAKVLDECVGN-GVEPNERTYGVLINGFCKIGQMEAAEMLL--ADMQGQGVGLN 351
Query: 121 S-AYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+N ++ Y + G DD L+I + K V++ Y + L +++ L+ A+ +
Sbjct: 352 QIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLH 411
Query: 179 EWESQALCYDTRIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ +PN+ LI ++C++G + +A L KG V ++ + G
Sbjct: 412 IMIEMGV-----VPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDG 466
Query: 234 YRQNSQIHKA 243
Y + I +A
Sbjct: 467 YTKKGSIREA 476
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M ++G+ V Y +++ ++ K G+ + L EM E G T TY + Y
Sbjct: 413 MIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGS 472
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
++ ME V D YA++ +G+ G +D AL + ++ ++ +G + N A
Sbjct: 473 IREAERFRKEMEKKGFVP-DVYTYASLVHGHCVNGKVDVALKLFEEMKQ--RGTEPNVVA 529
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSL 164
Y +++ K G+ + ++++ KA + ++ Y ++ SL
Sbjct: 530 YTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 572
>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 860
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 125/275 (45%), Gaps = 15/275 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+RD G TV YN ++ Y + + ++ ++M+E G DR TYCT + +A A
Sbjct: 391 VRD-GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGF 449
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ + M+A ++ D Y+ + N GK G L A + + +Q G N
Sbjct: 450 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ--GCTPNLVT 506
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+++ L+ K L+++ ++ + Y V+ L LE AE +F E +
Sbjct: 507 YNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ 566
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D + L+D++ + G +EKA G +V + L + + + ++I
Sbjct: 567 QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIA 626
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVES----LAACLD 272
+A E ++ +LA + +PS+++ L+ C D
Sbjct: 627 EAYELLQNMLA-----LGLRPSLQTYTLLLSCCTD 656
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 13/205 (6%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ +++LGL N +LK GN L + G +D +TY T + A
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGN--ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
I+K+L M D PN V Y + + YG+ L++A+ + + +E G K
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNT----VTYNRLIHSYGRANYLNEAMNVFNQMQE--AGCK 431
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ Y ++ ++ K G D + +++ + + Y +I+ L K L +A K+
Sbjct: 432 PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKL 491
Query: 177 FEEWESQALCYDTRIPNFLIDVYCR 201
F E Q + N ++D++ +
Sbjct: 492 FCEMVDQGCTPNLVTYNIMMDLHAK 516
>gi|18415979|ref|NP_568214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75165070|sp|Q94B59.1|PP372_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g09450, mitochondrial; Flags: Precursor
gi|14596093|gb|AAK68774.1| putative protein [Arabidopsis thaliana]
gi|27311913|gb|AAO00922.1| putative protein [Arabidopsis thaliana]
gi|332004012|gb|AED91395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 409
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 6/191 (3%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YN M+ LY G EK+ ++ +++ ++ D +TY LS+ A + + + KIL
Sbjct: 193 ITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEE 252
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M D + WV Y + + Y + A + L E+ + Y+ ++ L+
Sbjct: 253 MRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGL 312
Query: 134 GKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEW-ESQALCYDT-- 189
G K + +IW+ + ++L++ Y V+SS L L L AE+I +W ES+ +D
Sbjct: 313 GNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDASA 372
Query: 190 --RIPNFLIDV 198
RI N DV
Sbjct: 373 CLRILNAFRDV 383
>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g03560, mitochondrial; Flags: Precursor
gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 10/295 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+++ T N+++K + K G E+L + +M+ENGI YTY ++ A
Sbjct: 176 SEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSA 235
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ +++ +ME+ + D V Y T+ GY K G KA+ L+ E + A +
Sbjct: 236 MFVDSAERVFEVMESG-RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKIT 294
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+I Y V E+ +K ++V + + VI L K L +FE
Sbjct: 295 YMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMI 354
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + I LID Y ++G +E A L++ +G + V ++ + G +N ++
Sbjct: 355 RKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVE 414
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESL--AACLDYFKDEGDIGGAENFIELLNDKG 294
+A++ + T ++ S+ ++ +D G + AE E +++KG
Sbjct: 415 EALD-------YFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG 462
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 18/257 (7%)
Query: 1 MQKMRDL---GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
M+K+RD+ G + Y +M++ Y +F +L EM+E GI + + +
Sbjct: 277 MEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGG 336
Query: 58 YA-DASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQ 113
+ +EG M+ + PNVA IY + +GY K G ++ A+ +L + +E
Sbjct: 337 LCKEGKLNEGYTVFENMIRKGSKPNVA----IYTVLIDGYAKSGSVEDAIRLLHRMIDEG 392
Query: 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLES 172
K V Y+V++ K G+ ++ L + + +N+ Y ++I L K ++
Sbjct: 393 FKPDVVT--YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDE 450
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLA 231
AE++FEE + D+ N LID + ++ +++A L E+ +G + V ++ L
Sbjct: 451 AERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILL 510
Query: 232 TGYRQNSQIHKAVEAMK 248
+G + H+ EA+K
Sbjct: 511 SGMFKE---HRNEEALK 524
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 110/270 (40%), Gaps = 42/270 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GLA ++ Y+S++ K G ++ + L EM E G T D Y Y + A+ + H +
Sbjct: 427 GLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF---TKHRKV 483
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
D+A+A+ K+ EE+ + Y ++L
Sbjct: 484 ---------------------------------DEAIALFKRMEEEEGCDQTVYTYTILL 510
Query: 128 TLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+ K + ++ L++W++ K + +R + + L + A KI +E +
Sbjct: 511 SGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVI 570
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D + +I+ C+ G +++A L + +GRE+ + + R+ + A++
Sbjct: 571 LDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKL 629
Query: 247 M-KKVLAAYQTLVKWKPSVES---LAACLD 272
M K+ Y+ + K V+ L C D
Sbjct: 630 MHSKIGIGYERMGSVKRRVKFTTLLETCFD 659
>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
Length = 642
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 10/295 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+++ T N+++K + K G E+L + +M+ENGI YTY ++ A
Sbjct: 158 SEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSA 217
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ +++ +ME+ + D V Y T+ GY K G KA+ L+ E + A +
Sbjct: 218 MFVDSAERVFEVMESG-RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKIT 276
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+I Y V E+ +K ++V + + VI L K L +FE
Sbjct: 277 YMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMI 336
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + I LID Y ++G +E A L++ +G + V ++ + G +N ++
Sbjct: 337 RKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVE 396
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESL--AACLDYFKDEGDIGGAENFIELLNDKG 294
+A++ + T ++ S+ ++ +D G + AE E +++KG
Sbjct: 397 EALD-------YFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG 444
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 18/257 (7%)
Query: 1 MQKMRDL---GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
M+K+RD+ G + Y +M++ Y +F +L EM+E GI + + +
Sbjct: 259 MEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGG 318
Query: 58 YA-DASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQ 113
+ +EG M+ + PNVA IY + +GY K G ++ A+ +L + +E
Sbjct: 319 LCKEGKLNEGYTVFENMIRKGSKPNVA----IYTVLIDGYAKSGSVEDAIRLLHRMIDEG 374
Query: 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLES 172
K V Y+V++ K G+ ++ L + + +N+ Y ++I L K ++
Sbjct: 375 FKPDVVT--YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDE 432
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLA 231
AE++FEE + D+ N LID + ++ +++A L E+ +G + V ++ L
Sbjct: 433 AERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILL 492
Query: 232 TGYRQNSQIHKAVEAMK 248
+G + H+ EA+K
Sbjct: 493 SGMFKE---HRNEEALK 506
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 110/270 (40%), Gaps = 42/270 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GLA ++ Y+S++ K G ++ + L EM E G T D Y Y + A+ + H +
Sbjct: 409 GLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF---TKHRKV 465
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
D+A+A+ K+ EE+ + Y ++L
Sbjct: 466 ---------------------------------DEAIALFKRMEEEEGCDQTVYTYTILL 492
Query: 128 TLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+ K + ++ L++W++ K + +R + + L + A KI +E +
Sbjct: 493 SGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVI 552
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D + +I+ C+ G +++A L + +GRE+ + + R+ + A++
Sbjct: 553 LDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKL 611
Query: 247 M-KKVLAAYQTLVKWKPSVES---LAACLD 272
M K+ Y+ + K V+ L C D
Sbjct: 612 MHSKIGIGYERMGSVKRRVKFTTLLETCFD 641
>gi|9955532|emb|CAC05471.1| putative protein [Arabidopsis thaliana]
Length = 402
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 6/191 (3%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YN M+ LY G EK+ ++ +++ ++ D +TY LS+ A + + + KIL
Sbjct: 186 ITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEE 245
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M D + WV Y + + Y + A + L E+ + Y+ ++ L+
Sbjct: 246 MRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGL 305
Query: 134 GKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEW-ESQALCYDT-- 189
G K + +IW+ + ++L++ Y V+SS L L L AE+I +W ES+ +D
Sbjct: 306 GNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDASA 365
Query: 190 --RIPNFLIDV 198
RI N DV
Sbjct: 366 CLRILNAFRDV 376
>gi|186478941|ref|NP_174121.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332192779|gb|AEE30900.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 388
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDR-YTYCTRLSAYAD 60
Q MR + Y SM+ LY G +D ++ +M+ENG+ +D+ T L AYA
Sbjct: 159 QTMRVQNMLLKPYPYYSMIYLYALLGEKNMIDEILRQMKENGVEHDKNLTANNVLKAYAS 218
Query: 61 ASDHEGIDKILTMMEAD-PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D E ++ L +E + P +L W ++ Y K G KA+ ML+++E +
Sbjct: 219 LPDVEAMEMFLMGLEVEEPRFSLAWQTGISIAKAYLKGGSSRKAVEMLRRTELVVDTKSK 278
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWEL-YKKAVK 151
+SA V++ +Y G K D R+ L Y K+ K
Sbjct: 279 DSANKVLMMMYWDAGAKQDASRLSRLIYPKSKK 311
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 8/285 (2%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V YN+++ ++K G+ K L +EM + GI+ D TY ++A A + + IL
Sbjct: 217 VAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQ 276
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M D V D Y ++ GY G +A+ + KK Q V + N ++ K+
Sbjct: 277 M-VDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVT-LNSLMASLCKH 334
Query: 134 GKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
GK D +++ + K K Y+ +++ L ++F S + D+ I
Sbjct: 335 GKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIF 394
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
N LI Y + G+L++A + N + +G E V ++ + + ++ AVE +++
Sbjct: 395 NVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMID 454
Query: 253 AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
PS+ + + F GD+ A++ + + +KG P
Sbjct: 455 Q-----GVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRP 494
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 10/299 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM G+ V NS++ K G + + M G D ++Y L+ YA
Sbjct: 310 KKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATK 369
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ ++ +M +D +A D I+ + Y K G+LD+A + + EQ V +
Sbjct: 370 GCLVDLTELFNLMLSD-GIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVT 428
Query: 122 AYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y+ ++ + GK DD + + ++ + V + Y +I DL A+ + +
Sbjct: 429 -YSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQM 487
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ + D NF+I+ C+ G + A+N+ + G +V + L GY ++
Sbjct: 488 MNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKM 547
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIG-GAENFIELLNDKGFIPT 298
A+ +++A +P+V ++ + G I G F E+L+ KG P+
Sbjct: 548 ENALRVFDVMVSA-----GIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILH-KGIKPS 600
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 107/232 (46%), Gaps = 8/232 (3%)
Query: 8 GLARTTVVYNSMLK-LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
GL T++ +++L+ L E LD L+H M G D ++YC L +
Sbjct: 138 GLGIDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQ 197
Query: 67 IDKILTMMEADPNVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
D++L MM V L + V Y TV +G+ K G ++KA + + ++ + S YN
Sbjct: 198 ADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDL-STYNC 256
Query: 126 ILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
++ K K + +LR ++ K V N Y ++I + A ++ ++ S
Sbjct: 257 VVNALCKARAMDKAEAILR--QMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTS 314
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
Q + D N L+ C++G ++ A ++ + +KG++ + S+ + GY
Sbjct: 315 QGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGY 366
>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
Length = 526
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 5/205 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V YNS++ K G + + M + G+ D TY T L YA
Sbjct: 174 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYAT 233
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K +++A+ + K +Q G N
Sbjct: 234 KGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ--GLNPN 290
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D + +E + + ++ + Y ++I SL D E AE++F
Sbjct: 291 AVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFL 350
Query: 179 EWESQALCYDTRIPNFLIDVYCRNG 203
E + +C T N +ID +C+ G
Sbjct: 351 EMLDRGICLSTIFFNSIIDSHCKEG 375
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 11/199 (5%)
Query: 38 EMEENGITYDRYTYCTRLSAYADAS-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96
E+ GI D ++Y L+ D + E ++ + M + + D V Y+TV NG+ K
Sbjct: 42 ELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFK 100
Query: 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNN 155
G LDK L +++I V YN I+ K D + + + K V
Sbjct: 101 EGDLDKML------DQRISPNVV--TYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 152
Query: 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215
Y +++ + A ++ S + D N L+D C+NG +A + +
Sbjct: 153 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 212
Query: 216 KLKGREIHVKSWYYLATGY 234
+G + + ++ L GY
Sbjct: 213 TKRGLKPDITTYGTLLQGY 231
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 133/302 (44%), Gaps = 14/302 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM++ G+ YN ++ K G + + EM E G++ + TY T +
Sbjct: 257 EKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCRE 316
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+K++ M++ +PN+ + Y T+ +G+ VG L KAL++ + + +
Sbjct: 317 MKANEANKVMDQMKSYVINPNL----ITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPS 372
Query: 119 VNSAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ YNV+++ + + G + + E+ ++ +K Y +I + + D++E+A ++
Sbjct: 373 L-VTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLR 431
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E L D + LI +C G + +A L K E + + + GY +
Sbjct: 432 SSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKE 491
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++A+ + + + P+V S + + E + AE+ +E + D G P
Sbjct: 492 GSSYRALRLFRDMEEK-----ELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDP 546
Query: 298 TD 299
+D
Sbjct: 547 SD 548
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 116/284 (40%), Gaps = 10/284 (3%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+ ++K + G EK L+ E+ E G + + Y T + + E + M
Sbjct: 166 FGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMG 225
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYG 134
VA +W Y + +G K G+ + M +K +E G N YN ++ K G
Sbjct: 226 KFGLVANEWT-YTVLIHGLFKNGIKKQGFEMYEKMQEH--GVFPNLYTYNCVMNQLCKDG 282
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ D +++ E+ ++ V Y +I L + A K+ ++ +S + + N
Sbjct: 283 RTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYN 342
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
LID +C G L KA +L K +G + ++ L +G+ + A + +K++
Sbjct: 343 TLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEER 402
Query: 254 YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KPS + +D F ++ A + + G +P
Sbjct: 403 -----GIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVP 441
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 99/213 (46%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M+ + + YN+++ + G K SL +++ G++ TY +S +
Sbjct: 326 MDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCR 385
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G K++ ME + + V Y + + + + ++ A+ L+ S E++
Sbjct: 386 KGDTSGAAKMVKEME-ERGIKPSKVTYTILIDTFARSDNMETAIQ-LRSSMEELGLVPDV 443
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+V++ + G+ ++ R+++ + +K ++ Y +I K A ++F +
Sbjct: 444 HTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRD 503
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
E + L + ++LI V C+ L++AE+LV
Sbjct: 504 MEEKELAPNVASYSYLIRVLCKERKLKEAEDLV 536
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 116/256 (45%), Gaps = 11/256 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ MR G V YN+++ + + G ++ + L+ M E G+ + T+ + ++
Sbjct: 180 LRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICK 239
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E K+ M + +A D V Y T+ GY KVG +AL++ + + V
Sbjct: 240 AGRMEDARKVFDEMVKE-GLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVV 298
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK---LDDLESAEKIF 177
+ ++I + + V + E+ ++ +++ + +I K LDD A +
Sbjct: 299 TFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREM 358
Query: 178 EEWESQA--LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ Q +CY N LI+ YC G +++A LV + KG + V ++ + + Y
Sbjct: 359 RQCRIQPSVVCY-----NALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYC 413
Query: 236 QNSQIHKAVEAMKKVL 251
+N H A + +++L
Sbjct: 414 KNGDTHSAFQLNQQML 429
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 23/247 (9%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V + S++ + K GN E+ L+ EM E G+ + T+ +A D +G
Sbjct: 292 GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITF----TALIDGFCKKGF 347
Query: 68 --DKILTMMEA-DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-Y 123
D +L + E + V Y + NGY VG +D+A +++ E + KG K + Y
Sbjct: 348 LDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVR--EMEAKGVKPDVVTY 405
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKI 176
+ IL+ Y K G ++ + ++L NG Y ++I L + L A +
Sbjct: 406 STILSAYCKNGDTHSAFQLNQ------QMLENGVLPDAITYSSLIRVLCEEKRLGDAHVL 459
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+ S L D LID +C+ G +E+A +L + G V ++ L G +
Sbjct: 460 FKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSK 519
Query: 237 NSQIHKA 243
+++ +A
Sbjct: 520 SARTKEA 526
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 123/295 (41%), Gaps = 17/295 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G A + + YN++L L + M +G+ + YTY + A +
Sbjct: 118 GYAPSVLAYNAVL-LALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176
Query: 68 DKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAY 123
+L M DPN V Y T+ + + G +D+A ++ E G K N +
Sbjct: 177 LSVLRDMRGAGCDPNA----VTYNTLVAAFCRAGEVDRAERLVDMMRE--GGLKPNLVTF 230
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N ++ K G+ +D +++ E+ K+ + Y ++ K+ A +F E
Sbjct: 231 NSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTR 290
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + D LI V C+ G LE+A LV + +G +++ ++ L G+ + +
Sbjct: 291 KGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDD 350
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A+ A++++ + +PSV A ++ + G + A + + KG P
Sbjct: 351 ALLAVREMRQC-----RIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKP 400
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 72/350 (20%), Positives = 138/350 (39%), Gaps = 60/350 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR + + V YN+++ Y G ++ L+ EME G+ D TY T LSAY
Sbjct: 355 VREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCK 414
Query: 61 ASD-HEGIDKILTMME-----------------------ADPNVAL----------DWVI 86
D H M+E D +V D V
Sbjct: 415 NGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVT 474
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA--YNVILTLYGKYGKKDDVLR-IW 143
Y ++ +G+ K G +++AL++ +E +K + Y+V++ K + + R ++
Sbjct: 475 YTSLIDGHCKEGNVERALSL---HDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLF 531
Query: 144 ELYKKAVKVLNNGY-------RNV-ISSLLKLDD-------LESAEKIFEEWESQALCYD 188
+LY + N Y RN + S+L L + A+K+++ + D
Sbjct: 532 KLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLD 591
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ + LI +CR G + KA + G + S L G + + +A + ++
Sbjct: 592 GSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQ 651
Query: 249 KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++L E+ A +D EG++ + + + G +P+
Sbjct: 652 QLLNCCSL-----ADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLPS 696
>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 401
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 5/205 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V YNS++ K G + + M + G+ D TY T L YA
Sbjct: 174 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYAT 233
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K +++A+ + K +Q G N
Sbjct: 234 KGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ--GLNPN 290
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D + +E + + ++ + Y ++I SL D E AE++F
Sbjct: 291 AVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFL 350
Query: 179 EWESQALCYDTRIPNFLIDVYCRNG 203
E + +C T N +ID +C+ G
Sbjct: 351 EMLDRGICLSTIFFNSIIDSHCKEG 375
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 11/199 (5%)
Query: 38 EMEENGITYDRYTYCTRLSAYADAS-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96
E+ GI D ++Y L+ D + E ++ + M + + D V Y+TV NG+ K
Sbjct: 42 ELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFK 100
Query: 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNN 155
G LDK L +++I V YN I+ K D + + + K V
Sbjct: 101 EGDLDKML------DQRISPNVV--TYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 152
Query: 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215
Y +++ + A ++ S + D N L+D C+NG +A + +
Sbjct: 153 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 212
Query: 216 KLKGREIHVKSWYYLATGY 234
+G + + ++ L GY
Sbjct: 213 TKRGLKPDITTYGTLLQGY 231
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 16/297 (5%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D G+ +N +++ ++G ++ EM G+ T+ T +S ASD
Sbjct: 107 DAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLN 166
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+ + +M A +A D Y G K G + A+ M ++ E +G N+ V
Sbjct: 167 NANALRGLM-AKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCE--RGLNPNTV--V 221
Query: 126 ILTLYGKYGKKDDV-----LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ TL + K+ DV LR WE+ + VK Y +++ ++ D+++A I EE
Sbjct: 222 LTTLIDAHCKEGDVTAGLELR-WEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEM 280
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L D LID C+ G L+ A + +G + ++ L +G S+
Sbjct: 281 RKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGL---SKA 337
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++V+A +++L +P + +D F GD+ ++ + +KG P
Sbjct: 338 GRSVDA-ERILCEMME-AGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNP 392
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 98/214 (45%), Gaps = 11/214 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ V YN+++ + + + + + ++ EM ++G+ D+ TY T + D
Sbjct: 244 EMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLI----DGC 299
Query: 63 DHEG-IDKILTMME--ADPNVALDWVIYATVGNGYGKVGL-LDKALAMLKKSEEQIKGAK 118
EG +D + M + +D VALD V Y + +G K G +D + + E ++
Sbjct: 300 CKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQ--P 357
Query: 119 VNSAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N+ Y +++ + K G K + E+ K Y V++ L +++A+ +
Sbjct: 358 DNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLL 417
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ +C + N L+D +C++G + E L
Sbjct: 418 NAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL 451
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 7/243 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+A Y + ++ KTG + + EM E G+ + T + A+ D
Sbjct: 175 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 234
Query: 64 -HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNS 121
G++ M A V D V Y + NG+ +V + A ++++ ++ +K KV
Sbjct: 235 VTAGLELRWEM--ATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVT- 291
Query: 122 AYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++ K G+ D + + E+ + V + + Y +IS L K AE+I E
Sbjct: 292 -YTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEM 350
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L D +ID +C+NG ++ + + KG+ + ++ + G+ Q+
Sbjct: 351 MEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQM 410
Query: 241 HKA 243
A
Sbjct: 411 KNA 413
>gi|12322983|gb|AAG51473.1|AC069471_4 hypothetical protein [Arabidopsis thaliana]
Length = 349
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDR-YTYCTRLSAYAD 60
Q MR + Y SM+ LY G +D ++ +M+ENG+ +D+ T L AYA
Sbjct: 120 QTMRVQNMLLKPYPYYSMIYLYALLGEKNMIDEILRQMKENGVEHDKNLTANNVLKAYAS 179
Query: 61 ASDHEGIDKILTMMEAD-PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D E ++ L +E + P +L W ++ Y K G KA+ ML+++E +
Sbjct: 180 LPDVEAMEMFLMGLEVEEPRFSLAWQTGISIAKAYLKGGSSRKAVEMLRRTELVVDTKSK 239
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWEL-YKKAVK 151
+SA V++ +Y G K D R+ L Y K+ K
Sbjct: 240 DSANKVLMMMYWDAGAKQDASRLSRLIYPKSKK 272
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 131/297 (44%), Gaps = 14/297 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR G+ + YN++L G ++ + + M E+GI D TY + + +
Sbjct: 230 EMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLN 289
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E + ++L ME N+ D Y + Y ++G + +A+ + ++ Q G N+A
Sbjct: 290 RLEKVSELLREMECGGNLP-DITSYNVLLEAYAELGSIKEAMGVFRQM--QAAGCVANAA 346
Query: 123 -YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD-LESAEKIFEEW 180
Y+V+L LYGK+G+ DDV ++ K + + G N++ + + +F +
Sbjct: 347 TYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDM 406
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + + + LI + GL E A+ ++ H KG K++ + + Q +
Sbjct: 407 AEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALY 466
Query: 241 HKAVEAMKKVLAAYQTL--VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+A L + T+ V P+VE+ + + F G AE + +N+ G
Sbjct: 467 EEA-------LVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGL 516
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 133/335 (39%), Gaps = 45/335 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M + G+ Y+ +++ + K EK+ L+ EME G D +Y L AYA+
Sbjct: 263 FRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAE 322
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + M+A VA + Y+ + N YGK G D + E ++ +
Sbjct: 323 LGSIKEAMGVFRQMQAAGCVA-NAATYSVLLNLYGKHGRYDDVRDLFL--EMKVSNTDPD 379
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-------------------------LYKKAVKVL- 153
+ YN+++ ++G+ G +V+ ++ LY+ A K+L
Sbjct: 380 AGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILL 439
Query: 154 ----------NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
+ Y VI + + E A +F N LI + R G
Sbjct: 440 HMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGG 499
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
L ++AE +++ G + V S+ + +RQ Q +AV++ ++ A +P+
Sbjct: 500 LYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKA-----NCEPN 554
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+L A L + G + E + + G +P+
Sbjct: 555 ELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPS 589
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 30/231 (12%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M ++G T YNS++ + + G +++ ++++ M E+G+ D +++ + A+
Sbjct: 476 MNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQ 535
Query: 64 HEGIDKILTMME---ADPN-VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+E K ME +PN + L+ V+ Y GL+D+ EEQ + K
Sbjct: 536 YEEAVKSYVEMEKANCEPNELTLEAVLSI-----YCSAGLVDEG-------EEQFQEIKA 583
Query: 120 NS------AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD-DLES 172
+ Y ++L LY K + +D + L + + + VI ++K D D ES
Sbjct: 584 SGILPSVMCYCMMLALYAKNDRLNDA---YNLIDAMITMRVSDIHQVIGQMIKGDFDDES 640
Query: 173 ----AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
E +F++ S+ R N L++ E+A ++N +G
Sbjct: 641 NWQIVEYVFDKLNSEGCGLGMRFYNALLEALWCMFQRERAARVLNEASKRG 691
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 4/207 (1%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
++ M+ L + G +K + EM NG+ Y+Y ++AY ++L M
Sbjct: 136 IHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGM 195
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKY 133
+ + V+ + Y TV N + GL + L L +E + +G + + YN +L
Sbjct: 196 KQE-RVSPSILTYNTVINACARGGLDWEGLLGL-FAEMRHEGIQPDVITYNTLLGACAHR 253
Query: 134 GKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
G D+ ++ ++ V + N Y ++ + KL+ LE ++ E E D
Sbjct: 254 GLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSY 313
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKG 219
N L++ Y G +++A + + G
Sbjct: 314 NVLLEAYAELGSIKEAMGVFRQMQAAG 340
>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
Length = 900
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 5/210 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ GL T V Y+ ++ + K + + D+L E + + + Y + A+
Sbjct: 321 VEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQ 380
Query: 61 ASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + E ++++ ME D + +D +Y ++ +GY + +K L + ++ +E +
Sbjct: 381 SGNMERAEELVCEMEEDGIDAPID--VYHSMMHGYTIIQNENKCLVVFERLKECGFKPSI 438
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y +L LY K GK L I E+ +K N Y +I+ + L D +A IFE
Sbjct: 439 IS-YGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFE 497
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E L D I N LI+ +C+ G +++A
Sbjct: 498 EMLRSGLQPDRAIYNLLIEAFCKMGNMDRA 527
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 108/232 (46%), Gaps = 7/232 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T + YN+++ + ++ S++ +M GIT + +TY + YA + D
Sbjct: 569 MRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGD 628
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T ++ + + LD IY T+ K G + ALA+ ++ Q K + Y
Sbjct: 629 IGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ-KIPRNTFIY 686
Query: 124 NVILTLYGKYG---KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
N+++ + + G + +D+++ ++ + V + Y + I++ K D++ AEK+ EE
Sbjct: 687 NILIDGWARRGDVWEAEDLMK--QMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM 744
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
L + + LI + R L ++A KL G + S++ L T
Sbjct: 745 VDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVT 796
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +IS K++D +SA+ +F+E +++ + I + +I +C++G +E+AE LV +
Sbjct: 336 YSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVCEME 395
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL--VKWKPSVESLAACLDYF 274
G + + ++ + GY ++ K L ++ L +KPS+ S L+ +
Sbjct: 396 EDGIDAPIDVYHSMMHGY-------TIIQNENKCLVVFERLKECGFKPSIISYGCLLNLY 448
Query: 275 KDEGDIGGA 283
G + A
Sbjct: 449 VKIGKVAKA 457
>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 627
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 5/205 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V YNS++ K G + + M + G+ D TY T L YA
Sbjct: 174 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYAT 233
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K +++A+ + K +Q G N
Sbjct: 234 KGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ--GLNPN 290
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D + +E + + ++ + Y ++I SL D E AE++F
Sbjct: 291 AVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFL 350
Query: 179 EWESQALCYDTRIPNFLIDVYCRNG 203
E + +C T N +ID +C+ G
Sbjct: 351 EMLDRGICLSTIFFNSIIDSHCKEG 375
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 11/199 (5%)
Query: 38 EMEENGITYDRYTYCTRLSAYADAS-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96
E+ GI D ++Y L+ D + E ++ + M + + D V Y+TV NG+ K
Sbjct: 42 ELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFK 100
Query: 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNN 155
G LDK L +++I V YN I+ K D + + + K V
Sbjct: 101 EGDLDKML------DQRISPNVV--TYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 152
Query: 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215
Y +++ + A ++ S + D N L+D C+NG +A + +
Sbjct: 153 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 212
Query: 216 KLKGREIHVKSWYYLATGY 234
+G + + ++ L GY
Sbjct: 213 TKRGLKPDITTYGTLLQGY 231
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 138/323 (42%), Gaps = 23/323 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + ++ +N+ L L K+GN ++ E +D Y++ + A+ + +
Sbjct: 68 GHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR-TQFDVYSFWITIKAFCENGNVSKG 126
Query: 68 DKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AY 123
++L ME PNV IY + + G +D+A M + ++ G N Y
Sbjct: 127 FELLAQMETMGVSPNV----FIYTILIEACCRNGDIDQAKVMFSRMDDL--GLAANQYIY 180
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKA--VKVLNN--GYRNVISSLLKLDDLESAEKIFEE 179
+++ + K G K D +ELY+K V VL N Y ++I+ + L A K+F+E
Sbjct: 181 TIMINGFFKKGYKKDG---FELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDE 237
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + N LI CR G + KAE L+ K +++ L G Q
Sbjct: 238 ISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQ 297
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA+ ++K+ L+ P++ + + F G+ + + D+G P+
Sbjct: 298 LDKALSYLEKL-----KLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSK 352
Query: 300 LQDKLLDNVQNGKSNLETLRELY 322
+ +L N ++E E++
Sbjct: 353 VTYTILMNTFVRSDDIEKAYEMF 375
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 133/322 (41%), Gaps = 29/322 (9%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY---CTRLSAY 58
QKM+ +G+ YNS++ Y + G + E+ + G+ + TY L
Sbjct: 201 QKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRK 260
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
S EG+ + + +P + + +G G LDKAL+ L+K + I
Sbjct: 261 GQVSKAEGLLERMKRAHINPTTR----TFNMLMDGLCNTGQLDKALSYLEK-LKLIGLCP 315
Query: 119 VNSAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN++++ + K G V + E+ + + Y ++++ ++ DD+E A ++F
Sbjct: 316 TLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMF 375
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL--KGREIHVKS----WYYLA 231
+ L D LI C G N+V KL E+H++ + +
Sbjct: 376 HLMKRIGLVPDQHTYGVLIHGLCIKG------NMVEASKLYKSMVEMHLQPNDVIYNTMI 429
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
GY + +KA++ +++++ T P+V S + + +G A+ ++ +
Sbjct: 430 NGYCKECNSYKALKFLEEMVKNGVT-----PNVASYISTIQILCKDGKSIEAKRLLKEMT 484
Query: 292 DKGFIPTDLQDKLLDNVQNGKS 313
+ G P + L V KS
Sbjct: 485 EAGLKP---PESLCSKVGQAKS 503
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K++ +GL T V YN ++ + K GN + L+ EME+ GI+ + TY ++ +
Sbjct: 305 LEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVR 364
Query: 61 ASDHEGIDKILTMME 75
+ D E ++ +M+
Sbjct: 365 SDDIEKAYEMFHLMK 379
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 2/255 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ L V+YN + + K G + HEM+ NG+ D TY + +
Sbjct: 258 LDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCK 317
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A ++ M+ + V + Y T+ GYG G + A ++L++ + V
Sbjct: 318 ADRLNEAVELFEHMDQNKQVPCAYA-YNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVV 376
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S YN IL+ G+ G+ D+ L+ +E KK + Y +I L K LE+A + +
Sbjct: 377 S-YNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAM 435
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L + N ++D C+ L+ A ++ K ++ L G ++ ++
Sbjct: 436 KDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRV 495
Query: 241 HKAVEAMKKVLAAYQ 255
+A + +++L A Q
Sbjct: 496 DEAYKLYEQMLDANQ 510
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 4/209 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M++LG A ++ ++++++ + G + SL+ EM+ N + D Y + +
Sbjct: 223 FQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGK 282
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + K M+A+ + LD V Y ++ K L++A+ + + +Q K
Sbjct: 283 AGKVDMAWKXFHEMKAN-GLVLDDVTYTSMIGVLCKADRLNEAVELFEHM-DQNKQVPCA 340
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
AYN ++ YG GK +D + E ++ + + Y ++S L + ++ A K FEE
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE 400
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ A+ + N +ID+ C+ G LE A
Sbjct: 401 MKKDAI-PNLSTYNIMIDMLCKAGKLETA 428
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 117/254 (46%), Gaps = 11/254 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M D VVY S+++ ++K G E + +EM G + D L+ Y D
Sbjct: 503 EQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL----LNTYMDC 558
Query: 62 SDHEG-IDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
G I+K + + N+ D Y + +G K G +A + +EQ G
Sbjct: 559 VFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQ--GCV 616
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+++ AYN ++ + K GK + ++ E K K + Y +VI L K+D L+ A +
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FEE +S+ + + I + LID + + G +++A ++ KG +V +W L +
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 736
Query: 237 NSQIHKAVEAMKKV 250
+I +A+ + +
Sbjct: 737 AEEISEALVCFQSM 750
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 120/306 (39%), Gaps = 30/306 (9%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+D GL + N M+ K + S+ ++ D TYC+ +
Sbjct: 435 MKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR--- 491
Query: 64 HEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
H +D+ + E D N + V+Y ++ + K G K+ +I +
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR--------KEDGHKIYNEMLRL 543
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYK-----KAVKVLN-----NGYRNVISSLLKLDDLE 171
+ L L Y D V + E+ K + +K L Y +I L+K
Sbjct: 544 GCSPDLLLLNTY--MDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A ++F + Q DTR N +ID +C++G + KA L+ K KG E V ++ +
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
G + ++ +A ++ + L +V ++ +D F G I A +E L
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIEL-----NVVIYSSLIDGFGKVGRIDEAYLIMEELM 716
Query: 292 DKGFIP 297
KG P
Sbjct: 717 QKGLTP 722
>gi|242043362|ref|XP_002459552.1| hypothetical protein SORBIDRAFT_02g006520 [Sorghum bicolor]
gi|241922929|gb|EER96073.1| hypothetical protein SORBIDRAFT_02g006520 [Sorghum bicolor]
Length = 421
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 122/305 (40%), Gaps = 10/305 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++R+L L T N ML LY + + +D ++ ME I +TY +
Sbjct: 88 FNEIRELSLPLTVSACNQMLLLYKRVSRNKVVD-ILKLMENENIKPSLFTYKLMIDLKGR 146
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
++D G++ +L +M+ + D+ I V Y L +KA + E + +
Sbjct: 147 SNDTLGMESVLNLMKEN-GFEPDFGIQTMVAKFYISGDLAEKAEEVTNAMEVYVNANR-- 203
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
A +L LY G+ DDV RIW L + + I + KL +E AE+ F+
Sbjct: 204 HAIRSLLDLYAILGRPDDVERIWNL---CTEPKLEDFLAAIKAWGKLGHIERAEETFDAL 260
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ ++ N ++ VY N LL+K + + L G +W + Y + ++
Sbjct: 261 VKTSPKLTSKYFNAMLYVYAENELLDKGKKFIERMSLDGCPSSPLTWDAVVKLYVNSGEL 320
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
KA + V + P S L F ++GDI AE L + L
Sbjct: 321 AKADSFLANVT---EDNPDRYPLFRSYVILLKAFAEKGDIHNAEKIFNRLKQTSYPARTL 377
Query: 301 QDKLL 305
LL
Sbjct: 378 PYNLL 382
>gi|125606474|gb|EAZ45510.1| hypothetical protein OsJ_30168 [Oryza sativa Japonica Group]
Length = 651
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 12/240 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYA-DASDHEGIDKI 70
V Y ++++ +Y G F L EMEE G+ D ++ Y + A D EG+
Sbjct: 340 VTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLVIGALCKDGKPFEGMAVF 399
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTL 129
M++ A + IY + + GK G +A+A+ ++ ++ G K++S Y VI+
Sbjct: 400 ERMLKR--GCAANAAIYTALIDSMGKFGREKEAMALFERMKDS--GLKLDSVTYGVIVNC 455
Query: 130 YGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
++GK D+ + + +K + V Y ++I K ++ ++++FEE ++ D
Sbjct: 456 LCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPD 515
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ N LID ++G ++ A L + G + V ++ L G + HK EA+K
Sbjct: 516 SYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKE---HKNEEALK 572
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 4/214 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D GL +V Y ++ + G ++ + +E GI + Y + + +
Sbjct: 434 FERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGK 493
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + ++ M A V D Y + +G K G +D A A+ K+ E+ V
Sbjct: 494 AGMVDQSKELFEEMIAKGFVP-DSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVY 552
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y +++ K K ++ L+ W+ + K + +R + S L A +I +E
Sbjct: 553 T-YTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDE 611
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ +T + +I+V C+ G ++A L +
Sbjct: 612 LAPMGVIPETAHED-MINVLCKAGRFKQACKLAD 644
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 107/254 (42%), Gaps = 3/254 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEME-ENGITYDRYTYCTRLSAYAD 60
+ MR G+ + ++YN +L G + ++ M E+ + D +Y + Y
Sbjct: 256 KAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCR 315
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A L+ M+ + D V Y T+ + G + + ++ EE+ G +
Sbjct: 316 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 375
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
AY +++ K GK + + ++E + K+ Y +I S+ K + A +FE
Sbjct: 376 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFE 435
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L D+ +++ CR G L++A + KG ++ + L G+ +
Sbjct: 436 RMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAG 495
Query: 239 QIHKAVEAMKKVLA 252
+ ++ E ++++A
Sbjct: 496 MVDQSKELFEEMIA 509
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 22/257 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G + + YN ++ +Y+K G L+ M+ NG+ D +TY +S ++
Sbjct: 437 QMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGG 496
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E + M + ++ + V Y + NGY V +D ALA+ K E +
Sbjct: 497 KLEHAFSLFNEM-VEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVES-GNVPSSGT 554
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEK 175
YN++++ + K RI E K++ G Y + I L K A K
Sbjct: 555 YNMMISGFSKTN------RISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFK 608
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
IF E + + + + LID C+ G E AE L++ G E +V ++ L G
Sbjct: 609 IFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLD----DGCEPNVDTYTTLVRGLC 664
Query: 236 QNSQIHKA---VEAMKK 249
+ ++A VE+MKK
Sbjct: 665 GKGRCYEADQLVESMKK 681
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 124/318 (38%), Gaps = 49/318 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA-YADA 61
KM+ G Y +++ + G FE + H+M +G+ TY ++ Y +
Sbjct: 332 KMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEG 391
Query: 62 SDHEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ M+ D PN Y + G+ +G + KA A+ + + V
Sbjct: 392 RFETALTIFEWMLSHDSLPNTE----TYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNV 447
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN+I+ +Y K G ++ +R+ E+ K NG LKLD A
Sbjct: 448 IT-YNIIIHIYFKQGYMNNAMRLLEMMK------GNG--------LKLDTWTYAN----- 487
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
LI + R G LE A +L N G +V ++ + GY ++
Sbjct: 488 ---------------LISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAK 532
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ A+ K++ + PS + + F I AENF + +G +P
Sbjct: 533 VDDALALFWKMVESGNV-----PSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNV 587
Query: 300 LQ-DKLLDNV-QNGKSNL 315
+ +D + +NG+++L
Sbjct: 588 ITYTSFIDGLCKNGRTSL 605
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 125/306 (40%), Gaps = 32/306 (10%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G+ +N+M+K+ G ++ + +M + G D +TY + + +
Sbjct: 192 EMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNG 251
Query: 63 DHEGIDKILTMME------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-K 115
+ +D M + DPN V Y+ + NG G L++A+ ML EE I K
Sbjct: 252 N---LDLAFEMFDRMVKDGCDPNS----VTYSALINGLCSEGRLEEAMDML---EEMIDK 301
Query: 116 GAKVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
G + AY + + G+ + +++ ++ K+ Y +IS L + E A
Sbjct: 302 GIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVA 361
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA----ENLVNHEKLKGREIHVKSWYY 229
++ + + L + LI+ G E A E +++H+ L E ++
Sbjct: 362 IGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTE----TYNV 417
Query: 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289
+ G+ I KA ++L A + P+V + + + +G + A +E+
Sbjct: 418 IIKGFCSIGYIQKATAIFDQMLKAGPS-----PNVITYNIIIHIYFKQGYMNNAMRLLEM 472
Query: 290 LNDKGF 295
+ G
Sbjct: 473 MKGNGL 478
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 134/310 (43%), Gaps = 40/310 (12%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR G+ + YN++L G ++ + + M E+GI D TY + + +
Sbjct: 232 EMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLN 291
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E + ++L ME+ N+ D Y + Y ++G + +A+ + ++ Q G N+A
Sbjct: 292 RLEKVSELLREMESGGNLP-DITSYNVLLEAYAELGSIKEAMDVFRQM--QAAGCVANAA 348
Query: 123 -YNVILTLYGKYGKKDDVLRIW------------ELYKKAVKVLNNG--YRNVISSLLKL 167
Y+V+L LYGK+G+ DDV I+ Y ++V G ++ V++ +
Sbjct: 349 TYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDM 408
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+ E+ E E +E LI + GL E A+ ++ H KG K++
Sbjct: 409 VE-ENVEPNMETYEG------------LIFACGKGGLYEDAKKILLHMNEKGIVPSSKAY 455
Query: 228 YYLATGYRQNSQIHKAVEAMKKVLAAYQTL--VKWKPSVESLAACLDYFKDEGDIGGAEN 285
+ + Q + +A L + T+ V P+VE+ + + F G AE
Sbjct: 456 TGVIEAFGQAALYEEA-------LVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEA 508
Query: 286 FIELLNDKGF 295
+ +N+ G
Sbjct: 509 ILSRMNESGL 518
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 135/336 (40%), Gaps = 47/336 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M + G+ Y+ +++ + K EK+ L+ EME G D +Y L AYA+
Sbjct: 265 FRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAE 324
Query: 61 -ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S E +D + M+A VA + Y+ + N YGK G D + E ++
Sbjct: 325 LGSIKEAMD-VFRQMQAAGCVA-NAATYSVLLNLYGKHGRYDDVRDIFL--EMKVSNTDP 380
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIWE-------------------------LYKKAVKVL 153
++ YN+++ ++G+ G +V+ ++ LY+ A K+L
Sbjct: 381 DAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKIL 440
Query: 154 -----------NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
+ Y VI + + E A +F N I + R
Sbjct: 441 LHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARG 500
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
GL ++AE +++ G + V S+ + +RQ Q +AV++ ++ A +P
Sbjct: 501 GLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKA-----NCEP 555
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ +L L + G + +E + + G +P+
Sbjct: 556 NELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPS 591
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/301 (18%), Positives = 131/301 (43%), Gaps = 13/301 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ART VY +++ Y + G F L++ M++ ++ TY T ++A A
Sbjct: 161 EMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGG 220
Query: 63 -DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D EG+ + M + + D + Y T+ GL D+A + + E +N+
Sbjct: 221 LDWEGLLGLFAEMRHE-GIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINT 279
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEW 180
Y+ ++ +GK + + V + + + + Y ++ + +L ++ A +F +
Sbjct: 280 -YSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQM 338
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ + + L+++Y ++G + ++ K+ + ++ L Q+
Sbjct: 339 QAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILI-------QV 391
Query: 241 HKAVEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
K+V+ + +V+ +P++E+ + G A+ + +N+KG +P+
Sbjct: 392 FGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPS 451
Query: 299 D 299
Sbjct: 452 S 452
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 25/241 (10%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
YN +++++ + G F+++ +L H+M E + + TY + A +E KIL M
Sbjct: 384 TYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHM 443
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
+ + Y V +G+ L ++AL + E V + YN + + + G
Sbjct: 444 N-EKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVET-YNSFIHAFARGG 501
Query: 135 KKDDVLRIWELYKKAVKVLN-----------NGYRNVISSLLKLDDLESAEKIFEEWESQ 183
LYK+A +L+ + + VI + + E A K + E E +
Sbjct: 502 ----------LYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEME-K 550
Query: 184 ALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
A C + ++ VYC GL++++E K G V + + Y +N +++
Sbjct: 551 ANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLND 610
Query: 243 A 243
A
Sbjct: 611 A 611
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 4/207 (1%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+Y M+ L + G +K + EM NG+ Y Y ++AY ++L M
Sbjct: 138 IYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGM 197
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKY 133
+ + V+ + Y TV N + GL + L L +E + +G + + YN +L
Sbjct: 198 KQE-RVSPSILTYNTVINACARGGLDWEGLLGL-FAEMRHEGIQPDVITYNTLLGACAHR 255
Query: 134 GKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
G D+ ++ ++ V + N Y ++ + KL+ LE ++ E ES D
Sbjct: 256 GLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSY 315
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKG 219
N L++ Y G +++A ++ + G
Sbjct: 316 NVLLEAYAELGSIKEAMDVFRQMQAAG 342
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M ++G T YNS + + + G +++ ++++ M E+G+ D +++ + A+
Sbjct: 478 MNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQ 537
Query: 64 HEGIDKILTMME---ADPN-VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+E K ME +PN + L+ V+ Y GL+D +SEEQ + K
Sbjct: 538 YEEAVKSYVEMEKANCEPNELTLEVVLSV-----YCSAGLVD-------ESEEQFQEIKA 585
Query: 120 NS------AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLD-DLE 171
+ Y ++L LY K + +D I E+ V ++ G I ++K D D E
Sbjct: 586 SGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMITMRVSDIHQG----IGQMIKGDFDDE 641
Query: 172 S----AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
S E +F++ S+ R N L++ E+A ++N +G
Sbjct: 642 SNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWWMFQRERAARVLNEASKRG 693
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 138/323 (42%), Gaps = 23/323 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + ++ +N+ L L K+GN ++ E +D Y++ + A+ + +
Sbjct: 68 GHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR-TQFDVYSFGITIKAFCENGNVSKG 126
Query: 68 DKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AY 123
++L ME PNV IY + + G +D+A M + ++ G N Y
Sbjct: 127 FELLAQMETMGVSPNV----FIYTILIEACCRNGDIDQAKVMFSRMDDL--GLAANQYIY 180
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKA--VKVLNN--GYRNVISSLLKLDDLESAEKIFEE 179
+++ + K G K D +ELY+K V VL N Y ++I+ + L A K+F+E
Sbjct: 181 TIMINGFFKKGYKKDG---FELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDE 237
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + N LI CR G + KAE L+ K +++ L G Q
Sbjct: 238 ISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQ 297
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA+ ++K+ L+ P++ + + F G+ + + D+G P+
Sbjct: 298 LDKALSYLEKL-----KLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSK 352
Query: 300 LQDKLLDNVQNGKSNLETLRELY 322
+ +L N ++E E++
Sbjct: 353 VTYTILMNTFVRSDDIEKAYEMF 375
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 133/322 (41%), Gaps = 29/322 (9%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY---CTRLSAY 58
QKM+ +G+ YNS++ Y + G + E+ + G+ + TY L
Sbjct: 201 QKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRK 260
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
S EG+ + + +P + + +G G LDKAL+ L+K + I
Sbjct: 261 GQVSKAEGLLERMKRAHINPTTR----TFNMLMDGLCNTGQLDKALSYLEK-LKLIGLCP 315
Query: 119 VNSAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN++++ + K G V + E+ + + Y ++++ ++ DD+E A ++F
Sbjct: 316 TLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMF 375
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL--KGREIHVKS----WYYLA 231
+ L D LI C G N+V KL E+H++ + +
Sbjct: 376 HLMKRIGLVPDQHTYGVLIHGLCIKG------NMVEASKLYKSMVEMHLQPNDVIYNTMI 429
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
GY + +KA++ +++++ T P+V S + + +G A+ ++ +
Sbjct: 430 NGYCKECNSYKALKFLEEMVKNGVT-----PNVASYISTIQILCKDGKSIEAKRLLKEMT 484
Query: 292 DKGFIPTDLQDKLLDNVQNGKS 313
+ G P + L V KS
Sbjct: 485 EAGLKP---PESLCSKVGQAKS 503
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K++ +GL T V YN ++ + K GN + L+ EME+ GI+ + TY ++ +
Sbjct: 305 LEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVR 364
Query: 61 ASDHEGIDKILTMME 75
+ D E ++ +M+
Sbjct: 365 SDDIEKAYEMFHLMK 379
>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
Length = 905
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 11/216 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR G+ V+ S++ Y + S + EM+ G+ TY +S +A
Sbjct: 320 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAK 379
Query: 61 ASDH------EGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
+D E ++++ ME D + +D +Y ++ +GY + +K L + ++ +E
Sbjct: 380 INDSHQSGNMERAEELVREMEEDGIDAPID--VYHSMMHGYTIIQNENKCLVVFERLKEC 437
Query: 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLES 172
+ S Y +L LY K GK L I E+ +K N Y +I+ + L D +
Sbjct: 438 GFKPSIIS-YGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN 496
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
A IFEE L D I N LI+ +C+ G +++A
Sbjct: 497 AFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRA 532
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 108/232 (46%), Gaps = 7/232 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T + YN+++ + ++ S++ +M GIT + +TY + YA + D
Sbjct: 574 MRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGD 633
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T ++ + + LD IY T+ K G + ALA+ ++ Q K + Y
Sbjct: 634 IGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ-KIPRNTFIY 691
Query: 124 NVILTLYGKYG---KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
N+++ + + G + +D+++ ++ + V + Y + I++ K D++ AEK+ EE
Sbjct: 692 NILIDGWARRGDVWEAEDLMK--QMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM 749
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
L + + LI + R L ++A KL G + S++ L T
Sbjct: 750 VDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVT 801
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 118/272 (43%), Gaps = 19/272 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M GL +YN +++ + K GN ++ ++ +M++ + + + YA
Sbjct: 501 FEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAV 560
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A D + L +M V + Y + +G + + +A+++L K I G N
Sbjct: 561 AGDMKSALDTLDLMRRSGCVP-TVMTYNALIHGLVRKHKVQRAVSVLDKM--SIAGITPN 617
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEK 175
Y +I+ Y G D+ + +E + K +K+ Y ++ + K ++SA
Sbjct: 618 EHTYTIIMRGYAASG---DIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 674
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG--REIHVKSWYYLATG 233
+ E Q + +T I N LID + R G + +AE+L+ K G IH + Y A
Sbjct: 675 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACC 734
Query: 234 YRQNSQ-IHKAVEAM-----KKVLAAYQTLVK 259
+ Q K +E M K + Y TL+K
Sbjct: 735 KAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 766
>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
Length = 709
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 122/304 (40%), Gaps = 40/304 (13%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++MR +G+ V YN ++K + ++ M +NG D+ +Y T +S
Sbjct: 222 ERMRRVGVDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKE 281
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ +L M D + D + Y + +G K G D+AL L++SE
Sbjct: 282 KRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESE---------- 331
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
GK + D V GY ++ S + A++I E
Sbjct: 332 ---------GKRFRVDQV----------------GYSAIVHSFCLNGRMSEAKEIIGEMI 366
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S+ D + ++D +CR G L++A ++ H G + + + L G + +
Sbjct: 367 SKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSS 426
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
+A E + K + W PS + + + F+ EG + + + + + KGF PT ++
Sbjct: 427 EAWELLNKSEEEW-----WTPSGITYSVIMHGFRREGKLVESCDVVMQMLQKGFFPTAVE 481
Query: 302 DKLL 305
LL
Sbjct: 482 INLL 485
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 130/313 (41%), Gaps = 31/313 (9%)
Query: 1 MQKMR-DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+++MR D G+ + YN ++ K G+ ++ + + E E D+ Y + ++
Sbjct: 291 LERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFC 350
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+I+ M + D V Y+ V +G+ ++G LD+A M+K + G K
Sbjct: 351 LNGRMSEAKEIIGEMISK-GCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKN--GCKP 407
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIWELYKKA-----------VKVLNNGYRNVISSLLKL 167
N+ + +L K GK + WEL K+ V+ +G+R +
Sbjct: 408 NTVTHTALLNGLCKVGKSSEA---WELLNKSEEEWWTPSGITYSVIMHGFRR------EG 458
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+ES + + + + I N LI C+ +A++ + + KG I+V ++
Sbjct: 459 KLVESCDVVMQMLQKGFFPTAVEI-NLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNF 517
Query: 228 YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ G+ + + A+ + + L P V + +D +G + A +
Sbjct: 518 TTVIHGFSRQGDLESALSLLDDMY-----LTNRHPDVVTYTVVVDALGRKGKMKEATALV 572
Query: 288 ELLNDKGFIPTDL 300
E + ++G +PT +
Sbjct: 573 EKMLNRGLLPTPV 585
>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
Length = 1354
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 3/194 (1%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN+M+ +Y + G E S+ M+E G T D TY + L A+A E +++I MM
Sbjct: 223 YNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMR 282
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
D + D + Y T+ + YGK G+ KA + + +E+ + + + V++ GK G
Sbjct: 283 -DARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPD-SVTFTVLIDTLGKAGF 340
Query: 136 KDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
++ ++E + K V+ + +I + K D AE + + D +
Sbjct: 341 VNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSV 400
Query: 195 LIDVYCRNGLLEKA 208
++DV+ + + EK
Sbjct: 401 MLDVFFKAEMPEKC 414
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 142/332 (42%), Gaps = 24/332 (7%)
Query: 4 MRDL---GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
RDL G A T Y+++L Y +TGNFE+ + M G+ + L A+
Sbjct: 658 FRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGR 717
Query: 61 ASDHEGIDKI---LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + + + L M PN VI+ + + + G L++A +M ++ E
Sbjct: 718 AGKAKELSEFYQRLPEMGITPNSRTFVVIF----HAFSRNGNLEEARSMYRQMREAGFSP 773
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
+ + +L LY + + D + + KKA L+ + Y ++IS KL A +
Sbjct: 774 SIQ-VFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALV 832
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+ + D N LI +Y RN ++++A+ L+ G ++ ++ L + Y +
Sbjct: 833 FKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGR 892
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
Q ++ E + K +A KP + ++ ++ G+ E IE + GF
Sbjct: 893 -LQAYEDAELVFKSIAE----TGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFE 947
Query: 297 PT-DLQDKLLDNVQNGKSN------LETLREL 321
P+ L+D+ G + LETL E+
Sbjct: 948 PSLTTIHMLMDSYGKGGATGKAEEVLETLPEI 979
>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T YN +L + +G E+ ++ M + T D +Y T LSAY +
Sbjct: 338 FEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVN 397
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKG 116
ASD G + ++ D PNV V Y + GY K LDK M++K EE Q++G
Sbjct: 398 ASDMAGAENFFNRLKQDGLEPNV----VTYGALIKGYAKTNNLDK---MMEKYEEMQLRG 450
Query: 117 AKVNSAYNVILTLYGKYGKKDD 138
K N + T+ YGK D
Sbjct: 451 VKANQ--TIFTTIMDAYGKNKD 470
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 128/312 (41%), Gaps = 25/312 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNF----EKLDSLMHEMEENGITYDRYTYCTRLS 56
++M+ G + V Y +LK + + F E ++L+ E E++ + D+ + +
Sbjct: 198 FRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDE-EKSPLKPDQKMFHMMIY 256
Query: 57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ A ++E +I +M V V Y ++ + + K +++S Q
Sbjct: 257 MHRKAGNYEKARQIFALM-TQRGVPKSTVTYNSLMSFETNYKEVSKIYDQMQRSGLQPDV 315
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+Y +++ YGK ++D+ L ++E + V+ + Y ++ + +E A
Sbjct: 316 I----SYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQART 371
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+ D ++ Y + AEN N K G E +V ++ L GY
Sbjct: 372 VFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYA 431
Query: 236 QNSQIHKAVEAMKKV----LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ + + K +E +++ + A QT+ +D + D G A + + +
Sbjct: 432 KTNNLDKMMEKYEEMQLRGVKANQTI---------FTTIMDAYGKNKDFGSAVIWYKEME 482
Query: 292 DKGFIPTDLQDK 303
G +P D + K
Sbjct: 483 QYG-VPPDQKAK 493
>gi|224121676|ref|XP_002330625.1| predicted protein [Populus trichocarpa]
gi|222872229|gb|EEF09360.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 54 RLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
RL+AY +S+ E +DK+L ME DP +++DW V NGY K GL++K LA+LK++E+
Sbjct: 8 RLNAYVASSNIEEMDKLLNKMETDPLISIDWNTCFVVANGYLKAGLIEKTLALLKRAEQL 67
Query: 114 IKGAKVNSAYNVILT----LYGKYGKKDDVLRIWELYKKAVKVLNNGYR 158
I + S + + L Y ++++ E KKA+ + G++
Sbjct: 68 ITQTRDCSGMELPPSPWDHLVTGYLFGGEMVKAAETLKKAISISKPGWK 116
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 203 GLLEKAENLVNHEK-LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
LL++AE L+ + G E+ W +L TGY ++ KA E +KK ++ + WK
Sbjct: 59 ALLKRAEQLITQTRDCSGMELPPSPWDHLVTGYLFGGEMVKAAETLKKAISISKP--GWK 116
Query: 262 PSVESLAACL 271
P+ +L CL
Sbjct: 117 PNFYALTTCL 126
>gi|356555246|ref|XP_003545945.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Glycine max]
Length = 617
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 35/275 (12%)
Query: 1 MQKMRD-LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
++KM D L TV+YN +++L K G+ E L EM N + D TY + ++
Sbjct: 316 LRKMEDTFNLHADTVMYNLVIRLCCKKGDIETALKLTSEMSSNDLCPDLITYMAIVEGFS 375
Query: 60 DASDHE---GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+A E + K++ + PN+ VI + + +G+ + G +++AL +L + E+
Sbjct: 376 NAGRSEEAYSVLKVMRLHGCSPNL----VILSAILDGFCRSGSMERALELLDEMEKGGVC 431
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA---------VKVLNNG--YRNVISSLL 165
Y ++ + K G+ + L I + K +L +G Y +++ SL+
Sbjct: 432 TPNVVTYTSVIQSFCKRGQWKEALDILDRMKAFGCHANHHNYQYILEHGDFYNSLVISLI 491
Query: 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG-------LLEKAENLVNHEKLK 218
++ LE AEK+F+E + + DT + L+ C LLE EN K
Sbjct: 492 RIKKLEEAEKLFKEMLAGDVRLDTLASSLLLKELCMKDQILDGFYLLEAIEN-------K 544
Query: 219 GREIHVKSWYY--LATGYRQNSQIHKAVEAMKKVL 251
G + S Y L G Q S + +A + K +L
Sbjct: 545 GFLSSIDSDIYSILLIGLCQRSHLKEATKLAKIML 579
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 16/299 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G Y +++ +G + L H M +G+ + TY ++ +
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M PN+ V Y + GY +G D AML + +G N
Sbjct: 406 IKYAFVVLNLMGRNGCSPNI----VTYNEMIKGYCILG--DPKKAMLVMNNMLQRGHSAN 459
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN I+ Y G LRI +L + K Y +I K+ +ESA +F
Sbjct: 460 LVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN 519
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E LC + LID YC++ L+ A +L+ H K G +V+++ L G + +
Sbjct: 520 EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQN 579
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A E + KV+ P+V + A +D G A + ++G +P
Sbjct: 580 NFSGA-EELCKVMIEEGIF----PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLP 633
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 127/310 (40%), Gaps = 34/310 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M G+ ++YN+++ K GN +++M ++ E+ ++ D +TY + + +
Sbjct: 204 HRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRK 263
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + ++ M +PN V Y+T+ NG G +++A +++ E I
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNT----VTYSTLINGLCDSGRVNEAFDLIR---EMILHGI 316
Query: 119 VNSAYNVI--LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ +A+ + G +D R++ ++ K + Y +IS L L+ A
Sbjct: 317 LPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIG 376
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F + +T N LI++ N ++ A ++N G ++ ++ + GY
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436
Query: 236 QNSQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
KA+ M + L Y T++K + D G+ A +
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG-------------YCDSGNTTSALRIL 483
Query: 288 ELLNDKGFIP 297
+L+ D G P
Sbjct: 484 DLMRDGGCKP 493
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 115/297 (38%), Gaps = 19/297 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + G + Y+S+++ + G E+ ++L E+E +G+ D TY + AY +
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684
Query: 63 DHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
E L M++A L W + + L D+ LA L +
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTL-WTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTT 743
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+ + + K + D L +V+V N ++S+L A ++
Sbjct: 744 DQDAVSVMSAKLAELDPGL--------SVQVQN----ALVSNLSTAGRWFEANELLGSMI 791
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
SQ LC D N L+ R ++ A + H +G E+H+ + L Q+H
Sbjct: 792 SQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICAL---CQLH 848
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ EA ++ + W P A +D +G F+ ++ + ++P+
Sbjct: 849 RRKEA--RITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 903
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M G + V YN+++K Y +GN ++ M + G D ++Y + +
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S E + M D + + V Y + +GY K LD A ++L+ + G + N
Sbjct: 508 ISKMESAFGLFNEM-VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS--GCRPN 564
Query: 121 -SAYNVI---LTLYGKYGKKDDVLRIW-----------------------------ELYK 147
YNV+ LT + +++ ++ E++
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624
Query: 148 KAVK--VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
K ++ L N Y ++I +L + +E AE +F E E L D +I+ Y +G
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684
Query: 204 LLEKAENLV 212
+E A N +
Sbjct: 685 KVEHAFNFL 693
>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
Length = 475
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 123/270 (45%), Gaps = 17/270 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ L+ Y+S++ Y + GN + + E NGI + +TY ++ +
Sbjct: 160 FEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCK 219
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + ++T M+ V ++ +++ T+ +GY + ++DKAL + E+ G +++
Sbjct: 220 IGQMEAAEMLVTDMQVR-GVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKM--GIELD 276
Query: 121 S-AYNVILTLYGKYGKKDD---VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN + + + D+ +LRI + +K V+ + Y +IS D+ A ++
Sbjct: 277 VYTYNTLACGLRRANRMDEAKNLLRI--MIEKGVRPNHVSYTTLISIHCNEGDMVEARRL 334
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E N ++D Y + G + +AE N + KG + S+ L G+
Sbjct: 335 FREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCV 394
Query: 237 NSQIHKAV---EAMKKV-----LAAYQTLV 258
N ++ A+ E MK+ L AY L+
Sbjct: 395 NGKVDVALRLFEEMKQRGSKPNLVAYTALI 424
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 133/315 (42%), Gaps = 51/315 (16%)
Query: 23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME---ADPN 79
Y K+G L+ EM +G+ + Y + L AY D + + ++L +ME +P
Sbjct: 77 YCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPT 136
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139
V Y + +G + K A+ E++K ++ ++ Y + +V
Sbjct: 137 VG----TYTILVDGLSAARDITKVEAVF----EEMKSKNLSGDVYFYSSVINAYCRAGNV 188
Query: 140 LRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
R E++ + V NG Y +I+ K+ +E+AE + + + + + + +
Sbjct: 189 RRASEVFDECV---GNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVF 245
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL- 251
N +ID YCR +++KA + + G E+ V ++ LA G R+ +++ +A ++ ++
Sbjct: 246 NTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIE 305
Query: 252 -------AAYQTLVKW----------------------KPSVESLAACLDYFKDEGDIGG 282
+Y TL+ +PS+ + +D + +G I
Sbjct: 306 KGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIRE 365
Query: 283 AENFIELLNDKGFIP 297
AE F + KG +P
Sbjct: 366 AERFKNEMEKKGLVP 380
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 137/312 (43%), Gaps = 14/312 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M++ + + Y+ ++ K G EK + +M+ G + +TY + +
Sbjct: 147 FEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGK 206
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
S H +DK + E + V+Y ++ +G G+ G D A + + E KG +
Sbjct: 207 -SGH--VDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFR--EMLSKGLQ 261
Query: 119 VNSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
+ + ++ G G+ + RI++ + L+ N Y +I +L K L+ A +I
Sbjct: 262 PDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEI 321
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E E L D N L+D C++G + A L+ K G V + L G R+
Sbjct: 322 FGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRK 381
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ ++ +A ++L Q+L ++P V + +D G I A E ++ KGF
Sbjct: 382 SGRVEEA----GQLLLEMQSL-GYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFA 436
Query: 297 PTDLQDKLLDNV 308
T + +L+ +
Sbjct: 437 NTVTYNTILNGL 448
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 135/333 (40%), Gaps = 43/333 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M A T YNS++ + K G +K ++ M ++G+ D YT+ ++A+
Sbjct: 77 LKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKK 136
Query: 61 ASDHEGIDKILTMME---ADPNVA-----LDWVI-------------------------- 86
A + + K+ M+ PNV +D V
Sbjct: 137 AKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFT 196
Query: 87 YATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-E 144
Y ++ +G GK G +DKA + ++ + E + +V YN ++ G+ G+ D +++ E
Sbjct: 197 YTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRV--VYNSLIHGLGRSGRADAAAKLFRE 254
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ K ++ + + +++ L A +IF+E D + N LID C++
Sbjct: 255 MLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKR 314
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
L++A + + G V ++ L G ++ +IH A +L P V
Sbjct: 315 LDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAF-----ILLGDMKRAGCTPDV 369
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+D + G + A + + G+ P
Sbjct: 370 TVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEP 402
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWEL 145
I+ + GY GLL+K++ LK+ E + A SAYN ++ + K G L ++ +
Sbjct: 56 IFIELARGYASAGLLEKSVEALKRMEGH-RCALTASAYNSLIDAFVKAGYTQKALAVYRV 114
Query: 146 Y-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ ++ + ++++ K ++S K+FEE ++Q + + LID C+ G
Sbjct: 115 MGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGG 174
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+EKA + K +G ++ ++ + G ++ + KA
Sbjct: 175 VEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKA 213
>gi|387016706|gb|AFJ50472.1| Leucine-rich PPR motif-containing protein, mitochondrial [Crotalus
adamanteus]
Length = 1377
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K++D G+ YN++LK+Y + + D + +MEE + +R TY ++AY +
Sbjct: 149 KLKDAGVVFDVSHYNALLKVYLQNEHDFSPDKFLTKMEEMDVQPNRVTYQRLIAAYCNKG 208
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D +G KIL +M++ ++ + +I++ + G+ K G +D A+ +L +K K+
Sbjct: 209 DIDGSSKILNIMKSK-DLPITELIFSALVTGHAKAGDMDNAINIL----SVMKDTKIEPG 263
Query: 123 YNVILTLYGKYGKKDDVLRIWE 144
L L Y +K D+ RI E
Sbjct: 264 SETYLALLNAYAEKGDINRIEE 285
>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
Length = 879
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 5/210 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ GL T V Y+ ++ + K + + D+L E + + + Y + A+
Sbjct: 300 VEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQ 359
Query: 61 ASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + E ++++ ME D + +D +Y ++ +GY + +K L + ++ +E +
Sbjct: 360 SGNMERAEELVREMEEDGIDAPID--VYHSMMHGYTIIQNENKCLVVFERLKECGFKPSI 417
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y +L LY K GK L I E+ +K N Y +I+ + L D +A IFE
Sbjct: 418 IS-YGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFE 476
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E L D I N LI+ +C+ G +++A
Sbjct: 477 EMLRSGLQPDRAIYNLLIEAFCKMGNMDRA 506
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 108/232 (46%), Gaps = 7/232 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T + YN+++ + ++ S++ +M GIT + +TY + YA + D
Sbjct: 548 MRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGD 607
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T ++ + + LD IY T+ K G + ALA+ ++ Q K + Y
Sbjct: 608 IGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ-KIPRNTFIY 665
Query: 124 NVILTLYGKYG---KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
N+++ + + G + +D+++ ++ + V + Y + I++ K D++ AEK+ EE
Sbjct: 666 NILIDGWARRGDVWEAEDLMK--QMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM 723
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
L + + LI + R L ++A KL G + S++ L T
Sbjct: 724 VDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVT 775
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +IS K++D +SA+ +F+E +++ + I + +I +C++G +E+AE LV +
Sbjct: 315 YSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREME 374
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL--VKWKPSVESLAACLDYF 274
G + + ++ + GY ++ K L ++ L +KPS+ S L+ +
Sbjct: 375 EDGIDAPIDVYHSMMHGY-------TIIQNENKCLVVFERLKECGFKPSIISYGCLLNLY 427
Query: 275 KDEGDIGGA 283
G + A
Sbjct: 428 VKIGKVAKA 436
>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
Length = 901
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 5/210 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ GL T V Y+ ++ + K + + D+L E + + + Y + A+
Sbjct: 322 VEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQ 381
Query: 61 ASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + E ++++ ME D + +D +Y ++ +GY + +K L + ++ +E +
Sbjct: 382 SGNMERAEELVREMEEDGIDAPID--VYHSMMHGYTIIQNENKCLVVFERLKECGFKPSI 439
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y +L LY K GK L I E+ +K N Y +I+ + L D +A IFE
Sbjct: 440 IS-YGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFE 498
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E L D I N LI+ +C+ G +++A
Sbjct: 499 EMLRSGLQPDRAIYNLLIEAFCKMGNMDRA 528
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 108/232 (46%), Gaps = 7/232 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T + YN+++ + ++ S++ +M GIT + +TY + YA + D
Sbjct: 570 MRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGD 629
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T ++ + + LD IY T+ K G + ALA+ ++ Q K + Y
Sbjct: 630 IGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ-KIPRNTFIY 687
Query: 124 NVILTLYGKYG---KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
N+++ + + G + +D+++ ++ + V + Y + I++ K D++ AEK+ EE
Sbjct: 688 NILIDGWARRGDVWEAEDLMK--QMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM 745
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
L + + LI + R L ++A KL G + S++ L T
Sbjct: 746 VDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVT 797
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +IS K++D +SA+ +F+E +++ + I + +I +C++G +E+AE LV +
Sbjct: 337 YSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREME 396
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL--VKWKPSVESLAACLDYF 274
G + + ++ + GY ++ K L ++ L +KPS+ S L+ +
Sbjct: 397 EDGIDAPIDVYHSMMHGY-------TIIQNENKCLVVFERLKECGFKPSIISYGCLLNLY 449
Query: 275 KDEGDIGGA 283
G + A
Sbjct: 450 VKIGKVAKA 458
>gi|449533905|ref|XP_004173911.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like, partial [Cucumis sativus]
Length = 299
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T YN +L + +G E+ + M+ + + D +Y T LSAY +
Sbjct: 55 FEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVN 114
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKG 116
ASD EG + ++ D PNV V Y T+ GY K+ L+K M+K+ EE ++ G
Sbjct: 115 ASDMEGAEIFFRRLKQDGFRPNV----VTYGTLIKGYAKINNLEK---MIKRYEEMKVNG 167
Query: 117 AKVNSAYNVILTLYGKYGKKDD 138
+VN ++ T+ YGK D
Sbjct: 168 IRVNQT--ILTTIMDAYGKNKD 187
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 16/299 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G Y +++ +G + L H M +G+ + TY ++ +
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M PN+ V Y + GY +G D AML + +G N
Sbjct: 406 IKYAFVVLNLMGRNGCSPNI----VTYNEMIKGYCILG--DPKKAMLVMNNMLQRGHSAN 459
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN I+ Y G LRI +L + K Y +I K+ +ESA +F
Sbjct: 460 LVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN 519
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E LC + LID YC++ L+ A +L+ H K G +V+++ L G + +
Sbjct: 520 EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQN 579
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A E + KV+ P+V + A +D G A + ++G +P
Sbjct: 580 NFSGA-EELCKVMIEEGIF----PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLP 633
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 127/310 (40%), Gaps = 34/310 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M G+ ++YN+++ K GN +++M ++ E+ ++ D +TY + + +
Sbjct: 204 HRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRK 263
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + ++ M +PN V Y+T+ NG G +++A +++ E I
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNT----VTYSTLINGLCDSGRVNEAFDLIR---EMILHGI 316
Query: 119 VNSAYNVI--LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ +A+ + G +D R++ ++ K + Y +IS L L+ A
Sbjct: 317 LPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIG 376
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F + +T N LI++ N ++ A ++N G ++ ++ + GY
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436
Query: 236 QNSQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
KA+ M + L Y T++K + D G+ A +
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG-------------YCDSGNTTSALRIL 483
Query: 288 ELLNDKGFIP 297
+L+ D G P
Sbjct: 484 DLMRDGGCKP 493
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 115/297 (38%), Gaps = 19/297 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + G + Y+S+++ + G E+ ++L E+E +G+ D TY + AY +
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684
Query: 63 DHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
E L M++A L W + + L D+ LA L +
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTL-WTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTT 743
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+ + + K + D L +V+V N ++S+L A ++
Sbjct: 744 DQDAVSVMSAKLAELDPGL--------SVQVQN----ALVSNLSTAGRWFEANELLGSMI 791
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
SQ LC D N L+ R ++ A + H +G E+H+ + L Q+H
Sbjct: 792 SQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICAL---CQLH 848
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ EA ++ + W P A +D +G F+ ++ + ++P+
Sbjct: 849 RRKEA--RITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 903
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M G + V YN+++K Y +GN ++ M + G D ++Y + +
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S E + M D + + V Y + +GY K LD A ++L+ + G + N
Sbjct: 508 ISKMESAFGLFNEM-VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS--GCRPN 564
Query: 121 -SAYNVI---LTLYGKYGKKDDVLRIW-----------------------------ELYK 147
YNV+ LT + +++ ++ E++
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624
Query: 148 KAVK--VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
K ++ L N Y ++I +L + +E AE +F E E L D +I+ Y +G
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684
Query: 204 LLEKAENLV 212
+E A N +
Sbjct: 685 KVEHAFNFL 693
>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
Length = 332
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 5/205 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V YNS++ K G + + M + G+ D TY T L YA
Sbjct: 105 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYAT 164
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + + +++ + Y K +++A+ + K +Q G N
Sbjct: 165 KGALVEMHGLLDLMVRN-GIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ--GLNPN 221
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D + +E + + ++ + Y ++I SL D E AE++F
Sbjct: 222 AVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFL 281
Query: 179 EWESQALCYDTRIPNFLIDVYCRNG 203
E + +C T N +ID +C+ G
Sbjct: 282 EMLDRGICLSTIFFNSIIDSHCKEG 306
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 38/232 (16%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y++++ ++K G+ +K S +EM + I+ + TY + ++A A + ++LT
Sbjct: 12 VVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLT 71
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M V D + Y ++ +G+ G +A+ LKK V + YN ++ K
Sbjct: 72 TM-VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVT-YNSLMDYLCK 129
Query: 133 YGKKDDVLRIWE-LYKKAVK-------VLNNGY-----------------RN-------- 159
G+ + +I++ + K+ +K L GY RN
Sbjct: 130 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 189
Query: 160 ---VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
++ + K + +E A +F + Q L + +IDV C++G +E A
Sbjct: 190 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDA 241
>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
Japonica Group]
gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
Length = 551
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 123/270 (45%), Gaps = 17/270 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ L+ Y+S++ Y + GN + + E NGI + +TY ++ +
Sbjct: 236 FEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCK 295
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + ++T M+ V ++ +++ T+ +GY + ++DKAL + E+ G +++
Sbjct: 296 IGQMEAAEMLVTDMQVR-GVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKM--GIELD 352
Query: 121 S-AYNVILTLYGKYGKKDD---VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN + + + D+ +LRI + +K V+ + Y +IS D+ A ++
Sbjct: 353 VYTYNTLACGLRRANRMDEAKNLLRI--MIEKGVRPNHVSYTTLISIHCNEGDMVEARRL 410
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E N ++D Y + G + +AE N + KG + S+ L G+
Sbjct: 411 FREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCV 470
Query: 237 NSQIHKAV---EAMKKV-----LAAYQTLV 258
N ++ A+ E MK+ L AY L+
Sbjct: 471 NGKVDVALRLFEEMKQRGSKPNLVAYTALI 500
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 133/315 (42%), Gaps = 51/315 (16%)
Query: 23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME---ADPN 79
Y K+G L+ EM +G+ + Y + L AY D + + ++L +ME +P
Sbjct: 153 YCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPT 212
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139
V Y + +G + K A+ E++K ++ ++ Y + +V
Sbjct: 213 VG----TYTILVDGLSAARDITKVEAVF----EEMKSKNLSGDVYFYSSVINAYCRAGNV 264
Query: 140 LRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
R E++ + V NG Y +I+ K+ +E+AE + + + + + + +
Sbjct: 265 RRASEVFDECV---GNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVF 321
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL- 251
N +ID YCR +++KA + + G E+ V ++ LA G R+ +++ +A ++ ++
Sbjct: 322 NTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIE 381
Query: 252 -------AAYQTLVKW----------------------KPSVESLAACLDYFKDEGDIGG 282
+Y TL+ +PS+ + +D + +G I
Sbjct: 382 KGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIRE 441
Query: 283 AENFIELLNDKGFIP 297
AE F + KG +P
Sbjct: 442 AERFKNEMEKKGLVP 456
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 14/303 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M+DL ++ YN+M+ + + ++ L EM+E G +R TY L Y
Sbjct: 133 FQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGK 192
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
H+ ++L MEA PN+ V Y + Y + GL D+A A LKKS
Sbjct: 193 GGMHKEASELLVEMEAAGISPNI----VTYNELIAAYARAGLCDEA-AALKKSLLSKGLC 247
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL-KLDDLESAEKI 176
Y +++ + + + + L + +K N N++ + +++ L+ K+
Sbjct: 248 PDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKV 307
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+ + + D N L+ + G+L + N+ K G V ++ L Y +
Sbjct: 308 FKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGR 367
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ +V+ K +L +P+V + AA + EG E + + + G
Sbjct: 368 CGYVDYSVDIYKGLLR-----TGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQ 422
Query: 297 PTD 299
+D
Sbjct: 423 LSD 425
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 9/215 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGN-FEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+ M+ G V YN ML LY K G+ ++++ SL EM++ I+ D YTY T ++A
Sbjct: 97 FETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACI 156
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S + ++ M+ + + V Y + + YGK G+ +A +L E + G
Sbjct: 157 QNSHCQEALRLFQEMK-EAGCCPNRVTYNALLDVYGKGGMHKEASELL--VEMEAAGISP 213
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N YN ++ Y + G D+ + + L K + Y +IS+ + + E A + F
Sbjct: 214 NIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETF 273
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
E + N LID+Y G +EK ++++
Sbjct: 274 TEMRKTNCTPNIVTYNILIDIY---GRMEKLDDMM 305
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 58/298 (19%), Positives = 114/298 (38%), Gaps = 40/298 (13%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL T + +++ + G +++ + + EM E G+ + + +YA++ +
Sbjct: 385 GLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQL 444
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
K + +E L ++ T Y K + ++A L +
Sbjct: 445 RKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQ------------------ 486
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
LY D +KV N +IS K +E A K+ EE L
Sbjct: 487 -LYDNGHSPD------------IKVFNA----MISMCAKRGWIERAVKLLEEIRKAQLKP 529
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D N L+ +Y R G+ KAE +++ + G+ ++ ++ L Y ++ ++ A
Sbjct: 530 DGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVF 589
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
++AA + +P + + + G A + IE + + G PT + K L
Sbjct: 590 GDMVAA-----RVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKAL 642
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++++R L V YN ++ +Y + G + K + +M EM G + TY T L +Y
Sbjct: 519 LEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTK 578
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
+ ++ M A V D + T+ Y +GL +AL++++ E
Sbjct: 579 HGRMDDAARVFGDMVA-ARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEH 630
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 101/244 (41%), Gaps = 38/244 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR G+ V+ S++ Y G+ S + EM+ GI TY +S Y
Sbjct: 274 FENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGK 333
Query: 61 ASDHEGIDKILTMMEADPNV-ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D + D + EA + L+ +IY+ + + + + G +D+A ++++ EE A +
Sbjct: 334 TNDAQSADNLFK--EAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPI 391
Query: 120 NS----------------------------------AYNVILTLYGKYGKKDDVLRIW-E 144
+ +Y ++ LY K GK + I E
Sbjct: 392 DVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKE 451
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ +K N Y +I+ + L D +A IFE+ L D I N L++ +C+ G
Sbjct: 452 MESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGN 511
Query: 205 LEKA 208
+++A
Sbjct: 512 MDRA 515
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/335 (18%), Positives = 133/335 (39%), Gaps = 47/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ G T + Y ++ LY K G K ++ EME +GI ++ TY ++ +
Sbjct: 414 FERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIH 473
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D I M + D IY + + K+G +D+A+ + ++ +++ + N
Sbjct: 474 LHDFANAFSIFEDM-IKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKE-RMQPSN 531
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-------------------------KAVKVLN- 154
+ I+ + G +L + KAV VL+
Sbjct: 532 RTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDK 591
Query: 155 ----------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ Y ++ D+ A + F + + L D I L+ C++G
Sbjct: 592 MSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGR 651
Query: 205 LEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
++ A L ++ ++I ++ Y L G+ + + +A + +K++ P
Sbjct: 652 MQSA--LAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKED-----GIPP 704
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ + + ++ GD+ AEN I+ + D G P
Sbjct: 705 NIHTFTSYINACCKAGDMQRAENVIQEMADVGLKP 739
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
+ R T +YN ++ + + G+ + L+ +M+E+GI + +T+ + ++A A D + +
Sbjct: 667 IPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAE 726
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN---SAYNV 125
++ M AD + + + T+ G+ +V L D+AL K E++K A + +AY+
Sbjct: 727 NVIQEM-ADVGLKPNVKTFTTLIKGWARVSLPDRAL----KCFEEMKSAGLKPDEAAYHC 781
Query: 126 ILT 128
++T
Sbjct: 782 LVT 784
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
E+ + +++ Y +IS K +D +SA+ +F+E +++ + I + +I +C++G
Sbjct: 311 EMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSG 370
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL--VKWK 261
+++AE LV + G + + ++ + GY V+ KK L ++ L +K
Sbjct: 371 NMDRAEELVREMEEDGIDAPIDVYHSMMHGY-------TVVQDEKKCLIVFERLKECGFK 423
Query: 262 PSVESLAACLDYFKDEGDIGGA 283
P++ S ++ + G + A
Sbjct: 424 PTIISYGCLINLYVKVGKVPKA 445
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 15/228 (6%)
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK- 132
ME P V + W I + +G+ K L +ALA +K E + A YNV++ K
Sbjct: 1 MECQPTV-VTWTI---IIDGFCKANQLKQALACFEKMREFV--APNERTYNVVVNGLCKA 54
Query: 133 --YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ-ALCYDT 189
K +VL+ K L Y VI+ K +++ A +I E ++ + D
Sbjct: 55 RLTSKAYEVLKEMRDGKSVAPDLVT-YSTVINGFCKQGEMDRACEILREMVTRDGIAPDV 113
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
++D CR+G +++A +V KLKG E ++ L TG+ ++ +A++ K+
Sbjct: 114 VTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKE 173
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+L T WKP V + A +D F G++ A + ++ + +P
Sbjct: 174 IL----TSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVP 217
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 10/241 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+A V Y S++ + G ++ ++ EM+ G+ D++T+ ++ + +A +
Sbjct: 108 GIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEA 167
Query: 68 DK----ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
K ILT P+V V Y + +G+ K G L+KA+ ML E + K Y
Sbjct: 168 LKLYKEILTSSSWKPDV----VTYTALIDGFCKSGNLEKAMKMLGVMEGR-KCVPNVVTY 222
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWES 182
+ +L K G D L ++ V N Y +I L +++A + +E +
Sbjct: 223 SSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA 282
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
DT N L+D YCR G +E+A+ L K ++ L G+ S++ +
Sbjct: 283 TCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEE 342
Query: 243 A 243
A
Sbjct: 343 A 343
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 4/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M TV YN++L Y + G E+ L EM DR TY + + +
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCN 336
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
AS E +L M+ + D V Y+ V GY + +A ++ E + N
Sbjct: 337 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQ--EMIARNVAPN 394
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y+ ++ K G+ D + + + + K V+ + +VI +L +L D++ A K+
Sbjct: 395 AVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLV 454
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ L L++ + R G +E A L
Sbjct: 455 AMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL 487
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 111/248 (44%), Gaps = 17/248 (6%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
T V + ++ + K ++ + +M E + + TY ++ A ++L
Sbjct: 6 TVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEVL 64
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
M +VA D V Y+TV NG+ K G +D+A +L++ + A Y ++
Sbjct: 65 KEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLC 124
Query: 132 KYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE------WESQA 184
+ GK D + E+ K V+ + +I+ ++ A K+++E W+
Sbjct: 125 RDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDV 184
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI--HVKSWYYLATGYRQNSQIHK 242
+ Y LID +C++G LEKA ++ ++GR+ +V ++ L G + + +
Sbjct: 185 VTYTA-----LIDGFCKSGNLEKAMKMLG--VMEGRKCVPNVVTYSSLLHGLCKAGDLDQ 237
Query: 243 AVEAMKKV 250
A++ +++
Sbjct: 238 ALDLFRRM 245
>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
Length = 521
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 124/304 (40%), Gaps = 50/304 (16%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G++ + YNS+L Y + + ++ ++ ME GI TY + + + A D +
Sbjct: 161 GVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKV 220
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ + M+A+ NV D +Y V N Y + G + +A AKV
Sbjct: 221 EALFNEMKAN-NVVGDVYLYTAVINAYCRAGNMRRA-------------AKV-------- 258
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+ E V+ Y +I K+ +E+AE + + + Q +
Sbjct: 259 --------------LDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGL 304
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG------------YR 235
+ I N +ID YCR G+++ A + + G E+++ ++ LA G Y
Sbjct: 305 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYT 364
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
IH M + ++ + + PSV + + + + +G I AE F + + K
Sbjct: 365 TLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKK 424
Query: 294 GFIP 297
GF+P
Sbjct: 425 GFVP 428
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 29/249 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + G+ T Y ++ + K+++L +EM+ N + D Y Y ++AY
Sbjct: 189 LEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCR 248
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + K+L + V + Y + G+ K+G ++ A +L ++ Q +G +N
Sbjct: 249 AGNMRRAAKVLDECVGN-GVEPNERTYGVLIKGFCKIGQMEAAEMLL--ADMQGQGVGLN 305
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N ++ Y + G DD L+I +K LN N ++
Sbjct: 306 QIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLAC---------------- 349
Query: 180 WESQALCYDTRIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
LC +PN+ LI ++C++G + +A L KG V ++ + GY
Sbjct: 350 ----GLCRMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGY 405
Query: 235 RQNSQIHKA 243
+ +I +A
Sbjct: 406 AKKGRIREA 414
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 119/259 (45%), Gaps = 12/259 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G++ + YN ++ Y K G ++ + L EM G+ YTY + L+A+
Sbjct: 31 FEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCK 90
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E ++ TM A+ D V Y+T+ +G K G + +AL ML + +G
Sbjct: 91 ETKMKEAMELFKTM--AEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIE-RGCSA 147
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIW----ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
N+ AYN ++ K +++ R + E+ K N Y ++S L ++ + A+
Sbjct: 148 NTVAYNALIN---GLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAK 204
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ F+ S+ D N L+D + G ++A L KG ++ + G
Sbjct: 205 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 264
Query: 235 RQNSQIHKAVEAMKKVLAA 253
+ S + +A E KK++A+
Sbjct: 265 ARKSNMDEAEEMFKKMVAS 283
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 122/302 (40%), Gaps = 16/302 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
KM + G + TV YN+++ K N E+ L+ EM G D TY T LS
Sbjct: 137 FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCR 196
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ M + + D V Y + + K G D+A+ + K + KG +
Sbjct: 197 MGKVSEAKQFFDSMPSR-GYSPDVVAYNGLLDALYKEGKTDEAMKLFK--DVIAKGYMPD 253
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNNG--YRNVISSLLKLDDLESAEK 175
+ YN IL +K ++ E++KK V NG Y V+S + ++ A K
Sbjct: 254 TVTYNSILL---GLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHK 310
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ EE D N L+D C+ L++KA L + G + S+ + G
Sbjct: 311 VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLC 370
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ +++H A +VL K P V + +D G + A++ ++ + G
Sbjct: 371 KTNKVHDA-----RVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGC 425
Query: 296 IP 297
P
Sbjct: 426 AP 427
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 112/254 (44%), Gaps = 12/254 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR+ R T + +LK + K G L +M +NGI+ D Y + YA
Sbjct: 1 MRECSPNRYT--FRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGR 58
Query: 64 HEGIDKILTMMEADPNVALDWVIYA--TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN- 120
+D+ + E +V L+ IY ++ N + K + +A+ + K E KG + +
Sbjct: 59 ---VDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAE--KGFEPDV 113
Query: 121 SAYNVILTLYGKYGKKDDVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y+ I++ K GK + L + ++ ++ Y +I+ L K +++E A K+ E
Sbjct: 114 VTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLE 173
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S+ D N ++ CR G + +A+ + +G V ++ L +
Sbjct: 174 EMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEG 233
Query: 239 QIHKAVEAMKKVLA 252
+ +A++ K V+A
Sbjct: 234 KTDEAMKLFKDVIA 247
>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 675
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 111/254 (43%), Gaps = 5/254 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M D G+A Y+ ++ Y + G +E L+ EME +G+ Y + L+ + D
Sbjct: 329 LDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRD 388
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL-AMLKKSEEQIKGAKV 119
D + +L M A V D Y + + +GK L A+ A + EE I+ V
Sbjct: 389 RGDWQKAFAVLREMHAS-GVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVV 447
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL-KLDDLESAEKIFE 178
+N ++ + K G+ D + ++E +++ N++ +LL + + E +
Sbjct: 448 T--WNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLS 505
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + Q L + L+DVY R+G ++A + K G + ++ L Y Q
Sbjct: 506 EMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRG 565
Query: 239 QIHKAVEAMKKVLA 252
A+ +K + A
Sbjct: 566 LADHALNVVKAMRA 579
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 50/268 (18%), Positives = 112/268 (41%), Gaps = 12/268 (4%)
Query: 35 LMHEMEENGITYDRYTYCTRLSAY---ADASDHEGIDKILTMMEADPNVALDWVIYATVG 91
L+ + E+G D +Y L++ D D ++++L + + + D +++ +
Sbjct: 184 LLALIREHGFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLR-ESRLEPDAPLFSDLI 242
Query: 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK--KDDVLRIWELYKKA 149
+ + + L D AL +L S + I ++A +++ G G+ + + L +
Sbjct: 243 SAFARAALPDAALDLLA-SAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGE 301
Query: 150 VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
+K Y ++ +K+ L++AE++ +E + D + L+D Y R G E A
Sbjct: 302 IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESAR 361
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA 269
L+ + G + + + G+R KA ++++ A+ +P
Sbjct: 362 ILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHAS-----GVQPDRHFYNV 416
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIP 297
+D F +G A + + ++G P
Sbjct: 417 MIDTFGKYNCLGHAMDAFNRMREEGIEP 444
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 8/255 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM+ G+ + Y ++L+ +F+ L ME+NG+ D + Y A
Sbjct: 405 LTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 464
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E + VAL V Y T+ +G+ K G D A ++++ ++ G +
Sbjct: 465 AGRAEEAYSFI----VRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDE--GCTPD 518
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y+V+L K + ++ L I ++ + +K Y +I +L+ + A++++
Sbjct: 519 SYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYN 578
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S I+ YC+ G LE AE+L+ + +G V ++ L G
Sbjct: 579 EMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMG 638
Query: 239 QIHKAVEAMKKVLAA 253
I +A +K+++ A
Sbjct: 639 YIDRAFSTLKRMVGA 653
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 116/292 (39%), Gaps = 46/292 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + + YN+M+ Y K G + ME+NG D +TY T + D E
Sbjct: 203 GVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAE 262
Query: 68 DKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+ + ++ P V V + + NGY D AL M K ++S +
Sbjct: 263 ELLNNAVKEGFTPTV----VTFTNLINGYCMAEKFDDALRM--------KNKMMSSKCKL 310
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
L ++GK +I+SL+K D L+ A+++ E + L
Sbjct: 311 DLQVFGK---------------------------LINSLIKKDRLKEAKELLNEISANGL 343
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ +ID YC++G ++ A ++ + G + + ++ L G ++ ++HKA+
Sbjct: 344 VPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMA 403
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ K+ P+V + L DE D A E++ G P
Sbjct: 404 LLTKMQKD-----GIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 450
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 114/315 (36%), Gaps = 80/315 (25%)
Query: 8 GLARTTVVYNSMLKLYYK-----------------------------------TGNFEKL 32
GL TV YN+M+K Y K TG K
Sbjct: 63 GLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 122
Query: 33 DSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD---PNV-ALDWVIYA 88
L M G + Y+Y + DA + MM+ D PNV A ++I
Sbjct: 123 CWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLI-- 180
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK 148
+G K G + A + + V + YN ++ Y K G+ +D L+I EL +K
Sbjct: 181 ---SGLCKSGRVGDARLLFDAMPQNGVVPSVMT-YNAMIVGYSKLGRMNDALKIKELMEK 236
Query: 149 ------------------------AVKVLNNG-----------YRNVISSLLKLDDLESA 173
A ++LNN + N+I+ + + A
Sbjct: 237 NGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDA 296
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++ + S D ++ LI+ + L++A+ L+N G +V ++ + G
Sbjct: 297 LRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDG 356
Query: 234 YRQNSQIHKAVEAMK 248
Y ++ ++ A+E +K
Sbjct: 357 YCKSGKVDIALEVLK 371
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 8/255 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM++ G+ + Y ++++ K F+ L ME+NG+T D Y A
Sbjct: 427 ITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCK 486
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E L V L V Y ++ +G+ K G D A +++K + G K +
Sbjct: 487 SGRAEEAYSFLV----RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNE--GCKAD 540
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y+V+L K K ++ L I ++ VK Y +IS ++K + A+ +F
Sbjct: 541 SYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFN 600
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S I YC+ G +E+AE+L+ + G V ++ G
Sbjct: 601 EMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMG 660
Query: 239 QIHKAVEAMKKVLAA 253
+ +A +K+++ A
Sbjct: 661 YMDRAFSTLKRMIDA 675
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 106/251 (42%), Gaps = 21/251 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ V Y ++ K G + S+ +EM +G TY +S+Y
Sbjct: 564 LDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCK 623
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + ++ ME D VA D V Y NG G +G +D+A + LK+ + + N
Sbjct: 624 IGQIEEAEHLIGEMERD-GVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMID--ASCEPN 680
Query: 121 S-AYNVILTLYGKYGKKD-------------DVLRIWELYKKAVKVLNNG----YRNVIS 162
Y ++L + K D ++ +W+L ++ VK N Y ++I+
Sbjct: 681 YWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIA 740
Query: 163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
K LE A +F+ + + + I LI C L KA + V G +
Sbjct: 741 GFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQP 800
Query: 223 HVKSWYYLATG 233
H++S++YL G
Sbjct: 801 HLESYHYLIVG 811
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 34/264 (12%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ++K K G ++ EM G+ +TY + Y + + I +ME
Sbjct: 198 YTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALME 257
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL------ 129
+ DW + YG G +K ++EE + A V ++T
Sbjct: 258 RNGCNPDDWTYNILI---YGLCG--EKP----DEAEELLNDAIVRGFTPTVITFTNIING 308
Query: 130 YGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
Y K + DD LR+ + K+ Y +I+ L+K + A++ E + L +
Sbjct: 309 YCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPN 368
Query: 189 TRIPNFLIDVYCRNGLLEKA---ENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKA 243
I +ID YC+ G + A L+ HE + +W Y L G Q+ ++HKA
Sbjct: 369 VVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRP-----NAWTYSSLIYGLIQDQKLHKA 423
Query: 244 VEAMKKV--------LAAYQTLVK 259
+ + K+ + Y TL++
Sbjct: 424 MALITKMQEDGITPGVITYTTLIQ 447
>gi|297847014|ref|XP_002891388.1| hypothetical protein ARALYDRAFT_336905 [Arabidopsis lyrata subsp.
lyrata]
gi|297337230|gb|EFH67647.1| hypothetical protein ARALYDRAFT_336905 [Arabidopsis lyrata subsp.
lyrata]
Length = 310
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 35/182 (19%)
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKV-GLLDKALAMLKKSEEQIKGAKVNSAYN 124
G+++ E+ P D+ +Y + Y K LDKA A +K + + S +N
Sbjct: 104 GLEEAEKFFESIPENMRDYSVYDNLLRSYTKSEKTLDKAEATFEKMRD-LGFLLKPSPFN 162
Query: 125 VILTLYGKYGKKDDVLR---------------------------------IWELYKKAVK 151
+++LY KKD V + +W KK K
Sbjct: 163 SMISLYRHLKKKDMVKKLEREMMENDVRFDSHKELNVLTILSTCKDSMYSVWNYIKKRGK 222
Query: 152 VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ + YR+ IS LLKLDD++ AEK++EEW+ D IP+ LI +C G K E L
Sbjct: 223 MTDEEYRSRISYLLKLDDVQGAEKLYEEWKPVGPKLDMSIPSLLISRFCEEGNGSKVEEL 282
Query: 212 VN 213
V+
Sbjct: 283 VD 284
>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 484
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAAKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 LKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 133/309 (43%), Gaps = 10/309 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G V Y +++ Y G +K+ L+ EM+ G+ + YTY + +
Sbjct: 133 LMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCK 192
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE--EQIKGAK 118
+ +K+L M V D VIY T+ +G+ K+G A + + E E + +
Sbjct: 193 SGKVVEGEKVLREM-MKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSI 251
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
SA L+ GK + D + E+ KK + Y +I KL +++ A +
Sbjct: 252 AFSALICGLSGSGKVVEADKLFN--EMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHN 309
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L + L D C++G L+ A L++ KG ++++ ++ + G +
Sbjct: 310 QMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAG 369
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
I +AV+ M+++ A P + +D + G++ A + + D+G PT
Sbjct: 370 NILQAVKLMEEMKEA-----GLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPT 424
Query: 299 DLQDKLLDN 307
+ +L N
Sbjct: 425 VVTFNVLMN 433
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 132/304 (43%), Gaps = 20/304 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ GL Y+S++ L K+G + + ++ EM + G+ D Y T + +
Sbjct: 168 VKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCK 227
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVG--NGYGKVGLLDKAL-AMLKKSEEQIKGA 117
+ + K+ + MEA V A + +G GKV DK M+KK E +
Sbjct: 228 LGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDE-- 285
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNVISSLLKLDDLESA 173
Y ++ Y K G ++ + + L+ + V++ Y + L K +L++A
Sbjct: 286 ---VTYTALIDGYCKLG---EMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTA 339
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++ E + L + N +++ C+ G + +A L+ K G ++ L
Sbjct: 340 NELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDA 399
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
Y + ++ KA E ++++L +P+V + ++ G + E ++ + +K
Sbjct: 400 YYKTGEMVKARELLREMLDR-----GLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEK 454
Query: 294 GFIP 297
G +P
Sbjct: 455 GIMP 458
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 94/250 (37%), Gaps = 40/250 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M GL YN+++ K GN + LM EM+E G+ D TY T + AY
Sbjct: 343 LHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYK 402
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L M D + V + + NG G L+ +LK E KG N
Sbjct: 403 TGEMVKARELLREM-LDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLE--KGIMPN 459
Query: 121 SA-YNVILTLYG--------------------------------KYGKKDDVLRIWELYK 147
+A YN I+ Y + K ++ W L+K
Sbjct: 460 AATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHK 519
Query: 148 KAVK----VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
+ V+ + + Y +I K L A ++FEE + L I N +D+ G
Sbjct: 520 EMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEG 579
Query: 204 LLEKAENLVN 213
+E L +
Sbjct: 580 NMETTLELCD 589
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
N Y +SS K D L K+F E+ +C++T N L++ R G + +A +L+
Sbjct: 78 NLYLTCLSS--KRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMR 135
Query: 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF 274
+ KG V S+ + GY ++ K V+ +K++ L KP++ + ++ +
Sbjct: 136 MEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM-----QLKGLKPNLYTYSSIILLL 190
Query: 275 KDEGDIGGAENFIELLNDKGFIP 297
G + E + + +G P
Sbjct: 191 CKSGKVVEGEKVLREMMKRGVFP 213
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 127/301 (42%), Gaps = 17/301 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M D G+ TV +NS++ K G FE+ SL+ M E R + CT + +
Sbjct: 33 LHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNC---RPSCCTYNTLISG 89
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ +D+ T+++ D V Y+ + +G K G +D+A ++K E G
Sbjct: 90 LCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVK--EMSGNGCT 147
Query: 119 VN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
N YN ++ K K + + E + V + Y ++ L K L+ A K+
Sbjct: 148 PNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKM 207
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E + L++ CR G +++A ++ K ++ L GY +
Sbjct: 208 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK 267
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+S+ +A +KV+ ++ P ++ A +D + EG + N E + +G +
Sbjct: 268 SSRTKEA----QKVVDG----IRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCV 319
Query: 297 P 297
P
Sbjct: 320 P 320
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 108/249 (43%), Gaps = 10/249 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G V Y+ + K G ++ L+ EM NG T + TY T + AS E
Sbjct: 110 GFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKA 169
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA--YNV 125
++L + + V D V Y + +G K G LDKAL M+ E +K S Y
Sbjct: 170 YELLETLVSSGFVP-DVVTYTIIVDGLCKEGRLDKALKMV---EGMLKRGCTPSVITYTA 225
Query: 126 ILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ + G+ D+ I+ E+ K Y ++++ K + A+K+ +
Sbjct: 226 LMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTP 285
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ N L+D YC+ G L++ N+ +G ++K++ + G ++ ++ +A
Sbjct: 286 Y---IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAF 342
Query: 245 EAMKKVLAA 253
++ + +A
Sbjct: 343 PFLESMHSA 351
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 12/248 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ V YN+++ + K F+ ++ M + G+ D TY T +S +
Sbjct: 380 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 439
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +++ M + V Y T+ + K G L +AL ++ G + N
Sbjct: 440 TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH--GVEAN 497
Query: 121 SA-YNVILTLYGKYGKKDD---VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ YN+ + K G+ D+ +L + + V Y VI L K + L+ A K+
Sbjct: 498 TVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVS-----YTTVIIGLCKAEQLDRASKL 552
Query: 177 FEEWES-QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
E + + LC + N LID + + L++A L+ +G V ++ + T
Sbjct: 553 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLC 612
Query: 236 QNSQIHKA 243
+ ++ KA
Sbjct: 613 KLDKVDKA 620
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 114/259 (44%), Gaps = 9/259 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ +R+ + YN+++ K G ++ LM M +G+ + TY + + D
Sbjct: 452 EMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTY----NIFIDR 507
Query: 62 SDHEG-IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
EG +D+ +++ ++ + D V Y TV G K LD+A + L + +KG +
Sbjct: 508 LCKEGRLDEASSLL-SEMDTLRDEVSYTTVIIGLCKAEQLDRA-SKLAREMVAVKGLCIT 565
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S +N+++ + K + D+ L + EL ++ Y VI+ L KLD ++ A ++F+
Sbjct: 566 SHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFD 625
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + + LI C G ++A ++ EI L R
Sbjct: 626 EMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQG 685
Query: 239 QIHKAVEAMKKVLAAYQTL 257
+ +A E ++++ +L
Sbjct: 686 RGEEAAELLRRMTTKMDSL 704
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 8/255 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM+ G+ + Y ++L+ +F+ L ME+NG+ D + Y A
Sbjct: 520 LTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 579
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E + VAL V Y T+ +G+ K G D A ++++ ++ G +
Sbjct: 580 AGRAEEAYSFIV----RKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDE--GCTPD 633
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y+V+L K + ++ L I ++ + +K Y +I +L+ + A++++
Sbjct: 634 SYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYN 693
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S I+ YC+ G LE AE+L+ + +G V ++ L G
Sbjct: 694 EMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMG 753
Query: 239 QIHKAVEAMKKVLAA 253
I +A +K+++ A
Sbjct: 754 YIDRAFSTLKRMVGA 768
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 118/292 (40%), Gaps = 46/292 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + + YN+M+ Y K G + ME+NG D +TY T + D E
Sbjct: 318 GVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAE 377
Query: 68 DKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+ + ++ P V V + + NGY D AL M K ++S +
Sbjct: 378 ELLNNAVKEGFTPTV----VTFTNLINGYCMAEKFDDALRM--------KNKMMSSKCKL 425
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
L ++GK +I+SL+K D L+ A+++ E + L
Sbjct: 426 DLQVFGK---------------------------LINSLIKKDRLKEAKELLNEISANGL 458
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ +ID YC++G ++ A ++ + G + + ++ L G ++ ++HKA+
Sbjct: 459 VPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMA 518
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ K+ ++ P+V + L DE D A E++ G P
Sbjct: 519 LLTKM--QKDGII---PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 565
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 16/299 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G Y +++ +G + L H M +G+ + TY ++ +
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M PN+ V Y + GY +G D AML + +G N
Sbjct: 406 IKYAFVVLNLMGRNGCSPNI----VTYNEMIKGYCILG--DPKKAMLVMNNMLQRGHSAN 459
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN I+ Y G LRI +L + K Y +I K+ +ESA +F
Sbjct: 460 LVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN 519
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E LC + LID YC++ L+ A +L+ H K G +V+++ L G + +
Sbjct: 520 EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQN 579
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A E + KV+ P+V + A +D G A + ++G +P
Sbjct: 580 NFSGA-EELCKVMIEEGIF----PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLP 633
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 127/310 (40%), Gaps = 34/310 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M G+ ++YN+++ K GN +++M ++ E+ ++ D +TY + + +
Sbjct: 204 HRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRK 263
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + ++ M +PN V Y+T+ NG G +++A +++ E I
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNT----VTYSTLINGLCDSGRVNEAFDLIR---EMILHGI 316
Query: 119 VNSAYNVI--LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ +A+ + G +D R++ ++ K + Y +IS L L+ A
Sbjct: 317 LPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIG 376
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F + +T N LI++ N ++ A ++N G ++ ++ + GY
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436
Query: 236 QNSQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
KA+ M + L Y T++K + D G+ A +
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG-------------YCDSGNTTSALRIL 483
Query: 288 ELLNDKGFIP 297
+L+ D G P
Sbjct: 484 DLMRDGGCKP 493
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M G + V YN+++K Y +GN ++ M + G D ++Y + +
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S E + M D + + V Y + +GY K LD A ++L+ + G + N
Sbjct: 508 ISKMESAFGLFNEM-VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS--GCRPN 564
Query: 121 -SAYNVI---LTLYGKYGKKDDVLRIW-----------------------------ELYK 147
YNV+ LT + +++ ++ E++
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624
Query: 148 KAVK--VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
K ++ L N Y ++I +L + +E AE +F E E L D +I+ Y +G
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684
Query: 204 LLEKAENLV 212
+E A N +
Sbjct: 685 KVEHAFNFL 693
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 115/297 (38%), Gaps = 19/297 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + G + Y+S+++ + G E+ ++L E+E +G+ D TY + AY +
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684
Query: 63 DHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
E L M++A L W + + L D+ LA L +
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTL-WTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTT 743
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+ + + K + D L +V+V N ++S+L A ++
Sbjct: 744 DQDAVSVMSAKLAELDPGL--------SVQVQN----ALVSNLSTAGRWFEANELLGSMI 791
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
SQ LC D N L+ R ++ A + H +G E+H+ + L Q+H
Sbjct: 792 SQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICAL---CQLH 848
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ EA ++ + W P A +D +G F+ ++ + ++P+
Sbjct: 849 RRKEA--RITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 903
>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g54980, mitochondrial; Flags: Precursor
gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 851
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM G+ V YN+++ + + N + + + E G+ + YTY +
Sbjct: 466 LSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFR 525
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + +++ M + N+ ++ V+Y T+ NG KVG KA +L E+ +
Sbjct: 526 NHDEQNALEVVNHMTSS-NIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSC 584
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
+YN I+ + K G+ D + +E ++ NG Y ++++ L K + ++ A
Sbjct: 585 MSYNSIIDGFFKEGEMDSAVAAYE------EMCGNGISPNVITYTSLMNGLCKNNRMDQA 638
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++ +E +++ + D LID +C+ +E A L + +G + L +G
Sbjct: 639 LEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISG 698
Query: 234 YRQNSQIHKAVEAMKKVL 251
+R + A++ KK+L
Sbjct: 699 FRNLGNMVAALDLYKKML 716
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 107/248 (43%), Gaps = 9/248 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM G + +V ++ +++ + K G EK +ME G+T + T + +
Sbjct: 364 KMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQ 423
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
HE K+ E+ + + T+ + K G D+A +L K E + G V S
Sbjct: 424 KHEEALKLFD--ESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSY 481
Query: 123 YNVILTLYGKYGKKD-DVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
NV+L G +K+ D+ RI + +K +K N Y +I + D ++A ++
Sbjct: 482 NNVML---GHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNH 538
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA-ENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
S + + + +I+ C+ G KA E L N + K + S+ + G+ +
Sbjct: 539 MTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEG 598
Query: 239 QIHKAVEA 246
++ AV A
Sbjct: 599 EMDSAVAA 606
>gi|302768505|ref|XP_002967672.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
gi|300164410|gb|EFJ31019.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
Length = 717
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 125/282 (44%), Gaps = 39/282 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M++ G+ V YN+++ Y + G+ E+ ++ M E + + TY T + A+A
Sbjct: 453 VEDMKEAGVELDVVSYNTLINGYLEAGDNEQALAVFTRMREAKVPASKVTYGTLMKAFAR 512
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + K+ T M DP V +D V + T+ + Y + GL A L+ + + + N
Sbjct: 513 SGRTELVVKVFTQMALDPRVRVDVVAWNTLIDAYARAGLEQDATRALEDMKSR-GFSPTN 571
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN ++ YG+ ++ +W E+ ++V+ + R+ +
Sbjct: 572 ATYNTLVKTYGRSRNFGQLILLWKEINARSVEEDSAAVRD------------------KP 613
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN----------HEKLKGREIHVKSWYY 229
AL D + + LID + R G + A +V+ K K + ++V+ +
Sbjct: 614 LVVGALKPDAALLDSLIDSFVRGGYFQLALQVVDCMDRQGIHSGRAKAKYKRLYVELYAN 673
Query: 230 LATGY----RQNSQI---HKAVEAMKKVLAAYQTLVK--WKP 262
L T R+ S+ +AVEA K + +L K W+P
Sbjct: 674 LYTSRHTSERRKSKTAERRRAVEAFKFWVGLPNSLYKSEWRP 715
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 30/240 (12%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+ T+ +N M+KLY + +KL+ ++H M + + D T+ + ++A+ +
Sbjct: 257 MPAFGVKANTLTFNVMIKLYARVEKLDKLEQILHTMADADVDPDATTFNSLVAAFVGLGE 316
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-- 121
L++ E+ ++ + G G + + A+L K E AK
Sbjct: 317 -------LSLAES--------IVQSLRGEGEHQ----KRVPALLPKLREH--SAKFQPDV 355
Query: 122 -AYNVILTLYGKYGKKDDVLRI---WELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKI 176
Y ++ Y ++ + D +++ + K + + N + I + K+ L+ A I
Sbjct: 356 RTYTTLMKGYVQHNRVSDAMQLLVAMQQEKTSAAMPNEVTFTTAIRACAKMGLLDEARVI 415
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGL--LEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+E +Q + + N L+ C + +++A +V K G E+ V S+ L GY
Sbjct: 416 LQEMATQKVAANVVTYNTLLQGVCVFPITDMKRALEIVEDMKEAGVELDVVSYNTLINGY 475
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 134/302 (44%), Gaps = 15/302 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M + GL V YN ++ K G+ + L M E G+ D TY T ++ +
Sbjct: 222 MDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSS 281
Query: 61 ASDH-EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E + + MM+ + V D + + +V +G K+G + +AL + E G +
Sbjct: 282 VLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAEN--GCRC 339
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N A+N+++ + K + + E+ ++ + Y +I+ K+ +E AE
Sbjct: 340 NLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYL 399
Query: 178 EEWESQALCYDTR--IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
E Q + + IP L+ C G++ +A +L N E + ++ ++ + G
Sbjct: 400 SEMRHQGMEPEPVHYIP--LLKAMCDQGMMGQARDLFN-EMDRNCKLDAAAYSTMIHGAF 456
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ + A E +K ++ + L+ P + + ++ F GD+ AE ++ + GF
Sbjct: 457 KSGEKKIAEEFLKDMID--EGLI---PDAVTYSIPINMFAKSGDLAAAERVLKQMTASGF 511
Query: 296 IP 297
+P
Sbjct: 512 VP 513
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 132/305 (43%), Gaps = 20/305 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+D G+ V Y ++++ + + L++EM E+GI + Y L Y
Sbjct: 117 LRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCK 176
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + K+ M + D V+Y + + + G + KA ++ E +G + N
Sbjct: 177 TGRWESVGKVFEEMSGR-GIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTE--RGLEPN 233
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ K G + L + + + +K V+ Y +I+ L + +++ A + E
Sbjct: 234 VVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLE 293
Query: 179 EWESQALCYDTRI-P-----NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
E +TR+ P N +I C+ G + +A + G ++ ++ L
Sbjct: 294 EMMQG----ETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIG 349
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
G + ++ KA+E M ++ ++ +P + + ++ F + AE+++ +
Sbjct: 350 GLLRVHKVKKAMELMDEMASS-----GLQPDSFTYSILINGFCKMRQVERAESYLSEMRH 404
Query: 293 KGFIP 297
+G P
Sbjct: 405 QGMEP 409
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M D GL V Y+ + ++ K+G+ + ++ +M +G D + + + Y
Sbjct: 468 LKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGA 527
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E I ++ M A +VALD I +T+ G K L L + +I V
Sbjct: 528 KGDTEKILELTREMTAK-DVALDPKIISTIVTSLGASIEGQKLLQSLPGFDTEISKGDVI 586
Query: 121 SAYNVI 126
S ++V+
Sbjct: 587 SPHDVM 592
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y++M+ +K+G + + + +M + G+ D TY ++ +A + D +++L M
Sbjct: 448 YSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMT 507
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
A V D ++ ++ GYG G +K L + ++
Sbjct: 508 ASGFVP-DVAVFDSLIQGYGAKGDTEKILELTRE 540
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 13/248 (5%)
Query: 50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
+Y L A A + ++ M + P+V V Y + +GY + L+ A+ +L
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDV----VTYGIMVHGYCTLSELETAIKLL-- 308
Query: 110 SEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKL 167
SE +G ++N AY ++ L G+ D +R+ E VL+ + V+S +
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
DL +A F+E + + L D LI+ CR G L++AE ++ + KG ++ ++
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428
Query: 228 YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
L GY + ++ +A K++ T P+V + A D +GD+ A +
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVT-----PNVVTYTALSDGLCKQGDVCAANELL 483
Query: 288 ELLNDKGF 295
+ KG
Sbjct: 484 HEMCSKGL 491
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 106/237 (44%), Gaps = 9/237 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V+ +++ + + G+ + EM++ G+ D TY ++ A + +
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+++L ME D + +D V Y + +GY KVG + +A + K ++ +V
Sbjct: 410 ERVLQEME-DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQK----RVTPNVVTYT 464
Query: 128 TLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L K+ DV + E+ K +++ Y ++I+ L K +LE A + + +
Sbjct: 465 ALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEA 524
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L D +I C++ L++A +L+ KG + + ++ L G+ + ++
Sbjct: 525 GLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 581
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 13/232 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA- 61
+M+ GLA V Y +++ + G ++ + ++ EME+ G+ D TY + Y
Sbjct: 380 EMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVG 439
Query: 62 --SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ + + PNV V Y + +G K G + A +L E KG ++
Sbjct: 440 KMTEAFLVHNKMVQKRVTPNV----VTYTALSDGLCKQGDVCAANELLH--EMCSKGLEL 493
Query: 120 N-SAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N YN ++ K G + +R + ++ + +K Y +I +L + +L+ A +
Sbjct: 494 NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLL 553
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
+E + + N L++ +C +G +E + L+ E + + IH + Y
Sbjct: 554 QEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL--EWMLEKNIHPNTTTY 603
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 36/233 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M GL YNS++ K GN E+ M +M+E G+ D YTY T + A
Sbjct: 483 LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQ 542
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG-----------LLDKALAM--- 106
+ + + +L M D + V Y + NG+ G +L+K +
Sbjct: 543 SKELDRAHSLLQEM-LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTT 601
Query: 107 --------------LKKSEEQIKG------AKVNSAYNVILTLYGKYGKKDDVLRIW-EL 145
+K + E KG + YN+++ + K + L E+
Sbjct: 602 TYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEM 661
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
+K ++ + Y +I L K A ++FE+ L + + NF ID+
Sbjct: 662 IEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDL 714
>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 766
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 9/195 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K+R+ G + + YN ++ L+ N EK+ ++ +ME+ G+ D TY T +S +
Sbjct: 534 VEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGK 593
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
D E +++++ M E DP VA Y V Y VG L +AL + K + K
Sbjct: 594 HKDFESVERMMEQMREDELDPTVA----TYGAVIEAYCSVGELGEALKLFKDMGLRSKVN 649
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN+++ + K G L + E K K V+ Y + L + + E+ K+
Sbjct: 650 PNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQAETLLKL 709
Query: 177 FEEWESQALCYDTRI 191
+E Q+ C +I
Sbjct: 710 MDEMVEQS-CEPNQI 723
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 115 KGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
K +V+ A V + GK +V++ ++ + +I L K+ L+ AE
Sbjct: 341 KSRRVDEALQVFEQMCGKRTDDGNVIKADSIH----------FNTLIDGLCKVGRLKEAE 390
Query: 175 KIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++ + + C + N LID YCR G LE A+ +V+ K G + V + + G
Sbjct: 391 ELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGG 450
Query: 234 YRQNSQIHKAV--------EAMKKVLAAYQTLVKWKPSVESLAACLDYF 274
++ ++ AV E +K + Y TL+ S+ ++ + +F
Sbjct: 451 MCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWF 499
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 150/352 (42%), Gaps = 40/352 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M++ G+ V N+++ + +ME+ G+ + TY T + A
Sbjct: 429 VSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCS 488
Query: 61 ASDHEG----IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
S+ E DK+L + + D IY + +G +V A+ +++K E G
Sbjct: 489 LSNIEKAMHWFDKML-----EAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLRE--GG 541
Query: 117 AKVNS-AYNVILTLYGKYGKKDDVLRIWELY----KKAVKVLNNGYRNVISSLLKLDDLE 171
++ AYN+ L G + K++ +++E+ K+ +K + Y +IS K D E
Sbjct: 542 FSLDLLAYNM---LIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFE 598
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY-- 229
S E++ E+ L +I+ YC G L +A L L+ + ++ + Y
Sbjct: 599 SVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSK-VNPNTVIYNI 657
Query: 230 LATGYRQNSQIHKAV---EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
L + + +A+ E MK + +P+VE+ A K++ AE
Sbjct: 658 LINAFSKLGNFGQALSLKEEMKMKMV--------RPNVETYNALFKCLKEKNQ---AETL 706
Query: 287 IELLN---DKGFIPTDLQDKLLDNVQNGKSNLETLRE-LYGNSLAGNEETLS 334
++L++ ++ P + ++L +G L LR+ + G S+A E S
Sbjct: 707 LKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQGYSVASPTEKAS 758
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 26/263 (9%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+N++L + N ++++L+ +M+E I D T ++ + +D+ L + E
Sbjct: 297 FNALLSCLGRNMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKS---RRVDEALQVFE 353
Query: 76 A-------DPNVA-LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
D NV D + + T+ +G KVG L +A +L + + + + YN ++
Sbjct: 354 QMCGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKMEERCVPNTVTYNCLI 413
Query: 128 TLYGKYGK----KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
Y + GK K+ V R+ E K V N ++ + + L A F + E +
Sbjct: 414 DGYCRAGKLETAKEVVSRMKEDGIKPDVVTVN---TIVGGMCRHHGLNMAVLFFMDMEKE 470
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ + LI C +EKA + + G K +Y L +G Q + H A
Sbjct: 471 GVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRRDHDA 530
Query: 244 VEAMKKV--------LAAYQTLV 258
+ ++K+ L AY L+
Sbjct: 531 IRVVEKLREGGFSLDLLAYNMLI 553
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 8/255 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM+ G+ + Y ++L+ +F+ L ME+NG+ D + Y A
Sbjct: 520 LTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 579
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E + VAL V Y T+ +G+ K G D A ++++ ++ G +
Sbjct: 580 AGRAEEAYSFIV----RKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDE--GCTPD 633
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y+V+L K + ++ L I ++ + +K Y +I +L+ + A++++
Sbjct: 634 SYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYN 693
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S I+ YC+ G LE AE+L+ + +G V ++ L G
Sbjct: 694 EMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMG 753
Query: 239 QIHKAVEAMKKVLAA 253
I +A +K+++ A
Sbjct: 754 YIDRAFSTLKRMVGA 768
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 118/292 (40%), Gaps = 46/292 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + + YN+M+ Y K G + ME+NG D +TY T + D E
Sbjct: 318 GVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAE 377
Query: 68 DKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+ + ++ P V V + + NGY D AL M K ++S +
Sbjct: 378 ELLNNAVKEGFTPTV----VTFTNLINGYCMAEKFDDALRM--------KNKMMSSKCKL 425
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
L ++GK +I+SL+K D L+ A+++ E + L
Sbjct: 426 DLQVFGK---------------------------LINSLIKKDRLKEAKELLNEISANGL 458
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ +ID YC++G ++ A ++ + G + + ++ L G ++ ++HKA+
Sbjct: 459 VPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMA 518
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ K+ ++ P+V + L DE D A E++ G P
Sbjct: 519 LLTKM--QKDGII---PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 565
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 11/235 (4%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
R TV +NSM+ Y + G + L +MEE G D T + L A A D ++
Sbjct: 193 RVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLT-TGRL 251
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
L M + L + + + YGK G LD A + + IK +V A+N ++T+Y
Sbjct: 252 LEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFN---QMIKKDRV--AWNAMITVY 306
Query: 131 GKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
+ GK + ++ +E+ K V V+S+ + LE ++I +L ++
Sbjct: 307 SQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNI 366
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ L+D+Y + G +E+A + +K +W + T Y +A+
Sbjct: 367 YVATGLVDMYGKCGHIEEALRVFEAMPVKNE----ATWNAMITAYAHQGHAKEAL 417
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 17/211 (8%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V +N+M+ +Y + G + L EME+ G++ D T T LSA E +I T
Sbjct: 297 VAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETH 356
Query: 74 MEADPNVALDWVIYATVG--NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
++L IY G + YGK G +++AL + + K + +N ++T Y
Sbjct: 357 AS---EISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMP-----VKNEATWNAMITAYA 408
Query: 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
G + L +++ + V + + V+S+ + ++ + F E S +I
Sbjct: 409 HQGHAKEALLLFD--QMPVPPSDVTFIGVLSACVHAGLVDQGCRYFHEM-SSLFGLVPKI 465
Query: 192 PNF--LIDVYCRNGLLEKAENLVNHEKLKGR 220
++ +ID+ R GLL++A + E+ G+
Sbjct: 466 EHYTNIIDLLSRAGLLDEAWEFM--ERFPGK 494
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 9/215 (4%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLR 141
D V Y + +GY + L+ A+ +L SE +G ++N AY ++ L G+ D +R
Sbjct: 284 DVVTYGIMVHGYCTLSELETAIKLL--SEMAARGLELNPVAYTSVIALLCDEGQVSDAVR 341
Query: 142 IWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
+ E VL+ + V+S + DL +A F+E + + L D LI+ C
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260
R G L++AE ++ + KG ++ ++ L GY + ++ +A K++ T
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT---- 457
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
P+V + A D +GD+ A + + KG
Sbjct: 458 -PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGL 491
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 106/237 (44%), Gaps = 9/237 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V+ +++ + + G+ + EM++ G+ D TY ++ A + +
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+++L ME D + +D V Y + +GY KVG + +A + K ++ +V
Sbjct: 410 ERVLQEME-DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQK----RVTPNVVTYT 464
Query: 128 TLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L K+ DV + E+ K +++ Y ++I+ L K +LE A + + +
Sbjct: 465 ALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEA 524
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L D +I C++ L++A +L+ KG + + ++ L G+ + ++
Sbjct: 525 GLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 581
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 13/232 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA- 61
+M+ GLA V Y +++ + G ++ + ++ EME+ G+ D TY + Y
Sbjct: 380 EMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVG 439
Query: 62 --SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ + + PNV V Y + +G K G + A +L E KG ++
Sbjct: 440 KMTEAFLVHNKMVQKRVTPNV----VTYTALSDGLCKQGDVCAANELLH--EMCSKGLEL 493
Query: 120 N-SAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N YN ++ K G + +R + ++ + +K Y +I +L + +L+ A +
Sbjct: 494 NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLL 553
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
+E + + N L++ +C +G +E + L+ E + + IH + Y
Sbjct: 554 QEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL--EWMLEKNIHPNTTTY 603
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 36/233 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M GL YNS++ K GN E+ M +M+E G+ D YTY T + A
Sbjct: 483 LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQ 542
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG-----------LLDKALAM--- 106
+ + + +L M D + V Y + NG+ G +L+K +
Sbjct: 543 SKELDRAHSLLQEM-LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTT 601
Query: 107 --------------LKKSEEQIKG------AKVNSAYNVILTLYGKYGKKDDVLRIW-EL 145
+K + E KG + YN+++ + K + L E+
Sbjct: 602 TYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEM 661
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
+K ++ + Y +I L K A ++FE+ + L + + NF ID+
Sbjct: 662 IEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDL 714
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 114/261 (43%), Gaps = 13/261 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+A Y+ ++ Y + G +E L+ EME +G+ Y + L+ + D
Sbjct: 322 LDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRD 381
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL-AMLKKSEEQIKGAKV 119
D + +L M+A V D Y + + +GK L A+ A K EE I+ V
Sbjct: 382 RGDWQKAFAVLREMQAS-GVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVV 440
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL-KLDDLESAEKIFE 178
+N ++ + K G+ D ++E +++ N++ +LL + + E E +
Sbjct: 441 T--WNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLS 498
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + Q L + L+DVY R+G ++A + + K G + ++ L Y Q
Sbjct: 499 EMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQR- 557
Query: 239 QIHKAVEAMKKVLAAYQTLVK 259
++ + Y TL+K
Sbjct: 558 -------GLRPDVITYTTLMK 571
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 76/173 (43%), Gaps = 3/173 (1%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK--KDDVL 140
D +++ + + + + L D AL +L S + I ++A +++ G G+ + + L
Sbjct: 227 DAPLFSDLISAFARAALPDAALELLA-SAQAIGLTPRSNAVTALISALGTAGRVAEAEAL 285
Query: 141 RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
+ +K Y ++ +++ L++AE++ +E + D + L+D Y
Sbjct: 286 FLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYT 345
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
R G E A L+ + G + + + G+R KA ++++ A+
Sbjct: 346 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQAS 398
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 3/238 (1%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G++ YN ++K+ K FEK L+ M ENG+ D +Y T ++A A + +
Sbjct: 144 GMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDA 203
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
++ M V D + Y + +G+ + G KA + K+ + YN+++
Sbjct: 204 VELFDEMSVR-GVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMI 262
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
K GK D+ + +W KK K + + ++I L K + +AEK+F+E L
Sbjct: 263 NGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLS 322
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D R N ++ R G L K L N K ++ S+ L G N ++ +A+
Sbjct: 323 PDVRTYNAMLSGLFRTGKLNKCFELWNVMS-KNNCCNIVSYNMLIQGLLDNKKVEQAI 379
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 112/236 (47%), Gaps = 4/236 (1%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN M+ K G ++ + + M++N + D +T+ + + + A + +K+ M
Sbjct: 258 YNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEM- 316
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
+ ++ D Y + +G + G L+K + + V +YN+++ K
Sbjct: 317 IESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIV--SYNMLIQGLLDNKK 374
Query: 136 KDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
+ + W+L +++ +K + Y +I+ L K L A +I EE E++ DT +
Sbjct: 375 VEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSS 434
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
++ C+ G+LE+A L++ K R+++ + L GY + ++ +A+ ++++
Sbjct: 435 MVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREM 490
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 110/281 (39%), Gaps = 34/281 (12%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + GL + Y +++ K+GN L EM G+ D Y + + D
Sbjct: 175 MFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGD 234
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM---LKKSEEQI------ 114
++I + + +V Y + NG K+G LD+++ M +KK+E+
Sbjct: 235 FVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFS 294
Query: 115 -------KGAKVNSA------------------YNVILTLYGKYGKKDDVLRIWELYKKA 149
K N+A YN +L+ + GK + +W + K
Sbjct: 295 SMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKN 354
Query: 150 VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
Y +I LL +E A ++ + L D+ LI+ C+NG L KA
Sbjct: 355 NCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKAL 414
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
++ + +G ++ ++ + G + + +AVE + ++
Sbjct: 415 RILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQM 455
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 100/210 (47%), Gaps = 20/210 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY-- 58
Q+M + GL+ YN+ML ++TG K L + M +N C + +Y
Sbjct: 313 FQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNN--------CCNIVSYNM 364
Query: 59 --ADASDHEGIDKILT--MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
D++ +++ + + + + D Y + NG K G L+KAL +L+++E +
Sbjct: 365 LIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENE- 423
Query: 115 KGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLES 172
GA +++ AY+ ++ K G + + + KK + LN+ + ++I+ ++ LE
Sbjct: 424 -GADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEE 482
Query: 173 AEKIFEEWESQALCYDTRIP-NFLIDVYCR 201
A + E +S+ C T + N +I+ C+
Sbjct: 483 AISVLREMKSKD-CAPTVVSYNTIINGLCK 511
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 59/352 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKL---DSLMHEMEENGITYDRYTYCTRLSA 57
++ M+ G++ + YN+++ Y K G K+ D+++ EM +GI + T+ +
Sbjct: 186 IEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDG 245
Query: 58 YADASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALA--------- 105
+ + K+ M PNV V Y ++ NG G +++A A
Sbjct: 246 FCKDKNVSAAMKVFAEMNRQGVKPNV----VTYNSLINGLCNNGKVNEATALRDQMVNSC 301
Query: 106 -------------------MLKKSEEQI-----KGAKVN-SAYNVILTLYGKYGKKDDVL 140
M+K++ E +G N + YN+++ Y K +D
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAF 361
Query: 141 RIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199
++ + K V + Y +I+ L + DLE+A + E +++ L D N LID
Sbjct: 362 ALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSL 421
Query: 200 CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV---EAMKKV-----L 251
C G ++KA L++ KG + ++ + GY + + A+ M+KV +
Sbjct: 422 CNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANV 481
Query: 252 AAYQTLVKW---KPSVESLAACLDYFKDEGDIGGA---ENFIELLNDKGFIP 297
A Y L+K K +E L+ ++G I E E + +KGF+P
Sbjct: 482 ATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVP 533
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 114/251 (45%), Gaps = 3/251 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM G+ + V YN+M+ + + G+ + + + EM E G+ + TY + Y
Sbjct: 457 EKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKK 516
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D E + M + N+A + NG K G ++ LKK ++
Sbjct: 517 GDTEYAFGLYDRMRGE-NIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQE-GFIPTCM 574
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN I+ + K G + L ++ E+ K V Y N+I+ K ++++ A K+ +E
Sbjct: 575 TYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEM 634
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+++ + D + LID +CR G + A L++ + G + + + +G+R+ +
Sbjct: 635 KNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNM 694
Query: 241 HKAVEAMKKVL 251
A+ K+++
Sbjct: 695 EAALHLHKRMI 705
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 118/259 (45%), Gaps = 17/259 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K+ G T + YN ++ + K G+ ++ EM + G++ + +TY ++ +
Sbjct: 561 LKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCK 620
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+++ + K++ M+ + + LD +Y + +G+ + G + A +L SE Q G N
Sbjct: 621 SNNMDLALKVMDEMK-NKGIELDVTVYCALIDGFCRKGDMVNASQLL--SELQEVGLSPN 677
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLES 172
Y+ +++ + K + L + + +++N G Y +IS LLK L
Sbjct: 678 KVVYSSMISGFRKLQNMEAALHLHK------RMINEGIPCDLQIYTTLISGLLKEGKLLF 731
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A +++ E ++ + D + LI C G LE A+ ++ K V + L T
Sbjct: 732 ASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLIT 791
Query: 233 GYRQNSQIHKAVEAMKKVL 251
G+ + + +A ++L
Sbjct: 792 GHFKEGNLQEAFRLHNEML 810
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 122/285 (42%), Gaps = 15/285 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G VV +++K Y K G+ + L +M ENGI + TY +
Sbjct: 319 EMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNG 378
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ + +I M+ + +++ ++ GY K ++A + +E + N
Sbjct: 379 NMDKAYEIYNQMK-NKDISPTVFNVNSLIRGYLKARSPEEASKLF---DEAVACGIANVF 434
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN +L+ K GK + IWE + +K V+ Y N+I + D++SA +F E
Sbjct: 435 TYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEM 494
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY--YLATGYRQNS 238
+ L + + L+D Y + G E A L +++++G I + + G +
Sbjct: 495 LEKGLKPNLITYSVLMDGYFKKGDTEYAFGL--YDRMRGENIAPSDFTCNIIINGLCKAG 552
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283
+ ++ + +KK++ + P+ + +D F EG + A
Sbjct: 553 RTSESQDRLKKLVQE-----GFIPTCMTYNCIIDGFVKEGSVNSA 592
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 13/248 (5%)
Query: 50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
+Y L A A + ++ M + P+V V Y + +GY + L+ A+ +L
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDV----VTYGIMVHGYCTLSELETAIKLL-- 308
Query: 110 SEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKL 167
SE +G ++N AY ++ L G+ D +R+ E VL+ + V+S +
Sbjct: 309 SEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
DL +A F+E + + L D LI+ CR G L++AE ++ + KG ++ ++
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTY 428
Query: 228 YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
L GY + ++ +A K++ T P+V + A D +GD+ A +
Sbjct: 429 TVLIDGYCKVGKMTEAFLVHNKMVQKRVT-----PNVVTYTALSDGLCKQGDVCAANELL 483
Query: 288 ELLNDKGF 295
+ KG
Sbjct: 484 HEMCSKGL 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 106/237 (44%), Gaps = 9/237 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V+ +++ + + G+ + EM++ G+ D TY ++ A + +
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+++L ME D + +D V Y + +GY KVG + +A + K ++ +V
Sbjct: 410 ERVLQEME-DKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQK----RVTPNVVTYT 464
Query: 128 TLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L K+ DV + E+ K +++ Y ++I+ L K +LE A + + +
Sbjct: 465 ALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEA 524
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L D +I C++ L++A +L+ KG + + ++ L G+ + ++
Sbjct: 525 GLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 581
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 13/232 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA- 61
+M+ GLA V Y +++ + G ++ + ++ EME+ G+ D TY + Y
Sbjct: 380 EMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVG 439
Query: 62 --SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ + + PNV V Y + +G K G + A +L E KG ++
Sbjct: 440 KMTEAFLVHNKMVQKRVTPNV----VTYTALSDGLCKQGDVCAANELLH--EMCSKGLEL 493
Query: 120 N-SAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N YN ++ K G + +R + ++ + +K Y +I +L + +L+ A +
Sbjct: 494 NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLL 553
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
+E + + N L++ +C +G +E + L+ E + + IH + Y
Sbjct: 554 QEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLL--EWMLEKNIHPNTTTY 603
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 36/233 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M GL YNS++ K GN E+ M +M+E G+ D YTY T + A
Sbjct: 483 LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQ 542
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG-----------LLDKALAM--- 106
+ + + +L M D + V Y + NG+ G +L+K +
Sbjct: 543 SKELDRAHSLLQEM-LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTT 601
Query: 107 --------------LKKSEEQIKG------AKVNSAYNVILTLYGKYGKKDDVLRIW-EL 145
+K + E KG + YN+++ + K + L E+
Sbjct: 602 TYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEM 661
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
+K ++ + Y +I L K A ++FE+ + L + + NF ID+
Sbjct: 662 IEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDL 714
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 160/391 (40%), Gaps = 56/391 (14%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M LG V YN+++ Y GN E ++ M GI D YTY + +S
Sbjct: 199 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 258
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E + M + + + V Y T+ +GY G L++A + + E KG + S
Sbjct: 259 LEEASGLFDKM-VEIGLVPNAVTYNTLIDGYCNKGDLERAFSY--RDEMVKKGIMPSVST 315
Query: 123 YNVI---LTLYGKYGKKDDVLRIWELYKKAV-------KVLNNGYR-------------- 158
YN++ L + G+ G+ DD+++ E+ KK + +L NGY
Sbjct: 316 YNLLVHALFMEGRMGEADDMIK--EMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNE 373
Query: 159 --------------NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
++I L + + ++ A+ +FE+ Q + D + N +ID +C NG
Sbjct: 374 MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGN 433
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
+E+A L+ K ++ L G + ++ +A ++L KP
Sbjct: 434 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEA-----RMLLDEMKXRGIKPDH 488
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ----DKLLDNVQNGKSNLETLRE 320
S + + GDI A + + GF PT L K L Q G E L+E
Sbjct: 489 ISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKE 548
Query: 321 LYGNSLAGNEET-LSGPE--GDTSDLIEEKA 348
+ ++ ++ T LS E G+ L+E+ A
Sbjct: 549 MVNKGISPDDSTYLSLIEGMGNVDTLVEDNA 579
>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 553
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 88/218 (40%), Gaps = 44/218 (20%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T YN +L + +G E+ ++ M + D +Y T LSAY +
Sbjct: 333 FEEMLDAGVRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVN 392
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A D EG +K + D PNV V Y T+ GY K+ D + M K E ++G
Sbjct: 393 ADDMEGAEKFFKRLIQDDFEPNV----VTYGTLIKGYAKIN--DLEMVMKKYEEMLVRGI 446
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
K N + I+ YGK G D +SA
Sbjct: 447 KANQTILTTIMDAYGKSG----------------------------------DFDSAVHW 472
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
F+E ES + D + N L+ + + E+A LV H
Sbjct: 473 FKEMESNGIPPDQKAKNVLLSLPKTDEEREEANELVGH 510
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
++N M+ +Y K G++EK M E GI TY + +S D + I +
Sbjct: 245 MFNMMIYMYKKAGSYEKARKTFALMAERGIQQTTVTYNSLMSFETDYKEVSNIYDQMQRA 304
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA--KVNSAYNVILTLYGK 132
+ P+V V YA + + YGK ++ALA+ EE + AYN++L +
Sbjct: 305 DLRPDV----VSYALLVSAYGKARREEEALAVF---EEMLDAGVRPTRKAYNILLDAFSI 357
Query: 133 YGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIF-----EEWESQALC 186
G + +++ ++ + Y ++S+ + DD+E AEK F +++E +
Sbjct: 358 SGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVVT 417
Query: 187 YDTRIPNF 194
Y T I +
Sbjct: 418 YGTLIKGY 425
>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 484
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 139/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGILIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS +L ++Y + G AE + L
Sbjct: 338 KAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNL--MIEYLCNNGQASKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 MKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|224144700|ref|XP_002325381.1| predicted protein [Populus trichocarpa]
gi|222862256|gb|EEE99762.1| predicted protein [Populus trichocarpa]
Length = 1071
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 6/214 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR +GL V+Y+ ++ + K N+ + L +M + I ++T + L+ Y
Sbjct: 317 EMRTMGLVPEEVIYSLLITVSTKNSNWHEALKLYEDMRSHRIVPSKFTCASLLTMYYKIK 376
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
D+ + M++ N+A D VIY + YGK+GL + A +++E G N
Sbjct: 377 DYSKALSLFIQMQSK-NIAADEVIYGLLIRIYGKLGLYEDAQKTFEETERS--GLLSNEK 433
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y + ++ G + L + E+ K + + + Y ++ +DL+SAE F+
Sbjct: 434 TYLAMAQVHLSSGNFEKALSVIEVMKSRNIWLSRFAYIVLLQCYCMKEDLDSAEVTFQAL 493
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
S+ C D + +I++Y R G EKA++ + H
Sbjct: 494 -SKIGCPDAGSCSDMINLYVRLGFTEKAKDFIVH 526
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 26/197 (13%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM++ G+ V YN M K+Y +G + +++ L ME +G D +TY + + AY+++S
Sbjct: 864 KMQEEGIKPGVVSYNVMAKVYAMSGLYHEVEELFKVMERDGCPPDSFTYLSLVQAYSESS 923
Query: 63 DHEGIDKILTMME---ADPNVA-LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
++ + M+ P+ A ++YA V K GL+ +A ++ ++ A
Sbjct: 924 KCLEAEETINAMQKKGIPPSCAHFKHLLYALV-----KAGLMVEA----ERVYMELLSAG 974
Query: 119 VNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL-----DDL 170
+N +L Y YG + ++ +E ++ VK R ++S+ + L L
Sbjct: 975 LNPDLVCCRAMLRGYMDYGHVEKGIKFYEQIRELVK----ADRFIMSAAVHLYKSAGKKL 1030
Query: 171 ESAEKIFEEWESQALCY 187
E AE +FE +S + +
Sbjct: 1031 E-AEVLFESMKSLRISF 1046
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
TV YN +K + G S+ M G T TY T +S Y +DK +
Sbjct: 769 TVAYNIFIKAMLEAGRLHFATSIYEHMLLLGFTPSIQTYNTMISVYGRGRK---LDKAVE 825
Query: 73 MME--ADPNVALDWVIYATVGNGYGKVGLLDKA-LAMLKKSEEQIKGAKVNSAYNVILTL 129
+ V+LD Y + N YGK G +A L K EE IK V +YNV+ +
Sbjct: 826 VFNTACSSGVSLDEKAYMNMINYYGKAGKRHEASLLFAKMQEEGIKPGVV--SYNVMAKV 883
Query: 130 Y---GKYGKKDDVLRIWE 144
Y G Y + +++ ++ E
Sbjct: 884 YAMSGLYHEVEELFKVME 901
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 129/292 (44%), Gaps = 14/292 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM + G T + YN +L +Y K G + K+ L M+ GI D YTY T ++
Sbjct: 56 FKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCR 115
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S +E + M++ V D V Y T+ + YGK + +A+ +L+ E ++ G
Sbjct: 116 RGSLYEEAAAVFEDMKSMGFVP-DKVTYNTLLDVYGKSRRIKEAIEVLR--EMEVNGCSP 172
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ YN +++ Y + G ++ + + ++ ++ +K+ Y ++S ++ ESA ++F
Sbjct: 173 SIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVF 232
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EE + + N LI ++ G + + K+ + +W L + QN
Sbjct: 233 EEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQN 292
Query: 238 ---SQIHKAVEAMKKV-----LAAYQTLVKWKPSVESLAACLDYFKDEGDIG 281
S++ + MK+V Y TL+ S + +K D G
Sbjct: 293 GMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTG 344
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 143/341 (41%), Gaps = 25/341 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M++ G+ YN+++ + +E+ ++ +M+ G D+ TY T L Y
Sbjct: 92 FEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGK 151
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ++L ME + + V Y ++ + Y + GLL++A+ + K++ +G K++
Sbjct: 152 SRRIKEAIEVLREMEVN-GCSPSIVTYNSLISAYARDGLLEEAMEL--KNQMVERGIKLD 208
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD----DLESAEK 175
Y +L+ + + GK + +R++E + A N N +L+K+ K
Sbjct: 209 VFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFN---ALIKMHGNRGKFAEMMK 265
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+FEE + D N L+ V+ +NG+ + + K G ++ L + Y
Sbjct: 266 VFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYS 325
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ +A+ K++L T P + + A L G +E + + D
Sbjct: 326 RCGSFDQAMAMYKRMLDTGIT-----PDLSTYNAVLAALARGGLWEQSEKILAEMQDGMC 380
Query: 296 IPTDLQD-KLLDNVQNGKSNLETLRELYGNSLAGNEETLSG 335
P +L LL NGK G LA EE SG
Sbjct: 381 KPNELTHCSLLHAYANGKE--------IGRMLALAEEICSG 413
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 19/270 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G + + V YNS++ Y + G E+ L ++M E GI D +TY LS +
Sbjct: 162 LREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVR 221
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
E ++ M PN+ + GN GK A + K E+IK
Sbjct: 222 TGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGN-RGK-------FAEMMKVFEEIKIC 273
Query: 118 KVNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDLESA 173
+N +L ++G+ G +V +++ K+ V + Y +IS+ + + A
Sbjct: 274 CCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQA 333
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK---LKGREI-HVKSWYY 229
+++ + D N ++ R GL E++E ++ + K E+ H +
Sbjct: 334 MAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHA 393
Query: 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVK 259
A G + A E V+ + L+K
Sbjct: 394 YANGKEIGRMLALAEEICSGVIEPHAVLLK 423
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 118/253 (46%), Gaps = 15/253 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M D G+ YN++L + G +E+ + ++ EM++ + T+C+ L AYA+
Sbjct: 338 KRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANG 397
Query: 62 SDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLL---DKALAMLKKSEEQIKG 116
+ I ++L + E + ++ V+ T+ K LL ++A LK+ KG
Sbjct: 398 KE---IGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKR-----KG 449
Query: 117 AKVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAE 174
+ S N ++ +YG+ I K++ + Y +++ + ++ E +E
Sbjct: 450 FSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSE 509
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ +E ++ + D N +I YCRNG +++A ++ + + G V ++ Y
Sbjct: 510 EVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASY 569
Query: 235 RQNSQIHKAVEAM 247
+S +A++ +
Sbjct: 570 AADSMFEEAIDVV 582
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 11/173 (6%)
Query: 77 DPNV-ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYG 134
+P+V A +I A V NG + +A+ + KK EE+ G K YNVIL +YGK G
Sbjct: 30 EPDVYAYTSLITACVSNGRYR-----EAVMVFKKMEEE--GCKPTLITYNVILNVYGKMG 82
Query: 135 KK-DDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ + ++E K A + + Y +I+ + E A +FE+ +S D
Sbjct: 83 MPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTY 142
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
N L+DVY ++ +++A ++ ++ G + ++ L + Y ++ + +A+E
Sbjct: 143 NTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAME 195
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G + YNS++ ++ ++ NFE+ + ++ E+ GI D +Y T + AY
Sbjct: 480 MKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGR 539
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ I + M + + D + Y T Y + ++A+ ++ + G K N +
Sbjct: 540 MKEASHIFSEMR-ESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKH--GCKPNQNT 596
Query: 123 YNVILTLYGKYGKKDDVLRI 142
YN ++ Y K ++DD ++
Sbjct: 597 YNSVIDGYCKLNRRDDAIKF 616
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 107/259 (41%), Gaps = 15/259 (5%)
Query: 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW 84
K G SL++ + ++G D Y Y + ++A + + ME +
Sbjct: 10 KEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE-GCKPTL 68
Query: 85 VIYATVGNGYGKVGLL-DKALAMLKKSEEQIKGAKV---NSAYNVILTLYGKYGKKDDVL 140
+ Y + N YGK+G+ +K + E +K A + YN ++T + ++
Sbjct: 69 ITYNVILNVYGKMGMPWNKITGLF----EGMKNAGILPDEYTYNTLITCCRRGSLYEEAA 124
Query: 141 RIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199
++E K V + Y ++ K ++ A ++ E E N LI Y
Sbjct: 125 AVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAY 184
Query: 200 CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK 259
R+GLLE+A L N +G ++ V ++ + +G+ + + A+ +++ A
Sbjct: 185 ARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTA-----G 239
Query: 260 WKPSVESLAACLDYFKDEG 278
KP++ + A + + G
Sbjct: 240 CKPNICTFNALIKMHGNRG 258
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 14/303 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M+DL ++ YN+M+ + + ++ L EM+E G +R TY L Y
Sbjct: 272 FQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGK 331
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
H+ ++L MEA PN+ V Y + Y + GL D+A A LKKS
Sbjct: 332 GGMHKEASELLVEMEAAGISPNI----VTYNELIAAYARAGLCDEA-AALKKSLLSKGLC 386
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL-KLDDLESAEKI 176
Y +++ + + + + L + +K N N++ + +++ L+ K+
Sbjct: 387 PDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKV 446
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+ + + D N L+ + G+L + N+ K G V ++ L Y +
Sbjct: 447 FKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGR 506
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ +V+ K +L +P+V + AA + EG E + + + G
Sbjct: 507 CGYVDYSVDIYKGLLR-----TGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQ 561
Query: 297 PTD 299
+D
Sbjct: 562 LSD 564
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 9/215 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGN-FEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+ M+ G V YN ML LY K G+ ++++ SL EM++ I+ D YTY T ++A
Sbjct: 236 FETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACI 295
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S + ++ M+ + + V Y + + YGK G+ +A +L E + G
Sbjct: 296 QNSHCQEALRLFQEMK-EAGCCPNRVTYNALLDVYGKGGMHKEASELL--VEMEAAGISP 352
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N YN ++ Y + G D+ + + L K + Y +IS+ + + E A + F
Sbjct: 353 NIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETF 412
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
E + N LID+Y G +EK ++++
Sbjct: 413 TEMRKTNCTPNIVTYNILIDIY---GRMEKLDDMM 444
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 115/298 (38%), Gaps = 40/298 (13%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL T + +++ + G +++ + + EM E G+ + + +YA++ +
Sbjct: 524 GLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQL 583
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
K + +E L ++ T Y K G+ ++A L +
Sbjct: 584 RKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQ------------------ 625
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
LY D +KV N +IS K +E A K+ EE L
Sbjct: 626 -LYDNGHSPD------------IKVFNA----MISMCAKRGWIERAVKLLEEIRKAQLKP 668
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D N L+ +Y R G+ KAE +++ + G+ ++ ++ L Y ++ ++ A
Sbjct: 669 DGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVF 728
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
++AA + +P + + + G A + IE + + G PT + K L
Sbjct: 729 GDMVAA-----RVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKAL 781
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++++R L V YN ++ +Y + G + K + +M EM G + TY T L +Y
Sbjct: 658 LEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTK 717
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK 108
+ ++ M A V D + T+ Y +GL +AL++++
Sbjct: 718 HGRMDDAARVFGDMVAA-RVRPDNFTFNTLVGSYSSLGLYKEALSVIE 764
>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 484
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 139/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIIMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + + ++Y + G AE + L
Sbjct: 338 KAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNSMIEYLCNNGQASKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 MKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 128/289 (44%), Gaps = 16/289 (5%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y++++ Y + GN + + E NGI + TY ++ + E + +LT M+
Sbjct: 241 YSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQ 300
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYG 134
V + +I+ T+ +GY + G++DKAL + K+ + G +++ YN + +
Sbjct: 301 LR-GVGHNQIIFNTMIDGYCRHGMVDKALEI--KAVMERMGIQLDVYTYNTLACGLCRVN 357
Query: 135 KKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ +D ++ + + V+ Y +IS K D+ A ++F + E + N
Sbjct: 358 RMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYN 417
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV---EAMKKV 250
+ID Y ++G + +AE + KG V ++ L G+ N ++ A+ E MK+
Sbjct: 418 VMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQR 477
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
A KP+V + A + EG A F + + G P D
Sbjct: 478 GA--------KPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDD 518
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 130/338 (38%), Gaps = 88/338 (26%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ YN +L Y + N ++ ++ EME G+ TY + +
Sbjct: 156 LDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVDGLST 215
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A D ++ + ++ NVA D Y+ V N Y + G
Sbjct: 216 AGDISKVESVFDEIKRK-NVAGDVYFYSAVINAYCRAG---------------------- 252
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
+V R E++ + V NG Y +I+ K+ +E+A
Sbjct: 253 -----------------NVRRASEVFDECV---GNGIEPNERTYGALINGFCKIGQIEAA 292
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E + + + + + ++ I N +ID YCR+G+++KA + + G ++ V ++ LA G
Sbjct: 293 EMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACG 352
Query: 234 YRQNSQIHKAVEAMKKVL------------AAYQTLVKW--------------------- 260
+ +++ A KK+L +Y TL+
Sbjct: 353 LCRVNRMEDA----KKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKG 408
Query: 261 -KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+PSV + +D + G I AE F + + KG +P
Sbjct: 409 SRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVP 446
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 134/304 (44%), Gaps = 20/304 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G+ T Y ++ G+ K++S+ E++ + D Y Y ++AY
Sbjct: 191 LKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCR 250
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + ++ + + + Y + NG+ K+G ++ A +L ++ Q++G N
Sbjct: 251 AGNVRRASEVFDECVGN-GIEPNERTYGALINGFCKIGQIEAAEMLL--TDMQLRGVGHN 307
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+N ++ Y ++G D L I + ++ +++ Y + L +++ +E A+K+
Sbjct: 308 QIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLH 367
Query: 179 EW-----ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
ES + Y T LI ++ + G + +A L + KG V ++ + G
Sbjct: 368 IMTENGVESNYVSYTT-----LISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDG 422
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
Y ++ I +A E KK + + LV P V + AA + G + A E + +
Sbjct: 423 YIKSGSIREA-ERFKKEMEK-KGLV---PDVYTYAALVHGHCVNGKVDVALRLFEEMKQR 477
Query: 294 GFIP 297
G P
Sbjct: 478 GAKP 481
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 13/199 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +G+ YN++ + E L+H M ENG+ + +Y T +S ++ D
Sbjct: 334 MERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGD 393
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
++ ME + P+V V Y + +GY K G + +A K+ E K V
Sbjct: 394 MVEARRLFRDMEGKGSRPSV----VTYNVMIDGYIKSGSIREAERFKKEME---KKGLVP 446
Query: 121 SAYNVILTLYGKY--GKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y ++G GK D LR++ E+ ++ K Y +IS L K E A + +
Sbjct: 447 DVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFY 506
Query: 178 EEWESQALCYDTRIPNFLI 196
+ + L D + + L+
Sbjct: 507 DNMLAAGLTPDDTLYSMLV 525
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 16/297 (5%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D G+ +N +++ ++G ++ EM G+ T+ T +S ASD
Sbjct: 235 DAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLN 294
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+ + +M A +A D Y G K G + A+ M ++ E +G N+ V
Sbjct: 295 NANALRGLM-AKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCE--RGLNPNTV--V 349
Query: 126 ILTLYGKYGKKDDV-----LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ TL + K+ DV LR WE+ + VK Y +++ ++ D+++A I EE
Sbjct: 350 LTTLIDAHCKEGDVTAGLELR-WEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEM 408
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L D LID C+ G L+ A + +G + ++ L +G S+
Sbjct: 409 RKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGL---SKA 465
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++V+A +++L +P + +D F GD+ ++ + +KG P
Sbjct: 466 GRSVDA-ERILCEMME-AGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNP 520
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 98/214 (45%), Gaps = 11/214 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ V YN+++ + + + + + ++ EM ++G+ D+ TY T + D
Sbjct: 372 EMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLI----DGC 427
Query: 63 DHEG-IDKILTMME--ADPNVALDWVIYATVGNGYGKVGL-LDKALAMLKKSEEQIKGAK 118
EG +D + M + +D VALD V Y + +G K G +D + + E ++
Sbjct: 428 CKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQ--P 485
Query: 119 VNSAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N+ Y +++ + K G K + E+ K Y V++ L +++A+ +
Sbjct: 486 DNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLL 545
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ +C + N L+D +C++G + E L
Sbjct: 546 NAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL 579
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 7/243 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+A Y + ++ KTG + + EM E G+ + T + A+ D
Sbjct: 303 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 362
Query: 64 -HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNS 121
G++ M A V D V Y + NG+ +V + A ++++ ++ +K KV
Sbjct: 363 VTAGLELRWEM--ATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVT- 419
Query: 122 AYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++ K G+ D + + E+ + V + + Y +IS L K AE+I E
Sbjct: 420 -YTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEM 478
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L D +ID +C+NG ++ + + KG+ + ++ + G+ Q+
Sbjct: 479 MEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQM 538
Query: 241 HKA 243
A
Sbjct: 539 KNA 541
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR GL V Y +++ K G + + EM + G+ D TY +S +
Sbjct: 405 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 464
Query: 61 ASDHEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A ++IL MMEA + D Y V + + K G + LK+ + + K +
Sbjct: 465 AGRSVDAERILCEMMEA--GLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGI 522
Query: 120 NSAYNVILTLYGKYGK 135
+ YNV++ + G+
Sbjct: 523 VT-YNVVMNGFCSLGQ 537
>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
Length = 590
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 136/299 (45%), Gaps = 16/299 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM +G+ ++N ++ K+G+ EK + L++EME I D +TY T +S Y
Sbjct: 186 KKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKK 245
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
H I ME V+ D V Y ++ G+ + G + +AL + + +I GA N
Sbjct: 246 GMHYEALGIQDRMERG-GVSPDIVTYNSLIYGFCREGRMREALRLFR----EINGATPNH 300
Query: 122 A-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG---YRNVISSLLKLDDLESAEKIF 177
Y ++ Y + ++ LR+ E+ + V+ L+ G Y +++ L + ++ A ++
Sbjct: 301 VTYTTLIDGYCRVNDLEEALRLREVME--VEGLHPGVVTYNSILRKLCEEGKIKDANRLL 358
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + + D N LI+ YC+ G + A + G + ++ L G+ +
Sbjct: 359 NEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKL 418
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ A E + ++L A + PS + + +D + D+ + + L+ KG
Sbjct: 419 HEVDSAKEFLFEMLDA-----GFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLF 472
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 11/238 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V YNS+L+ + G + + L++EM E + D T T ++AY D
Sbjct: 330 GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSA 389
Query: 68 DKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126
K+ M+EA + D + + +G+ K+ +D A K+ ++ A + +Y+
Sbjct: 390 MKVKKKMLEA--GLKPDQFTFKALIHGFCKLHEVDSA----KEFLFEMLDAGFSPSYSTY 443
Query: 127 LTLYGKYGKKDD---VLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
L Y +D+ V+R+ EL +K + V + YR +I L K+D +ESAE+IF +
Sbjct: 444 SWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQG 503
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + D+ + L Y + G A ++++ + I +K + + Y + I
Sbjct: 504 KGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDGSI 561
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 142 IWELYKKAVK---VLNNGYRNV-ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
+W++YKK V+ V N NV I + K D+E AE++ E ES+ + D N LI
Sbjct: 181 VWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLIS 240
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
+YC+ G+ +A + + + G + ++ L G+ + ++ +A+ +++ A
Sbjct: 241 LYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGA---- 296
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P+ + +D + D+ A E++ +G P
Sbjct: 297 ---TPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHP 333
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 133/305 (43%), Gaps = 22/305 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDS----LMHEMEENGITYDRYTYCTRLS 56
+++M G+A + Y++++ K E+LD L+ E+ G T D TY T +
Sbjct: 207 VEEMLHRGMAANAITYSALVDGLCKC---ERLDEAVALLLGEVTRRGFTPDIVTYSTVID 263
Query: 57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
A I M P + Y ++ GY + G +D+A+ +L K +
Sbjct: 264 GLCKAGRLRDAVDIFEEMSCAPTA----ITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCA 319
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV--KVLNN--GYRNVISSLLKLDDLES 172
V + Y +++ + K G+ DD +EL+++ V K+ + + +++ L +E
Sbjct: 320 PDVIT-YTTLMSAFCKMGRLDDA---YELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED 375
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A ++ EE + N ++D YC++ + KAE LV + +G + ++ L
Sbjct: 376 ALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVA 435
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
G + + +A++ + ++ + SV A LD +G A F E +
Sbjct: 436 GCCRAGRTDQALQYLDQLNSEGG---PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQ 492
Query: 293 KGFIP 297
+G++P
Sbjct: 493 RGYVP 497
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 35 LMHEMEENGITYDRYTYCTRLSAYADA-SDHEGIDKILTMMEADPN---VALDWVIYATV 90
L+ EM G+ + TY SA D E +D+ + ++ + D V Y+TV
Sbjct: 206 LVEEMLHRGMAANAITY----SALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTV 261
Query: 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY---K 147
+G K G L A+ + E++ A YN ++ Y + G D+ +R+
Sbjct: 262 IDGLCKAGRLRDAVDIF----EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDN 317
Query: 148 KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK 207
A V+ Y ++S+ K+ L+ A ++F++ + L D L+D C G +E
Sbjct: 318 CAPDVIT--YTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED 375
Query: 208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
A L+ +G + ++ + GY +++Q+ KA E
Sbjct: 376 ALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEE 413
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 3/219 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M L+ V + S++ G E L+ E+ G YTY + Y
Sbjct: 345 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 404
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
++ ++++ + V + V Y + G + G D+AL L + + +
Sbjct: 405 SNQVRKAEELVADFRSRGFVP-NTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTS 463
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
A Y +IL + G+ DD ++ +E + ++ + V+ +L K + A ++ E
Sbjct: 464 VAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLE 523
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
E + ++ YCR G+++KA+ L + +L
Sbjct: 524 EMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 562
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 111/254 (43%), Gaps = 16/254 (6%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
++ A T + YNS++ Y + G+ ++ L+ +M ++ D TY T +SA+ +
Sbjct: 280 EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLD 339
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
++ M A+ ++ D V + ++ +G G ++ AL +L++ + + + YN
Sbjct: 340 DAYELFQQMVAN-KLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYT-YNC 397
Query: 126 ILTLYGKYGKKDDVLRIWEL---YKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWE 181
++ Y K + V + EL ++ V N Y +++ + + A + ++
Sbjct: 398 VVD---GYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLN 454
Query: 182 SQALCYDTRIPNF--LIDVYCRNGLLEKA----ENLVNHEKLKGREIHVKSWYYLATGYR 235
S+ T + + ++D CR+G + A E ++ + + L +
Sbjct: 455 SEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAH- 513
Query: 236 QNSQIHKAVEAMKK 249
Q Q H+ +E M K
Sbjct: 514 QPQQAHELLEEMIK 527
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 140/309 (45%), Gaps = 34/309 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + + +N ++ ++ K G ++ + L EM GI+ + TY + + Y
Sbjct: 263 LKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCM 322
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + +L +M + N + D V + ++ GY KV +D+ + + +K + +G N
Sbjct: 323 QNRLSEANNMLDLMVRN-NCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISK--RGLVAN 379
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVK--VLNN--GYRNVISSLLKLDDLESAE 174
+ Y++++ + + GK L I E L+++ V VL + Y ++ L LE A
Sbjct: 380 TVTYSILVQGFCQSGK----LEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKAL 435
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+IFE+ + + D + +I+ C+ G +E A NL KG + +V ++ + +G
Sbjct: 436 EIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 495
Query: 235 RQNSQIHKAVEAMKKVL--------AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
+ + +A ++K+ Y TL++ + +D GD+ +
Sbjct: 496 CKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRA------------HLRD-GDLTASAKL 542
Query: 287 IELLNDKGF 295
IE + GF
Sbjct: 543 IEEMKSCGF 551
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 111/284 (39%), Gaps = 44/284 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + G V YNS++ K+G+ L+ +M+E + D +TY T + +
Sbjct: 158 VARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCR 217
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ME + V Y ++ G K G + + +LK + V
Sbjct: 218 DGCIDAAISLFKEMETK-GIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVI 276
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK----------------------------- 151
+ +NV++ ++ K GK + ELYK+ +
Sbjct: 277 T-FNVLIDVFVKEGKLQEA---NELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNM 332
Query: 152 ----VLNNG------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
V NN + ++I K+ ++ K+F + + L +T + L+ +C+
Sbjct: 333 LDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQ 392
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+G LE AE L G V ++ L G N ++ KA+E
Sbjct: 393 SGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALE 436
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 117/283 (41%), Gaps = 38/283 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MR G+ V+ S++ Y + S + EM+ G+ TY ++ Y
Sbjct: 276 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGK 335
Query: 61 ASDHEGIDKILTMMEADPNV-ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D E DK+ EA + L+ +IY+ + + + + G +D+A ++++ EE A +
Sbjct: 336 TNDAESADKLFK--EAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPI 393
Query: 120 NS----------------------------------AYNVILTLYGKYGKKDDVLRIW-E 144
+ +Y ++ LY K GK L + E
Sbjct: 394 DVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKE 453
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ +K N Y +I+ + L D +A IFE+ L D I N L++ +C+ G
Sbjct: 454 MESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGN 513
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
+++A + K + + +++ + G+ + +A++ +
Sbjct: 514 MDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTL 556
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 111/276 (40%), Gaps = 44/276 (15%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
++Y++++ + ++GN ++ + L+ EMEE+GI Y + + Y A D + K L +
Sbjct: 359 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEK---KCLIV 415
Query: 74 MEADPNVALDWVI--YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN----------- 120
E I Y + N Y K+G + KALA+ K+ E G K N
Sbjct: 416 FERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESH--GIKHNNKTYSMLINGF 473
Query: 121 -------------------------SAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLN 154
+ YN+++ + K G D +RI+E KK ++ N
Sbjct: 474 IHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSN 533
Query: 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
+R +I D++ A + N LI R +E+A ++++
Sbjct: 534 RTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDK 593
Query: 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ G + ++ + GY + I KA E K+
Sbjct: 594 MSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKI 629
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/335 (18%), Positives = 134/335 (40%), Gaps = 47/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ G + + Y ++ LY K G K ++ EME +GI ++ TY ++ +
Sbjct: 416 FERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIH 475
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D I M + D IY + + K+G +D+A+ + ++ +++ + N
Sbjct: 476 LHDFANAFSIFEDM-IKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKE-RMQPSN 533
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK-------------------------AVKVLN- 154
+ I+ + G L +L ++ AV VL+
Sbjct: 534 RTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDK 593
Query: 155 ----------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ Y ++ D+ A + F + + L D I L+ C++G
Sbjct: 594 MSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGR 653
Query: 205 LEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
++ A L ++ ++I ++ Y L G+ + + +A + MK++ P
Sbjct: 654 MQSA--LAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKED-----GIPP 706
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ + + ++ GD+ AEN I+ + D G P
Sbjct: 707 NIHTFTSYINACCKAGDMQRAENVIQEMADVGLKP 741
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 9/233 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G A T + YN+++ + E+ S++ +M GI + +TY + YA + D
Sbjct: 559 MRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGD 618
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T ++ + + LD IY T+ K G + ALA+ ++ Q K + Y
Sbjct: 619 IGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ-KIPRNTFIY 676
Query: 124 NVILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
N+++ + + G DV +L K+ + + + + I++ K D++ AE + +E
Sbjct: 677 NILIDGWARRG---DVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQE 733
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
L + + LI + + L ++A K G + +++ L T
Sbjct: 734 MADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVT 786
>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Vitis vinifera]
Length = 590
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 136/299 (45%), Gaps = 16/299 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM +G+ ++N ++ K+G+ EK + L++EME I D +TY T +S Y
Sbjct: 186 KKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKK 245
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
H I ME V+ D V Y ++ G+ + G + +AL + + +I GA N
Sbjct: 246 GMHYEALGIQDRMERG-GVSPDIVTYNSLIYGFCREGRMREALRLFR----EINGATPNH 300
Query: 122 A-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG---YRNVISSLLKLDDLESAEKIF 177
Y ++ Y + ++ LR+ E+ + V+ L+ G Y +++ L + ++ A ++
Sbjct: 301 VTYTTLIDGYCRVNDLEEALRLREVME--VEGLHPGVVTYNSILRKLCEEGKIKDANRLL 358
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + + D N LI+ YC+ G + A + G + ++ L G+ +
Sbjct: 359 NEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKL 418
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ A E + ++L A + PS + + +D + D+ + + L+ KG
Sbjct: 419 HEVDSAKEFLFEMLDA-----GFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLF 472
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 5/235 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V YNS+L+ + G + + L++EM E + D T T ++AY D
Sbjct: 330 GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSA 389
Query: 68 DKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126
K+ M+EA + D + + +G+ K+ +D A L + + + S Y+ +
Sbjct: 390 MKVKKKMLEA--GLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA-GFSPSYSTYSWL 446
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ Y K+ V+R+ EL +K + V + YR +I L K+D +ESAE+IF + + +
Sbjct: 447 VDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGM 506
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
D+ + L Y + G A ++++ + I +K + + Y + I
Sbjct: 507 KGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDGSI 561
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 142 IWELYKKAVK---VLNNGYRNV-ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
+W++YKK V+ V N NV I + K D+E AE++ E ES+ + D N LI
Sbjct: 181 VWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLIS 240
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
+YC+ G+ +A + + + G + ++ L G+ + ++ +A+ +++ A
Sbjct: 241 LYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGA---- 296
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P+ + +D + D+ A E++ +G P
Sbjct: 297 ---TPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHP 333
>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 135/316 (42%), Gaps = 14/316 (4%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
+ Y++M+ +Y + G FEK + +M +M + I DR + +++ Y E + I
Sbjct: 113 QVVAAYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHI 172
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTL 129
+ ME + L V Y ++ YGK GL +KAL + +K +E G + + Y+ ++
Sbjct: 173 MDTME-RLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKE--AGLEPDEVTYSCMIGA 229
Query: 130 YGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
G+ GK D L ++ K+ + ++ + +IS K ++ ++ + ++ D
Sbjct: 230 CGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPD 289
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
++ + ++ Y R G +K +++ + G W Y ++ K
Sbjct: 290 SQTLDAVVRAYERAGQTKKVVQVLSLLREAG-------WVEDTESYGTLLHVYLKCNLQK 342
Query: 249 KVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLD 306
+ L+ + + K P + + KD G A N + G +P+ +
Sbjct: 343 EALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMI 402
Query: 307 NVQNGKSNLETLRELY 322
NV K +++ EL+
Sbjct: 403 NVHGLKGDVKQAEELF 418
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 94/208 (45%), Gaps = 2/208 (0%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G+A + S++ G FE ++ +M+ G+ T CT ++ + D
Sbjct: 351 MRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGD 410
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ +++ + + + LD + Y + N Y + G+ ++A + K EE+ + Y
Sbjct: 411 VKQAEELFRSLRSSVS-KLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTY 469
Query: 124 NVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ +L + K + I W L V++ V+++ + LE KIF+E
Sbjct: 470 HSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQEMID 529
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAEN 210
+T N +ID+Y ++G+L++A +
Sbjct: 530 VGCIPNTITFNVMIDLYGKSGMLDRARD 557
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 11/138 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q+M D+G T+ +N M+ LY K+G ++ ++ G+ D+ T+ T +++Y
Sbjct: 525 QEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGVA-DKITFSTLINSYGKK 583
Query: 62 SDHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDK---ALAMLKKSEEQIKGA 117
D ++ L M A +L+ Y V + YGK G LDK +A ++KS Q+ A
Sbjct: 584 QDFRNMEATLWEMQNAGHGGSLE--AYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLA 641
Query: 118 KVNSAYNVILTLYGKYGK 135
+YN+++ +YG++ K
Sbjct: 642 ----SYNILINIYGRHTK 655
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 97/245 (39%), Gaps = 34/245 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY------CTR 54
M M LG+ V YNSM+ Y K G +EK L +M+E G+ D TY C R
Sbjct: 173 MDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGR 232
Query: 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL--------------- 99
DA D+ K L +M A N +Y N G V +
Sbjct: 233 AGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQT 292
Query: 100 LDKALAMLKKSEEQIKGAKVNS------------AYNVILTLYGKYGKKDDVLRIWELYK 147
LD + +++ + K +V S +Y +L +Y K + + L ++ +
Sbjct: 293 LDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMR 352
Query: 148 KA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
KA + R++I + E A +F + +S + +I+V+ G ++
Sbjct: 353 KAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVK 412
Query: 207 KAENL 211
+AE L
Sbjct: 413 QAEEL 417
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT--RLSAYAD 60
+M GL YN ++ +Y + ++++L H+M+E G DR+TY T R YAD
Sbjct: 630 RMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYAD 689
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG-LLDKA 103
D + +D MM+ D + D V Y + + K G LL+ A
Sbjct: 690 YPD-KAVDT-FKMMQ-DSGIMPDRVTYVMLVAAFEKAGNLLEAA 730
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEE-NGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ YN ++ +Y + G E+ + MEE +G+ D YTY + L + ++I
Sbjct: 431 IAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYW 490
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKVNS-AYNVILTLY 130
+ + +V LD V+ V N + L++ + +E I G N+ +NV++ LY
Sbjct: 491 RLR-NSDVELDEVMCNCVLNTCARFLPLEEVHKIF---QEMIDVGCIPNTITFNVMIDLY 546
Query: 131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
GK G D +L ++ + +I+S K D + E WE Q +
Sbjct: 547 GKSGMLDRARDASKLAQQLGVADKITFSTLINSYGKKQDFRNMEATL--WEMQNAGHGGS 604
Query: 191 IP--NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ N ++D Y + G L+K E+++ + G ++ + S+ L Y ++++I
Sbjct: 605 LEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHTKI 656
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 134/326 (41%), Gaps = 62/326 (19%)
Query: 4 MRDLGLARTTVV-YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
M++ G R V YN M K+ + +D L+ +M +G D YT+ T + + + A
Sbjct: 1 MQENGKTRGNVYSYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKA- 59
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D+ YAT +A M+ E+ ++ ++
Sbjct: 60 --------------------DYADYAT------------RAFQMM--LEKGVQPTRLT-- 83
Query: 123 YNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y++++ LY K GK +D + + + ++V+ Y +I+ + E AEKI E+
Sbjct: 84 YSMMMLLYQKNGKVEDAEVAFSHMLQSGIQVV-AAYSAMIAIYTRCGFFEKAEKIMEDMW 142
Query: 182 SQALCYDTRIPNFL--IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + D N+L ++ Y + G +E+AE++++ + G + V + + T Y +
Sbjct: 143 NHKIAPDR--DNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGL 200
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KA+ +K+ A +P + + + G + A ++ + + G +P
Sbjct: 201 YEKALRLFEKMKEA-----GLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMP-- 253
Query: 300 LQDKLLDNVQNGKSNLETLRELYGNS 325
SN TL LYG +
Sbjct: 254 -----------ASSNFNTLISLYGKA 268
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++ G + YN +L Y K G+ +KL+ ++ ME++G+ D +Y ++ Y +
Sbjct: 595 EMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHT 654
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKVNS 121
++ + M+ + + W Y T+ YG DKA+ K ++ I +V
Sbjct: 655 KIAEMEALFHKMQEEGFIPDRWT-YNTMIRTYGYADYPDKAVDTFKMMQDSGIMPDRVT- 712
Query: 122 AYNVILTLYGKYGKKDDVLRIWELY 146
Y +++ + K G + R W L+
Sbjct: 713 -YVMLVAAFEKAGNLLEAAR-WSLW 735
>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 484
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQXXKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 XKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 484
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAXKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 XKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
Length = 654
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 12/240 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYA-DASDHEGIDKI 70
V Y ++++ +Y G F L EMEE G+ D ++ Y + A D EG+
Sbjct: 291 VTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLVIGALCKDGKPFEGMAVF 350
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTL 129
M++ A + IY + + GK G +A+A+ ++ ++ G K++S Y VI+
Sbjct: 351 ERMLKR--GCAANAAIYTALIDSMGKFGREKEAMALFERMKDS--GLKLDSVTYGVIVNC 406
Query: 130 YGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
++GK D+ + + +K + V Y ++I K ++ ++++FEE ++ D
Sbjct: 407 LCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPD 466
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ N LID ++G ++ A L + G + V ++ L G + HK EA+K
Sbjct: 467 SYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKE---HKNEEALK 523
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 104/246 (42%), Gaps = 4/246 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D GL +V Y ++ + G ++ + +E GI + Y + + +
Sbjct: 385 FERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGK 444
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + ++ M A V D Y + +G K G +D A A+ K+ E+ V
Sbjct: 445 AGMVDQSKELFEEMIAKGFVP-DSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVY 503
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y +++ K K ++ L+ W+ + K + +R + S L A +I +E
Sbjct: 504 T-YTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDE 562
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ +T + +I+V C+ G ++A L + KGREI + + R+
Sbjct: 563 LAPMGVIPETAHED-MINVLCKAGRFKQACKLADGIVQKGREIPGRVRTMMINALRKAGN 621
Query: 240 IHKAVE 245
AV+
Sbjct: 622 TDLAVK 627
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 107/254 (42%), Gaps = 3/254 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEME-ENGITYDRYTYCTRLSAYAD 60
+ MR G+ + ++YN +L G + ++ M E+ + D +Y + Y
Sbjct: 207 KAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCR 266
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
A L+ M+ + D V Y T+ + G + + ++ EE+ G +
Sbjct: 267 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 326
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
AY +++ K GK + + ++E + K+ Y +I S+ K + A +FE
Sbjct: 327 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFE 386
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L D+ +++ CR G L++A + KG ++ + L G+ +
Sbjct: 387 RMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAG 446
Query: 239 QIHKAVEAMKKVLA 252
+ ++ E ++++A
Sbjct: 447 MVDQSKELFEEMIA 460
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 120/261 (45%), Gaps = 15/261 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYA 59
+++M + G + TV +N ++ +T + ++ ++ +G+ T+ + +S Y
Sbjct: 272 VERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYC 331
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A E + M A + + V Y + NGYGKVG L A+ + ++ +++
Sbjct: 332 KAGKLEDAMAVYNDMVAS-GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ-MTRLRCPPD 389
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
++ ++ Y + G+ DD LRIW ++ + ++ + +I SL K + + A ++
Sbjct: 390 VVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLN 449
Query: 179 EW------ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
E QA Y N +IDV C+ G +++A + + KG ++ L
Sbjct: 450 ELNLRPDIAPQAFIY-----NPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILII 504
Query: 233 GYRQNSQIHKAVEAMKKVLAA 253
GY S+I +A+ +++ A
Sbjct: 505 GYCMKSRISEAIMFFHEMVEA 525
>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
Length = 658
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 133/309 (43%), Gaps = 36/309 (11%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYA-DASDHEGIDKI 70
V Y ++++ +Y G F L EMEE G+ D ++ Y + A D EG+
Sbjct: 295 VTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLVIGALCKDGKPFEGMAVF 354
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTL 129
M++ A + IY + + GK G +A+A+ ++ ++ G K++S Y VI+
Sbjct: 355 ERMLKR--GCAANAAIYTALIDSMGKFGREKEAMALFERMKDS--GLKLDSVTYGVIVNC 410
Query: 130 YGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
++GK D+ + + +K + V Y ++I K ++ ++++FEE ++ D
Sbjct: 411 LCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPD 470
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ N LID ++G ++ A L + G + V ++ L G + HK EA+K
Sbjct: 471 SYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKE---HKNEEALK 527
Query: 249 -----------KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
AA++TL CL G A ++ L G IP
Sbjct: 528 FWDAMIDKGITPTAAAFRTLAS--------GLCL-----SGKFSRACRILDELAPMGVIP 574
Query: 298 TDLQDKLLD 306
+ +++
Sbjct: 575 ETAHEDMIN 583
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 104/246 (42%), Gaps = 4/246 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D GL +V Y ++ + G ++ + +E GI + Y + + +
Sbjct: 389 FERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGK 448
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + ++ M A V D Y + +G K G +D A A+ K+ E+ V
Sbjct: 449 AGMVDQSKELFEEMIAKGFVP-DSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVY 507
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y +++ K K ++ L+ W+ + K + +R + S L A +I +E
Sbjct: 508 T-YTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDE 566
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ +T + +I+V C+ G ++A L + KGREI + + R+
Sbjct: 567 LAPMGVIPETAHED-MINVLCKAGRFKQACKLADGIVQKGREIPGRVRTMMINALRKAGN 625
Query: 240 IHKAVE 245
AV+
Sbjct: 626 TDLAVK 631
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 107/254 (42%), Gaps = 3/254 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEME-ENGITYDRYTYCTRLSAYAD 60
+ MR G+ + ++YN +L G + ++ M E+ + D +Y + Y
Sbjct: 211 KAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCR 270
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
A L+ M+ + D V Y T+ + G + + ++ EE+ G +
Sbjct: 271 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 330
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
AY +++ K GK + + ++E + K+ Y +I S+ K + A +FE
Sbjct: 331 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFE 390
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L D+ +++ CR G L++A + KG ++ + L G+ +
Sbjct: 391 RMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAG 450
Query: 239 QIHKAVEAMKKVLA 252
+ ++ E ++++A
Sbjct: 451 MVDQSKELFEEMIA 464
>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 104/221 (47%), Gaps = 5/221 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+D + + ++ +++ Y +E + ++ E+G + TY + ++AY
Sbjct: 356 MKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGL 415
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
+ + I ME + V Y+++ + YGK G L A+ +L K +E KG + N
Sbjct: 416 YSKAEDIFGEME-EKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKE--KGCQPNVWI 472
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+++ ++GK V ++W E+ +K + Y ++IS+ +K + E E+ + E+
Sbjct: 473 YNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFR 532
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
D ++ V+ + +++ L+ KL+G +
Sbjct: 533 MNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRL 573
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G + V Y+S++ +Y KTG + L+ +M+E G + + Y + + A
Sbjct: 425 EMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAK 484
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ + ++K+ M+ +A D V Y ++ + Y K +K + E ++ G ++ A
Sbjct: 485 NLKQVEKLWKEMKRK-KIAPDKVSYTSIISAYVKASEFEKCEQYYR--EFRMNGGTIDKA 541
Query: 123 Y-NVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLL 165
+ +++ ++ K + D+++++ K + ++ YR +++L+
Sbjct: 542 FGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYRTALNALM 586
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM++ G +YN +++++ K N ++++ L EM+ I D+ +Y + +SAY
Sbjct: 458 LAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVK 517
Query: 61 ASDHEGIDK 69
AS+ E ++
Sbjct: 518 ASEFEKCEQ 526
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 41/263 (15%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
M++ G T YN ++ + + + L+ EM+E GI D TY T LS A
Sbjct: 377 SSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKA 436
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D +D++L M D P+V + + T+ +GY KVG +D+AL +L+ +E G
Sbjct: 437 GDFAAVDELLGKMIDDGCQPSV----ITFGTLVHGYCKVGKIDEALRILRSMDES--GIH 490
Query: 119 VNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVIS--SLLK-LDDLESA 173
N+ YN ++ K G D + ++ E+ +K+V NV + +LLK L D
Sbjct: 491 PNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPA------NVTTFNALLKGLRDKNMP 544
Query: 174 EKIFEEWES--QALCYDTRIPNFL-IDVYCR-----------NGLLEKAENLVNHEKLKG 219
EK FE + + C+ P+++ +DV +++ E+ + +
Sbjct: 545 EKAFELMDQMREERCF----PDYVTVDVLMEWLPVIGETDRLKRFMQQGEHTASKRIVSD 600
Query: 220 REIHVKSWYYLATGYRQNSQIHK 242
R ++++ ATG + +HK
Sbjct: 601 R---TSAYFHFATGLAETFTLHK 620
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 108/265 (40%), Gaps = 21/265 (7%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V Y++++ T N L HE G + D Y T +S A E + +
Sbjct: 319 VTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASS 378
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M+ + LD Y + G+ + L +A +L++ +E V + YN +L+ K
Sbjct: 379 MK-EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCT-YNTLLSGSCKA 436
Query: 134 GKKDDVLRIWELYKKAV------KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
G D + EL K + V+ G ++ K+ ++ A +I + +
Sbjct: 437 G---DFAAVDELLGKMIDDGCQPSVITFG--TLVHGYCKVGKIDEALRILRSMDESGIHP 491
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
+ I N LID C+ G ++ A L + K K +V ++ L G R + KA E M
Sbjct: 492 NNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELM 551
Query: 248 -----KKVLAAYQT---LVKWKPSV 264
++ Y T L++W P +
Sbjct: 552 DQMREERCFPDYVTVDVLMEWLPVI 576
>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 657
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 133/309 (43%), Gaps = 36/309 (11%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYA-DASDHEGIDKI 70
V Y ++++ +Y G F L EMEE G+ D ++ Y + A D EG+
Sbjct: 294 VTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAYVLVIGALCKDGKPFEGMAVF 353
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTL 129
M++ A + IY + + GK G +A+A+ ++ ++ G K++S Y VI+
Sbjct: 354 ERMLKR--GCAANAAIYTALIDSMGKFGREKEAMALFERMKDS--GLKLDSVTYGVIVNC 409
Query: 130 YGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
++GK D+ + + +K + V Y ++I K ++ ++++FEE ++ D
Sbjct: 410 LCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPD 469
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ N LID ++G ++ A L + G + V ++ L G + HK EA+K
Sbjct: 470 SYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKE---HKNEEALK 526
Query: 249 -----------KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
AA++TL CL G A ++ L G IP
Sbjct: 527 FWDAMIDKGITPTAAAFRTLAS--------GLCL-----SGKFSRACRILDELAPMGVIP 573
Query: 298 TDLQDKLLD 306
+ +++
Sbjct: 574 ETAHEDMIN 582
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 104/246 (42%), Gaps = 4/246 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D GL +V Y ++ + G ++ + +E GI + Y + + +
Sbjct: 388 FERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGK 447
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + ++ M A V D Y + +G K G +D A A+ K+ E+ V
Sbjct: 448 AGMVDQSKELFEEMIAKGFVP-DSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVY 506
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y +++ K K ++ L+ W+ + K + +R + S L A +I +E
Sbjct: 507 T-YTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDE 565
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ +T + +I+V C+ G ++A L + KGREI + + R+
Sbjct: 566 LAPMGVIPETAHED-MINVLCKAGRFKQACKLADGIVQKGREIPGRVRTMMINALRKAGN 624
Query: 240 IHKAVE 245
AV+
Sbjct: 625 TDLAVK 630
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 107/254 (42%), Gaps = 3/254 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEME-ENGITYDRYTYCTRLSAYAD 60
+ MR G+ + ++YN +L G + ++ M E+ + D +Y + Y
Sbjct: 210 KAMRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCR 269
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
A L+ M+ + D V Y T+ + G + + ++ EE+ G +
Sbjct: 270 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 329
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
AY +++ K GK + + ++E + K+ Y +I S+ K + A +FE
Sbjct: 330 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFE 389
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L D+ +++ CR G L++A + KG ++ + L G+ +
Sbjct: 390 RMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAG 449
Query: 239 QIHKAVEAMKKVLA 252
+ ++ E ++++A
Sbjct: 450 MVDQSKELFEEMIA 463
>gi|299473702|emb|CBN78095.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 537
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 4/212 (1%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G+ +YNS + K G +++ S+M +ME++GI +D +TY + + A
Sbjct: 122 RVRGVPVNVYMYNSAISAVSKAGRWKEAMSMMKQMEKDGIAFDEFTYSSVIVACGRGGQP 181
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNSAY 123
++L M +A D + Y G GL ++AL++++K S E + K +AY
Sbjct: 182 RKALELLDEMVQVHGIAPDMICYGAAIQACGDAGLTEEALSLMEKMSREGLLPDK--TAY 239
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N + G+ G+ + L + E+ K ++ N YR + + E A ++ E E
Sbjct: 240 NSAIIACGEKGQWEKALNLLGEMRSKGLRPDQNSYRFAMQACSTGGRWERALQLLHEMEE 299
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
D +D EKA +L++
Sbjct: 300 DGSTPDVAAFQTALDALKDAAQWEKAMDLISE 331
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR GL Y ++ G +E+ L+HEMEE+G T D + T L A DA+
Sbjct: 261 EMRSKGLRPDQNSYRFAMQACSTGGRWERALQLLHEMEEDGSTPDVAAFQTALDALKDAA 320
Query: 63 DHEGIDKILTMME 75
E +++ M+
Sbjct: 321 QWEKAMDLISEMD 333
>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
Length = 844
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 6/142 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++ G TV YN++L+++ K G + + +++ EME+N T D TY ++AY A
Sbjct: 328 ELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAG 387
Query: 63 DH-EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN- 120
+ EG I TM V + V Y TV N YG+ G KAL + + ++ G N
Sbjct: 388 FYEEGATVIDTMTRK--GVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKS--GCVPNV 443
Query: 121 SAYNVILTLYGKYGKKDDVLRI 142
YN IL L GK + +++++I
Sbjct: 444 CTYNSILALLGKKSRSEEMIKI 465
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 139/347 (40%), Gaps = 54/347 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSA-- 57
++M+D GL+ + V YN ML +Y K G +++K+ L+ EM G+ +D +T T +SA
Sbjct: 255 FERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACG 314
Query: 58 ---------------------------------YADASDHEGIDKILTMMEADPNVALDW 84
+ A + IL ME D N LD
Sbjct: 315 REGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEME-DNNCTLDS 373
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW 143
V Y + Y + G ++ ++ KG N+ Y ++ YG+ GK+ L+++
Sbjct: 374 VTYNELVAAYVRAGFYEEGATVIDTMTR--KGVMPNAVTYTTVINAYGRAGKEVKALQLF 431
Query: 144 ELYKKAVKVLNNGYRNVISSLL-KLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCR 201
KK+ V N N I +LL K E KI + C RI N L+ +
Sbjct: 432 NQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRING-CPPNRITWNTLLAMCGD 490
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGY-RQNSQIHKAVEAMKKVLAAYQTLVK- 259
G + ++ K G E ++ L + Y R S++ A Y ++K
Sbjct: 491 KGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAA--------KMYDEMMKA 542
Query: 260 -WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
+ P + A L+ GD AE+ + + +KGF P + L+
Sbjct: 543 GFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLM 589
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/333 (20%), Positives = 138/333 (41%), Gaps = 45/333 (13%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G YNS+L L K E++ ++ +M NG +R T+ T L+ D
Sbjct: 433 QMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKG 492
Query: 63 DHEGIDKILTMMEADPNVALDWV--IYATVGNGYGKVGL-LDKALA---MLK-------- 108
H+ ++ + M+ N + + T+ + YG+ G LD A M+K
Sbjct: 493 KHKFVNHVFREMK---NCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCAT 549
Query: 109 ---------------KSEEQI------KGAKVN-SAYNVILTLYGKYGKKDDVLRIW-EL 145
K+ E + KG K N ++++++L Y K G + RI ++
Sbjct: 550 TYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDI 609
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
Y + R +I + K + E+ FEE D I N ++ ++ +N +
Sbjct: 610 YDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMY 669
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE 265
E+A+ +++ + G + + ++ L Y + + KA E +K ++ + ++ P +
Sbjct: 670 ERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGES-----PDLV 724
Query: 266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
S + F +G + A + + +G P
Sbjct: 725 SYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPC 757
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/343 (18%), Positives = 137/343 (39%), Gaps = 63/343 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D +V YN ++ Y + G +E+ +++ M G+ + TY T ++AY
Sbjct: 361 LKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGR 420
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A ++ M+ PNV Y ++ GK ++ + +L S+ +I G
Sbjct: 421 AGKEVKALQLFNQMKKSGCVPNVC----TYNSILALLGKKSRSEEMIKIL--SDMRINGC 474
Query: 118 KVNS------------------------------------AYNVILTLYGKYGKKDDVLR 141
N +N +++ YG+ G + D +
Sbjct: 475 PPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAK 534
Query: 142 IW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
++ E+ K Y ++++L + D ++AE + + ++ + + ++ Y
Sbjct: 535 MYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYA 594
Query: 201 RNGLLEKAENLVNHEKLKGREIH----VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQT 256
+ G + E + G++I+ SW L T N + +AV M++ A++
Sbjct: 595 KGGNVRGLERI-------GKDIYDGQIFPSWVLLRTLILANFKC-RAVRGMER---AFEE 643
Query: 257 LVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
L+K +KP + + L F A+ ++L+ + G P
Sbjct: 644 LMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQP 686
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V++NSML ++ K +E+ ++ + E+G+ D TY + ++ YA + ++IL
Sbjct: 654 VIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKG 713
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKVNSAYNVILTLY-- 130
+ + D V Y T+ G+ + GL+ +A+ ++ SE +G YN ++ Y
Sbjct: 714 L-IKSGESPDLVSYNTIIKGFCRQGLMQEAIRVM--SEMTTRGICPCIFTYNTFVSGYAG 770
Query: 131 -GKYGKKDDVL 140
G + + D+V+
Sbjct: 771 RGMFAEVDEVI 781
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 12/295 (4%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
++G+ TV YN +L L + G ++ SL+ +ME G D +Y + Y E
Sbjct: 245 EVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQV---E 301
Query: 66 GIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ K+L +ME L + Y ++ + K G + +A +L+ + Q + N Y
Sbjct: 302 QLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQ-RIFPDNVVY 360
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+++ +GK G +++ E+ +K + Y ++I L + + A K+F E S
Sbjct: 361 TTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLS 420
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ L D LID YC+ G +++A +L N KG +V ++ L G + ++
Sbjct: 421 KGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDI 480
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A E + ++ +P+V + A ++ G+I A +E ++ GF P
Sbjct: 481 ANELLHEMSEK-----GLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFP 530
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 140/324 (43%), Gaps = 10/324 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++++ GL YNS++ KTG + + ++ M+ I D Y T +S +
Sbjct: 310 MEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGK 369
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + K+ M+ + D+V Y ++ +G + G + +A + SE KG K +
Sbjct: 370 SGNVSVEYKLFDEMKRK-KIVPDFVTYTSMIHGLCQAGKVVEARKLF--SEMLSKGLKPD 426
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y ++ Y K G+ + + ++ +K + Y ++ L K +++ A ++
Sbjct: 427 EVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLH 486
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + L + N LI+ C+ G +E+A L+ L G ++ + Y +
Sbjct: 487 EMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMG 546
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++ KA E ++ +L +P++ + ++ F G + E I+ + DKG +P
Sbjct: 547 EMAKAHELLRIMLDK-----GLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPN 601
Query: 299 DLQDKLLDNVQNGKSNLETLRELY 322
L ++N+ E+Y
Sbjct: 602 ATTFNSLMKQYCIRNNMRATIEIY 625
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 109/244 (44%), Gaps = 7/244 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + GL V Y +++ K G + + L+HEM E G+ + TY ++
Sbjct: 452 QMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVG 511
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
+ E K++ M+ D + Y T+ + Y K+G + KA +L+ + KG +
Sbjct: 512 NIEQAVKLMEEMDL-AGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLD--KGLQPTIV 568
Query: 122 AYNVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+NV++ + G +D R+ W L K + + +++ +++ + +I++
Sbjct: 569 TFNVLMNGFCMSGMLEDGERLIKWML-DKGIMPNATTFNSLMKQYCIRNNMRATIEIYKG 627
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+Q + DT N LI +C+ +++A L KG + S+ L G+ + +
Sbjct: 628 MHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKK 687
Query: 240 IHKA 243
+A
Sbjct: 688 FEEA 691
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 42/236 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + GL YN+++ K GN E+ LM EM+ G D TY T + AY
Sbjct: 485 LHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCK 544
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK------------ 108
+ ++L +M D + V + + NG+ G+L+ ++K
Sbjct: 545 MGEMAKAHELLRIM-LDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNAT 603
Query: 109 ----------------KSEEQIKGAKV------NSAYNVILTLYGKYGKKDDVLRIWELY 146
+ E KG + YN+++ + K ++ W L+
Sbjct: 604 TFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIK---GHCKARNMKEAWFLH 660
Query: 147 KKAVK----VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
K+ V+ + Y ++I K E A K+FEE + + I + +DV
Sbjct: 661 KEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDV 716
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 29/264 (10%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD--------HE 65
V Y SM+ + G + L EM G+ D TY + Y A + ++
Sbjct: 393 VTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQ 452
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYN 124
++K LT PNV V Y + +G K G +D A +L + E KG + N YN
Sbjct: 453 MVEKGLT-----PNV----VTYTALVDGLCKCGEVDIANELLHEMSE--KGLQPNVCTYN 501
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K G + +++ E A + Y ++ + K+ ++ A ++ +
Sbjct: 502 ALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDK 561
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW------YYLATGYRQN 237
L N L++ +C +G+LE E L+ KG + ++ Y + R
Sbjct: 562 GLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRAT 621
Query: 238 SQIHKAVEAMKKV--LAAYQTLVK 259
+I+K + A V Y L+K
Sbjct: 622 IEIYKGMHAQGVVPDTNTYNILIK 645
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
D + +A ++F E+ +C++T N ++ + C+ G +++A +L+ + +G V S
Sbjct: 230 FDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVS 289
Query: 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
+ + GY Q Q+ K ++ M+++ KP+ + + + + G + AE
Sbjct: 290 YSVIVDGYCQVEQLGKVLKLMEELQRK-----GLKPNQYTYNSIISFLCKTGRVVEAEQV 344
Query: 287 IELLNDKGFIPTDL 300
+ ++ ++ P ++
Sbjct: 345 LRVMKNQRIFPDNV 358
>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 146/338 (43%), Gaps = 26/338 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K++D G T YNS++ L+ G K + ME G D TY + + A
Sbjct: 185 FKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAK 244
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + K+ M+ + N+ ++++A++ + GK G LD ++ K +++G +
Sbjct: 245 SGRLDAAFKLFQEMK-EKNLRPSFLVFASLVDSMGKAGRLDTSM----KVYMEMQGFGLR 299
Query: 121 SAYNVILTL---YGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKI 176
+ + ++L + K GK + LRIW+ KKA N G Y V+ S K LE+A +
Sbjct: 300 PSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSV 359
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F + E + L++++ +G ++ A L N G + ++ L T
Sbjct: 360 FSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLAN 419
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG-- 294
K V+ KVL + + + V + + Y KD G + A ++ + G
Sbjct: 420 K----KLVDVAAKVLLEMKAM-GFSVDVSASDVLMVYIKD-GSVDLALRWLRFMGSSGIR 473
Query: 295 ---FIPTDLQDKLLDN--VQNGKSNLETLRELYGNSLA 327
FI L + + N ++ K LET Y NS A
Sbjct: 474 TNNFIIRQLFESCMKNGLYESAKPLLET----YVNSAA 507
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 129/302 (42%), Gaps = 10/302 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M G+ V Y ++L K G + + + M ++GI+ ++ Y + Y
Sbjct: 452 LNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIK 511
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E KIL M + N+ D ++Y ++ G+ L++ +L+ E + +G N
Sbjct: 512 AERMEDAMKILKQM-TECNIKPDLILYGSIIWGHCSQRKLEETKLILE--EMKSRGISAN 568
Query: 121 SAYN-VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ I+ Y K GK D L + E+ V+ Y +I L K +E A F
Sbjct: 569 PVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFC 628
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
S L + + LID C+N +E A+ L + + +G + ++ L G ++
Sbjct: 629 RMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHG 688
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ +A+ VL + T + + + + + F G++ A F + +KG +P
Sbjct: 689 NLQEAL-----VLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 743
Query: 299 DL 300
++
Sbjct: 744 EV 745
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 18/258 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+ R L AR+ N +L K+GN + + ++M GI +TY +
Sbjct: 245 MRNFRTLPKARSC---NFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCK 301
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E ++ M + ++ D V Y ++ +GYGKVG L++ ++ + ++ +
Sbjct: 302 EGDLENSRRLFVQMR-EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD-VGCVPDI 359
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
YN ++ Y K+ K R +E + ++ NNG Y +I + K ++ A
Sbjct: 360 ITYNGLINCYCKFEKMP---RAFEYFS---EMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 413
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
K+F + L + LID C+ G L +A L+N G ++++ ++ L G
Sbjct: 414 IKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDG 473
Query: 234 YRQNSQIHKAVEAMKKVL 251
+ ++ +A E + +L
Sbjct: 474 LCKAGRMIEAEEVFRSML 491
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 104/245 (42%), Gaps = 5/245 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+A + YN M+ K G+ E L +M E G++ D TY + + Y E +
Sbjct: 284 GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEV 343
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI 126
+ M+ D D + Y + N Y K + +A SE + G K N Y+ +
Sbjct: 344 ASLFNEMK-DVGCVPDIITYNGLINCYCKFEKMPRAFEYF--SEMKNNGLKPNVVTYSTL 400
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ + K G ++++ ++ + N Y ++I + K +L A K+ + +
Sbjct: 401 IDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGV 460
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ L+D C+ G + +AE + G + + + L GY + ++ A++
Sbjct: 461 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 520
Query: 246 AMKKV 250
+K++
Sbjct: 521 ILKQM 525
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 102/224 (45%), Gaps = 11/224 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ G++ V+ +++ Y+K G + EM++ G+ TYC +
Sbjct: 557 LEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCK 616
Query: 61 ASDHE-GIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A E +D M+ PNVA +Y ++ +G K ++ A + E Q +G
Sbjct: 617 AGIVELAVDYFCRMLSLGLQPNVA----VYTSLIDGLCKNNCIESAKKLF--DEMQCRGM 670
Query: 118 KVN-SAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ +A+ ++ K+G ++ ++ I + + A++ + Y +++S + +L A K
Sbjct: 671 TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARK 730
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
F E + + + + L+ Y + G L++A L N + G
Sbjct: 731 FFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMG 774
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +I L K DLE++ ++F + L D N LID Y + G LE+ +L N K
Sbjct: 292 YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK 351
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK---WKPSVESLAACLDY 273
G + ++ L Y + ++ +A E Y + +K KP+V + + +D
Sbjct: 352 DVGCVPDIITYNGLINCYCKFEKMPRAFE--------YFSEMKNNGLKPNVVTYSTLIDA 403
Query: 274 FKDEGDIGGAENFIELLNDKGFIPTDL 300
F EG + GA + G +P +
Sbjct: 404 FCKEGMMQGAIKLFVDMRRTGLLPNEF 430
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 102/253 (40%), Gaps = 7/253 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR+ G+ V YN +++ G+ L+ ME NG+ D+YTY + A
Sbjct: 358 LDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCK 417
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + +E + + V + TV NG K G D A L E I
Sbjct: 418 TGKVDEACSLFDGLEYR-GIRPNSVTFNTVINGLCKAGKFDVACTFL---ENMISAGYAP 473
Query: 121 SAYN---VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y I L G ++ + I E+ +K VK Y VI+ L + A +I+
Sbjct: 474 DTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIW 533
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ SQ D + YC G L++AEN+V K + ++ L G+
Sbjct: 534 GQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSI 593
Query: 238 SQIHKAVEAMKKV 250
Q +AV +K +
Sbjct: 594 GQTDRAVTILKHM 606
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 17/223 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM++LG TT Y +++ L+ + E+ + +++EM ++G+ T ++AY
Sbjct: 253 LQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCR 312
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
G ++ M +PNV W Y + G+ G + KA+A+L + E
Sbjct: 313 EGRMSGAVRVFESMRFKGCEPNV---WT-YNAIVQGFCNAGKVYKAMALLDQMRECGVEP 368
Query: 118 KVNSAYNVIL---TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
V + YN+++ + G G +LR+ E + Y +I +L K ++ A
Sbjct: 369 DVVT-YNLLIRGQCIDGHIGSAFRLLRLME--GNGLAADQYTYNVLIDALCKTGKVDEAC 425
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA----ENLVN 213
+F+ E + + ++ N +I+ C+ G + A EN+++
Sbjct: 426 SLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMIS 468
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 46/309 (14%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R A T YN++++ + + + M +G D +T+ + + Y
Sbjct: 121 RHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQL 180
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ---IKGAKVNS 121
E + M + D V YA + G+ + G +D+AL + ++ + A V
Sbjct: 181 EVAHDLFCKMPFR-GFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKG 239
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL-------ESAE 174
+ G+ ++ L + + K+ G+R + L DL E AE
Sbjct: 240 LCDA--------GRGEEGLCMLQKMKEL------GWRPTTRAYAALVDLWCREQKAEEAE 285
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
KI E L +++ YCR G + A + + KG E +V ++ + G+
Sbjct: 286 KILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGF 345
Query: 235 RQNSQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
+++KA+ + ++ + Y L++ C+D G IG A
Sbjct: 346 CNAGKVYKAMALLDQMRECGVEPDVVTYNLLIR--------GQCID-----GHIGSAFRL 392
Query: 287 IELLNDKGF 295
+ L+ G
Sbjct: 393 LRLMEGNGL 401
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 38/221 (17%)
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNG-YRNVISSLLKLDDLESAEK-- 175
+ + +LT + +Y +LR++ +Y+ A Y +I +L + DL A++
Sbjct: 93 DRPFRSLLTHFSRYALTPLMLRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYL 152
Query: 176 ---IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
+ W A + N LI YCR LE A +L +G S+ L
Sbjct: 153 SLMVRSGWRPDAFTF-----NSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIE 207
Query: 233 GYRQNSQIHKAVEAMKKV----LAAYQTLVK----------------------WKPSVES 266
G+ + +I +A+E +++ + + LVK W+P+ +
Sbjct: 208 GFCEAGRIDEALELFREMTQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRA 267
Query: 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDN 307
AA +D + E AE + + D G +P + ++ N
Sbjct: 268 YAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVN 308
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 110/269 (40%), Gaps = 18/269 (6%)
Query: 35 LMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD---PNVALDWVIYATVG 91
L H M +G+ + TY ++ + + + + MM PN + Y +
Sbjct: 387 LFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTS----SYNELI 442
Query: 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNS--AYNVILTLYGKYGKKDDVLRIWELYK-K 148
GY +G +KA++ML +KG + YN+I+ Y G D +R+ EL K
Sbjct: 443 RGYCTIGDTEKAMSMLTN---MLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKAN 499
Query: 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ Y +IS K+ +E A +F E + LC + LI YC++ L+ A
Sbjct: 500 GCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCA 559
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268
++ K G +V+++ L G + + A E K +L K P V + +
Sbjct: 560 ARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEE-----KISPDVVTYS 614
Query: 269 ACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ + G I A + G +P
Sbjct: 615 TVINGLCNNGAIPLALEMFNKMVKHGCLP 643
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 131/300 (43%), Gaps = 18/300 (6%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q +R+ GL ++YNS++ K GN +S+++++ ++G+ D +TY + + Y
Sbjct: 218 QILRE-GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRN 276
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + +I M+ +PN A Y+T+ NG G +++AL + +
Sbjct: 277 RDLDSAFEIFNRMDEEGCEPNAA----TYSTLINGLCNSGRVNEALDFISEMTRHGVLPT 332
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
V++ I+ L G+ +D +I+ ++ KK K Y ++IS ++ + A +F
Sbjct: 333 VHTFTAPIVALC-DMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG-QRVSRM--AIGLF 388
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ +T N L++V N ++ A + N G + S+ L GY
Sbjct: 389 HRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTI 448
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KA+ + +L T P++ + + + D GD A +EL+ G P
Sbjct: 449 GDTEKAMSMLTNMLKGRPT-----PTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQP 503
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 133/307 (43%), Gaps = 13/307 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T YN +++ Y G+ EK S++ M + T TY + Y D+ D +
Sbjct: 430 GCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVA 489
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
++L +M+A+ +W Y + +G+ K+ ++ A M +E +G N Y +
Sbjct: 490 IRVLELMKANGCQPDEWS-YTELISGFCKISKMELASGMF--NEMMDRGLCPNEVTYTAL 546
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
++ Y K K D R+ E K++ N Y +I L K ++ AE++ + + +
Sbjct: 547 ISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKI 606
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D + +I+ C NG + A + N G ++ ++ L Q ++ +A E
Sbjct: 607 SPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEE 666
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ--DK 303
++ Q L+ P + ++ G + A +F+ + + G PT LQ D
Sbjct: 667 MFSEL--KKQGLI---PDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPT-LQTYDV 720
Query: 304 LLDNVQN 310
L+ +QN
Sbjct: 721 LIKGLQN 727
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 97/242 (40%), Gaps = 36/242 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D GL V Y +++ Y K + ++ M+ +G + TY + +
Sbjct: 530 EMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQN 589
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ G +++ +M + ++ D V Y+TV NG G + AL M K
Sbjct: 590 NFSGAEELCKVM-LEEKISPDVVTYSTVINGLCNNGAIPLALEMFNK------------- 635
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
K+G ++ + Y ++I +L + +E AE++F E +
Sbjct: 636 -------MVKHGCLPNL---------------HTYSSLIQALGQEGRVEEAEEMFSELKK 673
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
Q L D +I+V +G +++A + + G + ++++ L G + HK
Sbjct: 674 QGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHK 733
Query: 243 AV 244
V
Sbjct: 734 LV 735
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/413 (20%), Positives = 165/413 (39%), Gaps = 89/413 (21%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ VVY+ +L+ Y K G +E + + EM GI D Y + D
Sbjct: 171 LREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMY----TGLID 226
Query: 61 ASDHEGIDKILT-----MMEA--DPN-------------------------------VAL 82
+ EG K T MME +PN VAL
Sbjct: 227 SLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVAL 286
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA----YNVILTLYGKYGKKDD 138
D V Y T+ G V +D+A+ +L EE I G + +N ++ K G+
Sbjct: 287 DAVTYNTLITGLSGVLEMDEAMGLL---EEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQ 343
Query: 139 VLRIWELYKKAVKVLNNGYRN-VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
++ ++ + N N +I LL++ ++ A ++ +E S L D+ + LI+
Sbjct: 344 AFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILIN 403
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV------- 250
+C+ +++AE+L++ + G E + + L + + +A ++
Sbjct: 404 GFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLD 463
Query: 251 LAAYQTLVKWK----------------------PSVESLAACLDYFKDEGDIGGAENFIE 288
+ AY T++ P + + ++ F + GD+G AE ++
Sbjct: 464 VVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLK 523
Query: 289 LLNDKGFIPTDLQDKLLDNVQNG-------KSNLETLRELYGNSLAGNEETLS 334
+ GF+P + D++ G + LE +RE+ +A + + +S
Sbjct: 524 QMTASGFVP---DVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIIS 573
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 109/251 (43%), Gaps = 7/251 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ G+ V Y ++++ + +K L+ EM E+GI + Y L Y
Sbjct: 136 LRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCK 195
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E + K+ M + D V+Y + + + G + KA ++ K E +G + N
Sbjct: 196 AGRWECVSKVFEEMSGR-GIEPDVVMYTGLIDSLCREGKVKKATQVMDKMME--RGLEPN 252
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ K G + + + + +K V + Y +I+ L + +++ A + E
Sbjct: 253 VVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLE 312
Query: 179 EWESQALCYDTRIPNF--LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E + + F +I C+ G + +A + + G ++ ++ L G +
Sbjct: 313 EMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLR 372
Query: 237 NSQIHKAVEAM 247
++ KA+E M
Sbjct: 373 VHKVKKAMELM 383
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 124/296 (41%), Gaps = 22/296 (7%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V YN+++ ++K G K SL HEM G+ D TY + A A + + +L
Sbjct: 265 VVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLR 324
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY-NVILTLYG 131
M + D V Y + +GY +G L +A M +K + +G N N L
Sbjct: 325 QMTTN-GAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKS--RGLIPNIVICNSFLASLC 381
Query: 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE-------KIFEEWESQA 184
K+G+ + I++ + G++ I S L ++E +F +S
Sbjct: 382 KHGRSKEAAEIFD------SMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNG 435
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ D R+ N LI Y + G+++ A + + +G V ++ + + + + ++ A+
Sbjct: 436 IAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAM 495
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
E +++A +P+ + + F G + A+ + + +KG D+
Sbjct: 496 EKFNQMVAR-----GIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDI 546
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 123/286 (43%), Gaps = 39/286 (13%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM+ GL V+ NS L K G ++ + M G D +YCT L YA
Sbjct: 359 RKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASE 418
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + M+++ +A D ++ + + Y K G++D A+ + + ++Q V +
Sbjct: 419 GWFADMIGLFNSMKSN-GIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVT 477
Query: 122 AYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y+ +++ + + G+ D + + ++ + ++ Y ++I L A+++ E
Sbjct: 478 -YSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEM 536
Query: 181 ESQ---------------ALCYDTRI----------------PNF-----LIDVYCRNGL 204
++ +LC D R+ P+ LID YC G
Sbjct: 537 INKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGK 596
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
++KA +++ ++ G E + ++ L GY +N +I+ + +++
Sbjct: 597 MDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREM 642
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 14/235 (5%)
Query: 8 GLARTTVVYNSMLK-LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
GL + +++LK L Y E ++ L+H M E G + ++Y L D S +
Sbjct: 187 GLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQR 246
Query: 67 IDKILTMM-----EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ MM PNV V Y TV +G+ K G KA ++ + Q G K +
Sbjct: 247 ALDLFQMMAKEGGACSPNV----VAYNTVIHGFFKEGETGKACSLFHEMTRQ--GVKPDV 300
Query: 122 A-YNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN+I+ K D L + ++ + Y +I L L+ A K+F +
Sbjct: 301 VTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRK 360
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+S+ L + I N + C++G ++A + + KG + + S+ L GY
Sbjct: 361 MKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGY 415
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 100/253 (39%), Gaps = 36/253 (14%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M G+ V YN ++ K +K + ++ +M NG D TY + YA
Sbjct: 289 HEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATL 348
Query: 62 SDHEGIDKILTMMEAD---PNVAL-------------------------------DWVIY 87
+ K+ M++ PN+ + D V Y
Sbjct: 349 GRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSY 408
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELY 146
T+ +GY G + + + A +N+++ Y K G DD + I+ E+
Sbjct: 409 CTLLHGYASEGWFADMIGLFNSMKSNGIAADCR-VFNILIHAYAKRGMVDDAMLIFTEMQ 467
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
++ V Y VIS+ ++ L A + F + ++ + +T + + +I +C +G L
Sbjct: 468 QQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLV 527
Query: 207 KAENLVNHEKLKG 219
KA+ LV+ KG
Sbjct: 528 KAKELVSEMINKG 540
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 7/224 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M +G+ V Y+++L Y+K G +L EM+ G+ + TY L+
Sbjct: 604 LDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663
Query: 61 ASDHEGI-DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A K M+E+ V + IY + G + D+A+ + +K +
Sbjct: 664 AGRTVAARKKFHEMIESGTTVTVS--IYGIILGGLCRNNCADEAIILFQKLGTMNVKFSI 721
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
+I +Y K +K++ ++ + + N + Y +I +LLK +E A +F
Sbjct: 722 TILNTMINAMY-KVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFS 780
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
E + +R+ N +I + G + KA N ++ K+ G+ I
Sbjct: 781 SMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLS--KVDGKRI 822
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 130/302 (43%), Gaps = 16/302 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G+ V YNS++ + G + L+ +M + GI + T+ + A+
Sbjct: 212 QMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVG 271
Query: 63 ---DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + + K++ M P+V Y + NG G LD+A M E G
Sbjct: 272 KIMEAKELYKVMIQMSVYPDV----FTYTALINGLCTYGRLDEARQMFYLMESN--GYYP 325
Query: 120 NSA-YNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N Y ++ + K + +D +I +E+ +K + Y +I + + A+++F
Sbjct: 326 NEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVF 385
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ S+ D R N L+D C NG +EKA + + + + +I++ ++ + G +
Sbjct: 386 NQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKV 445
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ A + + + KP+V + + F G I A+ + + + GF+P
Sbjct: 446 GKVEDAFDLFCSLFSK-----GMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLP 500
Query: 298 TD 299
+
Sbjct: 501 NE 502
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 9/218 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M G+ V+YN+++ + + G + + ++ +M E G+ D T+ +R+SA
Sbjct: 205 LNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCK 264
Query: 61 ASDHEGIDKILTMMEADPNVAL---DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+I + ME D + L + + Y + G+ KVGLL+ A + + E A
Sbjct: 265 EGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLA 324
Query: 118 KVNSAYNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ S YN+ L +GK+ + + VL+ ++ K + Y ++ L KL L A+
Sbjct: 325 SLQS-YNIWLQGLVRHGKFIEAETVLK--QMTDKGIGPSIYSYNILMDGLCKLGMLSDAK 381
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
I + +C D L+ YC G ++ A++L+
Sbjct: 382 TIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLL 419
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 14/292 (4%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+ +YN +L+ K E + L +M GI YT+ + A D+S + ++
Sbjct: 111 SVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELF 170
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLY 130
M + + + + GY K GL DK L +L E G N YN I++ +
Sbjct: 171 DEM-PEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESF--GVLPNKVIYNTIVSSF 227
Query: 131 GKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQ---ALC 186
+ G+ DD ++ E ++ V + + + IS+L K + A +IF + E L
Sbjct: 228 CREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLP 287
Query: 187 YDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
I N ++ +C+ GLLE A+ L + ++S+ G ++ + +A
Sbjct: 288 RPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAET 347
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+K++ T PS+ S +D G + A+ + L+ G P
Sbjct: 348 VLKQM-----TDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCP 394
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 69/365 (18%), Positives = 139/365 (38%), Gaps = 45/365 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G+ + YN ++ K G +++ M+ NG+ D TY L Y
Sbjct: 349 LKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCS 408
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +L M + PN ++ ++ K+G + +A +L+K E+ G
Sbjct: 409 VGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSL----WKMGRISEAEELLRKMNEKGYGL 464
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNG----------------- 156
+ N+I+ G+ D + I + + A+ L N
Sbjct: 465 DTVTC-NIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPD 523
Query: 157 ---YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
Y +++ L K A+ +F E + L D+ N I +C+ G + A ++
Sbjct: 524 LITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLK 583
Query: 214 HEKLKGREIHVKSWYYLATGY---RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270
+ KG ++++ L G Q +IH ++ MK+ P++ +
Sbjct: 584 DMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKE--------KGISPNICTYNTA 635
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY--GNSLAG 328
+ Y + + A N ++ + K P K L + + +E++ S+ G
Sbjct: 636 IQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICG 695
Query: 329 NEETL 333
+E L
Sbjct: 696 QKEGL 700
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 134/326 (41%), Gaps = 35/326 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G+ +V YN M+K + K G +++D + +MEE+G D TY T +S +
Sbjct: 360 IEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCK 419
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +++ M + +D V T+ + LD+A +L + +G V+
Sbjct: 420 VGKMDEAFRLMDEM-GRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARR--RGYFVD 476
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y ++ Y K+ K LR+W E+ +K + Y ++I+ L ++ A +
Sbjct: 477 EVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLD 536
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E L D N +I YC+ G +EKA N K + V + L G +
Sbjct: 537 ELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEG 596
Query: 239 QIHKAVEAMKKVLA--------AYQTLV----------------------KWKPSVESLA 268
+ KA++ ++ +Y T++ K P +
Sbjct: 597 MLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYN 656
Query: 269 ACLDYFKDEGDIGGAENFIELLNDKG 294
A L D G + AE FI + +KG
Sbjct: 657 AILGGLTDAGRMKDAEEFISKIAEKG 682
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 123/280 (43%), Gaps = 42/280 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY------CTRLS 56
KMRD G + YN++L K G + L+ +M+ G+ +R T+ C RL
Sbjct: 222 KMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLG 281
Query: 57 AYADASD-------------------------HEG-IDKILTMMEADPNVAL--DWVIYA 88
+A++ +G I + + + E N+ L D V Y
Sbjct: 282 WLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYN 341
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDV---LRIWE 144
T+ NG + G ++ ++++ E +G K NS YNV++ + K GK D+V +R E
Sbjct: 342 TLINGCFEHGSSEEGFKLIEEMEG--RGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKME 399
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
++ Y +IS K+ ++ A ++ +E + L D N ++ CR
Sbjct: 400 ESGCLPDIVT--YNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERK 457
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
L++A +L+ + +G + S+ L GY ++ + +A+
Sbjct: 458 LDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQAL 497
>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 104/221 (47%), Gaps = 5/221 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+D + + ++ +++ Y +E + ++ E+G + TY + ++AY
Sbjct: 356 MKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGL 415
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
+ + I ME + V Y+++ + YGK G L A+ +L K +E KG + N
Sbjct: 416 YSKAEDIFGEME-EKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKE--KGCQPNVWI 472
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+++ ++GK V ++W E+ +K + Y ++IS+ +K + E E+ + E+
Sbjct: 473 YNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFR 532
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
D ++ V+ + +++ L+ KL+G +
Sbjct: 533 MNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRL 573
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G + V Y+S++ +Y KTG + L+ +M+E G + + Y + + A
Sbjct: 425 EMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAK 484
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ + ++K+ M+ +A D V Y ++ + Y K +K + E ++ G ++ A
Sbjct: 485 NLKQVEKLWKEMKRK-KIAPDKVSYTSIISAYVKASEFEKCEQYYR--EFRMNGGTIDKA 541
Query: 123 Y-NVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLL 165
+ +++ ++ K + D+++++ K + ++ YR +++L+
Sbjct: 542 FGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYRTALNALM 586
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM++ G +YN +++++ K N ++++ L EM+ I D+ +Y + +SAY
Sbjct: 458 LAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVK 517
Query: 61 ASDHEGIDK 69
AS+ E ++
Sbjct: 518 ASEFEKCEQ 526
>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Cucumis sativus]
Length = 830
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/356 (20%), Positives = 146/356 (41%), Gaps = 37/356 (10%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+ V N+++ + K G + S M +NG+ +D ++Y L A +
Sbjct: 270 SIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFT 329
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
ME V D V Y T+ G+ +GL+ A +++K Q + + Y ++ +
Sbjct: 330 DDMEKH-GVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVT-YTTLICGHC 387
Query: 132 KYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
+ G ++ L++ E + K+ Y ++S L K+ +E A +F+E E+ L D
Sbjct: 388 QMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFI 447
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA------- 243
+ + LI C+ G +++A L +LK + H + + G +N I +A
Sbjct: 448 VYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTW 507
Query: 244 ---------------------VEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDI 280
++ + + + Y +++ PSV + ++ F GD+
Sbjct: 508 TRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDL 567
Query: 281 GGAENFIELLNDKGFIPTDLQDKLLDN----VQNGKSNLETLRELYGNSLAGNEET 332
A +E++ KG +P+ + L N V N + L E+ N++ T
Sbjct: 568 MEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVT 623
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 129/301 (42%), Gaps = 20/301 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + G+ + V +N+++ + + G+ + ++ + G+ TY T ++AY +
Sbjct: 541 KMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVG 600
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ + + L MEA+ V V Y + G + + ++L +L+ KG +S
Sbjct: 601 NMQEMFHFLHEMEANAVVP-THVTYTVLIKGLCRQNKMHESLQLLEYMYA--KGLLPDSV 657
Query: 123 -YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG------YRNVISSLLKLDDLESAEK 175
YN I+ + K GK ++ + +LY + +L+N Y+ +I++L DL+ ++
Sbjct: 658 TYNTIIQCFCK-GK--EITKALQLYN--MMLLHNCDPTQVTYKVLINALCIFGDLKDVDR 712
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E + + +I +C G + KA N KG I ++ + +
Sbjct: 713 MVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLC 772
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ I +A +L+ T P E L+ F +G+ F+ ++ GF
Sbjct: 773 KRGLITEAKYFFVMMLSEGVT-----PDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSGF 827
Query: 296 I 296
I
Sbjct: 828 I 828
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 135/335 (40%), Gaps = 45/335 (13%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL + YN +L G+ ++ +ME++G+ D TY T + G
Sbjct: 301 GLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGA 360
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI 126
K++ M + D V Y T+ G+ ++G +++AL + + E +G K+N YN++
Sbjct: 361 RKVVQKMLLQ-GLNPDLVTYTTLICGHCQMGNIEEALKL--RQETLSRGFKLNVIFYNML 417
Query: 127 LTLYGKYGKKDDVL--------------------------------RIWELYK----KAV 150
L+ K G+ ++ L R ++LY+ K
Sbjct: 418 LSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRK 477
Query: 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
+ R V+ L K ++ A F+ W L D + N +ID Y R + +A
Sbjct: 478 FPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQ 537
Query: 211 LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270
L +G V ++ L G+ + + +A +K+L + L PSV +
Sbjct: 538 LYYKMIERGITPSVVTFNTLINGFCRRGDLMEA----RKMLEVIR-LKGLVPSVVTYTTL 592
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
++ + + G++ +F+ + +PT + +L
Sbjct: 593 MNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVL 627
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 103/241 (42%), Gaps = 15/241 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM GL V Y +++ + + GN E+ L E G + Y LS
Sbjct: 364 VQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCK 423
Query: 61 ASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
I++ LT+ + + L D+++Y+ + +G K G + +A + ++ + K
Sbjct: 424 VGR---IEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPH 480
Query: 119 VNSAYNVILTLY--GKYGKKDDVLRIW---ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ V+L L+ G + + W +L + V Y +I ++LD + A
Sbjct: 481 HFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVL-----YNIMIDGYVRLDGIAEA 535
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+++ + + + N LI+ +CR G L +A ++ +LKG V ++ L
Sbjct: 536 MQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNA 595
Query: 234 Y 234
Y
Sbjct: 596 Y 596
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/373 (22%), Positives = 142/373 (38%), Gaps = 88/373 (23%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-- 59
KM + G + TV YN+++ K N E+ L+ EM G D TY T LS
Sbjct: 69 HKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRM 128
Query: 60 --------------------DASDHEGIDKIL--------------TMMEADPNVALDWV 85
D + G+ L TM AD VA D +
Sbjct: 129 GKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLI 188
Query: 86 IYATVGNGYGKVGLLDKALAMLK----------------------------KSEEQIK-- 115
Y T+ +G+ +V D+A+ + K ++EE K
Sbjct: 189 TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248
Query: 116 ---GAKVNSA-YNVILTLYGKYGKKDDVLRIWELYKKAVK-------VLNNGYRNVISSL 164
G N A Y+++L+ + + G ++ R ELY++ + +L N VI L
Sbjct: 249 VDSGCAPNGATYSIVLSGHCRVG---NMARCLELYEEMTEKRFSPDVLLCNA---VIDML 302
Query: 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV 224
K ++ A K+ EE D N L+D C+ L++KA L + G +
Sbjct: 303 CKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDI 362
Query: 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284
S+ + G + +++H A +VL K P V + +D G + A+
Sbjct: 363 VSYSVVLNGLCKTNKVHDA-----RVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 417
Query: 285 NFIELLNDKGFIP 297
+ ++++++ +P
Sbjct: 418 DLLDVMSEHNVLP 430
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 27/291 (9%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + G V Y++++ KTG + ++ EM E G+ D TY + A
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSA 122
+ D++ M + + + V Y + NG K +++A +L+ E KG + N
Sbjct: 61 VDEADELFHKM-IERGCSANTVAYNALINGLCKDENIERAYKLLE--EMASKGYEPDNIT 117
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR-NVISSLLKLDDLESAEKIFEEW- 180
YN IL+ + GK + + ++ + + GY +V++ LD L K+ E W
Sbjct: 118 YNTILSGLCRMGKVSEAKQFFD------SMPSRGYSPDVVAYNGLLDALYKEGKVAEAWG 171
Query: 181 -------ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ + D N LID +CR ++A L KG ++ + G
Sbjct: 172 LFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLG 231
Query: 234 YRQNSQIHKAVEAMKKVL--------AAYQTLVKWKPSVESLAACLDYFKD 276
+ S + +A E KK++ A Y ++ V ++A CL+ +++
Sbjct: 232 LARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEE 282
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 121/305 (39%), Gaps = 20/305 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ Y ++ + G ++ D L H+M E G + + Y ++
Sbjct: 33 VEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCK 92
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E K+L M A D + Y T+ +G ++G + +A + V
Sbjct: 93 DENIERAYKLLEEM-ASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDV- 150
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK------KAVKVLNNGYRNVISSLLKLDDLESAE 174
AYN +L K GK V W L+K + V Y +I +++ + A
Sbjct: 151 VAYNGLLDALYKEGK---VAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAM 207
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+F++ ++ DT N ++ R +++AE + G + ++ + +G
Sbjct: 208 KLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSG- 266
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLV--KWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
H V M + L Y+ + ++ P V A +D + A +E ++
Sbjct: 267 ------HCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSK 320
Query: 293 KGFIP 297
G +P
Sbjct: 321 IGAVP 325
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 46/249 (18%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL Y+ ++ Y KTGN EK D L+ +M +G+ + TY L Y ++D+E +
Sbjct: 553 GLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKV 612
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
IL M + D IY V + L +SE + A+ ++L
Sbjct: 613 SSILQSMLGSGDKP-DNHIYGIV-------------IRNLSRSE------NMEVAF-MVL 651
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL-- 185
T K G D+ + Y ++IS L K+ D+E A + +E + L
Sbjct: 652 TEVEKNGLVPDL---------------HIYSSLISGLCKIADMEKAVGLLDEMAKEGLEP 696
Query: 186 ---CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
CY N LID +CR+G + +A N+ + KG + ++ L G +N I
Sbjct: 697 GIVCY-----NALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITD 751
Query: 243 AVEAMKKVL 251
A + K++L
Sbjct: 752 AFDLYKEML 760
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 146/351 (41%), Gaps = 40/351 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR A V YN M+ ++G E+ EM + G++ D +TY ++
Sbjct: 266 FEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCK 325
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
S + +L M PN+ V+Y T+ +G+ K G +A +LK E G
Sbjct: 326 GSRLKEAKALLDEMSCSGLKPNI----VVYGTLVDGFMKEGKTAEAFDILK--EMISAGV 379
Query: 118 KVNSAY--NVI--LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ N N+I L G+ G+ +L+ E+ K ++ Y ++ + D + A
Sbjct: 380 QPNKIMYDNLIRGLCKIGQLGRASKLLK--EMIKVGLRPDTFTYNPLMQGHFQQHDKDGA 437
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++ E + + + +I+ C+NG ++A NL+ +G + + + L G
Sbjct: 438 FELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIG 497
Query: 234 YRQNSQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN 285
+ + I A EA++K+ L Y +L+K +V G + AE
Sbjct: 498 HSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTV-------------GRMEEAEE 544
Query: 286 FIELLNDKGFIPTDLQDKLLDNVQNGKSNLET----LRELYGNSLAGNEET 332
+ + +G +P + L + NLE LR++ + L N +T
Sbjct: 545 YYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADT 595
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 116/259 (44%), Gaps = 13/259 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G+ ++Y+++++ K G + L+ EM + G+ D +TY + +
Sbjct: 371 LKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQ 430
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KG 116
D +G ++L M PNV Y + NG + G +A +L EE I +G
Sbjct: 431 QHDKDGAFELLNEMRNSGILPNV----YSYGIMINGLCQNGESKEAGNLL---EEMISEG 483
Query: 117 AKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAE 174
K N+ Y ++ + K G E KA V Y ++I L + +E AE
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ + + + + L D + LI YC+ G LEKA+ L+ G + + ++ L GY
Sbjct: 544 EYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGY 603
Query: 235 RQNSQIHKAVEAMKKVLAA 253
+++ K ++ +L +
Sbjct: 604 FKSNDYEKVSSILQSMLGS 622
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 107/246 (43%), Gaps = 40/246 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + GL Y +L+ Y+K+ ++EK+ S++ M +G D + Y + +
Sbjct: 581 LRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 640
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + E +LT +E + + D IY+++ +G K+ ++KA+ +L
Sbjct: 641 SENMEVAFMVLTEVEKN-GLVPDLHIYSSLISGLCKIADMEKAVGLLD------------ 687
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
E+ K+ ++ Y +I + D+ A +F+
Sbjct: 688 -----------------------EMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSI 724
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNS 238
++ L + LID C+NG + A +L ++++ R I ++ Y LATG +
Sbjct: 725 LAKGLVPNCVTYTALIDGNCKNGDITDAFDL--YKEMLDRGIAPDAFVYNVLATGCSDAA 782
Query: 239 QIHKAV 244
+ +A+
Sbjct: 783 DLEQAL 788
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 126/302 (41%), Gaps = 23/302 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V Y+S++ K G + + M + G+ D TY T L YA
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYAT 353
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + D ++ + Y K +D+A+ + K + V
Sbjct: 354 KGALVEMHALLDLMVRN-GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNV- 411
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
Y ++ + K G DD + +E ++++ G Y ++I L D + A
Sbjct: 412 VCYGTVIDVLCKSGSVDDAMLYFE------QMIDEGLTPNIIVYTSLIHGLCTCDKWDKA 465
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E++ E + +C +T N +ID +C+ G + ++E L + G + + ++ L G
Sbjct: 466 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 525
Query: 234 YRQNSQIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN 285
++ +A + +K + Y TL+ V + L FK+ G + N
Sbjct: 526 CCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPN 585
Query: 286 FI 287
I
Sbjct: 586 II 587
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 98/246 (39%), Gaps = 40/246 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G+ T+ +NS++ + K G + + L M G+ D TY T + A
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
+ K+L M V D V Y T+ NGY +V +D ALA+ K E G N
Sbjct: 531 KMDEATKLLASM-VSVGVKPDIVTYGTLINGYCRVSRMDDALALFK--EMVSSGVSPNII 587
Query: 121 ----------------------------------SAYNVILTLYGKYGKKDDVLRIWE-L 145
S YN+IL K D+ LR+++ L
Sbjct: 588 TYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 647
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+++ + +I +LLK ++ A+ +F + L D R + + + G L
Sbjct: 648 CLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSL 707
Query: 206 EKAENL 211
E+ ++L
Sbjct: 708 EELDDL 713
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 5/206 (2%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G V YN++L ++K G+ +K S HEM + GI D TY + ++A A
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM 252
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-Y 123
+ ++L M + V D + Y ++ +GY G +A+ LKK G + N Y
Sbjct: 253 DKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD--GVEPNVVTY 309
Query: 124 NVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ ++ K G+ + +I++ + K+ ++ YR ++ L + +
Sbjct: 310 SSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 369
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKA 208
+ D + N LI Y + +++A
Sbjct: 370 NGIQPDHHVFNILICAYAKQEKVDQA 395
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 120/311 (38%), Gaps = 31/311 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN---GITYDRYTYCTRLSA 57
+++M +LG YN++LK ++ L+H M ++ G D +Y T L+
Sbjct: 151 LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210
Query: 58 YADASD--------HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
+ D HE +D+ + D V Y+++ K +DKA+ +L
Sbjct: 211 FFKEGDSDKAYSTYHEMLDR---------GILPDVVTYSSIIAALCKAQAMDKAMEVLNT 261
Query: 110 SEEQIKGAKVNSA--YNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLK 166
+K + YN IL Y G+ K+ + + ++ V+ Y ++++ L K
Sbjct: 262 ---MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318
Query: 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
A KIF+ + L D L+ Y G L + L++ G +
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 378
Query: 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
+ L Y + ++ +A+ K+ P+V +D G + A +
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQH-----GLNPNVVCYGTVIDVLCKSGSVDDAMLY 433
Query: 287 IELLNDKGFIP 297
E + D+G P
Sbjct: 434 FEQMIDEGLTP 444
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 144/342 (42%), Gaps = 44/342 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN------------------ 42
+++MR GL V YN+++ + K G ++K SL+HE+ E+
Sbjct: 170 VERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKD 229
Query: 43 ---GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL 99
+ D TY T +S Y E + M + + D V Y+++ NG K G
Sbjct: 230 DNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLP-DVVTYSSIVNGLCKDGR 288
Query: 100 LDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY- 157
L +A +L++ ++ G N AY ++ K G WE + +++ G
Sbjct: 289 LSEAQELLREMKKM--GVDPNHVAYTTLIDSLFKAGSA------WEAFACQSQLVVRGMT 340
Query: 158 ------RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
++ L K + AE +F L ++ LID YC+ G +E+ E+L
Sbjct: 341 LDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESL 400
Query: 212 VNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACL 271
+ + K +V ++ + GY + + +A+ MKK+L Q ++ P+ A +
Sbjct: 401 LQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLD--QNII---PNAYVYAILI 455
Query: 272 DYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLLDNVQNGK 312
D + G A + + G + L D L++N++ GK
Sbjct: 456 DGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGK 497
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 160/344 (46%), Gaps = 29/344 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ + L L ++ Y +++ Y K G+ E+++SL+ EMEE I + TY + ++ Y
Sbjct: 366 FRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYT- 424
Query: 61 ASDHEGI-DKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+GI D+ + +M+ D N+ + +YA + +GY K G + +A +E ++ G
Sbjct: 425 ---KKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAG--KQEIATDLYNEMKLSGL 479
Query: 118 KVNSAYNVILTLYGKYGKKDDVLR--IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
KVN+ +L K GK+ D + ++ + + + + Y +++ K +A
Sbjct: 480 KVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALN 539
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLE----KAENLVNHEKLKGREIHVKSWYYLA 231
+ EE +++ +D N LI NGLLE +A+++ + G + ++ +
Sbjct: 540 MVEEMTEKSIPFDVVTYNVLI-----NGLLEHGKYEAKSVYSGMIEMGLAPNQATYNIMI 594
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
Y + ++ A+E ++ + K PS + + + G+I A N + ++
Sbjct: 595 KAYCKQGELDNALELWNEMKSH-----KIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMS 649
Query: 292 DKGFIPTDLQDKLLDNV--QNGKSN--LETLRELYGNSLAGNEE 331
G P + ++L N ++GK+N L+ +L L N+E
Sbjct: 650 VMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQE 693
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 131/304 (43%), Gaps = 50/304 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLS---- 56
+++M+ +G+ V Y +++ +K G+ + + ++ G+T D CT L
Sbjct: 296 LREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLD-LVMCTTLVDGLF 354
Query: 57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ + E + + L+ + PN + Y + +GY KVG +++ ++L++ EE+
Sbjct: 355 KSSKPKEAEDMFRALSKLNLIPN----SITYTALIDGYCKVGDMERVESLLQEMEEKHIN 410
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V + Y+ I+ Y K G D+ + NV+ +L
Sbjct: 411 PNVIT-YSSIINGYTKKGILDEAI------------------NVMKKML----------- 440
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
Q + + + LID YC+ G E A +L N KL G +++ + L ++
Sbjct: 441 -----DQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKR 495
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ +A E +K V + + L+ + SL +D F G A N +E + +K I
Sbjct: 496 GKRMDEAEELLKDVTS--RGLLLDHVNYTSL---MDGFFKAGKESAALNMVEEMTEKS-I 549
Query: 297 PTDL 300
P D+
Sbjct: 550 PFDV 553
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M ++GLA YN M+K Y K G + L +EM+ + I T T + ++A +
Sbjct: 578 MIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGE 637
Query: 64 HEGIDKIL---TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKV 119
E +L ++M PN+ VI+ + N K G KA A+L+ E+ + G K+
Sbjct: 638 IEKAMNVLNEMSVMGIHPNL----VIHRVLLNASSKSG---KANAVLQMHEQLVDMGLKI 690
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL 153
N AYN ++ ++ + + KKA VL
Sbjct: 691 NQEAYNNLIVVFCR----------LRMTKKATSVL 715
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 17/196 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G++ V YN +L G + D L +M+ENG+ D TY T +S Y
Sbjct: 752 QMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIG 811
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ + ++ M A V Y + + + KVG +D+A +L +E Q++G +S+
Sbjct: 812 NKKESIRLYCEMVAQGFVP-KTSTYNVLISDFAKVGKMDQARELL--NEMQVRGVPPSSS 868
Query: 123 -YNVILTLYGKYGKKDDVLR-------------IWELYKKAVKVLNNGYRNVISSLLKLD 168
Y++++ + K D+ R I E+ K + + S+ +
Sbjct: 869 TYDILICGWCNLSKHPDLDRTLKKIYRTDAKNLITEMNDKGFVPCKSTIACISSTFARPG 928
Query: 169 DLESAEKIFEEWESQA 184
+ AEK+ +E S A
Sbjct: 929 KMLDAEKLLKEIFSHA 944
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 91/200 (45%), Gaps = 3/200 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+++ D+GL YN+++ ++ + +K S++ M +G D TY + Y ++
Sbjct: 681 EQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCES 740
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
S + T M + V+ + V Y + G GL+ + + K +E S
Sbjct: 741 SHVKKALATYTQM-LNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDA-S 798
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y+ +++ YGK G K + +R++ E+ + + Y +IS K+ ++ A ++ E
Sbjct: 799 TYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEM 858
Query: 181 ESQALCYDTRIPNFLIDVYC 200
+ + + + + LI +C
Sbjct: 859 QVRGVPPSSSTYDILICGWC 878
>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 146/338 (43%), Gaps = 26/338 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K++D G T YNS++ L+ G K + ME G D TY + + A
Sbjct: 272 FKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAK 331
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + K+ M+ + N+ ++++A++ + GK G LD ++ K +++G +
Sbjct: 332 SGRLDAAFKLFQEMK-EKNLRPSFLVFASLVDSMGKAGRLDTSM----KVYMEMQGFGLR 386
Query: 121 SAYNVILTL---YGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKI 176
+ + ++L + K GK + LRIW+ KKA N G Y V+ S K LE+A +
Sbjct: 387 PSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSV 446
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F + E + L++++ +G ++ A L N G + ++ L T
Sbjct: 447 FSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLAN 506
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG-- 294
K V+ KVL + + + V + + Y KD G + A ++ + G
Sbjct: 507 K----KLVDVAAKVLLEMKAM-GFSVDVSASDVLMVYIKD-GSVDLALRWLRFMGSSGIR 560
Query: 295 ---FIPTDLQDKLLDN--VQNGKSNLETLRELYGNSLA 327
FI L + + N ++ K LET Y NS A
Sbjct: 561 TNNFIIRQLFESCMKNGLYESAKPLLET----YVNSAA 594
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 15/243 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ML Y G + L M +GI D YT+ + AYA+ + I M
Sbjct: 366 YKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMR 425
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
D V D V Y TV ++G +D A+ + +Q A AY+ ++ + +G
Sbjct: 426 -DHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYAYHCLIQGFCTHGS 483
Query: 136 KDDVLRIWELYKKAVKVLNNGYR-------NVISSLLKLDDLESAEKIFEEWESQALCYD 188
+L+ EL ++++NNG R ++I++L KL + A+ IF+ + D
Sbjct: 484 ---LLKAKELI---LEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPD 537
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ + L+D YC G +EKA + + G E +V + L GY + +I + + +
Sbjct: 538 AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFR 597
Query: 249 KVL 251
++L
Sbjct: 598 EML 600
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 6/231 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNF-EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
GL ++ N +LK + + E LD L+H E G D ++Y L + D
Sbjct: 145 GLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 204
Query: 67 IDKILTMM-EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
D +L MM E + D V Y TV + + K G ++KA + K+ ++ + + +V
Sbjct: 205 ADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSV 264
Query: 126 ILTLYGK--YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+ L GK + LR ++ K V N Y N+I + A ++F+E
Sbjct: 265 VHALCKARAMGKAEAFLR--QMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 322
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ D N L+ C+ G +++A ++ + +KG+ V S+ + GY
Sbjct: 323 SILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGY 373
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 103/254 (40%), Gaps = 5/254 (1%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++MR + V N ++ K G ++ + M G D ++Y L+ YA
Sbjct: 317 KEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATK 376
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + +M D +A D ++ + Y G+LDKA+ + + + G K +
Sbjct: 377 GCLVDMTDLFDLMLGD-GIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDH--GVKPDV 433
Query: 122 A-YNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++ + GK DD + + ++ + V Y +I L A+++ E
Sbjct: 434 VTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILE 493
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + D + +I+ C+ G + A+N+ + G+ + L GY +
Sbjct: 494 IMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGK 553
Query: 240 IHKAVEAMKKVLAA 253
+ KA+ +++A
Sbjct: 554 MEKALRVFDAMVSA 567
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 110/277 (39%), Gaps = 38/277 (13%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY-------CT-- 53
+MRD G+ V Y +++ + G + ++M + G+ D+Y Y CT
Sbjct: 423 EMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 482
Query: 54 -----------------RLSAYADASDHEGIDKILTMMEA----DPNVAL----DWVIYA 88
RL +S + K+ +M+A D V + D V+Y+
Sbjct: 483 SLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYS 542
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIW-ELY 146
+ +GY VG ++KAL + G + N Y ++ Y K G+ D+ L ++ E+
Sbjct: 543 MLMDGYCLVGKMEKALRVFDAMVSA--GIEPNVVVYGTLVNGYCKIGRIDEGLSLFREML 600
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
+K +K Y +I L A+ F E + + N ++ + +N +
Sbjct: 601 QKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFD 660
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+A L + +I + + + G Q ++ +A
Sbjct: 661 EAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 697
>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 562
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T YN +L + +G E+ ++ M + D +Y T LSAY +
Sbjct: 334 FEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYIN 393
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A D EG +K + D PNV V Y T+ GY K+ D + M K E ++G
Sbjct: 394 ADDMEGAEKFFKRLIQDGFEPNV----VTYGTLIKGYAKIN--DLEMVMKKYEEMLMRGI 447
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD 169
K N + I+ YGK G D + ++ + + +NV+ SL K D+
Sbjct: 448 KANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSLAKTDE 500
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
++N M+ ++ K G++EK +M E GI TY + +S + + I +
Sbjct: 246 MFNMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSFETNYKEVSNIYDQMQRA 305
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA--KVNSAYNVILTLYGK 132
+ P+V V YA + + YGK ++ALA+ EE + AYN++L +
Sbjct: 306 DLRPDV----VSYALLVSAYGKARREEEALAVF---EEMLDAGIRPTRKAYNILLDAFSI 358
Query: 133 YGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE-----WESQALC 186
G + +++ ++ + Y ++S+ + DD+E AEK F+ +E +
Sbjct: 359 SGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVT 418
Query: 187 YDTRIPNF 194
Y T I +
Sbjct: 419 YGTLIKGY 426
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M +LG+ +TTV YNS++ N++++ ++ +M+ + D +Y +SAY A
Sbjct: 269 QMAELGIQQTTVTYNSLMSF---ETNYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKAR 325
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E + M D + Y + + + G++++A + K + S
Sbjct: 326 REEEALAVFEEM-LDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCS- 383
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVK------VLNNGYRNVISSLLKLDDLESAEKI 176
T+ Y DD+ + +K+ ++ V+ Y +I K++DLE K
Sbjct: 384 ---YTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVT--YGTLIKGYAKINDLEMVMKK 438
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+EE + + + I ++D Y ++G + A
Sbjct: 439 YEEMLMRGIKANQTILTTIMDAYGKSGDFDSA 470
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 160/391 (40%), Gaps = 56/391 (14%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M LG V YN+++ Y GN E ++ M GI D YTY + +S
Sbjct: 253 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 312
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E + M + + + V Y T+ +GY G L++A + + E KG + S
Sbjct: 313 LEEASGLFDKM-VEIGLVPNAVTYNTLIDGYCNKGDLERAFSY--RDEMVKKGIMPSVST 369
Query: 123 YNVI---LTLYGKYGKKDDVLRIWELYKKAV-------KVLNNGYR-------------- 158
YN++ L + G+ G+ DD+++ E+ KK + +L NGY
Sbjct: 370 YNLLVHALFMEGRMGEADDMIK--EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNE 427
Query: 159 --------------NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
++I L + + ++ A+ +FE+ Q + D + N ++D +C NG
Sbjct: 428 MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGN 487
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
+E+A L+ K ++ L G + ++ +A ++L KP
Sbjct: 488 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEA-----RMLLDEMKRRGIKPDH 542
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ----DKLLDNVQNGKSNLETLRE 320
S + + GDI A + + GF PT L K L Q G E L+E
Sbjct: 543 ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKE 602
Query: 321 LYGNSLAGNEET-LSGPE--GDTSDLIEEKA 348
+ ++ ++ T LS E G+ L+E+ A
Sbjct: 603 MVNKGISPDDSTYLSLIEGMGNVDTLVEDNA 633
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 111/288 (38%), Gaps = 46/288 (15%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKT-----------------------------------GN 28
M++ G+ N ML L+ K G
Sbjct: 183 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGK 242
Query: 29 FEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA 88
+K + ME G + +Y T + Y+ + EG +IL M + D Y
Sbjct: 243 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYG 301
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIW---- 143
++ +G K G L++A + K E G N+ YN TL Y K D+ R +
Sbjct: 302 SLISGMCKEGRLEEASGLFDKMVEI--GLVPNAVTYN---TLIDGYCNKGDLERAFSYRD 356
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
E+ KK + + Y ++ +L + A+ + +E + + D N LI+ Y R G
Sbjct: 357 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 416
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
+KA +L N KG E ++ L + +++ +A + +K+L
Sbjct: 417 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 464
>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 484
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQASKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 MKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 38/248 (15%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+RD G+ Y+ ++ Y K N K L E+ + G+ D TY T L +
Sbjct: 334 LRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGR 393
Query: 64 HEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
KI M+ P D +++T+ GY K GL+++A+ + K E + + S
Sbjct: 394 IGDAKKIFDEMLRVGP--TPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNI-SF 450
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
Y V VI+ L K D + A IFE+ S
Sbjct: 451 YTV----------------------------------VINGLCKNDRVREAHAIFEKLPS 476
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
L D R N +I +CR GL ++ + ++ + G + ++ + G+ ++++I +
Sbjct: 477 IGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISE 536
Query: 243 AVEAMKKV 250
V MK++
Sbjct: 537 IVSFMKEM 544
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 132/296 (44%), Gaps = 10/296 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ + YNS++ K G +EK+ +L+ EM I + +T+ +
Sbjct: 226 LNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCK 285
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E D+++ M + V D + Y+ + +GY G +D+A + + KG K N
Sbjct: 286 EGKVEDADEVMRHM-IEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRD--KGIKPN 342
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y++++ Y K ++++ E+ +K +K Y ++ L+++ + A+KIF+
Sbjct: 343 IFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFD 402
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E D + + L+ Y + GL+E+A L + + + ++ + + G +N
Sbjct: 403 EMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKND 462
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
++ +A +K+ + + P V + + F EG + + + D G
Sbjct: 463 RVREAHAIFEKLPS-----IGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNG 513
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 133/302 (44%), Gaps = 15/302 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA-YA 59
++MR LG+ + + N + Y + S++ + GI ++ T+ T L +A
Sbjct: 85 FREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFA 144
Query: 60 DASDHEGI---DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ + + K++ +PN V+Y TV NG K G +K L++L+ E+
Sbjct: 145 ENKVTDAVVLFKKLVREKICEPN----EVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTK 200
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
V + Y++++ K D + + E+ +K + Y ++I L KL E +
Sbjct: 201 PDVRT-YSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKT 259
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E + + + + LID C+ G +E A+ ++ H KG E + ++ + GY
Sbjct: 260 LLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYC 319
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
Q+ +A ++V + KP++ S + ++ + + ++ A ++ KG
Sbjct: 320 LRGQVDRA----RRVFNVLRD-KGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGL 374
Query: 296 IP 297
P
Sbjct: 375 KP 376
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 160/391 (40%), Gaps = 56/391 (14%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M LG V YN+++ Y GN E ++ M GI D YTY + +S
Sbjct: 275 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 334
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E + M + + + V Y T+ +GY G L++A + + E KG + S
Sbjct: 335 LEEASGLFDKM-VEIGLVPNAVTYNTLIDGYCNKGDLERAFSY--RDEMVKKGIMPSVST 391
Query: 123 YNVI---LTLYGKYGKKDDVLRIWELYKKAV-------KVLNNGYR-------------- 158
YN++ L + G+ G+ DD+++ E+ KK + +L NGY
Sbjct: 392 YNLLVHALFMEGRMGEADDMIK--EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNE 449
Query: 159 --------------NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
++I L + + ++ A+ +FE+ Q + D + N ++D +C NG
Sbjct: 450 MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGN 509
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
+E+A L+ K ++ L G + ++ +A ++L KP
Sbjct: 510 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEA-----RMLLDEMKRRGIKPDH 564
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ----DKLLDNVQNGKSNLETLRE 320
S + + GDI A + + GF PT L K L Q G E L+E
Sbjct: 565 ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKE 624
Query: 321 LYGNSLAGNEET-LSGPE--GDTSDLIEEKA 348
+ ++ ++ T LS E G+ L+E+ A
Sbjct: 625 MVNKGISPDDSTYLSLIEGMGNVDTLVEDNA 655
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 111/288 (38%), Gaps = 46/288 (15%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKT-----------------------------------GN 28
M++ G+ N ML L+ K G
Sbjct: 205 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGK 264
Query: 29 FEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA 88
+K + ME G + +Y T + Y+ + EG +IL M + D Y
Sbjct: 265 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYG 323
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIW---- 143
++ +G K G L++A + K E G N+ YN TL Y K D+ R +
Sbjct: 324 SLISGMCKEGRLEEASGLFDKMVEI--GLVPNAVTYN---TLIDGYCNKGDLERAFSYRD 378
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
E+ KK + + Y ++ +L + A+ + +E + + D N LI+ Y R G
Sbjct: 379 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 438
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
+KA +L N KG E ++ L + +++ +A + +K+L
Sbjct: 439 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 486
>gi|413951889|gb|AFW84538.1| hypothetical protein ZEAMMB73_463361, partial [Zea mays]
Length = 423
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 24/207 (11%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
LA YN +L+ G+ ++ SL + G+ DR TY T +S H+ +D
Sbjct: 195 LAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLV---KHDQLD 251
Query: 69 KILTMMEADPN--VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI---KGAKVNSA- 122
L +++ P+ V D V Y + +G K G+ +KA+ K EQ+ GA N A
Sbjct: 252 NALDLLDEMPDYGVQADAVCYNALLSGCFKTGMFEKAI----KVWEQLVRDPGASPNLAT 307
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN------GYRNVISSLLKLDDLESAEKI 176
Y V+L K G+ + +W V NN Y +I L + D++SA ++
Sbjct: 308 YKVMLDGLCKLGRFKEAGEVWSRM-----VANNHQPDTVTYGILIHGLCRSGDVDSAARV 362
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNG 203
+ + L D + N LI +C+ G
Sbjct: 363 YSDMVKAGLVLDVAVYNSLIKGFCKVG 389
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEM-EENGITYDRYTYCTRLSAYA 59
+ +M D G+ V YN++L +KTG FEK + ++ + G + + TY L
Sbjct: 257 LDEMPDYGVQADAVCYNALLSGCFKTGMFEKAIKVWEQLVRDPGASPNLATYKVMLDGLC 316
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ ++ + M A+ N D V Y + +G + G +D A + + +K V
Sbjct: 317 KLGRFKEAGEVWSRMVAN-NHQPDTVTYGILIHGLCRSGDVDSA---ARVYSDMVKAGLV 372
Query: 120 --NSAYNVILTLYGKYGKKDDVLRIWE 144
+ YN ++ + K G+ + + W+
Sbjct: 373 LDVAVYNSLIKGFCKVGRTGEAWKFWD 399
>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
Length = 859
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 12/201 (5%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
++V N+ + + G + ++ +M + G+ + TY ++ Y D EG++++L
Sbjct: 229 CSIVVNA----HCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVL 284
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
+M ++ V+ + V + GY K G +D+A +L++ EE Y V++ Y
Sbjct: 285 RLM-SERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYC 343
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF---EEWESQALCY 187
+ G+ +D +RI E+ + +KV +I KL + AE++F +W + CY
Sbjct: 344 QMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCY 403
Query: 188 DTRIPNFLIDVYCRNGLLEKA 208
N L+D YCR G + KA
Sbjct: 404 SY---NTLLDGYCREGKVSKA 421
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 129/314 (41%), Gaps = 40/314 (12%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKL-DSLMHEMEENGIT------YDRYTYCTRLSAYADAS- 62
R V N + +Y + G + D LM E G+T +D + R+ S
Sbjct: 137 RAYAVCNHVFSVYKEFGFCSGVFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSF 196
Query: 63 -----DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
+G ++ M+ + D + + V N + +VG +D A+ +L+K ++
Sbjct: 197 LLGKLVQKGEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKE- 255
Query: 115 KGAKVNSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL------KL 167
G + N YN ++ Y G + V R+ L + RNV++ + K
Sbjct: 256 -GLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSE-----RGVSRNVVTCTMLMRGYCKK 309
Query: 168 DDLESAEKIFEEWES-QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
++ AEK+ E E + L D R+ L+D YC+ G +E A + + G ++++
Sbjct: 310 GKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVI 369
Query: 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW--KPSVESLAACLDYFKDEGDIGGAE 284
L GY + Q+ +A ++V +V W KP S LD + EG + A
Sbjct: 370 CNTLIKGYCKLGQVCEA----ERVFVG---MVDWNLKPDCYSYNTLLDGYCREGKVSKAF 422
Query: 285 NFIELLNDKGFIPT 298
E + G PT
Sbjct: 423 MLCEEMLGDGITPT 436
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 11/249 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ T V YN+++K G+++ L H M E G+T + + CT L + D +
Sbjct: 432 GITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRA 491
Query: 68 ----DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+IL VA + +I +G K+G L +A A+ + +E + + Y
Sbjct: 492 MMLWKEILGRGFTKSTVAFNTMI-----SGLCKMGKLMEAGAVFDRMKE-LGLSPDEITY 545
Query: 124 NVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ Y K G + +I + ++A+ Y ++I L K+ L + E ++
Sbjct: 546 RTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQT 605
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ L + LI +C L+KA +L +G +V + + ++ +I +
Sbjct: 606 RGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISE 665
Query: 243 AVEAMKKVL 251
A + K+L
Sbjct: 666 ATVILDKML 674
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL-T 72
+VYN + K+G ++ S++ + G D +TYCT + A + + + + K+
Sbjct: 718 IVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDE 777
Query: 73 MMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTL 129
M+E PN+ IY + NG K+G +D+A + K + KG N+ YN+++
Sbjct: 778 MLEKGLIPNIT----IYNALINGLCKLGNIDRAQRLFYKLYQ--KGLVPNAVTYNILIGC 831
Query: 130 YGKYGKKDDVLRIWE 144
Y + G D R+ E
Sbjct: 832 YCRIGDLDKASRLRE 846
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 109/296 (36%), Gaps = 45/296 (15%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M D L YN++L Y + G K L EM +GIT
Sbjct: 393 MVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGIT------------------ 434
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
P V V Y TV G VG D AL + E +G N +
Sbjct: 435 --------------PTV----VTYNTVIKGLVDVGSYDDALHLWHLMVE--RGVTPNEIS 474
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+L + K G D + +W E+ + + +IS L K+ L A +F+ +
Sbjct: 475 CCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMK 534
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
L D L D YC+NG +++A + + + ++ + L G + +++
Sbjct: 535 ELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLN 594
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +L QT P+V + + + DE + A + + ++GF P
Sbjct: 595 DVTD----LLVEMQTR-GLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTP 645
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKVNSAYNVILTLYGKYGKKDDVLRIW 143
++Y +G K G LD+A ++L S +G N Y ++ G D+ ++
Sbjct: 718 IVYNIAIDGLCKSGKLDEARSVL--SVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLR 775
Query: 144 -ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
E+ +K + Y +I+ L KL +++ A+++F + + L + N LI YCR
Sbjct: 776 DEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRI 835
Query: 203 GLLEKAENL 211
G L+KA L
Sbjct: 836 GDLDKASRL 844
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 123/296 (41%), Gaps = 44/296 (14%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM+ G+ + N ++ K G+ E+ ++ M+ G D TY + + A A
Sbjct: 193 EKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVA 252
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+IL M P D V + T+ +G+ K G+L +AL +L++ +
Sbjct: 253 GKVVEAAEILKTMSCSP----DLVTFNTLLDGFCKAGMLPRALEVLEEMCRE-------- 300
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
N++ DV+ Y +++ L ++ ++ A + EE
Sbjct: 301 --NIL----------PDVIT---------------YTILVNGLCRVGQVQVAFYLLEEIV 333
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
Q D L+D C++G +E+A LV ++G V + L +GY + +H
Sbjct: 334 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVH 393
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KA E + ++++ + P + + L +G I A + I L +G++P
Sbjct: 394 KAREILAEMVS-----INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVP 444
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 130/299 (43%), Gaps = 17/299 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ + + +A ++N ++ +K GN ++ L ME + + + TY T +S
Sbjct: 85 LRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCK 144
Query: 61 ASDHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + E ++L M+ A D V Y T+ N + + + +A A E++K A +
Sbjct: 145 SGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAF----REKMKAAGI 200
Query: 120 NS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEK 175
N N++++ K G ++ L I + K A V + Y ++I +L + A +
Sbjct: 201 NPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAE 260
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
I + D N L+D +C+ G+L +A ++ + V ++ L G
Sbjct: 261 ILKTMSCSP---DLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLC 317
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ Q+ A +++++ + P V + + +D G+I A ++ ++ +G
Sbjct: 318 RVGQVQVAFYLLEEIVRQ-----GYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRG 371
>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 484
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAXKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 XKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 5/249 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++ G+ + V Y+ ++ + K GN E D E + T + Y + A+
Sbjct: 368 VRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQ 427
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + ++ ME + + IY T+ +GY V K L + K+ +E V
Sbjct: 428 TCNMERAEALVREMEEE-GIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVV 486
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y ++ LY K GK L + + K + VK Y +I+ +KL D +A +FE+
Sbjct: 487 T-YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFED 545
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLATGYRQNS 238
+ + D + N +I +C G +++A V +KL+ R +++ + G+ ++
Sbjct: 546 MVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPT-TRTFMPIINGFAKSG 604
Query: 239 QIHKAVEAM 247
+ +++E
Sbjct: 605 DMRRSLEVF 613
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/338 (18%), Positives = 137/338 (40%), Gaps = 53/338 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ G T V Y ++ LY K G K + M+E G+ ++ TY ++ +
Sbjct: 473 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 532
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + M + + D ++Y + + +G +D+A+ +K+ ++++
Sbjct: 533 LKDWANAFAVFEDMVKE-GMKPDVILYNNIIAAFCGMGNMDRAIQTVKEM-QKLRHRPTT 590
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
+ I+ + K G L ++++ ++ V + + +I+ L++ +E A +I +E
Sbjct: 591 RTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDE 650
Query: 180 W------------------------ESQALCYDTRIPN--FLIDVY---------CRNGL 204
+A Y TR+ N +D++ C++G
Sbjct: 651 MTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGR 710
Query: 205 LEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKA---VEAMKKVLAAYQTLVK 259
++ A L +++ R I S+ Y L G+ + + +A ++ MKK
Sbjct: 711 MQSA--LAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV------- 761
Query: 260 WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KP + + + + GD+ A IE + G P
Sbjct: 762 -KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKP 798
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R + VYN ++ + + G+ + L+ +M++ G+ D +TY + +SA + A
Sbjct: 719 KEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKA 778
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + + MEA PN+ Y T+ G+ + L +KAL+ + E + G K
Sbjct: 779 GDMNRATQTIEEMEALGVKPNIK----TYTTLIKGWARASLPEKALSCYE--EMKAVGLK 832
Query: 119 VNSA-YNVILT 128
+ A Y+ +LT
Sbjct: 833 PDKAVYHCLLT 843
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/262 (18%), Positives = 114/262 (43%), Gaps = 13/262 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ ++YN+++ + GN ++ + EM++ T+ ++ +A + D
Sbjct: 550 GMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRS 609
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
++ MM V A + NG + ++KA+ +L E + G N Y I
Sbjct: 610 LEVFDMMRRCGCVPTVHTFNALI-NGLVEKRQMEKAVEIL--DEMTLAGVSANEHTYTKI 666
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ Y G + L + ++V Y ++ + K ++SA + +E ++ +
Sbjct: 667 MQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNI 726
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
++ + N LID + R G + +A +L+ K +G + + ++ + + +++A +
Sbjct: 727 PRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQ 786
Query: 246 AMKKVLA--------AYQTLVK 259
++++ A Y TL+K
Sbjct: 787 TIEEMEALGVKPNIKTYTTLIK 808
>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
Length = 551
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 134/315 (42%), Gaps = 51/315 (16%)
Query: 23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME---ADPN 79
Y K+G L+ EM +G+ + Y + L AY D + + ++L +ME +P
Sbjct: 153 YCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPT 212
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139
V Y + +G + K A+ E++K ++ ++ Y + +V
Sbjct: 213 VG----TYTILVDGLSAARDITKVEAVF----EEMKSKNLSGDVYFYSSVINAYCRAGNV 264
Query: 140 LRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
R E++ + V NG Y +I+ K+ +E+AE + + + + + + +
Sbjct: 265 RRASEVFDECV---GNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVF 321
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL- 251
N +ID YCR +++KA + + G E+ V ++ LA G R+ +++ +A ++ ++
Sbjct: 322 NTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIE 381
Query: 252 -------AAYQTLVKW----------------------KPSVESLAACLDYFKDEGDIGG 282
+Y TL+ +PS+ + +D + +G I
Sbjct: 382 KGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIRE 441
Query: 283 AENFIELLNDKGFIP 297
AE F + + KG +P
Sbjct: 442 AERFKKEMEKKGLVP 456
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 122/270 (45%), Gaps = 17/270 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ L+ Y+S++ Y + GN + + E NGI + +TY ++ +
Sbjct: 236 FEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCK 295
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + ++T M+ V ++ +++ T+ +GY + ++DKAL + E+ G +++
Sbjct: 296 IGQMEAAEMLVTDMQVR-GVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKM--GIELD 352
Query: 121 S-AYNVILTLYGKYGKKDD---VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN + + + D+ +LRI + +K V+ + Y +IS D+ A ++
Sbjct: 353 VYTYNTLACGLRRANRMDEAKNLLRI--MIEKGVRPNHVSYTTLISIHCNEGDMVEARRL 410
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E N ++D Y + G + +AE + KG + S+ L G+
Sbjct: 411 FREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCV 470
Query: 237 NSQIHKAV---EAMKKV-----LAAYQTLV 258
N ++ A+ E MK+ L AY L+
Sbjct: 471 NGKVDVALRLFEEMKQRGSKPNLVAYTALI 500
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 108/240 (45%), Gaps = 15/240 (6%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V + +M+ Y K G EK ME G+ D T + LSA A +DK + +
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGL---LDKGIML 419
Query: 74 ME-ADPNVALDWVIYA-TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
E AD +VI A ++ + Y K +DKAL + + I V S ++IL L
Sbjct: 420 HEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHR----IPNKNVISWTSIILGLRL 475
Query: 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
Y + + L ++ ++K + +V+S+ ++ L ++I L +D +
Sbjct: 476 NY-RSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFL 534
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
PN L+D+Y R G +E A N N E V SW L TGY Q + AVE K++
Sbjct: 535 PNALLDMYVRCGRMEPAWNQFN-----SCEKDVASWNILLTGYAQQGKGGLAVELFHKMI 589
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 15/270 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M D GL V +N ++ K G + L+ M E+GI D TY + + +
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D ++ M + D + Y + NGY K +++A+ + +E + G + N
Sbjct: 333 VGDLNSARELFVSMPSK-GCEPDVISYNVLINGYSKTLKVEEAMKLY--NEMLLVGKRPN 389
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN--VISSLLKLDDLESAEKIF 177
Y+ +L GK DD +++ + K A + N Y + L K D L A K+F
Sbjct: 390 VITYDSLLKGIFLAGKVDDAKKLFSVMK-AHGIAENSYTYGIFLDGLCKNDCLFEAMKLF 448
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E +S + N LID C+ G LE A L +G E +V ++ + G+ +
Sbjct: 449 TELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCRE 508
Query: 238 SQIHKAVEAMKKV--------LAAYQTLVK 259
Q+ KA ++K+ + Y TL++
Sbjct: 509 GQVDKANVLIQKMEANGCTPDIITYNTLMR 538
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 124/298 (41%), Gaps = 20/298 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD---- 63
G + V YN+++K + L M++ G T D TY T + +
Sbjct: 134 GYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIA 193
Query: 64 ---HEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
H+ + ++ E + PNV + Y + +G KVG D+A + ++ + Q
Sbjct: 194 LKLHQEMLNDISRYEINCKPNV----ITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPS 249
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ S YN ++ + GK ++ R+ E+ + ++ + +I +L K + A+K+
Sbjct: 250 IIS-YNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLL 308
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ D N LI+ +C G L A L KG E V S+ L GY +
Sbjct: 309 GVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKT 368
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ +A++ ++L LV +P+V + + L G + A+ ++ G
Sbjct: 369 LKVEEAMKLYNEML-----LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI 421
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K+ + G V Y M+ + + G +K + L+ +ME NG T D TY T + + +
Sbjct: 483 FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYE 542
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATV 90
++ E + ++L M A +V+ D + + V
Sbjct: 543 SNKLEEVVQLLHRM-AQKDVSPDAITCSIV 571
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 130/305 (42%), Gaps = 18/305 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM+++GL T V YN+++ Y GN E +M G+ TY + A
Sbjct: 284 LEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFL 343
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA----MLKKSEEQIKG 116
+ D I+ M ++ + D V Y + NGY + G + KA M+ K + +
Sbjct: 344 DCKMDEADGIIKEM-SEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRV 402
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ Y +L+ G+ + DD+ ++ +K + + +I +++ A +
Sbjct: 403 TYTSLIY--VLSKRGRMKQADDLFE--KIVRKGIFPDLIMFNALIDGHCANGNMDRAFAM 458
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+E + + D N L+ CR G +E A L+ K +G + S+ L +GY +
Sbjct: 459 LKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSK 518
Query: 237 NSQIHKAVEAMKKVLAA--YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ A ++L+ TL+ + ++ L +EGD AE ++ + KG
Sbjct: 519 RGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCK-----NEEGD--HAEQLLKEMISKG 571
Query: 295 FIPTD 299
P D
Sbjct: 572 ITPND 576
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 44/284 (15%)
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAML-------KKSEEQIKGAKV 119
I LT + P++A +V + G+G + + K LAM K Q+ +
Sbjct: 40 ISTALTSLHKTPDLAFQFVTHI----GFGDLDIKSKCLAMAVISHAPNSKPSLQLLKETI 95
Query: 120 NSAYNVILTLYGKYGKKDDVLRI-----WELYKKAVKVLNNG-----------YRNVISS 163
NS I ++ + G VL I ++L +A L G + VI
Sbjct: 96 NSGVYSIREVFNELGVARGVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPH 155
Query: 164 LLKLDDLES----AEKIFEEWESQALCYDTRIP------NFLIDVYCRNGLLEKAENLVN 213
+ +D+ S + + + W A + RI N +I+V C+ G L+KA+ +
Sbjct: 156 VHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIG 215
Query: 214 HEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273
+ G + +V ++ + GY ++ A +++ KP + + +
Sbjct: 216 LMEALGIKPNVVTYNTIIHGYCSRGRVEGA-----RMIFDLMKCRGVKPDSYTYGSFISG 270
Query: 274 FKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLDNVQNGKSNLE 316
EG + A +E + + G PT + + L+D N K NLE
Sbjct: 271 MCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCN-KGNLE 313
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/357 (19%), Positives = 143/357 (40%), Gaps = 41/357 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR G V YN ++ + G + L++ + G D +Y T L
Sbjct: 201 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCA 260
Query: 61 ASDHEGIDKILT-MMEAD--PN-VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ + ++++ MME + PN V D +I + + G++++A+ +L++ E G
Sbjct: 261 SKRWDDVEELFAEMMEKNCMPNEVTFDMLI-----RFFCRGGMVERAIQVLEQMTEH--G 313
Query: 117 AKVNSAY-NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
N+ N+++ K G+ DD ++ ++ Y V+ L + + + A+
Sbjct: 314 CATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAK 373
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ E + N I + C+ GL+E+A L+ G + V ++ L G+
Sbjct: 374 ELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGF 433
Query: 235 RQNSQIHKAVEAMKKVLA-----AYQTLVK----------------------WKPSVESL 267
I A+E + + Y TL+ P+V +
Sbjct: 434 CVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTF 493
Query: 268 AACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLDNVQNGKSNLETLRELYG 323
+ +F +G + A +E + + G P + + LLD + S+ + L L+G
Sbjct: 494 NVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHG 550
>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 484
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMVRLSVPTEAGHYGVLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAAKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 LKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 19/245 (7%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ML Y G + L M +GI D YT+ + AYA+ + I M
Sbjct: 364 YTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMR 423
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--AYNVILTLYGKY 133
D V V Y TV ++G +D A+ +K + I V AY+ ++ + +
Sbjct: 424 -DHGVKPHVVTYMTVIAALCRIGKMDDAM---EKFNQMIDQGVVPDKYAYHCLIQGFCTH 479
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYR-------NVISSLLKLDDLESAEKIFEEWESQALC 186
G +L+ EL + ++NNG R ++I++L KL + A+ IF+ + L
Sbjct: 480 GS---LLKAKELISE---IMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLH 533
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D + N L+D YC G +EKA + + G E +V + L GY + +I + +
Sbjct: 534 PDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSL 593
Query: 247 MKKVL 251
+++L
Sbjct: 594 FREML 598
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 2/229 (0%)
Query: 8 GLARTTVVYNSMLKLYYKTGNF-EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
GL ++ + +LK + + E LD L+H E G D ++Y L + +
Sbjct: 143 GLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQ 202
Query: 67 IDKILTMM-EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
D +L MM E + D V Y TV +G+ K G ++KA + K+ ++ + + +V
Sbjct: 203 ADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSV 262
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ L + ++ K V N Y N+I + A ++F+E Q++
Sbjct: 263 VHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSI 322
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
D N L+ C+ G +++A ++ + +KG+ V S+ + GY
Sbjct: 323 LPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGY 371
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 134/346 (38%), Gaps = 54/346 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY-------CT-- 53
+MRD G+ V Y +++ + G + ++M + G+ D+Y Y CT
Sbjct: 421 EMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHG 480
Query: 54 -----------------RLSAYADASDHEGIDKILTMMEAD------PNVAL--DWVIYA 88
RL S + K+ +M+A NV L D V+Y
Sbjct: 481 SLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYN 540
Query: 89 TVGNGYGKVGLLDKAL----AMLKKS-EEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW 143
+ +GY VG ++KAL AM+ E + G Y ++ Y K G+ D+ L ++
Sbjct: 541 MLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG------YGTLVNGYCKIGRIDEGLSLF 594
Query: 144 -ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
E+ +K +K Y +I L + A+ F E + + + ++ +N
Sbjct: 595 REMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKN 654
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
++A L + +I + + + G Q ++ +A K L A + P
Sbjct: 655 RCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA-----KDLFASISRSGLVP 709
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV 308
+ + + EG + AE+ + + G P +LL++V
Sbjct: 710 CAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEP---DSRLLNHV 752
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 36/247 (14%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ V Y+S++ K +K ++ + +M G+ D +TY + Y+
Sbjct: 245 KEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 304
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA------LAMLKKSEE--- 112
+ ++ M ++ D V T+ K G + +A +AM ++ +
Sbjct: 305 GQWKEAVRVFKEMRRQ-SILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 363
Query: 113 --------QIKGAKVNS-----------------AYNVILTLYGKYGKKDDVLRIW-ELY 146
KG V+ +NV++ Y G D + I+ E+
Sbjct: 364 YTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMR 423
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
VK Y VI++L ++ ++ A + F + Q + D + LI +C +G L
Sbjct: 424 DHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLL 483
Query: 207 KAENLVN 213
KA+ L++
Sbjct: 484 KAKELIS 490
>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 823
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 6/209 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K+ D G++ +YN ++ KTG F L EM + I D Y Y T + + +
Sbjct: 440 KLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSG 499
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNS 121
D + K+ T + + V +D V + + G+ + G+LD+ALA + + +EE + K
Sbjct: 500 DFDEARKVFT-LSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFT- 557
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y+ I+ Y K ++I+ ++ K K Y ++I+ D AE+ F+E
Sbjct: 558 -YSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEM 616
Query: 181 ESQALCYDTRIPNFLIDVYCR-NGLLEKA 208
+S+ L + LI + + + LEKA
Sbjct: 617 QSRDLVPNVVTYTTLIRSFAKESSTLEKA 645
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 127/287 (44%), Gaps = 16/287 (5%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ++ K G E L+ E + G+ +Y + AY + +++ K+L +
Sbjct: 348 YNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSKEYDIASKLLLQL- 406
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYG 134
A+ D V Y + +G G +D A+ M K + +G ++A YN++++ K G
Sbjct: 407 AERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLID--RGVSPDAAIYNMLMSGLCKTG 464
Query: 135 KKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ L E+ +++ Y +I ++ D + A K+F + + D N
Sbjct: 465 RFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGVKVDVVHHN 524
Query: 194 FLIDVYCRNGLLEKA---ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+I +CR+G+L++A N +N E L + ++ + GY + + A++ + +
Sbjct: 525 AMIKGFCRSGMLDEALACMNRMNEEHLVPDKF---TYSTIIDGYVKQQDMATAIKIFRDM 581
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K KP+V + + ++ F +GD AE + + + +P
Sbjct: 582 EKN-----KCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVP 623
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 77/180 (42%), Gaps = 11/180 (6%)
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW----ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ A + +L Y + G + I+ ELY V+ ++S ++K LE A K
Sbjct: 134 HEALSHVLHAYAESGFLSKAVEIYDYVVELYDSVPDVI--ACNALLSLVVKSRRLEDARK 191
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+++E + C D ++ C G +E+ L+ KG ++ + + GY
Sbjct: 192 VYDEMCERGGCVDNYSTCIMVKGMCSEGKVEEGRKLIEDRWGKGCVPNIVFYNTIIGGYC 251
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ I A K++ L + P++E+ ++ F +GD ++ +E + ++G
Sbjct: 252 KLGDIENAKLVFKEL-----KLKGFMPTLETFGTMINGFCKKGDFVASDRLLEEVKERGL 306
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +I KL D+E+A+ +F+E + + +I+ +C+ G ++ L+ E+
Sbjct: 243 YNTIIGGYCKLGDIENAKLVFKELKLKGFMPTLETFGTMINGFCKKGDFVASDRLL--EE 300
Query: 217 LKGREIHVKSWY---YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273
+K R + V W+ + YR ++ A E+++ ++A KP + + ++
Sbjct: 301 VKERGLRVCVWFLNNIIDAKYRHGFKVDPA-ESIRWIVAN-----DCKPDIATYNILINR 354
Query: 274 FKDEGDIGGAENFIELLNDKGFIPTDLQ 301
EG A ++ + KG I T+L
Sbjct: 355 LCKEGKKEVAAGLLDEASKKGLILTNLS 382
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 5/214 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++MR+ G+ TVV+ +++ + K GN L EM GI D Y +
Sbjct: 338 EEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRV 397
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D + + I+ M + + D V Y T+ +G+ K G LD A+ M K E +G ++
Sbjct: 398 RDLKAANDIVEEMRNN-GLKPDKVTYTTLIDGFCKEGELDMAMEM--KQEMSDEGVALDE 454
Query: 122 -AYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ K G+ D RI E+ + ++ N Y VI + K D+++ K+ +E
Sbjct: 455 VTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKE 514
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+++ N +++ +C G ++ A+ L+N
Sbjct: 515 MQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLN 548
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 124/299 (41%), Gaps = 14/299 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++ D G+ +N +++ ++G ++ EM G+ T+ T +S AS
Sbjct: 234 QLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKAS 293
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D + + +M A VA D Y G K G + A+ M E+++ VN
Sbjct: 294 DLNSANALRGLM-AKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMF----EEMRERGVNPN 348
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
V TL + K+ +V EL++ + +K Y + + L ++ DL++A I E
Sbjct: 349 TVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVE 408
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + L D LID +C+ G L+ A + +G + ++ L +G ++
Sbjct: 409 EMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSG 468
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + + +++ A +P + +D F D+ ++ + +KG P
Sbjct: 469 RSVDSERILCEMMEA-----GLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKP 522
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 9/214 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ V YN++ + + + + ++ EM NG+ D+ TY T + +
Sbjct: 373 REMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKE 432
Query: 62 SDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGL-LDKALAMLKKSEEQIKGAK 118
+ +D + M + +D VALD V Y T+ +G K G +D + + E ++
Sbjct: 433 GE---LDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLE--P 487
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N+ Y +++ + K ++ E+ K K Y V++ L +++A+ +
Sbjct: 488 DNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLL 547
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ +C D N L+D +C++G + AE L
Sbjct: 548 NAMLNIGVCPDDITYNILLDGHCKHGKVRDAEEL 581
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 127/286 (44%), Gaps = 14/286 (4%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
++Y +M+ Y +T N ++ ++L+ EME GI Y T + Y + E K LT+
Sbjct: 412 IIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEE---KCLTV 468
Query: 74 ME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLY 130
E + A V Y + N Y KVG + KAL + K E G K N Y++++ +
Sbjct: 469 FERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESA--GIKHNMKTYSMLINGF 526
Query: 131 GKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K + I+E + K +K Y N+I + + ++ A + +E + + +
Sbjct: 527 LKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTS 586
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
R +I + R G +++A ++ + + G V ++ L G + Q+ KA+E + +
Sbjct: 587 RTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 646
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ L P+ + + + GD G A + L D+G
Sbjct: 647 M-----ALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGL 687
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 123/282 (43%), Gaps = 40/282 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY-- 58
+ MR G+ T+ VY S++ Y + E+ S +M+E G+ TY + +
Sbjct: 329 FESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAK 388
Query: 59 ---ADASD---------HEGIDKIL------------TMMEADP----------NVALDW 84
ADA+D H ++ I+ M +A+ + +D
Sbjct: 389 IGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPID- 447
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144
IY T+ +GY VG +K L + ++ +E V S Y ++ LY K GK L + +
Sbjct: 448 -IYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVS-YGCLINLYAKVGKISKALEVSK 505
Query: 145 LYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
+ + A +K Y +I+ LKL D +A IFE+ L D + N +I +C G
Sbjct: 506 MMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMG 565
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+++A +V + + +++ + G+ + ++ +A++
Sbjct: 566 TMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALD 607
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/335 (17%), Positives = 135/335 (40%), Gaps = 47/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ G A + V Y ++ LY K G K + ME GI ++ TY ++ +
Sbjct: 469 FERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLK 528
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D I + D + D V+Y + + +G +D+A+ M+K+ +++ + +
Sbjct: 529 LKDWANAFAIFEDVVKD-GLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKE-RHRPTS 586
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-------------------------KAVKVLN- 154
+ I+ + + G+ L ++++ + KA+++L+
Sbjct: 587 RTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDE 646
Query: 155 ----------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ Y ++ L D A + F + + L D L+ C++G
Sbjct: 647 MALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGR 706
Query: 205 LEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
++ A L +++ + I ++ Y L G+ + + +A + M+++ KP
Sbjct: 707 MQSA--LAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQG-----GVKP 759
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + + ++ GD+ A +E + G P
Sbjct: 760 DIHTYTSFINACCKAGDMLRASKMMEEMETSGVKP 794
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R T VYN ++ + + G+ + LM +M++ G+ D +TY + ++A A
Sbjct: 715 KEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKA 774
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D K++ ME PNV Y T+ +G+ + L +KAL + E ++ G K
Sbjct: 775 GDMLRASKMMEEMETSGVKPNVK----TYTTLIHGWARASLPEKALRCFQ--EMKLAGLK 828
Query: 119 VNSA-YNVILT 128
+ A Y+ ++T
Sbjct: 829 PDKAVYHCLMT 839
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 21/291 (7%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGIT-YDRYTYCTRLSAYADASDHEGIDKILTMM 74
YN ++ K+GN + L +M ++G D + T +S + A ++L M
Sbjct: 332 YNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEM 391
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKY 133
+A D V Y T+ +G K G L +A +L+ E Q G K N Y ++ Y K+
Sbjct: 392 KAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQ--EMQAVGCKPNVVTYAALINGYAKH 449
Query: 134 GKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ-ALCYDTRI 191
G ++ ++ E+ K Y V+S+ K + AE ++++ +++ + C I
Sbjct: 450 GMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAI 509
Query: 192 P-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE---AM 247
LID YCR E+ L+ +E+ + W Y N I K E
Sbjct: 510 TYRILIDGYCRAEDTEQGLTLL-------QEMTARGWS--CDSYTYNVLIAKLAETEEVP 560
Query: 248 KKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
K LA YQ ++ PS + + F GD+ A + ++ +N+KG +
Sbjct: 561 SKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHL 611
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 14/301 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G V YN+ + K G +K ++ EM+ GI D T+C+ +S A+
Sbjct: 177 EMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKAN 236
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV--- 119
+ ++ M + D + Y+ + + + LD +L+ + G +
Sbjct: 237 RIDDAFQVFKGM-LERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVY 295
Query: 120 -NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
++A+ L GK+ ++L +L+ Y VI L K +++ A K+
Sbjct: 296 THNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLS--YNFVIDGLCKSGNVDDAWKLSR 353
Query: 179 EWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSWYYLATGYRQ 236
+ C D N LI +C+ G L +A L+ K K + V ++ L G +
Sbjct: 354 KMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSK 413
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ +A K+L V KP+V + AA ++ + G AE+ + ++ KG
Sbjct: 414 FGSLKQA-----KLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCF 468
Query: 297 P 297
P
Sbjct: 469 P 469
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M+ +G V Y +++ Y K G +E+ +SL EM G D TY T LSA++
Sbjct: 424 LQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSK 483
Query: 61 A---SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A S EG+ + L + D + Y + +GY + ++ L +L+ E +G
Sbjct: 484 AGMMSKAEGVYQQLK--NKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQ--EMTARGW 539
Query: 118 KVNS-AYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKL----DDLE 171
+S YNV++ K + ++V + +Y++ + ++ +SL++L D+
Sbjct: 540 SCDSYTYNVLI---AKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVN 596
Query: 172 SAEKIFEE 179
SA + +E
Sbjct: 597 SARSMVQE 604
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 129/310 (41%), Gaps = 36/310 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G+ V + S++ K + + M E G D TY L +
Sbjct: 210 LEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSR 269
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGY-------GKVGLLDKALAMLKKSEEQ 113
A+ + +D++L M+A + V+ N + GK L L + +S
Sbjct: 270 ANRLDTVDEVLEHMQA---MKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIES--- 323
Query: 114 IKGAKVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG--------YRNVISSL 164
G+ N +YN ++ K G DD W+L + K+L++G + +IS
Sbjct: 324 --GSLPNLLSYNFVIDGLCKSGNVDDA---WKLSR---KMLDSGCCKPDVIFFNTLISGF 375
Query: 165 LKLDDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
K L A ++ E +++ +C D N LID + G L++A+ L+ + G + +
Sbjct: 376 CKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPN 435
Query: 224 VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283
V ++ L GY ++ +A E++ ++A P + + L F G + A
Sbjct: 436 VVTYAALINGYAKHGMYEEA-ESLFDEMSAKGCF----PDIITYNTVLSAFSKAGMMSKA 490
Query: 284 ENFIELLNDK 293
E + L +K
Sbjct: 491 EGVYQQLKNK 500
>gi|168060335|ref|XP_001782152.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666390|gb|EDQ53046.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 3/198 (1%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ++ Y + GN + + + MEE GI D + ++AY A E + ++L +
Sbjct: 48 YTKLIDKYGREGNVVEAEQMFRIMEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQDVS 107
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
+ LD V Y TV YG VG+ +A +L S E AY +L YG+ G
Sbjct: 108 L-AGLELDAVFYKTVIVAYGSVGMPKEAEDVL-SSMESAGVPDGKDAYLALLNAYGRLGH 165
Query: 136 KDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
D R+++ ++ K + + ++ + D +AE +F+ + L D R
Sbjct: 166 ASDAQRVFDRMHLKGFRGDLKAFTALLEAYSNAQDYANAELVFQSLRAAGLKPDDRALAS 225
Query: 195 LIDVYCRNGLLEKAENLV 212
++ VY + +L +A ++
Sbjct: 226 MVSVYAKANMLNRAAEVI 243
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 15/258 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR Y +++ + + G EK + + +++E+G D Y Y + AY+ A
Sbjct: 278 EMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAG 337
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
G +I ++M+ +P D Y + + YG+ GL + A A+ E++K +
Sbjct: 338 FPYGAAEIFSLMQHMGCEP----DRASYNIMVDAYGRGGLHEDAQAVF----EEMKRLGI 389
Query: 120 NSAYNVILTLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ L Y K DV + + EL++ ++ ++++ +L E+
Sbjct: 390 TPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEE 449
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ ES D N LI++Y R G EK E L K + V +W Y
Sbjct: 450 VLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYS 509
Query: 236 QNSQIHKAVEAMKKVLAA 253
+ K +E ++++ A
Sbjct: 510 RKKLYTKCLEIFEEMIDA 527
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 11/219 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR GL + +VYN+ + K GN ++ + M+ + TY ++ + AS
Sbjct: 208 EMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKAS 267
Query: 63 DHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
K+ M + PN+ Y + N + + GL +KA + ++ +E V
Sbjct: 268 QSYMALKLFNEMRSQKCKPNIC----TYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDV 323
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL-ESAEKIFE 178
AYN ++ Y + G I+ L + + N++ L E A+ +FE
Sbjct: 324 Y-AYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFE 382
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN--HE 215
E + + + L+ Y + G + K E++VN HE
Sbjct: 383 EMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHE 421
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ LG+ T + +L Y K G+ K + +++E+ E+G+ D + + L+ Y
Sbjct: 381 FEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGR 440
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDK 102
++++LT ME+ P A D Y + N YG+ G +K
Sbjct: 441 LGQFGKMEEVLTAMESGP-YATDISTYNILINIYGRAGFFEK 481
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 5/215 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M+ +T Y ++ L+ K L +EM + TY ++A+A
Sbjct: 241 FQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAR 300
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++I ++ D + D Y + Y + G A + S Q G + +
Sbjct: 301 EGLCEKAEEIFEQLQEDGHEP-DVYAYNALMEAYSRAGFPYGAAEIF--SLMQHMGCEPD 357
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
A YN+++ YG+ G +D ++E K+ + + ++S+ K D+ E I
Sbjct: 358 RASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVN 417
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
E L DT + N ++++Y R G K E ++
Sbjct: 418 ELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLT 452
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ ++ + GL T V NSML LY + G F K++ ++ ME D TY ++ Y
Sbjct: 416 VNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGR 475
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
A E ++ + + A N+ D V + + Y + L K L + ++
Sbjct: 476 AGFFEKMEGLFQSLAAK-NLKPDVVTWTSRLGAYSRKKLYTKCLEIFEE 523
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/343 (20%), Positives = 141/343 (41%), Gaps = 18/343 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M + G+A YN M+ + G + L+ +M E I D T+ +SA
Sbjct: 319 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVK 378
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+K+ M + D V Y ++ G+ K D A M + +
Sbjct: 379 EGKLFEAEKLCDEM-LHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-----DLMASPDV 432
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N I+ +Y + + D+ +++ E+ ++ + Y +I ++D+L +A+ +F+E
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 492
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S +C DT N L+ +C N LE+A L ++ ++ ++ + G + S+
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 552
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A + L + +P V++ + F + I A + D G P +
Sbjct: 553 VDEAWD-----LFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 607
Query: 300 -----LQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPE 337
L L + KS +E + E+ N +G+ T+ E
Sbjct: 608 STYNTLIRGCLKAGEIDKS-IELISEMRSNGFSGDAFTIKMAE 649
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 107/253 (42%), Gaps = 7/253 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM GL V Y +++ K G+ + +L+ +MEE I D Y +
Sbjct: 249 VNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCK 308
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
H + + M + +A + Y + +G+ G A +L+ E+ V
Sbjct: 309 DGHHSDAQYLFSEM-LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVL 367
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ +N +++ K GK + ++ E+ + + Y ++I K + + A+ +F+
Sbjct: 368 T-FNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDL 426
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S D N +IDVYCR +++ L+ +G + ++ L G+ +
Sbjct: 427 MASP----DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 482
Query: 240 IHKAVEAMKKVLA 252
++ A + +++++
Sbjct: 483 LNAAQDLFQEMIS 495
>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 484
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 137/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN + K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAXKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 XKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
Length = 795
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 4/233 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR L + M+ Y K G E+ + EME+ G + +Y + + Y
Sbjct: 56 QMRRLDIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLG 115
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D EG +L M ++ V + V + GY K +++A +L++ E++ G V+
Sbjct: 116 DIEGAKGVLKFM-SEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKE-DGVVVDEY 173
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY ++ Y K GK D +R+ E+ K +K+ ++I+ K + E++
Sbjct: 174 AYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCM 233
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
L D+ L+D YCR+GL KA N+ + KG E V ++ L G
Sbjct: 234 RKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKG 286
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 9/205 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ T V YN++LK + G+++ L H M + G+T + YCT L D
Sbjct: 272 GIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGD---F 328
Query: 68 DKILTMMEADPNVALDWVIYA--TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYN 124
+ LT+ + ++ IYA T+ NG K+G +D A K+ EE G K + Y
Sbjct: 329 SRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEEL--GCKPDGITYR 386
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+ Y K G ++ +I E +K + Y ++I L + + E +++
Sbjct: 387 TLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTR 446
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKA 208
L + LI +C G L+KA
Sbjct: 447 GLSPNVVTYGALIAGWCDQGRLDKA 471
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 130/315 (41%), Gaps = 48/315 (15%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT-- 72
+YNS++ + + KL L+ EM+ G++ + TY ++ + D +DK +
Sbjct: 419 MYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGR---LDKAFSAY 475
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-----------SEEQIKGAKV-- 119
A + +I + + + ++G +D+A +L+K E + A +
Sbjct: 476 FEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRK 535
Query: 120 ---------------------NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGY 157
N YN+ + K GK +D R + L + N Y
Sbjct: 536 LDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTY 595
Query: 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
+I + A + +E ++ L + N L++ C++G L++A L + L
Sbjct: 596 CTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHL 655
Query: 218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE 277
KG +V ++ L GY ++ +A++ K+L PS+ + ++ ++ F +
Sbjct: 656 KGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKE-----GISPSIITYSSLINGFCKQ 710
Query: 278 GDIGGAENFIELLND 292
D+ E ++LLN+
Sbjct: 711 SDV---EEAMKLLNE 722
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 12/224 (5%)
Query: 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKD 137
++ D A + N Y K G +++A+ +++ E+ G ++N+ +YN ++ Y G +
Sbjct: 61 DIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKL--GFELNAVSYNSLVDGYVSLGDIE 118
Query: 138 DVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ-ALCYDTRIPNFL 195
+ + + +K V +I K +E AEK+ E E + + D L
Sbjct: 119 GAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGAL 178
Query: 196 IDVYCRNGLLEKAENLVNHEKLK-GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
ID YC+ G + A V E LK G ++++ L GY +N Q+H+ +++L
Sbjct: 179 IDGYCKVGKMGDAIR-VRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEG----ERLLMCM 233
Query: 255 QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ L KP S +D + +G A N + + KG PT
Sbjct: 234 RKL-DLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPT 276
>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 484
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KVGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAXKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 XKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 126/302 (41%), Gaps = 23/302 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V Y+S++ K G + + M + G+ D TY T L YA
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYAT 353
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + D ++ + Y K +D+A+ + K + V
Sbjct: 354 KGALVEMHALLDLMVRN-GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNV- 411
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
Y ++ + K G DD + +E ++++ G Y ++I L D + A
Sbjct: 412 VCYGTVIDVLCKSGSVDDAMLYFE------QMIDEGLTPNIIVYTSLIHGLCTCDKWDKA 465
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E++ E + +C +T N +ID +C+ G + ++E L + G + + ++ L G
Sbjct: 466 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 525
Query: 234 YRQNSQIHKAVE--------AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN 285
++ +A + +K + Y TL+ V + L FK+ G + N
Sbjct: 526 CCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPN 585
Query: 286 FI 287
I
Sbjct: 586 II 587
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 98/246 (39%), Gaps = 40/246 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G+ T+ +NS++ + K G + + L M G+ D TY T + A
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
+ K+L M V D V Y T+ NGY +V +D ALA+ K E G N
Sbjct: 531 KMDEATKLLASM-VSVGVKPDIVTYGTLINGYCRVSRMDDALALFK--EMVSSGVSPNII 587
Query: 121 ----------------------------------SAYNVILTLYGKYGKKDDVLRIWE-L 145
S YN+IL K D+ LR+++ L
Sbjct: 588 TYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 647
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+++ + +I +LLK ++ A+ +F + L D R + + + G L
Sbjct: 648 CLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSL 707
Query: 206 EKAENL 211
E+ ++L
Sbjct: 708 EELDDL 713
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 5/206 (2%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G V YN++L ++K G+ +K S HEM + GI D TY + ++A A
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM 252
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-Y 123
+ ++L M + V D + Y ++ +GY G +A+ LKK G + N Y
Sbjct: 253 DKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD--GVEPNVVTY 309
Query: 124 NVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ ++ K G+ + +I++ + K+ ++ YR ++ L + +
Sbjct: 310 SSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 369
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKA 208
+ D + N LI Y + +++A
Sbjct: 370 NGIQPDHHVFNILICAYAKQEKVDQA 395
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 120/311 (38%), Gaps = 31/311 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN---GITYDRYTYCTRLSA 57
+++M +LG YN++LK ++ L+H M ++ G D +Y T L+
Sbjct: 151 LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210
Query: 58 YADASD--------HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
+ D HE +D+ + D V Y+++ K +DKA+ +L
Sbjct: 211 FFKEGDSDKAYSTYHEMLDR---------GILPDVVTYSSIIAALCKAQAMDKAMEVLNT 261
Query: 110 SEEQIKGAKVNSA--YNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLK 166
+K + YN IL Y G+ K+ + + ++ V+ Y ++++ L K
Sbjct: 262 ---MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318
Query: 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
A KIF+ + L D L+ Y G L + L++ G +
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 378
Query: 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
+ L Y + ++ +A+ K+ P+V +D G + A +
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQH-----GLNPNVVCYGTVIDVLCKSGSVDDAMLY 433
Query: 287 IELLNDKGFIP 297
E + D+G P
Sbjct: 434 FEQMIDEGLTP 444
>gi|357161570|ref|XP_003579133.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Brachypodium distachyon]
Length = 721
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 122/303 (40%), Gaps = 40/303 (13%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR +G+ V YN ++K + ++ M +NG D+ +Y T +S
Sbjct: 221 RMRRVGVEPDVVTYNCLIKGLCSVRRVVEALEMIGVMLKNGCPPDKISYYTVMSFLCKEK 280
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ +L M D + D V Y + + K G D+AL L++SE
Sbjct: 281 RVSEVRSLLATMRNDAGLLTDQVTYNMLIHVLAKHGHADEALEFLRESE----------- 329
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
GK + D+V GY V+ S + A++I E S
Sbjct: 330 --------GKRFRVDEV----------------GYSAVVHSFCLNGRMAEAKEIVGEMIS 365
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D + ++D +CR G +++A ++ H G + ++ + L G + + +
Sbjct: 366 KECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTALLNGLCKVGKSSE 425
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD 302
A E + K + W PS + + + F+ EG + + + + + KGF PT ++
Sbjct: 426 AWELLNKSGEDW-----WTPSDITYSVVMHGFRREGKLKESCDVVAQMLQKGFFPTTVEI 480
Query: 303 KLL 305
LL
Sbjct: 481 NLL 483
>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 484
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDXLRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAXKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 XKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 20/245 (8%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
R V +NSM+ Y K G F + +L +M+ G+T D YT+ + LSA ++ D E K
Sbjct: 222 RNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLE-FGKY 280
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
+ + D + + + ++ + Y + G +DKA A+ K G + +NVI+
Sbjct: 281 IHYLSGDLSQS-EVMVGTALTEMYAQCGDVDKAFAVFIKI-----GKRDVFCWNVIIKAL 334
Query: 131 GKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
+G+ ++ ++I+ L +K +K + + + + + +E IF E Y
Sbjct: 335 ALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKD---YKI 391
Query: 190 RIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
IP LID+ CRNG LE+A LV + V W L G R + A
Sbjct: 392 -IPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQP---DVAIWGALLGGCRVTGDLKLAE 447
Query: 245 EAMKK 249
+ ++K
Sbjct: 448 KVVEK 452
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 132/300 (44%), Gaps = 16/300 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G+A + YN+M+ + K G+ E L +M ++G + TY LS A
Sbjct: 220 EMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAG 279
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D+ +M+ + ++ D Y+ + +G + G + ML E +K +
Sbjct: 280 R---MDETRALMDEMTSYSMLPDGFTYSILFDGLTRTG---DSRTMLSLFGESLKKGVII 333
Query: 121 SAYNVILTLYG--KYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIF 177
AY + L G K GK ++ E+ V Y +I+ ++ DL+ A IF
Sbjct: 334 GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIF 393
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E+ +S+ + D N LI+ C+ ++ +AE+LV + G + V+++ L Y +
Sbjct: 394 EQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRA 453
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Q+ K VL+ Q K +V S + + F G I A ++ + K +P
Sbjct: 454 GQLEKCF----TVLSDMQD-KGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVP 508
>gi|218189906|gb|EEC72333.1| hypothetical protein OsI_05540 [Oryza sativa Indica Group]
Length = 747
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 24/305 (7%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M DLG+ART + YN++LK G + + M + +T D TY T + +
Sbjct: 198 MPDLGIARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKK 257
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---N 120
E ++ M+ D V D Y T+ N + + G L+ A +K +++ GA +
Sbjct: 258 MEAALRVFGDMK-DHGVTPDVTTYNTLLNAWVRAGDLESA----RKVFDEMPGAGFAQNS 312
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDD----LESAEK 175
+YNV++ Y + GK ++ + ++ E+ +K +++ + ++ L DD +E+ +
Sbjct: 313 VSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGL--CDDEGRVVEARKA 370
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV----KSWYYLA 231
+ + E + D + L+ CR G L+ A ++ H+K G+ HV + + L
Sbjct: 371 MDDMAERRLTPKDKSVFLRLVTTLCRAGDLDGALDV--HQK-SGQFKHVLVDPRQYGVLM 427
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA--ACLDYFKDEGDIGGAENFIEL 289
+ AVE M ++L L P +E A ++Y G+ AE F
Sbjct: 428 ESLCAGGKCDGAVEVMDELLEKGTLLSPKSPVLEGPAYNPVIEYLCSNGNTSKAETFFRQ 487
Query: 290 LNDKG 294
L KG
Sbjct: 488 LMKKG 492
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 102/262 (38%), Gaps = 18/262 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G A+ +V YN M+K Y + G E+ L EM E G+ T+ +
Sbjct: 302 EMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLC--- 358
Query: 63 DHEG----IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D EG K + M D ++ + + G LD AL + +KS Q K
Sbjct: 359 DDEGRVVEARKAMDDMAERRLTPKDKSVFLRLVTTLCRAGDLDGALDVHQKS-GQFKHVL 417
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWE--------LYKKAVKVLNNGYRNVISSLLKLDD 169
V+ Y V++ GK D + + + L K+ + Y VI L +
Sbjct: 418 VDPRQYGVLMESLCAGGKCDGAVEVMDELLEKGTLLSPKSPVLEGPAYNPVIEYLCSNGN 477
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
AE F + + + D N LI + + G+ E A+ ++ +G +S
Sbjct: 478 TSKAETFFRQLMKKGV-DDKAAFNSLIRGHAKEGVPEAAQEILAIMTRRGVRTDPESHAL 536
Query: 230 LATGYRQNSQIHKAVEAMKKVL 251
L + + ++ A A+ ++
Sbjct: 537 LVDSFLKKNEPADAKTALDSMM 558
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 124/308 (40%), Gaps = 23/308 (7%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+D G+ YN++L + + G+ E + EM G + +Y + Y +A
Sbjct: 268 MKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGK 327
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGY----GKVGLLDKALAMLKKSEEQIKGAKV 119
E + + M + + L +A + G G+V ++ AM +E ++ K
Sbjct: 328 VEEAVGLFSEM-GEKGLRLSEKTFAALMPGLCDDEGRV--VEARKAMDDMAERRLT-PKD 383
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYK--KAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S + ++T + G D L + + K V V Y ++ SL + A ++
Sbjct: 384 KSVFLRLVTTLCRAGDLDGALDVHQKSGQFKHVLVDPRQYGVLMESLCAGGKCDGAVEVM 443
Query: 178 EEWESQALCYDTRIP-------NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
+E + + P N +I+ C NG KAE KG + ++ L
Sbjct: 444 DELLEKGTLLSPKSPVLEGPAYNPVIEYLCSNGNTSKAETFFRQLMKKGVDDKA-AFNSL 502
Query: 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
G+ + EA +++L A T + ES A +D F + + A+ ++ +
Sbjct: 503 IRGHAKEG----VPEAAQEIL-AIMTRRGVRTDPESHALLVDSFLKKNEPADAKTALDSM 557
Query: 291 NDKGFIPT 298
++G +P+
Sbjct: 558 MEQGHVPS 565
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 15/268 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D GL V +N ++ K G + L+ M E+GI D TY + + +
Sbjct: 250 EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVG 309
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D ++ M + D + Y + NGY K +++A+ + +E + G + N
Sbjct: 310 DLNSARELFVSMPSK-GCEPDVISYNVLINGYSKTLKVEEAMKLY--NEMLLVGKRPNVI 366
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN--VISSLLKLDDLESAEKIFEE 179
Y+ +L GK DD +++ + K A + N Y + L K D L A K+F E
Sbjct: 367 TYDSLLKGIFLAGKVDDAKKLFSVMK-AHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTE 425
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S + N LID C+ G LE A L +G E +V ++ + G+ + Q
Sbjct: 426 LKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQ 485
Query: 240 IHKAVEAMKKV--------LAAYQTLVK 259
+ KA ++K+ + Y TL++
Sbjct: 486 VDKANVLIQKMEANGCTPDIITYNTLMR 513
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+K+ + G V Y M+ + + G +K + L+ +ME NG T D TY T + + +
Sbjct: 458 FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYE 517
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATV 90
++ E + ++L M A +V+ D + + V
Sbjct: 518 SNKLEEVVQLLHRM-AQKDVSPDAITCSIV 546
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 23/245 (9%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD---- 63
G + V YN+++K + L M++ G T D TY T + +
Sbjct: 134 GYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIA 193
Query: 64 ---HEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLK--KSEEQIKG 116
H+ + ++ E + PNV + Y + +G KVG D+A + + K++ I
Sbjct: 194 LKLHQEMLNDISRYEINCKPNV----ITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPN 249
Query: 117 AKVNSA-------YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLD 168
++ +NV++ K GK + ++ + ++ V + Y ++I +
Sbjct: 250 EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVG 309
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
DL SA ++F S+ D N LI+ Y + +E+A L N L G+ +V ++
Sbjct: 310 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 369
Query: 229 YLATG 233
L G
Sbjct: 370 SLLKG 374
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 135/335 (40%), Gaps = 41/335 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR+ G TV YN ++ ++G E+ +ME+ G+ D +TY ++
Sbjct: 267 LVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCK 326
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +L M E PNV V+YA + +G+ + G D+A M+K E G
Sbjct: 327 SRRSNEAKALLDEMSCAELKPNV----VVYANLIDGFMREGNADEAFKMIK--EMVAAGV 380
Query: 118 KVNS-AYNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ N Y+ ++ K G+ D L + ++ + + + Y +I + + A +
Sbjct: 381 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 440
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E E+ + + + +I C++G EKA +L+ KG + + + L +GY
Sbjct: 441 LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 500
Query: 236 QNSQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKD----------- 276
+ + A E K+ L Y +L+ V + YF
Sbjct: 501 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 560
Query: 277 -----------EGDIGGAENFIELLNDKGFIPTDL 300
GD+ AE ++ + D G P D+
Sbjct: 561 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 595
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 126/322 (39%), Gaps = 45/322 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M D GL V+Y +L+ Y+K+ + EK+ S M + G+ D Y + +
Sbjct: 582 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 641
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + E ++L+ +E + +V D +Y+++ +G K +KA +L
Sbjct: 642 SGNMEAAFRVLSGIEKNGSVP-DVHVYSSLISGLCKTADREKAFGILD------------ 688
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
E+ KK V Y +I L K D+ A +F
Sbjct: 689 -----------------------EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 725
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ L + LID C+ G + A L N G + L TG +
Sbjct: 726 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 785
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+A+ ++ + ++ S+ S +D F G + + ++ +G +P L
Sbjct: 786 EQAMFLIE------EMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 839
Query: 301 QDKLLDNVQNGKSNLETLRELY 322
++N+ +G S L E++
Sbjct: 840 T---IENIISGLSEAGKLSEVH 858
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 136/336 (40%), Gaps = 13/336 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + + YNS++ K G E+ +M+E G+ + +TY + Y
Sbjct: 514 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNG 573
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NS 121
D E ++++ M D + + VIY + Y K ++K + K +Q G + N
Sbjct: 574 DLESAEQLVQRM-LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ--GVMLDNR 630
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEW 180
Y +++ G + R+ +K V + + Y ++IS L K D E A I +E
Sbjct: 631 IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 690
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + + N LID C++G + A N+ N KG + ++ L G + I
Sbjct: 691 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 750
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
A ++LA T + SV + GD+ A IE + +G
Sbjct: 751 SNAFYLYNEMLATGITPDAFVYSVLTTGC-----SSAGDLEQAMFLIEEMFLRGHASISS 805
Query: 301 QDKLLDNVQNGKSNLETLRELY---GNSLAGNEETL 333
+ L+D ETL+ L+ G L N T+
Sbjct: 806 FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 841
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 65/329 (19%), Positives = 129/329 (39%), Gaps = 41/329 (12%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MRD G+A + N++LK + L + M GI+ D YTY T + AY +
Sbjct: 200 MRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVRE 259
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-------IKG 116
+ K+L M + L+ V Y + G + G +++A K E+ G
Sbjct: 260 FDTAKKVLVEMR-ERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 318
Query: 117 AKVNS---------------------------AYNVILTLYGKYGKKDDVLR-IWELYKK 148
A +N Y ++ + + G D+ + I E+
Sbjct: 319 ALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 378
Query: 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
V+ Y N++ L K+ ++ A + ++ + DT N +I+ + R+ + A
Sbjct: 379 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDA 438
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268
L++ + G +V ++ + G Q+ + KA + ++++ T KP+ A
Sbjct: 439 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM-----TTKGLKPNAFVYA 493
Query: 269 ACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + EG++ A + + +P
Sbjct: 494 PLISGYCREGNVSLACEIFDKMTKVNVLP 522
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 10/294 (3%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D G +N ++ + K G + E+ + G+ ++ T +S A E
Sbjct: 135 DSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVE 194
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YN 124
++ +ME++ V D ++ + NG K G LD+ + E KG N +
Sbjct: 195 EGFRLKGVMESE-RVCPDVFTFSALINGLCKEGRLDEGSLLF--DEMCGKGLVPNGVTFT 251
Query: 125 VILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
V++ K GK D L+ +++ + V+ Y +I+ L K+ DL+ A ++ E +
Sbjct: 252 VLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSAS 311
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
L D LID C+ G +E A + +G E+ ++ L +G ++ ++H A
Sbjct: 312 GLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDA 371
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ +L+A +KP + +D F +G++ ++ + G +P
Sbjct: 372 ERMLRDMLSA-----GFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVP 420
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 5/230 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+++++ K G ++ L EM G+ + T+ + + K MM
Sbjct: 215 FSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMML 274
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYG 134
A V D V Y + NG KVG L +A ++ +E G + + + ++ KYG
Sbjct: 275 AQ-GVRPDLVTYNALINGLCKVGDLKEARRLV--NEMSASGLRPDRITFTTLIDGCCKYG 331
Query: 135 KKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ L I + ++ +++ + + +IS L + + AE++ + S D
Sbjct: 332 DMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYT 391
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
++D +C+ G + L+ + G V ++ L G + Q+ A
Sbjct: 392 MVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNA 441
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q M G+ V YN+++ K G+ ++ L++EM +G+ DR T+ T +
Sbjct: 270 FQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCK 329
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK 108
D E +I M + + LD V + + +G + G + A ML+
Sbjct: 330 YGDMESALEIKRRM-VEEGIELDDVAFTVLISGLCRDGRVHDAERMLR 376
>gi|4454476|gb|AAD20923.1| hypothetical protein [Arabidopsis thaliana]
Length = 424
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 120/271 (44%), Gaps = 30/271 (11%)
Query: 35 LMHEMEENGITYDRYTYCTRLSAYADAS--DHEGIDKILTMMEADPNVALDWVIYATVGN 92
L+ EM+E + + L++Y+ AS D +G++K L+ E + W + G
Sbjct: 142 LLGEMDEKKMQPQGLCFVKLLTSYSMASVVDVQGVEKFLSKWEV--MIQDKWTTFYFPGL 199
Query: 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK-AVK 151
Y + G ++K LA+L++SE + Y ++T+Y +DV R+W L K +
Sbjct: 200 VYIRAGFMEKGLALLRRSETFVDDGCREIIYGCLMTVYCNENLTEDVYRLWNLAKDYGIS 259
Query: 152 VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
++ +++ + K DL+ + EEW C + + +F + C EK ++
Sbjct: 260 FDSSRCSDIVKAFTKKGDLDG---VMEEWNE---CPNLDLMDFGLQHRCVKEEAEKVVDM 313
Query: 212 VNHEKLKGREIHVKSWYYLATGYRQNSQIH----KAVEAMKKVLAAYQTLV--KWKPS-- 263
+ ++ K W LA ++ N+ + K E K+V A + + +W P
Sbjct: 314 LGKKESK--------WESLA--HKVNTLVEDEDAKEEERRKRVAEAMEGRLHDRWNPKNS 363
Query: 264 -VESLAACLDYFKDEGDIGGAENFIELLNDK 293
S AC+ Y + D+ + + LLN +
Sbjct: 364 MALSAFACVQYVEGRRDMESTADILRLLNKR 394
>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
Length = 550
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 113/274 (41%), Gaps = 40/274 (14%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+N ++K + GNF+K L+ M E G + D T+ + A +L ++
Sbjct: 221 FNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQ 280
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGK-- 132
D + V Y +V +GY K G ++ AL++ E G + N+ YNV++ YGK
Sbjct: 281 RDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLE--SGTRPNTVTYNVLINGYGKAL 338
Query: 133 ---------------------------------YGKKDDVLRIW-ELYKKAVKVLNNGYR 158
G+ DD +RIW E+ + ++ +
Sbjct: 339 DMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFS 398
Query: 159 NVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
+I SL K + A E +A + T I N +ID+ C+ G +E+A +V +
Sbjct: 399 IIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEE 458
Query: 218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
KG ++ L G+ +I +A+ K++
Sbjct: 459 KGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMV 492
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 99/236 (41%), Gaps = 7/236 (2%)
Query: 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPN 79
++L G+ ++ S +H + +Y ++ + H K+ M
Sbjct: 84 VRLAPCAGSALRIFSALHS-PPLSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSG 142
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDD 138
D V ++ V GLLD A+ +L K+ + G ++ AYN +L L G+ D
Sbjct: 143 YLPDAVFFSFVAGSCTNAGLLDAAVTLLTKASQ--FGRRIEPYAYNNLLNLLIARGRAQD 200
Query: 139 VLRIWELYKKAVKVLNNG--YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLI 196
+ ++E + + +G + VI + ++ + + A ++ E DT N L+
Sbjct: 201 AVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILV 260
Query: 197 DVYCRNGLLEKAENLVNHEKLKGREI-HVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
D CR + + +L+ + G + +V ++ + +GY + ++ A+ +L
Sbjct: 261 DGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDML 316
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 135/333 (40%), Gaps = 41/333 (12%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR+ G TV YN ++ ++G E+ +ME+ G+ D +TY ++ +
Sbjct: 142 EMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 201
Query: 63 DHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+L M E PNV V+YA + +G+ + G D+A M+K E G +
Sbjct: 202 RSNEAKALLDEMSCAELKPNV----VVYANLIDGFMREGNADEAFKMIK--EMVAAGVQP 255
Query: 120 NS-AYNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N Y+ ++ K G+ D L + ++ + + + Y +I + + + A ++
Sbjct: 256 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLL 315
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E E+ + + + +I C++G EKA +L+ KG + + + L +GY +
Sbjct: 316 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCRE 375
Query: 238 SQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKD------------- 276
+ A E K+ L Y +L+ V + YF
Sbjct: 376 GNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTY 435
Query: 277 ---------EGDIGGAENFIELLNDKGFIPTDL 300
GD+ AE ++ + D G P D+
Sbjct: 436 SGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 468
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 126/322 (39%), Gaps = 45/322 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M D GL V+Y +L+ Y+K+ + EK+ S M + G+ D Y + +
Sbjct: 455 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 514
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + E ++L+ +E + +V D +Y+++ +G K +KA +L
Sbjct: 515 SGNMEAAFRVLSEIEKNGSVP-DVHVYSSLISGLCKTADREKAFGILD------------ 561
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
E+ KK V Y +I L K D+ A +F
Sbjct: 562 -----------------------EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 598
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ L + LID C+ G + A L N G + L TG +
Sbjct: 599 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 658
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+A+ ++ + ++ S+ S +D F G + + ++ +G +P L
Sbjct: 659 EQAMFLIE------EMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 712
Query: 301 QDKLLDNVQNGKSNLETLRELY 322
++N+ +G S L E++
Sbjct: 713 T---IENIISGLSEAGKLSEVH 731
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 136/336 (40%), Gaps = 13/336 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + + YNS++ K G E+ +M+E G+ + +TY + Y
Sbjct: 387 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNG 446
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NS 121
D E ++++ M D + + VIY + Y K ++K + K +Q G + N
Sbjct: 447 DLESAEQLVQRM-LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ--GVMLDNR 503
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEW 180
Y +++ G + R+ +K V + + Y ++IS L K D E A I +E
Sbjct: 504 IYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 563
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + + N LID C++G + A N+ N KG + ++ L G + I
Sbjct: 564 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 623
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
A ++LA T + SV + GD+ A IE + +G
Sbjct: 624 SNAFYLYNEMLATGITPDAFVYSVLTTGC-----SSAGDLEQAMFLIEEMFLRGHASISS 678
Query: 301 QDKLLDNVQNGKSNLETLRELY---GNSLAGNEETL 333
+ L+D ETL+ L+ G L N T+
Sbjct: 679 FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 714
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 129/329 (39%), Gaps = 41/329 (12%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MRD GLA + N++LK + L + M GI+ D YTY T + AY +
Sbjct: 73 MRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVRE 132
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-------IKG 116
+ K+L M + L+ V Y + G + G +++A K E+ G
Sbjct: 133 FDTAKKVLVEMR-ERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 191
Query: 117 AKVNS---------------------------AYNVILTLYGKYGKKDDVLR-IWELYKK 148
A +N Y ++ + + G D+ + I E+
Sbjct: 192 ALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 251
Query: 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
V+ Y N++ L K+ ++ A + ++ + DT N +I+ + R+ + A
Sbjct: 252 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDA 311
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268
L++ + G +V ++ + G Q+ + KA + ++++ T KP+ A
Sbjct: 312 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM-----TTKGLKPNAFVYA 366
Query: 269 ACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + EG++ A + + +P
Sbjct: 367 PLISGYCREGNVSLACEIFDKMTKVNVLP 395
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 116/282 (41%), Gaps = 44/282 (15%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEM-----EENGITYDR--------------- 48
L VVY +++ + + GN ++ ++ EM + N ITYD
Sbjct: 218 LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 277
Query: 49 ---------------YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG 93
TY + + + + ++L+ ME + ++ + Y+ + +G
Sbjct: 278 LLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEME-NAGISPNVYTYSIMIHG 336
Query: 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK-- 151
+ G +KA +L+ E KG K N+ V L Y ++ +V E++ K K
Sbjct: 337 LCQSGEPEKASDLLE--EMTTKGLKPNAF--VYAPLISGYCREGNVSLACEIFDKMTKVN 392
Query: 152 VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
VL + Y ++I L K+ +E + K F + + + L + + LI Y +NG LE AE
Sbjct: 393 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 452
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
LV G + + + L Y ++ I K K +L
Sbjct: 453 QLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 494
>gi|242055653|ref|XP_002456972.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
gi|241928947|gb|EES02092.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
Length = 821
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 12/290 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QK RDLGL V+YN + Y K GN + L++EM G+ D+ Y ++ Y
Sbjct: 392 FQKFRDLGLHLDGVLYNVAMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCL 451
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M N+ D V Y + +GY + GL+ K +L+ +Q G + N
Sbjct: 452 KGETENAWQVFEQM-LKANIKPDVVTYNILSSGYSRNGLVMKVFDLLEHMMDQ--GLEPN 508
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y + + + + G + ++ + +K + ++ Y +++ L + A +F
Sbjct: 509 SLTYGIAIAGFCRGGNLSEAEVLFNIVEEKGIDNIDVLYSSMVCGYLHSGWTDHAYMLFL 568
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
Q D + LI+ CR+ +++A + + K HV S+ L + Y Q+
Sbjct: 569 RVAKQGNMVDHLSCSKLINGLCRDEKVQEASTVCSMMLEKNVVPHVISYSKLISAYCQSR 628
Query: 239 QI-------HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIG 281
+ H VE + AY L+ V L + F ++G
Sbjct: 629 DMRNAHLWFHDMVERGLSDVTAYTILMNGYCKVGQLQEACELFVQMVNLG 678
>gi|115443739|ref|NP_001045649.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|41052925|dbj|BAD07836.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535180|dbj|BAF07563.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|215706484|dbj|BAG93340.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622028|gb|EEE56160.1| hypothetical protein OsJ_05062 [Oryza sativa Japonica Group]
Length = 747
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 24/305 (7%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M DLG+ART + YN++LK G + + M + +T D TY T + +
Sbjct: 198 MPDLGIARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKK 257
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---N 120
E ++ M+ D V D Y T+ N + + G L+ A +K +++ GA +
Sbjct: 258 MEAALRVFGDMK-DHGVTPDVTTYNTLLNAWVRAGDLESA----RKVFDEMPGAGFAQNS 312
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDD----LESAEK 175
+YNV++ Y + GK ++ + ++ E+ +K +++ + ++ L DD +E+ +
Sbjct: 313 VSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGL--CDDEGRVVEARKA 370
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV----KSWYYLA 231
+ + E + D + L+ CR G L+ A ++ H+K G+ HV + + L
Sbjct: 371 MDDMAERRLTPKDKSVFLRLVTTLCRAGDLDGALDV--HQK-SGQFKHVLVDPRQYGVLM 427
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA--ACLDYFKDEGDIGGAENFIEL 289
+ AVE M ++L L P +E A ++Y G+ AE F
Sbjct: 428 ESLCAGGKCDGAVEVMDELLEKGTLLSPKSPVLEGPAYNPVIEYLCSNGNTSKAETFFRQ 487
Query: 290 LNDKG 294
L KG
Sbjct: 488 LMKKG 492
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 122/318 (38%), Gaps = 24/318 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G A+ +V YN M+K Y + G E+ L EM E G+ T+ +
Sbjct: 302 EMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLC--- 358
Query: 63 DHEG----IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D EG K + M D ++ + + G LD AL + +KS Q K
Sbjct: 359 DDEGRVVEARKAMDDMAERRLTPKDKSVFLRLVTTLCRAGDLDGALDVHQKS-GQFKHVL 417
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWE--------LYKKAVKVLNNGYRNVISSLLKLDD 169
V+ Y V++ GK D + + + L K+ + Y VI L +
Sbjct: 418 VDPRQYGVLMESLCAGGKCDGAVEVMDELLEKGTLLSPKSPVLEGPAYNPVIEYLCSNGN 477
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
AE F + + + D N LI + + G+ E A+ ++ +G +S
Sbjct: 478 TSKAETFFRQLMKKGV-DDKAAFNSLIRGHAKEGVPEAAQEILAIMTRRGVRTDPESHAL 536
Query: 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289
L + + ++ A A+ ++ PS + + + G + A ++
Sbjct: 537 LVDSFLKKNEPADAKTALDSMMEQGHV-----PSPSLFMSVMVALFNSGRVQTASRVMKS 591
Query: 290 LNDKGFIPT-DLQDKLLD 306
+ +KG D+ K+L+
Sbjct: 592 MIEKGVTENMDMAHKILE 609
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 124/308 (40%), Gaps = 23/308 (7%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+D G+ YN++L + + G+ E + EM G + +Y + Y +A
Sbjct: 268 MKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGK 327
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGY----GKVGLLDKALAMLKKSEEQIKGAKV 119
E + + M + + L +A + G G+V ++ AM +E ++ K
Sbjct: 328 VEEAVGLFSEM-GEKGLRLSEKTFAALMPGLCDDEGRV--VEARKAMDDMAERRLT-PKD 383
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYK--KAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S + ++T + G D L + + K V V Y ++ SL + A ++
Sbjct: 384 KSVFLRLVTTLCRAGDLDGALDVHQKSGQFKHVLVDPRQYGVLMESLCAGGKCDGAVEVM 443
Query: 178 EEWESQALCYDTRIP-------NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
+E + + P N +I+ C NG KAE KG + ++ L
Sbjct: 444 DELLEKGTLLSPKSPVLEGPAYNPVIEYLCSNGNTSKAETFFRQLMKKGVDDKA-AFNSL 502
Query: 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
G+ + EA +++L A T + ES A +D F + + A+ ++ +
Sbjct: 503 IRGHAKEG----VPEAAQEIL-AIMTRRGVRTDPESHALLVDSFLKKNEPADAKTALDSM 557
Query: 291 NDKGFIPT 298
++G +P+
Sbjct: 558 MEQGHVPS 565
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 101/250 (40%), Gaps = 1/250 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR+ G+ V YN +++ G+ E L+ ME NG+ D+YTY + A
Sbjct: 358 LDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCK 417
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + +E + + V + TV NG K G D A L+K
Sbjct: 418 TGKVDEACSLFDGLEYR-GIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTY 476
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ I L G ++ + I E+ +K VK Y VI L K + A +I+ +
Sbjct: 477 TYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQM 536
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S D + YC G L +AEN+V K G + ++ L G+ +
Sbjct: 537 VSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKT 596
Query: 241 HKAVEAMKKV 250
AV +K +
Sbjct: 597 DHAVTILKHM 606
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 9/212 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM++LG T Y +++ L+ + E+ + +++EM +NG+ T ++AY
Sbjct: 253 LQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCR 312
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
G ++ M+ +PNV W A V G+ VG + KA+A+L + E
Sbjct: 313 EGRMSGAVRVFESMKLKGCEPNV---WTYNAMV-QGFCNVGKVYKAMALLDQMRECGVEP 368
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V + YN+++ G + R+ L + + Y +I +L K ++ A +
Sbjct: 369 DVVT-YNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSL 427
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
F+ E + + ++ N +I+ C+ G + A
Sbjct: 428 FDGLEYRGIRPNSVTFNTVINGLCKGGKFDVA 459
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 38/212 (17%)
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNG-YRNVISSLLKLDDLESAEK-- 175
+ + +LT + +Y +LR++ +Y Y +I +L + DL A++
Sbjct: 93 DRTFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYL 152
Query: 176 ---IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
+ W A + N LI YCR L+ A++L + L+G S+ L
Sbjct: 153 SLMVRSGWRPDAFTF-----NSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIE 207
Query: 233 GYRQNSQIHKAVEAMKKV----LAAYQTLVK----------------------WKPSVES 266
G+ + ++ +A+E +++ + + LVK W+P+ +
Sbjct: 208 GFCETGRVDEALELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRA 267
Query: 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
AA +D + E AE + + D G +P
Sbjct: 268 YAALVDLWCREQKAEEAEKMLNEMFDNGLVPC 299
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/241 (17%), Positives = 99/241 (41%), Gaps = 5/241 (2%)
Query: 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDK 69
A T YN++++ + + + M +G D +T+ + + Y +
Sbjct: 126 APTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQD 185
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129
+ M + D V YA + G+ + G +D+AL + ++ E+ + + ++ L
Sbjct: 186 LFDKMPLR-GFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVKGL 240
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
++ + + ++ + + Y ++ + E AEK+ E L
Sbjct: 241 CDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCA 300
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
+++ YCR G + A + KLKG E +V ++ + G+ +++KA+ + +
Sbjct: 301 VTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQ 360
Query: 250 V 250
+
Sbjct: 361 M 361
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 6/231 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNF-EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
GL ++ N +LK + + E LD L+H E G D ++Y L + D
Sbjct: 141 GLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 200
Query: 67 IDKILTMM-EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
D +L MM E + D V Y TV +G+ K G ++KA + K+ ++ + +V
Sbjct: 201 ADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSV 260
Query: 126 ILTLYGKYG--KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+ L K + LR ++ K V N Y N+I + A ++F+E Q
Sbjct: 261 VHALCKARAMDKAEAFLR--QMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQ 318
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
++ D N L+ C+ G +++A ++ + +KG+ V S+ + GY
Sbjct: 319 SILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY 369
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 115/287 (40%), Gaps = 40/287 (13%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++MR + V +N ++ K G ++ + M G D ++Y L+ YA
Sbjct: 313 KEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + +M D +A + + Y G+LDKA+ + + + G K N
Sbjct: 373 GCLVDMTDLFDLMLGD-GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDH--GVKPNV 429
Query: 122 -AYNVILTLYGKYGKKDDVL-RIWELYKKAV----------------------------K 151
Y ++ + GK DD + + ++ + V +
Sbjct: 430 LTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISE 489
Query: 152 VLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
++NNG + ++I++L KL + A+ IF+ + L + + L+D YC G
Sbjct: 490 IMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGK 549
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
+EKA + + G E + + L GY + +I + + +++L
Sbjct: 550 MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 15/220 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY---CTRLSA 57
+++M + G+ YN+++ Y TG +++ + EM I D T+ L
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCK 336
Query: 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG- 116
Y + + + M +P+V Y + NGY G L + + + G
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDV----FSYNIMLNGYATKGCLVDMTDLF----DLMLGD 388
Query: 117 --AKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
A V +NV++ Y G D + I+ E+ VK Y VI++L ++ ++ A
Sbjct: 389 GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDA 448
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ F + Q + D + LI +C +G L KA+ L++
Sbjct: 449 MEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELIS 488
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 7/174 (4%)
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY---GKYGKKDD 138
+D +I + G+ + D+AL +L ++ +Y+++L GK G+ DD
Sbjct: 144 VDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADD 203
Query: 139 VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
+LR+ Y VI K D+ A +F+E + + D + ++
Sbjct: 204 LLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHA 263
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEAMKKV 250
C+ ++KAE + KG + +W Y L GY Q +AV K++
Sbjct: 264 LCKARAMDKAEAFLRQMVNKG--VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 97/240 (40%), Gaps = 40/240 (16%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
++GL T VVY+ ++ Y G EK + M GI
Sbjct: 527 NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI--------------------- 565
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YN 124
+PN V+Y T+ NGY K+G +D+ L++ ++ + KG K ++ YN
Sbjct: 566 -----------EPN----DVVYGTLVNGYCKIGRIDEGLSLFREMLQ--KGIKPSTILYN 608
Query: 125 VILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+I+ + G+ ++ E+ + + + Y V+ L K + A +F+E +
Sbjct: 609 IIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAM 668
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ D N +I + +E+A++L G V ++ + T + + +A
Sbjct: 669 NVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEA 728
>gi|302763321|ref|XP_002965082.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
gi|300167315|gb|EFJ33920.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
Length = 731
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 124/282 (43%), Gaps = 8/282 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YNS++++Y K E + + M ++G++ D+ T+ T +SAYA + + ++ ME
Sbjct: 303 YNSLIEMYVKNDKLELVSGCLERMRDSGVSADQVTFRTLISAYAANNVVWKAEALVQEME 362
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
+D +Y + Y + + KA ++ + +G S Y ++ +Y ++
Sbjct: 363 GS-GFLIDQAMYTVMIAMYVRARDVPKAESVFRFLHS--RGGLEVSTYVGVMDVYAEHKC 419
Query: 136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195
D ++EL K A + Y ++ + D A +FE E + N L
Sbjct: 420 LDQAREVFELAKNAGLKTPSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSL 479
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ 255
I + C+ LLE + ++ K G + + S + + Y ++ +A K++LA+
Sbjct: 480 IQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLAS-- 537
Query: 256 TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ V +A L+ + + G A+ ++ L GF+P
Sbjct: 538 ---GVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVP 576
>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 114/242 (47%), Gaps = 11/242 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+N ++ Y K ++ +M E+E++G+ D +Y + A+ D +DK+L ME
Sbjct: 337 FNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQME 396
Query: 76 ---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYG 131
PNV + + + + GK +++AL + +K +++ G +S+ Y+ ++ + G
Sbjct: 397 HKGCKPNV----ITFTIIMHALGKAKQINEALKVYEKMKKE--GCVPDSSFYSSLIFILG 450
Query: 132 KYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
K G+ DV I E + K+ V Y +IS E+A + + E + D +
Sbjct: 451 KAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLK 510
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ L+ ++CR ++ + L++H I ++ L G +N ++H A ++
Sbjct: 511 TYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEM 570
Query: 251 LA 252
L+
Sbjct: 571 LS 572
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 108/240 (45%), Gaps = 15/240 (6%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V + +M+ Y K G EK ME G+ D T + LSA A +DK + +
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGL---LDKGIML 419
Query: 74 ME-ADPNVALDWVIYA-TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
E AD +VI A ++ + Y K +DKAL + + I V S ++IL L
Sbjct: 420 HEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHR----IPNKNVISWTSIILGLRL 475
Query: 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
Y + + L ++ ++K + +V+S+ ++ L ++I L +D +
Sbjct: 476 NY-RSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFL 534
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
PN L+D+Y R G +E A N N E V SW L TGY Q + AVE K++
Sbjct: 535 PNALLDMYVRCGRMEPAWNQFN-----SCEKDVASWNILLTGYAQQGKGGLAVELFHKMI 589
>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Cucumis
sativus]
Length = 830
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/356 (20%), Positives = 146/356 (41%), Gaps = 37/356 (10%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+ V N+++ + K G + S M +NG+ +D ++Y L A +
Sbjct: 270 SIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFT 329
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
ME V D V Y T+ G+ +GL+ A +++K Q + + Y ++ +
Sbjct: 330 DDMEKH-GVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVT-YTTLICGHC 387
Query: 132 KYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
+ G ++ L++ E + K+ Y ++S L K+ +E A +F+E E+ L D
Sbjct: 388 QMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFI 447
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA------- 243
+ + LI C+ G +++A L +LK + H + + G +N I +A
Sbjct: 448 VYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTW 507
Query: 244 ---------------------VEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDI 280
++ + + + Y +++ PSV + ++ F GD+
Sbjct: 508 TRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDL 567
Query: 281 GGAENFIELLNDKGFIPTDLQDKLLDN----VQNGKSNLETLRELYGNSLAGNEET 332
A +E++ KG +P+ + L N V N + L E+ N++ T
Sbjct: 568 MEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVT 623
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 129/301 (42%), Gaps = 20/301 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + G+ + V +N+++ + + G+ + ++ + G+ TY T ++AY +
Sbjct: 541 KMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVG 600
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ + + L MEA+ V V Y + G + + ++L +L+ KG +S
Sbjct: 601 NMQEMFHFLHEMEANAVVP-THVTYTVLIKGLCRQNKMHESLQLLEYMYA--KGLLPDSV 657
Query: 123 -YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG------YRNVISSLLKLDDLESAEK 175
YN I+ + K GK ++ + +LY + +L+N Y+ +I++L DL+ ++
Sbjct: 658 TYNTIIQCFCK-GK--EITKALQLYN--MMLLHNCDPTQVTYKVLINALCIFGDLKDVDR 712
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E + + +I +C G + KA N KG I ++ + +
Sbjct: 713 MVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLC 772
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ I +A +L+ T P E L+ F +G+ F+ ++ GF
Sbjct: 773 KRGLITEAKYFFVMMLSEGVT-----PDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSGF 827
Query: 296 I 296
I
Sbjct: 828 I 828
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 135/335 (40%), Gaps = 45/335 (13%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL + YN +L G+ ++ +ME++G+ D TY T + G
Sbjct: 301 GLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGA 360
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI 126
K++ M + D V Y T+ G+ ++G +++AL + + E +G K+N YN++
Sbjct: 361 RKVVQKMLLQ-GLNPDLVTYTTLICGHCQMGNIEEALKL--RQETLSRGFKLNVIFYNML 417
Query: 127 LTLYGKYGKKDDVL--------------------------------RIWELYK----KAV 150
L+ K G+ ++ L R ++LY+ K
Sbjct: 418 LSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRK 477
Query: 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
+ R V+ L K ++ A F+ W L D + N +ID Y R + +A
Sbjct: 478 FPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQ 537
Query: 211 LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270
L +G V ++ L G+ + + +A +K+L + L PSV +
Sbjct: 538 LYYKMIERGITPSVVTFNTLINGFCRRGDLMEA----RKMLEVIR-LKGLVPSVVTYTTL 592
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305
++ + + G++ +F+ + +PT + +L
Sbjct: 593 MNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVL 627
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 103/241 (42%), Gaps = 15/241 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM GL V Y +++ + + GN E+ L E G + Y LS
Sbjct: 364 VQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCK 423
Query: 61 ASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
I++ LT+ + + L D+++Y+ + +G K G + +A + ++ + K
Sbjct: 424 VGR---IEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPH 480
Query: 119 VNSAYNVILTLY--GKYGKKDDVLRIW---ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ V+L L+ G + + W +L + V Y +I ++LD + A
Sbjct: 481 HFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVL-----YNIMIDGYVRLDGIAEA 535
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+++ + + + N LI+ +CR G L +A ++ +LKG V ++ L
Sbjct: 536 MQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNA 595
Query: 234 Y 234
Y
Sbjct: 596 Y 596
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 8/255 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM++ G+ + Y ++++ K F+ L ME+NG+T D Y A
Sbjct: 516 ITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCK 575
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E L V L V Y ++ +G+ K G D A +++K + G K +
Sbjct: 576 SGRAEEAYSFLV----RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNE--GCKAD 629
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y+V+L K K ++ L I ++ VK Y +IS ++K + A+ +F
Sbjct: 630 LYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFN 689
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S I YC+ G +E+AE+L+ + G V ++ G
Sbjct: 690 EMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMG 749
Query: 239 QIHKAVEAMKKVLAA 253
I +A +K+++ A
Sbjct: 750 YIDRAFSTLKRMVDA 764
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 106/264 (40%), Gaps = 34/264 (12%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ++K K G L+ EM G+ +TY + Y + + I +ME
Sbjct: 287 YTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALME 346
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL------ 129
+ DW + + YG G L ++EE + GA ++T
Sbjct: 347 QNGCNPDDWTYNSLI---YGLCG------GKLDEAEELLNGAIARGFTPTVITFTNLING 397
Query: 130 YGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
Y K + DD LR+ + K+ Y +I+ L+K L+ A++ E + L +
Sbjct: 398 YCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPN 457
Query: 189 TRIPNFLIDVYCRNGLLEKA---ENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKA 243
+ID YC+ G++ A L+ HE H +W Y L G Q+ ++HKA
Sbjct: 458 VVTYTSIIDGYCKVGMVGAALEVFKLMEHEG-----CHPNAWTYGSLIYGLIQDKKLHKA 512
Query: 244 VEAMKKV--------LAAYQTLVK 259
+ + K+ + Y TL++
Sbjct: 513 MALITKMQEDGITPGVITYTTLIQ 536
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 25/253 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ V Y ++ K G + SL +EM +G TY +S+Y
Sbjct: 653 LDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCK 712
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------- 113
E + ++ ME D V D V Y NG G +G +D+A + LK+ +
Sbjct: 713 IGRIEEAEHLIGEMERD-GVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCW 771
Query: 114 ---------IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNV 160
+K + +N+ Y ++ ++ +W+L ++ +K N Y ++
Sbjct: 772 TYWLLLKHFLKMSLINAHYVDTSGMWNWI----ELNMVWQLLERMMKHGLNPTVVTYSSI 827
Query: 161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220
I+ K LE A + + + + + I LI C L KA + V G
Sbjct: 828 IAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGF 887
Query: 221 EIHVKSWYYLATG 233
+ ++S++YL G
Sbjct: 888 QPQLESYHYLIVG 900
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G +N +++ + ++ N EK + M E+G D +Y + A
Sbjct: 139 LEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAK 198
Query: 61 ASDHEGIDKILTMMEAD-----PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
+ KIL+ M PNV + ++T+ +G + G L+KAL + E
Sbjct: 199 IGKLDESLKILSEMAMRAAGYVPNV----ITFSTLIHGLCRTGELEKALEVFGSMLEA-- 252
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL----NNGYRNVISSLLKLDDLE 171
G K N TL + + V++ EL++K + Y ++I+ K ++
Sbjct: 253 GCKPNK--YTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMD 310
Query: 172 SAEKIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
AEK++ E A T + N LID +C+ G L +A LV KG ++ L
Sbjct: 311 EAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRIL 370
Query: 231 ATGYRQNSQIHKAVEAMKKV 250
G + +++ +A+E K++
Sbjct: 371 IAGLSRATKLDEALEVYKQM 390
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 136/336 (40%), Gaps = 49/336 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEME-ENGITYDRYTYCTRLSAYA 59
+ M+ + V YN ++ G F K L M+ E + DR+TY T +S
Sbjct: 33 FETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLC 92
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + EG K+L+ M D N+A + Y+++ K +++ +L E++ A
Sbjct: 93 SSGNTEGARKLLSEMR-DKNIAANVFTYSSIIKSLVKEAKPEESYKVL----EEMMAAGC 147
Query: 120 NS---AYNVILTLYGKYGKKDDVLRIWELYKKAV----KVLNNGYRNVISSLLKLDDLES 172
N A+N ++ + + +++ + E+Y+ V K N Y +I L K+ L+
Sbjct: 148 NPDVFAFNGVMQ---GFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDE 204
Query: 173 AEKIFEEWESQALCYDTRIPNF--LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
+ KI E +A Y + F LI CR G LEKA + G + + ++ L
Sbjct: 205 SLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTL 264
Query: 231 ATGYRQNSQIHKAVEAMKKVL--------AAYQTLVK----------------------- 259
G + ++ +A E +K+ AY +L+
Sbjct: 265 IAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG 324
Query: 260 WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+P++ + +D F G +G A + + KG
Sbjct: 325 LQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 360
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 4/185 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYA 59
+KM + V YNS++ Y K G+ ++ + L EM G+ T+ T + +
Sbjct: 281 FEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFC 340
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++++ M +A D Y + G + LD+AL + K+ E+
Sbjct: 341 KLGKLGRANELVAEM-GTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDP 399
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
S + + L K G D ++E +K+ V N +R + SL+KL +E A+K+ E
Sbjct: 400 VSCVSFVGGLC-KTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458
Query: 179 EWESQ 183
+++
Sbjct: 459 PAKAR 463
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/406 (19%), Positives = 162/406 (39%), Gaps = 75/406 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT---RLSA 57
M +M + G+ VVY+S+L+ Y K+G +E + + EM E GI D Y L
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232
Query: 58 YADASDHEGIDKILTMMEADPNV-------------------------------ALDWVI 86
A G+ ++ +PNV A D V
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVT 292
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA----YNVILTLYGKYGKKDDVLRI 142
Y T+ G V +D+A+ +L EE ++G + +N ++ G+ ++
Sbjct: 293 YNTLIKGLSDVLEMDEAMWLL---EEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV 349
Query: 143 WELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
+ ++ ++N Y +I LL++ + A ++ +E S L D+ + LI +C+
Sbjct: 350 RAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCK 409
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV-------LAAY 254
+++AE+L++ + +G E + + L + + +A ++ + AY
Sbjct: 410 MWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAY 469
Query: 255 QTLVK----------------------WKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
T++ P + + ++ F GD+ A ++ +
Sbjct: 470 STMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTA 529
Query: 293 KGFIP-TDLQDKLLDNVQN-GKSN--LETLRELYGNSLAGNEETLS 334
GF+P + D L+ G+ N LE +RE+ ++A + + +S
Sbjct: 530 SGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIIS 575
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 128/301 (42%), Gaps = 12/301 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ MR G+ V Y ++++ +K LM EM E+GI + Y + L Y
Sbjct: 138 LRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCK 197
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + K+ M ++ + D V+Y + + KVG KA ++ +G + N
Sbjct: 198 SGRWEDVGKVFVEM-SEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVR--RGLEPN 254
Query: 121 SA-YNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ K G K+ + + ++ +K V Y +I L + +++ A + E
Sbjct: 255 VVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLE 314
Query: 179 EWESQALCYDTRIPNF--LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E + F +I C G + +A + + G +++ ++ L G +
Sbjct: 315 EMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLR 374
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ KA+E M ++ T + +P + + + F + AE+ + + D+G
Sbjct: 375 VHKVRKAMELMDEM-----TSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIE 429
Query: 297 P 297
P
Sbjct: 430 P 430
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 120/261 (45%), Gaps = 15/261 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITY-DRYTYCTRLSAYA 59
+++M + G + TV +N ++ +T + ++ ++ +G+ + T+ + +S Y
Sbjct: 105 VERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYC 164
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A E + M A + + V Y + NGYGKVG L A+ + ++ +++
Sbjct: 165 KAGKLEDAMAVYNDMVAS-GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT-RLRCPPD 222
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
++ ++ Y + G+ DD LRIW ++ + ++ + +I SL K + + A +
Sbjct: 223 VVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLN 282
Query: 179 EWE------SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
E QA Y N +IDV C+ G +++A + + KG ++ L
Sbjct: 283 ELNLRPDIAPQAFIY-----NPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILII 337
Query: 233 GYRQNSQIHKAVEAMKKVLAA 253
GY S+I +A+ +++ A
Sbjct: 338 GYCMKSRISEAIMFFHEMVEA 358
>gi|115529193|dbj|BAF34329.1| pentatricopeptide repeat protein [Physcomitrella patens]
gi|115529195|dbj|BAF34330.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 513
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ++ Y + GN + + + MEE GI D + ++AY A E + ++L
Sbjct: 176 YTKLIDKYGREGNVVEAEQMFRIMEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQ--- 232
Query: 76 ADPNVA---LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
D ++A LD V Y TV YG VG+ +A +L S E AY +L YG+
Sbjct: 233 -DVSLAGLELDAVFYKTVIVAYGSVGMPKEAEDVL-SSMESAGVPDGKDAYLALLNAYGR 290
Query: 133 YGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
G D R+++ ++ K + + ++ + D +AE +F+ + L D R
Sbjct: 291 LGHASDAQRVFDRMHLKGFRGDLKAFTALLEAYSNAQDYANAELVFQSLRAAGLKPDDRA 350
Query: 192 PNFLIDVYCRNGLLEKAENLV 212
++ VY + +L +A ++
Sbjct: 351 LASMVSVYAKANMLNRAAEVI 371
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 9/194 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M G+ Y ++L Y + G+ + M G D + L AY++
Sbjct: 266 LSSMESAGVPDGKDAYLALLNAYGRLGHASDAQRVFDRMHLKGFRGDLKAFTALLEAYSN 325
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A D+ + + + A + D A++ + Y K +L++A ++ +++GA +
Sbjct: 326 AQDYANAELVFQSLRA-AGLKPDDRALASMVSVYAKANMLNRAAEVIV----ELEGAGMR 380
Query: 121 SAYNVILTLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ +L G +GK V EL +K + + Y N+ ++ + +LE+A I
Sbjct: 381 FGPVTLTSLIGWFGKAGLVEEAKHCFQELKRKRLPISGKAYANMFAAYARAGELETAGSI 440
Query: 177 FEEWESQALCYDTR 190
+ E + D R
Sbjct: 441 WASIEEAGIELDHR 454
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 100/244 (40%), Gaps = 9/244 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + G+ + ++ Y + EK+ ++ ++ G+ D Y T + AY
Sbjct: 199 MEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQDVSLAGLELDAVFYKTVIVAYGSVGM 258
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ + +L+ ME+ V Y + N YG++G A + + +KG + + A
Sbjct: 259 PKEAEDVLSSMES-AGVPDGKDAYLALLNAYGRLGHASDAQRVFDRM--HLKGFRGDLKA 315
Query: 123 YNVILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ +L Y Y + V + L +K + +++S K + L A ++ E
Sbjct: 316 FTALLEAYSNAQDYANAELVFQ--SLRAAGLKPDDRALASMVSVYAKANMLNRAAEVIVE 373
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E + + LI + + GL+E+A++ K K I K++ + Y + +
Sbjct: 374 LEGAGMRFGPVTLTSLIGWFGKAGLVEEAKHCFQELKRKRLPISGKAYANMFAAYARAGE 433
Query: 240 IHKA 243
+ A
Sbjct: 434 LETA 437
>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 114/242 (47%), Gaps = 11/242 (4%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+N ++ Y K ++ +M E+E++G+ D +Y + A+ D +DK+L ME
Sbjct: 314 FNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQME 373
Query: 76 ---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYG 131
PNV + + + + GK +++AL + +K +++ G +S+ Y+ ++ + G
Sbjct: 374 HKGCKPNV----ITFTIIMHALGKAKQINEALKVYEKMKKE--GCVPDSSFYSSLIFILG 427
Query: 132 KYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
K G+ DV I E + K+ V Y +IS E+A + + E + D +
Sbjct: 428 KAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLK 487
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ L+ ++CR ++ + L++H I ++ L G +N ++H A ++
Sbjct: 488 TYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEM 547
Query: 251 LA 252
L+
Sbjct: 548 LS 549
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 133/322 (41%), Gaps = 28/322 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + G+ + V Y ++ + E + +M GI D TY + +Y +
Sbjct: 410 LEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCE 469
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + ++ M D V + V Y T+ GY +GL+ +A + + KG K N
Sbjct: 470 EGRMEDAESMIVQM-VDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVG--KGWKPN 526
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-------------ELYKKAVKVLNNGYRNVISSLLK 166
+Y V+L L K D+ + IW ++ ++ + + + Y I L +
Sbjct: 527 EDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCR 586
Query: 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
+D LE A+ F ++ L + +ID CR +L A L++ G H++S
Sbjct: 587 VDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLES 646
Query: 227 WYYLATGYRQNSQIHKAVEAMKKVL---AAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283
+ + + + A E +L + Y +V WK + L +G +
Sbjct: 647 YRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIV-WKILIYGLL-------QKGSVAEF 698
Query: 284 ENFIELLNDKGFIPTDLQDKLL 305
+ + ++ + G+ P++ + ++
Sbjct: 699 SSLLSVMKEHGYQPSNTINAMI 720
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 116/267 (43%), Gaps = 10/267 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M + GL V Y ++++ G+ + L+H ME NG+ + +T+ + A
Sbjct: 271 SRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKR 330
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
E L + V ++ V+Y ++ +G K G +D A +++K + +S
Sbjct: 331 EKVEEAQLFLGSL-VKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
++I L + L + ++ +K ++ Y +I L++ E +KIF++
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + D + YC G +E AE+++ +G ++ ++ L GY +
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVS 509
Query: 242 KAVEAMKKVLAAYQTLV--KWKPSVES 266
+A + ++ +V WKP+ +S
Sbjct: 510 QA-------FSTFEVMVGKGWKPNEDS 529
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 120/295 (40%), Gaps = 16/295 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G VVYN+++ Y G E + M+ N + + TY + + E
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266
Query: 68 DKILT-MMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AY 123
+ + M+EA +PNV V Y + G G L A +L E G N +
Sbjct: 267 MVLFSRMVEAGLEPNV----VTYTALIQGQCNEGHLQCAFRLLHLMETN--GLVPNDWTF 320
Query: 124 NVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+V++ K K ++ L + L KK VKV Y ++I L K +++A+++ ++ S
Sbjct: 321 SVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMIS 380
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D + LID CR L +A ++ KG + ++ + +
Sbjct: 381 EGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEG 440
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ K++A P + + + + +EG + AE+ I + D+G P
Sbjct: 441 PKKIFDKMIAT-----GINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFP 490
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 120/288 (41%), Gaps = 20/288 (6%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
N++L + F ++SL M + TY T ++AY A D + LT +
Sbjct: 45 NTLLMALARHRMFPDMESLASRMPARNLR----TYTTLINAYCLAGDIPAAKQHLTSL-L 99
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK- 135
+A D Y + GY + G+L A + ++G + +A+ L+G G
Sbjct: 100 HAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMP--LRGC-LRTAFTYTALLHGLLGAG 156
Query: 136 --KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
++ + + + + Y ++ L + E AE + EE S + + N
Sbjct: 157 MVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYN 216
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREI--HVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
LID YC G +E A L E + G +V+++ L G ++ ++ +A+ +++
Sbjct: 217 ALIDGYCNAGEMEHA--LKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV 274
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
A +P+V + A + +EG + A + L+ G +P D
Sbjct: 275 EA-----GLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPND 317
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 137/326 (42%), Gaps = 18/326 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M L + + +N M+ + K G +K + ME +G+ + TY T + Y +
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E D ILT M+ + D Y ++ +G K G L++A + EE ++ SA
Sbjct: 271 RVEAADAILTTMKRQ-KIEPDSFTYGSLISGMCKQGRLEEASKIF---EEMVQKGLRPSA 326
Query: 123 --YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++ + G D E+ KK + + Y ++I +L + AE + +E
Sbjct: 327 VIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + D N LI+ YCR +KA L + G + K++ L + ++
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNR 446
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A + KK+ T P V A +D ++ GA ELL D +
Sbjct: 447 MKEADDLFKKI-----TSEGVLPDVIMFNALIDGHCSNSNVKGA---FELLKDMDRMKVP 498
Query: 300 LQDKLLDNVQNG---KSNLETLRELY 322
+ + + G + +E REL+
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELF 524
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 130/306 (42%), Gaps = 20/306 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA-YA 59
++M GL + V+YN+++ + GN + + EM + GI+ TY + + A +
Sbjct: 314 FEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFM 373
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E I + E ++ D + Y + NGY + KA + +++ + +
Sbjct: 374 EQRTDEAECMIKEIQEK--GISPDAITYNILINGYCRCANAKKAFLL----HDEMLASGI 427
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNN--GYRNVISSLLKLDDLESAEK 175
+L KK+ + +L+KK VL + + +I +++ A +
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFE 487
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ ++ + + D N ++ +CR G +E+A L + K +G + S+ L +GY
Sbjct: 488 LLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYS 547
Query: 236 QNSQIHKAVEAMKKVL--AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+ I A ++L T++ + V+ L EGD+ AE ++ + K
Sbjct: 548 RRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCK-----NQEGDL--AEELLKEMVSK 600
Query: 294 GFIPTD 299
G P D
Sbjct: 601 GMTPDD 606
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 105/234 (44%), Gaps = 3/234 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++++++ G++ + YN ++ Y + N +K L EM +GI + TY + L +
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSK 443
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + D + + ++ V D +++ + +G+ + A +L K +++K
Sbjct: 444 KNRMKEADDLFKKITSE-GVLPDVIMFNALIDGHCSNSNVKGAFELL-KDMDRMKVPPDE 501
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N I+ + + GK ++ ++ E+ ++ +K + + +IS + D++ A ++ E
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNE 561
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
N L+ C+N + AE L+ KG +++ L G
Sbjct: 562 MLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEG 615
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 106/216 (49%), Gaps = 10/216 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITY-DRYTYCTRLSAYA 59
+ +M LG+ V YNS++ Y K FE++D +++M ENG ++ D +T + + AY
Sbjct: 218 LAEMSYLGIKCNCVTYNSIIDGYGKASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAYG 277
Query: 60 DASDHEGIDKI---LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+A + ++K +M P D + T+ YGK G+ +K ++ E++
Sbjct: 278 NAGQIDKMEKWYDEFQLMGIKP----DITTFNTMIKSYGKAGMYEKMKTVMDFMEKRFFT 333
Query: 117 AKVNSAYNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ + YN ++ ++GK G+ + + ++ VK + Y +++S+ K+ ++ +
Sbjct: 334 PTIVT-YNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNSITYCSLVSAYSKVGCIDKVDS 392
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
I E+ + DT N +I Y + G L+K L
Sbjct: 393 IMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGEL 428
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 91/204 (44%), Gaps = 8/204 (3%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y+ +++ K F+ ++ ++ EM GI + TY + + Y AS E +D L M
Sbjct: 197 TYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQMDDALNDM 256
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK--SEEQIKGAKVN-SAYNVILTLYG 131
+ N D + YG G +DK ++K E Q+ G K + + +N ++ YG
Sbjct: 257 IENGNSHPDVFTLNSFVGAYGNAGQIDK----MEKWYDEFQLMGIKPDITTFNTMIKSYG 312
Query: 132 KYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
K G + + + + +K Y VI K ++E ++ F + + + ++
Sbjct: 313 KAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNSI 372
Query: 191 IPNFLIDVYCRNGLLEKAENLVNH 214
L+ Y + G ++K ++++ H
Sbjct: 373 TYCSLVSAYSKVGCIDKVDSIMRH 396
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+ LG+ ++ Y S++ Y K G +K+DS+M +E + + D + +SAY A
Sbjct: 361 KMKHLGVKPNSITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAG 420
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD 101
+ + + ++ M + D + +A + Y G+ +
Sbjct: 421 NLKKMGELFLAMR-ERKCEPDNITFACMIQSYNTQGMTE 458
>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 737
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 123/305 (40%), Gaps = 40/305 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ +G+ V YN ++K Y E L+ EM G D+ +Y T +
Sbjct: 229 LERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQ 288
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ++ M D + D V Y T+ + K G D+AL L+++EE +G +V+
Sbjct: 289 DKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEE--RGFQVD 346
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
GY +++S ++ A++I E
Sbjct: 347 KV---------------------------------GYSAIVNSFCMQGRMDRAKEIVNEM 373
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ D +++ C+ G +E+A+ ++ G + + S+ L G Q+
Sbjct: 374 ITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNS 433
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+A E M + W P+ + + + + EG + A + + + KGF PT +
Sbjct: 434 LEAREMMNTSEEDW-----WTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPV 488
Query: 301 QDKLL 305
+ LL
Sbjct: 489 EINLL 493
>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
Length = 1095
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 123/285 (43%), Gaps = 12/285 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM++ L V YN++L Y K G + ++ +ME+NGI D YTY +
Sbjct: 253 LQKMKNCRLP-NAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCK 311
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+L M + N+ D Y T+ +G+ G ++ A+ + + Q V
Sbjct: 312 LKRSARAYLLLKRMR-EVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSV- 369
Query: 121 SAYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y ++ Y + G+ D+ R+ +E+ V+ Y +++ K L A + +
Sbjct: 370 ATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKY 429
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S+++ + + LID +C+ G + KA+ ++ G + V ++ L G +
Sbjct: 430 LRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGM 489
Query: 240 IHKAVEAMKKVLAA--------YQTLVKWKPSVESLAACLDYFKD 276
IH+ E + ++ + Y TLV + L YF D
Sbjct: 490 IHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVD 534
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 111/255 (43%), Gaps = 13/255 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G+ + + Y+++L Y K L+ + I+ +R Y + +
Sbjct: 394 EMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLG 453
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ +IL M AD + D + Y+ + NG K+G++ + +L S Q G N+
Sbjct: 454 EVSKAKQILKCMLAD-GIDPDVITYSALINGMCKMGMIHETKEIL--SRMQKSGVLPNNV 510
Query: 123 -YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++ + K G + L+ + ++Y+ + + + ++ S + + AE+ +
Sbjct: 511 LYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYM 570
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKA----ENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ +D N +ID YC+ G + +A +N+V H G + ++ L G Q
Sbjct: 571 SRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRH----GWPPDICTYGSLLRGLCQ 626
Query: 237 NSQIHKAVEAMKKVL 251
+ +A E M +L
Sbjct: 627 GGHLVQAKEFMVYLL 641
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 2/219 (0%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM + T Y +L + K G L+ M E G+ D Y L+ +
Sbjct: 673 EKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNE 732
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + + + D + Y ++ NGY K G +++ +++ E + ++
Sbjct: 733 GQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHEN-EVYPSSA 791
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+YN+++ Y K G+ L ++ ++ K+ +K N YR +I L + +E A K E+
Sbjct: 792 SYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKM 851
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ + D + LI + + A L ++ K G
Sbjct: 852 VLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVG 890
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 62/333 (18%), Positives = 133/333 (39%), Gaps = 31/333 (9%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL + YNSM+ Y K G +++ LM M EN + +Y + Y +
Sbjct: 750 GLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQ---L 806
Query: 68 DKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA-KVNSAYN 124
+ L + + D V Y + G + GL++ A+ L+K ++G N A++
Sbjct: 807 SRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKM--VLEGVFPDNLAFD 864
Query: 125 VILTLYGKYGKKDDVLRIWELYK---------------KAVKVLNN--GYRNVISSLLKL 167
+++ + + K + L+++ K KA+ V+ + +++ L K
Sbjct: 865 ILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKC 924
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+E A +F + L+ C+ ++ A +L + G ++ V ++
Sbjct: 925 GKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTY 984
Query: 228 YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
L TG I A++ +++ + P++ + G + E +
Sbjct: 985 NVLITGLCNKKCICDALDLYEEMKSK-----GLLPNITTYITLTGAMYATGTMQDGEKLL 1039
Query: 288 ELLNDKGFIPTDLQDKLLD-NVQNGKSNLETLR 319
+ + D+G +P+ + L+ ++N L T+R
Sbjct: 1040 KDIEDRGIVPSYKHPESLEWRMENAIKRLNTIR 1072
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+MR G V YN ++ Y + + + ++M+E G + DR TYCT + ++
Sbjct: 90 LQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSK 149
Query: 61 ASDHE-GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A H+ +D M +A D Y+ + + GK G + +AL + ++ E+ +
Sbjct: 150 AGFHDNAMDMYQKMQQA--GFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSL 207
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN+I+ L K G ++++ ++ Y ++ L ++ L+ AE +F
Sbjct: 208 VT-YNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFN 266
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E E D I ++D++ + E+A
Sbjct: 267 EMEQAGWVPDAPIYGVMVDMWGKARNAERA 296
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 10/293 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G Y +M+ + + NFE L+ EM G TY + AY A+
Sbjct: 62 GYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEA 121
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+I M+ + + D V Y T+ + + K G D A+ M +K ++ G + ++ Y+VI
Sbjct: 122 MRIFYQMQEE-GCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQ--AGFQPDTFTYSVI 178
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ GK GK + L+++ E+ ++ Y +I K + A K++ + +
Sbjct: 179 IHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGF 238
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D + +++V + G L++AE + N + G + + + + +A+E
Sbjct: 239 HPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALE 298
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+K+L + T P+V+ + L + A IE + G +PT
Sbjct: 299 WYQKMLDSGLT-----PNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPT 346
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 134/333 (40%), Gaps = 41/333 (12%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR+ G TV YN ++ ++G E+ +ME+ G+ D +TY ++ +
Sbjct: 247 EMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 306
Query: 63 DHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+L M E PNV V+YA + +G+ + G D+A M+K E G +
Sbjct: 307 RSNEAKALLDEMSCAELKPNV----VVYANLIDGFMREGNADEAFKMIK--EMVAAGVQP 360
Query: 120 NS-AYNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N Y+ ++ K G+ D L + ++ + + + Y +I + + A ++
Sbjct: 361 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLL 420
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E E+ + + + +I C++G EKA +L+ KG + + + L +GY +
Sbjct: 421 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCRE 480
Query: 238 SQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKD------------- 276
+ A E K+ L Y +L+ V + YF
Sbjct: 481 GNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTY 540
Query: 277 ---------EGDIGGAENFIELLNDKGFIPTDL 300
GD+ AE ++ + D G P D+
Sbjct: 541 SGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 573
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 127/322 (39%), Gaps = 45/322 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M D GL V+Y +L+ Y+K+ + EK+ S M + G+ D Y + +
Sbjct: 560 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 619
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + E ++L+ +E + +V D +Y+++ +G K +KA +L
Sbjct: 620 SGNMEAAFRVLSGIEKNGSVP-DVHVYSSLISGLCKTADREKAFGILD------------ 666
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
E+ KK V Y +I L K D+ A +F
Sbjct: 667 -----------------------EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 703
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ L + LID C+ G + A L N G + L TG +
Sbjct: 704 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 763
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+A+ ++++ ++ S+ S +D F G + + ++ +G +P L
Sbjct: 764 EQAMFLIEEM------FLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 817
Query: 301 QDKLLDNVQNGKSNLETLRELY 322
++N+ +G S L E++
Sbjct: 818 T---IENIISGLSEAGKLSEVH 836
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 136/336 (40%), Gaps = 13/336 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + + YNS++ K G E+ +M+E G+ + +TY + Y
Sbjct: 492 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNG 551
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NS 121
D E ++++ M D + + VIY + Y K ++K + K +Q G + N
Sbjct: 552 DLESAEQLVQRM-LDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ--GVMLDNR 608
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEW 180
Y +++ G + R+ +K V + + Y ++IS L K D E A I +E
Sbjct: 609 IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 668
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + + N LID C++G + A N+ N KG + ++ L G + I
Sbjct: 669 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 728
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
A ++LA T + SV + GD+ A IE + +G
Sbjct: 729 SNAFYLYNEMLATGITPDAFVYSVLTTGC-----SSAGDLEQAMFLIEEMFLRGHASISS 783
Query: 301 QDKLLDNVQNGKSNLETLRELY---GNSLAGNEETL 333
+ L+D ETL+ L+ G L N T+
Sbjct: 784 FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 819
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 44/282 (15%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEM-----EENGITYDR--------------- 48
L VVY +++ + + GN ++ ++ EM + N ITYD
Sbjct: 323 LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 382
Query: 49 ---------------YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG 93
TY + + + ++L+ ME + ++ + Y+ + +G
Sbjct: 383 LLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEME-NAGISPNVYTYSIMIHG 441
Query: 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK-- 151
+ G +KA +L+ E KG K N+ V L Y ++ +V E++ K K
Sbjct: 442 LCQSGEPEKASDLLE--EMTTKGLKPNAF--VYAPLISGYCREGNVSLACEIFDKMTKVN 497
Query: 152 VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
VL + Y ++I L K+ +E + K F + + + L + + LI Y +NG LE AE
Sbjct: 498 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 557
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
LV G + + + L Y ++ I K K +L
Sbjct: 558 QLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 599
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 10/296 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G Y +++ +G + L H M +G+ + TY ++ +
Sbjct: 516 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 575
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ +L +M + + + V Y + GY +G D AML + +G N
Sbjct: 576 IKYAFVVLNLMGRN-GLFTNIVTYNEMIKGYCILG--DPKKAMLVMNNMLQRGHSANLVT 632
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN I+ Y G LRI +L + K Y +I K+ +ESA +F E
Sbjct: 633 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 692
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
LC + LID YC++ L+ A +L+ H K G +V+++ L G + +
Sbjct: 693 DDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFS 752
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A E + KV+ P+V + A +D G A + ++G +P
Sbjct: 753 GA-EELCKVMIEEGIF----PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLP 803
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 127/310 (40%), Gaps = 34/310 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M G+ ++YN+++ K GN +++M ++ E+ ++ D +TY + + +
Sbjct: 374 HRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRK 433
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + ++ M +PN V Y+T+ NG G +++A +++ E I
Sbjct: 434 HDLDSALQVFNQMAKEGCEPNT----VTYSTLINGLCDSGRVNEAFDLIR---EMILHGI 486
Query: 119 VNSAYNVI--LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ +A+ + G +D R++ ++ K + Y +IS L L+ A
Sbjct: 487 LPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIG 546
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F + +T N LI++ N ++ A ++N G ++ ++ + GY
Sbjct: 547 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYC 606
Query: 236 QNSQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
KA+ M + L Y T++K + D G+ A +
Sbjct: 607 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG-------------YCDSGNTTSALRIL 653
Query: 288 ELLNDKGFIP 297
+L+ D G P
Sbjct: 654 DLMRDGGCKP 663
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M G + V YN+++K Y +GN ++ M + G D ++Y + +
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 677
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S E + M D + + V Y + +GY K LD A ++L+ + G + N
Sbjct: 678 ISKMESAFGLFNEM-VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS--GCRPN 734
Query: 121 -SAYNVI---LTLYGKYGKKDDVLRIW-----------------------------ELYK 147
YNV+ LT + +++ ++ E++
Sbjct: 735 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 794
Query: 148 KAVK--VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
K ++ L N Y ++I +L + +E AE +F E E L D +I+ Y +G
Sbjct: 795 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 854
Query: 204 LLEKAENLV 212
+E A N +
Sbjct: 855 KVEHAFNFL 863
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 115/297 (38%), Gaps = 19/297 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM + G + Y+S+++ + G E+ ++L E+E +G+ D TY + AY +
Sbjct: 795 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 854
Query: 63 DHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
E L M++A L W + + L D+ LA L +
Sbjct: 855 KVEHAFNFLGRMIKAGCQPTL-WTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTT 913
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+ + + K + D L +V+V N ++S+L A ++
Sbjct: 914 DQDAVSVMSAKLAELDPGL--------SVQVQN----ALVSNLSTAGRWFEANELLGSMI 961
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
SQ LC D N L+ R ++ A + H +G E+H+ + L Q+H
Sbjct: 962 SQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICAL---CQLH 1018
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ EA ++ + W P A +D +G F+ ++ + ++P+
Sbjct: 1019 RRKEA--RITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 1073
>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
Length = 731
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 124/285 (43%), Gaps = 8/285 (2%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
YNS++++Y K E + + M ++G++ D+ T+ T +SAYA + + ++
Sbjct: 300 VATYNSLIEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISAYAANNVVWKAEALVQ 359
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
ME +D +Y + Y + + KA ++ + +G S Y ++ +Y +
Sbjct: 360 EMEGS-GFFIDQAMYTVMIAMYVRARDVSKAESVFRFLHS--RGGLEVSTYVGVMDVYAE 416
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ D ++EL K A + Y ++ + D A +FE E +
Sbjct: 417 HKCLDQAREVFELAKNAGLKTPSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASF 476
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
N LI + C+ LLE + ++ K G + + S + + Y ++ +A K++LA
Sbjct: 477 NSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLA 536
Query: 253 AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + V +A L+ + + G A+ ++ L GF+P
Sbjct: 537 S-----GVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVP 576
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 135/310 (43%), Gaps = 8/310 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM++ G+ YN ++ K G + + EM E G++ + TY T +
Sbjct: 257 EKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCRE 316
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+K++ M++D + + + Y T+ +G+ VG L KAL++ + + + +
Sbjct: 317 MKLNEANKVVDQMKSD-GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL-V 374
Query: 122 AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN++++ + + G + + E+ ++ +K Y +I + + D++E A ++
Sbjct: 375 TYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSM 434
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E L D + LI +C G + +A L K E + + + GY +
Sbjct: 435 EELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSS 494
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
++A++ +K++ + P+V S ++ E AE +E + D G P+
Sbjct: 495 YRALKLLKEMEEK-----ELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTS 549
Query: 301 QDKLLDNVQN 310
L+ +N
Sbjct: 550 ILSLISRAKN 559
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 113/297 (38%), Gaps = 45/297 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++ + G + V+Y +++ K G EK L EM + G+ + TY +
Sbjct: 188 ELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI------- 240
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
NG K G+ + M +K +E G N
Sbjct: 241 -----------------------------NGLFKNGVKKQGFEMYEKMQED--GVFPNLY 269
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ K G+ D +++ E+ ++ V Y +I L + L A K+ ++
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+S + + N LID +C G L KA +L K +G + ++ L +G+ +
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDT 389
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A + +K++ KPS + +D F ++ A + + G +P
Sbjct: 390 SGAAKMVKEMEER-----GIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVP 441
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 9/242 (3%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
Y +++ + + G EK + + +M+E G+ D Y Y + AY+ A G +I ++
Sbjct: 296 CTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSL 355
Query: 74 ME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
M+ +P D Y + + YGK G D A A+ K +++ ++ V+L+ Y
Sbjct: 356 MQHMGCEP----DRASYNILVDAYGKAGFQDDAEAVF-KDMKRVGITPTMKSHMVLLSAY 410
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K G + I ++ K +K+ ++++ +L E++ E + D
Sbjct: 411 SKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADI 470
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N LI+ Y + G +E+ E+L KG + V +W Y + K +E ++
Sbjct: 471 STYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEE 530
Query: 250 VL 251
++
Sbjct: 531 MI 532
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 42/248 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR+ GL + VVYN+ + K GN +K + + M+++ TY ++ Y A
Sbjct: 215 EMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAG 274
Query: 63 DHEGIDKIL-TMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE------- 112
K+ MM D PN+ Y + N + + GL +KA + ++ +E
Sbjct: 275 KSFMALKLFHEMMSHDCKPNIC----TYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDV 330
Query: 113 --------------------------QIKGAKVNSA-YNVILTLYGKYGKKDDVLRIWEL 145
Q G + + A YN+++ YGK G +DD +++
Sbjct: 331 YAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKD 390
Query: 146 YKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
K+ + + ++S+ K+ + E+I + L DT + N ++++Y R G
Sbjct: 391 MKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQ 450
Query: 205 LEKAENLV 212
K E ++
Sbjct: 451 FGKMEEVL 458
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ +G+ T + +L Y K G+ K + ++++M ++G+ D Y + L+ Y
Sbjct: 391 MKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQ 450
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
++++L +ME VA D Y + N YG+ G +++ + + KG K +
Sbjct: 451 FGKMEEVLRVMEKGSYVA-DISTYNILINRYGQAGFIERMEDLFQLLPS--KGLKPDVV- 506
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAV 150
+ G Y KK L+ E++++ +
Sbjct: 507 -TWTSRIGAYSKKKLYLKCLEIFEEMI 532
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M GL T V NSML LY + G F K++ ++ ME+ D TY ++ Y
Sbjct: 423 LNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQ 482
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
A E ++ + ++ + + D V + + Y K L K L + ++
Sbjct: 483 AGFIERMEDLFQLLPSK-GLKPDVVTWTSRIGAYSKKKLYLKCLEIFEE 530
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 41/321 (12%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENG-ITYDRYTYCTRLSAYADASDHEGIDKILT 72
V YN+++ + G + +M EM E G I D+YTY T +S + E K+
Sbjct: 148 VTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFD 207
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALA----MLKKS------------------ 110
M VA V+Y + GY VG LD AL M+++
Sbjct: 208 EMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMD 267
Query: 111 -----------EEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGY 157
E Q G + YN+++ Y K G + L ++ E+ +K V+ Y
Sbjct: 268 ARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTY 327
Query: 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
++I + ++ +++F + + D + N LI+ +C G +E+A ++ +
Sbjct: 328 TSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEK 387
Query: 218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE 277
K ++ L G+ ++ +A + L T +P + S + + +
Sbjct: 388 KRIPPDDMTYNTLMRGFCLLGRLDEA-----RTLIDEMTKRGIQPDLVSYNTLISGYSMK 442
Query: 278 GDIGGAENFIELLNDKGFIPT 298
GDI A + + DKGF PT
Sbjct: 443 GDIKDALRVRDEMMDKGFNPT 463
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 49/302 (16%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ M G+A T YN ++ + +++ EM++NG + D +TY
Sbjct: 243 EDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTY---------- 292
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVN 120
N+ + NGY K G KAL + ++ S++ ++ V
Sbjct: 293 -----------------NILI---------NGYCKEGNEKKALEVFEEMSQKGVRATAVT 326
Query: 121 SAYNVILTLYGKYGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++ ++ + G+ + R++ + KK ++ Y +I+S D+E A +I E
Sbjct: 327 --YTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAE 384
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E + + D N L+ +C G L++A L++ +G + + S+ L +GY
Sbjct: 385 MEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGD 444
Query: 240 IHKAVEAMKKVL--AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
I A+ +++ TL+ + ++ L +GD AEN ++ + KG P
Sbjct: 445 IKDALRVRDEMMDKGFNPTLMTYNALIQGLCKI-----RQGD--DAENLMKEMVAKGITP 497
Query: 298 TD 299
D
Sbjct: 498 DD 499
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 97/220 (44%), Gaps = 3/220 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ G + YN ++ Y K GN +K + EM + G+ TY + + ++
Sbjct: 277 LEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSR 336
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D++ + + D V+Y + N + G +++A ++ + E++ + +
Sbjct: 337 KGQVQETDRLFN-VAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKK-RIPPDD 394
Query: 121 SAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++ + G+ D+ I E+ K+ ++ Y +IS D++ A ++ +E
Sbjct: 395 MTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDE 454
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ N LI C+ + AENL+ KG
Sbjct: 455 MMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKG 494
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G T YN ++ + + + L+ EM+E GI D TY T LS A D
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGD 438
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA- 122
+D++L M D + + T+ +GY KVG +D+AL +L+ +E G N+
Sbjct: 439 FAAVDELLGKM-IDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDES--GIHPNNVI 495
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVIS--SLLK-LDDLESAEKIFE 178
YN ++ K G D + ++ E+ +K+V NV + +LLK L D EK FE
Sbjct: 496 YNTLIDFLCKRGDVDLAIELFDEMKEKSVPA------NVTTFNALLKGLRDKNMPEKAFE 549
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 109/267 (40%), Gaps = 21/267 (7%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y++++ T N L HE G + D Y T +S A E + +
Sbjct: 318 AVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M+ + LD Y + G+ + L +A +L++ +E V + YN +L+ K
Sbjct: 378 SMK-EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCT-YNTLLSGSCK 435
Query: 133 YGKKDDVLRIWELYKKAV------KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
G D + EL K + V+ G ++ K+ ++ A +I + +
Sbjct: 436 AG---DFAAVDELLGKMIDDGCQPSVITFG--TLVHGYCKVGKIDEALRILRSMDESGIH 490
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
+ I N LID C+ G ++ A L + K K +V ++ L G R + KA E
Sbjct: 491 PNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFEL 550
Query: 247 M-----KKVLAAYQT---LVKWKPSVE 265
M ++ Y T L++W P +E
Sbjct: 551 MDQMREERCFPDYVTVDVLMEWLPVIE 577
>gi|338762831|gb|AEI98618.1| hypothetical protein 111O18.5 [Coffea canephora]
Length = 417
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 42/211 (19%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYA 59
+M DLG R+TV +N++L + NF + L E+ + G++ D+++Y + AY
Sbjct: 135 FNEMDDLGTPRSTVSFNALLSACNSSKNFGRAPELFDEVPQRYGLSPDKFSYGNLIKAYC 194
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ +G + AL LK+ EE KG ++
Sbjct: 195 E------------------------------------MGSPESALERLKEMEE--KGIEI 216
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ + I+ + K GK ++ R+W E+ K+ + + G NV + +D +S + +
Sbjct: 217 TAVTFTTIMHSFYKKGKNEEAERVWSEMVKRGCPI-DVGAYNVRIMHIHGEDPDSVKGLI 275
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
EE S L DT N+L+ YC++G++++A
Sbjct: 276 EEISSAGLKPDTISYNYLMTSYCKSGMMDEA 306
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 5/215 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q + + GL T V+YN+++ Y +TG E S +M+ I D TY ++
Sbjct: 363 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 422
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A +L M+ D V + T+ + YG+ G L+K +L SE Q G K N
Sbjct: 423 AERITNAQDLLMEMQ-DNGVNPTVETFNTLIDAYGRTGQLEKCFIVL--SEMQENGLKPN 479
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y I+ + K GK + + I +++ K V Y +I + ++ + A + E
Sbjct: 480 VVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE 539
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ +S + N LI C + +AE ++N
Sbjct: 540 KMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 574
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 126/302 (41%), Gaps = 14/302 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL + YN +L + G + +L+ EM + D +TY + D + +
Sbjct: 265 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 324
Query: 68 DKILTMMEADPNVALDWVIYATVGNGY---GKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ + D+ + + NG GKV + ++ L L + YN
Sbjct: 325 LSLFGKYLKNGVTIGDYTC-SILLNGLCKDGKVSIAEEVLQSLVNAGL----VPTRVIYN 379
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ Y + G+ + + ++ + +K + Y +I+ L K + + +A+ + E +
Sbjct: 380 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDN 439
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ N LID Y R G LEK +++ + G + +V S+ + + +N +I +A
Sbjct: 440 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 499
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDK 303
V + + ++ ++ P+ + A +D + + G A +E + G P+ +
Sbjct: 500 VAILDDMF--HKDVL---PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 554
Query: 304 LL 305
LL
Sbjct: 555 LL 556
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 6/202 (2%)
Query: 98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNG 156
G L +A+ ML++ +YNV++ + G+ D + ++ E+ ++AV +
Sbjct: 178 GDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHIT 237
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +I +K DLE+ ++ ++ L + N L+ CR G + + L++
Sbjct: 238 YNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMA 297
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
+ ++ L G +N + K L T+ + S+ C D
Sbjct: 298 SQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKD---- 353
Query: 277 EGDIGGAENFIELLNDKGFIPT 298
G + AE ++ L + G +PT
Sbjct: 354 -GKVSIAEEVLQSLVNAGLVPT 374
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 8/255 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM++ G+ + Y ++++ K F+ L ME+NG+T D Y A
Sbjct: 516 ITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCK 575
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E L V L V Y ++ +G+ K G D A +++K + G K +
Sbjct: 576 SGRAEEAYSFLV----RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNE--GCKAD 629
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y+V+L K K ++ L I ++ VK Y +IS ++K + A+ +F
Sbjct: 630 LYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFN 689
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S I YC+ G +E+AE+L+ + G V +++ G
Sbjct: 690 EMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMG 749
Query: 239 QIHKAVEAMKKVLAA 253
+ +A +K+++ A
Sbjct: 750 YMDRAFSTLKRMVDA 764
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 34/265 (12%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+Y ++K K G L+ EM G+ +TY + Y + + I +M
Sbjct: 286 MYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALM 345
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL----- 129
E + DW + + YG G L ++EE + GA ++T
Sbjct: 346 EQNGCNPDDWTYNSLI---YGLCG------GKLDEAEELLNGAIARGFTPTVITFTNLIN 396
Query: 130 -YGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
Y K + DD LR+ + K+ Y +I+ L+K L+ A++ E + L
Sbjct: 397 GYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAP 456
Query: 188 DTRIPNFLIDVYCRNGLLEKA---ENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHK 242
+ I +ID YC+ G++ A L+ HE H +W Y L G Q+ ++HK
Sbjct: 457 NVVIYTSIIDGYCKVGMVGAALEVFKLMEHEG-----CHPNAWTYGSLIYGLIQDKKLHK 511
Query: 243 AVEAMKKV--------LAAYQTLVK 259
A+ + K+ + AY TL++
Sbjct: 512 AMALITKMQEDGITPGVIAYTTLIQ 536
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 25/253 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ V Y ++ K G + SL +EM +G TY +S+Y
Sbjct: 653 LDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCK 712
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------- 113
E + ++ ME D V D V Y NG G +G +D+A + LK+ +
Sbjct: 713 IGQIEEAEHLIGEMERD-GVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCW 771
Query: 114 ---------IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNV 160
+K + +N+ Y ++ ++ +W+L ++ +K N Y ++
Sbjct: 772 TYWLLLKHFLKMSLINAHYIDTSGMWNWI----ELNTVWQLLERMMKHGLNPTVVTYSSI 827
Query: 161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220
I+ K LE A + + +A+ + I LI C L K + V G
Sbjct: 828 IAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGF 887
Query: 221 EIHVKSWYYLATG 233
+ ++S++YL G
Sbjct: 888 QPQLESYHYLIVG 900
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 5/249 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++ G+ + V Y+ ++ + K G+ E D E + T + Y + A+
Sbjct: 365 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 424
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + ++ ME + + IY T+ +GY V K L + K+ +E V
Sbjct: 425 TCNMERAEALVREMEEE-GIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVV 483
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y ++ LY K GK L + + K + VK Y +I+ +KL D +A +FE+
Sbjct: 484 T-YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFED 542
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLATGYRQNS 238
+ + D + N +I +C G +++A V +KL+ R +++ + GY ++
Sbjct: 543 MVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT-TRTFMPIIHGYAKSG 601
Query: 239 QIHKAVEAM 247
+ +++E
Sbjct: 602 DMRRSLEVF 610
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/338 (18%), Positives = 137/338 (40%), Gaps = 53/338 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ G T V Y ++ LY K G K + M+E G+ ++ TY ++ +
Sbjct: 470 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 529
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + M + + D ++Y + + + +G +D+A+ +K+ ++++
Sbjct: 530 LKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEM-QKLRHRPTT 587
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
+ I+ Y K G L ++++ ++ V + + +I+ L++ +E A +I +E
Sbjct: 588 RTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDE 647
Query: 180 W------------------------ESQALCYDTRIPNFLIDV-----------YCRNGL 204
+A Y TR+ N +DV C++G
Sbjct: 648 MTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGR 707
Query: 205 LEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKA---VEAMKKVLAAYQTLVK 259
++ A L +++ R I S+ Y L G+ + + +A ++ MKK
Sbjct: 708 MQSA--LAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV------- 758
Query: 260 WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KP + + + + GD+ A IE + G P
Sbjct: 759 -KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKP 795
>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
Length = 1005
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 153/346 (44%), Gaps = 12/346 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++LG V Y+ ++ L KTGN ++ L +M I YT + L+ Y
Sbjct: 301 EMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNG 360
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D+ + + ME + VA D VIY + YGK+GL + A K++ EQ+
Sbjct: 361 DYSRAVSLFSEMEKNKIVA-DEVIYGLLIRIYGKLGLYEDAEKTFKET-EQLGLLTNEKT 418
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y + ++ G + L I EL + + + Y ++ + +DL SAE F+
Sbjct: 419 YIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQALS 478
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
L D N ++++Y + LLEKA++ + + E ++ + Y + +
Sbjct: 479 KTGLP-DAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDPVEFDMELCKTVMKVYCKKGMLR 537
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDY-FKDEGDIGGAENFIELLNDKGFI--PT 298
A + ++++ L K +++L+ L K G + A + I +G I
Sbjct: 538 DAKQLIQEM--GTNGLFKDSEFIQTLSLILKMLLKTAGGLSVASHLISKFTREGDISKAQ 595
Query: 299 DLQDKLLDNVQNGK-SNLETLRELYG--NSLAGNEETLSGPEGDTS 341
+L D+L+ + + +++ +L LYG + L E S EG TS
Sbjct: 596 NLNDQLVKLGRGAEDASIASLITLYGKQHKLKKAIEVFSAIEGCTS 641
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 128/326 (39%), Gaps = 23/326 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G ++Y SM+ Y K G E+ L E+ GI + + A A+ H+
Sbjct: 638 GCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEA 697
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ ++ D + LD V Y T N G L A ++ + + + YN ++
Sbjct: 698 ENVIRRSFED-GLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQT-YNTMI 755
Query: 128 TLYGKYGKKDDVLRIWELYKKA------VKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
++YG+ G+K D + E++ KA V + Y N+IS K A +F E +
Sbjct: 756 SVYGR-GRKLD--KAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQ 812
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + N +I+VY GL +A+ L G S YLA R +Q
Sbjct: 813 EEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDG--CSPDSLTYLAL-IRAYTQSF 869
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP---- 297
K +EA + +++ V PS L F G AE L G P
Sbjct: 870 KFLEAEETIMSMQNEGV--LPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVAC 927
Query: 298 --TDLQDKL-LDNVQNGKSNLETLRE 320
T L+ L V+ G + E +RE
Sbjct: 928 YRTMLRGYLDYGCVEKGITFFEQIRE 953
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 120/296 (40%), Gaps = 18/296 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL TV YN+ + G +S+ M G+ TY T +S Y +
Sbjct: 708 GLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRK---L 764
Query: 68 DKILTMME----ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNSA 122
DK + M + V+LD Y + + YGK G +A + ++ EE IK KV +
Sbjct: 765 DKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKV--S 822
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+++ +Y G + +++ + + + Y +I + + AE+ +
Sbjct: 823 YNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQ 882
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
++ + N L+ + + G E+AE + + G V + + GY +
Sbjct: 883 NEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVE 942
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K + +++ + + P +++ + ++K G AE ++ + G IP
Sbjct: 943 KGITFFEQIRESVE------PDRFIMSSAVHFYKLAGKELEAEGILDSMKSLG-IP 991
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 106/272 (38%), Gaps = 31/272 (11%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
LGL Y +M +++ +GNFEK ++M M I + R++Y L Y D
Sbjct: 409 QLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLA 468
Query: 66 GIDKILTMME----ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN- 120
+ + D D + N Y K+ LL+KA K QI+ V
Sbjct: 469 SAEATFQALSKTGLPDAGSCNDML------NLYIKLDLLEKA----KDFIFQIRKDPVEF 518
Query: 121 --SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
++ +Y K G D ++ + ++ + +S +LK+ L++A +
Sbjct: 519 DMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQTLSLILKML-LKTAGGL-- 575
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + LI + R G + KA+NL + GR S L T Y +
Sbjct: 576 -----------SVASHLISKFTREGDISKAQNLNDQLVKLGRGAEDASIASLITLYGKQH 624
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270
++ KA+E + + + +++ A C
Sbjct: 625 KLKKAIEVFSAIEGCTSGKLIYISMIDAYAKC 656
Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 5/175 (2%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
+G++ Y +++ Y K G + L EM+E GI + +Y ++ YA A H
Sbjct: 779 VGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHE 838
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGK-VGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
++ M D + D + Y + Y + L+ ++ E + + V+ +N
Sbjct: 839 AQELFQAMLRD-GCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVH--FNQ 895
Query: 126 ILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+L+ + K G ++ R++ L + YR ++ L +E FE+
Sbjct: 896 LLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQ 950
>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
Length = 597
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 108/238 (45%), Gaps = 19/238 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ +G Y +++ + + G EK + + EM++ G D Y Y + AY+
Sbjct: 300 FREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSR 359
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A +G +I ++ME +P D Y + + +G+ GL +A A ++ ++Q
Sbjct: 360 AGLPQGASEIFSLMEHMGCEP----DRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRP 415
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWE----LYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ S + ++L+ + + G +V R E L+K ++ ++++ + L+
Sbjct: 416 TMKS-HMLLLSAHARSG---NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDM 471
Query: 174 EKIFEEWE----SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
E++F E + A DT N L++ Y R G L++ E +G V +W
Sbjct: 472 ERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTW 529
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/334 (19%), Positives = 131/334 (39%), Gaps = 49/334 (14%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y +L+ Y +G + + ++ EM+ NGI
Sbjct: 209 TYALLLRAYCGSGQLHRAEGVISEMQRNGI------------------------------ 238
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKY 133
P A +Y +G K +KA+ + ++ +++ + N+ Y +++ +YGK
Sbjct: 239 ---PPTA---TVYNAYLDGLLKARCSEKAVEVYQRMKKE--RCRTNTZTYXLMINVYGKA 290
Query: 134 GKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ LR++ E+ K Y ++++ + E AE++FEE + D
Sbjct: 291 NQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 350
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
N L++ Y R GL + A + + + G E S+ L + + +H+ E A
Sbjct: 351 NALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAF-GRAGLHQEAE------A 403
Query: 253 AYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQN 310
A+Q L + +P+++S L G++ E + L+ G P + N
Sbjct: 404 AFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYG 463
Query: 311 GKSNLETLRELYGNSLAGNEETLSGPEGDTSDLI 344
L+ + L+ G+ + P+ T +++
Sbjct: 464 RAGRLDDMERLFAAMERGDGASAGAPDTSTYNVL 497
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 9/216 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ G+ T VYN+ L K EK + M++ + TY ++ Y
Sbjct: 230 ISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGK 289
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A+ ++ M++ PN+ Y + N + + GL +KA + ++ ++
Sbjct: 290 ANQPMSSLRVFREMKSVGCKPNI----CTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 345
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL-ESAEKI 176
V AYN ++ Y + G I+ L + + N++ L + AE
Sbjct: 346 DVY-AYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAA 404
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
F+E + Q + + L+ + R+G + + E ++
Sbjct: 405 FQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVM 440
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 5/215 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q + + GL T V+YN+++ Y +TG E S +M+ I D TY ++
Sbjct: 226 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 285
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A +L M+ D V + T+ + YG+ G L+K +L SE Q G K N
Sbjct: 286 AERITNAQDLLMEMQ-DNGVNPTVETFNTLIDAYGRTGQLEKCFIVL--SEMQENGLKPN 342
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y I+ + K GK + + I +++ K V Y +I + ++ + A + E
Sbjct: 343 VVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE 402
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ +S + N LI C + +AE ++N
Sbjct: 403 KMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 437
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 126/302 (41%), Gaps = 14/302 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL + YN +L + G + +L+ EM + D +TY + D + +
Sbjct: 128 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 187
Query: 68 DKILTMMEADPNVALDWVIYATVGNGY---GKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ + D+ + + NG GKV + ++ L L + YN
Sbjct: 188 LSLFGKYLKNGVTIGDYTC-SILLNGLCKDGKVSIAEEVLQSLVNAGL----VPTRVIYN 242
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ Y + G+ + + ++ + +K + Y +I+ L K + + +A+ + E +
Sbjct: 243 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDN 302
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ N LID Y R G LEK +++ + G + +V S+ + + +N +I +A
Sbjct: 303 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 362
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDK 303
V + + ++ ++ P+ + A +D + + G A +E + G P+ +
Sbjct: 363 VAILDDMF--HKDVL---PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 417
Query: 304 LL 305
LL
Sbjct: 418 LL 419
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 6/202 (2%)
Query: 98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNG 156
G L +A+ ML++ +YNV++ + G+ D + ++ E+ ++AV +
Sbjct: 41 GDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHIT 100
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +I +K DLE+ ++ ++ L + N L+ CR G + + L++
Sbjct: 101 YNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMA 160
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
+ ++ L G +N + K L T+ + S+ C D
Sbjct: 161 SQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKD---- 216
Query: 277 EGDIGGAENFIELLNDKGFIPT 298
G + AE ++ L + G +PT
Sbjct: 217 -GKVSIAEEVLQSLVNAGLVPT 237
>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 450
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 140/339 (41%), Gaps = 18/339 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M + G+A YN M+ + G + L+ +M E I D T+ +SA
Sbjct: 103 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVK 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+K+ M + D V Y ++ G+ K D A M + +
Sbjct: 163 EGKLFEAEKLCDEM-LHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-----DLMASPDV 216
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N I+ +Y + + D+ +++ E+ ++ + Y +I ++D+L +A+ +F+E
Sbjct: 217 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 276
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S +C DT N L+ +C N LE+A L ++ ++ ++ + G + S+
Sbjct: 277 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 336
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A + L + +P V++ + F + I A + D G P +
Sbjct: 337 VDEAWD-----LFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 391
Query: 300 -----LQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
L L + KS +E + E+ N +G+ T+
Sbjct: 392 STYNTLIRGCLKAGEIDKS-IELISEMRSNGFSGDAFTI 429
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 107/253 (42%), Gaps = 7/253 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM GL V Y +++ K G+ + +L+ +MEE I D Y +
Sbjct: 33 VNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCK 92
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
H + + M + +A + Y + +G+ G A +L+ E+ V
Sbjct: 93 DGHHSDAQYLFSEM-LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVL 151
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ +N +++ K GK + ++ E+ + + Y ++I K + + A+ +F+
Sbjct: 152 T-FNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDL 210
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S D N +IDVYCR +++ L+ +G + ++ L G+ +
Sbjct: 211 MASP----DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 266
Query: 240 IHKAVEAMKKVLA 252
++ A + +++++
Sbjct: 267 LNAAQDLFQEMIS 279
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 135/333 (40%), Gaps = 46/333 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGN-------------------------------- 28
M++M G + YN+++ KTG
Sbjct: 310 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 369
Query: 29 FEKLD---SLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWV 85
E++D +L +M + + D T+ T + Y +A + +++L M A + + D
Sbjct: 370 LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVAS-DCSPDVY 428
Query: 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIW- 143
Y ++ +G+ KVG + +A +LK+ + +G + N Y ++ + + GK ++
Sbjct: 429 TYTSLVDGFCKVGRMVEARRVLKRMAK--RGCQPNVVTYTALIDAFCRAGKPTVAYKLLE 486
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YDTRIPNFLIDVYCRN 202
E+ V+ YR++I DLE A K+ E E C D ++D CR
Sbjct: 487 EMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRT 546
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
G + A L+ K G + L G Q ++ KA+E ++++ + K +P
Sbjct: 547 GRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSR----KSRP 602
Query: 263 SVESLAACLDYFKDEGDIGGAENFI-ELLNDKG 294
+ E+ A + EG A ELL +KG
Sbjct: 603 NAEAYEAVIQELAREGRHEEANALADELLGNKG 635
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 129/297 (43%), Gaps = 10/297 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+ G YN ++ + K + L+ EM+E+G+ + TY T + + +
Sbjct: 32 KMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQT 91
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ K+ M + + V Y T+ +G + GL+D+A +L + E +G + +
Sbjct: 92 KVDTAYKLFRQM-VENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRE--RGLQPDKF 148
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+Y+ ++ K GK D L+++E Y +I+ L K L+ A K+FE+
Sbjct: 149 SYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKM 208
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ D L+D C+ L++A+ ++ + + +V ++ L G + Q+
Sbjct: 209 RENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQV 268
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A E K+++ +P+V + + + F + A +E + G +P
Sbjct: 269 RDAQEVFKRMIVR-----GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLP 320
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 117/253 (46%), Gaps = 3/253 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M++ GLA V Y++++ + + + L +M ENG + TY T LS
Sbjct: 65 LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCR 124
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L M + + D Y T+ G K G +D AL + + + V
Sbjct: 125 NGLMDEAYELLDEMR-ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV- 182
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AY+ ++ K G+ D+ +++E + + + + + ++ L K D L+ A+++ E
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 242
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E + + + LID C+ G + A+ + ++G E +V ++ L G+ +
Sbjct: 243 MEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG 302
Query: 240 IHKAVEAMKKVLA 252
+ A+ M+++ A
Sbjct: 303 VDSALLLMEEMTA 315
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 137/325 (42%), Gaps = 16/325 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTR---LSAY 58
+KMR+ V + +++ K ++ ++ ME+ T + TY + L
Sbjct: 206 EKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 265
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + + K + + +PNV V Y ++ +G+ +D AL +++ E G
Sbjct: 266 GQVRDAQEVFKRMIVRGIEPNV----VTYNSLIHGFCMTNGVDSALLLME--EMTATGCL 319
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ YN ++ K G+ + R++ ++ K Y +I KL+ ++ A +
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F++ QA+ D + L++ YC GL++ AE L+ V ++ L G+ +
Sbjct: 380 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 439
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ +A +K++ +P+V + A +D F G A +E + G
Sbjct: 440 VGRMVEARRVLKRMAKR-----GCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQ 494
Query: 297 PTDLQDKLLDNVQNGKSNLETLREL 321
P + + L G +LE R++
Sbjct: 495 PNVITYRSLIGGFCGTGDLEEARKM 519
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 102/261 (39%), Gaps = 48/261 (18%)
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGK 132
ME + NV + W I +G K L +A K ++ KG N YNV++ + K
Sbjct: 1 MECEKNV-ITWTIMI---DGLCKANRLPEATTYFAKMKK--KGTVPNEWTYNVLINGFCK 54
Query: 133 YGKKDDVLRIWELYKK------AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
K V R + L K+ A V+ Y VI + +++A K+F +
Sbjct: 55 VHK---VHRAYLLLKEMKESGLAPNVVT--YSTVIHGFCRQTKVDTAYKLFRQMVENGCM 109
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
+ N L+ CRNGL+++A L++ + +G + S+ L G + +I A++
Sbjct: 110 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 169
Query: 247 MK--------KVLAAYQTLV----------------------KWKPSVESLAACLDYFKD 276
+ + AY TL+ +P V + A +D
Sbjct: 170 FEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 229
Query: 277 EGDIGGAENFIELLNDKGFIP 297
+ A+ +E + D+ P
Sbjct: 230 GDRLQEAQQVLETMEDRNCTP 250
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 137/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT Y+++ K+ + G F ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D + Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVITYNTMINGYCRVKKMEEA----EKYFVEMKGKNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + + D I LI +C+ G L+ A +++ + L Y
Sbjct: 278 LKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q +AV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPS--AYNPIVEYLCNNGQTSKAEALVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 MKLGVQDPTALNTLIRGHSQEGSPD 420
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 104/225 (46%), Gaps = 9/225 (4%)
Query: 78 PNVALDWV--IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
P L+W ++ + + YGK G++ +++ + +K EE + + +Y+ + + + G+
Sbjct: 72 PKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEE-LGVERTIKSYDALFKVIMRRGR 130
Query: 136 KDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
R + ++ + ++ + + +I +E+A + FE+ +S+ + D N
Sbjct: 131 FMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNT 190
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
+I+ YCR +E+AE K K E V ++ L GY Q+ A+ +++ + Y
Sbjct: 191 MINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGY 249
Query: 255 QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KP+ + + L + + A + ++ + DK PTD
Sbjct: 250 GI----KPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTD 290
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 105/267 (39%), Gaps = 40/267 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ + T V Y +++K Y + L+ EM+ GI + TY T L +A
Sbjct: 210 EMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAE 269
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
IL M D I+ + + + KVG LD A +LK I+ + A
Sbjct: 270 KMSEARSILKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAAADVLKA---MIRLSVPTEA 326
Query: 123 --YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y V++ Y K G+ Y +AVK+L+ L++ D + +
Sbjct: 327 GHYGVLIENYCKAGQ----------YDQAVKLLDK--------LIEKDIIVRPQ------ 362
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L + N +++ C NG KAE LV G + + L G+ Q
Sbjct: 363 --STLHMEPSAYNPIVEYLCNNGQTSKAEALVRQLMKLGVQ-DPTALNTLIRGHSQEGSP 419
Query: 241 HKAVEAMKKVL--------AAYQTLVK 259
A E +K +L +AY +LV+
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYDSLVQ 446
>gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa]
gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 131/326 (40%), Gaps = 24/326 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY------CTR 54
+Q + +GL +Y +++ K+G + + + HEM G+ + +TY C R
Sbjct: 65 LQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALIDGCAR 124
Query: 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
A A GI + NV D V++ + G+ G +D+A +L +E
Sbjct: 125 AGQVAKAFGAYGIMR-------SKNVKPDRVVFNALITACGQSGAVDRAFDVL--AEMTG 175
Query: 115 KGAKVNSAYNVILTLYGKYGKKDDVLRIWELY----KKAVKVLNNGYRNVISSLLKLDDL 170
+ ++ + + L V R E+Y K +K Y I+S ++ D
Sbjct: 176 EAQPIDPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDW 235
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
E A K+F++ + + D + LIDV G ++ A ++ K KG ++ + + L
Sbjct: 236 EFACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSL 295
Query: 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
K +E + + + +K KP+V ++ A + D + A + +
Sbjct: 296 MGACCNAKNWQKGLELYEDIKS-----MKIKPTVATMNALITALCDGDQLPKALEVLSEM 350
Query: 291 NDKGFIPTDLQDKLLDNVQNGKSNLE 316
G P + +L K +LE
Sbjct: 351 KAWGLRPNTITYSILSVASERKDDLE 376
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 5/249 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++ G+ + V Y+ ++ + K G+ E D E + T + Y + A+
Sbjct: 367 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + ++ ME + + IY T+ +GY V K L + K+ +E V
Sbjct: 427 TCNMERAEALVREMEEE-GIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVV 485
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y ++ LY K GK L + + K + VK Y +I+ +KL D +A +FE+
Sbjct: 486 T-YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFED 544
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLATGYRQNS 238
+ + D + N +I +C G +++A V +KL+ R +++ + GY ++
Sbjct: 545 MVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT-TRTFMPIIHGYAKSG 603
Query: 239 QIHKAVEAM 247
+ +++E
Sbjct: 604 DMRRSLEVF 612
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/338 (18%), Positives = 137/338 (40%), Gaps = 53/338 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ G T V Y ++ LY K G K + M+E G+ ++ TY ++ +
Sbjct: 472 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 531
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + M + + D ++Y + + + +G +D+A+ +K+ ++++
Sbjct: 532 LKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEM-QKLRHRPTT 589
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
+ I+ Y K G L ++++ ++ V + + +I+ L++ +E A +I +E
Sbjct: 590 RTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDE 649
Query: 180 W------------------------ESQALCYDTRIPNFLIDV-----------YCRNGL 204
+A Y TR+ N +DV C++G
Sbjct: 650 MTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGR 709
Query: 205 LEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKA---VEAMKKVLAAYQTLVK 259
++ A L +++ R I S+ Y L G+ + + +A ++ MKK
Sbjct: 710 MQSA--LAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV------- 760
Query: 260 WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KP + + + + GD+ A IE + G P
Sbjct: 761 -KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKP 797
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 5/252 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M ++G T + N+++ G L+ M E G + TY L
Sbjct: 165 VDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCK 224
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L ME + + LD V Y+ + +G K G LD A + +E +IKG K +
Sbjct: 225 SGQTALAMELLRKME-ERKIKLDAVKYSIIIDGLCKDGSLDNAFNLF--NEMEIKGFKAD 281
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y ++ + G+ DD ++ ++ K+ + + +I +K L AE++ +
Sbjct: 282 IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + DT LID +C+ L+KA ++++ KG +++++ L GY + +
Sbjct: 342 EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKAN 401
Query: 239 QIHKAVEAMKKV 250
I +E +K+
Sbjct: 402 LIDDGLELFRKM 413
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 27/312 (8%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY------CTRLSAYADASDHEGIDK 69
++ + + +T ++ + L +ME GI ++ YT C R + A G K
Sbjct: 75 FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMG--K 132
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI--L 127
I+ + +P D V ++T+ NG G + +AL ++ + E + + ++ L
Sbjct: 133 IIK-LGYEP----DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGL 187
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
L GK D VL I + + + Y V+ + K A ++ + E + +
Sbjct: 188 CLNGKVS--DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKL 245
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D + +ID C++G L+ A NL N ++KG + + + L G+ + + +
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLL 305
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP-----TDLQD 302
+ ++ K P V + +A +D F EG + AE + + +G P T L D
Sbjct: 306 RDMIKR-----KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID 360
Query: 303 KLLDNVQNGKSN 314
Q K+N
Sbjct: 361 GFCKENQLDKAN 372
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 19/245 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G ++Y ++++ + G ++ L+ +M + IT D + SA D EG
Sbjct: 277 GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF----SALIDCFVKEG- 331
Query: 68 DKILTMMEADP--------NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ EA+ ++ D V Y ++ +G+ K LDKA ML + G +
Sbjct: 332 ----KLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ +N+++ Y K DD L ++ ++ + V Y +I +L LE A+++F+
Sbjct: 388 RT-FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S+ + D L+D C NG EKA + + E+ + + + G S
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506
Query: 239 QIHKA 243
++ A
Sbjct: 507 KVDDA 511
>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 484
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 137/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RTT Y+++ K+ + G F ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTTKSYDTLFKVILRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D + Y T+ NGY +V +D+A +K ++KG +
Sbjct: 163 SGKVETANRFFDDMKSR-EISPDVITYNTMINGYYRVKKMDEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A +
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSV 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + + D I LI C+ G L+ A +++ + L +
Sbjct: 278 LKEMVDKYIAPTDNSIFMRLISGQCKTGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KADQHDKAVKLLDKLIEKDIILRPQSTLHMEPS--AYNPMIEYLCNNGQTAKAEALVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 LKLGVQDPTALNTLVRGHSQEGSPD 420
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/225 (19%), Positives = 103/225 (45%), Gaps = 9/225 (4%)
Query: 78 PNVALDWV--IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
P L+W ++ + + YGK G++ +++ + +K EE + + +Y+ + + + G+
Sbjct: 72 PKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEE-LGVERTTKSYDTLFKVILRRGR 130
Query: 136 KDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
R + ++ + ++ + + +I +E+A + F++ +S+ + D N
Sbjct: 131 FMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFDDMKSREISPDVITYNT 190
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
+I+ Y R +++AE K + E V ++ L GY Q+ A+ +++ + Y
Sbjct: 191 MINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGY 249
Query: 255 QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KP+ + + L + + A + ++ + DK PTD
Sbjct: 250 GI----KPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYIAPTD 290
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 101/267 (37%), Gaps = 40/267 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ + T V Y +++K Y + L+ EM+ GI + TY T L +A
Sbjct: 210 EMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAE 269
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+L M D I+ + +G K G LD A +LK I+ + A
Sbjct: 270 KMSEARSVLKEMVDKYIAPTDNSIFMRLISGQCKTGNLDAAADVLKA---MIRLSVPTEA 326
Query: 123 --YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y V++ + K + D KAVK+ LD L + I
Sbjct: 327 GHYGVLIENFCKADQHD----------KAVKL--------------LDKLIEKDIILR-- 360
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L + N +I+ C NG KAE LV + LK + L G+ Q
Sbjct: 361 PQSTLHMEPSAYNPMIEYLCNNGQTAKAEALV-RQLLKLGVQDPTALNTLVRGHSQEGSP 419
Query: 241 HKAVEAMKKVL--------AAYQTLVK 259
A E +K +L +AY +LV+
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYDSLVQ 446
>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 484
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAVDVLKAMIRLSVPTEAGHYGLLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQASKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 MKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 5/215 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q + + GL T V+YN+++ Y +TG E S +M+ I D TY ++
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 418
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A +L M+ D V + T+ + YG+ G L+K +L SE Q G K N
Sbjct: 419 AERITNAQDLLMEMQ-DNGVNPTVETFNTLIDAYGRTGQLEKCFIVL--SEMQENGLKPN 475
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y I+ + K GK + + I +++ K V Y +I + ++ + A + E
Sbjct: 476 VVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE 535
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ +S + N LI C + +AE ++N
Sbjct: 536 KMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 570
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/327 (20%), Positives = 134/327 (40%), Gaps = 41/327 (12%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YN+M+ + K G+ E SL +M +G+ + TY LS A +L
Sbjct: 232 ITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDE 291
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS----------------------- 110
M + V D Y+ + +G + G L++ KS
Sbjct: 292 MASQKMVP-DGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDG 350
Query: 111 ----EEQIKGAKVNSA-------YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYR 158
E++ + VN+ YN ++ Y + G+ + + ++ + +K + Y
Sbjct: 351 KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYN 410
Query: 159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218
+I+ L K + + +A+ + E + + N LID Y R G LEK +++ +
Sbjct: 411 ALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN 470
Query: 219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG 278
G + +V S+ + + +N +I +AV + + ++ ++ P+ + A +D + + G
Sbjct: 471 GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMF--HKDVL---PNAQVYNAIIDAYVEHG 525
Query: 279 DIGGAENFIELLNDKGFIPTDLQDKLL 305
A +E + G P+ + LL
Sbjct: 526 PNDQAFILVEKMKSNGISPSIVTYNLL 552
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 116/302 (38%), Gaps = 24/302 (7%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
RD YN ++ ++ G + EM E + + TY T + + D
Sbjct: 188 RDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDL 247
Query: 65 EGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
E + M PN + Y + +G + G + + A+L + Q K
Sbjct: 248 EAGFSLRDQMVCHGLKPNA----ITYNVLLSGLCRAGRMGETSALLDEMASQ-KMVPDGF 302
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y+++ + G +L ++ + K V + + +++ L K + AE++ +
Sbjct: 303 TYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 362
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L I N LI+ YC+ G LE A ++K R I Y N+ I
Sbjct: 363 VNAGLVPTRVIYNTLINGYCQTGELEGA--FSTFGQMKSRHIKPDHITY-------NALI 413
Query: 241 HKAVEAMKKVLAAYQTLVKWK-----PSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ +A +++ A L++ + P+VE+ +D + G + + + + G
Sbjct: 414 NGLCKA-ERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 472
Query: 296 IP 297
P
Sbjct: 473 KP 474
>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Brachypodium distachyon]
Length = 556
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 124/320 (38%), Gaps = 66/320 (20%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ YNS+L Y + N + + L+ EME G+ TY + + A D +
Sbjct: 178 GVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKV 237
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ + M+ NVA D Y+ V N Y +G V A V
Sbjct: 238 EAVYDEMKRK-NVAGDVYFYSAVINAY-------------------CRGGNVRRASEVF- 276
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
E V+ Y +I+ K+ +E+AE + + + + + +
Sbjct: 277 ---------------DECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGH 321
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA---- 243
+ + N +ID YCR+G++EKA + + G E+ + ++ LA G + +++ A
Sbjct: 322 NQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLL 381
Query: 244 -VEAMKKVLA---AYQTLVKW----------------------KPSVESLAACLDYFKDE 277
+ A K V +Y TL+ +PSV + +D +
Sbjct: 382 HIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKN 441
Query: 278 GDIGGAENFIELLNDKGFIP 297
G I AE F + + KG +P
Sbjct: 442 GSIREAERFKKEMEKKGLVP 461
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 110/243 (45%), Gaps = 5/243 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y +++ + K G E + L+ +M+ G+ +++ + T + Y E +I +ME
Sbjct: 291 YGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVME 350
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYG 134
+ LD Y T+ G +V ++ A +L E KG N +Y +++++ K G
Sbjct: 351 -KMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAE--KGVAPNYVSYTTLISIHAKEG 407
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ R++ ++ K + Y +I +K + AE+ +E E + L D
Sbjct: 408 DMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYA 467
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
L+ +C NG ++ A L K +G + +V ++ L +G + + +A + +LAA
Sbjct: 468 GLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAA 527
Query: 254 YQT 256
T
Sbjct: 528 GLT 530
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 116/256 (45%), Gaps = 16/256 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ T Y ++ + G+ K++++ EM+ + D Y Y ++AY
Sbjct: 206 LKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCR 265
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++ V + Y + NG+ K+G ++ A +L ++ Q++G N
Sbjct: 266 GGNVRRASEVFDECVGH-GVEPNERTYGALINGFCKIGQIEAAEMLL--ADMQLRGVGHN 322
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+N ++ Y ++G + L I + +K +++ Y + L +++ +E A+K+
Sbjct: 323 QIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLH 382
Query: 179 EWESQALCYDTRIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ + PN+ LI ++ + G + +A L + KG V ++ + G
Sbjct: 383 IMAEKGVA-----PNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDG 437
Query: 234 YRQNSQIHKAVEAMKK 249
Y +N I +A E KK
Sbjct: 438 YIKNGSIREA-ERFKK 452
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 5/215 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q + + GL T V+YN+++ Y +TG E S +M+ I D TY ++
Sbjct: 178 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 237
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A +L M+ D V + T+ + YG+ G L+K +L SE Q G K N
Sbjct: 238 AERITNAQDLLMEMQ-DNGVNPTVETFNTLIDAYGRTGQLEKCFIVL--SEMQENGLKPN 294
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y I+ + K GK + + I +++ K V Y +I + ++ + A + E
Sbjct: 295 VVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE 354
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ +S + N LI C + +AE ++N
Sbjct: 355 KMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 389
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 122/302 (40%), Gaps = 14/302 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL + YN +L + G + +L+ EM + D +TY + D + +
Sbjct: 80 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 139
Query: 68 DKILTMMEADPNVALDWVIYATVGNGY---GKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ + D+ + + NG GKV + ++ L L + YN
Sbjct: 140 LSLFGKYLKNGVTIGDYTC-SILLNGLCKDGKVSIAEEVLQSLVNAGL----VPTRVIYN 194
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ Y + G+ + + ++ + +K + Y +I+ L K + + +A+ + E +
Sbjct: 195 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDN 254
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ N LID Y R G LEK +++ + G + +V S+ + + +N +I +A
Sbjct: 255 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 314
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDK 303
V + + P+ + A +D + + G A +E + G P+ +
Sbjct: 315 VAILDDMFHK-----DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 369
Query: 304 LL 305
LL
Sbjct: 370 LL 371
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 6/178 (3%)
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+YNV++ + G+ D + ++ E+ ++AV + Y +I +K DLE+ ++ ++
Sbjct: 17 SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 76
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L + N L+ CR G + + L++ + ++ L G +N
Sbjct: 77 VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 136
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ K L T+ + S+ C D G + AE ++ L + G +PT
Sbjct: 137 KAMLSLFGKYLKNGVTIGDYTCSILLNGLCKD-----GKVSIAEEVLQSLVNAGLVPT 189
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 5/249 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++ G+ + V Y+ ++ + K G+ E D E + T + Y + A+
Sbjct: 367 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + ++ ME + + IY T+ +GY V K L + K+ +E V
Sbjct: 427 TCNMERAEALVREMEEE-GIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVV 485
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y ++ LY K GK L + + K + VK Y +I+ +KL D +A +FE+
Sbjct: 486 T-YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFED 544
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLATGYRQNS 238
+ + D + N +I +C G +++A V +KL+ R +++ + GY ++
Sbjct: 545 MVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT-TRTFMPIIHGYAKSG 603
Query: 239 QIHKAVEAM 247
+ +++E
Sbjct: 604 DMRRSLEVF 612
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/335 (19%), Positives = 140/335 (41%), Gaps = 50/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ G T V Y ++ LY K G K + M+E G+ ++ TY ++ +
Sbjct: 472 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 531
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + M + + D ++Y + + + +G +D+A+ +K+ ++++
Sbjct: 532 LKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEM-QKLRHRPTT 589
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLK-------LDDLES 172
+ I+ Y K G L ++++ ++ V + + +I+ L++ LD++
Sbjct: 590 RTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDEMTL 649
Query: 173 A---------EKIFEEWES-----QALCYDTRIPNFLIDV-----------YCRNGLLEK 207
A KI + + S +A Y TR+ N +DV C++G ++
Sbjct: 650 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 709
Query: 208 AENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKA---VEAMKKVLAAYQTLVKWKP 262
A L +++ R I S+ Y L G+ + + +A ++ MKK KP
Sbjct: 710 A--LAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------KP 759
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + + + GD+ A IE + G P
Sbjct: 760 DIHTYTSFISACSKAGDMNRATQTIEEMEALGVKP 794
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 5/249 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++ G+ + V Y+ ++ + K G+ E D E + T + Y + A+
Sbjct: 367 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + ++ ME + + IY T+ +GY V K L + K+ +E V
Sbjct: 427 TCNMERAEALVREMEEE-GIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVV 485
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y ++ LY K GK L + + K + VK Y +I+ +KL D +A +FE+
Sbjct: 486 T-YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFED 544
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLATGYRQNS 238
+ + D + N +I +C G +++A V +KL+ R +++ + GY ++
Sbjct: 545 MVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT-TRTFMPIIHGYAKSG 603
Query: 239 QIHKAVEAM 247
+ +++E
Sbjct: 604 DMRRSLEVF 612
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/335 (19%), Positives = 140/335 (41%), Gaps = 50/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ G T V Y ++ LY K G K + M+E G+ ++ TY ++ +
Sbjct: 472 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 531
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + M + + D ++Y + + + +G +D+A+ +K+ ++++
Sbjct: 532 LKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEM-QKLRHRPTT 589
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLK-------LDDLES 172
+ I+ Y K G L ++++ ++ V + + +I+ L++ LD++
Sbjct: 590 RTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDEMTL 649
Query: 173 A---------EKIFEEWES-----QALCYDTRIPNFLIDV-----------YCRNGLLEK 207
A KI + + S +A Y TR+ N +DV C++G ++
Sbjct: 650 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 709
Query: 208 AENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKA---VEAMKKVLAAYQTLVKWKP 262
A L +++ R I S+ Y L G+ + + +A ++ MKK KP
Sbjct: 710 A--LAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------KP 759
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + + + GD+ A IE + G P
Sbjct: 760 DIHTYTSFISACSKAGDMNRATQTIEEMEALGVKP 794
>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 484
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 138/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIEKFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +P+ + ++Y + G AE + L
Sbjct: 338 KAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPN--AYNPMIEYLCNNGQASKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 MKLGVQDPTALNTLIRGHSQEGSPD 420
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 40/267 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ + T V Y +++K Y + L+ EM+ +GI + TY T L +A
Sbjct: 210 EMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGLCNAE 269
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
IL M D I+ + + + K G LD A +LK I+ + A
Sbjct: 270 KMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKA---MIRLSVPTEA 326
Query: 123 --YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y +++ + K G+ Y KAVK+ LD L + I
Sbjct: 327 GHYGLLIEKFCKAGQ----------YDKAVKL--------------LDKLIEKDIILR-- 360
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L + N +I+ C NG KAE LV G + + L G+ Q
Sbjct: 361 PQSTLHLEPNAYNPMIEYLCNNGQASKAETLVRQLMKLGVQ-DPTALNTLIRGHSQEGSP 419
Query: 241 HKAVEAMKKVL--------AAYQTLVK 259
A E +K +L +AY +LV+
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYNSLVQ 446
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/406 (19%), Positives = 162/406 (39%), Gaps = 75/406 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT---RLSA 57
M +M + G+ VVY+S+L+ Y K+G +E + + EM E GI D Y L
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232
Query: 58 YADASDHEGIDKILTMMEADPNV-------------------------------ALDWVI 86
A G+ ++ +PNV A D V
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVT 292
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA----YNVILTLYGKYGKKDDVLRI 142
Y T+ G V +D+A+ +L EE ++G + +N ++ G+ ++
Sbjct: 293 YNTLIKGLSDVLEMDEAMWLL---EEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV 349
Query: 143 WELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
+ ++ ++N Y +I LL++ + A ++ +E S L D+ + LI +C+
Sbjct: 350 RAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCK 409
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV-------LAAY 254
+++AE+L++ + +G E + + L + + +A ++ + AY
Sbjct: 410 MWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAY 469
Query: 255 QTLVK----------------------WKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
T++ P + + ++ F GD+ A ++ +
Sbjct: 470 STMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTA 529
Query: 293 KGFIP-TDLQDKLLDNVQN-GKSN--LETLRELYGNSLAGNEETLS 334
GF+P + D L+ G+ N LE +RE+ ++A + + +S
Sbjct: 530 SGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIIS 575
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 127/301 (42%), Gaps = 12/301 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ MR G+ V Y ++++ +K LM EM E+GI + Y + L Y
Sbjct: 138 LRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCK 197
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + K+ M ++ + D V+Y + + KVG KA ++ +G + N
Sbjct: 198 SGRWEDVGKVFVEM-SEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVR--RGLEPN 254
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ K G + + + ++ +K V Y +I L + +++ A + E
Sbjct: 255 VVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLE 314
Query: 179 EWESQALCYDTRIPNF--LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E + F +I C G + +A + + G +++ ++ L G +
Sbjct: 315 EMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLR 374
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ KA+E M ++ T + +P + + + F + AE+ + + D+G
Sbjct: 375 VHKVRKAMELMDEM-----TSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIE 429
Query: 297 P 297
P
Sbjct: 430 P 430
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 127/301 (42%), Gaps = 8/301 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G++ T V + ++ Y K N + EM++ GI TY + +S
Sbjct: 252 LKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 311
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E K++ ME D ++ + + + V G+ K G++ A + E+ V
Sbjct: 312 EGKVEEGVKLMEEME-DLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDV- 369
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ Y + GK +D + + E + KK + Y +I+ + D SA + +E
Sbjct: 370 VIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDE 429
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + D N LI C G + KA L++ G E + ++ + G+
Sbjct: 430 MKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGN 489
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I A E ++ + + +V + + YF G + A + + + DK +P
Sbjct: 490 IKSAYEIRTRM-----EKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544
Query: 300 L 300
+
Sbjct: 545 I 545
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 119/261 (45%), Gaps = 15/261 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYA 59
+++M + G + TV +N ++ +T + ++ ++ +G+ T+ + +S Y
Sbjct: 274 VERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYC 333
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A E + M A + + V Y + NGYGKVG L A+ + ++ +++
Sbjct: 334 KAGKLEDAMAVYNDMVAS-GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ-MTRLRCPPD 391
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
++ ++ Y + G+ DD LRIW ++ + ++ + +I SL K + + A +
Sbjct: 392 VVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLN 451
Query: 179 EW------ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
E QA Y N +IDV C+ G +++A + + KG ++ L
Sbjct: 452 ELNLRPDIAPQAFIY-----NPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILII 506
Query: 233 GYRQNSQIHKAVEAMKKVLAA 253
GY S+I +A+ +++ A
Sbjct: 507 GYCMKSRISEAIMFFHEMVEA 527
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 5/252 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M ++G T + N+++ G L+ M E G + TY L
Sbjct: 165 VDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCK 224
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L ME + + LD V Y+ + +G K G LD A + +E +IKG K +
Sbjct: 225 SGQTALAMELLRKME-ERKIKLDAVKYSIIIDGLCKDGSLDNAFNLF--NEMEIKGFKAD 281
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y ++ + G+ DD ++ ++ K+ + + +I +K L AE++ +
Sbjct: 282 IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + DT LID +C+ L+KA ++++ KG +++++ L GY + +
Sbjct: 342 EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKAN 401
Query: 239 QIHKAVEAMKKV 250
I +E +K+
Sbjct: 402 LIDDGLELFRKM 413
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 27/312 (8%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY------CTRLSAYADASDHEGIDK 69
++ + + +T ++ + L +ME GI ++ YT C R + A G K
Sbjct: 75 FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMG--K 132
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI--L 127
I+ + +P D V ++T+ NG G + +AL ++ + E + + ++ L
Sbjct: 133 IIK-LGYEP----DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGL 187
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
L GK D VL I + + + Y V+ + K A ++ + E + +
Sbjct: 188 CLNGKVS--DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKL 245
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D + +ID C++G L+ A NL N ++KG + + + L G+ + + +
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLL 305
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP-----TDLQD 302
+ ++ K P V + +A +D F EG + AE + + +G P T L D
Sbjct: 306 RDMIKR-----KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID 360
Query: 303 KLLDNVQNGKSN 314
Q K+N
Sbjct: 361 GFCKENQLDKAN 372
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 19/245 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G ++Y ++++ + G ++ L+ +M + IT D + SA D EG
Sbjct: 277 GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF----SALIDCFVKEG- 331
Query: 68 DKILTMMEADP--------NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ EA+ ++ D V Y ++ +G+ K LDKA ML + G +
Sbjct: 332 ----KLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ +N+++ Y K DD L ++ ++ + V Y +I +L LE A+++F+
Sbjct: 388 RT-FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S+ + D L+D C NG EKA + + E+ + + + G S
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506
Query: 239 QIHKA 243
++ A
Sbjct: 507 KVDDA 511
>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 905
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 12/282 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFE-KLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR + R Y +++ + K GN LD+ H M ++G + TY T + Y
Sbjct: 234 KEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNH-MRQDGACPNVVTYNTLIDVYGK 292
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E K+LT+M+ + V Y T+ G +A+A+ K+ ++ G N
Sbjct: 293 MGLWEQGIKVLTLMKTE-GVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDE--GYSPN 349
Query: 121 -SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN +++ YGK G+ D V+ ++ E+ K + Y ++IS+ K E A ++F
Sbjct: 350 ATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFN 409
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +T N LI + EKA + + G V ++ L + Y +
Sbjct: 410 EMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGG 469
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI 280
Q +A+ A +++ L + KP A +D + G I
Sbjct: 470 QWRRALGAYEQM-----RLQRCKPDAIVFNAIIDTLWETGVI 506
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 128/290 (44%), Gaps = 6/290 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ K+ + G+ + + YN ++ Y + G+ +K +MEE G+ +R T+ T +S + +
Sbjct: 348 LAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCE 407
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + + + M + V+ Y ++ NGYG+ G + L + ++ V
Sbjct: 408 TGEVDHAETWVRRM-VEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVI 466
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S ++I L D + + ++ + V Y +I + L L+ A + F+E
Sbjct: 467 SYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEM 526
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ N LI+ RNG ++KAE+L KG V ++ L +GY ++
Sbjct: 527 IQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNT 586
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
K +E K+ ++ KP+V + + + EG + + F E+L
Sbjct: 587 QKCLELYDKM-----KILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEML 631
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 15/294 (5%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D G V Y ++ + +K LM M ++G+ + Y L +
Sbjct: 150 DSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIK 209
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYN 124
K+ M N+ + V Y T+ +GY KVG +++AL ++ +EQ + N YN
Sbjct: 210 DARKLFDEM-IQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQ--NVECNLVTYN 266
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
+L G+ DD + L + L G+ + + DD + ++ +
Sbjct: 267 SLLNGLCGSGRVDDAREVL-LEMEGSGFLPGGFLSFV-----FDDHSNGAGDDGLFDGKE 320
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ D R L++ CR G +EKAE ++ G S+ L Y Q + KA+
Sbjct: 321 IRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAI 380
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+++ +P+ + + F + G++ AE ++ + +KG PT
Sbjct: 381 LTTEQMEER-----GLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPT 429
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 119/292 (40%), Gaps = 19/292 (6%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
+ TV YN+++ Y K G E+ M+E + + TY + L+ + +
Sbjct: 223 MVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAR 282
Query: 69 KILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
++L ME P L +V + NG G GL D + +E+ +N V
Sbjct: 283 EVLLEMEGSGFLPGGFLSFV-FDDHSNGAGDDGLFDGKEI---RIDERTYCILLNGLCRV 338
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
G+ K ++VL +L + V Y ++++ + D++ A E+ E + L
Sbjct: 339 -----GRIEKAEEVL--AKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGL 391
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ N +I +C G ++ AE V KG V+++ L GY Q + E
Sbjct: 392 EPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFE 451
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ ++ A KP+V S + ++ + + AE + + +G P
Sbjct: 452 FLDEMDKA-----GIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSP 498
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/301 (18%), Positives = 125/301 (41%), Gaps = 21/301 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+ M G+ + YN +L K + L EM + + + TY T + Y
Sbjct: 180 MKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCK 239
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ--IKG 116
GI++ L E + NV + V Y ++ NG G +D A +L + E + G
Sbjct: 240 VG---GIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPG 296
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++ ++ G DD L K +++ Y +++ L ++ +E AE++
Sbjct: 297 GFLSFVFD-----DHSNGAGDDGL----FDGKEIRIDERTYCILLNGLCRVGRIEKAEEV 347
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ + N L++ YC+ G ++KA + +G E + ++ + + + +
Sbjct: 348 LAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCE 407
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ A +++++ P+VE+ + ++ + +G F++ ++ G
Sbjct: 408 TGEVDHAETWVRRMVEK-----GVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIK 462
Query: 297 P 297
P
Sbjct: 463 P 463
>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 481
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 137/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETXNRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KVGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPXIEYLCNNGQAXKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + Q G +
Sbjct: 396 XKLGVQDPTALNTLIRGXSQEGSPD 420
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 8/217 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ GL+ V YN++LK + + G + +L+ M++ GI R TY T +SAYA
Sbjct: 233 LSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYAR 292
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ ++ M A +P++ W Y + G + G +D+A + + E +
Sbjct: 293 LGWIKQATNVVEAMTAFGFEPDL---WT-YNVLAAGLCQAGKVDEAFKLKDEMEHLSIVS 348
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN ++ KY + D L + E+ K VK + V+ L + LE A
Sbjct: 349 PDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGR 408
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ + L D N LID YC+ + KA L++
Sbjct: 409 LKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMD 445
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 143/340 (42%), Gaps = 17/340 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + GLA + YN+++ Y K N K LM EM +G+ D +T T L
Sbjct: 409 LKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 468
Query: 61 ASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+E +++L + P D V Y TV Y K + AL + + ++
Sbjct: 469 EKRYEEAEELL---RSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPS 525
Query: 119 VNSAYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ + YN ++ GK + + ++ EL KK + + Y +I + K DLE A +
Sbjct: 526 IYT-YNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFH 584
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ D N L++ C +G LEKA L KG+++ V ++ L ++
Sbjct: 585 NKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKD 644
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ A+ + A +P + L + G A+N + L++ G +
Sbjct: 645 GDVDTALHFFADMEAR-----GLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLS 699
Query: 298 TDLQDKLL----DNVQNGK-SNLETLRELYGNSLAGNEET 332
L+ + V+ GK +++ E GN+ G++E+
Sbjct: 700 ERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQES 739
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 137/322 (42%), Gaps = 38/322 (11%)
Query: 1 MQKMRDLGL---ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
+K RD+ L A + Y ++++ Y G+F+ SL HEM+ENG+ + Y +
Sbjct: 222 FEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGG 281
Query: 58 YA-DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ EG M++ V + IY + + K G + +A+ + ++ +++
Sbjct: 282 LCKEGKCVEGYAVFEKMIQKGCKV--NVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLE 339
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEK 175
V + Y V++ K G+ D+ + E + V V Y ++I L K + AEK
Sbjct: 340 PDVVT-YGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEK 398
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-Y 234
+FEE + D+ N LID + G ++A + +G + V ++ + G +
Sbjct: 399 LFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLF 458
Query: 235 RQNSQIHKAVEAMK-----------KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283
R+ HK EA+K AA++ L S+ CL G + A
Sbjct: 459 RE----HKNEEALKMWDMMIDKGITPTAAAFRAL--------SIGLCLS-----GKVARA 501
Query: 284 ENFIELLNDKGFIP-TDLQDKL 304
++ L G IP T +D L
Sbjct: 502 CKLLDELAPMGVIPETAFEDML 523
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 115/276 (41%), Gaps = 36/276 (13%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K R +G NS++K + G E+L + M+ENG+ +TY L+ ++
Sbjct: 122 KFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSV 181
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ--------- 113
E +++L +ME + + D V Y T+ GY +VG KA + E +
Sbjct: 182 FIESAERVLEVME-NGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITY 240
Query: 114 ---IKGAKVNSAYNVILTLY----------------------GKYGKKDDVLRIWE-LYK 147
I+ +++ L+LY K GK + ++E + +
Sbjct: 241 MTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQ 300
Query: 148 KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK 207
K KV Y +I S K ++ A +FE + + L D +++ C++G L++
Sbjct: 301 KGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDE 360
Query: 208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
A + ++ G ++ + L G + ++H+A
Sbjct: 361 AMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEA 396
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 101/248 (40%), Gaps = 4/248 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ GL V Y ++ K+G ++ + NG+ + Y + +
Sbjct: 330 FERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGK 389
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A +K+ M D Y + + K G D+ALA K+ E++ V
Sbjct: 390 AGRVHEAEKLFEEM-VKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVY 448
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y +++ + K ++ L++W++ K + +R + L + A K+ +E
Sbjct: 449 T-YTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDE 507
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ +T + L +V C+ G +++A L + +GREI + L R+
Sbjct: 508 LAPMGVIPETAFEDML-NVLCKAGRIKEACKLADGFVDRGREIPGRVRTVLINALRKAGN 566
Query: 240 IHKAVEAM 247
A++ M
Sbjct: 567 ADLALKLM 574
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 20/185 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
M++ G T YN ++ + + + L+ EM+E GI D TY T LS A
Sbjct: 377 SSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKA 436
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D +D++L M D P+V + + T+ +GY KVG +D+AL +L+ +E G
Sbjct: 437 GDFAAVDELLGKMIDDGCQPSV----ITFGTLVHGYCKVGKIDEALRILRSMDES--GIH 490
Query: 119 VNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVIS--SLLK-LDDLESA 173
N+ YN ++ K G D + ++ E+ +K+V NV + +LLK L D
Sbjct: 491 PNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPA------NVTTFNALLKGLRDKNMP 544
Query: 174 EKIFE 178
EK FE
Sbjct: 545 EKAFE 549
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 108/265 (40%), Gaps = 21/265 (7%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V Y++++ T N L HE G + D Y T +S A E + +
Sbjct: 319 VTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASS 378
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M+ + LD Y + G+ + L +A +L++ +E V + YN +L+ K
Sbjct: 379 MK-EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCT-YNTLLSGSCKA 436
Query: 134 GKKDDVLRIWELYKKAV------KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
G D + EL K + V+ G ++ K+ ++ A +I + +
Sbjct: 437 G---DFAAVDELLGKMIDDGCQPSVITFG--TLVHGYCKVGKIDEALRILRSMDESGIHP 491
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
+ I N LID C+ G ++ A L + K K +V ++ L G R + KA E M
Sbjct: 492 NNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELM 551
Query: 248 -----KKVLAAYQT---LVKWKPSV 264
++ Y T L++W P +
Sbjct: 552 DQMREERCFPDYVTVDVLMEWLPVI 576
>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
Length = 661
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 140/339 (41%), Gaps = 18/339 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M + G+A YN M+ + G + L+ +M E I D T+ +SA
Sbjct: 314 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVK 373
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+K+ M + D V Y ++ G+ K D A M + +
Sbjct: 374 EGKLFEAEKLCDEM-LHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-----DLMASPDV 427
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N I+ +Y + + D+ +++ E+ ++ + Y +I ++D+L +A+ +F+E
Sbjct: 428 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 487
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S +C DT N L+ +C N LE+A L ++ ++ ++ + G + S+
Sbjct: 488 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 547
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A + L + +P V++ + F + I A + D G P +
Sbjct: 548 VDEAWD-----LFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 602
Query: 300 -----LQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
L L + KS +E + E+ N +G+ T+
Sbjct: 603 STYNTLIRGCLKAGEIDKS-IELISEMRSNGFSGDAFTI 640
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 107/253 (42%), Gaps = 7/253 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM GL V Y +++ K G+ + +L+ +MEE I D Y +
Sbjct: 244 VNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCK 303
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
H + + M + +A + Y + +G+ G A +L+ E+ V
Sbjct: 304 DGHHSDAQYLFSEM-LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVL 362
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ +N +++ K GK + ++ E+ + + Y ++I K + + A+ +F+
Sbjct: 363 T-FNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDL 421
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S D N +IDVYCR +++ L+ +G + ++ L G+ +
Sbjct: 422 MASP----DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 477
Query: 240 IHKAVEAMKKVLA 252
++ A + +++++
Sbjct: 478 LNAAQDLFQEMIS 490
>gi|449457829|ref|XP_004146650.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 222
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 16/130 (12%)
Query: 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK---------VNSAYNVILTLYGKYGKK 136
++ + N Y DKA A+L+K +E ++ K +N A ++ GK+
Sbjct: 99 VHIALLNCYAHEKYADKANAVLQKIKEMVETLKKAASLCPSELNYAKEILAAFLD--GKQ 156
Query: 137 DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLI 196
D+ E +K V +L + + +D++ AE+I++EWE+Q L YD RIPN L+
Sbjct: 157 DE-----EETEKVVNLLREKDDSHPARDNMPNDIKGAERIYKEWETQKLSYDLRIPNLLV 211
Query: 197 DVYCRNGLLE 206
D YCR GL+E
Sbjct: 212 DAYCRAGLME 221
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 140/339 (41%), Gaps = 18/339 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M + G+A YN M+ + G + L+ +M E I D T+ +SA
Sbjct: 319 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVK 378
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+K+ M + D V Y ++ G+ K D A M + +
Sbjct: 379 EGKLFEAEKLCDEM-LHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-----DLMASPDV 432
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N I+ +Y + + D+ +++ E+ ++ + Y +I ++D+L +A+ +F+E
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 492
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S +C DT N L+ +C N LE+A L ++ ++ ++ + G + S+
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 552
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A + L + +P V++ + F + I A + D G P +
Sbjct: 553 VDEAWD-----LFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 607
Query: 300 -----LQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
L L + KS +E + E+ N +G+ T+
Sbjct: 608 STYNTLIRGCLKAGEIDKS-IELISEMRSNGFSGDAFTI 645
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 107/253 (42%), Gaps = 7/253 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM GL V Y +++ K G+ + +L+ +MEE I D Y +
Sbjct: 249 VNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCK 308
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
H + + M + +A + Y + +G+ G A +L+ E+ V
Sbjct: 309 DGHHSDAQYLFSEM-LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVL 367
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ +N +++ K GK + ++ E+ + + Y ++I K + + A+ +F+
Sbjct: 368 T-FNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDL 426
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S D N +IDVYCR +++ L+ +G + ++ L G+ +
Sbjct: 427 MASP----DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 482
Query: 240 IHKAVEAMKKVLA 252
++ A + +++++
Sbjct: 483 LNAAQDLFQEMIS 495
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 46/249 (18%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL Y+ ++ Y KT N EK D L+ +M +G+ + TY L Y ++DHE +
Sbjct: 555 GLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKV 614
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
IL M + D IY V + L +SE + A+ ++L
Sbjct: 615 SSILQSMLGSGDKP-DNHIYGIV-------------IRNLSRSE------NMEVAF-MVL 653
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL-- 185
T K G D+ + Y ++IS L K+ D+E A + +E + L
Sbjct: 654 TEVEKNGLVPDL---------------HIYSSLISGLCKMADMEKAVGLLDEMAKEGLEP 698
Query: 186 ---CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
CY N LID +CR+G + +A N+ + KG + ++ L G +N I
Sbjct: 699 GIVCY-----NALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITD 753
Query: 243 AVEAMKKVL 251
A + K +L
Sbjct: 754 AFDLYKDML 762
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 98/422 (23%), Positives = 148/422 (35%), Gaps = 99/422 (23%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M DLGLA T N +LK + E + L ME GI D YTY T L A+ A D
Sbjct: 201 MGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARD 260
Query: 64 HEGIDKILTMME----------------------------------ADPNVALDWVIYAT 89
+ K+ M D ++ D Y
Sbjct: 261 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 320
Query: 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIW-ELYK 147
+ NG K G L +A A+L E G K N Y ++ + K GK + I E+
Sbjct: 321 LMNGLCKGGRLKEAKALL--DEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMIS 378
Query: 148 KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR----------------- 190
V+ Y N+I L K+ L A K+ E DT
Sbjct: 379 AGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDG 438
Query: 191 -------------IPN-----FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
+PN +I+ C+NG ++A NL+ +G + + + L
Sbjct: 439 AFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLII 498
Query: 233 GYRQNSQIHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284
G+ + I A E+++ + L Y +L+K +V G I AE
Sbjct: 499 GHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTV-------------GRIEEAE 545
Query: 285 NFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDT-SDL 343
+ + +G +P + L + NLE +L L + P DT +DL
Sbjct: 546 EYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLK----PNADTYTDL 601
Query: 344 IE 345
+E
Sbjct: 602 LE 603
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 116/257 (45%), Gaps = 9/257 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ ++Y+++++ K G + L++EM + G D +TY + +
Sbjct: 373 LNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQ 432
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KGAKV 119
D +G ++L M + + + Y + NG + G +A +L EE I +G K
Sbjct: 433 HYDKDGAFELLNEMR-NSGILPNAYTYGIMINGLCQNGESKEAGNLL---EEMISEGLKP 488
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKI 176
N+ Y ++ + K G E KA VL + Y ++I L + +E AE+
Sbjct: 489 NAFMYAPLIIGHSKEGHISLACESLENMTKA-NVLPDLFCYNSLIKGLSTVGRIEEAEEY 547
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ + + + L D + LI YC+ LEKA+ L+ G + + ++ L GY +
Sbjct: 548 YAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFK 607
Query: 237 NSQIHKAVEAMKKVLAA 253
++ K ++ +L +
Sbjct: 608 SNDHEKVSSILQSMLGS 624
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/306 (19%), Positives = 126/306 (41%), Gaps = 60/306 (19%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M + GL Y +L+ Y+K+ + EK+ S++ M +G D + Y + +
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 642
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + E +LT +E + + D IY+++ +G K+ ++KA+ +L
Sbjct: 643 SENMEVAFMVLTEVEKN-GLVPDLHIYSSLISGLCKMADMEKAVGLLD------------ 689
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
E+ K+ ++ Y +I + D+ A +F+
Sbjct: 690 -----------------------EMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSI 726
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNS 238
++ L + LID C+NG + A +L ++ + R I ++ Y LATG +
Sbjct: 727 LAKGLLPNCVTYTALIDGNCKNGDITDAFDL--YKDMLDRGIAPDAFVYNVLATGCSDAA 784
Query: 239 QIHKAVEAMKKV-------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ +A+ +++ ++ + TLV+ F G + E + ++
Sbjct: 785 DLEQALFLTEEMFNRGYAHVSLFSTLVRG-------------FCKRGRLQETEKLLHVMM 831
Query: 292 DKGFIP 297
D+ +P
Sbjct: 832 DREIVP 837
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 17/276 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+RD G TV YN ++ Y + ++ ++ ++M+E G DR TYCT + +A A
Sbjct: 386 VRD-GCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGF 444
Query: 64 HE-GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
+ +D M EA ++ D Y+ + N GK G L A + E +G N
Sbjct: 445 LDIAMDMYQRMQEA--GLSPDTFTYSVIINCLGKAGHLPAAHRLF--CEMVGQGCTPNLV 500
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+N+++ L+ K + L+++ ++ + Y V+ L LE AE +F E
Sbjct: 501 TFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEM 560
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + D + L+D++ + G ++KA G +V + L + + + ++
Sbjct: 561 QRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRM 620
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVES----LAACLD 272
+A ++ +LA + PS+++ L+ C D
Sbjct: 621 SEAYNLLQSMLA-----LGLHPSLQTYTLLLSCCTD 651
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 128/299 (42%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM G+ V YN+++ K G + + M + G D Y T L YA
Sbjct: 264 FRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYAT 323
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L +M + D I+ + Y K G++D+A+ K +Q G N
Sbjct: 324 EGYLVQMHQLLDVMVRN-GTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQ--GLHPN 380
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y ++ + GK DD + ++ L + + +R +I L D + AE++
Sbjct: 381 IVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAV 440
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C +T N L++ C+ G++ +A+N+ + + V ++ L GY +
Sbjct: 441 EMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDG 500
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ +A + ++ ++ L KP+ + ++ + G I A + + KG P
Sbjct: 501 KVDEATKLLEGMV-----LDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNP 554
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 118/296 (39%), Gaps = 13/296 (4%)
Query: 8 GLARTTVVYNSMLK-LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G + ++ +LK L + + +D + M G T + ++Y L D + +
Sbjct: 126 GWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQ 185
Query: 67 IDKILTMMEADPN---VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
+L M AD D V Y TV NG + G LDKA + + +Q G N
Sbjct: 186 ALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQ--GMSPNCIT 243
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN +L Y GK + + I+ ++ + V+ Y ++ L K A K+F+
Sbjct: 244 YNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMV 303
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D+ I L+ Y G L + L++ G + + L Y ++ +
Sbjct: 304 KKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVD 363
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A+ A K+ Q L P++ + +D G + A + + L +G P
Sbjct: 364 EAMLAFSKM--RQQGL---HPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTP 414
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 110/257 (42%), Gaps = 9/257 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+MR + +++ + + G EK + + +++E G+ D Y Y + AY+
Sbjct: 296 FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSR 355
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A G +I ++M+ +P D Y + + YG+ GL + A A+ + +++
Sbjct: 356 AGFPYGAAEIFSLMQHMGCEP----DRASYNIMVDAYGRAGLHEDAQAVF-EVMKRLGIT 410
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++ ++L+ Y + GK I +++K +K ++++ +L E E++
Sbjct: 411 PTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEV 470
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E D N LI++Y R G + E L + V +W Y +
Sbjct: 471 LTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSR 530
Query: 237 NSQIHKAVEAMKKVLAA 253
Q ++ +E ++++ A
Sbjct: 531 RKQYNRCLEVFEEMIDA 547
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 121/288 (42%), Gaps = 12/288 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ YN ++ Y + ++K +S E+ E TY L AY + E + +
Sbjct: 168 VICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFA 227
Query: 73 MME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
M P A V+Y +G K G KA+ + ++ + + + Y +++ LY
Sbjct: 228 EMRKYGFPPSA---VVYNAYIDGLMKGGDTQKAVEIFERMKRD-RCQPSTATYTMLINLY 283
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
GK K L+++ E+ + K + ++++ + E AE+IFE+ + L D
Sbjct: 284 GKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDV 343
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N L++ Y R G A + + + G E S+ + Y + + +H+ +A+ +
Sbjct: 344 YAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGR-AGLHEDAQAVFE 402
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
V+ + P+++S L + G + E + ++ G P
Sbjct: 403 VMKR----LGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 446
>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 481
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 137/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVX 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAAKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 LKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 2/229 (0%)
Query: 8 GLARTTVVYNSMLKLYYKTGNF-EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
GL ++ N +LK + + E LD L+H E G D ++Y L + D
Sbjct: 141 GLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 200
Query: 67 IDKILTMM-EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
D +L MM E + D V Y+TV +G+ K G ++KA + K+ ++ + +V
Sbjct: 201 ADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSV 260
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ L + ++ K V N Y N+I + A ++F+E ++
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 320
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
D + L+ C+ G +++A ++ + +KG+ +V S+ + GY
Sbjct: 321 LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGY 369
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 15/243 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ML Y G + L M +GI D YT+ + AYA+ + I M
Sbjct: 362 YTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMR 421
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
D V D V Y TV ++G +D A+ + +Q A AY+ ++ + +G
Sbjct: 422 -DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYAYHCLIQGFCTHG- 478
Query: 136 KDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
+L+ EL + ++NNG + ++I++L KL + A+ IF+ + L
Sbjct: 479 --SLLKAKELISE---IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPT 533
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ + L+D YC G +EKA + + G E + + L GY + +I + + +
Sbjct: 534 AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFR 593
Query: 249 KVL 251
++L
Sbjct: 594 EML 596
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 15/220 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT---RLSA 57
+++M + G+ YN+++ Y TG +++ + EM + I D T L
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336
Query: 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
Y + + + M +PNV Y + NGY G L + + + G
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPNV----FSYTIMLNGYATKGCLVDMTDLF----DLMLGD 388
Query: 118 KVNS---AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ +NV++ Y G D + I+ E+ VK YR VI++L ++ ++ A
Sbjct: 389 GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDA 448
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ F + Q + D + LI +C +G L KA+ L++
Sbjct: 449 MEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELIS 488
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 70/342 (20%), Positives = 134/342 (39%), Gaps = 46/342 (13%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY-------CT-- 53
+MRD G+ V Y +++ + G + ++M + G+ D+Y Y CT
Sbjct: 419 EMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHG 478
Query: 54 -----------------RLSAYADASDHEGIDKILTMMEAD------PNVAL--DWVIYA 88
L +S + K+ +M+A NV L V+Y+
Sbjct: 479 SLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYS 538
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW-ELY 146
+ +GY VG ++KAL + G + N Y ++ Y K G+ D+ L ++ E+
Sbjct: 539 MLMDGYCLVGKMEKALRVFDAMVSA--GIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
+K +K Y +I L + A+ F E + + N ++ +N +
Sbjct: 597 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFD 656
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVES 266
+A L + +I++ + + G Q ++ +A K L A + P V +
Sbjct: 657 EAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEA-----KDLFASISRSGLVPCVVT 711
Query: 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV 308
+ + EG + AE+ + + G P +LL++V
Sbjct: 712 YSIMITNLIKEGLVEEAEDMFSSMQNAGCEP---DSRLLNHV 750
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 12/235 (5%)
Query: 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY---GKYGKKDDVLRIWELYKKA 149
G+ + D+AL +L ++ +Y+++L GK G+ DD+LR+
Sbjct: 155 GFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV 214
Query: 150 VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
Y VI K D+ A +F+E + + D + ++ C+ ++KAE
Sbjct: 215 CSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAE 274
Query: 210 NLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL 267
+ KG + +W Y L GY Q +AV K+ + + L P V +L
Sbjct: 275 AFLRQMVNKG--VLPNNWTYNNLIYGYSSTGQWKEAVRVFKE-MRRHSIL----PDVVTL 327
Query: 268 AACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY 322
+ + G I A + + + KG P ++ N K L + +L+
Sbjct: 328 SMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLF 382
>gi|302761110|ref|XP_002963977.1| hypothetical protein SELMODRAFT_82002 [Selaginella moellendorffii]
gi|300167706|gb|EFJ34310.1| hypothetical protein SELMODRAFT_82002 [Selaginella moellendorffii]
Length = 716
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 39/282 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M++ G+ V YN+++ Y + G+ E+ + M E + + TY T + A+A
Sbjct: 452 VEDMKEAGVELDVVSYNTLINGYLEAGDNEQALAAFTRMREAKVPASKVTYGTLMKAFAR 511
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + K+ T M DP V +D V + T+ + Y + GL A L+ + + + N
Sbjct: 512 SGRTELVVKVFTQMALDPRVRVDVVAWNTLIDAYARAGLEQDATRALEDMKSR-GFSPTN 570
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN ++ YG+ ++ +W E+ ++V+ + R+ +
Sbjct: 571 ATYNTLVKTYGRSRNFGLLILLWKEINARSVEEDSAAVRD------------------KP 612
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN----------HEKLKGREIHVKSWYY 229
AL D + + LID + R G + A +V+ K K + ++V+ +
Sbjct: 613 LVVGALKPDAALLDSLIDSFVRGGYFQLALQVVDCMDRQGIHSGRAKAKYKRLYVELYAN 672
Query: 230 LATGY----RQNSQI---HKAVEAMKKVLAAYQTLVK--WKP 262
L T R+ S+ +AVEA K + +L K W+P
Sbjct: 673 LYTSRHTSERRKSKTAERRRAVEAFKFWVGLPNSLYKSEWRP 714
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 109/256 (42%), Gaps = 30/256 (11%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+ T+ +N M+KLY + +KL+ ++H M + + D T+ + ++A+ +
Sbjct: 256 MPAFGVKANTLTFNVMIKLYARVEKLDKLEQILHTMADADVDPDATTFNSLVAAFVGLGE 315
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-- 121
L++ E+ ++ + G G + + A+L K E AK
Sbjct: 316 -------LSLAES--------IVQSLRGEGEHQT----RVPALLPKLREH--SAKFQPDV 354
Query: 122 -AYNVILTLYGKYGKKDDVLRIWELYK--KAVKVLNN--GYRNVISSLLKLDDLESAEKI 176
Y ++ Y ++ + D +++ + K + N + I + K+ L+ A I
Sbjct: 355 RTYTTLMKGYVQHNRVSDAMQLLVAMQQEKTSAAMPNEVTFTTAIRACAKMGLLDEARVI 414
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGL--LEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+E +Q + + N L+ C + +++A +V K G E+ V S+ L GY
Sbjct: 415 LQEMATQKVAANVVTYNTLLQGVCVFPITDMKRALEIVEDMKEAGVELDVVSYNTLINGY 474
Query: 235 RQNSQIHKAVEAMKKV 250
+ +A+ A ++
Sbjct: 475 LEAGDNEQALAAFTRM 490
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+ KM+ GL+ V YN++L + + G + +L+ M++ GI R TY T +SAYA
Sbjct: 232 LSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYAR 291
Query: 60 -----DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
A+D + + +T +P++ W Y + G + G +D+A LK EQ+
Sbjct: 292 LGWIKQATD---VVEAMTAFGFEPDL---WT-YNVLAAGLCQAGKVDEAFK-LKDEMEQL 343
Query: 115 KGAKVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLES 172
+ YN ++ K + D L + E+ +K VK + ++ L + LE
Sbjct: 344 GIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEE 403
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
A E + L D N LID C+ G + KA L++
Sbjct: 404 ALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMD 444
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 122/308 (39%), Gaps = 28/308 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G+ + V +N ++K + G E+ + M E G+T D TY T + A
Sbjct: 373 LEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCK 432
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + + K +M+ + +D T+ K ++A +L+ + Q
Sbjct: 433 AGN---VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLR-APPQRGFVP 488
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+Y ++ Y K K + L +W E+ K+ + + Y +I L + L A
Sbjct: 489 DEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKL 548
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E L D N +I YC+ G LEKA N + V + L G
Sbjct: 549 NELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLY 608
Query: 238 SQIHKA-------VEAMKKV-LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289
++ KA VE KKV + Y TL++ A C D D+ A F
Sbjct: 609 GRLEKAMKLFESWVEKGKKVDVITYNTLIQ--------ALCKD-----NDVDTALRFFAD 655
Query: 290 LNDKGFIP 297
+ +G P
Sbjct: 656 MEVRGLQP 663
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 55/291 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + GL + YN+++ K GN K LM EM +G+ D +T T L
Sbjct: 408 LEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 467
Query: 61 ASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALA----MLKKS---- 110
+E +++L A P D V Y TV Y K + AL M+K+
Sbjct: 468 EKRYEEAEELL---RAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPS 524
Query: 111 ----EEQIKGAKV----------------------NSAYNVILTLYGKYGKKDDVLRIWE 144
IKG ++ YN+I+ Y K G D+ + ++
Sbjct: 525 ISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEG---DLEKAFQ 581
Query: 145 LYKKAVKVLNNGYR-------NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
+ K V+ N ++ +++ L LE A K+FE W + D N LI
Sbjct: 582 FHNKMVE---NSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQ 638
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
C++ ++ A +++G + V ++ L + S+ ++VEA K
Sbjct: 639 ALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSAL---SEAGRSVEAQK 686
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 110/257 (42%), Gaps = 9/257 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+MR + +++ + + G EK + + +++E G+ D Y Y + AY+
Sbjct: 226 FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSR 285
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A G +I ++M+ +P D Y + + YG+ GL + A A+ + +++
Sbjct: 286 AGFPYGAAEIFSLMQHMGCEP----DRASYNIMVDAYGRAGLHEDAQAVF-EVMKRLGIT 340
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++ ++L+ Y + GK I +++K +K ++++ +L E E++
Sbjct: 341 PTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEV 400
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E D N LI++Y R G + E L + V +W Y +
Sbjct: 401 LTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSR 460
Query: 237 NSQIHKAVEAMKKVLAA 253
Q ++ +E ++++ A
Sbjct: 461 RKQYNRCLEVFEEMIDA 477
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 121/288 (42%), Gaps = 12/288 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ YN ++ Y + ++K +S E+ E TY L AY + E + +
Sbjct: 98 VICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFA 157
Query: 73 MME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
M P A V+Y +G K G KA+ + ++ + + + Y +++ LY
Sbjct: 158 EMRKYGFPPSA---VVYNAYIDGLMKGGDTQKAVEIFERMKRD-RCQPSTATYTMLINLY 213
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
GK K L+++ E+ + K + ++++ + E AE+IFE+ + L D
Sbjct: 214 GKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDV 273
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N L++ Y R G A + + + G E S+ + Y + + +H+ +A+ +
Sbjct: 274 YAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGR-AGLHEDAQAVFE 332
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
V+ + P+++S L + G + E + ++ G P
Sbjct: 333 VMKR----LGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 376
>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
Length = 619
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 130/300 (43%), Gaps = 10/300 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M+++G V +NS++ Y K G ++++ L+ EM +G D TY ++ +
Sbjct: 212 SRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKF 271
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
E M+ + V + V ++T + + K GL+ +A+ + ++ +++G +N
Sbjct: 272 GRMETAYGYFAAMKRE-GVMANVVTFSTFVDAFCKEGLVREAMKLF--AQMRVRGMALNE 328
Query: 122 -AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++ K G+ DD + + E+ ++ V + Y ++ L K + AE +
Sbjct: 329 FTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRM 388
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E + + + LI + N EKA L++ K KG E+ + + L G
Sbjct: 389 MEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL---CN 445
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+HK EA K L +P+ +D G + A ++ + D GF P +
Sbjct: 446 VHKLDEA--KSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNN 503
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 112/258 (43%), Gaps = 15/258 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR G V YN+++ + K G E M+ G+ + T+ S + D
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTF----STFVD 301
Query: 61 ASDHEGIDKILTMMEADPNV---ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A EG+ + + A V AL+ Y + +G K G LD A+ +L + Q G
Sbjct: 302 AFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ--GV 359
Query: 118 KVNSA-YNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+N Y V+ L K + +DVLR+ E K V+ Y +I + E A
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVLRMME--KAGVRANELLYTTLIHGHFMNKNSEKA 417
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ E +++ L D + LI C L++A++L+ G E + + +
Sbjct: 418 LGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDA 477
Query: 234 YRQNSQIHKAVEAMKKVL 251
++ ++ +A+ ++K+L
Sbjct: 478 CFKSGKVPEAIAMLQKIL 495
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 110/269 (40%), Gaps = 24/269 (8%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V Y ++ K + + ++ ME+ G+ + Y T + + + E
Sbjct: 358 GVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKA 417
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVI 126
+L+ M+ + + LD +Y + G V LD+A ++L K +E G + N Y +
Sbjct: 418 LGLLSEMK-NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES--GLEPNYIIYTTM 474
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+ K GK + + + + K+L++G++ L A ++F E + +
Sbjct: 475 MDACFKSGKVPEAIAMLQ------KILDSGFQPNNGCL------NEAVQLFNEMVHKGMS 522
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D + L+D Y + G L A L G ++ + + +G+ + + +A E
Sbjct: 523 LDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREV 582
Query: 247 MKKVL--------AAYQTLVKWKPSVESL 267
+++ A Y L+ P + L
Sbjct: 583 FSEMIGHGIAPDRAVYNCLITQIPEIREL 611
>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
Length = 645
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 6/224 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+A T VYNS++ +++GN ++ +L EM G+ D +T + D
Sbjct: 316 EMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGG 375
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
D+ L ++ D V L+ Y + + Y ++G L++ALA + E G + N
Sbjct: 376 QMHVADRFLQGVQED-GVNLNAAAYNALIDEYCRIGNLEEALATCTRMTE--VGIEPNVV 432
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+Y+ ++ + K GK + I+ E+ K ++ Y +I K +++A ++ +E
Sbjct: 433 SYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEM 492
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLV-NHEKLKGREIH 223
+ + + L+D CR +++A V + LK +IH
Sbjct: 493 IENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIH 536
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 119/302 (39%), Gaps = 24/302 (7%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y +M+ + G + L M+E G+ ++YTY +S + D ++ +
Sbjct: 221 VVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDD---VNSAVV 277
Query: 73 MME------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126
+ + +PN VI+ T+ +G+ K +A M + + A YN +
Sbjct: 278 LYQELLKSGLNPNA----VIFTTLIDGFCKAKRFSEAKGMFLEMP-RFGVAPTVPVYNSL 332
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ + G + L ++ E+ + + V+ L + A++ + + +
Sbjct: 333 MDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGV 392
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ N LID YCR G LE+A G E +V S+ L G+ + +
Sbjct: 393 NLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGK------ 446
Query: 246 AMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDK 303
M+ +A Y +V +P+V + A + G I A + + + G P +
Sbjct: 447 -MQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVS 505
Query: 304 LL 305
+L
Sbjct: 506 VL 507
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 116/248 (46%), Gaps = 15/248 (6%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+YN ++K + K G+F K L ++ E G++ D +TY A + +K+ +
Sbjct: 99 IYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFV 158
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
+ D + ++ + Y +VG + L++ E++ V S +NV+++ Y K
Sbjct: 159 -VKSGLEFDTYVCNSLMDMYAEVGRVQN----LRQVFEEMPQRDVVS-WNVLISGYVKCR 212
Query: 135 KKDDVLRIWELYKKAVKVLNNGYRNV--ISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ +D + ++ ++ + N V +S+ + L LE ++I + + L + +I
Sbjct: 213 RYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEI-HRYVREQLGFTIKIG 271
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
N L+D+YC+ G L A + N +K V W + +GY Q+ +A E ++ +
Sbjct: 272 NALVDMYCKCGHLSIAREIFNDMPIKT----VICWTSMVSGYVNCGQLDEARELFER--S 325
Query: 253 AYQTLVKW 260
+ +V W
Sbjct: 326 PVRDVVLW 333
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 105/246 (42%), Gaps = 10/246 (4%)
Query: 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDK 69
R V++ +M+ Y + F+ +L EM+ ++ DR+T L+ A E
Sbjct: 327 VRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKW 386
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129
I ++ + + +D V+ + Y K G ++K+L + +E K +++ I+
Sbjct: 387 IHGYIDEN-KIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKE-----KDTASWTSIICG 440
Query: 130 YGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
GK L ++ E+ + VK + + V+S+ +E K F + +
Sbjct: 441 LAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSM-TAVYQIE 499
Query: 189 TRIPNF--LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
++ ++ LID+ R G L++AE L+ E+ V + L + R + +
Sbjct: 500 PKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERV 559
Query: 247 MKKVLA 252
K+++
Sbjct: 560 AKRLVG 565
>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
Length = 543
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 132/314 (42%), Gaps = 49/314 (15%)
Query: 23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL 82
+ K+G + +L+ EM +G+ + Y + L Y D + ++L +ME
Sbjct: 142 FCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIME------- 194
Query: 83 DWVIYATVGNGYGKVGLLDKA--LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL 140
+ I ATVG V L A ++ ++ +++K V + + Y + +V
Sbjct: 195 NGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVR 254
Query: 141 RIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
R E++ + V NG Y +I+ K+ +E+AE + + + + + ++ I N
Sbjct: 255 RASEVFDECV---GNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFN 311
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL-- 251
+ID YCR G+++ A + + G E+ V ++ LA G + +++ +A + ++
Sbjct: 312 TMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEK 371
Query: 252 ------AAYQTLVKWK----------------------PSVESLAACLDYFKDEGDIGGA 283
Y TL+ PSV + +D + +G I A
Sbjct: 372 GVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREA 431
Query: 284 ENFIELLNDKGFIP 297
E F + + KG +P
Sbjct: 432 ERFRKEMEKKGLVP 445
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 5/232 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ++ + K G E + L+ +M+ G+ +++ + T + Y + K+ ME
Sbjct: 275 YGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAME 334
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYG 134
+ LD Y T+ G +V + +A +L E KG N Y +++++ K G
Sbjct: 335 -KMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIE--KGVPPNYVTYTTLISIHCKEG 391
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ R++ E+ K Y ++ +K + AE+ +E E + L D
Sbjct: 392 DMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYA 451
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
L+ +C NG ++ A L K +G E +V ++ L +G + + +A +
Sbjct: 452 SLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQ 503
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 152/347 (43%), Gaps = 32/347 (9%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ V Y+S++ G + L+ +M E I D +T+ + A+
Sbjct: 75 KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 134
Query: 62 SDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+K+ M DP++ V Y+++ NG+ LD+A M + +
Sbjct: 135 GKLVEAEKLYDEMVKRSIDPSI----VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 190
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
V + YN ++ + KY + ++ + ++ E+ ++ + Y +I L + D + A++IF
Sbjct: 191 VVT-YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 249
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E S + + N L+D C+NG LEKA + + + E + ++ + G +
Sbjct: 250 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 309
Query: 238 SQIHK--------AVEAMKKVLAAYQTLVKW---KPSVESLAACLDYFKDEGDIGGAENF 286
++ +++ +K + AY T++ K S E A K++G
Sbjct: 310 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT------- 362
Query: 287 IELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
L + G T ++ +L D + +++ E ++E+ AG+ T+
Sbjct: 363 ---LPNSGCYNTLIRARLRDG--DREASAELIKEMRSCGFAGDASTI 404
>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Glycine max]
Length = 589
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 41/282 (14%)
Query: 14 VVYNSMLKLYYKTGNFEK-----LDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
V YNS++ L K G +E L+ L H M+ N +TY+ + Y D D I
Sbjct: 306 VTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDD--IL 363
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILT 128
KI+ + P V Y + NG K GLLD+A++ + + + YN +L+
Sbjct: 364 KIMNETSSPPT----HVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIIT-YNTLLS 418
Query: 129 LYGKYGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
K G D+ +++ L + Y VI L +L +ESA+++++E + +
Sbjct: 419 GLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIP 478
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE-- 245
D + L +CR LE+A L+ +K + I ++ + G + ++ A++
Sbjct: 479 DEITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQKKVDIAIQVL 538
Query: 246 ----------------AMKKVLA----------AYQTLVKWK 261
A+ K +A +QTL+KWK
Sbjct: 539 DLMVKGQCNPDERIYSALIKAVADGGMLKEANDLHQTLIKWK 580
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 110/257 (42%), Gaps = 9/257 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+MR + +++ + + G EK + + +++E G+ D Y Y + AY+
Sbjct: 334 FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSR 393
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A G +I ++M+ +P D Y + + YG+ GL + A A+ + +++
Sbjct: 394 AGFPYGAAEIFSLMQHMGCEP----DRASYNIMVDAYGRAGLHEDAQAVF-EVMKRLGIT 448
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++ ++L+ Y + GK I +++K +K ++++ +L E E++
Sbjct: 449 PTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEV 508
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E D N LI++Y R G + E L + V +W Y +
Sbjct: 509 LTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSR 568
Query: 237 NSQIHKAVEAMKKVLAA 253
Q ++ +E ++++ A
Sbjct: 569 RKQYNRCLEVFEEMIDA 585
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 121/288 (42%), Gaps = 12/288 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ YN ++ Y + ++K +S E+ E TY L AY + E + +
Sbjct: 206 VICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFA 265
Query: 73 MME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
M P A V+Y +G K G KA+ + ++ + + + Y +++ LY
Sbjct: 266 EMRKYGFPPSA---VVYNAYIDGLMKGGDTQKAVEIFERMKRD-RCQPSTATYTMLINLY 321
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
GK K L+++ E+ + K + ++++ + E AE+IFE+ + L D
Sbjct: 322 GKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDV 381
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N L++ Y R G A + + + G E S+ + Y + + +H+ +A+ +
Sbjct: 382 YAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGR-AGLHEDAQAVFE 440
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
V+ + P+++S L + G + E + ++ G P
Sbjct: 441 VMKR----LGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 484
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 119/261 (45%), Gaps = 15/261 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYA 59
+++M + G + TV +N ++ +T + ++ ++ +G+ T+ + +S Y
Sbjct: 277 VERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYC 336
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A E + M A + + V Y + NGYGKVG L A+ + ++ +++
Sbjct: 337 KAGKLEDAMAVYNDMVAS-GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ-MTRLRCPPD 394
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
++ ++ Y + G+ DD LRIW ++ + ++ + +I SL K + + A +
Sbjct: 395 VVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLN 454
Query: 179 EW------ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
E QA Y N +IDV C+ G +++A + + KG ++ L
Sbjct: 455 ELNLRPDIAPQAFIY-----NPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILII 509
Query: 233 GYRQNSQIHKAVEAMKKVLAA 253
GY S+I +A+ +++ A
Sbjct: 510 GYCMKSRISEAIMFFHEMVEA 530
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR G+ + YN++L G E+ + M E G+ D TY + Y A
Sbjct: 170 QMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQAD 229
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
HEG+ ++L ME N A D V Y + YG+ G A M K+ +E V +
Sbjct: 230 RHEGVGELLREMEQAGN-APDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVT- 287
Query: 123 YNVILTLYGKYGKKDDV 139
++ +L YGK+G D+V
Sbjct: 288 FSTLLEAYGKHGCYDEV 304
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 51/268 (19%), Positives = 108/268 (40%), Gaps = 41/268 (15%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
VY M+ + + G +K L +M N + ++ Y++ ++AY HE +L M
Sbjct: 76 VYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARM 135
Query: 75 EAD---PNV-------------ALDW-------------------VIYATVGNGYGKVGL 99
+ + PN+ L+W + Y T+ + GL
Sbjct: 136 KREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGL 195
Query: 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV---LRIWELYKKAVKVLNNG 156
+++A M+ ++ + + YN ++ +YG+ + + V LR E A V+
Sbjct: 196 VEEA-GMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVV--A 252
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +I + + +A K+F++ + D + L++ Y ++G ++ L K
Sbjct: 253 YNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMK 312
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAV 244
+G E V ++ L + Q +++
Sbjct: 313 ERGTEPDVNTYNTLIQVFGQGGFFQESI 340
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G A V YN +++ Y + G + + +M+E G T D T+ T L AY
Sbjct: 238 LREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGK 297
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAML 107
++ + + T M+ +P+V Y T+ +G+ G +++ +
Sbjct: 298 HGCYDEVRLLFTDMKERGTEPDVN----TYNTLIQVFGQGGFFQESINLF 343
>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 44/310 (14%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY-----CTRLSAYADA 61
L R VVYN LK++ K + +K + L EM E G+ D +T+ C RL A
Sbjct: 170 LKFNREVVVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLA-- 227
Query: 62 SDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKS---EEQIKG 116
DK + E P+ L D V +T+ + YG+ G ++KAL++ ++ E ++
Sbjct: 228 ------DKAVEWFEKMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDA 281
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+A++ ++ +Y G D L ++E +K L VI ++L LD + A++
Sbjct: 282 ----TAFSTLIRIYKVAGNFDGCLNVYE----EMKALGVKPNLVIYNIL-LDAMGRAKR- 331
Query: 177 FEEWESQALCYDT----RIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
W+ + D P+F L+ Y R E A + K KG ++V +
Sbjct: 332 --PWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLY 389
Query: 228 YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ + KAVE + + ++ KP + ++ + F G + AEN +
Sbjct: 390 NSILAMCADLGHVDKAVEIFEDMKSS-----GIKPDSWTFSSMITIFSCCGKVSEAENTL 444
Query: 288 ELLNDKGFIP 297
+ + GF P
Sbjct: 445 NEMFEAGFQP 454
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 111/258 (43%), Gaps = 15/258 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM GL V ++M+ Y + GN EK SL D + T + Y
Sbjct: 234 FEKMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKV 293
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + +G + M+A PN+ VIY + + G+ K +KK + I
Sbjct: 294 AGNFDGCLNVYEEMKALGVKPNL----VIYNILLDAMGRA----KRPWQVKKFYQDIIDN 345
Query: 118 KVNSA---YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
++ + Y +L YG+ +D +I+ E+ +K + + Y ++++ L ++ A
Sbjct: 346 GLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKA 405
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+IFE+ +S + D+ + +I ++ G + +AEN +N G + ++ L
Sbjct: 406 VEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQC 465
Query: 234 YRQNSQIHKAVEAMKKVL 251
Y + +I V ++
Sbjct: 466 YGKAQRIDDVVNTFNRIF 483
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 10/249 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V Y +++ + NFEK L +EM ++G + D Y T +S ++ A
Sbjct: 484 GMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADA 543
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+L ++ + D V Y T+ G+ + + MLK+ EE G K ++ YN +
Sbjct: 544 SFVLAELK-KLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEA--GLKPDTITYNTL 600
Query: 127 LTLYGKYGK---KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+ K G V+R ++ K V Y VI++ + A +IF++ ++
Sbjct: 601 IAYASKNGDLKFAQKVMR--KMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAA 658
Query: 184 A-LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + +T I N LI+ C+N ++ A +L+ K+ G + ++ + G R + K
Sbjct: 659 SKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEK 718
Query: 243 AVEAMKKVL 251
E M +++
Sbjct: 719 VFEFMDRMI 727
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/334 (20%), Positives = 128/334 (38%), Gaps = 38/334 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M LG + NS+L + GNF +++ LM +M E I + T+ ++
Sbjct: 295 EMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFR 354
Query: 63 DHEGIDKILTMMEA-------DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
+ ++L M +V D VIY T+ +G KVG + L ++++ Q
Sbjct: 355 RVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKG 414
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
A YN ++ + K G+ + ++ E+ K+ V ++ + + + SA
Sbjct: 415 CAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAV 474
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
F E + + + D LI+ +C EKA L N G +Y L +G+
Sbjct: 475 NFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGF 534
Query: 235 RQNSQIHKA---VEAMKKV-----LAAYQTLV----------------------KWKPSV 264
Q ++ A + +KK+ Y TL+ KP
Sbjct: 535 SQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDT 594
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ + Y GD+ A+ + + G +PT
Sbjct: 595 ITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPT 628
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +++ LG+ TV YN+++ + +T F ++ ++ EMEE G+ D TY T ++ +
Sbjct: 547 LAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASK 606
Query: 61 ASDHEGIDKILT-MMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
D + K++ M++A P VA Y V N Y G ++A+ + K + K
Sbjct: 607 NGDLKFAQKVMRKMIKAGVVPTVA----TYGAVINAYCLNGNGNEAMEIFKDMKAASKVP 662
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN+++ K K + + E K N N I L+ D + EK+F
Sbjct: 663 PNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLR--DEKDLEKVF 720
Query: 178 E 178
E
Sbjct: 721 E 721
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 10/258 (3%)
Query: 1 MQKMRDL-GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
M++MR G A T+ YN ++ + K G EK L EM + G+ + T T +
Sbjct: 406 MERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMC 465
Query: 60 DASDHEGIDKILTMMEADPN-VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ +EA + D V Y + N + V +KA+ + E +K
Sbjct: 466 RTGRVS--SAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFN---EMLKSGC 520
Query: 119 VNSA--YNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
A Y +++ + + G+ D + EL K ++ Y +I + + +
Sbjct: 521 SPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFE 580
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ +E E L DT N LI +NG L+ A+ ++ G V ++ + Y
Sbjct: 581 MLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYC 640
Query: 236 QNSQIHKAVEAMKKVLAA 253
N ++A+E K + AA
Sbjct: 641 LNGNGNEAMEIFKDMKAA 658
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 109/238 (45%), Gaps = 16/238 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+N+M+ + +G+ E+ L M +N I D YTYC+ L++ AD E + ++ M+
Sbjct: 336 WNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIW 395
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE--QIKGAKVNSAYNVILTLYGKY 133
++ + + + + Y K G LD + EE QI ++ ++T Y +
Sbjct: 396 KSGSIGVS--LCNALMDAYAKCGELDAMRKLFDTWEESNQI-------SWTTLVTAYSQS 446
Query: 134 GKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ +D L ++ ++ + + + V++S L LE +++ D +
Sbjct: 447 SEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVE 506
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ LID+Y + G + A + E LK + V SW + +GY Q+ A+E +K+
Sbjct: 507 SVLIDMYAKCGSVRDAIKV--FESLKDPD--VISWTAMISGYAQHGMAKDALELFRKM 560
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 137/340 (40%), Gaps = 39/340 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM GL VVY++++ Y G E+ L+ M +G+ D + Y +S +
Sbjct: 372 LEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 431
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
A E L ++ + D V + GY K G + +A K +E + +
Sbjct: 432 AGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEA---AKYFDEMLDHGLMP 487
Query: 120 -NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKI 176
N Y V++ + K G + L I+ + A+ VL + I LLK ++ A K+
Sbjct: 488 NNPLYTVLINGHFKAGNLMEALSIFR-HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 546
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E + + L D + LI +C+ G +EKA L + LKG ++ + L G +
Sbjct: 547 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 606
Query: 237 NSQIHKAV--------EAMKKVLAAYQTLVKWKPSVESLAACLDYFKD------------ 276
+ I +A + ++ Y T++ E++A F +
Sbjct: 607 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV 666
Query: 277 ----------EGDIGGAENFIELLNDKGFIPTDLQDKLLD 306
EGD+ A N + KGF T + L+D
Sbjct: 667 YNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLID 706
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M L + V Y +M+ + + L+ +M +G+ + Y T + YA
Sbjct: 337 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 396
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++L M VA D Y + + K G +++A L E Q +G K +
Sbjct: 397 EGRIEEARRLLDGMSCS-GVAPDIFCYNAIISCLSKAGKMEEASTYLL--EIQGRGLKPD 453
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ + + Y K GK + + + E+ + N Y +I+ K +L A IF
Sbjct: 454 AVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR 513
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + D + + I +NG +++A + + K KG V ++ L +G+ +
Sbjct: 514 HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG 573
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ KA E L L P++ A +D GDI A + + +KG P
Sbjct: 574 EVEKAFE-----LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEP 627
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 112/282 (39%), Gaps = 37/282 (13%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + GL +V Y++M+ Y K+ N + SL HEM G+ + Y + D
Sbjct: 620 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD 679
Query: 64 HE-------------------------GIDKILTMMEADP--------NVALDWVIYATV 90
E G K + EA + D V Y TV
Sbjct: 680 MEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 739
Query: 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIWE-LYKK 148
+ + K G +++A + K+ +E + V++ Y ++ Y K G+ +V ++E + K
Sbjct: 740 IDWHCKAGKMEEANLLFKEMQE--RNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAK 797
Query: 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
VK Y VI + K D+L A K+ +E + + I + LI C+ L +A
Sbjct: 798 GVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEA 857
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
L++ G + + + L + + ++ +A + V
Sbjct: 858 SKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGV 899
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 10/296 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+ + YN ++ K G EK ++ M G + T+C + Y +
Sbjct: 270 MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHN 329
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
++L ME N+ V Y + NG L A +L+K G K N
Sbjct: 330 MGRALELLDEMEKR-NLVPSAVSYGAMINGLCHCKDLSLANKLLEKM--TFSGLKPNVVV 386
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y+ ++ Y G+ ++ R+ + + V Y +IS L K +E A E +
Sbjct: 387 YSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 446
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ L D I Y + G + +A + G + + L G+ + +
Sbjct: 447 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 506
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A+ + + A + P V++ +A + G + A L +KG +P
Sbjct: 507 EALSIFRHLHA-----LGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVP 557
>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 484
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 137/325 (42%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNTITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G + A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNPDAAADVLKAMIRLSVPTEAGHYGXLIXNFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KVGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAXKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 XKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 129/298 (43%), Gaps = 10/298 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M+++G V +NS++ Y K G ++++ L+ EM +G D TY ++ +
Sbjct: 212 SRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKF 271
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
E M+ + V + V ++T + + K GL+ +A+ + ++ +++G +N
Sbjct: 272 GRMETAYGYFAAMKRE-GVMANVVTFSTFVDAFCKEGLVREAMKLF--AQMRVRGMALNE 328
Query: 122 -AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++ K G+ DD + + E+ ++ V + Y ++ L K + AE +
Sbjct: 329 FTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRM 388
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E + + + LI + N EKA L++ K KG E+ + + L G
Sbjct: 389 MEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL---CN 445
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+HK EA K L +P+ +D G + A ++ + D GF P
Sbjct: 446 VHKLDEA--KSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQP 501
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 135/320 (42%), Gaps = 27/320 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR G V YN+++ + K G E M+ G+ + T+ S + D
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTF----STFVD 301
Query: 61 ASDHEGID----KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
A EG+ K+ M +AL+ Y + +G K G LD A+ +L + Q G
Sbjct: 302 AFCKEGLVREAMKLFAQMRVR-GMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ--G 358
Query: 117 AKVNSA-YNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172
+N Y V+ L K + +DVLR+ E K V+ Y +I + E
Sbjct: 359 VPLNVVTYTVLVDGLCKERKVAEAEDVLRMME--KAGVRANELLYTTLIHGHFMNKNSEK 416
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A + E +++ L D + LI C L++A++L+ G E + + +
Sbjct: 417 ALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMD 476
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
++ ++ +A+ ++K+L + ++P+V + A +D G I A + + D
Sbjct: 477 ACFKSGKVPEAIAMLQKILDS-----GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRD 531
Query: 293 KGFIP-----TDLQDKLLDN 307
G P T L D L N
Sbjct: 532 LGLDPNVQAYTALVDGLCKN 551
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 17/252 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V Y ++ K + + ++ ME+ G+ + Y T + + + E
Sbjct: 358 GVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKA 417
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVI 126
+L+ M+ + + LD +Y + G V LD+A ++L K +E G + N Y +
Sbjct: 418 LGLLSEMK-NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES--GLEPNYIIYTTM 474
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR-NVISSLLKLDDLESAEKI------FEE 179
+ K GK + + + + K+L++G++ NVI+ +D L A I F +
Sbjct: 475 MDACFKSGKVPEAIAMLQ------KILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNK 528
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
L + + L+D C+NG L +A L N KG + + L GY +
Sbjct: 529 MRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGN 588
Query: 240 IHKAVEAMKKVL 251
+H A K++
Sbjct: 589 LHDAFALKAKMI 600
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 110/256 (42%), Gaps = 11/256 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M G+ ++Y +++ ++ N EK L+ EM+ G+ D Y + +
Sbjct: 386 LRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCN 445
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +LT M+ +PN ++IY T+ + K G + +A+AML+K + G
Sbjct: 446 VHKLDEAKSLLTKMDESGLEPN----YIIYTTMMDACFKSGKVPEAIAMLQKILDS--GF 499
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ N Y ++ K G D+ + + ++ + Y ++ L K L A +
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F E + + D + L+D Y + G L A L G ++ + + +G+
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619
Query: 236 QNSQIHKAVEAMKKVL 251
+ + +A E +++
Sbjct: 620 NLNMMPEAREVFSEMI 635
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G++ VVY ++L Y K GN +L +M ++G+ D + Y +S + + +
Sbjct: 568 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEA 627
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
++ + M +A D +Y + + Y K+G L++A+++ + E +
Sbjct: 628 REVFSEMIGH-GIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSC 676
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 49/302 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR LG + VVYN+++ + K G + + L+ EM ++G++ D T+ R+SA
Sbjct: 114 LGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCS 173
Query: 61 ASDHEGIDKILTMMEADPNVAL---DWVIYATVGNGYGKVGLLDKALAMLKK---SEEQI 114
+ +I M+ D + L + + Y + G+ K G+L++A A+ +K SE +
Sbjct: 174 SGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLM 233
Query: 115 KGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+YN IW L L+++ L A+
Sbjct: 234 N----RESYN-----------------IWLL-----------------GLVRIGKLLEAQ 255
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ +E + + N ++D C+NG+L A L+ G ++ L GY
Sbjct: 256 LVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGY 315
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
++ +A +++++ P+ + L EG I AE ++ +N+KG
Sbjct: 316 CHTGKVSEANNVLREMMRD-----GCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKG 370
Query: 295 FI 296
++
Sbjct: 371 YV 372
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 124/292 (42%), Gaps = 20/292 (6%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+YN +L+ K G + + L +M +G++ + YT+ + D+ + ++ M
Sbjct: 23 LYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKM 82
Query: 75 E---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLY 130
+PN + + GY + G K L +L E + G N YN +++ +
Sbjct: 83 PEKGCEPN----EYSFGILVRGYCRAGFTSKGLELL--GEMRRLGFSPNKVVYNTLISSF 136
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW---ESQALC 186
K GK DD ++ E+ K + + IS+L + A +IF + E L
Sbjct: 137 CKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLP 196
Query: 187 YDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
I N ++ +C+ G+LE+A L K+ ++ +S+ G + ++ +A
Sbjct: 197 QPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQL 256
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+K+++ + +P+V S +D G + A + L+ G +P
Sbjct: 257 VLKEMVD-----MGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLP 303
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 17/242 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRL--SAY 58
M+ M G+ TV Y ++L Y TG + ++++ EM +G + + YT C L S +
Sbjct: 293 MRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYT-CNILLYSLW 351
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ E + + M E +D V V +G G LDKA+ ++ A
Sbjct: 352 KEGRISEAEELLQKMNEK--GYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAAL 409
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N + I G DD + KK + L + Y +IS L K + A+K F
Sbjct: 410 GNLGNSYI-------GLVDDS----DSRKKCMPDLIS-YSTIISGLCKAGRVGEAKKKFI 457
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + L D+ I + I +C+ G + A ++ + KG ++++ L G +
Sbjct: 458 EMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKN 517
Query: 239 QI 240
QI
Sbjct: 518 QI 519
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 22/224 (9%)
Query: 1 MQKMRDLGLARTTVV-YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY------CT 53
MQ LGL + ++ YN ML + K G E+ +L +M+ + +R +Y
Sbjct: 187 MQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLV 246
Query: 54 RLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL-DKALAMLKKSEE 112
R+ +A + + K + M +PNV Y V +G K G+L D + M +
Sbjct: 247 RIGKLLEA---QLVLKEMVDMGMEPNV----YSYNIVMDGLCKNGVLFDARMLMRLMTSS 299
Query: 113 QIKGAKVNSAYNVILTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD 169
+ V Y +L Y GK + ++VLR E+ + N ++ SL K
Sbjct: 300 GVLPDTV--TYTTLLHGYCHTGKVSEANNVLR--EMMRDGCSPNNYTCNILLYSLWKEGR 355
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ AE++ ++ + DT N +ID C NG L+KA +VN
Sbjct: 356 ISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVN 399
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 18/182 (9%)
Query: 47 DRYTYCTRLSAYADASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA 105
D +Y T +S A E K + MM N+ D IY + + K G + A
Sbjct: 432 DLISYSTIISGLCKAGRVGEAKKKFIEMM--GKNLQPDSAIYDVFIHSFCKEGKISSAFR 489
Query: 106 MLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW----ELYKKAVKVLNNGYRNVI 161
+LK E++ + + ++I+ L G K+ + I+ E+ ++ V + Y NV+
Sbjct: 490 VLKDMEKKGCNKTLQTYNSLIMGL----GSKNQIFEIYGLIDEMRERGVSPDVSIYNNVL 545
Query: 162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR-------NGLLEKAENLVNH 214
SSL + ++ A + +E + + + + LI +C+ + + E A N+ H
Sbjct: 546 SSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGH 605
Query: 215 EK 216
++
Sbjct: 606 KE 607
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 129/298 (43%), Gaps = 10/298 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+M+++G V +NS++ Y K G ++++ L+ EM +G D TY ++ +
Sbjct: 212 SRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKF 271
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
E M+ + V + V ++T + + K GL+ +A+ + ++ +++G +N
Sbjct: 272 GRMETAYGYFAAMKRE-GVMANVVTFSTFVDAFCKEGLVREAMKLF--AQMRVRGMALNE 328
Query: 122 -AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++ K G+ DD + + E+ ++ V + Y ++ L K + AE +
Sbjct: 329 FTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRM 388
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E + + + LI + N EKA L++ K KG E+ + + L G
Sbjct: 389 MEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL---CN 445
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+HK EA K L +P+ +D G + A ++ + D GF P
Sbjct: 446 VHKLDEA--KSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQP 501
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 135/319 (42%), Gaps = 25/319 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR G V YN+++ + K G E M+ G+ + T+ S + D
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTF----STFVD 301
Query: 61 ASDHEGIDKILTMMEADPNV---ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A EG+ + + A V AL+ Y + +G K G LD A+ +L + Q G
Sbjct: 302 AFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ--GV 359
Query: 118 KVNSA-YNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+N Y V+ L K + +DVLR+ E K V+ Y +I + E A
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVLRMME--KAGVRANELLYTTLIHGHFMNKNSEKA 417
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ E +++ L D + LI C L++A++L+ G E + + +
Sbjct: 418 LGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDA 477
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
++ ++ +A+ ++K+L + ++P+V + A +D G I A + + D
Sbjct: 478 CFKSGKVPEAIAMLQKILDS-----GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDL 532
Query: 294 GFIP-----TDLQDKLLDN 307
G P T L D L N
Sbjct: 533 GLDPNVQAYTALVDGLCKN 551
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 17/252 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V Y ++ K + + ++ ME+ G+ + Y T + + + E
Sbjct: 358 GVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKA 417
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVI 126
+L+ M+ + + LD +Y + G V LD+A ++L K +E G + N Y +
Sbjct: 418 LGLLSEMK-NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES--GLEPNYIIYTTM 474
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR-NVISSLLKLDDLESAEKI------FEE 179
+ K GK + + + + K+L++G++ NVI+ +D L A I F +
Sbjct: 475 MDACFKSGKVPEAIAMLQ------KILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNK 528
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
L + + L+D C+NG L +A L N KG + + L GY +
Sbjct: 529 MRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGN 588
Query: 240 IHKAVEAMKKVL 251
+H A K++
Sbjct: 589 LHDAFALKAKMI 600
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 110/256 (42%), Gaps = 11/256 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M G+ ++Y +++ ++ N EK L+ EM+ G+ D Y + +
Sbjct: 386 LRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCN 445
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +LT M+ +PN ++IY T+ + K G + +A+AML+K + G
Sbjct: 446 VHKLDEAKSLLTKMDESGLEPN----YIIYTTMMDACFKSGKVPEAIAMLQKILDS--GF 499
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ N Y ++ K G D+ + + ++ + Y ++ L K L A +
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F E + + D + L+D Y + G L A L G ++ + + +G+
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619
Query: 236 QNSQIHKAVEAMKKVL 251
+ + +A E +++
Sbjct: 620 NLNMMPEAREVFSEMI 635
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G++ VVY ++L Y K GN +L +M ++G+ D + Y +S + + +
Sbjct: 568 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEA 627
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
++ + M +A D +Y + + Y K+G L++A+++ + E +
Sbjct: 628 REVFSEMIGH-GIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSC 676
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 10/294 (3%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D G +N ++ + K G+ + E+ + G+ ++ T +S + D E
Sbjct: 241 DSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVE 300
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YN 124
++ +ME++ V D ++ + NG K G LD+ + E +G N +
Sbjct: 301 EGFRLKGVMESE-GVCPDVFTFSALINGLCKEGRLDEGSLLF--DEMCGRGLVPNGVTFT 357
Query: 125 VILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K GK D L+ +++ + V+ Y +I+ L K+ DL+ A ++ E +
Sbjct: 358 TLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTAS 417
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
L D LID C++G +E A + +G E+ ++ L +G + ++H A
Sbjct: 418 GLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDA 477
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +L+A +KP + +D F +GD+ ++ + G +P
Sbjct: 478 GRMLTDMLSA-----GFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVP 526
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 98/242 (40%), Gaps = 5/242 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+ +++++ K G ++ L EM G+ + T+ T +
Sbjct: 309 MESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGK 368
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNSA 122
+ K MM A V D V Y + NG KVG L +A ++ + + +K K+
Sbjct: 369 VDLALKNFQMMLAQ-GVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKIT-- 425
Query: 123 YNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+ ++ K G + L I + ++ +++ + + +IS L + + A ++ +
Sbjct: 426 FTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDML 485
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S D +ID +C+ G ++ L+ + G V ++ L G + Q+
Sbjct: 486 SAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMK 545
Query: 242 KA 243
A
Sbjct: 546 NA 547
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 133/310 (42%), Gaps = 8/310 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM++ G+ YN ++ K G + + EM E G++ + TY T +
Sbjct: 257 EKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCRE 316
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
++++ M++D + + + Y T+ +G+ V L KAL++ + + + +
Sbjct: 317 MKANEANEVMDQMKSD-GINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSL-V 374
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN++++ + K G ++ E+ ++ +K Y +I + + D++E A ++
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSM 434
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E L D + LI +C G + +A L K E + + + GY +
Sbjct: 435 EELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSS 494
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
++A+ +++ + P+V S ++ E AE +E + D G P+D
Sbjct: 495 YRALRLFREMEEK-----ELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDS 549
Query: 301 QDKLLDNVQN 310
L+ +N
Sbjct: 550 ILNLISRAKN 559
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 97/213 (45%), Gaps = 3/213 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M+ G+ + YN+++ + K SL +++ G++ TY +S +
Sbjct: 326 MDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCK 385
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G K++ ME + + V Y + + + + ++KA+ L+ S E++
Sbjct: 386 KGDTSGAGKVVKEME-ERGIKPSKVTYTILIDTFARSDNMEKAIQ-LRSSMEELGLTPDV 443
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+V++ + G+ ++ R+++ + +K + Y ++ K A ++F E
Sbjct: 444 HTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFRE 503
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
E + L + ++I+V C+ ++AE LV
Sbjct: 504 MEEKELPPNVASYRYMIEVLCKERKSKEAEGLV 536
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 139/327 (42%), Gaps = 19/327 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M D G + +N++L + +F + +E + + D Y++ + +
Sbjct: 117 FNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNE-SKIKVVLDVYSFGIVIKGCCE 175
Query: 61 ASDHE-GIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + E D ++ + E PNV VIY T+ +G K G ++KA + E K
Sbjct: 176 AGEIEKSFDLLVELREFGFSPNV----VIYTTLIDGCCKKGEIEKAKDLFF---EMGKFG 228
Query: 118 KVNSAYNVILTLYG--KYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAE 174
V + + + ++G K G K ++E ++ N + Y V++ L K + A
Sbjct: 229 LVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAF 288
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+F+E + + + N LI CR +A +++ K G ++ ++ L G+
Sbjct: 289 KVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGF 348
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
++ KA+ + + + PS+ + + F +GD GA ++ + ++G
Sbjct: 349 CGVRKLGKALSLCRDLKSR-----GLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403
Query: 295 FIPTDLQDKLLDNVQNGKSNLETLREL 321
P+ + +L + N+E +L
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQL 430
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 122/286 (42%), Gaps = 39/286 (13%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M+ GL V NS L K G ++ M G D ++YCT L YA
Sbjct: 359 REMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASE 418
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + M+++ +A + ++ + + Y K G++D A+ + + ++Q V +
Sbjct: 419 GCFADMIGLFNSMKSN-GIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVT 477
Query: 122 AYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y+ +++ + + G+ D + + ++ + ++ Y ++I L A+++ E
Sbjct: 478 -YSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEM 536
Query: 181 ESQ---------------ALCYDTRI----------------P-----NFLIDVYCRNGL 204
++ +LC D R+ P N LID YC G
Sbjct: 537 INKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGK 596
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
++KA +++ ++ G E + ++ L GY +N +I+ + +++
Sbjct: 597 MDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREM 642
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 3/220 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G TV Y+ M+ Y G ++ + EM++ G+ + T + L++
Sbjct: 323 LRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCK 382
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + M A + D Y T+ +GY G + + + A +
Sbjct: 383 HGRSKEAAEFFDSMTAKGHKP-DIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCH 441
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ +++ Y K G DD + I+ E+ ++ V Y VIS+ ++ L A + F +
Sbjct: 442 -VFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQ 500
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
++ + +T + + +I +C +G L KA+ LV+ KG
Sbjct: 501 MVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKG 540
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/295 (19%), Positives = 122/295 (41%), Gaps = 22/295 (7%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V Y++++ ++ G K SL HEM G+ D TY + A A + + +L
Sbjct: 266 VAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQ 325
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGK 132
M D D V Y+ + +GY +G L +A M + E + +G N N L K
Sbjct: 326 MTTD-GAQPDTVTYSCMIHGYATLGRLKEAAKMFR--EMKKRGLIPNIVTCNSFLASLCK 382
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE-------KIFEEWESQAL 185
+G+ + ++ + G++ I S L ++E +F +S +
Sbjct: 383 HGRSKEAAEFFD------SMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGI 436
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ + LI Y + G+++ A + + +G V ++ + + + + ++ A+E
Sbjct: 437 AANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAME 496
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+++A +P+ ++ + F G + A+ + + +KG D+
Sbjct: 497 KFNQMVAR-----GIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDI 546
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 7/224 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M +G+ V YN++L Y+K G +L EM+ G+ + TY L+
Sbjct: 604 LDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663
Query: 61 ASDHEGI-DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A K M+E+ V + IY + G + D+A+ + +K +
Sbjct: 664 AGRTVAARKKFHEMIESGTTVTVS--IYGIILGGLCRNNCADEAIILFQKLGTMNVKFSI 721
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
+I +Y K +K++ ++ + + N + Y +I +LLK +E A +F
Sbjct: 722 TILNTMINAMY-KVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFS 780
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
E + +R+ N +I + G + KA N ++ K+ G+ I
Sbjct: 781 SMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLS--KVDGKRI 822
>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 805
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 53/311 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ ++ G A V YN++L+++ K GN+ + ++ EME+ G D TY +YA
Sbjct: 277 FEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYAR 336
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A ++ K + M PN Y T+ YG G +D+ALA+ + ++
Sbjct: 337 AGFYQEAAKCIDTMIGKGLLPNT----FTYNTIMTAYGNAGKVDEALALFDRMKKNGFIP 392
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKI 176
N+ YN++L + GK + +L + ++ N N + ++ +ES ++
Sbjct: 393 YTNT-YNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRV 451
Query: 177 FEEWESQA--LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
E +S LC DT N LI Y R G
Sbjct: 452 LEGMKSCKVELCRDTY--NTLICAYGR------------------------------CGS 479
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
R N+ K + M T + P + + A L+ +GD A + + + +G
Sbjct: 480 RANA--FKMYDEM--------TAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEG 529
Query: 295 FIPTDLQDKLL 305
F P D+ LL
Sbjct: 530 FKPNDMSYSLL 540
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+++ G V+ NSML +Y K G + K + +E+ G++ D TY + + YA
Sbjct: 592 FQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAK 651
Query: 61 ASDHEGIDKILTMME--------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112
+++ +KIL + + D V Y TV NG+ K GL+ +A +L SE
Sbjct: 652 SNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVL--SEM 709
Query: 113 QIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE----LYKKAVKVLNNGYRNVISSLLKLD 168
G V TL G Y ++ E + ++ +K + YR V+ S +
Sbjct: 710 IADG--VAPCVITYHTLVGGYASREMFAEAREVVGYMIQRKLKPMELTYRRVVDSYCRAK 767
Query: 169 DLESAE 174
E A
Sbjct: 768 RYEDAR 773
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 140/360 (38%), Gaps = 40/360 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G T YN +L + K F + ++ EM +G T +R T+ T L+
Sbjct: 384 RMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRG 443
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK------------- 109
+ ++L M++ V L Y T+ YG+ G A M +
Sbjct: 444 MESYVTRVLEGMKSC-KVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTY 502
Query: 110 --------------------SEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW-ELYK 147
S+ + +G K N +Y+++L + K G + I E+Y+
Sbjct: 503 NALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQ 562
Query: 148 KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK 207
+ R ++ + K LE E+ F+E +++ D I N ++ +Y +NGL K
Sbjct: 563 GNIFPSWVILRTLVIANFKCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSK 622
Query: 208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV----LAAYQTLVKWKPS 263
A + + G + ++ L Y ++++ +A + + ++ Q + KP
Sbjct: 623 AMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPD 682
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYG 323
V S ++ F EG I A+ + + G P + L + RE+ G
Sbjct: 683 VVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVVG 742
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 43/283 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G A YN++L + + G++ S++ +M+ G + +Y L +A
Sbjct: 489 EMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGG 548
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK--GAKVN 120
+ GI+ I + N+ WVI T+ K + L ++++ +++K G K +
Sbjct: 549 NAAGIEAIEKEVYQG-NIFPSWVILRTLVIANFKC----RRLEGIERAFQEVKARGHKPD 603
Query: 121 SAY-NVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLLKLD 168
N +L++Y K G LY KA+++ + Y +++ K +
Sbjct: 604 LVILNSMLSIYAKNG----------LYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSN 653
Query: 169 DLESAEKIFEEWESQA---------LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ AEKI S L D N +I+ +C+ GL+++A+ +++ G
Sbjct: 654 EPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADG 713
Query: 220 REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
V +++ L GY +A E + Y K KP
Sbjct: 714 VAPCVITYHTLVGGYASREMFAEARE-----VVGYMIQRKLKP 751
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 137/340 (40%), Gaps = 39/340 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM GL VVY++++ Y G E+ L+ M +G+ D + Y +S +
Sbjct: 173 LEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 232
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
A E L ++ + D V + GY K G + +A K +E + +
Sbjct: 233 AGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEA---AKYFDEMLDHGLMP 288
Query: 120 -NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKI 176
N Y V++ + K G + L I+ + A+ VL + I LLK ++ A K+
Sbjct: 289 NNPLYTVLINGHFKAGNLMEALSIFR-HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 347
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E + + L D + LI +C+ G +EKA L + LKG ++ + L G +
Sbjct: 348 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 407
Query: 237 NSQIHKAV--------EAMKKVLAAYQTLVKWKPSVESLAACLDYFKD------------ 276
+ I +A + ++ Y T++ E++A F +
Sbjct: 408 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV 467
Query: 277 ----------EGDIGGAENFIELLNDKGFIPTDLQDKLLD 306
EGD+ A N + KGF T + L+D
Sbjct: 468 YNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLID 507
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 10/299 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M L + V Y +M+ + + L+ +M +G+ + Y T + YA
Sbjct: 138 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 197
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++L M VA D Y + + K G +++A L E Q +G K +
Sbjct: 198 EGRIEEARRLLDGMSCS-GVAPDIFCYNAIISCLSKAGKMEEASTYL--LEIQGRGLKPD 254
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ + + Y K GK + + + E+ + N Y +I+ K +L A IF
Sbjct: 255 AVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR 314
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + D + + I +NG +++A + + K KG V ++ L +G+ +
Sbjct: 315 HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG 374
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ KA E L L P++ A +D GDI A + + +KG P
Sbjct: 375 EVEKAFE-----LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEP 428
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 25/267 (9%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + GL +V Y++M+ Y K+ N + SL HEM G+ + Y + D
Sbjct: 421 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD 480
Query: 64 HE-GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKVNS 121
E ++ M++ L + T+ +GY K + +A + ++ +QI V
Sbjct: 481 MEKAMNLFREMLQKGFATTLS---FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVT- 536
Query: 122 AYNVILTLYGKYGKK-----------------DDVLRIWE-LYKKAVKVLNNGYRNVISS 163
Y ++ + K GK D V ++E + K VK Y VI +
Sbjct: 537 -YTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYA 595
Query: 164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
K D+L A K+ +E + + I + LI C+ L +A L++ G +
Sbjct: 596 HCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPS 655
Query: 224 VKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ + L + + ++ +A + V
Sbjct: 656 LAACSTLVRSFHEAGKMDEATRVFEGV 682
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 10/296 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+ + YN ++ K G EK ++ M G + T+C + Y +
Sbjct: 71 MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHN 130
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
++L ME N+ V Y + NG L A +L+K G K N
Sbjct: 131 MGRALELLDEMEKR-NLVPSAVSYGAMINGLCHCKDLSLANKLLEKM--TFSGLKPNVVV 187
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y+ ++ Y G+ ++ R+ + + V Y +IS L K +E A E +
Sbjct: 188 YSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 247
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ L D I Y + G + +A + G + + L G+ + +
Sbjct: 248 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 307
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A+ + + A + P V++ +A + G + A L +KG +P
Sbjct: 308 EALSIFRHLHA-----LGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVP 358
>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
Length = 647
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 131/292 (44%), Gaps = 23/292 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q ++D GL +NS+L + G+ E ++ EM G D YTY T + A
Sbjct: 84 QMLQD-GLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKC 142
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN- 120
+ E +++ MEA+ N+ + V Y+T+ +G+ K+ D+AL K E++K +
Sbjct: 143 GNMELATQVVLDMEAN-NIKPNVVTYSTLMDGFSKLEKYDEAL----KLREKMKSLGIQL 197
Query: 121 --SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN +L +Y K GK D++ + E + ++ Y ++I+ K L+ +
Sbjct: 198 DRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLV 257
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
++ +Q + + LID+Y + G+ A N+ K G + V + +N
Sbjct: 258 QDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKN 317
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF--------KDEGDIG 281
+ A+ + +++ + KP+V + +D F +D G++G
Sbjct: 318 GLVECALSLLDEMIK-----MGIKPNVVTYNTIIDAFGKSKILTEEDPGNMG 364
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 11/268 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR G V YN ++ G+ ++ +++ + +G D TY L +
Sbjct: 309 LDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCG 368
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ++++L M ++ N A D V + T+ + GL+D+A+ ++ E A +
Sbjct: 369 SERWKEVEELLAEMTSN-NCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIV 427
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+ IL G+ DD + + K K Y V+ L + E AE++ E
Sbjct: 428 T-YSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAE 486
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
D N ++ C+ GL+++A +V G + ++ + G S
Sbjct: 487 MLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESC 546
Query: 240 IHKAVEAM--------KKVLAAYQTLVK 259
I A+E + K + + TL+K
Sbjct: 547 IDDAMELLSDLQSCGCKPDIVTFNTLLK 574
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 116/290 (40%), Gaps = 25/290 (8%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
LG + T V YN+M+ Y + G E L++ M T+ L D
Sbjct: 213 LGPSATVVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALA 272
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNV 125
+ + P+V V Y+ + + K +A+A+L E + KG + + YNV
Sbjct: 273 VFDDMLHRGCSPSV----VTYSILLDATCKESGYRQAMALLD--EMRAKGCEPDIVTYNV 326
Query: 126 ILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ G D+ L I L K Y V+ SL + + E++ E S
Sbjct: 327 LINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNN 386
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N ++ C+ GL+++A +V+H G + ++ + G ++ AV
Sbjct: 387 CAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAV 446
Query: 245 EAMKKVLA--------AYQTLVK-------WKPSVESLAA--CLDYFKDE 277
E + ++ + AY T++K W+ + E +A C D DE
Sbjct: 447 ELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDE 496
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 103/255 (40%), Gaps = 7/255 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G + V YN ++ + L+ +++ G D T+ T L
Sbjct: 519 VEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCG 578
Query: 61 ASDHEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E ++++ MM + N D + + TV + GLL +A+ LK E G
Sbjct: 579 VDRWEDAEQLMANMMRS--NCPPDELTFNTVITSLCQKGLLTQAIETLKIMAEN--GCVP 634
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
NS+ Y++++ K GK L + L Y VIS+L K +E A +
Sbjct: 635 NSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLIT-YNTVISNLTKAGKMEEALDLLR 693
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
S LC DT L CR ++A ++ + G + + G+ ++
Sbjct: 694 VMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDR 753
Query: 239 QIHKAVEAMKKVLAA 253
+ A++ ++++
Sbjct: 754 RTDLAIDCFAHMVSS 768
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 134/319 (42%), Gaps = 32/319 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++ M +A + Y ++++ Y G+F+ L HEM+E G+ + Y +
Sbjct: 272 LKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCK 331
Query: 60 DASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKG 116
D EG M+ NVA IY + + K G + +A+ + K+ +E ++
Sbjct: 332 DGKRVEGYTVFENMISKGCKANVA----IYTALIDSNAKCGNMGEAMLLFKRMKKEGLEP 387
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEK 175
+V Y VI+ K G+ D+ L E K V V Y ++I L K ++ AE+
Sbjct: 388 DEVT--YGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAER 445
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
IF E + D+ N LID + G +++A L ++ G + V ++ L TG
Sbjct: 446 IFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLF 505
Query: 236 QNSQIHKAV--------EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ + +A+ + + AA++ L S CL G + A +
Sbjct: 506 REHRNEEALTLWDLMIDKGITPTAAAFRAL--------STGLCLS-----GKVARACKIL 552
Query: 288 ELLNDKGFIPTDLQDKLLD 306
+ + G IP D +++
Sbjct: 553 DEMAPMGVIPETAFDDMIN 571
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 112/249 (44%), Gaps = 3/249 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
K +++GL T NS++K + G E++ + M+ENGI ++Y ++ +
Sbjct: 167 FSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVN 226
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +++ +ME + + D V Y T+ GY +VG KA LK E +
Sbjct: 227 SKFIESAERVFEVME-NGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKI 285
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ +I Y + G D L ++ E+ +K +++ + Y VI L K +FE
Sbjct: 286 TYMTLIQACYAE-GDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFEN 344
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S+ + I LID + G + +A L K +G E ++ + ++ +
Sbjct: 345 MISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGR 404
Query: 240 IHKAVEAMK 248
+ +A+E M+
Sbjct: 405 LDEALEYME 413
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 116/275 (42%), Gaps = 13/275 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ GL V Y ++ K+G ++ M G+ + Y + +
Sbjct: 377 FKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGK 436
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA-KV 119
+ + ++I M D Y + + K G +D+ALA+ K+ E + G +
Sbjct: 437 SGRVDEAERIFYEM-VKKGCPPDSYCYNALIDALAKCGKIDEALALSKRME--VDGCDQT 493
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y +++T + + ++ L +W+L K + +R + + L + A KI +
Sbjct: 494 VYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILD 553
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +T + +I++ C+ G +++A L + +GREI + L R+
Sbjct: 554 EMAPMGVIPETAFDD-MINILCKAGRIKEACKLADGIVDRGREIPGRVRTVLINALRKAG 612
Query: 239 QIHKAVEAMK-KVLAAYQTL------VKWKPSVES 266
A++ M+ K+ Y + VK++ VES
Sbjct: 613 NADLALKLMRSKIGIGYDRMGSVKRRVKFRILVES 647
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 9/246 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M++ G+ + YN ++ + E + + ME I D TY T + Y +
Sbjct: 203 RRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEV 262
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ L ME NVA D + Y T+ G D L + + +E KG ++
Sbjct: 263 GKTRKAFEKLKAMELR-NVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDE--KGLEIPP 319
Query: 122 -AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y++++ K GK+ + ++E + K K Y +I S K ++ A +F+
Sbjct: 320 HVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKR 379
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQN 237
+ + L D +++ C++G L++A L E G+ + V + +Y L G ++
Sbjct: 380 MKKEGLEPDEVTYGVIVNSLCKSGRLDEA--LEYMEFCSGKGVAVNAMFYSSLIDGLGKS 437
Query: 238 SQIHKA 243
++ +A
Sbjct: 438 GRVDEA 443
>gi|156070779|gb|ABU45192.1| unknown [Petunia integrifolia subsp. inflata]
Length = 406
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 95/197 (48%), Gaps = 5/197 (2%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
+S+++ Y G F+ + +M++ G ++ LSA + ++ + ++ M
Sbjct: 104 SSIIRSYGIAGMFDHALKIYDQMDDLGTPRSAISFNVLLSACVNTKQYDRVRQLFDEMPV 163
Query: 77 DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGK 135
D V Y + Y ++GL +KA+ LK+ EE KG ++ + + +L + K G
Sbjct: 164 KYGFLPDKVSYGILIRSYCEMGLPEKAMERLKEMEE--KGVEITAITFTTLLHAFYKKGM 221
Query: 136 KDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
D+ ++W E+ K + G NV ++ D E + + EE + L DT N+
Sbjct: 222 GDEAEKVWNEMVNKGCGP-DVGAYNVKIRNIQGGDPEGVKALIEEMNNAGLKPDTISYNY 280
Query: 195 LIDVYCRNGLLEKAENL 211
L+ YC NGL+++A+ +
Sbjct: 281 LMTCYCENGLMDEAQKV 297
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 10/178 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ T + + ++L +YK G ++ + + +EM G D Y ++
Sbjct: 194 LKEMEEKGVEITAITFTTLLHAFYKKGMGDEAEKVWNEMVNKGCGPDVGAYNVKIRN-IQ 252
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D EG+ ++ M + + D + Y + Y + GL+D+A + + E G N
Sbjct: 253 GGDPEGVKALIEEMN-NAGLKPDTISYNYLMTCYCENGLMDEAQKVYEDLETN--GCNPN 309
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN----NGYRNVISSLLKLDDLESAE 174
+A L LY KK ++++K++V+V N + ++ L+K + L+ A+
Sbjct: 310 AATFRSLILY--LCKKGRFETGYKVFKESVRVNKMPDFNTLKCLVEGLVKREKLKDAK 365
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 28/218 (12%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G V Y +++ Y + G EK + EMEE G+ T+ T L A+ +
Sbjct: 166 GFLPDKVSYGILIRSYCEMGLPEKAMERLKEMEEKGVEITAITFTTLLHAFYKKGMGDEA 225
Query: 68 DKILTMM---EADPNVALDWVIYATV--GNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+K+ M P+V V + G+ G L++ E G K ++
Sbjct: 226 EKVWNEMVNKGCGPDVGAYNVKIRNIQGGDPEGVKALIE---------EMNNAGLKPDTI 276
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+YN ++T Y + G D+ +++E L +R++I L K E+ K+F+E
Sbjct: 277 SYNYLMTCYCENGLMDEAQKVYEDLETNGCNPNAATFRSLILYLCKKGRFETGYKVFKES 336
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218
++P+F N L E LV EKLK
Sbjct: 337 VRV-----NKMPDF-------NTLKCLVEGLVKREKLK 362
>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 604
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 25/241 (10%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
R V YNSML Y G+ L EM E D T+ T L+ YA G D
Sbjct: 183 RDLVSYNSMLSSYAAVGDMAGAGRLFDEMPER----DVVTWNTMLAGYARG----GADMA 234
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
D D V + ++ +GY + G + A AM + +++NV+L LY
Sbjct: 235 SARAVFDAMPERDVVSWNSMLDGYAQAGDVVMAWAMFDGMPR-----RSAASWNVVLALY 289
Query: 131 GKYGKKDDVLRIWE-LYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIF----EEWESQA 184
+ + LR+++ + V V N + +V+++ L DLE + + E W+
Sbjct: 290 ARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERWDR-- 347
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
L D + L+ +Y + G +E A + + E V SW + GY + Q KA+
Sbjct: 348 LVPDVLLLTALLTMYAKCGAMETAREIFDSMS----ERSVPSWNSMIIGYGLHGQSEKAL 403
Query: 245 E 245
E
Sbjct: 404 E 404
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 118/290 (40%), Gaps = 41/290 (14%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL T V +N+++ Y K+GN ++ L M EN + D +TY ++ +
Sbjct: 255 GLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDA 314
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+K+ M D + + V + T+ NG+ G D + + Y +L
Sbjct: 315 NKLFLEM-CDRGLVPNDVTFTTLINGHCVTGRADLGMEI----------------YQQML 357
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+ G K DV+ Y +I+ L K+ DL A+K+ E + L
Sbjct: 358 ----RKGVKPDVIT---------------YNTLINGLCKVGDLREAKKLVIEMTQRGLKP 398
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D LID C+ G LE A + +G E+ ++ L +G+ + Q+ +A +
Sbjct: 399 DKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTL 458
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+++L A KP + + F +GD+ ++ + G +P
Sbjct: 459 REMLEA-----GIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVP 503
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 23/274 (8%)
Query: 2 QKMRDLGLAR----TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
+++ D LAR + + YN+++ Y K GN EK + M+ + I T+ T L
Sbjct: 607 EQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKG 666
Query: 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A E + +LT M+ D D ++ + +GY D AL + + + + G
Sbjct: 667 LFKAGMVEDAENVLTEMK-DQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDS--GL 723
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW--ELYKKAV--KVLNNGYRNVISSLLKLDDLES 172
K+N+ +++L K G+ + I E+ K V +VL Y +I + DL
Sbjct: 724 KMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVL---YNTMIDGYSRKGDLVG 780
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A + E Q + D N LI +C G +E AE VN KLKG V+++ L
Sbjct: 781 ARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIG 840
Query: 233 GYRQNSQIHKAVEAMKKV--------LAAYQTLV 258
GY + + K + +K++ + +Y TL+
Sbjct: 841 GYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLI 874
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 105/260 (40%), Gaps = 11/260 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V+YN+M+ Y + G+ + ME+ G+ D Y + + + D E
Sbjct: 757 GLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENA 816
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
++ + M+ V+ Y + GYG+ DK +LK+ E+ V S Y ++
Sbjct: 817 EQEVNKMKLK-GVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVS-YGTLI 874
Query: 128 TLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
K K + + ++ + V Y +I +E A + EE + +
Sbjct: 875 NCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIE 934
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV-- 244
+ N LID NG L +AE+++ KG + V ++ L +GYR + + +
Sbjct: 935 LNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIAL 994
Query: 245 ------EAMKKVLAAYQTLV 258
+K L Y L+
Sbjct: 995 YEEMKTSGIKPTLKTYHLLI 1014
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 11/209 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM+ G++ + YN ++ Y + F+K L+ EME+NG + +Y T ++
Sbjct: 820 VNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCK 879
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KGAKV 119
S + ME D V+ + IY + +G G ++ A + SEE KG ++
Sbjct: 880 GSKLLEAQIVKRDME-DRGVSPNVRIYNMLIDGCCSKGKIEDA---FRFSEEMFKKGIEL 935
Query: 120 N-SAYNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N YN + L++ GK + +D+L E+ +K +K Y ++IS +++
Sbjct: 936 NLVTYNTLIDGLSMNGKLAEAEDML--LEISRKGLKPDVFTYNSLISGYRFAGNVQRCIA 993
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGL 204
++EE ++ + + + LI + + G+
Sbjct: 994 LYEEMKTSGIKPTLKTYHLLISLCTKEGI 1022
Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y I + +KL D+ ++F + + I N LID C+ ++ AE L +
Sbjct: 555 YGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEML 614
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
+ + ++ L GY ++ K+ + +++ A +PS+ + L
Sbjct: 615 ARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKAD-----NIEPSLITFNTLLKGLFK 669
Query: 277 EGDIGGAENFIELLNDKGFIP 297
G + AEN + + D+GF+P
Sbjct: 670 AGMVEDAENVLTEMKDQGFVP 690
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 119/301 (39%), Gaps = 53/301 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM +G T V YN+++ Y GN L+ M+ENG D +TY +S ++
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490
Query: 61 ASDHEGIDKILT-MMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
E M+E +PN V Y + +G+ K G +D AL++LK+ EE
Sbjct: 491 WGKLESASFYFQEMVECGLNPNP----VSYTALIDGHSKDGKVDIALSLLKRMEEMGCNP 546
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
V S Y VI+ L K + AEKI
Sbjct: 547 NVES-----------------------------------YNAVINGLSKENRFSEAEKIC 571
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN-HEKLKGREIHVKSWYYLATGYRQ 236
++ Q L + LID CRNG + A + + EK K L Y
Sbjct: 572 DKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKC----------LPNLYTY 621
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+S I+ + K A + + +P++++ + + +G AE ++ + ++GF
Sbjct: 622 SSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFC 681
Query: 297 P 297
P
Sbjct: 682 P 682
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 123/302 (40%), Gaps = 20/302 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M + GL V Y +++ + K G + SL+ MEE G + +Y ++ +
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSK 560
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +KI M PNV + Y T+ +G + G A + E K
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNV----ITYTTLIDGLCRNGRTQFAFKIFHDME---KRK 613
Query: 118 KVNSAYNVILTLYG--KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ + Y +YG + GK D+ R+ E+ + + Y ++S L + AE+
Sbjct: 614 CLPNLYTYSSLIYGLCQEGKADEAERMSEI---GCEPTLDTYSTLVSGLCRKGRFYEAEQ 670
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ ++ + + C D I L+ +C+N ++ A + + + KG ++H+ + L
Sbjct: 671 LVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALC 730
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ Q+ +A +L +W +D EG++ + ++ K F
Sbjct: 731 KAGQVEEAQALFDNMLEK-----EWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNF 785
Query: 296 IP 297
P
Sbjct: 786 TP 787
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 123/300 (41%), Gaps = 16/300 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G +V Y++++ G ++ ++ EM E GI YTY ++A
Sbjct: 258 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 317
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E +++ M+ PNV Y + +G ++G L+ A+ + K ++ G
Sbjct: 318 HEEEAIELVARMKKRGCRPNVQ----TYTALISGLSRLGKLEVAIGLYHKMLKE--GLVP 371
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIF 177
N+ YN ++ G+ L+I+ + + N Y +I L D+E A +F
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLF 431
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E+ N LI+ Y G + A L++ K G E ++ L +G+ +
Sbjct: 432 EKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKW 491
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ A ++++ P+ S A +D +G + A + ++ + + G P
Sbjct: 492 GKLESASFYFQEMVEC-----GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNP 546
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 108/258 (41%), Gaps = 15/258 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ G Y +++ + G E L H+M + G+ + TY ++
Sbjct: 326 VARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCV 385
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
KI ME ++A + Y + G G ++KA+ + +K + V
Sbjct: 386 GGRFSTALKIFHWMEGHGSLA-NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 444
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
+ YN ++ Y G ++ R+ +L K+ NG Y ++S K LESA
Sbjct: 445 T-YNTLINGYLTKGNVNNAARLLDLMKE------NGCEPDEWTYNELVSGFSKWGKLESA 497
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
F+E L + LID + ++G ++ A +L+ + G +V+S+ + G
Sbjct: 498 SFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVING 557
Query: 234 YRQNSQIHKAVEAMKKVL 251
+ ++ +A + K++
Sbjct: 558 LSKENRFSEAEKICDKMV 575
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/366 (19%), Positives = 145/366 (39%), Gaps = 59/366 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR G V YN ++ + G + L++ + G D +Y T L
Sbjct: 200 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCA 259
Query: 61 ASDHEGIDKILT-MMEAD--PN-VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ + ++++ MME + PN V D +I + + G++++A+ +L++ E +
Sbjct: 260 SKRWDDVEELFAEMMEKNCMPNEVTFDMLI-----RFFCRGGMVERAIQVLQQMTEH-EC 313
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----------GYRNVISSLL 165
A + N+++ K G+ DD A K LNN Y V+ L
Sbjct: 314 ATNTTLCNIVINSICKQGRVDD----------AFKFLNNMGSYGCNPDTISYTTVLKGLC 363
Query: 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225
+ + A+++ +E + N I + C+ GL+E+A L+ + G + V
Sbjct: 364 RAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVV 423
Query: 226 SWYYLATGYRQNSQIHKAVEAMKKVLA-----AYQTLVK--------------------- 259
++ L G+ I A+E + + Y TL+
Sbjct: 424 TYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHR 483
Query: 260 -WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DKLLDNVQNGKSNLET 317
P+V + +++F +G + A +E + + G P + + L D + S+ +
Sbjct: 484 DCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDA 543
Query: 318 LRELYG 323
L L+G
Sbjct: 544 LELLHG 549
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 126/301 (41%), Gaps = 17/301 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+K R R+ N++L K G + +M GI +TY +
Sbjct: 211 MRKFRVFPKPRSC---NALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCK 267
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E + T M+ + D V Y ++ +G+GK+GLLD+ + + EQ+K A +
Sbjct: 268 EGDLEMARSLFTQMK-EAGFTPDIVTYNSLIDGHGKLGLLDECICIF----EQMKDADCD 322
Query: 121 S---AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN ++ + K+ + + E+ +K Y I + K L+ A K
Sbjct: 323 PDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKF 382
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F + AL + LID C+ G L +A LV G +++V ++ L G +
Sbjct: 383 FVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCE 442
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ +A E + +L A P+ E+ A + F ++ A++ ++ + +K
Sbjct: 443 EGRMKEAEEVFRAMLNA-----GVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 497
Query: 297 P 297
P
Sbjct: 498 P 498
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 113/258 (43%), Gaps = 15/258 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++M+D + YN+++ + K K +HEM+ NG+ + TY T + A+
Sbjct: 313 FEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCK 372
Query: 60 DASDHEGIDKILTM--MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ E I + M + PN Y ++ + K G L +AL ++++ + G
Sbjct: 373 EGMLQEAIKFFVDMRRVALTPN----EFTYTSLIDANCKAGNLAEALKLVEEILQA--GI 426
Query: 118 KVNSA-YNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
K+N Y + L G+ + ++V R + V Y ++ +K ++E A
Sbjct: 427 KLNVVTYTALLDGLCEEGRMKEAEEVFR--AMLNAGVAPNQETYTALVHGFIKAKEMEYA 484
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ I +E + + + D + ++ C LE+A+ L+ K G + + L
Sbjct: 485 KDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDA 544
Query: 234 YRQNSQIHKAVEAMKKVL 251
Y ++ Q +A+ ++++L
Sbjct: 545 YFKSGQATEALTLLEEML 562
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 15/250 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M + G+A Y +++ + K E ++ EM+E I D Y T L +
Sbjct: 453 FRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCN 512
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S E K+L + + + VIY T+ + Y K G +AL +L EE + +
Sbjct: 513 ESRLEE-AKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLL---EEMLDLGLIA 568
Query: 121 S--AYNVILTLYGKYGKKDDVL----RIWEL-YKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ Y ++ K G + + R+ E+ + V V Y ++ L K + E A
Sbjct: 569 TEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAV----YTALVDGLCKNNCFEVA 624
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+K+F+E + + D LID ++G L++A NL + G E+ + ++ L G
Sbjct: 625 KKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWG 684
Query: 234 YRQNSQIHKA 243
+ Q+ KA
Sbjct: 685 LSHSGQVQKA 694
>gi|297847016|ref|XP_002891389.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337231|gb|EFH67648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 371
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 135 KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
K+D + +W YKK K++++ YR IS LLKLDD++ AEKI+++W+ D +P
Sbjct: 237 KRDYLDPLWNKYKKEGKLMDDEYRIRISYLLKLDDVQGAEKIYQKWQPTGPKLDMSVPGL 296
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
LI + G K E +VN ++K +H+ +
Sbjct: 297 LISRFRAEGNESKVEEMVNSIRMKRIVMHLAT 328
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KMRDLG +++M+ LY K + + L +EM EN + DR LS +D
Sbjct: 176 FEKMRDLGFLSKPSPFDTMISLYRKLNKRDMVKKLKYEMMENNVKIDRPIELNVLSIVSD 235
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 123/256 (48%), Gaps = 12/256 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLS--AYAD 60
K G+ +YNS++ + K G+ EK L EM NGI + Y T ++ Y
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCK 710
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + K+ M ++ D IY + +G GK G L+KAL++ +++++ G+
Sbjct: 711 SGNLTEAFKLFDEM-ISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSL-- 767
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV--KVLNN--GYRNVISSLLKLDDLESAEKI 176
SA+N ++ + K+GK V+ EL+ V K+ N Y +I + K + +E AE++
Sbjct: 768 SAFNSLIDSFCKHGK---VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQL 824
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F + E++ + +T L+ Y + G K +L + +G ++ +A+ Y +
Sbjct: 825 FLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCK 884
Query: 237 NSQIHKAVEAMKKVLA 252
+ +A++ + K L
Sbjct: 885 EGKSLEALKLLNKSLV 900
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 40/248 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ L + Y+ ++ + + +K + ++ +M NG+ + + Y T + AY
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQ 498
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S +E ++L +M A+ V D Y + G + +++A +L E KG K N
Sbjct: 499 ESRYEMAIELLKIMIAN-GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGE--KGIKPN 555
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN------------------------ 155
+ Y + LY K G+ R ++ + V NN
Sbjct: 556 AHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFK 615
Query: 156 ------------GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
Y +I SL K + A +F ++ + D + N LI +C+ G
Sbjct: 616 CMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEG 675
Query: 204 LLEKAENL 211
+EKA L
Sbjct: 676 DIEKASQL 683
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 122/324 (37%), Gaps = 39/324 (12%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V YN+M+ K G K SL +EM GI D +TY + Y + D
Sbjct: 376 GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKA 435
Query: 68 DKILTMMEA------------------------DPNVALDWVIYATVGNGYGKVGLLDKA 103
++L M+A N LD +I V G L KA
Sbjct: 436 CELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKA 495
Query: 104 LAMLKKSEEQIKGAKVNSA---------YNVILTLYGKYGKKDDV-LRIWELYKKAVKVL 153
+ E I+ K+ A YN ++ + K ++ + + ++ +K +K
Sbjct: 496 YVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPN 555
Query: 154 NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ Y I+ K +++ AE+ F++ S + + I LI +C G +A +
Sbjct: 556 AHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFK 615
Query: 214 HEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273
KG ++++ + +N K EAM L +T V P V + +
Sbjct: 616 CMLEKGLIPDIRAYSAIIHSLSKNG---KTKEAMGVFLKFLKTGV--VPDVFLYNSLISG 670
Query: 274 FKDEGDIGGAENFIELLNDKGFIP 297
F EGDI A + + G P
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINP 694
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 53/299 (17%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T + N++++ K + M E I D YTY + A+ D
Sbjct: 202 GFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKG 261
Query: 68 DKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKAL----AMLKKS----------- 110
+L+ ME + PN+ Y G + G +D+AL M++K
Sbjct: 262 KMVLSEMEKECKPNL----FTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLL 317
Query: 111 ------EEQIKGAKV-------------NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAV 150
+++ K AK+ Y ++ + K G ++ LRI E+ + +
Sbjct: 318 VDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGL 377
Query: 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
K+ Y +I + K ++ A +F E + DT N LID Y ++ + KA
Sbjct: 378 KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACE 437
Query: 211 LVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEAMKKVLA--------AYQTLVK 259
L+ ++K R++ + Y L +G +S + KA E + +++ Y TL+K
Sbjct: 438 LL--AEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIK 494
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 119/252 (47%), Gaps = 13/252 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+++ D L R TV +NSM+ Y + G F + L M+E GI +T + L+A A
Sbjct: 183 RRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACL 242
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ I + + N AL+ ++ + + Y K G +DKAL + K + + KG S
Sbjct: 243 GALRQGEWIHDYIVKN-NFALNSIVITAIIDMYSKCGSIDKALQVFKSAPK--KGL---S 296
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+N ++ G+ ++ +R++ +L +K + + V+++ ++ A+ F
Sbjct: 297 CWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYF-LL 355
Query: 181 ESQALCYDTRIPNF--LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
S+ + I ++ ++DV R GLLE+AE L+ + I W L + R+
Sbjct: 356 MSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAI---IWGSLLSSCREYG 412
Query: 239 QIHKAVEAMKKV 250
I A +A K+V
Sbjct: 413 NIEMAKQAAKRV 424
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/291 (19%), Positives = 135/291 (46%), Gaps = 17/291 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + G++ YN++L + G +E+ + ++ EM++ G + TY + L AYA+
Sbjct: 484 KRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANG 543
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL-DKALAMLKKSEEQIKGAKVN 120
+ E ++ + + + + V+ T+ KV LL + A L+ + I
Sbjct: 544 REVERMNALAEEIYSG-TIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTT 602
Query: 121 SAYNVILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
S N +L++YG+ K +++L +Y+ + + Y +++ + ++ +E+IF
Sbjct: 603 S--NAMLSIYGRKKMVPKANEILNF--MYESGLTLSLTSYNSLMYMYSRTENFHKSEQIF 658
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + + D N +I YCRN ++++A+ ++ K+ V ++ Y +
Sbjct: 659 REILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAAD 718
Query: 238 SQIHKAVEAMKKVLA--------AYQTLVKWKPSVESLAACLDYFKDEGDI 280
S +A++ ++ ++ Y ++V W ++ + ++ GD+
Sbjct: 719 SMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQNLGDL 769
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 7/252 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
KM+++G T + YN++L +Y K G + K+ +L+ +M+ +G+ D TY T +S
Sbjct: 204 KMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAG 263
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
S +E + ++ D V Y + + YGK +A+ +LK+ E V +
Sbjct: 264 SLYEEALDLFEEIKV-AGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVT 322
Query: 122 AYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN +++ Y + G +D L + ++ K +K Y ++S + E A ++FEE
Sbjct: 323 -YNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEM 381
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN--- 237
+ N LI +Y G E+ + K+ + +W L + QN
Sbjct: 382 RKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD 441
Query: 238 SQIHKAVEAMKK 249
S++ E MK+
Sbjct: 442 SEVSGVFEEMKR 453
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 15/249 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + V YNS++ Y + G E L +M + GI D YTY T LS + +
Sbjct: 308 LKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVN 367
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A E ++ M PN+ + + YG G ++ + + K +IK
Sbjct: 368 AGKEELAMEVFEEMRKVGCKPNIC----TFNALIKMYGDRGKFEEMVKVFK----EIKVC 419
Query: 118 KVNS---AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESA 173
K + +N +L ++G+ G +V ++E K++ + + +IS+ + + A
Sbjct: 420 KCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQA 479
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++ + D N ++ R GL E++E ++ K G + + ++ L
Sbjct: 480 MAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHA 539
Query: 234 YRQNSQIHK 242
Y ++ +
Sbjct: 540 YANGREVER 548
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 25/264 (9%)
Query: 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME---ADPNVA 81
KTG + SL+H +E +G D Y Y + ++AYA+ + K+ M+ +P +
Sbjct: 156 KTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTL- 214
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLR 141
+ Y + N YGK+G+ + L + + A YN +++ ++ L
Sbjct: 215 ---ITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALD 271
Query: 142 IWELYKKAVKVLNNGYRNVISSLLKLDDL-------ESAEKIFEEWESQALCYDTRIPNF 194
++E K A G+R + L D+ + A ++ ++ ES + N
Sbjct: 272 LFEEIKVA------GFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNS 325
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
L+ Y R GLLE A L KG + V ++ L +G+ + A+E +++
Sbjct: 326 LVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRK-- 383
Query: 255 QTLVKWKPSVESLAACLDYFKDEG 278
V KP++ + A + + D G
Sbjct: 384 ---VGCKPNICTFNALIKMYGDRG 404
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 135/321 (42%), Gaps = 23/321 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q M+ GLA YN+++ +E+ L E++ G D TY L Y
Sbjct: 238 VQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGK 297
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + ++L ME++ P+V V Y ++ + Y + GLL+ AL + +K + KG
Sbjct: 298 SRRPKEAMEVLKQMESNSFRPSV----VTYNSLVSAYVRGGLLEDALVLKRKMVD--KGI 351
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL----DDLES 172
K + Y +L+ + GK++ + ++E +K N N +L+K+ E
Sbjct: 352 KPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFN---ALIKMYGDRGKFEE 408
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
K+F+E + D N L+ V+ +NG+ + + K ++ L +
Sbjct: 409 MVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLIS 468
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
Y + +A+ A K++L A P + + A L G +E + + D
Sbjct: 469 AYGRCGSFDQAMAAYKRMLEA-----GVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKD 523
Query: 293 KGFIPTDLQ-DKLLDNVQNGK 312
G P ++ LL NG+
Sbjct: 524 GGCKPNEVTYSSLLHAYANGR 544
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 137/342 (40%), Gaps = 46/342 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G + V YN+++K Y K GNF + + EM +G+T TY + + +
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Query: 61 ASDHEGIDKILTMMEA----------------------------------DPNVALDWVI 86
A + + L M D + V
Sbjct: 358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVT 417
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI-WEL 145
Y + NG+ G ++ A+A+L+ +E+ V S Y+ +L+ + + D+ LR+ E+
Sbjct: 418 YNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVS-YSTVLSGFCRSYDVDEALRVKREM 476
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+K +K Y ++I + + A ++EE L D LI+ YC G L
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL--------AAYQTL 257
EKA L N KG V ++ L G + S+ +A + K+ Y TL
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Query: 258 VKWKPSVE--SLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ ++E S+ + + F +G + A+ E + K P
Sbjct: 597 IENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKP 638
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 123/302 (40%), Gaps = 16/302 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M + ++ YN +++ + GN + +L +ME G + TY T + Y
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ K+L M +PN+ + Y V NG + G + + +L +E +G
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNL----ISYNVVINGLCREGRMKEVSFVL--TEMNRRGY 306
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
++ YN ++ Y K G L + E+ + + Y ++I S+ K ++ A +
Sbjct: 307 SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAME 366
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
++ + LC + R L+D + + G + +A ++ G V ++ L G+
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHC 426
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ A+ ++ + P V S + L F D+ A + +KG
Sbjct: 427 VTGKMEDAIAVLEDMKEK-----GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 296 IP 297
P
Sbjct: 482 KP 483
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 37/281 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G + + V YN+++ + TG E +++ +M+E G++ D +Y T LS +
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GA 117
+ D +D+ L + + + D + Y+++ G+ + +A + EE ++ G
Sbjct: 463 SYD---VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY---EEMLRVGL 516
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ Y ++ Y G + L++ E+ +K V Y +I+ L K A++
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKR 576
Query: 176 I-----FEEWESQALCYDTRIPNF----------LIDVYCRNGLLEKAENLVNHEKLKGR 220
+ +EE + Y T I N LI +C G++ +A+ + E + G+
Sbjct: 577 LLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVF--ESMLGK 634
Query: 221 EIHVKSWYYLATGYRQNSQIHKAVEA--MKKVLAAYQTLVK 259
+ G N IH A ++K Y+ +VK
Sbjct: 635 N-------HKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVK 668
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 60/326 (18%), Positives = 138/326 (42%), Gaps = 16/326 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++ M GL + YN ++ + G +++ ++ EM G + D TY T + Y
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322
Query: 60 DASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + H+ + M+ P+V + Y ++ + K G +++A+ L + +++G
Sbjct: 323 EGNFHQALVMHAEMLRHGLTPSV----ITYTSLIHSMCKAGNMNRAMEFL--DQMRVRGL 376
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N Y ++ + + G ++ R+ E+ Y +I+ +E A
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E+ + + L D + ++ +CR+ +++A + KG + ++ L G+
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + +A + +++L V P + A ++ + EGD+ A + +KG
Sbjct: 497 EQRRTKEACDLYEEMLR-----VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Query: 296 IPTDLQDKLLDNVQNGKSNLETLREL 321
+P + +L N N +S + L
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRL 577
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 126/276 (45%), Gaps = 16/276 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++ G+ + V Y+ ++ + K + E D E +E T + Y + A+
Sbjct: 347 VRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQ 406
Query: 61 ASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A + + ++ ME + + +D IY T+ +GY +G +K L + + +E V
Sbjct: 407 ACNMTQAEALVREMEEEGIDAPID--IYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSV 464
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y ++ LY K GK L + ++ + A +K Y +I+ ++L D +A +FE
Sbjct: 465 IS-YGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFE 523
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L D + N +I +C G +++A V + + +++ + G+ ++
Sbjct: 524 DVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSG 583
Query: 239 QIHKAVEAMKKVLAAYQTLVKWK---PSVESLAACL 271
+ +A+E +++W P+V + A +
Sbjct: 584 DMRRALEIFD--------MMRWSGCIPTVHTFNALI 611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 9/209 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T +N+++ + EK ++ EM GI+ + +TY T + YA D
Sbjct: 595 MRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGD 654
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T ++ + + LD Y + K G + ALA+ ++ Q K + Y
Sbjct: 655 TGKAFEYFTKLKTE-GLELDVYTYEALLKACCKSGRMQSALAVTREMSSQ-KIPRNTFVY 712
Query: 124 NVILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
N+++ + + G DV EL ++ V+ + Y + I++ K D++ A K +E
Sbjct: 713 NILIDGWARRG---DVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQE 769
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E + + + LI + R L EKA
Sbjct: 770 MEVVGVKPNIKTYTTLIHGWARASLPEKA 798
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R T VYN ++ + + G+ + LM +M++ G+ D +TY + ++A A
Sbjct: 698 REMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKA 757
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + K + ME PN+ Y T+ +G+ + L +KAL + E + G K
Sbjct: 758 GDMQRATKTIQEMEVVGVKPNIK----TYTTLIHGWARASLPEKALKCFQ--EMKSAGLK 811
Query: 119 VNSA-YNVILT 128
+ A Y+ ++T
Sbjct: 812 PDKAVYHCLMT 822
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 114/264 (43%), Gaps = 16/264 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V+YN++++ + GN ++ + EM++ T+ + +A + D
Sbjct: 529 GLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRA 588
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+I MM + A + G + ++KA+ +L E + G N Y I
Sbjct: 589 LEIFDMMRWSGCIPTVHTFNALI-LGLVEKCQMEKAVEIL--DEMSLAGISPNEHTYTTI 645
Query: 127 LTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ Y G D + +E + K +++ Y ++ + K ++SA + E S
Sbjct: 646 MHGYASLG---DTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSS 702
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
Q + +T + N LID + R G + +A L+ K +G + + ++ + + +
Sbjct: 703 QKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQR 762
Query: 243 AVEAMKKVLAAYQTLVKWKPSVES 266
A + ++++ +V KP++++
Sbjct: 763 ATKTIQEM-----EVVGVKPNIKT 781
>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
Length = 519
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 18/222 (8%)
Query: 1 MQKMRDLGLARTTVV-YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM+ + + T+V YN +L+ + + G+ +++D L +++E+ ++ D YTY L AY
Sbjct: 185 FEKMKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDAYG 244
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ ++ +L M++ D + + + + YG+ + DK + + KS + K
Sbjct: 245 KNGMIKEMESVLLRMKSK-QCRPDVITFNILIDSYGRKQIFDK-MEQVFKSLLRSKERPT 302
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRN-------VISSLLKLDDLE 171
+ +N ++T YGK R+ E + VK + GY+ +I D +
Sbjct: 303 HPTFNSMITNYGK-------ARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAHCDCVS 355
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
A ++F+E S N ++D YC NGL +A+ L++
Sbjct: 356 KARQVFDELVSSQNKVQLSSLNSMLDAYCMNGLHTEADQLLD 397
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 126/276 (45%), Gaps = 16/276 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++ G+ + V Y+ ++ + K + E D E +E T + Y + A+
Sbjct: 326 VRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQ 385
Query: 61 ASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A + + ++ ME + + +D IY T+ +GY +G +K L + + +E V
Sbjct: 386 ACNMTQAEALVREMEEEGIDAPID--IYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSV 443
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y ++ LY K GK L + ++ + A +K Y +I+ ++L D +A +FE
Sbjct: 444 IS-YGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFE 502
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L D + N +I +C G +++A V + + +++ + G+ ++
Sbjct: 503 DVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSG 562
Query: 239 QIHKAVEAMKKVLAAYQTLVKWK---PSVESLAACL 271
+ +A+E +++W P+V + A +
Sbjct: 563 DMRRALEIFD--------MMRWSGCIPTVHTFNALI 590
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 9/209 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G T +N+++ + EK ++ EM GI+ + +TY T + YA D
Sbjct: 574 MRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGD 633
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ T ++ + + LD Y + K G + ALA+ ++ Q K + Y
Sbjct: 634 TGKAFEYFTKLKTE-GLELDVYTYEALLKACCKSGRMQSALAVTREMSSQ-KIPRNTFVY 691
Query: 124 NVILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
N+++ + + G DV EL ++ V+ + Y + I++ K D++ A K +E
Sbjct: 692 NILIDGWARRG---DVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQE 748
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E + + + LI + R L EKA
Sbjct: 749 MEVVGVKPNIKTYTTLIHGWARASLPEKA 777
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + R T VYN ++ + + G+ + LM +M++ G+ D +TY + ++A A
Sbjct: 677 REMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKA 736
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D + K + ME PN+ Y T+ +G+ + L +KAL + E + G K
Sbjct: 737 GDMQRATKTIQEMEVVGVKPNIK----TYTTLIHGWARASLPEKALKCFQ--EMKSAGLK 790
Query: 119 VNSA-YNVILT 128
+ A Y+ ++T
Sbjct: 791 PDKAVYHCLMT 801
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 115/265 (43%), Gaps = 18/265 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V+YN++++ + GN ++ + EM++ T+ + +A + D
Sbjct: 508 GLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRA 567
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE--EQIKGAKVNSAYNV 125
+I MM + A + +GL++K M K E +++ A ++ +
Sbjct: 568 LEIFDMMRWSGCIPTVHTFNALI------LGLVEKC-QMEKAVEILDEMSLAGISPNEHT 620
Query: 126 ILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
T+ Y D + +E + K +++ Y ++ + K ++SA + E
Sbjct: 621 YTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMS 680
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
SQ + +T + N LID + R G + +A L+ K +G + + ++ + +
Sbjct: 681 SQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQ 740
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVES 266
+A + ++++ +V KP++++
Sbjct: 741 RATKTIQEM-----EVVGVKPNIKT 760
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 15/235 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M D + V++ +++ K G ++ M + G+ D TY + +
Sbjct: 272 MNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCL 331
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
S+ + DK+ M PNV + Y+T+ NGY K+ +DKA+ + EE +
Sbjct: 332 RSEMDEADKVFDTMVRKGCAPNV----ISYSTLINGYCKIQRIDKAMYLF---EEMCQRE 384
Query: 118 KVNS--AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAE 174
V + YN ++ G+ D + ++ + ++ + YR ++ L K L+ A
Sbjct: 385 LVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAM 444
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
+ + E L D + N +ID CR G LE A +L + KG +H W Y
Sbjct: 445 AMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKG--LHPDVWTY 497
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 13/217 (5%)
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW 143
V Y T+ +G KVG A+ +L+ + K + N YN I+ K + ++ L I+
Sbjct: 180 VTYGTLIHGLCKVGNSRAAIRLLRSMVQ--KNCEPNVITYNTIIDCLFKDRQVNEALNIF 237
Query: 144 -ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
E+ K + + Y ++I L K + + + E + + I L+D C+
Sbjct: 238 SEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKE 297
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK--W 260
G++ A ++V+ +G E V ++ L G+ S++ +A KV + T+V+
Sbjct: 298 GMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEA----DKV---FDTMVRKGC 350
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P+V S + ++ + I A E + + +P
Sbjct: 351 APNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVP 387
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/290 (19%), Positives = 115/290 (39%), Gaps = 16/290 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ YN+++ +K + ++ EM GI+ + TY + + S+ + + ++
Sbjct: 214 VITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMN 273
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLL----DKALAMLKKSEEQIKGAKVNSAYNVILT 128
M D + + VI+ T+ + K G++ D M+++ E Y ++
Sbjct: 274 EM-VDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDV-----VTYTALMD 327
Query: 129 LYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+ + D+ ++++ + +K Y +I+ K+ ++ A +FEE + L
Sbjct: 328 GHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVP 387
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
+ N LI C G L A L HE + +I Y + Y ++ AM
Sbjct: 388 NIVTYNTLIHGLCHVGRLRDAIALF-HEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAM 446
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K + P ++S +D G++ A + L+ KG P
Sbjct: 447 LKAIEGS----NLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHP 492
>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 97/216 (44%), Gaps = 17/216 (7%)
Query: 1 MQKMRDLGLARTTV-VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+Q+M+ L V Y+++LK FE +++L EM E IT + T LS Y
Sbjct: 188 LQQMKTLPRCLPDVYTYSTLLKACVDASRFELVEALYQEMGERLITPNTVTQNIVLSGYG 247
Query: 60 DASDHEGIDKILTMM----EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
A ++ ++++L+ M E P+V +I + GN G++ L++K E+ +
Sbjct: 248 KAGMYDQMERVLSGMLESTECKPDVWTMNIILSVFGNK-GQIDLMEKWY-------EKFR 299
Query: 116 GAKVNSAYNVILTLYGKYGKK---DDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLE 171
+ L G YGKK D + + E +K + Y NVI + D++
Sbjct: 300 SFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIEAFAVAGDVK 359
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK 207
E F++ ++ + DT+ LI+ Y GL K
Sbjct: 360 HMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHK 395
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 109/248 (43%), Gaps = 3/248 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE-NGITYDRYTYCTRLSAYADA 61
+M + G+ T +Y ++L Y + ++ S++ +M+ D YTY T L A DA
Sbjct: 155 EMVEEGIEPTAELYTALLAAYCRNHLTDEAFSILQQMKTLPRCLPDVYTYSTLLKACVDA 214
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
S E ++ + M + + + V V +GYGK G+ D+ +L E +
Sbjct: 215 SRFELVEALYQEM-GERLITPNTVTQNIVLSGYGKAGMYDQMERVLSGMLESTECKPDVW 273
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
N+IL+++G G+ D + + +E ++ ++ + +I + K + + E
Sbjct: 274 TMNIILSVFGNKGQIDLMEKWYEKFRSFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFM 333
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ T N +I+ + G ++ E + + +G + K++ L GY
Sbjct: 334 RKLQFPWTTSTYNNVIEAFAVAGDVKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLF 393
Query: 241 HKAVEAMK 248
HK + +++
Sbjct: 394 HKVISSVQ 401
>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Brachypodium distachyon]
Length = 676
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 123/298 (41%), Gaps = 52/298 (17%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
R V +N++L Y + G + + L EM + + ++ T ++ + A ++K
Sbjct: 124 RDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVA----SWNTMVTGFFSAGQ---VNKA 176
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
L M +A P D T+ +G+ K G L +A +L K + AYN ++ Y
Sbjct: 177 LDMFDAMP--VKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAY 234
Query: 131 GKYGKKDDVLRIWEL-----YKKAVKVLNNGYRNVIS------SLLKLDDLESAEKIFEE 179
G+ G+ D R++++ Y+ + RNV+S ++ D+ SA +IF E
Sbjct: 235 GQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNE 294
Query: 180 --------W--------------ESQALCYDTRIP-----NFLIDVYCRNGLLEKAENLV 212
W E++ L ++ P N +I + + G +E A
Sbjct: 295 MPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEHARGFF 354
Query: 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270
+ +G SW + +GY QN A+E K+L A T + S LAAC
Sbjct: 355 DRMPERG----TISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFS-SVLAAC 407
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 26/249 (10%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
AR V +NSM+ Y +TG+ + +EM + D ++ T ++ Y SD E +
Sbjct: 265 FARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDK----DLVSWNTMIAGYTKVSDMEEAE 320
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILT 128
K+ M DP++ V + + G+ + G ++ A + E + ++N +++
Sbjct: 321 KLFWEMP-DPDI----VSWNLIIRGFTQKGDVEHARGFFDRMPE-----RGTISWNTMIS 370
Query: 129 LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL----KLDDLESAEKIFEEWESQA 184
Y + G D + EL+ K ++ R+ SS+L L L ++ + E ++
Sbjct: 371 GYEQNGHYDGAI---ELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLIE-KS 426
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
DT N L+ +Y R G L AE + K + SW L GY + +A+
Sbjct: 427 FLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKD----LVSWNALIGGYEHHGCATEAL 482
Query: 245 EAMKKVLAA 253
+ + + +A
Sbjct: 483 QLFEDMRSA 491
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 41/258 (15%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD-------ASD 63
R T+ +N+M+ Y + G+++ L +M E G T DR+T+ + L+A A A
Sbjct: 360 RGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQL 419
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
H+ I+K A N + Y + G L A A+ K+ + K ++
Sbjct: 420 HQLIEKSFLPDTATSNALM---------TMYSRGGALTDAEAIFKQMPQ-----KDLVSW 465
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
N ++ Y +G + L+++E + A +V+ I+ + L +A + E W
Sbjct: 466 NALIGGYEHHGCATEALQLFEDMRSA-RVMPTH----ITFISLLSACGNAGLVSEGW--- 517
Query: 184 ALCYDTRIPNF-----------LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
+ +DT I + L+++ R+G L+ A ++N + ++ T
Sbjct: 518 -MVFDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACT 576
Query: 233 GYRQNSQIHKAVEAMKKV 250
+ H A +A+ K+
Sbjct: 577 AKKNELLAHMAAKALSKI 594
>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
Length = 593
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 120/264 (45%), Gaps = 20/264 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ +G Y +++ + + G EK + + EM++ G D Y Y + AY+ A
Sbjct: 295 EMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAG 354
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+G +I ++ME +P D Y + + YG+ GL +A A ++ ++Q +
Sbjct: 355 LPQGASEIFSLMEHMGCEP----DRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTM 410
Query: 120 NSAYNVILTLYGKYG---KKDDVLRIWELYKKAVK---VLNNGYRNVISSLLKLDDLE-- 171
S + ++L+ + K G + ++V+ +L+K ++ N N +LDD+E
Sbjct: 411 KS-HMLLLSAHAKSGNVARCEEVMA--QLHKSGLRPDTFALNAMLNAYGRAGRLDDMERL 467
Query: 172 --SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
+ E+ ++ DT N L++VY R G L++ E +G V +W
Sbjct: 468 LGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTS 527
Query: 230 LATGYRQNSQIHKAVEAMKKVLAA 253
Y + + + +E ++++ A
Sbjct: 528 RIGAYARKKEYGRCLEIFEEMVDA 551
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 133/316 (42%), Gaps = 18/316 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YN ++ Y + K +S+ + E TY L AY ++ + +++
Sbjct: 166 ICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISE 225
Query: 74 MEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLY 130
M+ + P A +Y +G K +KA+ + ++ +++ + N+ Y +++ +Y
Sbjct: 226 MQKNGLPPTA---TVYNAYLDGLLKARCSEKAVEVYQRMKKE--RCRTNTETYTLMINVY 280
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
GK + L+++ E+ K Y ++++ + E AE++FEE + D
Sbjct: 281 GKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDV 340
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N L++ Y R GL + A + + + G E S+ L Y + + +H+ E
Sbjct: 341 YAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGR-AGLHQEAE---- 395
Query: 250 VLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDN 307
AA+Q L + +P+++S L G++ E + L+ G P + N
Sbjct: 396 --AAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLN 453
Query: 308 VQNGKSNLETLRELYG 323
L+ + L G
Sbjct: 454 AYGRAGRLDDMERLLG 469
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 107/290 (36%), Gaps = 47/290 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ GL T VYN+ L K EK + M++ + TY ++ Y
Sbjct: 223 ISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGK 282
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A K+ M+ PN+ Y + N + + GL +KA + ++ ++
Sbjct: 283 AKQPMSSLKVFNEMKTIGCKPNI----CTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 338
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
V AYN ++ Y + G L G A +IF
Sbjct: 339 DV-YAYNALMEAYSRAG------------------LPQG----------------ASEIF 363
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E D N L+D Y R GL ++AE K +G +KS L + + ++
Sbjct: 364 SLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKS 423
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ + E M ++ + +P +L A L+ + G + E +
Sbjct: 424 GNVARCEEVMAQLHKS-----GLRPDTFALNAMLNAYGRAGRLDDMERLL 468
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+++ G+ T + +L + K+GN + + +M ++ ++G+ D + L+AY
Sbjct: 398 FQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGR 457
Query: 61 ASDHEGIDKILTMME------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
A + ++++L ME A A D Y + N YG+ G LD+ A + +
Sbjct: 458 AGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARG 517
Query: 115 KGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV 150
A V + + I G Y +K + R E++++ V
Sbjct: 518 LAADVVTWTSRI----GAYARKKEYGRCLEIFEEMV 549
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/348 (20%), Positives = 152/348 (43%), Gaps = 32/348 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M G+ V Y+S++ G + L+ +M E I D +T+ + A+
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+K+ M DP++ V Y+++ NG+ LD+A M + +
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSI----VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V + YN ++ + KY + ++ + ++ E+ ++ + Y +I L + D + A++I
Sbjct: 395 DVVT-YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+E S + + N L+D C+NG LEKA + + + E + ++ + G +
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 237 NSQIHK--------AVEAMKKVLAAYQTLVKW---KPSVESLAACLDYFKDEGDIGGAEN 285
++ +++ +K + AY T++ K S E A K++G
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT------ 567
Query: 286 FIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
L + G T ++ +L D + +++ E ++E+ AG+ T+
Sbjct: 568 ----LPNSGCYNTLIRARLRDG--DREASAELIKEMRSCGFAGDASTI 609
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 139/306 (45%), Gaps = 8/306 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++ + G V N+++ KTGN ++ L+ +M E G D+ TY T +S
Sbjct: 481 RLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 540
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E K+ M + D Y + +G ++G LD+A+ + + + + V +
Sbjct: 541 KVEEGFKLRGEM-VKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYT- 598
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y V++ Y K K ++ +++ EL + +++ + Y +I + + + A K+ ++
Sbjct: 599 YGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR 658
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S+ + T + LI C G +E A+ L++ + +G +V + L GY + Q+
Sbjct: 659 SKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMD 718
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
K V +++ +++Y P+ + +D + GD+ A + + KG +P +
Sbjct: 719 KVVNVLQE-MSSYDI----HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVT 773
Query: 302 DKLLDN 307
+L N
Sbjct: 774 YNVLTN 779
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 17/268 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+ +V NS+++ + K G E+ + ++ EM G + + + T + S
Sbjct: 377 MVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSR 436
Query: 64 HEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + L M PN D ++ VG G K G A+ + + E+ GA +
Sbjct: 437 FESALRFLREMLLRNMRPN---DGLLTTLVG-GLCKEGKHSDAVELWFRLLEKGFGANLV 492
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
+ N ++ K G + +R+ + + VL+ Y +IS K +E K+ E
Sbjct: 493 TT-NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGE 551
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
Q + DT N LI CR G L++A NL N K + +V ++ + GY + +
Sbjct: 552 MVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADK 611
Query: 240 IHKAVEAMKKVL--------AAYQTLVK 259
I + + ++L Y TL++
Sbjct: 612 IEEGEKLFTELLTQNLELNSVVYNTLIR 639
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 10/190 (5%)
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139
V+ D +++T N + K G ++ A+ + E+ V + N+I L K+G D+
Sbjct: 242 VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLC-KHGNLDEA 300
Query: 140 LRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
R E + K V Y +I+ L+KL+ A + +E + + + N LID
Sbjct: 301 FRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDG 360
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA------ 252
YC+ G L A + KG + + + G+ + Q+ +A ++++L+
Sbjct: 361 YCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSIN 420
Query: 253 --AYQTLVKW 260
A+ T++ W
Sbjct: 421 PGAFTTIIHW 430
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR GL V Y +++ Y K G +K+ +++ EM I ++ TY + Y+
Sbjct: 689 IDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSK 748
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM 106
+ D + K+L M + D V Y + NG+ K G +++ +
Sbjct: 749 SGDMKTAAKLLHEMVGK-GIVPDTVTYNVLTNGFCKEGKIEEGFKI 793
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 19/225 (8%)
Query: 36 MHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME---ADPNVALDWVIYATVGN 92
+ E G++ D Y + T ++A+ E ++ ME PNV V Y + +
Sbjct: 234 VFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNV----VTYNNLIH 289
Query: 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSA---YNVI---LTLYGKYGKKDDVLRIWELY 146
G K G LD+A + +E++ VN+ Y+V+ L K+ + + VL+ E
Sbjct: 290 GLCKHGNLDEAF----RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLK--ETL 343
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
+K Y +I K+ +L A +I + S+ + ++ N +I +C+ G +E
Sbjct: 344 EKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQME 403
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
+AE ++ +G I+ ++ + NS+ A+ ++++L
Sbjct: 404 QAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREML 448
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 21/258 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY----- 58
M LG++ V YN+++ K GN ++ +M ++G+ TY ++
Sbjct: 272 MEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEK 331
Query: 59 ---ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
A++ E ++K T PN V+Y T+ +GY K+G L AL + + + K
Sbjct: 332 FNEANSVLKETLEKGFT-----PN----EVVYNTLIDGYCKMGNLGDALRI--RGDMVSK 380
Query: 116 GAKVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
G NS N I+ + K G+ + I E+ + + + +I L ESA
Sbjct: 381 GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESA 440
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ E + + + + L+ C+ G A L KG ++ + L G
Sbjct: 441 LRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHG 500
Query: 234 YRQNSQIHKAVEAMKKVL 251
+ + +AV +KK+L
Sbjct: 501 LCKTGNMQEAVRLLKKML 518
>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like, partial [Cucumis sativus]
Length = 312
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 13/257 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR + +++ + G EK + + +M+E G D Y Y + +Y+ A
Sbjct: 21 EMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAG 80
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
G +I ++M+ +P D Y + + YG+ GL + A A+ ++ ++I
Sbjct: 81 FPYGAAEIFSLMQHMGCEP----DRASYNIMVDAYGRAGLHEDAQAVFEEM-KRIGITPT 135
Query: 120 NSAYNVILTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++ ++L+ Y G K +D+ I +++K +K ++++ +L E +
Sbjct: 136 MKSHMLLLSAYSSAGNVAKCEDI--IGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDL 193
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F + D N LI+VY R G +E+ E L K E V +W Y +
Sbjct: 194 FSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSR 253
Query: 237 NSQIHKAVEAMKKVLAA 253
+ +E +K++ A
Sbjct: 254 KKLYKRCLELFEKMIDA 270
>gi|357445509|ref|XP_003593032.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482080|gb|AES63283.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 627
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 110/209 (52%), Gaps = 7/209 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+++D L V+Y ++L + G +E+ + ++M+ G + + Y Y + L+AY+
Sbjct: 197 IQELQDNKLRMDDVIYGAILAVCASNGKWEEAEYYFNQMKSEGRSPNVYHYSSLLNAYSA 256
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D D ++ ME++ +A + VI T+ Y + GL +K+ +L K E + A+
Sbjct: 257 CGDFTKADALIQDMESE-GLAPNKVILTTLLKVYVRGGLFEKSRELLAKLES-LGYAEDE 314
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRN--VISSLLKLDDLESAEKIF 177
Y V++ K + + I+ E+ KK V+++GY + +IS+ + + A+++
Sbjct: 315 MPYCVLMDGLAKARQTHEAKIIFDEMMKK--HVMSDGYAHSIIISAFCRAKLFQEAKQLA 372
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLE 206
+++++ YD I N ++ +CR G +E
Sbjct: 373 KDFQTTFDKYDVVIMNSMLCAFCRAGEME 401
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 38/205 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q M GLA V+ ++LK+Y + G FEK L+ ++E G D YC + A
Sbjct: 267 IQDMESEGLAPNKVILTTLLKVYVRGGLFEKSRELLAKLESLGYAEDEMPYCVLMDGLAK 326
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A HE KI+ +V D ++ + + + + L +A + K +
Sbjct: 327 ARQTHEA--KIIFDEMMKKHVMSDGYAHSIIISAFCRAKLFQEAKQLAKDFQ-------- 376
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
T + KY V ++N +++ + + ++ES + +
Sbjct: 377 --------TTFDKYD---------------VVIMN----SMLCAFCRAGEMESVMETLRK 409
Query: 180 WESQALCYDTRIPNFLIDVYCRNGL 204
+ A+ D N LI +CR +
Sbjct: 410 MDELAISPDYNTFNILIKYFCRKNM 434
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 90/241 (37%), Gaps = 43/241 (17%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
V NS+L K G F+ L +M+ +G+ D TY T ++ D G K L ++
Sbjct: 140 VCNSVLSCLIKKGKFDTTMKLFRQMKHDGLVPDLVTYSTLIAGCVKVKD--GYPKALELI 197
Query: 75 E--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
+ D + +D VIY + G ++A + + + + V Y+ +L Y
Sbjct: 198 QELQDNKLRMDDVIYGAILAVCASNGKWEEAEYYFNQMKSEGRSPNVYH-YSSLLNAYSA 256
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
G D A+ + ++ ES+ L + I
Sbjct: 257 CG----------------------------------DFTKADALIQDMESEGLAPNKVIL 282
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV----EAMK 248
L+ VY R GL EK+ L+ + G + L G + Q H+A E MK
Sbjct: 283 TTLLKVYVRGGLFEKSRELLAKLESLGYAEDEMPYCVLMDGLAKARQTHEAKIIFDEMMK 342
Query: 249 K 249
K
Sbjct: 343 K 343
>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 484
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 136/325 (41%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT Y+++ K+ + G F ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSXGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D + Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVITYNTMINGYYRVKKMEEA----EKYFVEMKGKNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + + D I LI C+ G L+ A +++ + L Y
Sbjct: 278 LKEMVDKYIAPTDNSIFMRLISSQCKAGNLDAAADVLKSMIRLSVPTEAGHYGVLIENYC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q +AV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPS--AYNPIVEYLCNNGQTSKAEALVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 MKLGVQDPTALNTLIRGHSQEGSPD 420
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 102/265 (38%), Gaps = 36/265 (13%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ + T V Y +++K Y + L+ EM+ GI + TY T L +A
Sbjct: 210 EMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAE 269
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
IL M D I+ + + K G LD A +L KS ++
Sbjct: 270 KMSEARSILKEMVDKYIAPTDNSIFMRLISSQCKAGNLDAAADVL-KSMIRLSVPTEAGH 328
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
Y V++ Y K G+ Y +AVK+L+ L++ D + +
Sbjct: 329 YGVLIENYCKAGQ----------YDQAVKLLDK--------LIEKDIIVRPQ-------- 362
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
L + N +++ C NG KAE LV G + + L G+ Q
Sbjct: 363 STLHMEPSAYNPIVEYLCNNGQTSKAEALVRQLMKLGVQ-DPTALNTLIRGHSQEGSPDS 421
Query: 243 AVEAMKKVL--------AAYQTLVK 259
A E +K +L +AY +LV+
Sbjct: 422 AFELLKIMLRRKVGSEKSAYDSLVQ 446
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 150/343 (43%), Gaps = 22/343 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M G+ V Y+S++ G + L+ +M E I D +T+ + A+
Sbjct: 893 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 952
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+K+ M DP++ V Y+++ NG+ LD+A M + +
Sbjct: 953 EGKLVEAEKLYDEMVKRSIDPSI----VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 1008
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V + YN ++ + KY + ++ + ++ E+ ++ + Y +I L + D + A++I
Sbjct: 1009 DVVT-YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 1067
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+E S + + N L+D C+NG LEKA + + + E + ++ + G +
Sbjct: 1068 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 1127
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
++ + L +L KP V + + F +G A+ + + + G +
Sbjct: 1128 AGKVEDGWD-----LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 1182
Query: 297 P------TDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
P T ++ +L D + +++ E ++E+ AG+ T+
Sbjct: 1183 PNSGCYNTLIRARLRDG--DREASAELIKEMRSCGFAGDASTI 1223
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 152/357 (42%), Gaps = 42/357 (11%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS---DH 64
G+ V Y +++ + + L+ +M + IT + TY L A+ +
Sbjct: 323 GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEA 382
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ + + + M DP D V Y+++ NG +D+A M + A V S YN
Sbjct: 383 KELFEEMVRMSIDP----DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVS-YN 437
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ + K + +D ++++ E+ ++ + Y +I + D++ A++ F + +
Sbjct: 438 TLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFF 497
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE--IHVKSWYYLATGYRQNSQIH 241
+ D N L+ C NG LEKA LV E ++ RE + + ++ + G + ++
Sbjct: 498 GISPDIWTYNILLGGLCDNGELEKA--LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVE 555
Query: 242 KA--------VEAMKKVLAAYQTLVKWKPS------VESLAACL--------DYFKDEGD 279
+A ++ +K + Y T++ + VE+L + D +GD
Sbjct: 556 EAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGD 615
Query: 280 IGGAENFIELLNDKGFIPTDLQDKLLDNVQNG--KSNLETLRELYGNSLAGNEETLS 334
I + I+ + G+ P+ LL ++++G K L LR G + E LS
Sbjct: 616 ITLSAELIKKMLSCGYAPS-----LLKDIKSGVCKKALSLLRAFSGKTSYDYREKLS 667
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M GL TV YN++++ +++ G+ +K +M+ GI+ D +TY L D
Sbjct: 456 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 515
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAML 107
+ E I M+ + LD V Y TV G K G +++A ++
Sbjct: 516 NGELEKALVIFEDMQKR-EMDLDIVTYTTVIRGMCKTGKVEEAWSLF 561
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 115/273 (42%), Gaps = 21/273 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM ++G V YN+++ KT E+E GI + TY ++ +
Sbjct: 281 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 340
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+S ++L+ M + PNV + Y+ + + + K G K L + EE ++ +
Sbjct: 341 SSRWSDAARLLSDMIKKKITPNV----ITYSALLDAFVKNG---KVLEAKELFEEMVRMS 393
Query: 118 KVNS--AYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAE 174
Y+ ++ + + D+ ++++L K Y +I+ K +E
Sbjct: 394 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 453
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+F E + L +T N LI + + G ++KA+ + G + ++ L G
Sbjct: 454 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 513
Query: 235 RQNSQIHKAV---EAMKKV-----LAAYQTLVK 259
N ++ KA+ E M+K + Y T+++
Sbjct: 514 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 546
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 118/288 (40%), Gaps = 52/288 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
MQK R++ L V Y ++++ KTG E+ SL + G+ D TY T +S
Sbjct: 529 MQK-REMDL--DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCT 585
Query: 61 ASDHEGIDKILTMME-----------ADPNVALDW-VIYATVGNGYG-------KVGLLD 101
++ + T M+ +D ++ L +I + GY K G+
Sbjct: 586 KGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCK 645
Query: 102 KALAML-------------KKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK 148
KAL++L K S + K++ A + L+G+ K I E K
Sbjct: 646 KALSLLRAFSGKTSYDYREKLSRNGLSELKLDDA----VALFGEMVKSRPFPSIIEFSK- 700
Query: 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
++S++ K++ + + E+ ++ + ++ + LI+ +CR L A
Sbjct: 701 -----------LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLA 749
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV-LAAYQ 255
++ G E ++ + L GY + +I +AV + ++ + YQ
Sbjct: 750 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 797
>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 481
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 129/304 (42%), Gaps = 17/304 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN + K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQXXKAETLVRQL 395
Query: 291 NDKG 294
G
Sbjct: 396 XKLG 399
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 125/296 (42%), Gaps = 18/296 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + V +NS++ + + GN ++ M E G D YTY + +S + E
Sbjct: 258 GFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKA 317
Query: 68 DKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKA--LAMLKKSEEQIKGAKVNSA 122
+IL M E PN V Y T+ + K ++ A LA + S+ +
Sbjct: 318 IEILQQMILRECSPNT----VTYNTLISALCKENEIEAATDLARILVSKGLLPDV---CT 370
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+N ++ +D + ++E K K K Y +I SL L+ A + +E E
Sbjct: 371 FNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEME 430
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S + + N LID C++ +E AE + + +L G ++ L G +N ++
Sbjct: 431 SSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVE 490
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A + M +++ + KP + + L YF GDI A + ++ + G P
Sbjct: 491 EASQLMDQMI-----MEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEP 541
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M LG++R++V YN+++ K E+ LM +M G+ D++TY + L+ +
Sbjct: 463 QMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVG 522
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D E I+ M ++ D Y T+ G + G +D A +L+ Q+KG +
Sbjct: 523 DIEKAGDIVQTMASN-GCEPDIFTYGTLIGGLCRAGRVDVASKLLRSV--QMKGIVLTPH 579
Query: 122 AYN-VILTLYGKYGKKDDVLRIWELYKKA 149
AYN VI L+ + K+ + E+ +K+
Sbjct: 580 AYNPVIQALFMRKRTKEGMRLFREMMEKS 608
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 120/293 (40%), Gaps = 43/293 (14%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
+LG T YN L + + ++ L +M GI D T+ + A A H+
Sbjct: 116 ELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKA--HQ 173
Query: 66 GIDKILTMME-ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
IL + E A+ + D + + T+ G+ + G L+ AL M K Q+ G Y
Sbjct: 174 LRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKK----QMLG------YG 223
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
+LT +VKVL NG+ K +E A + E +
Sbjct: 224 CLLT------------------NVSVKVLVNGF-------CKEGRVEEALRFVLEVSEEG 258
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N L++ +CR G + A ++V+ KG + V ++ L +G + + KA+
Sbjct: 259 FSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAI 318
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
E +++++ L + P+ + + E +I A + +L KG +P
Sbjct: 319 EILQQMI-----LRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLP 366
>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 476
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 136/325 (41%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 95 FQKMEELGVERTIKSYNALFKVILRRGRYMMGKRYFNKMLSEGIEPTRHTFNVMIWGFFL 154
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 155 SGKVETAIRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEA----EKYFVEMKGRNIE 209
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K K Y ++ L + + A I
Sbjct: 210 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGTKPNAITYSTLLPGLCNAEKMSEARVI 269
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C++G L+ A +++ + L +
Sbjct: 270 LKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFC 329
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 330 KAGQYDKAVKLLDKLIEKDIMLRPQSTLHLEPSAHN--PMIEYLCNNGQASKAETLVRQL 387
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 388 MKLGVQDPTALNTLIRGHSQEGSPD 412
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 7/248 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D+G+A + YN+M+ + K G+ E L +M +G + TY LS
Sbjct: 219 EMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTG 278
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ ++ M A ++ D Y+ + +G + G ++ ML E +K + A
Sbjct: 279 RMDETRALMDEM-ASHSMLPDGFTYSILFDGLTRTG---ESQTMLSLFAESLKKGVMLGA 334
Query: 123 YNVILTLYG--KYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y + L G K GK +++E L + Y +I+ ++ DL A IFE+
Sbjct: 335 YTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQ 394
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S+ + D N LI+ C+ ++ KAE+LV + G + V+++ L Y Q
Sbjct: 395 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 454
Query: 240 IHKAVEAM 247
+ K +
Sbjct: 455 LEKCFTVL 462
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 19/299 (6%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q + D G V YN +L +TG ++ +LM EM + + D +TY S D
Sbjct: 254 QMLHD-GPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTY----SILFDG 308
Query: 62 SDHEGIDKILTMMEADP---NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
G + + + A+ V L + + NG K G + KA + E +
Sbjct: 309 LTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVF---EMLVHTGL 365
Query: 119 VNSA--YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEK 175
V + YN ++ Y + I+E K + ++ + Y +I+ L KL+ + AE
Sbjct: 366 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAED 425
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E E + N LID Y G LEK +++ + KG + V S+ + +
Sbjct: 426 LVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFC 485
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+N +I +AV + ++ Y+ + P+ + + +D + + GD A +E + + G
Sbjct: 486 KNGKIPEAVAILDDMI--YKDVA---PNAQVYNSIIDAYIESGDTEQALLLVEKMKNSG 539
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 106/244 (43%), Gaps = 7/244 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ + + YN+++ K K + L+ EME++G+ T+ T + AY
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 451
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS--EEQIKGAK 118
A E +L+ M+ + D + + +V + K G + +A+A+L ++ A+
Sbjct: 452 AGQLEKCFTVLSDMQQK-GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 510
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIF 177
V YN I+ Y + G + L + E K + V Y ++ L + ++ AE++
Sbjct: 511 V---YNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 567
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+Q L D N +I C G +KA L+ G +++ + L +
Sbjct: 568 YTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASA 627
Query: 238 SQIH 241
++H
Sbjct: 628 GRVH 631
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 139/306 (45%), Gaps = 8/306 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++ + G V N+++ KTGN ++ L+ +M E G D+ TY T +S
Sbjct: 548 RLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 607
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E K+ M + D Y + +G ++G LD+A+ + + + + V +
Sbjct: 608 KVEEGFKLRGEM-VKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYT- 665
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y V++ Y K K ++ +++ EL + +++ + Y +I + + + A K+ ++
Sbjct: 666 YGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR 725
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S+ + T + LI C G +E A+ L++ + +G +V + L GY + Q+
Sbjct: 726 SKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMD 785
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
K V +++ +++Y P+ + +D + GD+ A + + KG +P +
Sbjct: 786 KVVNVLQE-MSSYDI----HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVT 840
Query: 302 DKLLDN 307
+L N
Sbjct: 841 YNVLTN 846
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ +V NS+++ + K G E+ + ++ EM G + + + T + S E
Sbjct: 448 GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESA 507
Query: 68 DKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ L M PN D ++ VG G K G A+ + + E+ GA + + N
Sbjct: 508 LRFLREMLLRNMRPN---DGLLTTLVG-GLCKEGKHSDAVELWFRLLEKGFGANLVTT-N 562
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K G + +R+ + + VL+ Y +IS K +E K+ E Q
Sbjct: 563 ALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQ 622
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ DT N LI CR G L++A NL N K + +V ++ + GY + +I +
Sbjct: 623 GIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEG 682
Query: 244 VEAMKKVL--------AAYQTLVK 259
+ ++L Y TL++
Sbjct: 683 EKLFTELLTQNLELNSVVYNTLIR 706
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 10/190 (5%)
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139
V+ D +++T N + K G ++ A+ + E+ V + N+I L K+G D+
Sbjct: 309 VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLC-KHGNLDEA 367
Query: 140 LRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198
R E + K V Y +I+ L+KL+ A + +E + + + N LID
Sbjct: 368 FRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDG 427
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA------ 252
YC+ G L A + KG + + + G+ + Q+ +A ++++L+
Sbjct: 428 YCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSIN 487
Query: 253 --AYQTLVKW 260
A+ T++ W
Sbjct: 488 PGAFTTIIHW 497
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR GL V Y +++ Y K G +K+ +++ EM I ++ TY + Y+
Sbjct: 756 IDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSK 815
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103
+ D + K+L M + D V Y + NG+ K G +++
Sbjct: 816 SGDMKTAAKLLHEMVGK-GIVPDTVTYNVLTNGFCKEGKIEEG 857
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 19/225 (8%)
Query: 36 MHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME---ADPNVALDWVIYATVGN 92
+ E G++ D Y + T ++A+ E ++ ME PNV V Y + +
Sbjct: 301 VFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNV----VTYNNLIH 356
Query: 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSA---YNVI---LTLYGKYGKKDDVLRIWELY 146
G K G LD+A + +E++ VN+ Y+V+ L K+ + + VL+ E
Sbjct: 357 GLCKHGNLDEAF----RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLK--ETL 410
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
+K Y +I K+ +L A +I + S+ + ++ N +I +C+ G +E
Sbjct: 411 EKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQME 470
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
+AE ++ +G I+ ++ + NS+ A+ ++++L
Sbjct: 471 QAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREML 515
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 106/258 (41%), Gaps = 21/258 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY----- 58
M LG++ V YN+++ K GN ++ +M ++G+ TY ++
Sbjct: 339 MEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEK 398
Query: 59 ---ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
A++ E ++K T E V+Y T+ +GY K+G L AL + + + K
Sbjct: 399 FNEANSVLKETLEKGFTPNE---------VVYNTLIDGYCKMGNLGDALRI--RGDMVSK 447
Query: 116 GAKVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
G NS N I+ + K G+ + I E+ + + + +I L ESA
Sbjct: 448 GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESA 507
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+ E + + + + L+ C+ G A L KG ++ + L G
Sbjct: 508 LRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHG 567
Query: 234 YRQNSQIHKAVEAMKKVL 251
+ + +AV +KK+L
Sbjct: 568 LCKTGNMQEAVRLLKKML 585
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 105/236 (44%), Gaps = 8/236 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M D G+ YN ++ Y G ++++ ++ +M G+ D YTY + L+
Sbjct: 230 FQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCA 289
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S+ H +D + + ++ D I+ + Y K G++DKA+ + K + V
Sbjct: 290 LSEMHSFLD-----LMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNV 344
Query: 120 NSAYNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ K G+ DD ++ ++ + V + +++ L +D E AE++
Sbjct: 345 VN-YGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVY 403
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
E Q +C + N LI C G + + L++ + G S+ L +GY
Sbjct: 404 EMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGY 459
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 7/208 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA-YADAS 62
M +GL+ T V YN++L Y + L EM G+T TY T L +
Sbjct: 475 MVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 534
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
E + L M+ + D Y + NG K +D+A M + KG ++N
Sbjct: 535 FSEAKELYLNMINS--GTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCS--KGLQLNII 590
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEW 180
+ +++ K G+K+D + ++ V N YR V +L++ LE + +F
Sbjct: 591 TFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAM 650
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E ++++ N L+ G + +A
Sbjct: 651 EKNGTAPNSQMLNALVRRLLHRGDISRA 678
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 125/301 (41%), Gaps = 22/301 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G+ V +N+++ G + L+ ME G+ D ++Y +S Y A
Sbjct: 404 EMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAG 463
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ +K+ M ++ V Y T+ +GY +D A + + E KG
Sbjct: 464 RTDEAEKVFDGM-VSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFR--EMLRKGVTPGVV 520
Query: 123 -YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAE 174
YN I L+G + K R E + + ++N+G Y +++ L K + ++ A
Sbjct: 521 TYNTI--LHGLFQTK----RFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAF 574
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+F+ S+ L + +I + G E A +L G +V ++ +A
Sbjct: 575 KMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVA--- 631
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+N ++E + +A + P+ + L A + GDI A ++ L+++
Sbjct: 632 -ENLIEEGSLEEFDSLFSAMEK-NGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERN 689
Query: 295 F 295
F
Sbjct: 690 F 690
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 40/229 (17%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M +LG TV Y+ +LK + E+ L+ M
Sbjct: 157 LQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMM--------------------- 195
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A+DH PNV V Y TV +G K L D+A + ++ + G K N
Sbjct: 196 ANDHG--------RSCPPNV----VTYTTVIDGLCKAQLFDRAEGVFQQMIDN--GVKPN 241
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN ++ Y GK +V+++ E + + +K Y ++++ L L ++ S +
Sbjct: 242 NDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMV 301
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
E L D I N Y + G+++KA ++ N + G +V ++
Sbjct: 302 E---NGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNY 347
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 3/238 (1%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN +++++ + G F+++ +L H+M E + + TY + A HE KIL M+
Sbjct: 391 YNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMD 450
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG- 134
+ + Y V YG+ ++AL M E V + YN ++ ++ + G
Sbjct: 451 -EKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVET-YNSLINMFARGGL 508
Query: 135 KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
K+ +W++ + V + + VI + E A K + E E D R
Sbjct: 509 YKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEA 568
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
++ VYC GL++++E + G V + + Y ++++ A E + +++
Sbjct: 569 VLSVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVT 626
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/334 (19%), Positives = 128/334 (38%), Gaps = 43/334 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M + G+ Y ++++ + K EK+ L+ EME +G D +Y L AYA
Sbjct: 271 FRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYAS 330
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + M+ + + V Y+ + N YG G D + + + V
Sbjct: 331 KGDIRHAMGVFRQMQ-EARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVG 389
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-------------------------LYKKAVKVL-- 153
+ YNV++ ++G+ G +V+ ++ L++ A K+L
Sbjct: 390 T-YNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLH 448
Query: 154 ---------NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
Y VI + + E A +F N LI+++ R GL
Sbjct: 449 MDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGL 508
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
+++E ++ G S+ + GYRQ Q +A++ ++ A +++P
Sbjct: 509 YKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKA-----RFQPDE 563
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A L + G + +E + G +P+
Sbjct: 564 RTFEAVLSVYCTAGLVDESEEQFREIRASGILPS 597
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 119/279 (42%), Gaps = 12/279 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR G+ + YN++L G ++ + + M E G+ D TY + + +
Sbjct: 238 EMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLN 297
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E + ++L ME+ N+ D Y + Y G + A+ + ++ +E +
Sbjct: 298 KLEKVSELLKEMESSGNLP-DISSYNVLLEAYASKGDIRHAMGVFRQMQEA-RCVPNAVT 355
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD-LESAEKIFEEWE 181
Y+++L LYG +G+ DDV ++ K + + G NV+ + + +F +
Sbjct: 356 YSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMV 415
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + + LI + GL E A+ ++ H KG K++ + Y Q +
Sbjct: 416 EENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYE 475
Query: 242 KAVEAMKKVLAAYQTL--VKWKPSVESLAACLDYFKDEG 278
+A L + T+ + KP+VE+ + ++ F G
Sbjct: 476 EA-------LVMFNTMNEMGSKPTVETYNSLINMFARGG 507
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 10/218 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+++M+ + + + YN+++ + G N+E L SL EM GI D TY T L+A A
Sbjct: 200 LERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACA 259
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ + + + M V D Y + +GK+ L+K +LK+ E +
Sbjct: 260 NRGLGDEAEMVFRTMNEGGMVP-DITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDI 318
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL----KLDDLESAEK 175
S+YNV+L Y G + ++ ++A V N +++ +L + DD+ +
Sbjct: 319 -SSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDV---RE 374
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+F E + D N LI+V+ G ++ L +
Sbjct: 375 LFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFH 412
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M ++G T YNS++ ++ + G +++ +++M +M E+G+ DR ++ + Y
Sbjct: 484 MNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQ 543
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-- 121
E K +E D + V + Y GL+D +SEEQ + + +
Sbjct: 544 FEEAIKTYVELE-KARFQPDERTFEAVLSVYCTAGLVD-------ESEEQFREIRASGIL 595
Query: 122 ----AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD-----DLES 172
Y +++ +Y + + DD +E+ + V + V+ ++K D + +
Sbjct: 596 PSVMCYCMMIAVYARSNRWDDA---YEVLDEMVTNKVSNIHQVVGKMMKGDYDDYSNWQM 652
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
E +F++ S+ R N L++ G E+A +++ +G
Sbjct: 653 VEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKERAARVLSEAIKRG 699
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 145/333 (43%), Gaps = 21/333 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DA 61
+M G++ V Y++++ ++ G + L ++M I D YT+ + + D
Sbjct: 222 EMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDG 281
Query: 62 SDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
EG MM+ PNV V Y ++ +GY V ++KA ++L ++ +
Sbjct: 282 KMKEGKTVFAMMMKQGIKPNV----VTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDI 337
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S YN+++ + K K D+ + ++ E++ K + Y ++I L KL + A K+ +
Sbjct: 338 QS-YNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVD 396
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + D + ++D C+N ++KA L+ K +G ++ ++ L G +
Sbjct: 397 EMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGG 456
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++ A + +L + +V + + F ++G A + + D IP
Sbjct: 457 RLEDAHNIFEDLLVK-----GYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPD 511
Query: 299 DLQ-----DKLLDNVQNGKSNLETLRELYGNSL 326
+ L D +N K+ E LRE+ L
Sbjct: 512 AVTYEIIIRSLFDKDENDKA--EKLREMITRGL 542
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 7/217 (3%)
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLR 141
LD V Y T+ +G KVG AL +L++ + + V Y+ I+ K +D
Sbjct: 160 LDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNV-VMYSTIIDGMCKDKHVNDAFD 218
Query: 142 IW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
++ E+ K + Y +IS + L+ A +F + + + D N L+D +C
Sbjct: 219 LYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFC 278
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260
++G +++ + + +G + +V ++ L GY +++KA K + +
Sbjct: 279 KDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKA-----KSILYTMSQRGV 333
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P ++S +D F + A N + ++ K IP
Sbjct: 334 NPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIP 370
>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 847
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 121/258 (46%), Gaps = 14/258 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M +G+A V YN ++K Y ++ L+ +M G + D+ +Y T +
Sbjct: 340 ERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRD 399
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKGAKVN 120
I +++ M+ D + D V Y ++ K G D+AL +L+++E+ + K KV
Sbjct: 400 KRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVE 459
Query: 121 SAYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y+ I+ Y K GK + E++ K Y +V+ ++ L+ A+K+ ++
Sbjct: 460 --YSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQ 517
Query: 180 -----WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ A+ Y T ++ CRNG +A ++N + + + ++ + G
Sbjct: 518 MYKHHCKPNAVTYTT-----FLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGL 572
Query: 235 RQNSQIHKAVEAMKKVLA 252
R+ ++++A + +++++
Sbjct: 573 RREGKLNEACDVVREMIG 590
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 13/217 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G V Y S+L + + G ++ +M +M ++ + TY T L+
Sbjct: 480 VSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCR 539
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KG 116
K++ M E + PN + Y+ V +G + G L++A +++ E I KG
Sbjct: 540 NGKSLEARKMMNMSEEEWWTPNA----ITYSVVVHGLRREGKLNEACDVVR---EMIGKG 592
Query: 117 AKVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
N N+++ + GK + ++ E K V + VI + DDLE+A
Sbjct: 593 FFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAAL 652
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ ++ DT LID + +E+A L
Sbjct: 653 SLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATEL 689
>gi|302798857|ref|XP_002981188.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
gi|300151242|gb|EFJ17889.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
Length = 796
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 120/239 (50%), Gaps = 8/239 (3%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
TTV YN+++K+Y K ++ EM+++ D +T+ T +S Y+ A E + ++
Sbjct: 169 TTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVY 228
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLY 130
M+ +LD V Y V GKVG LD A + ++ + + G + N+ AY+ ++
Sbjct: 229 DEMQKI-GCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAE--GHQPNAVAYSALIAGQ 285
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K G+ + + + E+ ++ L + ++I + K LE+ K F++ E+ +
Sbjct: 286 LKSGRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNL 345
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
I L+D + + G+L+ A L +E+++G + + + A Q++Q KA A++
Sbjct: 346 CIYAALVDAHAKAGMLDAA--LEFYERMRGVGLWLPPLIF-AVLIEQHAQAGKAETAVR 401
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 133/291 (45%), Gaps = 16/291 (5%)
Query: 49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK 108
Y++ L+ Y D + + ++L+ ++AD + V Y T+ YGK LD+A K
Sbjct: 136 YSFSILLNTYGRGKDFQAVQRVLSDLKAD-KCPMTTVAYNTLIKVYGKAHKLDEAWGYYK 194
Query: 109 KSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKL 167
+ ++ + + +N +++LY G+ + VL ++ E+ K + GY V+ K+
Sbjct: 195 EMQDSRCVPDIFT-FNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRVGYEVVVPHAGKV 253
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--VK 225
L+ A +FE +++ + + LI ++G LE E+++ EI +
Sbjct: 254 GRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYF--EEMRSLEIRPLLG 311
Query: 226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN 285
++ L Y ++ ++ ++ K + A +KP++ AA +D G + A
Sbjct: 312 TFASLIEAYCKSGRLETGLKFFKDMEA-----FNYKPNLCIYAALVDAHAKAGMLDAALE 366
Query: 286 FIELLNDKG-FIPTDLQDKLLD-NVQNGKSN--LETLRELYGNSLAGNEET 332
F E + G ++P + L++ + Q GK+ + RE+ G L + T
Sbjct: 367 FYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFT 417
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 15/192 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ G V Y++++ K+G E EM I T+ + + AY
Sbjct: 263 FERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCK 322
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ E K MEA PN+ IYA + + + K G+LD AL E+++G
Sbjct: 323 SGRLETGLKFFKDMEAFNYKPNLC----IYAALVDAHAKAGMLDAALEFY----ERMRGV 374
Query: 118 KV---NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+ + V++ + + GK + +R++ E+ ++ + R V+ ++ K +
Sbjct: 375 GLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFTCRIVVGAVAKGGKYDDV 434
Query: 174 EKIFEEWESQAL 185
E+I E + L
Sbjct: 435 ERILFEMQEMGL 446
>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 731
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 115/255 (45%), Gaps = 9/255 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M G+ VYN ++ K+ + E+ + +++EME G+ D +TY T ++ Y
Sbjct: 189 KRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKK 248
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
H + ME + + LD V Y ++ G+ K G + +A+ M + ++ I +
Sbjct: 249 GLHYEALSVQDKMERE-GINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDAIPN---HV 304
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG---YRNVISSLLKLDDLESAEKIFE 178
Y ++ Y K + ++ LR+ E+ K L G Y +++ L + A K+
Sbjct: 305 TYTTLIDGYCKANEFEEALRLREM--MVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLH 362
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + D+ N LI+ YC+ G L A G + ++ L G+ + S
Sbjct: 363 EMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTS 422
Query: 239 QIHKAVEAMKKVLAA 253
++ A E + +L A
Sbjct: 423 ELESAKELLFGMLDA 437
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 13/222 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V YNS+L+ G + L+HEM E + D T T ++AY D
Sbjct: 333 GLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSA 392
Query: 68 DKILT-MMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAY 123
K T M+EA PN Y + +G+ K L+ A +L + G N Y
Sbjct: 393 LKFKTKMLEAGLTPNS----FTYKALIHGFCKTSELESAKELLFGMLD--AGFSPNYRTY 446
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWES 182
+ I+ Y K D VL + + + LN + YR +I L K++ +E AEK+ E
Sbjct: 447 SWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKIERIECAEKLLYHMEG 506
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV 224
+ + D+ I L Y ++G A +++ E++ R + +
Sbjct: 507 KGISGDSVIYTSLAFSYWKSGNTNAASDML--EEMARRRLMI 546
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 23/234 (9%)
Query: 71 LTMMEADPNV---ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
L + DP V L W++ Y K + A+ + EQ+ + +
Sbjct: 119 LVRIHDDPEVNSHVLSWIVI-----HYAKSKMTHDAVQVF----EQMSLCNLKPHLHACT 169
Query: 128 TLYGKYGKKDDVLRIWELYKKAVK--VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQ 183
L K +W++YK+ V+ V+ N Y +I + K D+E AE I E E +
Sbjct: 170 VLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVK 229
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ D N LI +YC+ GL +A ++ + + +G + + S+ L G+ + ++ +A
Sbjct: 230 GVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREA 289
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ ++ A P+ + +D + + A E++ KG P
Sbjct: 290 MRMFGEIKDAI-------PNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYP 336
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 11/216 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+ +M G+ YN+++ LY K G ++E L S+ +ME GI D +Y + + +
Sbjct: 223 LNEMEVKGVVPDIFTYNTLIALYCKKGLHYEAL-SVQDKMEREGINLDIVSYNSLIYGFC 281
Query: 60 -DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ E + + +A PN V Y T+ +GY K ++AL + + KG
Sbjct: 282 KEGKMREAMRMFGEIKDAIPN----HVTYTTLIDGYCKANEFEEALRL--REMMVAKGLY 335
Query: 119 VNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN IL G+ D ++ E+ ++ V+ + +I++ K+ DL SA K
Sbjct: 336 PGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKF 395
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
+ L ++ LI +C+ LE A+ L+
Sbjct: 396 KTKMLEAGLTPNSFTYKALIHGFCKTSELESAKELL 431
>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Cucumis sativus]
Length = 760
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 136/307 (44%), Gaps = 21/307 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM++LG+ R+ Y+++ K + G + + M GI R+TY L +
Sbjct: 212 FQKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFL 271
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + M++ ++ D V Y T+ NGY + ++++A ++KG +
Sbjct: 272 SLRLETAKRFYEDMKSR-GISPDVVTYNTMINGYCRFKMMEEAEQFFT----EMKGKNIA 326
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKI 176
+Y ++ Y + DD LR++E K A + N+ Y ++ L + L A KI
Sbjct: 327 PTVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKI 386
Query: 177 FEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATG 233
E ++ D I L+ C++G L+ A +++ + + I ++ +Y L
Sbjct: 387 LTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDAAMHVL--KAMIRLSIPTEAGHYGILIEN 444
Query: 234 YRQNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
+ +AV+ + K+++ Q+ ++ + S +L + Y + G G A+ F
Sbjct: 445 CCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAYNL--IIQYLCNHGQTGKADTFFR 502
Query: 289 LLNDKGF 295
L KG
Sbjct: 503 QLLKKGI 509
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 12/257 (4%)
Query: 46 YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWV--IYATVGNGYGKVGLLDKA 103
+DR T+ + AS IL M PN + W ++ + YGK G++ +A
Sbjct: 152 HDRETHFKIIEILGRASKLNHARCILLDM---PNKGVQWDEDLFVVLIESYGKAGIVQEA 208
Query: 104 LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVIS 162
+ + +K +E V S Y+ + + G+ R + + + ++ + + Y ++
Sbjct: 209 VKIFQKMKELGVERSVKS-YDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLW 267
Query: 163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
LE+A++ +E+ +S+ + D N +I+ YCR ++E+AE K K
Sbjct: 268 GFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAP 327
Query: 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGG 282
V S+ + GY S+ A+ +++ AA + KP+ + + L D +
Sbjct: 328 TVISYTTMIKGYVSVSRADDALRLFEEMKAAGE-----KPNDITYSTLLPGLCDAEKLPE 382
Query: 283 AENFIELLNDKGFIPTD 299
A + + + F P D
Sbjct: 383 ARKILTEMVTRHFAPKD 399
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 99/254 (38%), Gaps = 11/254 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G++ V YN+M+ Y + E+ + EM+ I +Y T + Y S
Sbjct: 285 MKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSR 344
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ ++ M+A D + Y+T+ G L +A +L + + K NS +
Sbjct: 345 ADDALRLFEEMKAAGEKPND-ITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIF 403
Query: 124 NVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW-- 180
+L+ K+G D + + + + + ++ Y +I + K + A K+ E
Sbjct: 404 MRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVE 463
Query: 181 ------ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
L + N +I C +G KA+ KG + V ++ L G+
Sbjct: 464 KEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEV-AFNNLIRGH 522
Query: 235 RQNSQIHKAVEAMK 248
+ A E +K
Sbjct: 523 AKEGNPDLAFEMLK 536
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 118/271 (43%), Gaps = 14/271 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G TV YN ++ Y + + ++ +M+E G DR TYCT + +A A +
Sbjct: 379 GCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIA 438
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVI 126
+ M+A ++ D Y+ + N GK G L A + E +G N +N++
Sbjct: 439 MDMYQRMQAA-GLSPDTFTYSVIINCLGKAGHLPAAHRLF--CEMVGQGCTPNLVTFNIM 495
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ L+ K + L+++ ++ + Y V+ L LE AE +F E + +
Sbjct: 496 IALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNW 555
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
D + L+D++ + G +EKA G +V + L + + + ++ +A
Sbjct: 556 VPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYN 615
Query: 246 AMKKVLAAYQTLVKWKPSVES----LAACLD 272
++ +LA + PS+++ L+ C D
Sbjct: 616 LLQSMLA-----LGLHPSLQTYTLLLSCCTD 641
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 15/185 (8%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q+M+ GL+ T Y+ ++ K G+ L EM G T + T+ ++ +A A
Sbjct: 443 QRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKA 502
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
++E K+ M+ + D V Y+ V G G L++A + + + +
Sbjct: 503 RNYETALKLYRDMQ-NAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK-NWVPDEP 560
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR-------NVISSLLKLDDLESAE 174
Y +++ L+GK G +V + W+ Y+ ++L+ G R +++S+ L++ + A
Sbjct: 561 VYGLLVDLWGKAG---NVEKAWQWYQ---EMLHAGLRPNVPTCNSLLSTFLRVHRMSEAY 614
Query: 175 KIFEE 179
+ +
Sbjct: 615 NLLQS 619
>gi|298706229|emb|CBJ29270.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 669
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 13/244 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR+ G+ +N+ L + G +E L+ +M G+ + ++Y + A +
Sbjct: 266 LGRMREAGVEPDVWCFNNCLNAARRRGEWELAFGLLEDMGAAGVEPNCWSYSAVMKACVN 325
Query: 61 ASDHEGIDKILTMME-----ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
A + + +L M+ A PNV W + + YGK G +KA+++L+K
Sbjct: 326 AEEWTLVPALLRAMKEGGSTAPPNV---WNFNICL-DAYGKSGEWEKAVSLLRKDMPAAG 381
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNN-GYRNVISSLLKLDDLES 172
A ++Y+ + GK G+ D L +W+ + A+ LN+ Y I K +
Sbjct: 382 VAPDVTSYSSAIDAAGKAGEWDTALALWDEARAALPPSALNSHAYNIAIGVCGKAGLADR 441
Query: 173 AEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A + E + A L + R N ID R G E+A +L+ + G E V S+
Sbjct: 442 ALSLLSESRAAAGLPPNLRSFNAAIDACARAGRWERALSLLREMEEAGLEPDVVSFTSAI 501
Query: 232 TGYR 235
+R
Sbjct: 502 AAFR 505
>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
Length = 595
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 45/307 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K +D GL V+YN + Y K GN + L++EM+ G+T D+ Y ++ Y
Sbjct: 95 KFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKG 154
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ + ++ M N+ D V Y + +G+ K GL+ + +L + +Q G + NS
Sbjct: 155 EMQNAQQVFEEM-LKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQ--GLEPNSL 211
Query: 122 AYNVILTLYGKYGKKDD---------------------------VLRIW--ELYKKAVKV 152
Y + + + + G + +L W Y V+V
Sbjct: 212 TYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRV 271
Query: 153 LNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
G +I+ L ++ +++ A + + + D + LI +YC+NG +
Sbjct: 272 ARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDM 331
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE 265
+KA + +G I V + L GY + ++ +A + L T + KP V
Sbjct: 332 DKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQ-----LFVQMTNLGIKPDVI 386
Query: 266 SLAACLD 272
+ LD
Sbjct: 387 AYTVLLD 393
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 133/320 (41%), Gaps = 30/320 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY-- 58
+ +M D GL ++ Y + + + GN + + L + +EE GI + Y + + Y
Sbjct: 198 LDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLL 257
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ +DH +L + A +D + + N +VG + A + K E
Sbjct: 258 SGWTDHA---YMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPD 314
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V S Y+ ++++Y + G D +W ++ ++ + + Y +++ K L+ A ++
Sbjct: 315 VIS-YSKLISIYCQNGDMDKA-HLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQL 372
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL----------VNHEKLKGR------ 220
F + + + D L+D + + L + E + NH KL
Sbjct: 373 FVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQI 432
Query: 221 EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI 280
E V + L G + + +A E ++L T P + A ++ + +G+I
Sbjct: 433 EPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLT-----PDAYAYTALINGYCSQGEI 487
Query: 281 GGAENFIELLNDKGFIPTDL 300
AE+ ++ + DKG P +L
Sbjct: 488 SKAEDLLQEMIDKGIEPDEL 507
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 13/218 (5%)
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY 146
Y V +G K LD+A +L+ Q V Y+ ++ Y K G ++++ + Y
Sbjct: 3 YNMVMDGLCKEMRLDEAEKLLENKARQGSNPDV-YGYSYLIQSYCKMG---NLIKAVDHY 58
Query: 147 KKAVKVLNNGYRNVISSLL----KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
+ V +++S LL KL F +++ L D I N +D YC+N
Sbjct: 59 EAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKN 118
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
G + +A L+N K G + L GY ++ A + +++L A +P
Sbjct: 119 GNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKA-----NIEP 173
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+ + F G + + ++ + D+G P L
Sbjct: 174 DIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSL 211
>gi|15240478|ref|NP_198079.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635757|sp|O04647.2|PP399_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g27270; AltName: Full=Protein EMBRYO DEFECTIVE 976
gi|332006282|gb|AED93665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1038
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 4/213 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ LG V Y+S++ L K G++EK L +M GI YT T LS Y
Sbjct: 318 EMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTE 377
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
++ + ME + + D VI + YGK+GL A +M +++ E++
Sbjct: 378 NYPKALSLFADMERN-KIPADEVIRGLIIRIYGKLGLFHDAQSMFEET-ERLNLLADEKT 435
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y + ++ G L + E+ K + + + Y ++ K+ +++ AE+ F
Sbjct: 436 YLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRALS 495
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
L D N ++++Y R L EKA+ +
Sbjct: 496 KTGLP-DASSCNDMLNLYTRLNLGEKAKGFIKQ 527
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 11/232 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G+ + +ML LYYKT N+ K SL +ME N I D + Y
Sbjct: 354 MRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGL 413
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---N 120
+ E N+ D Y + + G + KAL ++ E +K +
Sbjct: 414 FHDAQSMFEETE-RLNLLADEKTYLAMSQVHLNSGNVVKALDVI----EMMKTRDIPLSR 468
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V+L Y K D + K + ++++ +L+ E A+ ++
Sbjct: 469 FAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQI 528
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
+ +D + + VYC+ G++ +A++L+ GRE VK ++ T
Sbjct: 529 MVDQVHFDIELYKTAMRVYCKEGMVAEAQDLIVK---MGREARVKDNRFVQT 577
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 29/233 (12%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+T VYN ML K K+ L EM E G+ + +TY +S+YA E K
Sbjct: 257 STSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAF 316
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV--ILTL 129
M++ V + V Y++V + K G +KA+ + + Q V S Y +L+L
Sbjct: 317 GEMKSLGFVP-EEVTYSSVISLSVKAGDWEKAIGLYEDMRSQ---GIVPSNYTCATMLSL 372
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRN------VISSLL-----KLDDLESAEKIFE 178
Y K E Y KA+ + + RN VI L+ KL A+ +FE
Sbjct: 373 YYKT----------ENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGLFHDAQSMFE 422
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
E E L D + + V+ +G + KA +++ E +K R+I + + Y+
Sbjct: 423 ETERLNLLADEKTYLAMSQVHLNSGNVVKALDVI--EMMKTRDIPLSRFAYIV 473
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 5/231 (2%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI-LTM 73
V SM+ Y + G E L E E G T ++A + H + I T
Sbjct: 706 VIRSMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRTC 765
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
+E N+ LD V Y T+ + G L A + ++ + + YN ++++YG+
Sbjct: 766 LEK--NIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQT-YNTMISVYGRG 822
Query: 134 GKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ D + I+ +++ L+ Y N+I K + A +F E + + + T
Sbjct: 823 LQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSY 882
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
N ++ + + L + + L+ + GR + ++ L Y ++SQ +A
Sbjct: 883 NMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEA 933
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+ VVY +L+LY + G + + EM E G D T L YA H +L
Sbjct: 187 SVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGRHSA---ML 243
Query: 72 TMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAM-LKKSEEQIKGAKVNSAYNVILT 128
T +A + + L +Y + + K K + + L+ EE + + Y ++++
Sbjct: 244 TFYKAVQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFT--YTLVVS 301
Query: 129 LYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
Y K G K++ L+ + E+ Y +VIS +K D E A ++E+ SQ +
Sbjct: 302 SYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGI 359
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G+ T YN M+K+ + ++D L+ ME NG D TY T + YA++S
Sbjct: 869 EMQKKGIKPGTPSYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESS 928
Query: 63 DHEGIDKILTMME 75
+K +T+++
Sbjct: 929 QFAEAEKTITLVK 941
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
TV YN+++K + G + + M +G+ TY T +S Y +DK +
Sbjct: 774 TVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQ---LDKAIE 830
Query: 73 MME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTL 129
+ + LD IY + YGK G + +AL++ SE Q KG K + +YN+++ +
Sbjct: 831 IFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLF--SEMQKKGIKPGTPSYNMMVKI 888
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 92 NGYGKVGLLDKALAMLKKSEEQ--IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA 149
+ Y + G L+ A + +S E+ GA S LT GK+ + + + R +K
Sbjct: 712 DAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRT--CLEKN 769
Query: 150 VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
+++ GY +I ++L+ L+ A +I+E + + + N +I VY R L+KA
Sbjct: 770 IELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAI 829
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ ++ + G + K + + Y + ++ +A+
Sbjct: 830 EIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEAL 864
>gi|302801820|ref|XP_002982666.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
gi|300149765|gb|EFJ16419.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
Length = 796
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 120/239 (50%), Gaps = 8/239 (3%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
TTV YN+++K+Y K ++ EM+++ D +T+ T +S Y+ A E + ++
Sbjct: 169 TTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVY 228
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLY 130
M+ +LD V Y V GKVG LD A + ++ + + G + N+ AY+ ++
Sbjct: 229 DEMQKI-GCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAE--GHQPNAVAYSALIAGQ 285
Query: 131 GKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K G+ + + + E+ ++ L + ++I + K LE+ K F++ E+ +
Sbjct: 286 LKSGRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNL 345
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
I L+D + + G+L+ A L +E+++G + + + A Q++Q KA A++
Sbjct: 346 CIYAALVDAHAKAGMLDAA--LEFYERMRGVGLWLPPLIF-AVLIEQHAQAGKAETAVR 401
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 132/291 (45%), Gaps = 16/291 (5%)
Query: 49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK 108
Y++ L+ Y D + + ++L ++AD + V Y T+ YGK LD+A K
Sbjct: 136 YSFSILLNTYGRGKDFQAVQRVLADLKAD-KCPMTTVAYNTLIKVYGKAHKLDEAWGYYK 194
Query: 109 KSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKL 167
+ ++ + + +N +++LY G+ + VL ++ E+ K + GY V+ K+
Sbjct: 195 EMQDSRCVPDIFT-FNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRVGYEVVVPHAGKV 253
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--VK 225
L+ A +FE +++ + + LI ++G LE E+++ EI +
Sbjct: 254 GRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYF--EEMRSLEIRPLLG 311
Query: 226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAEN 285
++ L Y ++ ++ ++ K + A +KP++ AA +D G + A
Sbjct: 312 TFASLIEAYCKSGRLETGLKFFKDMEA-----FNYKPNLCIYAALVDAHAKAGMLDAALE 366
Query: 286 FIELLNDKG-FIPTDLQDKLLD-NVQNGKSN--LETLRELYGNSLAGNEET 332
F E + G ++P + L++ + Q GK+ + RE+ G L + T
Sbjct: 367 FYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFT 417
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 99/288 (34%), Gaps = 82/288 (28%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ G V Y++++ K+G E EM I T+ + + AY
Sbjct: 263 FERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCK 322
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS------- 110
+ E K MEA PN+ IYA + + + K G+LD AL ++
Sbjct: 323 SGRLETGLKFFKDMEAFNYKPNLC----IYAALVDAHAKAGMLDAALEFYERMRGVGLWL 378
Query: 111 ---------EEQIKGAKVNSAY------------------NVILTLYGKYGKKDDVLRI- 142
E+ + K +A +++ K GK DDV RI
Sbjct: 379 PPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFTCRIVVGAVAKGGKYDDVERIL 438
Query: 143 ------------------------------WELYKKAVKVLNNGY-------RNVISSLL 165
WEL+ +KV +G+ R ++ L
Sbjct: 439 FEMQEMGLNVADAVNDSIVKLVDDKRISDAWELF---LKVTGHGFTPHVSLCREILHGFL 495
Query: 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
D+E A ++ + D R L++ + R LE E +++
Sbjct: 496 SCGDMEHARQMLSFMQRPGSAVDLRTYCMLLEFFLRGSRLEHEEVIIS 543
>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37230-like [Cucumis sativus]
Length = 760
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 136/307 (44%), Gaps = 21/307 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM++LG+ R+ Y+++ K + G + + M GI R+TY L +
Sbjct: 212 FQKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFL 271
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + M++ ++ D V Y T+ NGY + ++++A ++KG +
Sbjct: 272 SLRLETAKRFYEDMKSR-GISPDVVTYNTMINGYCRFKMMEEAEQFFT----EMKGKNIA 326
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKI 176
+Y ++ Y + DD LR++E K A + N+ Y ++ L + L A KI
Sbjct: 327 PTVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKI 386
Query: 177 FEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATG 233
E ++ D I L+ C++G L+ A +++ + + I ++ +Y L
Sbjct: 387 LTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDAAMHVL--KAMIRLSIPTEAGHYGILIEN 444
Query: 234 YRQNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
+ +AV+ + K+++ Q+ ++ + S +L + Y + G G A+ F
Sbjct: 445 CCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAYNL--IIQYLCNHGQTGKADTFFR 502
Query: 289 LLNDKGF 295
L KG
Sbjct: 503 QLLKKGI 509
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 12/257 (4%)
Query: 46 YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWV--IYATVGNGYGKVGLLDKA 103
+DR T+ + AS IL M PN + W ++ + YGK G++ +A
Sbjct: 152 HDRETHFKIIEILGRASKLNHARCILLDM---PNKGVQWDEDLFVVLIESYGKAGIVQEA 208
Query: 104 LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVIS 162
+ + +K +E V S Y+ + + G+ R + + + ++ + + Y ++
Sbjct: 209 VKIFQKMKELGVERSVKS-YDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLW 267
Query: 163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
LE+A++ +E+ +S+ + D N +I+ YCR ++E+AE K K
Sbjct: 268 GFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAP 327
Query: 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGG 282
V S+ + GY S+ A+ +++ AA + KP+ + + L D +
Sbjct: 328 TVISYTTMIKGYVSVSRADDALRLFEEMKAAGE-----KPNDITYSTLLPGLCDAEKLPE 382
Query: 283 AENFIELLNDKGFIPTD 299
A + + + F P D
Sbjct: 383 ARKILTEMVTRHFAPKD 399
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 100/256 (39%), Gaps = 11/256 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ M+ G++ V YN+M+ Y + E+ + EM+ I +Y T + Y
Sbjct: 283 EDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSV 342
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
S + ++ M+A D + Y+T+ G L +A +L + + K NS
Sbjct: 343 SRADDALRLFEEMKAAGEKPND-ITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNS 401
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ +L+ K+G D + + + + + ++ Y +I + K + A K+ E
Sbjct: 402 IFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENL 461
Query: 181 --------ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
L + N +I C +G KA+ KG + V ++ L
Sbjct: 462 VEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEV-AFNNLIR 520
Query: 233 GYRQNSQIHKAVEAMK 248
G+ + A E +K
Sbjct: 521 GHAKEGNPDLAFEMLK 536
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 128/302 (42%), Gaps = 10/302 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M G+ V Y ++L K G + + + M ++GI+ ++ Y + Y
Sbjct: 393 LNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIK 452
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E KIL M + N+ D ++Y ++ G+ L++ +L+ E + +G N
Sbjct: 453 AERMEDAMKILKQM-TECNIKPDLILYGSIIWGHCSQRKLEETKLILE--EMKSRGISAN 509
Query: 121 SAYN-VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ I+ Y K GK D L + E+ V+ Y +I L + +E A F
Sbjct: 510 PVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFC 569
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
S L + + LID C N +E A+ L + + +G + ++ L G ++
Sbjct: 570 RMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHG 629
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ +A+ VL + T + + + + + F G++ A F + +KG +P
Sbjct: 630 NLQEAL-----VLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 684
Query: 299 DL 300
++
Sbjct: 685 EV 686
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 114/258 (44%), Gaps = 18/258 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+ R L AR+ N +L K+GN + + ++M GI +TY +
Sbjct: 186 MRNFRTLPKARSC---NFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCK 242
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E ++ M + ++ D V Y ++ +GYGKVG L++ ++ + ++ +
Sbjct: 243 EGDLENSRRLFVQMR-EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD-VGCVPDI 300
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
YN ++ Y K+ K R +E + ++ NNG Y +I + K ++ A
Sbjct: 301 ITYNGLINCYCKFEKMP---RAFEYFS---EMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 354
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
K+ + L + LID C+ G L +A L+N G ++++ ++ L G
Sbjct: 355 IKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDG 414
Query: 234 YRQNSQIHKAVEAMKKVL 251
+ ++ +A E + +L
Sbjct: 415 LCKAGRMIEAEEVFRSML 432
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 103/245 (42%), Gaps = 5/245 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+A + YN M+ K G+ E L +M E G++ D TY + + Y E +
Sbjct: 225 GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEV 284
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI 126
+ M+ D D + Y + N Y K + +A SE + G K N Y+ +
Sbjct: 285 ASLFNEMK-DVGCVPDIITYNGLINCYCKFEKMPRAFEYF--SEMKNNGLKPNVVTYSTL 341
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ + K G +++ ++ + N Y ++I + K +L A K+ + +
Sbjct: 342 IDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGV 401
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ L+D C+ G + +AE + G + + + L GY + ++ A++
Sbjct: 402 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 461
Query: 246 AMKKV 250
+K++
Sbjct: 462 ILKQM 466
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 100/218 (45%), Gaps = 11/218 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ G++ V+ +++ Y+K G + EM++ G+ TYC + +
Sbjct: 498 LEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCE 557
Query: 61 ASDHE-GIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A E +D M+ PNVA +Y ++ +G ++ A + E Q +G
Sbjct: 558 AGIVELAVDYFCRMLSLGLQPNVA----VYTSLIDGLCXNNCIESAKKLF--DEMQCRGM 611
Query: 118 KVN-SAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ +A+ ++ K+G ++ ++ I + + A++ + Y +++S + +L A K
Sbjct: 612 TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARK 671
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
F E + + + + L+ Y + G L++A L N
Sbjct: 672 FFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKN 709
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +I L K DLE++ ++F + L D N LID Y + G LE+ +L N K
Sbjct: 233 YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK 292
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
G + ++ L Y + ++ +A E ++ KP+V + + +D F
Sbjct: 293 DVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNN-----GLKPNVVTYSTLIDAFCK 347
Query: 277 EGDIGGAENFIELLNDKGFIPTDL 300
EG + GA + + G +P +
Sbjct: 348 EGMMQGAIKLLXDMRRTGLLPNEF 371
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 12/257 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + + +N+++ Y + + L+HEM E G+ + TY T + + D
Sbjct: 388 GCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAA 447
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK---KSEEQIKGAKVNSA-- 122
+L M + V + V T+ +G G L AL M K KS+ I ++ +
Sbjct: 448 QDLLQEMISS-GVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVE 506
Query: 123 -----YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN+++ GK + ++E + + + Y ++I L K L+ A ++
Sbjct: 507 PDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 566
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+ S++ D N LI YC+ G+++ L +G ++ L G+R+
Sbjct: 567 FDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRK 626
Query: 237 NSQIHKAVEAMKKVLAA 253
I A++ ++++++
Sbjct: 627 VDNIDGALDIFQEMISS 643
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 24/295 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + +TV Y+SM+ + K + + + + G + D T+ T ++ Y A
Sbjct: 348 EMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAK 407
Query: 63 D-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+GI + M EA + + + Y T+ +G+ +VG L+ A +L++ V +
Sbjct: 408 RVDDGIKLLHEMTEA--GLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVT 465
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKK------AVKVLN------NGYRNVISSLLKLDD 169
N +L GK D L +++ +K A + N Y +I L+
Sbjct: 466 C-NTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGK 524
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
AE+++EE + + DT + +ID C+ L++A + + K V ++
Sbjct: 525 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNT 584
Query: 230 LATGYRQNSQIHKAVE-----AMKKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
L TGY + + +E + ++A Y TL+ V+++ LD F++
Sbjct: 585 LITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQE 639
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 116/286 (40%), Gaps = 34/286 (11%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V YN M+ + +G + + L+ EM E I D T+ ++A+ +++
Sbjct: 289 VTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDE 348
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGK 132
M ++ V Y+++ +G+ K LD A M + KG + +N ++ Y +
Sbjct: 349 MLPR-SIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPT--KGCSPDIITFNTLIAGYCR 405
Query: 133 YGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
+ DD +++ +A V N Y +I ++ DL +A+ + +E S +C +
Sbjct: 406 AKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVT 465
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
N L+D C NG L+ A ++ KA++ K +
Sbjct: 466 CNTLLDGLCDNGKLKDA-----------------------------LEMFKAMQKSKMDI 496
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A + +P V++ + +EG AE E + +G +P
Sbjct: 497 DASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVP 542
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 133/301 (44%), Gaps = 12/301 (3%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V + +++ + G + +L+ M E+G+ ++ TY T + D +L
Sbjct: 182 VVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLR 241
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
ME ++ + VIY T+ +G K G A + + +E+ + + YN ++ +
Sbjct: 242 KMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVT-YNCMINGFCI 300
Query: 133 YGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
G+ D ++ E+ ++ + + +I++ +K AE++++E +++ T
Sbjct: 301 SGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVT 360
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
+ +ID +C+ L+ AE++ KG + ++ L GY + ++ ++ + ++
Sbjct: 361 YSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT 420
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP-----TDLQDKLLD 306
A LV + +L + F GD+ A++ ++ + G P L D L D
Sbjct: 421 EA--GLVANTITYTTL---IHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCD 475
Query: 307 N 307
N
Sbjct: 476 N 476
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/235 (19%), Positives = 90/235 (38%), Gaps = 47/235 (20%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + GL T+ Y +++ + + G+ L+ EM +G+ + T T L D
Sbjct: 416 LHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCD 475
Query: 61 ASDHEGIDKILTMME--------------ADPNV-------------------------- 80
+ ++ M+ +P+V
Sbjct: 476 NGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEM 535
Query: 81 -----ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
D + Y+++ +G K LD+A M + V + +N ++T Y K G
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVT-FNTLITGYCKAGM 594
Query: 136 KDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
DD L ++ E+ ++ + Y +I K+D+++ A IF+E S + DT
Sbjct: 595 VDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDT 649
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 118/290 (40%), Gaps = 41/290 (14%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL T V +N+++ Y K+GN ++ L M EN + D +TY ++ +
Sbjct: 255 GLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDA 314
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+K+ M D + + V + T+ NG+ G D + + Y +L
Sbjct: 315 NKLFLEM-CDRGLVPNDVTFTTLINGHCVTGRADLGMEI----------------YQQML 357
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+ G K DV+ Y +I+ L K+ DL A+K+ E + L
Sbjct: 358 ----RKGVKPDVIT---------------YNTLINGLCKVGDLREAKKLVIEMTQRGLKP 398
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D LID C+ G LE A + +G E+ ++ L +G+ + Q+ +A +
Sbjct: 399 DKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTL 458
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+++L A KP + + F +GD+ ++ + G +P
Sbjct: 459 REMLEA-----GIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVP 503
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 15/250 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + N ++ + + G E+ +LM+EM+ GI + +TY ++ E
Sbjct: 495 GILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERA 554
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
++ +M NV V+Y+T+ +G+ K KAL ML +I AY +++
Sbjct: 555 LELFPLM-LKRNVLPSVVVYSTLIDGFAKQSNSQKAL-MLYARMLKIGVTPDMVAYTILI 612
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEW 180
+ R+ E Y K+ NG Y +VI+ ++ D+ A +F E
Sbjct: 613 NILCHRS------RMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEM 666
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L+D YC+ ++ A+ L++ K KG V ++ L +R+ +
Sbjct: 667 LQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNL 726
Query: 241 HKAVEAMKKV 250
KA+E + ++
Sbjct: 727 DKALEMLNEM 736
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 87/235 (37%), Gaps = 48/235 (20%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS----- 62
GL +T N +LK + E L SL EM+ G + +TY ++ Y +
Sbjct: 209 GLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEAD 268
Query: 63 -DHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D +IL ME + P V V Y+T G +VG ++ AL ++
Sbjct: 269 IDTRQATEILEEMERNGESPTV----VTYSTYIYGLCRVGYVESALDFVRSL------IS 318
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N NV Y +I L K +L+ A K+ E
Sbjct: 319 ANGLVNVYC-----------------------------YNAIIHGLCKKGELDEALKVLE 349
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E +S + D + LI +C+ G +EK L+ K E + S+ L G
Sbjct: 350 EMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHG 404
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 82/405 (20%), Positives = 148/405 (36%), Gaps = 110/405 (27%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLD-------SLMHEMEENG-----ITYDR 48
++M+ G Y M+ Y K GNF + D ++ EME NG +TY
Sbjct: 237 FEEMKSTGPPPNVFTYTIMMNFYCK-GNFGEADIDTRQATEILEEMERNGESPTVVTYST 295
Query: 49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK 108
Y Y Y +++ +D + +++ A N ++ Y + +G K G LD+AL +L
Sbjct: 296 YIYGLCRVGYVESA----LDFVRSLISA--NGLVNVYCYNAIIHGLCKKGELDEALKVL- 348
Query: 109 KSEEQIKGAKVNS---AYNVILTLYGKYGKKDDVLRIWE--------------------L 145
E++K ++ Y++++ + K G + L + E L
Sbjct: 349 ---EEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGL 405
Query: 146 YKKAVKVLN----------------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
KK + ++ Y +I DL+SA K+ EE L D
Sbjct: 406 CKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDP 465
Query: 190 R------------------------------IP-----NFLIDVYCRNGLLEKAENLVNH 214
+P N +ID +CR G +E+A NL+N
Sbjct: 466 SNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNE 525
Query: 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK--KVLAAYQTLVKWK--PSVESLAAC 270
+ +G + N+ I++ + K + L + ++K PSV +
Sbjct: 526 MQTQG---------IFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTL 576
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNL 315
+D F + + A + G P + +L N+ +S +
Sbjct: 577 IDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRM 621
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 5/245 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM D G +VY S+++ ++K G E + EM G + D T + A
Sbjct: 253 EKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKA 312
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E + + A + D Y+ + +G K GL ++ + +EQ G +++
Sbjct: 313 GETEKGRALFREINAHGFIP-DARSYSILIHGLVKAGLANETYELFYAMKEQ--GCVLDT 369
Query: 122 -AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN ++ + K GK + ++ E K K Y +VI L K+D L+ A +FEE
Sbjct: 370 HAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 429
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S + + + + LID + + G +++A ++ KG +V +W L + +
Sbjct: 430 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 489
Query: 240 IHKAV 244
I++A+
Sbjct: 490 INEAL 494
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
Y T+ GYG G D+A +L++ ++ KG+ + AYN ILT GK + ++ LRI+E
Sbjct: 93 YNTMIMGYGSAGKFDEAYGLLER--QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEE 150
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
K+ Y +I L + L +A +I ++ E L + N +ID C+ L
Sbjct: 151 MKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKL 210
Query: 206 EKAENL 211
E+A ++
Sbjct: 211 EEACSI 216
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 111/267 (41%), Gaps = 46/267 (17%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G T YN+++ + K+G K L+ EM+ G TY + + A
Sbjct: 360 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAK--- 416
Query: 64 HEGIDKI----LTMMEADPN-VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ----- 113
ID++ + EA N + L+ V+Y+++ +G+GKVG +D+A ++++ ++
Sbjct: 417 ---IDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 473
Query: 114 -----------IKGAKVNSA------------------YNVILTLYGKYGKKDDVLRIW- 143
+K ++N A Y++++ + K + W
Sbjct: 474 VYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQ 533
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
E+ K +K Y +IS L K ++ A +F +++ D+ N +I+
Sbjct: 534 EMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSAN 593
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYL 230
A L +LKG IH K+ L
Sbjct: 594 KAMDAYALFEETRLKGCNIHTKTCVVL 620
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 112/264 (42%), Gaps = 21/264 (7%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ++ + + G + +ME G+ + T + A E I M+
Sbjct: 162 YNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMD 221
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE--QIKGAKVNSAYNVILTLYGKY 133
D + V ++++ +G GK G +D A ++ +K + + GA V Y ++ + K
Sbjct: 222 -DKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIV---YTSLIRSFFKC 277
Query: 134 GKKDDVLRIWELYKKAVKV-------LNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
G+K+D +I YK+ V L N Y + + K + E +F E +
Sbjct: 278 GRKEDGHKI---YKEMVHTGCSPDLTLINTYMDCV---FKAGETEKGRALFREINAHGFI 331
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D R + LI + GL + L K +G + ++ + G+ ++ +++KA +
Sbjct: 332 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 391
Query: 247 MK--KVLAAYQTLVKWKPSVESLA 268
++ KV T+V + ++ LA
Sbjct: 392 LEEMKVKGHPPTVVTYGSVIDGLA 415
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 20/130 (15%)
Query: 95 GKVGL-------------LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLR 141
GKVGL LD+A+ + ++ E+ K AYN ++ YG GK D+
Sbjct: 53 GKVGLMLLFPWVLCKANRLDEAVELFEQLEQNRK-VPCAYAYNTMIMGYGSAGKFDEAYG 111
Query: 142 IWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP--NFLIDV 198
+ E K + + Y +++ L K +E A +IFEE + A+ +P N LID+
Sbjct: 112 LLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV---PNVPTYNILIDM 168
Query: 199 YCRNGLLEKA 208
CR G L A
Sbjct: 169 LCREGKLNAA 178
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 130/297 (43%), Gaps = 10/297 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ +G + V YNS++ Y K G+ E+++ L+ EM ++G D TY ++ ++
Sbjct: 225 RMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFG 284
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
E M+ VA + V ++T + + K GL+ +A+ + ++ +++G N
Sbjct: 285 RMEKAYSYFGEMKRQGVVA-NVVTFSTFVDAFCKEGLVQEAMKLF--AQMRVRGMMPNEF 341
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++ K G+ DD + + E+ + + Y ++ L K + A+ +
Sbjct: 342 TYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLM 401
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E + + + LI + N E+A +L+N K KG E+ V + L G ++ ++
Sbjct: 402 ERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKV 461
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A + K+ +P+ +D G A + + D GF P
Sbjct: 462 DEAKSLLHKMAGC-----GLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQP 513
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 130/300 (43%), Gaps = 12/300 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR G A V YN+++ + K G EK S EM+ G+ + T+ T + A+
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK 317
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ K+ M + ++ Y ++ +G K G LD A+ +L + Q V
Sbjct: 318 EGLVQEAMKLFAQMRVRGMMPNEFT-YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 376
Query: 121 SAYNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ Y V+ L GK + D+VL + E + VK Y +I ++ E A +
Sbjct: 377 T-YTVMVDGLCKEGKVAEADNVLSLME--RGGVKANELLYTTLIHGHFMNNNSERALDLL 433
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ +++ + D + LI C++ +++A++L++ G + + + +
Sbjct: 434 NQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKA 493
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +AV + K+L + ++P+V + A +D G I A + + + G P
Sbjct: 494 GKESEAVALLHKILDS-----GFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDP 548
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 17/259 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M GL V Y M+ K G + D+++ ME G+ + Y T + +
Sbjct: 363 LDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFM 422
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
++ E +L M+ + + LD +Y T+ G K +D+A ++L K G + N
Sbjct: 423 NNNSERALDLLNQMK-NKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGC--GLRPN 479
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR-NVISSLLKLDDLESAEKI-- 176
+ Y I+ K GK+ + + + K+L++G++ NV++ +D L A I
Sbjct: 480 TVIYTTIMDALFKAGKESEAVALLH------KILDSGFQPNVVTYCALIDGLCKAGSISE 533
Query: 177 ----FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
F + L + + LID +C+ G L KA +L+N KG + + L
Sbjct: 534 AISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLID 593
Query: 233 GYRQNSQIHKAVEAMKKVL 251
GY + + + A K++
Sbjct: 594 GYMKQANLQDAFALKTKMI 612
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KMR+LGL Y +++ + K G+ K LM+EM + G++ D+ Y + + Y +
Sbjct: 540 KMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQA 599
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
+ + + T M + + LD Y +G+ + ++ +A +L ++ G +
Sbjct: 600 NLQDAFALKTKM-IESGLQLDLYCYTCFISGFCNMNMMQEARGVL----SEMIGTGITPD 654
Query: 121 -SAYNVILTLYGKYGKKDD 138
+ YN ++ Y K G ++
Sbjct: 655 KTVYNCLIRKYQKLGNMEE 673
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M D G++ VVY S++ Y K N + +L +M E+G+ D Y Y +S + +
Sbjct: 573 MNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCN 632
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + +L+ M + D +Y + Y K+G +++A ++ + E +
Sbjct: 633 MNMMQEARGVLSEM-IGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESVLSSC 688
>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 126/287 (43%), Gaps = 15/287 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y++ + + K+G + H M+ + ++ + T+ + Y A D E +
Sbjct: 163 VVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYK 222
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYG 131
M ++L+ V Y + +G+ K G + +A M + E + NS Y I+ +
Sbjct: 223 EMRR-VRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVED--RVEPNSLVYTTIIDGFF 279
Query: 132 KYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
+ G D+ ++ + ++ + +++ Y +IS L L+ A +I E+ E L D
Sbjct: 280 QRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMV 339
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
I +++ Y ++G ++ A N+ + +G E V + + G +N Q+H+A+
Sbjct: 340 IFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAI------ 393
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Y + K + ++ +D EGD E +++ G +P
Sbjct: 394 --VYFCIEKANDVMYTVL--IDALCKEGDFIEVERLFSKISEAGLVP 436
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 101/245 (41%), Gaps = 17/245 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+NS++ K G + + ++H M G D +Y + + + D +L +
Sbjct: 59 FNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLR 118
Query: 76 ADPNVAL--DWVIYATVGNGYGKVGLLDKAL----AMLKKSEEQIKGAKVNSAYNVILTL 129
A D V + ++ NG+ K+ +LD+ MLK + Y+ +
Sbjct: 119 ASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNV------VTYSTWIDT 172
Query: 130 YGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
+ K G+ L+ + K+ A+ + +I K DLE A +++E + +
Sbjct: 173 FCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLN 232
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEA 246
LID +C+ G +++AE + + ++ + S Y + G+ Q A++
Sbjct: 233 VVTYTALIDGFCKKGEMQRAEEM--YSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKF 290
Query: 247 MKKVL 251
+ K+L
Sbjct: 291 LAKML 295
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 45/256 (17%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++MR + ++ V Y +++ + K G ++ + + M E+ + + Y T + +
Sbjct: 222 KEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQR 281
Query: 62 SDHEGIDKILTMM--------------------------EAD--------PNVALDWVIY 87
D + K L M EA ++ D VI+
Sbjct: 282 GDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIF 341
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYK 147
T+ N Y K G + A+ M K E+ V A + ++ K G+ + + ++ +
Sbjct: 342 TTMMNAYFKSGRMKAAVNMYHKLIERGFEPDV-VALSTMIDGIAKNGQLHEAI-VYFCIE 399
Query: 148 KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK 207
KA V+ Y +I +L K D E++F + L D + I C+ G
Sbjct: 400 KANDVM---YTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQG---- 452
Query: 208 AENLVNHEKLKGREIH 223
NLV+ KLK R +
Sbjct: 453 --NLVDAFKLKTRMVQ 466
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 138/322 (42%), Gaps = 51/322 (15%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI-L 71
T Y ++ + K G + SL++EM++ I D +TY T + A S E + + L
Sbjct: 213 TRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFL 272
Query: 72 TMMEAD--PNVAL-------------------------------DWVIYATVGNGYGKVG 98
M+ + PNV D + Y + +GYG G
Sbjct: 273 EMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRG 332
Query: 99 LLDKAL----AMLKKS-EEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKV 152
+D+A +M+ KS E I +YN+++ Y + K D+ +++ E+ +K +K
Sbjct: 333 QVDRAREIFDSMINKSIEPDI------ISYNILINGYARQKKIDEAMQVCREISQKGLKP 386
Query: 153 LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
++ L +L +SA+ F+E S D L+ Y +NGL+E+A +
Sbjct: 387 SIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHF 446
Query: 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272
+ + + + +++ + + G +N ++ KA +K+ L+ P V + A +
Sbjct: 447 HKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKL-----PLIGLHPDVITYTAMIS 501
Query: 273 YFKDEGDIGGAENFIELLNDKG 294
+ EG + A++ + + D G
Sbjct: 502 GYCQEGLLDEAKDMLRKMEDNG 523
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 42/291 (14%)
Query: 43 GITYDRYTYCTRLSA-YADASDHEGID---KILTMMEADPNVALDWVIYATVGNGYGKVG 98
GI Y+ T+ T + +A+ + + K++ +PN V+Y TV NG K G
Sbjct: 137 GIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPN----EVMYGTVMNGLCKKG 192
Query: 99 LLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNG 156
KA +L+ E+ K N+ Y +++ + K G D + E+ +K++
Sbjct: 193 HTQKAFDLLRLMEQ--GSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFT 250
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +I +L KL E+ +F E + + N +ID C+ G +E AE ++ +
Sbjct: 251 YSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMI 310
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVE--------AMKKVLAAYQTLVK--------- 259
KG + V ++ + GY Q+ +A E +++ + +Y L+
Sbjct: 311 EKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKID 370
Query: 260 -------------WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KPS+ + L + G A+NF + + G IP
Sbjct: 371 EAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIP 421
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 38/164 (23%)
Query: 1 MQKMRDL---GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
MQ R++ GL + V N +L ++ G + + EM G D YT+CT L
Sbjct: 373 MQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGG 432
Query: 58 Y------ADASDH--------------------EGI------DKILTMMEADPNVAL--D 83
Y +A H +G+ DK E P + L D
Sbjct: 433 YFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPD 492
Query: 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ Y + +GY + GLLD+A ML+K E+ A N YNVI+
Sbjct: 493 VITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLAD-NRTYNVIV 535
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y V++ L K + A + E + +TR +ID +C++G+L+ A +L+N K
Sbjct: 181 YGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMK 240
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
K + ++ L + SQ + L + P+V + + +D
Sbjct: 241 QKSIPPDIFTYSTLIDALCKLSQWENV-----RTLFLEMIHLNIYPNVCTFNSVIDGLCK 295
Query: 277 EGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY 322
EG + AE + + +KG P + ++ + + ++ RE++
Sbjct: 296 EGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIF 341
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 138/330 (41%), Gaps = 29/330 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ G+ R YN+++ + G + + EM+ G D+ T+ + L Y A
Sbjct: 246 MKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARK 305
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
HE +L ME P+V V Y ++ + Y K GLL++AL + K E + +G K +
Sbjct: 306 HEEAIGVLKRMENAGCTPSV----VTYNSLISAYVKDGLLEEALEL--KQEMEFRGMKPD 359
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS--SLLKLDDLES----A 173
Y +++ + GK D L Y + V+ N N+ + +L+KL +
Sbjct: 360 VVTYTTLISGLDRVGKIDAAL---ATYSEMVR--NGCSPNLCTYNALIKLHGVRGKFTEM 414
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
+F++ S D N L+ V+ +NGL + + K G ++ L +
Sbjct: 415 MAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISS 474
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
Y + +A+E K+++ A P + + A L G AE + D+
Sbjct: 475 YSRCGLFDQAMEIYKRMIEA-----GIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDR 529
Query: 294 GFIPTDLQ-DKLLDNVQNGKS--NLETLRE 320
P +L LL N K ++TL E
Sbjct: 530 DCKPDELSYSSLLHAYANAKKLDKMKTLSE 559
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 130/294 (44%), Gaps = 22/294 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + G+ YN++L + G +E+ + L EM + D +Y + L AYA+A
Sbjct: 489 KRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANA 548
Query: 62 SDHEGIDKILTMME---ADPNVALDWVI--YATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ +DK+ T+ E A+ +W++ V N + +KA L++ +
Sbjct: 549 ---KKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSL-- 603
Query: 117 AKVNSAYNVILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
+N N ++++YGK K ++VL + + + ++ Y +++ +L D E
Sbjct: 604 -DIN-VLNAMVSIYGKNKMVKKVEEVLSL--MMENSINHSAATYNSLMHMYSRLGDCEKC 659
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E I E +S + D N +I Y R G +++A L + K G + + ++
Sbjct: 660 ESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKS 719
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
Y N +A++ L Y +P+ + + L + G + A++F+
Sbjct: 720 YVANIMFEEAID-----LVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSFL 768
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 40/210 (19%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G + V YNS++ Y K G E+ L EME G+ D TY T +S
Sbjct: 313 LKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLIS---- 368
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
G +VG +D ALA SE G N
Sbjct: 369 --------------------------------GLDRVGKIDAALATY--SEMVRNGCSPN 394
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIFE 178
YN ++ L+G GK +++ +++ + A V + N + S+ + L+S +F+
Sbjct: 395 LCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFK 454
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E + + LI Y R GL ++A
Sbjct: 455 EMKKAGYIPERDTYVSLISSYSRCGLFDQA 484
>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 127/303 (41%), Gaps = 8/303 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G+ +V N+ + + EK + M+ GI + TY + Y D
Sbjct: 144 MQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHR 203
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
E ++++ M + D V Y TV K + + + +++K E+ K Y
Sbjct: 204 VEDAMELISEMPLK-GCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMED-TKLLADQVTY 261
Query: 124 NVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N ++ + K+ D+ L+ + E K+ +V GY ++ S K ++ A++I E +
Sbjct: 262 NTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFT 321
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D +I+ + + G + +A ++ G + + S+ G Q +
Sbjct: 322 RGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSE 381
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD 302
A E MK + W P+ + + + F+ EG + A + + + KGF PT ++
Sbjct: 382 AREMMKASEEQW-----WTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEI 436
Query: 303 KLL 305
LL
Sbjct: 437 NLL 439
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 15/203 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T V N +L+ + G ++ M E G + + T + + D E
Sbjct: 428 GFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAA 487
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA----LAMLKKSEEQIKGAKVNSAY 123
+L M N D V Y T+ + GK G +++A L MLKK I V Y
Sbjct: 488 LSLLDDMYLS-NKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKG---IDPTPVT--Y 541
Query: 124 NVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
++ YG+ G+ +D+L + + L ++ + + VI L +LE+A+K+ +
Sbjct: 542 RTVIHRYGQIGRVEDLLNLLDKMLTRQECR---TAFNQVIEKLCTFGNLEAADKLLGKVL 598
Query: 182 SQALCYDTRIPNFLIDVYCRNGL 204
A D + L++ Y R G+
Sbjct: 599 RTASRIDANTCHVLMESYLRKGI 621
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 136/326 (41%), Gaps = 18/326 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M L + + +N M+ + K G +K + ME +G+ + TY T + Y +
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E D ILT M+ + D Y ++ +G K G L++A + EE ++ SA
Sbjct: 271 RVEAADAILTTMKRQ-KIEPDSFTYGSLISGMCKQGRLEEASKIF---EEMVQKGLRPSA 326
Query: 123 --YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++ + G D E+ KK + + Y ++I +L + AE + +E
Sbjct: 327 VIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + + D N LI+ YCR +KA L + G + K++ L + ++
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNR 446
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A + KK+ T P A +D ++ GA ELL D +
Sbjct: 447 MKEADDLFKKI-----TSEGVLPDAIMFNALIDGHCSNSNVKGA---FELLKDMDRMKVP 498
Query: 300 LQDKLLDNVQNG---KSNLETLRELY 322
+ + + G + +E REL+
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELF 524
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 130/306 (42%), Gaps = 20/306 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA-YA 59
++M GL + V+YN+++ + GN + + EM + GI+ TY + + A +
Sbjct: 314 FEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFM 373
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E I + E ++ D + Y + NGY + KA + +++ + +
Sbjct: 374 EQRTDEAECMIKEIQEK--GISPDAITYNILINGYCRCANAKKAFLL----HDEMLASGI 427
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNNG--YRNVISSLLKLDDLESAEK 175
+L KK+ + +L+KK VL + + +I +++ A +
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFE 487
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ ++ + + D N ++ +CR G +E+A L + K +G + S+ L +GY
Sbjct: 488 LLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYS 547
Query: 236 QNSQIHKAVEAMKKVL--AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+ I A ++L T++ + V+ L EGD+ AE ++ + K
Sbjct: 548 RRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCK-----NQEGDL--AEELLKEMVSK 600
Query: 294 GFIPTD 299
G P D
Sbjct: 601 GMTPDD 606
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 105/234 (44%), Gaps = 3/234 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++++++ G++ + YN ++ Y + N +K L EM +GI + TY + L +
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSK 443
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + D + + ++ V D +++ + +G+ + A +L K +++K
Sbjct: 444 KNRMKEADDLFKKITSE-GVLPDAIMFNALIDGHCSNSNVKGAFELL-KDMDRMKVPPDE 501
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N I+ + + GK ++ ++ E+ ++ +K + + +IS + D++ A ++ E
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNE 561
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
N L+ C+N + AE L+ KG +++ L G
Sbjct: 562 MLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEG 615
>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
Length = 597
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 19/238 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ +G Y +++ + + G EK + + EM++ G D Y Y + AY+
Sbjct: 300 FREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSR 359
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A +G +I ++ME +P D Y + + +G+ GL +A A ++ ++Q
Sbjct: 360 AGLPQGASEIFSLMEHMGCEP----DRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRP 415
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWE----LYKKAVKVLN---NGYRNVISSLLKLDDL 170
+ S + ++L+ + + G +V R E L+K ++ N N +LDD+
Sbjct: 416 TMKS-HMLLLSAHARSG---NVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDM 471
Query: 171 ESAEKIFEEWESQ-ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
E E + A DT N +++ Y R G L++ E +G V +W
Sbjct: 472 ERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTW 529
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/334 (19%), Positives = 130/334 (38%), Gaps = 49/334 (14%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y +L+ Y +G + + ++ EM+ NGI
Sbjct: 209 TYALLLRAYCGSGQLHRAEGVISEMQRNGI------------------------------ 238
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKY 133
P A +Y +G K +KA+ + ++ +++ + N+ Y +++ +YGK
Sbjct: 239 ---PPTA---TVYNAYLDGLLKARCSEKAVEVYQRMKKE--RCRTNTETYTLMINVYGKA 290
Query: 134 GKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ LR++ E+ K Y ++++ + E AE++FEE + D
Sbjct: 291 NQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 350
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
N L++ Y R GL + A + + + G E S+ L + + +H+ E A
Sbjct: 351 NALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAF-GRAGLHQEAE------A 403
Query: 253 AYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQN 310
A+Q L + +P+++S L G++ E + L+ G P + N
Sbjct: 404 AFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYG 463
Query: 311 GKSNLETLRELYGNSLAGNEETLSGPEGDTSDLI 344
L+ + L+ G+ P+ T +++
Sbjct: 464 RAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVM 497
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 9/216 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ G+ T VYN+ L K EK + M++ + TY ++ Y
Sbjct: 230 ISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGK 289
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A+ ++ M++ PN+ Y + N + + GL +KA + ++ ++
Sbjct: 290 ANQPMSSLRVFREMKSVGCKPNI----CTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 345
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL-ESAEKI 176
V AYN ++ Y + G I+ L + + N++ L + AE
Sbjct: 346 DVY-AYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAA 404
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
F+E + Q + + L+ + R+G + + E ++
Sbjct: 405 FQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVM 440
>gi|2191192|gb|AAB61077.1| similar to N. tabacum membrane-associated salt-inducible protein
(PID:g473874) [Arabidopsis thaliana]
Length = 934
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 4/213 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ LG V Y+S++ L K G++EK L +M GI YT T LS Y
Sbjct: 309 EMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTE 368
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
++ + ME + + D VI + YGK+GL A +M +++ E++
Sbjct: 369 NYPKALSLFADMERN-KIPADEVIRGLIIRIYGKLGLFHDAQSMFEET-ERLNLLADEKT 426
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y + ++ G L + E+ K + + + Y ++ K+ +++ AE+ F
Sbjct: 427 YLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRALS 486
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
L D N ++++Y R L EKA+ +
Sbjct: 487 KTGLP-DASSCNDMLNLYTRLNLGEKAKGFIKQ 518
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 11/232 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G+ + +ML LYYKT N+ K SL +ME N I D + Y
Sbjct: 345 MRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGL 404
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---N 120
+ E N+ D Y + + G + KAL ++ E +K +
Sbjct: 405 FHDAQSMFEETE-RLNLLADEKTYLAMSQVHLNSGNVVKALDVI----EMMKTRDIPLSR 459
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V+L Y K D + K + ++++ +L+ E A+ ++
Sbjct: 460 FAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQI 519
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
+ +D + + VYC+ G++ +A++L+ GRE VK ++ T
Sbjct: 520 MVDQVHFDIELYKTAMRVYCKEGMVAEAQDLIVK---MGREARVKDNRFVQT 568
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 29/233 (12%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+T VYN ML K K+ L EM E G+ + +TY +S+YA E K
Sbjct: 248 STSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAF 307
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV--ILTL 129
M++ V + V Y++V + K G +KA+ + + Q V S Y +L+L
Sbjct: 308 GEMKSLGFVP-EEVTYSSVISLSVKAGDWEKAIGLYEDMRSQ---GIVPSNYTCATMLSL 363
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRN------VISSLL-----KLDDLESAEKIFE 178
Y K E Y KA+ + + RN VI L+ KL A+ +FE
Sbjct: 364 YYK----------TENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGLFHDAQSMFE 413
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
E E L D + + V+ +G + KA +++ E +K R+I + + Y+
Sbjct: 414 ETERLNLLADEKTYLAMSQVHLNSGNVVKALDVI--EMMKTRDIPLSRFAYIV 464
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
++ L + VVY +L+LY + G + + EM E G D T L YA
Sbjct: 170 VKQLSYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGR 229
Query: 64 HEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAM-LKKSEEQIKGAKVN 120
H +LT +A + + L +Y + + K K + + L+ EE + +
Sbjct: 230 HSA---MLTFYKAVQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFT 286
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++++ Y K G K++ L+ + E+ Y +VIS +K D E A ++E+
Sbjct: 287 --YTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYED 344
Query: 180 WESQAL 185
SQ +
Sbjct: 345 MRSQGI 350
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN M+K+ + ++D L+ ME NG D TY T + YA++S +K +T+++
Sbjct: 778 YNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVK 837
>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Glycine max]
Length = 875
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 130/316 (41%), Gaps = 47/316 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+++M G + YNS+LK G ++ L+ EME GI D YTY T + A
Sbjct: 283 LEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLAEMEWKGIGRDVYTYNTYVDALCK 342
Query: 60 ----DASDHEGIDKILTMMEADPNVA-------------------------------LDW 84
D + H ID + PNV LD
Sbjct: 343 GGRMDLARH-AIDVEMPAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDR 401
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEE-QIKGAKVNSAYNVILTLYGKYGKKDDVLRIW 143
V Y T+ Y +G ++A+ K+ E IK V YN ++ YG++ K +V +++
Sbjct: 402 VSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVV--TYNALIEGYGRHNKYVEVRKLF 459
Query: 144 ELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
+ KA ++ N Y +I K A ++ E + + + D + LID C+
Sbjct: 460 D-EMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCK 518
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
NGL+E + L++ KG +V ++ + +R Q+ A+ A + + K
Sbjct: 519 NGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFRIGQQLPALECAVDTSFQANEHQI--K 576
Query: 262 PSVESLAACLDYFKDE 277
PS L+A F+D+
Sbjct: 577 PSSSRLSA--GNFQDQ 590
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 6/254 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G A ++Y S++ L + TG + + M E G D TY T + ++
Sbjct: 561 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 620
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +IL +M A V D Y ++ +GY K+ +D+A + + G K N
Sbjct: 621 IGNVEAAGEILELM-AKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVAS--GIKPN 677
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ +NV++ K GK D +++ L K V Y +I L K + A F
Sbjct: 678 AVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQF 737
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + + + LI + G + +A+ LV G V+++ L TG +
Sbjct: 738 QEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS 797
Query: 238 SQIHKAVEAMKKVL 251
S + A + ++++
Sbjct: 798 SMVDTAWDVFQEMM 811
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 129/319 (40%), Gaps = 37/319 (11%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS---DHE 65
+A + V YNS++ Y K G + L+ +M E D TY ++ ++ A+ D
Sbjct: 260 VATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDAL 319
Query: 66 GIDKILTMMEADPNVA-------------------------LDWVIYATVGNGYGKVGLL 100
+ K+L+ PN A LD + Y TV G +
Sbjct: 320 ELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRI 379
Query: 101 DKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYR 158
D+A + +K + G N AY ++ K G+ +D L+ +E + + Y
Sbjct: 380 DEACELFEKL--KTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYT 437
Query: 159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218
VI L K L A K+FE+ + DT LID + + +++A L++ K
Sbjct: 438 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK 497
Query: 219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG 278
G E ++ + G+ + I++A K+V+A + +P + + L Y+ +G
Sbjct: 498 GPEPTAVTYGSIVHGFCKLDMINEA----KEVIAQMRER-GCEPGLFIFTSLLSYYLSKG 552
Query: 279 DIGGAENFIELLNDKGFIP 297
A + + +G P
Sbjct: 553 RAEEAYQVLTEMTARGCAP 571
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 120/290 (41%), Gaps = 44/290 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M +G T V YN+++ ++ + M +NG D + T + + A
Sbjct: 45 EMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAG 104
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-- 120
+ +L +A D +Y +V +GY K G LD +L EE + +
Sbjct: 105 QPQVGHMLLN--QALKRFRPDVFLYTSVIHGYCKAGDLDTGFKIL---EEMLAAGCIPDA 159
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA------------VKVLNN------------- 155
+AY V++ K G+ D+ ++E +K+ ++ L+N
Sbjct: 160 AAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYRE 219
Query: 156 ----GYR-------NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
GY ++I +L K ++ A +I++ ++ + N L+D YC+ G
Sbjct: 220 MIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGR 279
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
++ L+ ++++ L G+ + +++ A+E + K+L++Y
Sbjct: 280 VDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALE-LFKLLSSY 328
>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
Length = 938
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 47/308 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K +D GL V+YN + Y K GN + L++EM+ G+T D+ Y +S Y
Sbjct: 507 KFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKG 566
Query: 63 DHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + ++ M++A N+ D V Y + +G+ K GL+ + +L + +Q G + NS
Sbjct: 567 EMQNAQQVFEEMLKA--NIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQ--GLEPNS 622
Query: 122 -AYNVILTLYGKYGKKDD---------------------------VLRIW--ELYKKAVK 151
Y + + + + G + +L W Y V+
Sbjct: 623 LTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVR 682
Query: 152 VLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
V G +I+ L ++ +++ A + + + D + LI +YC+NG
Sbjct: 683 VARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGD 742
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
++KA + +G + V + L GY + ++ +A + L T + KP V
Sbjct: 743 MDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQ-----LFVQMTNLGIKPDV 797
Query: 265 ESLAACLD 272
+ LD
Sbjct: 798 IAYTVLLD 805
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 8/264 (3%)
Query: 38 EMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV 97
EM E G+ D Y + L D ++ IL + + V ++ + Y V +G K
Sbjct: 367 EMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINRE-KVPVEAMAYNMVMDGLCKE 425
Query: 98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNG 156
LD+A +L+ Q V Y+ ++ Y K G + + +E + ++ +
Sbjct: 426 MRLDEAEKLLENKARQGSNPDV-YGYSYLIRSYCKMGNLINAVDHYEAMVSHGIETNCHI 484
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
++ KL A F +++ L D I N +D YC+NG + +A L+N K
Sbjct: 485 VSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMK 544
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
G + L +GY ++ A + +++L A +P + + F
Sbjct: 545 YGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKA-----NIEPDIVTYNILASGFCK 599
Query: 277 EGDIGGAENFIELLNDKGFIPTDL 300
G + + ++ + D+G P L
Sbjct: 600 SGLVMEVFDLLDRMADQGLEPNSL 623
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 136/327 (41%), Gaps = 30/327 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY-- 58
+ +M D GL ++ Y + + + GN + + L + +EE GI + Y + + Y
Sbjct: 610 LDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLL 669
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ +DH +L + A +D + + N +VG + A + K E
Sbjct: 670 SGWTDHA---YMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPD 726
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V S Y+ ++++Y + G D +W ++ ++ + V Y +++ K L+ A ++
Sbjct: 727 VIS-YSKLISIYCQNGDMDKA-HLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQL 784
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL----------VNHEKLKGR------ 220
F + + + D L+D + + L + E + NH KL
Sbjct: 785 FVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQI 844
Query: 221 EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI 280
E V + L G + + +A E ++L T P + A ++ + +G+I
Sbjct: 845 EPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLT-----PDAYAYTALINGYCSQGEI 899
Query: 281 GGAENFIELLNDKGFIPTDLQDKLLDN 307
AE+ ++ + DKG P +L +L+
Sbjct: 900 SKAEDLLQEMIDKGIEPDELTFSVLNQ 926
>gi|413917024|gb|AFW56956.1| hypothetical protein ZEAMMB73_276172 [Zea mays]
Length = 666
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 5/245 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QK RDLGL V+YN + Y K GN + L+ EM G+ D+ Y ++ Y
Sbjct: 391 FQKFRDLGLHLDGVLYNIAMDAYCKLGNMNEAVKLLTEMMAGGLVPDKIHYTCLINGYCL 450
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M + NV D V Y + +GY + G + K +L+ Q G + N
Sbjct: 451 KGEMENAWQVFEQMLKE-NVKPDVVTYNILASGYSRNGTVIKVYDLLEHMMNQ--GLEPN 507
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y V +T + + G + ++ + +K + + Y +++ L + A +F
Sbjct: 508 SLTYGVAITSFCRGGNLSEAEVLFNIVEEKGIDNIELLYSSMVCGYLHSGWTDHAHALFL 567
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
Q D + LI+ C + +E+A + + K V S+ L + Y QN
Sbjct: 568 RVAKQGNMVDQFSCSKLINGLCIDEKVEEASTVCSMMLEKNVIPDVISYSKLISAYCQNR 627
Query: 239 QIHKA 243
+H A
Sbjct: 628 DMHNA 632
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 31/219 (14%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y+ +++ Y K GN EK+ + M +GI + Y L I +++ +
Sbjct: 336 YSYLIRSYCKMGNLEKVWHYIEAMVSHGIEINCYIVGYLLQCLKKLG---MISEVIVHFQ 392
Query: 76 A--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
D + LD V+Y + Y K+G +++A+ +L E + G V + + G Y
Sbjct: 393 KFRDLGLHLDGVLYNIAMDAYCKLGNMNEAVKLLT---EMMAGGLVPDKIHYTCLING-Y 448
Query: 134 GKKDDVLRIWELYKKAVK-----------VLNNGY-RNVISSLLKLDDLESAEKIFEE-W 180
K ++ W+++++ +K +L +GY RN +++K+ DL E + +
Sbjct: 449 CLKGEMENAWQVFEQMLKENVKPDVVTYNILASGYSRN--GTVIKVYDL--LEHMMNQGL 504
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
E +L Y I +F CR G L +AE L N + KG
Sbjct: 505 EPNSLTYGVAITSF-----CRGGNLSEAEVLFNIVEEKG 538
>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 484
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 135/325 (41%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT Y+++ K+ + G F ++M GI R+ + + +
Sbjct: 103 FQKMEELGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLSEGIEPTRHXFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D + Y T+ NGY +V +D+A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVITYNTMINGYYRVKKMDEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + + D I LI C+ G L+ A +++ + L +
Sbjct: 278 LKEMVDKYMAPTDNSIFXRLISSQCKTGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KAGQHDKAVKLLDKLIEKDIILRPQSTLHMEPS--AYNPMIEYLCNNGQTAKAEALVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 LKLGVQDPTALNTLIRGHSQEGSPD 420
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 101/267 (37%), Gaps = 40/267 (14%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ + T V Y +++K Y + L+ EM+ GI + TY T L +A
Sbjct: 210 EMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAE 269
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
IL M D I+ + + K G LD A +LK I+ + A
Sbjct: 270 KMSEARSILKEMVDKYMAPTDNSIFXRLISSQCKTGNLDAAADVLKA---MIRLSVPTEA 326
Query: 123 --YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y V++ + K G+ D KAVK+ LD L + I
Sbjct: 327 GHYGVLIENFCKAGQHD----------KAVKL--------------LDKLIEKDIILR-- 360
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
L + N +I+ C NG KAE LV + LK + L G+ Q
Sbjct: 361 PQSTLHMEPSAYNPMIEYLCNNGQTAKAEALV-RQLLKLGVQDPTALNTLIRGHSQEGSP 419
Query: 241 HKAVEAMKKVL--------AAYQTLVK 259
A E +K +L +AY +LV+
Sbjct: 420 DSAFELLKIMLRRKVDSEKSAYDSLVQ 446
>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 957
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 109/221 (49%), Gaps = 12/221 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G ++YN+++ K G +++ ++L +M++ GI ++TY ++ ++ A
Sbjct: 238 MRAAGHLPDELLYNTIICALGKLGRYQESEALYLDMKKQGIVPSKFTYTIMINVWSKAGR 297
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ L M+ +A D V+Y ++ N YGK GL ++A + K+ + + +Y
Sbjct: 298 FASAAETLAEMQRSGCIA-DEVVYCSIINMYGKAGLYEEAEKIFKEM-DTLGLLSHEKSY 355
Query: 124 NVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF----E 178
+ + + G+ + L++++ + +K + + ++ +++ D+E A K++ E
Sbjct: 356 TSMAKVRAEAGRHAEALKLFDVMAEKGLLTTRMTWNTLLHCFVRIGDVEQATKVYNDMVE 415
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ + Y +I++Y + ++E AENL+ + G
Sbjct: 416 AGSANVVTYGN-----MINLYSKFQMVEDAENLLAEMRESG 451
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 4/219 (1%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G+ + Y M+ ++ K G F + EM+ +G D YC+ ++ Y A
Sbjct: 273 MKKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGKAGL 332
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKVNSA 122
+E +KI M+ ++ + Y ++ + G +AL + E KG
Sbjct: 333 YEEAEKIFKEMDTLGLLSHEKS-YTSMAKVRAEAGRHAEALKLFDVMAE--KGLLTTRMT 389
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+N +L + + G + +++ +A Y N+I+ K +E AE + E
Sbjct: 390 WNTLLHCFVRIGDVEQATKVYNDMVEAGSANVVTYGNMINLYSKFQMVEDAENLLAEMRE 449
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE 221
+ D I + +YC + +++KA +V K G E
Sbjct: 450 SGVKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDGLE 488
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 5/222 (2%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
VYN+M+KL E+ + MEENG +D T + AY + D M
Sbjct: 581 VYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTVSILVHAYTKEGRFK--DAAGLMK 638
Query: 75 EADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
A VA+D V Y T K G L AL + + +E + Y ++++L+ K
Sbjct: 639 RAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKT-YTILISLFSKL 697
Query: 134 GKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
G ++ +E+ + V Y +I + A +F+E E++ + I
Sbjct: 698 GDLGRAVQAFEVLNSSEVGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFKPNEVIY 757
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
N L+D + R GL +A L++ + KG ++ L + Y
Sbjct: 758 NNLLDAFARAGLFAEARLLLSDMRRKGCPPSSVTYLLLMSAY 799
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 116/280 (41%), Gaps = 8/280 (2%)
Query: 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP 78
M+ LY + G F+K SL + +++ Y Y T + A + E + ME +
Sbjct: 550 MINLYGRRGLFQKAKSLFNSLQKKDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENG 609
Query: 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDD 138
+ D V + + + Y K G A ++K++ +++ A AYN L K G
Sbjct: 610 RM-FDAVTVSILVHAYTKEGRFKDAAGLMKRA-KKVGVAMDTVAYNTSLKANLKSGNLKG 667
Query: 139 VLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
L ++ E+ + ++ Y +IS KL DL A + FE S + D + +I
Sbjct: 668 ALEVYGEMQEADIEPSAKTYTILISLFSKLGDLGRAVQAFEVLNSSEVGADEIAYSQMIH 727
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
Y G ++A +L + KG + + + L + + +A ++L +
Sbjct: 728 CYGCAGRPKEAADLFQEMETKGFKPNEVIYNNLLDAFARAGLFAEA-----RLLLSDMRR 782
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
PS + + + +G AE+ + L+ D+G P
Sbjct: 783 KGCPPSSVTYLLLMSAYGSKGKPADAESLLHLMQDRGLYP 822
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 5/210 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M++ + +G+A TV YN+ LK K+GN + + EM+E I TY +S ++
Sbjct: 637 MKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYTILISLFSK 696
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++ + V D + Y+ + + YG G +A + + E + KG K N
Sbjct: 697 LGDLGRAVQAFEVLNSS-EVGADEIAYSQMIHCYGCAGRPKEAADLFQ--EMETKGFKPN 753
Query: 121 SA-YNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN +L + + G + L + ++ +K + Y ++S+ AE +
Sbjct: 754 EVIYNNLLDAFARAGLFAEARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLLH 813
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ + L D R N +I Y G L A
Sbjct: 814 LMQDRGLYPDCRHYNEVIRAYGNVGKLSDA 843
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 22/232 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M LGL Y SM K+ + G + L M E G+ R T+ T L +
Sbjct: 340 FKEMDTLGLLSHEKSYTSMAKVRAEAGRHAEALKLFDVMAEKGLLTTRMTWNTLLHCFVR 399
Query: 61 ASDHEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK-------KSEE 112
D E K+ M+EA + + V Y + N Y K +++ A +L K +E
Sbjct: 400 IGDVEQATKVYNDMVEAG---SANVVTYGNMINLYSKFQMVEDAENLLAEMRESGVKPDE 456
Query: 113 QIKGAKVNSAYNVIL----TLYGKYGKKDDVLRIW---ELYKKAVKVLNNGYRNVISSLL 165
I G+ V N + T+ + K D + + E++ + + +++ LL
Sbjct: 457 YIYGSFVKLYCNSDMIDKATMVVQEMKDDGLESVCNEREMFPLGQALQSPIDTQILNQLL 516
Query: 166 ----KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ +L AE + ++ C +I++Y R GL +KA++L N
Sbjct: 517 IKRAEAGELREAELLLDKLVEAGGCIVDTAAVLMINLYGRRGLFQKAKSLFN 568
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 133/307 (43%), Gaps = 26/307 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M++ GLA V+Y ++ + + G + + EM E G D TY T L+
Sbjct: 260 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 319
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D++ T M + V D+ + T+ NGY K G ++KA+ + + ++ V
Sbjct: 320 EKMLSEADELFTEM-TERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDV- 377
Query: 121 SAYNVILTLYGKYGKKDDVLRIW------ELYKKAVK--VLNNGYRNV--ISSLLKLDDL 170
YN ++ + K + + V +W +Y + +L NGY N+ +S +L D
Sbjct: 378 VTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD- 436
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
E EK FE + C N ++ YCR G KA+ +++ LKG ++ L
Sbjct: 437 EMVEKGFE--ATIITC------NTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 488
Query: 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
G+ + + +A + K+ + P V + L+ F +G + AE + +
Sbjct: 489 INGFIKEENMDRAFALVNKMENS-----GLLPDVITYNVILNGFSRQGRMQEAELIMLKM 543
Query: 291 NDKGFIP 297
++G P
Sbjct: 544 IERGVNP 550
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 144/333 (43%), Gaps = 20/333 (6%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q++ G+ N M+ K E S + +MEE G+ D TY T ++AY
Sbjct: 86 QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC-- 143
Query: 62 SDHEGI-DKILTMMEADPNVALDWVI--YATVGNGYGKVGLLDKALAMLKKSEEQIK-GA 117
+G+ ++ +M++ L + Y + NG K G +A +L +E +K G
Sbjct: 144 --RQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL---DEMLKIGM 198
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
++A YN++L + D RI+ E+ + V + +I L K L+ A K
Sbjct: 199 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 258
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
F + ++ L D I LI +CRNG++ +A + + +G + V ++ + G
Sbjct: 259 YFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLC 318
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + +A E L T P + ++ + +G++ A E++ +
Sbjct: 319 KEKMLSEADE-----LFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNL 373
Query: 296 IPTDLQ-DKLLDNVQNGKSNLETLRELYGNSLA 327
P + + L+D G S +E + EL+ + ++
Sbjct: 374 KPDVVTYNTLIDGFCKG-SEMEKVNELWNDMIS 405
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 9/252 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
++ GL + NS+L K G + + E+ +G+ + YT ++A
Sbjct: 53 LKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQK 112
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-VNSA 122
E L+ ME + V D V Y T+ N Y + GLL++A ++ KG K
Sbjct: 113 IENTKSFLSDME-EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG--KGLKPCVFT 169
Query: 123 YNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN I L GKY + VL E+ K + Y ++ + D++ AE+IF+E
Sbjct: 170 YNAIINGLCKTGKYLRAKGVLD--EMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 227
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
SQ + D + LI + +NG L++A K G + L G+ +N
Sbjct: 228 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 287
Query: 240 IHKAVEAMKKVL 251
+ +A++ ++L
Sbjct: 288 MSEALKVRDEML 299
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 3/246 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M GL YN+++ KTG + + ++ EM + G++ D TY L
Sbjct: 155 MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCR 214
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++I M + V D V ++ + K G LD+AL + + A N
Sbjct: 215 NDNMMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA-GLAPDN 272
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ + + G + L++ E+ ++ + Y +++ L K L A+++F E
Sbjct: 273 VIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTE 332
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + D LI+ Y ++G + KA L + + V ++ L G+ + S+
Sbjct: 333 MTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSE 392
Query: 240 IHKAVE 245
+ K E
Sbjct: 393 MEKVNE 398
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 134/308 (43%), Gaps = 28/308 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M++ GLA V+Y ++ + + G + + EM E G D TY T L+
Sbjct: 417 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 476
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKV 119
D++ T M + V D+ + T+ NGY K G ++KA+ + + + +K V
Sbjct: 477 EKMLSEADELFTEM-TERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVV 535
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW------ELYKKAVK--VLNNGYRNV--ISSLLKLDD 169
YN ++ + K + + V +W +Y + +L NGY N+ +S +L D
Sbjct: 536 --TYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 593
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
E EK FE + C N ++ YCR G KA+ +++ LKG ++
Sbjct: 594 -EMVEKGFE--ATIITC------NTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 644
Query: 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289
L G+ + + +A + K+ + P V + L+ F +G + AE +
Sbjct: 645 LINGFIKEENMDRAFALVNKMENS-----GLLPDVITYNVILNGFSRQGRMQEAELIMLK 699
Query: 290 LNDKGFIP 297
+ ++G P
Sbjct: 700 MIERGVNP 707
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 141/327 (43%), Gaps = 20/327 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ N M+ K E S + +MEE G+ D TY T ++AY +G+
Sbjct: 249 GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC----RQGL 304
Query: 68 -DKILTMMEADPNVALDWVI--YATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKVNSA- 122
++ +M++ L + Y + NG K G +A +L +E +K G ++A
Sbjct: 305 LEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL---DEMLKIGMSPDTAT 361
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN++L + D RI+ E+ + V + +I L K L+ A K F + +
Sbjct: 362 YNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMK 421
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ L D I LI +CRNG++ +A + + +G + V ++ + G + +
Sbjct: 422 NAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLS 481
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
+A E L T P + ++ + +G++ A E++ + P +
Sbjct: 482 EADE-----LFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 536
Query: 302 -DKLLDNVQNGKSNLETLRELYGNSLA 327
+ L+D G S +E + EL+ + ++
Sbjct: 537 YNTLIDGFCKG-SEMEKVNELWNDMIS 562
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 9/252 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
++ GL + NS+L K G + + E+ +G+ + YT ++A
Sbjct: 210 LKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQK 269
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-VNSA 122
E L+ ME + V D V Y T+ N Y + GLL++A ++ KG K
Sbjct: 270 IENTKSFLSDME-EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG--KGLKPCVFT 326
Query: 123 YNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN I L GKY + VL E+ K + Y ++ + D++ AE+IF+E
Sbjct: 327 YNAIINGLCKTGKYLRAKGVLD--EMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 384
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
SQ + D + LI + +NG L++A K G + L G+ +N
Sbjct: 385 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 444
Query: 240 IHKAVEAMKKVL 251
+ +A++ ++L
Sbjct: 445 MSEALKVRDEML 456
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 3/246 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M GL YN+++ KTG + + ++ EM + G++ D TY L
Sbjct: 312 MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCR 371
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++I M + V D V ++ + K G LD+AL + + A N
Sbjct: 372 NDNMMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA-GLAPDN 429
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ + + G + L++ E+ ++ + Y +++ L K L A+++F E
Sbjct: 430 VIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTE 489
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + D LI+ Y ++G + KA L + + V ++ L G+ + S+
Sbjct: 490 MTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSE 549
Query: 240 IHKAVE 245
+ K E
Sbjct: 550 MEKVNE 555
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 126/301 (41%), Gaps = 14/301 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G V YN++L K + D L EM E G+ D YT+ T ++ Y S
Sbjct: 454 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY---S 510
Query: 63 DHEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKV 119
++K +T+ E N+ D V Y T+ +G+ K ++K + +I +
Sbjct: 511 KDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHI 570
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+Y +++ Y G + R+W E+ +K + ++ + + A++
Sbjct: 571 --SYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 628
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + D N LI+ + + +++A LVN + G V ++ + G+ +
Sbjct: 629 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 688
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++ +A M K++ P + + ++ + ++ A + + +GF+P
Sbjct: 689 RMQEAELIMLKMIER-----GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743
Query: 299 D 299
D
Sbjct: 744 D 744
>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 132/307 (42%), Gaps = 26/307 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M D L VYN M+ Y K G + +++HEM G+ D Y+Y + + Y
Sbjct: 372 LNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCK 431
Query: 61 AS-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA----MLKKSEEQIK 115
++ + TM+ A + Y + G+ +G +D AL MLKK
Sbjct: 432 KGLMNKAFETYNTMLRN--GFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKK------ 483
Query: 116 GAKVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
G N + + +L + K GK + L +W E + + + VI+ L K++ + A
Sbjct: 484 GIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEA 543
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
E++ ++ + D L YC+ G +++A ++N + G ++ + L TG
Sbjct: 544 EELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITG 603
Query: 234 Y---RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ +Q+ +++ + M P+ + A + + EGD+ A N +
Sbjct: 604 HFIAKQHGKVNDILFEMSN--------RGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEM 655
Query: 291 NDKGFIP 297
+KG +P
Sbjct: 656 IEKGLVP 662
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 27/344 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR LG + NS+L +TG+ ++ +M+ G D++T AY
Sbjct: 198 EMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKV- 256
Query: 63 DHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+G+ L +E V ++ V Y V NGY +VG + A ML + + G +
Sbjct: 257 --KGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRML----DSLPGRGFS 310
Query: 121 SAYNVILTLYGKYGKKDDVLR----IWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEK 175
L Y + ++ + E+ K V++ + VI+ ++ +E A +
Sbjct: 311 PNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAAR 370
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E L + + N +I+ YC+ G + +A N+++ G S+ L GY
Sbjct: 371 LLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYC 430
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA--ACLDYFKDEGDIGGAENFIELLNDK 293
+ ++KA E Y T+++ + +L A L F G I A L+ K
Sbjct: 431 KKGLMNKAFE-------TYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKK 483
Query: 294 GFIPTDLQ-DKLLDN-VQNGKSN--LETLRELYGNSLAGNEETL 333
G P ++ LLD ++GK+ L +E LA N T
Sbjct: 484 GIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTF 527
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 35/208 (16%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M +G+ V Y++++ Y + G ++ + G + + TY + Y +
Sbjct: 266 VEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCN 325
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + ++ + + + +D ++ V NGY ++G ++ A +L + V+
Sbjct: 326 EKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNE--------MVD 377
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S V L +Y ++ NGY KL + A I E
Sbjct: 378 SRLQVNLFVY--------------------NIMINGY-------CKLGRMVEAHNILHEM 410
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ DT N L+D YC+ GL+ KA
Sbjct: 411 TGVGVRPDTYSYNSLVDGYCKKGLMNKA 438
>gi|326507498|dbj|BAK03142.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1043
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 18/218 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KMR L Y+S++ L + G E L EM +GI YT + L+ Y +
Sbjct: 307 KMRMSRLVPEEATYSSLISLSARHGRGEHAVMLYEEMRAHGIVPSNYTCASLLALYDKSE 366
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D+ + + ME V +D VIY + YGK+GL D A +++ E+I A + S
Sbjct: 367 DYSKALSLFSEMERS-RVVIDEVIYGILIRIYGKIGLYDDA----QRTFEEIDNAGLLSD 421
Query: 122 --AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y + ++ G D L + + + V Y +++ + ++D+ +AE+ F
Sbjct: 422 EQTYVAMAQVHMNAGNYDRALLVMGSMRSRNVTPSLFSYSSLLRCHVVMEDIAAAEEAF- 480
Query: 179 EWESQALC----YDTRIPNFLIDVYCRNGLLEKAENLV 212
+ALC D N L+ +Y + G LEKA +
Sbjct: 481 ----RALCKYGLPDVFCCNDLLRLYFKLGQLEKASAFI 514
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 97/248 (39%), Gaps = 15/248 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM D G +R V + ++ K G F++ ++++H + D Y T + + ++
Sbjct: 706 KMADQGHSRDVVTISILVTHLTKHGKFQEAENIIHGCFNGEVELDTVVYNTFIKSMLESG 765
Query: 63 DHEGIDKILTMM--EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
I M P + I +V YG G L+KA M ++E G ++
Sbjct: 766 KLYSAASIYDRMIFSGVPRSLQTFNIMISV---YGLGGKLEKATEMFTAAQEL--GLPID 820
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKK----AVKVLNNGYRNVISSLLKLDDLESAEK 175
Y +L YGK G+ D ++ K+ K+ N N ++ DD AE
Sbjct: 821 EKLYTNMLNFYGKAGRHQDASLLFNRMKEQGIMPGKISFNSMINAYATSGLHDD---AEI 877
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+E S D+ LI Y + KAE + + G + +L +
Sbjct: 878 VFQEMHSHGQVPDSMTYLALIRAYSESRCYSKAEETIQNMLGSGITPSCPHFSHLIFAFL 937
Query: 236 QNSQIHKA 243
QI +A
Sbjct: 938 TEGQIDEA 945
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 100/219 (45%), Gaps = 10/219 (4%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
++LGL +Y +ML Y K G + L + M+E GI + ++ + ++AYA + H
Sbjct: 813 QELGLPIDEKLYTNMLNFYGKAGRHQDASLLFNRMKEQGIMPGKISFNSMINAYATSGLH 872
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-- 122
+ + + M + V D + Y + Y + KA +++ + + G+ + +
Sbjct: 873 DDAEIVFQEMHSHGQVP-DSMTYLALIRAYSESRCYSKA----EETIQNMLGSGITPSCP 927
Query: 123 -YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ ++ + G+ D+ RI ++ + V V R ++ + L+ +E +FE
Sbjct: 928 HFSHLIFAFLTEGQIDEAQRICSQMQEIGVAVDLACCRAMMRAYLEHGRVEEGISLFETT 987
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+L D+ I + +Y +G +A ++++ L G
Sbjct: 988 RG-SLKPDSFILSAAFHLYEHSGREPEAGDVLDAMGLHG 1025
>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 942
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 127/297 (42%), Gaps = 12/297 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +GL TV+ NS++ Y K G+ K ++ M++ + D Y Y T L + D
Sbjct: 387 MLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQED 446
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA- 122
K+ M + V V Y T+ VG ++ AL + + +G N
Sbjct: 447 FIKAFKLCDEMH-NKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHK--RGVAPNEVT 503
Query: 123 YNVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y +L + K G D + IW+ L K K + Y +I K++ L A++IF +
Sbjct: 504 YCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSI-TLYNTMICGFCKMEKLVQAQEIFLKM 562
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ D LID YC+ G L +A L + + G + + L TG ++ ++
Sbjct: 563 KELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEEL 622
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K + +LA + + P+V + + + + D+G + A N + DKG P
Sbjct: 623 QK----LNGLLAEMKNR-ELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAP 674
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 5/228 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M LG+ Y M+ Y K G ++ + + EME + + TY + + Y
Sbjct: 245 EQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSL 304
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D G K+L +M ++ + + Y + GY K G +++A ++ E K V+
Sbjct: 305 GDVCGAKKVLALM-SEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMME--KNLFVDE 361
Query: 122 -AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y V++ Y G+ DD LRI + + K +K+ ++I+ KL + A ++
Sbjct: 362 HVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVS 421
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+ L D+ N L+D +C+ KA L + KG V ++
Sbjct: 422 MKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTY 469
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 96/211 (45%), Gaps = 7/211 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G+ T V YN++LK + G+ E + + M + G+ + TYCT L A+
Sbjct: 456 EMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVG 515
Query: 63 DHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D+ + + + +Y T+ G+ K+ L +A + K +E +
Sbjct: 516 T---FDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKE-LGFPPDE 571
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++ Y K G + L++ ++ ++ + Y ++I+ + + ++L+ + E
Sbjct: 572 ITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAE 631
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
+++ L + LI +C G+++KA N
Sbjct: 632 MKNRELSPNVVTYGSLIAGWCDKGMMDKAYN 662
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 123/283 (43%), Gaps = 42/283 (14%)
Query: 3 KMRDL----GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
K++D+ G++ +T +YNS++ +++ +KL+ L+ EM+ ++ + TY + ++ +
Sbjct: 592 KLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGW 651
Query: 59 ADASDHE-GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAML---------- 107
D + + M+ D +A + +I + + + + G +D+A +L
Sbjct: 652 CDKGMMDKAYNAYFKMI--DKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIA 709
Query: 108 ---------KKSEEQIKGAKV---------------NSAYNVILTLYGKYGKKDDVLRIW 143
K ++ K+ N YN+ +T K DDV RI
Sbjct: 710 AHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRIL 769
Query: 144 -ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
+L K N Y ++I + + + A + ++ + L + + N LI+ C++
Sbjct: 770 SDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKS 829
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
G L++A L N KG V ++ L GY + + +A+E
Sbjct: 830 GNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALE 872
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+VYN + K+ N + + ++ ++ G D YTYC+ + A + +++ +
Sbjct: 747 IVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGK---VNEAFCL 803
Query: 74 MEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
+ N L + V+Y + NG K G LD+A + K + V + YN ++ Y
Sbjct: 804 RDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVT-YNTLIDGYC 862
Query: 132 KYGKKDDVLRI 142
K G+ + L +
Sbjct: 863 KGGRTTEALEL 873
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 118/294 (40%), Gaps = 49/294 (16%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ R+ YN M+ K G+ E SL +M+E G T D TY
Sbjct: 51 GIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTY---------------- 94
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS---AYN 124
N +D G+GK+GLLD+ + + EQ+K A + YN
Sbjct: 95 -----------NSLID---------GHGKLGLLDECICIF----EQMKDADCDPDVITYN 130
Query: 125 VILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ + K+ + + E+ +K Y I + K L+ A K F +
Sbjct: 131 ALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRV 190
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
AL + LID C+ G L +A LV G +++V ++ L G + ++ +A
Sbjct: 191 ALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEA 250
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
E + +L A P+ E+ A + F ++ A++ ++ + +K P
Sbjct: 251 EEVFRAMLNA-----GVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKP 299
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 104/237 (43%), Gaps = 15/237 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V Y ++L + G ++ + + M G+ ++ TY + + A + E
Sbjct: 226 GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYA 285
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI 126
IL M+ + + D ++Y T+ G L++A ++ + +E G N+ Y +
Sbjct: 286 KDILKEMK-EKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKES--GINTNAVIYTTL 342
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+ Y K G+ + L + E +++ L K + E A+K+F+E + +
Sbjct: 343 MDAYFKSGQATEALTLLE-----------EMLDLVDGLCKNNCFEVAKKLFDEMLDKGMM 391
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
D LID ++G L++A NL + G E+ + ++ L G + Q+ KA
Sbjct: 392 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKA 448
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 114/264 (43%), Gaps = 13/264 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-D 60
++M+D + YN+++ + K K +HEM+ NG+ + TY T + A+ +
Sbjct: 115 EQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKE 174
Query: 61 ASDHEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GA 117
E I + M PN Y ++ + K G L +AL ++ EE ++ G
Sbjct: 175 GMLQEAIKFFVDMRRVALTPN----EFTYTSLIDANCKAGNLAEALKLV---EEILQAGI 227
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
K+N Y +L + G+ + ++ + V Y ++ +K ++E A+
Sbjct: 228 KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKD 287
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
I +E + + + D + ++ C LE+A+ L+ K G + + L Y
Sbjct: 288 ILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYF 347
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVK 259
++ Q +A+ ++++L L K
Sbjct: 348 KSGQATEALTLLEEMLDLVDGLCK 371
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 109/246 (44%), Gaps = 19/246 (7%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
+A YN +L+ G+ ++ +L + + DR TY T + A + +D
Sbjct: 154 IAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLA---KQDRLD 210
Query: 69 KILTMMEADP--NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNV 125
L +++ P V D V Y + G K G +K + + K + GA+ N A YNV
Sbjct: 211 HALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKD-PGARPNLATYNV 269
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS------SLLKLDDLESAEKIFEE 179
+L K+G+ +V +WE V NN +VI+ L + D++ A +++ E
Sbjct: 270 MLDGLCKFGRFKEVGEVWERM-----VANNLQPDVITYGILIHGLCRSGDVDGAARVYSE 324
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
L D + N L+ +C+ G +++A + G +++++ + G +
Sbjct: 325 IIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGM 383
Query: 240 IHKAVE 245
+ +A+E
Sbjct: 384 VDEAIE 389
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 36/247 (14%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
++D G YN ML K G F+++ + M N + D TY + + D
Sbjct: 255 VKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGD 314
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+G ++ + + + +D +Y ++ G+ + G + +A + G + Y
Sbjct: 315 VDGAARVYSEI-IKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSA--GFAGLRNLRTY 371
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
N+++ G D+ + +W+L +K V +
Sbjct: 372 NIMIKGLFDSGMVDEAIELWDLLEKDVACIP----------------------------- 402
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
DT LI C+NG KA + ++ G+++ V S+ + G ++ A
Sbjct: 403 ----DTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDA 458
Query: 244 VEAMKKV 250
V+ +K+
Sbjct: 459 VKVYEKM 465
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 104/249 (41%), Gaps = 6/249 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y+SM+ G + +M+++G + + Y +S + +I + M
Sbjct: 442 YSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM- 500
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
AD + + Y T+ +G K +A ++ ++ E + + ++I L+ K
Sbjct: 501 ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSD-KK 559
Query: 136 KDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP-N 193
DD L IW ++ K +KV + +I L ++ A +F + + + C + N
Sbjct: 560 IDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYN 619
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA- 252
L+D G ++KA L G E + S+ G +IH+ ++ + +VL+
Sbjct: 620 TLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSR 679
Query: 253 -AYQTLVKW 260
T++ W
Sbjct: 680 GIIPTVITW 688
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 90/209 (43%), Gaps = 8/209 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA-YAD 60
KM D G + T + YN+++ K +++ S+ EM ENG T D TY + + ++D
Sbjct: 498 SKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSD 557
Query: 61 ASDHEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ ID L++ + + +D +++ + +G G +D+AL + +E+
Sbjct: 558 ----KKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPP 613
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN ++ + G D +W + + ++ Y I L D + ++
Sbjct: 614 NLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLL 673
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLE 206
+E S+ + N L+ + G ++
Sbjct: 674 DEVLSRGIIPTVITWNILVRAVIKYGPIQ 702
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 139/335 (41%), Gaps = 47/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M++ G ++YN ++ +G E + ++ +M+++ ++ + TY + YA+
Sbjct: 41 LEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYAN 100
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + K+ M+ W Y + GYG+ GL +AL + + + + AK
Sbjct: 101 AGRLQDCRKLFQEMKDKGESPNSWT-YNALIQGYGRKGLFKEALELYDEM-DGVGCAKDV 158
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-------------------------LYKKAVKVLNN 155
YN+ + +YGK G +D+ R+ + + KA ++L
Sbjct: 159 HTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILRE 218
Query: 156 ----GYRN-------VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
GYR ++SS K + A ++FE +S+ + + + ++ +Y R+GL
Sbjct: 219 MTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGL 278
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK--P 262
+A L + G + ++ L Y + +A LA +Q + K P
Sbjct: 279 YTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEA-------LACFQDMRKSGIVP 331
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ A +D + G AE + +GF+P
Sbjct: 332 DTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVP 366
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 121/298 (40%), Gaps = 49/298 (16%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLD---SLMHEMEENGITYDRYTYCTRLSAYAD 60
M+D G T V Y ++ Y + + KLD L+ M+E+G D Y ++ +
Sbjct: 9 MKD-GCEATVVTYTVIIHGYLRQKS--KLDHALRLLEVMKESGKKPDEILYNCLVNGLVN 65
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +KIL M+ D V+ + V Y + Y G L + ++ ++ KG N
Sbjct: 66 SGRLEAAEKILDDMKQD-KVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKD--KGESPN 122
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S YN ++ YG+ G L+K+A+ ++++E
Sbjct: 123 SWTYNALIQGYGRKG----------LFKEAL------------------------ELYDE 148
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ D N I +Y + GLLE E L++ KG ++ L Y + S
Sbjct: 149 MDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSY 208
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KA E ++++ T ++P++ + L + E + A E L KG +P
Sbjct: 209 FVKAHEILREM-----TEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVP 261
>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
Length = 1143
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 104/246 (42%), Gaps = 3/246 (1%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
L R VY+SM+ EK L+ +M + G+ D L+AY+ A E D
Sbjct: 788 LPRNNFVYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDAD 847
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILT 128
++ M D + LD V Y T+ + G L KA+ S + Y+ +++
Sbjct: 848 ALIHMARGD-GIPLDIVAYNTIIKADLRAGRLKKAIDTYS-SLTNLGLRPSLQTYDTMIS 905
Query: 129 LYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
++ K G+ D ++++ K A + Y +++ K E A +FE + + L
Sbjct: 906 VFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRP 965
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
N LID Y R G KAE L+ G ++ L + Y + ++A A+
Sbjct: 966 HEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENAL 1025
Query: 248 KKVLAA 253
+++ A
Sbjct: 1026 ERMQTA 1031
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 136/333 (40%), Gaps = 51/333 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+++ + V + +M+KLY + ++ +M E G T D T ++AY +
Sbjct: 613 FQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILINAYGE 672
Query: 61 A------------------SDHEGIDKI-------------LTMMEADPNVALDWVIYAT 89
A S+ I +I L + + LD Y
Sbjct: 673 ANRIEEAAGLLEASAKEDESEAAAISRIYLCLKFRLFDKATLLLHRVLESFTLDSAAYNQ 732
Query: 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSAYNVILTLYGKYGKKDDVLRIWELYKK 148
+ + K G + A ML S Q KG V +S ++ YGK G+ + + ++ K
Sbjct: 733 LTINFLKAGQVPPA-EMLH-SRMQDKGFDVEDSTLGHLIAAYGKAGRYEVLTKL----KP 786
Query: 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ N Y +++ +L+ + LE A + E+ L D+ + + L++ Y + GL+E A
Sbjct: 787 ELPRNNFVYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDA 846
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA--MKKVLAAYQTLVK--WKPSV 264
+ L++ + G + + ++ N+ I + A +KK + Y +L +PS+
Sbjct: 847 DALIHMARGDGIPLDIVAY---------NTIIKADLRAGRLKKAIDTYSSLTNLGLRPSL 897
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ + F G AE + L GF P
Sbjct: 898 QTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQP 930
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 121/282 (42%), Gaps = 48/282 (17%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+ +VY+ +LK+Y + ++ EM + + D + T + YA+A E D++L
Sbjct: 275 SVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANA---EMFDEML 331
Query: 72 TMMEA-------------------------------------DPNVALDWVIYATVGNGY 94
TM EA + +V L + YA + Y
Sbjct: 332 TMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIY 391
Query: 95 GKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAV 150
K+G ++AL + E + GA + YN++L + GK G+ D+ + ++ + ++ +
Sbjct: 392 RKLGRFEEALEVF----EAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQEL 447
Query: 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
Y ++ K D E A IF + + + D + +I +Y + GL ++AE
Sbjct: 448 CTSKYSYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEK 507
Query: 211 LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
L + VK++ +A + + ++AV+ M+++LA
Sbjct: 508 LFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLA 549
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 129/305 (42%), Gaps = 44/305 (14%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+++YN +L + K G +++ + M+ + +Y+Y T L A E I +
Sbjct: 416 SLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFS 475
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M+ +D V+Y +V + YGK GL D+A + ++ E V + ++V+ + K
Sbjct: 476 DMQMK-RCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKT-FSVMANVRLK 533
Query: 133 YGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
GK ++ +++ E L K + + + ++ ++ +K ++E A K F+ + D
Sbjct: 534 AGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESGIA-DLMA 592
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
N ++ +Y +LE A+ L ++LK I Q Q+
Sbjct: 593 YNDMLSLYAEFDMLEDAKLLF--QQLKSSSI-------------QPDQVW---------- 627
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNG 311
+ T+VK + +AA AE + + +KGF P + +L N
Sbjct: 628 --FGTMVKLYCNANMVAA-------------AEEVLRQMREKGFTPDHITQGILINAYGE 672
Query: 312 KSNLE 316
+ +E
Sbjct: 673 ANRIE 677
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 17/258 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR +GL +V+ + +L Y K G E D+L+H +GI D Y T + A
Sbjct: 815 VEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIVAYNTIIKADLR 874
Query: 61 ASD-HEGIDKI--LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + ID LT + P++ Y T+ + + K G A M K +K A
Sbjct: 875 AGRLKKAIDTYSSLTNLGLRPSLQ----TYDTMISVFAKSGRTRDAEKMFK----DLKSA 926
Query: 118 KVNS---AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESA 173
Y+ ++ Y K G + ++E K + ++ Y N+I + + A
Sbjct: 927 GFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKA 986
Query: 174 EKIFEEWESQALCYDTRIPN-FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
E++ E ++A C + + LI Y G +AEN + + V+ + +
Sbjct: 987 EQLLVEM-AKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNEVML 1045
Query: 233 GYRQNSQIHKAVEAMKKV 250
+ + +A+E+ K+
Sbjct: 1046 AFSRARLPSQAMESYLKM 1063
>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Vitis vinifera]
Length = 1071
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 4/211 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++LG V Y+ ++ L KTGN ++ L +M I YT + L+ Y
Sbjct: 322 EMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNG 381
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D+ + + ME + VA D VIY + YGK+GL + A K++ EQ+
Sbjct: 382 DYSRAVSLFSEMEKNKIVA-DEVIYGLLIRIYGKLGLYEDAEKTFKET-EQLGLLTNEKT 439
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y + ++ G + L I EL + + + Y ++ + +DL SAE F+
Sbjct: 440 YIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQALS 499
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
L D N ++++Y + LLEKA++ +
Sbjct: 500 KTGLP-DAGSCNDMLNLYIKLDLLEKAKDFI 529
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 116/296 (39%), Gaps = 16/296 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G ++Y SM+ Y K G E+ L E+ GI + + A A+ H+
Sbjct: 704 GCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEA 763
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ ++ D + LD V Y T N G L A ++ + + + YN ++
Sbjct: 764 ENVIRRSFED-GLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQT-YNTMI 821
Query: 128 TLYGKYGKKDDVLRIWELYKKA------VKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
++YG+ G+K D + E++ KA V + Y N+IS K A +F E +
Sbjct: 822 SVYGR-GRKLD--KAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQ 878
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + N +I+VY GL +A+ L G S YLA R +Q
Sbjct: 879 EEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDG--CSPDSLTYLAL-IRAYTQSF 935
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K +EA + +++ V PS L F G AE L G P
Sbjct: 936 KFLEAEETIMSMQNEGV--LPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSP 989
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 8/213 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR + + S+L LYYK G++ + SL EME+N I D Y + Y
Sbjct: 358 MRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGL 417
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+E +K E + + Y + + G +KAL ++ E ++ + +
Sbjct: 418 YEDAEKTFKETE-QLGLLTNEKTYIAMAQVHLNSGNFEKALTIM----ELMRSRNIWFSR 472
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVK--VLNNGYRNVISSL-LKLDDLESAEKIFEEW 180
+ L Y K+D+ ++ K + + G N + +L +KLD LE A+ +
Sbjct: 473 FSYIVLLQCYVMKEDLASAEATFQALSKTGLPDAGSCNDMLNLYIKLDLLEKAKDFIFQI 532
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ +D + ++ VYC+ G+L A+ L+
Sbjct: 533 RKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQ 565
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 120/296 (40%), Gaps = 18/296 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL TV YN+ + G +S+ M G+ TY T +S Y +
Sbjct: 774 GLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRK---L 830
Query: 68 DKILTMME----ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNSA 122
DK + M + V+LD Y + + YGK G +A + ++ EE IK KV +
Sbjct: 831 DKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKV--S 888
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+++ +Y G + +++ + + + Y +I + + AE+ +
Sbjct: 889 YNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQ 948
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
++ + N L+ + + G E+AE + + G V + + GY +
Sbjct: 949 NEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVE 1008
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K + +++ + + P +++ + ++K G AE ++ + G IP
Sbjct: 1009 KGITFFEQIRESVE------PDRFIMSSAVHFYKLAGKELEAEGILDSMKSLG-IP 1057
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 98/247 (39%), Gaps = 40/247 (16%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+++ G+ + V+N ML K K+ L EM + G+ + +TY +S+
Sbjct: 253 VQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVISSLV---- 308
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
K GL++++ + + + Y
Sbjct: 309 --------------------------------KDGLVEESFKTFYEM-KNLGFVPEEVTY 335
Query: 124 NVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+++++L K G +D+ ++++E Y++ V N ++++ K D A +F E E
Sbjct: 336 SLLISLSSKTGNRDEAIKLYEDMRYRRIVPS-NYTCASLLTLYYKNGDYSRAVSLFSEME 394
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D I LI +Y + GL E AE + G + K++ +A + +
Sbjct: 395 KNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFE 454
Query: 242 KAVEAMK 248
KA+ M+
Sbjct: 455 KALTIME 461
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 5/175 (2%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
+G++ Y +++ Y K G + L EM+E GI + +Y ++ YA A H
Sbjct: 845 VGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHE 904
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGK-VGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
++ M D + D + Y + Y + L+ ++ E + + V+ +N
Sbjct: 905 AQELFQAMLRD-GCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVH--FNQ 961
Query: 126 ILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+L+ + K G ++ R++ L + YR ++ L +E FE+
Sbjct: 962 LLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQ 1016
>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
Length = 581
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 11/206 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ YN++L+ + GN +++ L+HEM+ + D T T ++AY
Sbjct: 308 RMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNTLINAYCKRG 367
Query: 63 DHEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D K+ MME+ + L+ Y + +G+ K LD A K++ Q+ A +
Sbjct: 368 DMTSACKVKKKMMES--GLQLNHFTYKALIHGFCKARELDGA----KEAFFQMVDAGFSP 421
Query: 122 AYNVILTLYGKYGKK---DDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y+V L + KK D VL I EL K+ + YR++I L + ++ A+++F
Sbjct: 422 NYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQRVF 481
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNG 203
++ +S+ L D+ + L Y G
Sbjct: 482 DQMQSKGLVGDSLVYATLAYTYLTKG 507
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 115/264 (43%), Gaps = 27/264 (10%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA--- 59
+M GLA TT VYN+ML + K G+ + ++++ M+ G+T DR++Y T ++ Y
Sbjct: 168 EMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKG 227
Query: 60 ---------DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS 110
D D EGI D V + + +G K G + +A A L
Sbjct: 228 MGYEAMCARDRMDKEGIRP-------------DTVTWNSSIHGLCKEGRVKEA-AQLFTE 273
Query: 111 EEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDD 169
+ N Y ++ Y + G ++ +++ + A + Y ++ L + +
Sbjct: 274 MVAAQATPDNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGN 333
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
++ ++ E + + + D N LI+ YC+ G + A + G +++ ++
Sbjct: 334 MKEVHRLLHEMDGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKA 393
Query: 230 LATGYRQNSQIHKAVEAMKKVLAA 253
L G+ + ++ A EA +++ A
Sbjct: 394 LIHGFCKARELDGAKEAFFQMVDA 417
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 6/254 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G A ++Y S++ L + TG + + M E G D TY T + ++
Sbjct: 306 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 365
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +IL +M A V D Y ++ +GY K+ +D+A + + G K N
Sbjct: 366 IGNVEAAGEILELM-AKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVAS--GIKPN 422
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ +NV++ K GK D +++ L K+ V Y +I L K + A F
Sbjct: 423 AVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQF 482
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + + + LI + G + +A+ LV G V+++ L TG +
Sbjct: 483 QEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS 542
Query: 238 SQIHKAVEAMKKVL 251
S + A + ++++
Sbjct: 543 SMVDTAWDVFQEMM 556
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 125/297 (42%), Gaps = 16/297 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M D G + + +++ + K G + L+++ + D + Y + + Y A D
Sbjct: 33 MIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKR-FRPDVFLYTSVIHGYCKAGD 91
Query: 64 HE-GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ G + +T P +LD + Y TV G +D+A + + E + G N
Sbjct: 92 LDTGYFRAVT-----PKASLDVISYTTVIKGLADSKRIDEACELFE--ELKTAGCSPNVV 144
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY ++ K G+ +D L+ +E + + Y VI L K L A K+FE+
Sbjct: 145 AYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQM 204
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ DT LID + + +++A L++ KG E ++ + G+ + I
Sbjct: 205 VQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMI 264
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++A K+V+A + +P + + L Y+ +G A + + +G P
Sbjct: 265 NEA----KEVIAQMRER-GCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAP 316
>gi|297836834|ref|XP_002886299.1| hypothetical protein ARALYDRAFT_319921 [Arabidopsis lyrata subsp.
lyrata]
gi|297332139|gb|EFH62558.1| hypothetical protein ARALYDRAFT_319921 [Arabidopsis lyrata subsp.
lyrata]
Length = 424
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 133/301 (44%), Gaps = 33/301 (10%)
Query: 38 EMEENGITYDRYTYCTRLSAYADASDH--EGIDKILTMMEADPNVALDWVIYATVGNGYG 95
+M+ G+++D+ L++Y+ ASD +G++K L+ E + W + G Y
Sbjct: 150 KMQPQGLSFDKL-----LTSYSMASDLDVQGMEKFLSKWEV--MIQEKWTTFYFPGLVYL 202
Query: 96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLN 154
+ G +K LA+L++SE + Y ++T Y +DV R+W L K + +
Sbjct: 203 RAGFREKGLALLRRSEPSVGDRAREIIYGCLMTAYCSENLTEDVYRLWNLAKDYGISFDS 262
Query: 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
+ +++ + +K DL +++ EEW+ C + + +F + C EK ++
Sbjct: 263 SKCSDIVKAFMKKGDL---DEVMEEWDE---CPNIDLMDFGLQHRCMKEEAEKIVDMFGK 316
Query: 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAV-EAMKKVLAAYQTLVKWKPSVE---SLAAC 270
++ K + +K + + + K V EAM+ L +W P S AC
Sbjct: 317 KESKWESLALKVNNLVEDEDDKEEERRKRVAEAMEGRLHD-----RWNPKSSMALSAYAC 371
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNE 330
+ Y + D+ + + LLN + +++L + + +L+ + + G G +
Sbjct: 372 VQYVEGRRDMESTADILRLLNKR--------EQVLHAMDKDRLSLKMVEAMRGGGYVGGD 423
Query: 331 E 331
+
Sbjct: 424 D 424
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 30/298 (10%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ YNSM+ + K + + + + M G + D +T+ T + Y A
Sbjct: 348 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA- 406
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ID + ++ P L + V Y T+ +G+ VG L+ AL + S++ I
Sbjct: 407 --KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDL---SQQMISSGVCP 461
Query: 121 S--AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NG-------YRNVISSLLK 166
N +L GK D L +++ +K+ L+ NG Y +I L+
Sbjct: 462 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521
Query: 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
AE+++EE + + DT + +ID C+ L++A + K +V +
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT 581
Query: 227 WYYLATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
+ L GY + ++ +E + ++A Y TL+ V ++ LD F++
Sbjct: 582 FNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQE 639
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 12/270 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ + +++ + G + +L+ M ENG+ D+ TY T + D +L
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLR 241
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME ++ + VIY+ + +G K G + + E Q KG N YN ++ +
Sbjct: 242 KMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLF--IEMQDKGIFPNIVTYNCMIGGFC 299
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ R+ E+ ++ + Y +I++ +K A ++++E + + +T
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N +ID +C+ L+ AE++ KG V ++ L GY +I +E + ++
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419
Query: 251 --------LAAYQTLVKWKPSVESLAACLD 272
Y TL+ V L A LD
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALD 449
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 9/210 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+D G+ V YN M+ + +G + L+ EM E I+ + TY ++A+
Sbjct: 278 EMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEG 337
Query: 63 DH----EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
E D++L + + + Y ++ +G+ K LD A M +
Sbjct: 338 KFFEAAELYDEMLPR-----GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
V + +I G D + + E+ ++ + Y +I + DL +A + +
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ S +C D N L+D C NG L+ A
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDA 482
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 130/327 (39%), Gaps = 34/327 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + +A YN ++ K +K ++HEM + G+T D T+ + +
Sbjct: 249 LKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCK 308
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L +M A+ N Y T+ +G K +D+A ++ +E + V
Sbjct: 309 AGKFERAHSLLAVM-AERNCRPSCCTYNTLISGLCKQQNVDRAKDLV---DEFVSSGFVP 364
Query: 121 S--AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y+++ K G+ D+ + E+ K Y +I L K E A ++
Sbjct: 365 DVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELL 424
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E S D ++D C+ G L+KA +V +G V ++ L G +
Sbjct: 425 ESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRT 484
Query: 238 SQIHKAVEAMKKVLA--------AYQTLV-------------------KWKPSVESLAAC 270
++ +A K++++ AY +LV + P ++ A
Sbjct: 485 GRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNAL 544
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIP 297
+D + EG + N E + +G +P
Sbjct: 545 MDGYCKEGRLDEIPNVFEDMACRGCVP 571
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 10/249 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G V Y+ + K G ++ L+ EM G T + TY T + AS E
Sbjct: 361 GFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKA 420
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA--YNV 125
++L + + V D V Y + +G K G LDKAL M+ E +K S Y
Sbjct: 421 YELLESLVSSGFVP-DVVTYTIIVDGLCKEGRLDKALKMV---EGMLKRGCTPSVITYTA 476
Query: 126 ILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ + G+ D+ I+ E+ K Y ++++ K + A+K+ +
Sbjct: 477 LMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTP 536
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ N L+D YC+ G L++ N+ +G ++K++ + G ++ ++ +A
Sbjct: 537 Y---IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAF 593
Query: 245 EAMKKVLAA 253
++ + +A
Sbjct: 594 PFLESMHSA 602
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 113/285 (39%), Gaps = 41/285 (14%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YN+++ + + + + + EM E + D +TY + AS + ++L
Sbjct: 227 IAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHE 286
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M D V D V + ++ +G K G ++A ++L E
Sbjct: 287 M-VDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAE--------------------- 324
Query: 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ + Y +IS L K +++ A+ + +E+ S D +
Sbjct: 325 --------------RNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYS 370
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
L D C+ G +++A LV KG ++ ++ L G + S+ KA E ++ ++++
Sbjct: 371 ILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSS 430
Query: 254 YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ P V + +D EG + A +E + +G P+
Sbjct: 431 -----GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 470
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 12/250 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ V YN+++ + K F+ ++ M + G+ D TY T +S +
Sbjct: 631 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 690
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +++ M + V Y T+ + K G L +AL ++ G + N
Sbjct: 691 TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH--GVEAN 748
Query: 121 S-AYNVILTLYGKYGKKDD---VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ YN+ + K G+ D+ +L + + V Y VI L K + L+ A K+
Sbjct: 749 TVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEV-----SYTTVIIGLCKAEQLDRASKL 803
Query: 177 FEEWES-QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
E + + LC + N LID + + L++A L+ +G V ++ + T
Sbjct: 804 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLC 863
Query: 236 QNSQIHKAVE 245
+ ++ KA E
Sbjct: 864 KLDKVDKAWE 873
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/329 (18%), Positives = 126/329 (38%), Gaps = 51/329 (15%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D G +T N L+ + G+ +++ ++ M + G D YTY H
Sbjct: 118 DRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTY------------HL 165
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYN 124
I + M + +DKA ML K+ +++G K S Y
Sbjct: 166 VIKSLCQMNQ------------------------IDKAFTMLDKA--KVRGFKPEVSVYT 199
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ + K G+ D L I+ + Y +I + +D + A + +E +
Sbjct: 200 ILTRAFCKTGRLKDALEIFRNIPSPDAI---AYNAIIHGHCRKNDCDGALEFLKEMNERK 256
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ D N LID C+ +KA +++ +G ++ + G + + +A
Sbjct: 257 VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERA- 315
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKL 304
++ V+A +PS + + + ++ A++ ++ GF+P + +
Sbjct: 316 HSLLAVMAERN----CRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSI 371
Query: 305 LDN--VQNGKSN--LETLRELYGNSLAGN 329
L + + G+ + E ++E+ G N
Sbjct: 372 LADGLCKRGRIDEAFELVKEMSGKGCTPN 400
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ +R+ + YN+++ K G ++ LM M +G+ + TY + + D
Sbjct: 703 EMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTY----NIFIDR 758
Query: 62 SDHEG-IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
EG +D+ +++ ++ + D V Y TV G K LD+A + L + +KG +
Sbjct: 759 LCKEGRLDEASSLL-SEMDTLRDEVSYTTVIIGLCKAEQLDRA-SKLAREMVAVKGLCIT 816
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S +N+++ + K + D+ L + L ++ Y VI+ L KLD ++ A ++F+
Sbjct: 817 SHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFD 876
Query: 179 EWESQAL 185
E + +
Sbjct: 877 EMAVRGI 883
>gi|222624963|gb|EEE59095.1| hypothetical protein OsJ_10946 [Oryza sativa Japonica Group]
Length = 318
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 117/238 (49%), Gaps = 13/238 (5%)
Query: 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
++A++ A++ + + L +M A +V D VIY + +G + +AL + +E ++
Sbjct: 72 VAAFSAAANFGKVSETLHLMIAAGSVP-DTVIYQRIIHGLFAHKMGSEALRVF--NEIKL 128
Query: 115 KGAKVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLES 172
+G V++ Y + K G D+ +IW E+ K ++ Y ++++ K D E
Sbjct: 129 RGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEM 188
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A K+++E + L T N L+ +C +G +++A + KG E V ++ L
Sbjct: 189 ARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQ 248
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
G + ++ +A++ +++L++ +PSV + +D +EG + A +ELL
Sbjct: 249 GLCKAGRLSEAIQVYEQLLSS-----GLEPSVSTFTPLIDTMCEEGQVDAA---VELL 298
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 43/212 (20%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y + + K G ++ + +EM + G+ + Y YC+ ++ Y A D E K+
Sbjct: 135 AVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYD 194
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M +G G LK+S + N+++T +
Sbjct: 195 EM---------------LGKG-------------LKES---------TVSCNILVTGFCT 217
Query: 133 YGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
+G+ D+ L ++ E+ KK ++ Y +I L K L A +++E+ S L
Sbjct: 218 HGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVST 277
Query: 192 PNFLIDVYCRNGLLEKAENL-----VNHEKLK 218
LID C G ++ A L + H LK
Sbjct: 278 FTPLIDTMCEEGQVDAAVELLKPFFIAHRFLK 309
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 127/305 (41%), Gaps = 20/305 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KMR G YN ++ + G ++ + M G+ TY + A
Sbjct: 180 LGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGR 239
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
D I +L ME PN+ Y G+ G +D A +LK E++ G
Sbjct: 240 RRDTGTIMDLLEEMETLGLRPNI----YTYTICIRVLGRAGRIDDAYGILKTMEDEGCGP 295
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNVISSLLKLDDLESA 173
V + Y V++ GK D + ELY K + Y ++S DLE+
Sbjct: 296 DVVT-YTVLIDALCAAGKLD---KAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETV 351
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++ + E E+ D L++ C++G +++A ++++ +++G ++ ++ L +G
Sbjct: 352 KRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISG 411
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
++ +A+E + + + P+ S +DY+ GD A + E + +
Sbjct: 412 LLNLRRLDEALELFNNMES-----LGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKR 466
Query: 294 GFIPT 298
G +P+
Sbjct: 467 GIMPS 471
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 130/327 (39%), Gaps = 12/327 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M D G V Y ++ G +K L +M + D TY T +S + +
Sbjct: 285 LKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGN 344
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E + + + MEAD A D V Y + K G +D+A ML +++G N
Sbjct: 345 YGDLETVKRFWSEMEAD-GYAPDVVTYTILVEALCKSGKVDQAFDML--DVMRVRGIVPN 401
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV--ISSLLKLDDLESAEKIF 177
YN +++ + D+ L ++ +++ V Y V I KL D E A F
Sbjct: 402 LHTYNTLISGLLNLRRLDEALELFN-NMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTF 460
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E+ + + + N + G + +A+++ N G ++ + Y +
Sbjct: 461 EKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKA 520
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
QI KA + + ++L+ +P + + + +D G + A L D P
Sbjct: 521 GQIDKATKLLTEMLSE-----GCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAP 575
Query: 298 TDLQDKLLDNVQNGKSNLETLRELYGN 324
T + +L + L +L+G+
Sbjct: 576 TVVTYNILITGLGKEGKLLKALDLFGS 602
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 124/306 (40%), Gaps = 51/306 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEM-----EENGITY----------- 46
+M++ G YN +L + K+ ++L L +EM + N IT+
Sbjct: 813 EMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSN 872
Query: 47 ------DRY-------------TYCTRLSAYADASDHEGIDKILTMM---EADPNVALDW 84
D Y TY + A E KI M + PN A
Sbjct: 873 SINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCA--- 929
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIW 143
IY + NG+GK G ++ A + K+ ++ G + + +Y +++ G+ DD + +
Sbjct: 930 -IYNILINGFGKAGNVNIACDLFKRMIKE--GIRPDLKSYTILVECLFMTGRVDDAVHYF 986
Query: 144 ELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
E K + Y +I+ L K LE A +F E +++ + + N LI +
Sbjct: 987 EELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNA 1046
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
G++++A + + G E +V ++ L G+ ++ +A KK++ +V P
Sbjct: 1047 GMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMM-----IVGCSP 1101
Query: 263 SVESLA 268
+ + A
Sbjct: 1102 NAGTFA 1107
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++++ GL TV YN M+ K+ E+ SL EM+ GI+ + YTY + + +
Sbjct: 986 FEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGN 1045
Query: 61 ASDHEGIDKI---LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + K+ L M +PNV Y + G+ K G D+A ++ KK I G
Sbjct: 1046 AGMVDQAGKMFEELQFMGLEPNV----FTYNALIRGHSKSGNKDRAFSVFKKM--MIVGC 1099
Query: 118 KVNSA 122
N+
Sbjct: 1100 SPNAG 1104
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 13/211 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M LG+A T Y + Y K G+ EK +M++ GI L + A+
Sbjct: 428 MESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGR 487
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
I + + ++ D V Y + Y K G +DKA +L + + +
Sbjct: 488 IREAKDIFNDIH-NCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVN 546
Query: 124 NVILTLYGKYGKKDDVLRIWELY------KKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
++I TLY K G+ D+ W+++ K A V+ Y +I+ L K L A +F
Sbjct: 547 SLIDTLY-KAGRVDEA---WQMFGRLKDLKLAPTVVT--YNILITGLGKEGKLLKALDLF 600
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ +T N L+D C+N ++ A
Sbjct: 601 GSMKESGCPPNTVTFNALLDCLCKNDAVDLA 631
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 30/298 (10%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ YNSM+ + K + + + + M G + D +T+ T + Y A
Sbjct: 348 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA- 406
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ID + ++ P L + V Y T+ +G+ VG L+ AL + S++ I
Sbjct: 407 --KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDL---SQQMISSGVCP 461
Query: 121 S--AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NG-------YRNVISSLLK 166
N +L GK D L +++ +K+ L+ NG Y +I L+
Sbjct: 462 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 521
Query: 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
AE+++EE + + DT + +ID C+ L++A + K +V +
Sbjct: 522 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT 581
Query: 227 WYYLATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
+ L GY + ++ +E + ++A Y TL+ V ++ LD F++
Sbjct: 582 FNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQE 639
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 12/270 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ + +++ + G + +L+ M ENG+ D+ TY T + D +L
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLR 241
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME ++ + VIY+ + +G K G + + E Q KG N YN ++ +
Sbjct: 242 KMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLF--IEMQDKGIFPNIVTYNCMIGGFC 299
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ R+ E+ ++ + Y +I++ +K A ++++E + + +T
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N +ID +C+ L+ AE++ KG V ++ L GY +I +E + ++
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419
Query: 251 --------LAAYQTLVKWKPSVESLAACLD 272
Y TL+ V L A LD
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALD 449
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 9/210 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+D G+ V YN M+ + +G + L+ EM E I+ + TY ++A+
Sbjct: 278 EMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEG 337
Query: 63 DH----EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
E D++L + + + Y ++ +G+ K LD A M +
Sbjct: 338 KFFEAAELYDEMLPR-----GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
V + +I G D + + E+ ++ + Y +I + DL +A + +
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ S +C D N L+D C NG L+ A
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDA 482
>gi|222616383|gb|EEE52515.1| hypothetical protein OsJ_34721 [Oryza sativa Japonica Group]
Length = 820
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 47/308 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K +D GL V+YN + Y K GN + L++EM+ G+T D+ Y +S Y
Sbjct: 389 KFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKG 448
Query: 63 DHEGIDKIL-TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + ++ M++A N+ D V Y + +G+ K GL+ + +L + +Q G + NS
Sbjct: 449 EMQNAQQVFEEMLKA--NIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQ--GLEPNS 504
Query: 122 -AYNVILTLYGKYGKKDD---------------------------VLRIW--ELYKKAVK 151
Y + + + + G + +L W Y V+
Sbjct: 505 LTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVR 564
Query: 152 VLNNG-------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
V G +I+ L ++ +++ A + + + D + LI +YC+NG
Sbjct: 565 VARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGD 624
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
++KA + +G + V + L GY + ++ +A + L T + KP V
Sbjct: 625 MDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQ-----LFVQMTNLGIKPDV 679
Query: 265 ESLAACLD 272
+ LD
Sbjct: 680 IAYTVLLD 687
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 8/264 (3%)
Query: 38 EMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV 97
EM E G+ D Y + L D ++ IL + + V ++ + Y V +G K
Sbjct: 249 EMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINRE-KVPVEAMAYNMVMDGLCKE 307
Query: 98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNG 156
LD+A +L+ Q V Y+ ++ Y K G + + +E + ++ +
Sbjct: 308 MRLDEAEKLLENKARQGSNPDV-YGYSYLIRSYCKMGNLINAVDHYEAMVSHGIETNCHI 366
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
++ KL A F +++ L D I N +D YC+NG + +A L+N K
Sbjct: 367 VSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMK 426
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
G + L +GY ++ A + +++L A +P + + F
Sbjct: 427 YGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKA-----NIEPDIVTYNILASGFCK 481
Query: 277 EGDIGGAENFIELLNDKGFIPTDL 300
G + + ++ + D+G P L
Sbjct: 482 SGLVMEVFDLLDRMADQGLEPNSL 505
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 136/327 (41%), Gaps = 30/327 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY-- 58
+ +M D GL ++ Y + + + GN + + L + +EE GI + Y + + Y
Sbjct: 492 LDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLL 551
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ +DH +L + A +D + + N +VG + A + K E
Sbjct: 552 SGWTDHA---YMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPD 608
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V S Y+ ++++Y + G D +W ++ ++ + V Y +++ K L+ A ++
Sbjct: 609 VIS-YSKLISIYCQNGDMDKA-HLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQL 666
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL----------VNHEKLKGR------ 220
F + + + D L+D + + L + E + NH KL
Sbjct: 667 FVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQI 726
Query: 221 EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI 280
E V + L G + + +A E ++L T P + A ++ + +G+I
Sbjct: 727 EPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLT-----PDAYAYTALINGYCSQGEI 781
Query: 281 GGAENFIELLNDKGFIPTDLQDKLLDN 307
AE+ ++ + DKG P +L +L+
Sbjct: 782 SKAEDLLQEMIDKGIEPDELTFSVLNQ 808
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 133/339 (39%), Gaps = 37/339 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM GL VVY+ ++ Y G E+ L+ M +G+ D + Y +S +
Sbjct: 461 LEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSK 520
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV- 119
A E L ++ + D V + GY K G + +A K +E + +
Sbjct: 521 AGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEA---AKYFDEMLDHGLMP 576
Query: 120 -NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N Y V++ + K G + L I+ L+ V I LLK ++ A K+F
Sbjct: 577 NNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 636
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + + L D + LI +C+ G +EKA L + LKG ++ + L G ++
Sbjct: 637 SELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKS 696
Query: 238 SQIHKAV--------EAMKKVLAAYQTLVKWKPSVESLAACLDYFKD------------- 276
I +A + ++ Y T++ E++A F +
Sbjct: 697 GDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVY 756
Query: 277 ---------EGDIGGAENFIELLNDKGFIPTDLQDKLLD 306
EGD+ A N + KGF T + L+D
Sbjct: 757 NALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLID 795
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 136/318 (42%), Gaps = 17/318 (5%)
Query: 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA 76
NS+LK K G E + + M + + +D YTY + A D G ++L M+
Sbjct: 197 NSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDE 256
Query: 77 ---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGK 132
+PN IY+ V G +VG +D+A+ + + E KG N+ Y +I +
Sbjct: 257 KGLNPN----EFIYSLVIEGMCQVGDIDEAVELKRSMGE--KGLVPNTYTYTIITAGLCR 310
Query: 133 YGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
+ ++ L E+ K +K N +I ++ D++ +I + S + +
Sbjct: 311 AKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLIT 370
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
N LI C+ G +EKA ++ G + + +++ L GY + + +A+E + ++
Sbjct: 371 YNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM- 429
Query: 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNG 311
+ LV PS S A ++ D+ A +E + G P + +L
Sbjct: 430 -EKRNLV---PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYAS 485
Query: 312 KSNLETLRELY-GNSLAG 328
+ +E R L G S +G
Sbjct: 486 EGRIEEARRLLDGMSCSG 503
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 112/282 (39%), Gaps = 37/282 (13%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + GL +V Y++M+ Y K+ N + SL HEM G+ + Y + D
Sbjct: 709 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD 768
Query: 64 HE-------------------------GIDKILTMMEADP--------NVALDWVIYATV 90
E G K + EA + D V Y TV
Sbjct: 769 MEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 828
Query: 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIWE-LYKK 148
+ + K G +++A + K+ +E + V++ Y ++ Y K G+ +V ++E + K
Sbjct: 829 IDWHCKAGKMEEANLLFKEMQE--RNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAK 886
Query: 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
VK Y VI + K D+L A K+ +E + + I + LI C+ L +A
Sbjct: 887 GVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEA 946
Query: 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
L++ G + + + L + + ++ +A + V
Sbjct: 947 SKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGV 988
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 67/335 (20%), Positives = 129/335 (38%), Gaps = 47/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M LG + + +++ Y + N + L+ EME+ + +Y ++
Sbjct: 391 LKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCH 450
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKA-------------- 103
D +K+L M PNV V+Y+ + Y G +++A
Sbjct: 451 CKDLSLANKLLEKMTFSGLKPNV----VVYSILIMAYASEGRIEEARRLLDGMSCSGVAP 506
Query: 104 --------LAMLKKS-----------EEQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIW 143
++ L K+ E Q +G K ++ + + Y K GK + + +
Sbjct: 507 DIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYF 566
Query: 144 -ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
E+ + N Y +I+ K +L A IF + + D + + I +N
Sbjct: 567 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKN 626
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP 262
G +++A + + K KG V ++ L +G+ + ++ KA E L L P
Sbjct: 627 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE-----LHDEMCLKGIAP 681
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ A +D GDI A + + +KG P
Sbjct: 682 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEP 716
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 113/296 (38%), Gaps = 10/296 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+ + YN ++ K G EK ++ M G + T+C + Y +
Sbjct: 359 MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHN 418
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
++L ME N+ V Y + NG L A +L+K G K N
Sbjct: 419 MGRALELLDEMEKR-NLVPSAVSYGAMINGLCHCKDLSLANKLLEKM--TFSGLKPNVVV 475
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y++++ Y G+ ++ R+ + + V Y +IS L K +E A E +
Sbjct: 476 YSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 535
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ L D I Y + G + +A + G + + L G+ + +
Sbjct: 536 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 595
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A+ ++ L A L P V++ +A + G + A L +KG +P
Sbjct: 596 EALSIFRR-LHALGVL----PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVP 646
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 120/301 (39%), Gaps = 20/301 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M D + Y ++ KTG+ ++ EM+E G+ + + Y + D
Sbjct: 219 MLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGD 278
Query: 64 -HEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++ +M E PN Y + G + +++A K + E+++ +
Sbjct: 279 IDEAVELKRSMGEKGLVPNT----YTYTIITAGLCRAKRMNEA----KLTFEEMQKTGLK 330
Query: 121 SAYNVILTL---YGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKI 176
YN L + + G D+VLRI ++ +N Y +I L K +E A +I
Sbjct: 331 PDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEI 390
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ + ++R LI+ YCR + +A L+ ++++ R + + Y G
Sbjct: 391 LKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELL--DEMEKRNLVPSAVSY---GAMI 445
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
N H ++ L T KP+V + + + EG I A ++ ++ G
Sbjct: 446 NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVA 505
Query: 297 P 297
P
Sbjct: 506 P 506
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 116/255 (45%), Gaps = 5/255 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + L + YNS++ + G+ + L+ M+E G+ D+ TY +
Sbjct: 315 LDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCK 374
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
++ E ++ + + V+ + ++Y+ + +GY KVG +D+A + +K K N
Sbjct: 375 SNRVEEARRLFDSL-TEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLS--KNCSPN 431
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ +N ++ G + L ++ ++ K +K + +I +LK D + A K +
Sbjct: 432 AYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQ 491
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ S R N I+VYC G +++AE+++ K +G ++ L Y +
Sbjct: 492 KMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLG 551
Query: 239 QIHKAVEAMKKVLAA 253
+ A + +K + A
Sbjct: 552 LTYSAFDVLKSMFDA 566
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 108/252 (42%), Gaps = 11/252 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM G YN+ +++Y G ++ + +M +M+E G+ D +TY + + AY
Sbjct: 490 LQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGK 549
Query: 61 AS-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ D + +M +AD + + + L DK + K E ++ V
Sbjct: 550 LGLTYSAFDVLKSMFDADCEPS-HHTFLSLIKQ------LFDKRYVVEKSGETGVES--V 600
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
++ +V + K + D V+ ++ E+ K + Y +IS + K+++L A K+ +
Sbjct: 601 SNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLD 660
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + + + + N +I C+ +A N+V G ++ L G +
Sbjct: 661 QMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEG 720
Query: 239 QIHKAVEAMKKV 250
+ + KK+
Sbjct: 721 ETERGNSVFKKL 732
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 124/291 (42%), Gaps = 9/291 (3%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
R V YN ++ + G ++ SL M+++ + YTY + + H+ + +
Sbjct: 256 RNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAMGLL 315
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
M+E N+ D + Y ++ G + G LD A +L +E+ Y +
Sbjct: 316 DEMLER--NLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKER-GLVPDQRTYGCFIDFL 372
Query: 131 GKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
K + ++ R+++ L ++ V Y +I K+ ++ A +FE+ S+ +
Sbjct: 373 CKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNA 432
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
N LI C G L++A +L + G + V ++ L + A + ++K
Sbjct: 433 YTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQK 492
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
++++ + KP + A ++ + G + AE+ + + ++G P D
Sbjct: 493 MMSSGE-----KPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDF 538
>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 484
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 136/325 (41%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T+ NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTIINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + DD LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI C +G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q +AV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPMIEYLCNNGQAAKAEALVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 LKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 134/302 (44%), Gaps = 9/302 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MRD G+ V+N ++K K G F + T D T+ + A
Sbjct: 53 LDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVK 112
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +I M + V Y TV NG K G LD+A+ +L E V
Sbjct: 113 SGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI 172
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+V++ K G+ D + E+ ++ + Y +++ L K L+ A ++ +
Sbjct: 173 T-YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELV-Q 230
Query: 180 WESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
++ CY T + N L++++CR+ +++A L+ +G V ++ + G +++
Sbjct: 231 LMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDA 290
Query: 239 QIHKAVEAMKKVLAA--YQTLVKWKPSVESLAACLDYFKD-EGDIGGAENFIELLNDKGF 295
++ A +K+++AA ++ + ++ L C D+ D + + A +E++ G
Sbjct: 291 RLDDAQALLKQMVAARCVPDVITYSTIIDGL--CKDWRVDADWKLEAACEILEMMKQTGC 348
Query: 296 IP 297
P
Sbjct: 349 PP 350
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 94/217 (43%), Gaps = 10/217 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ G Y +++ + ++ +L+ M ++ + D ++ + +
Sbjct: 340 LEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCK 399
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ D + KI MM E PN V YA + +G K G +DKA+ + + E +
Sbjct: 400 SHDLDAAYKIFGMMSERECKPN----PVAYAALIDGLSKGGEVDKAVRVFELMVESFRPG 455
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ YN +L G+ ++ +R+ E + K Y +I L ++ +E A ++
Sbjct: 456 V--ATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYEL 513
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
F+ E++ + + N L++ C+ L A + N
Sbjct: 514 FQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVAN 550
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q M G T V YNS+++L+ ++ ++ L+ M E G D Y T ++
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD---------KALAMLKKSE 111
+ + +L M A V D + Y+T+ +G K +D + L M+K++
Sbjct: 289 DARLDDAQALLKQMVAARCVP-DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQT- 346
Query: 112 EQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDD 169
G N+ Y V++ + K L + + V + + + VI SL K D
Sbjct: 347 ----GCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHD 402
Query: 170 LESAEKIF 177
L++A KIF
Sbjct: 403 LDAAYKIF 410
>gi|297806979|ref|XP_002871373.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp.
lyrata]
gi|297317210|gb|EFH47632.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp.
lyrata]
Length = 410
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 6/197 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
L+ + YN M+ LY G EK+ ++ ++ ++ D +TY LS+ A + + +
Sbjct: 188 SLSFGAITYNEMMTLYMSVGQVEKVPEVIQVLKHKKVSPDIFTYNLWLSSCAATFNIDEL 247
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+IL M D + WV Y + + Y + A + E+ + Y+ ++
Sbjct: 248 RRILEEMRHDASSNEGWVRYINLTSIYINSSRVTNAESTSPVEAEKSISQREWITYDFLM 307
Query: 128 TLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW-ESQAL 185
L+ G K + +IW+ L K+ + Y V+SS L L L AE+I +W ES+
Sbjct: 308 ILHTGLGNKVMIDQIWKSLGNTNQKLSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTT 367
Query: 186 CYDT----RIPNFLIDV 198
+D RI N DV
Sbjct: 368 EFDASACLRILNAFRDV 384
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 30/298 (10%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ YNSM+ + K + + + + M G + D +T+ T + Y A
Sbjct: 350 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA- 408
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ID + ++ P L + V Y T+ +G+ VG L+ AL + S++ I
Sbjct: 409 --KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDL---SQQMISSGVCP 463
Query: 121 S--AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NG-------YRNVISSLLK 166
N +L GK D L +++ +K+ L+ NG Y +I L+
Sbjct: 464 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLIN 523
Query: 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
AE+++EE + + DT + +ID C+ L++A + K +V +
Sbjct: 524 EGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT 583
Query: 227 WYYLATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
+ L GY + ++ +E + ++A Y TL+ V ++ LD F++
Sbjct: 584 FNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQE 641
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 114/270 (42%), Gaps = 12/270 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V + +++ + G + +L+ M E+G+ + TY T + D +L
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLR 243
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME ++ + VIY+ + + K G A + +E Q KG + YN ++ +
Sbjct: 244 KMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF--TEMQEKGIFPDLFTYNSMIVGFC 301
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ D ++ E+ ++ + Y +I++ +K A ++++E + + +T
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 361
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N +ID +C+ L+ AE++ KG V ++ L GY +I +E + ++
Sbjct: 362 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 421
Query: 251 --------LAAYQTLVKWKPSVESLAACLD 272
Y TL+ V L A LD
Sbjct: 422 PRRGLVANTVTYNTLIHGFCLVGDLNAALD 451
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 9/210 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++ G+ YNSM+ + +G + + L+ EM E I+ D TY ++A+
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339
Query: 63 DH----EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
E D++L + + + Y ++ +G+ K LD A M +
Sbjct: 340 KFFEAAELYDEMLPR-----GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 394
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
V + +I G D + + E+ ++ + Y +I + DL +A + +
Sbjct: 395 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 454
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ S +C D N L+D C NG L+ A
Sbjct: 455 QMISSGVCPDIVTCNTLLDGLCDNGKLKDA 484
>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 790
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 127/305 (41%), Gaps = 11/305 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G+ + N+ + + K EK + M+ GI D +Y + Y D
Sbjct: 258 MQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDV-- 315
Query: 64 HEGIDKILTMMEADP--NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
ID L ++ P D V Y TV K +++ +++ +
Sbjct: 316 -HRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQV 374
Query: 122 AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ K+G DD L + E +K + GY V+ S K +++ A+ + +
Sbjct: 375 TYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDM 434
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S+ D +ID +CR G +++A+ ++ G + + ++ L G N
Sbjct: 435 YSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNG-- 492
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
K++EA + + + + W P+ + +A + + EG + A + + +KGF+P +
Sbjct: 493 -KSLEAREMINVSEEHW--WTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPV 549
Query: 301 QDKLL 305
LL
Sbjct: 550 DINLL 554
>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Cucumis sativus]
gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Cucumis sativus]
Length = 578
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 7/209 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM +G+ +YN ++ K+G+ EK + L+ EME + D YTY T +S Y+
Sbjct: 179 KKMIRVGVVPNIHIYNVLIHACCKSGDVEKAEQLVCEMELKSVFPDLYTYNTLISLYSRK 238
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
S H + ME V+ D V Y ++ G+ K G + +A+ + + +IK N
Sbjct: 239 SLHYEALCVQDRME-RAGVSPDIVTYNSLIYGFCKEGKMREAVKLFR----EIKDVSPNH 293
Query: 122 A-YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++ Y + ++ LR+ ++ + K + + Y +V+ L + + A K+ E
Sbjct: 294 VTYTTLIDGYCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNE 353
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ + D N LI+ YC+ G ++ A
Sbjct: 354 MGERKVEPDNVTCNTLINAYCKIGDMKSA 382
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 134/315 (42%), Gaps = 17/315 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G+A YN+++ + +E+ + EM+ G + D+ TY L Y +
Sbjct: 282 MKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRR 341
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
++L MEA A V Y ++ + Y + GLLD+A+ + KS+ KG K +
Sbjct: 342 PREAMEVLKEMEAS-GFAPSIVTYNSLISAYARDGLLDEAMEL--KSQMVKKGIKPDVFT 398
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD----DLESAEKIFE 178
Y +L+ + K GK D ++++E + A N N +L+K+ + K+FE
Sbjct: 399 YTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFN---ALIKMHGNRGNFVEMMKVFE 455
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + D N L+ V+ +NG+ + + K G ++ L + Y +
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+A+ +++L A T P + + A L G +E + + D P
Sbjct: 516 FFDQAMAIYRRMLDAGVT-----PDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPN 570
Query: 299 DLQ-DKLLDNVQNGK 312
+L LL NGK
Sbjct: 571 ELTYCSLLHAYANGK 585
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 7/211 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++M+ G + V YN++L +Y K+ + ++ EME +G TY + +SAYA
Sbjct: 314 FEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYAR 373
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D E ++ M++ + D Y T+ +G+ K G D A+ + + E ++ G +
Sbjct: 374 DGLLDEAMELKSQMVKK--GIKPDVFTYTTLLSGFEKTGKDDYAMKVFE--EMRVAGCQP 429
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIF 177
N +N ++ ++G G ++++++E K V + N + ++ + ++S +F
Sbjct: 430 NICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVF 489
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+E + + N LI Y R G ++A
Sbjct: 490 KEMKRAGFVPERDTFNTLISAYSRCGFFDQA 520
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 134/311 (43%), Gaps = 13/311 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M D G+ YN++L + G +E+ + ++ EM++ + TYC+ L AYA+
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANG 584
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E + + + + + V+ T+ Y K LL + + EQ + +
Sbjct: 585 KEVERMSALAEEIYSG-IIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643
Query: 122 AYNVILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N ++++YG+ K +++L + Y +++ + + E +E I
Sbjct: 644 -LNAMVSIYGRRRMVSKTNEILNF--IKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILR 700
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E ++ + D N +I YCRNG +++A + K G V ++ Y +S
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE-LLNDKGFIP 297
+A++ +K Y KP+ + + +D+F A +FI L N +
Sbjct: 761 MFIEAIDVVK-----YMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVT 815
Query: 298 TDLQDKLLDNV 308
D + +LL+ +
Sbjct: 816 KDEERRLLERL 826
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 115/270 (42%), Gaps = 19/270 (7%)
Query: 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW 84
K G SL+H++ +G+ D Y Y + ++AYA + + +E +
Sbjct: 197 KEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE-GCRPTL 255
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144
+ Y + N YGK+G+ +A L S + A YN +++ + ++ ++E
Sbjct: 256 ITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFE 315
Query: 145 LYKKAV----KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
K A KV N +V K A ++ +E E+ N LI Y
Sbjct: 316 EMKAAGFSPDKVTYNALLDVYG---KSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYA 372
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260
R+GLL++A L + KG + V ++ L +G+ + + A++ +++ A
Sbjct: 373 RDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVA-----GC 427
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELL 290
+P++ + A + + G NF+E++
Sbjct: 428 QPNICTFNALIKMHGNRG------NFVEMM 451
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 15/223 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G A + V YNS++ Y + G ++ L +M + GI D +TY T LS +
Sbjct: 349 LKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEK 408
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ K+ M PN+ + GN V ++ K E+IK
Sbjct: 409 TGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMM--------KVFEEIKIC 460
Query: 118 KVNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDLESA 173
+ +N +L ++G+ G +V +++ K+A V + + +IS+ + + A
Sbjct: 461 ECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQA 520
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
I+ + D N ++ R GL E++E ++ K
Sbjct: 521 MAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK 563
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 22/252 (8%)
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDD 138
V +D Y ++ Y G +A+ + KK EE+ G + YNVIL +YGK G
Sbjct: 216 VHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE--GCRPTLITYNVILNVYGKMGMP-- 271
Query: 139 VLRIWELYKKAVKVLNNG--------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
W V + + Y +ISS + E A ++FEE ++ D
Sbjct: 272 ----WSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKV 327
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N L+DVY ++ +A ++ + G + ++ L + Y ++ + +A+E ++
Sbjct: 328 TYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQM 387
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQN 310
+ KP V + L F+ G A E + G P L +
Sbjct: 388 VKK-----GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHG 442
Query: 311 GKSNLETLRELY 322
+ N + +++
Sbjct: 443 NRGNFVEMMKVF 454
>gi|15223266|ref|NP_172337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262899|sp|Q9FRS4.1|PPR22_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08610
gi|9802579|gb|AAF99781.1|AC003981_31 F22O13.9 [Arabidopsis thaliana]
gi|332190196|gb|AEE28317.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 9/250 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G V YNS++ + GN E++ S++ + +G+ + TY T L + + +
Sbjct: 274 GCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEV 333
Query: 68 DKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
++IL +M P V + Y + NG K LL +A+ + EQ K YN
Sbjct: 334 EEILNIMYQTSYCPTV----ITYNILINGLCKARLLSRAIDFFYQMLEQ-KCLPDIVTYN 388
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+L K G DD + + L K Y +VI L K ++ A +++ +
Sbjct: 389 TVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDA 448
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ D LI +CR L+E+A ++ +G I ++ + G + +I A
Sbjct: 449 GIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMA 508
Query: 244 VEAMKKVLAA 253
+E ++ +L
Sbjct: 509 IEVVEIMLTG 518
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/317 (19%), Positives = 129/317 (40%), Gaps = 33/317 (10%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + +N+M+ + K GN + + + G D +TY + + Y +
Sbjct: 185 GVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDA 244
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
K+ +M + + V Y + +G+ +VG +D+AL + + +E V Y V++
Sbjct: 245 YKVFEIMPQE-GCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDV-PTYTVLV 302
Query: 128 TLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+ + GK+ + L+ +E + + ++ Y +I K+ ++ ++ + L
Sbjct: 303 AAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLV 362
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
N LID YC+ G++E A +++ KL + +++ L G+ + + +A+
Sbjct: 363 SSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMAL 422
Query: 247 MKKV--------LAAYQTLVK-----------WK-----------PSVESLAACLDYFKD 276
+ K+ L Y TL+ W+ P + A +D
Sbjct: 423 LNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCK 482
Query: 277 EGDIGGAENFIELLNDK 293
G + A E L +K
Sbjct: 483 MGKVEQAHQVFESLKEK 499
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 123/300 (41%), Gaps = 14/300 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++ G Y ++ + + G + EM ENGI + YTY + +
Sbjct: 285 QMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVG 344
Query: 63 DH-EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
EG++ + TM+E + V + + +GY K G+++ A+ +L S + K +
Sbjct: 345 KMDEGMEMLSTMLEK--GLVSSVVPFNALIDGYCKRGMMEDAICVL-DSMKLNKVCPNSR 401
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ + + D + + ++Y+ + Y +I L K ++SA ++
Sbjct: 402 TYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLM 461
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT--GYRQNS 238
D R ID C+ G +E+A + E LK + + Y A GY +
Sbjct: 462 IKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVF--ESLKEKHAEANEFLYTALIDGYCKAE 519
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A K++L P+ + LD + EG + A + ++++ PT
Sbjct: 520 KFSDAHLLFKRML-----FEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPT 574
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 106/255 (41%), Gaps = 9/255 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + L+ V YN+++ K + L H M ++G D+ T+C +
Sbjct: 423 LNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCK 482
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++ ++ + + + +Y + +GY K A + K+ +G N
Sbjct: 483 MGKVEQAHQVFESLK-EKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRM--LFEGCFPN 539
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S +NV+L K GK +D + + ++ K K + Y +I +L+ D + A +
Sbjct: 540 SITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLD 599
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQ 236
+ S + I YCR G L +AE +V K+K I + S+ Y L Y
Sbjct: 600 QMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMV--VKIKEEGILLDSFIYDVLVNAYGC 657
Query: 237 NSQIHKAVEAMKKVL 251
Q+ A + ++
Sbjct: 658 IGQLDSAFGVLIRMF 672
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 117/299 (39%), Gaps = 70/299 (23%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G V Y + +K Y + G + + ++ +++E GI D +
Sbjct: 598 LDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSF----------- 646
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
IY + N YG +G LD A +L + + G + +
Sbjct: 647 -------------------------IYDVLVNAYGCIGQLDSAFGVLIRMFD--TGCEPS 679
Query: 121 -SAYNVIL--TLYGKYGKKD------------DVLRIWE---------LYKKAVK---VL 153
Y+++L ++ KY K+ D IW+ L++K V+ V
Sbjct: 680 RQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVP 739
Query: 154 N-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
N N Y +I L K++ L A ++F + + I N L+ C+ G+ E+A L+
Sbjct: 740 NVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLL 799
Query: 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA---YQTLVKWKPSVESLA 268
+ H++S+ L G + KA E + +L+ Y +V WK ++ L
Sbjct: 800 DSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVV-WKVLLDGLV 857
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 136/318 (42%), Gaps = 17/318 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ MR G+A YN+++ + +E+ L +M+ G T D+ TY L +
Sbjct: 252 VEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGK 311
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + K+L MEA+ + V Y ++ + Y K GLL++AL + K++ KG K +
Sbjct: 312 SRRPQEAMKVLQEMEAN-GFSPTSVTYNSLISAYAKGGLLEEALDL--KTQMVHKGIKPD 368
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD----DLESAEK 175
Y +L+ + K GK D ++++ L +AV N ++L+K+ K
Sbjct: 369 VFTYTTLLSGFEKAGKDDFAIQVF-LEMRAVGCKPNIC--TFNALIKMHGNRGKFAEMMK 425
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F++ + D N L+ V+ +NG+ + + K G ++ L + Y
Sbjct: 426 VFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYS 485
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ +A+ K +L A P + + A L G +E + + D
Sbjct: 486 RCGSFDQAMAVYKSMLEAGVV-----PDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRC 540
Query: 296 IPTDLQ-DKLLDNVQNGK 312
P +L LL NGK
Sbjct: 541 KPNELSYSSLLHAYANGK 558
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 7/252 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
KM+ G T + YN +L +Y K G + + +L+ M G+ D YTY T +S
Sbjct: 218 KMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRG 277
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
S +E + M+ + D V Y + + +GK +A+ +L++ E + +
Sbjct: 278 SLYEEAVHLFQQMKLE-GFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEAN-GFSPTSV 335
Query: 122 AYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN +++ Y K G ++ L + ++ K +K Y ++S K + A ++F E
Sbjct: 336 TYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEM 395
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN--- 237
+ + N LI ++ G + + + KL + +W L + QN
Sbjct: 396 RAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMD 455
Query: 238 SQIHKAVEAMKK 249
SQ+ + MK+
Sbjct: 456 SQVSGIFKEMKR 467
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 119/278 (42%), Gaps = 16/278 (5%)
Query: 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP 78
++K+ K G SL+ ++ +G+ D Y Y ++AY+ + + + M+ D
Sbjct: 164 IIKILGKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQD- 222
Query: 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDD 138
+ Y V N YGK+G+ + L ++ A YN +++ + ++
Sbjct: 223 GCNPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEE 282
Query: 139 VLRIWELYK----KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
+ +++ K KV N +V K + A K+ +E E+ + N
Sbjct: 283 AVHLFQQMKLEGFTPDKVTYNALLDVFG---KSRRPQEAMKVLQEMEANGFSPTSVTYNS 339
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
LI Y + GLLE+A +L KG + V ++ L +G+ + + A++ ++ A
Sbjct: 340 LISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRA-- 397
Query: 255 QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
V KP++ + A + K G+ G +++ +D
Sbjct: 398 ---VGCKPNICTFNALI---KMHGNRGKFAEMMKVFDD 429
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + + YNS++ +Y ++ NF+K + ++ E+ E G+ DR +Y T + AY
Sbjct: 640 MHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGR 699
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ +I + M+ D + D V Y T Y + +A+ +++ +Q G K + +
Sbjct: 700 MKEASRIFSEMK-DSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQ--GCKPDQNT 756
Query: 123 YNVILTLYGKYGKKDD 138
YN I+ Y K ++ +
Sbjct: 757 YNSIVDWYCKLDQRHE 772
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 126/305 (41%), Gaps = 48/305 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ G +N+++ Y + G+F++ ++ M E G+ D TY L+A A
Sbjct: 462 FKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALAR 521
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGY------------------GKV---GL 99
E +K+L ME D + + Y+++ + Y G V +
Sbjct: 522 GGLWEQSEKVLAEME-DGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAV 580
Query: 100 LDKALAML-KKSEEQIKGAKVN------------SAYNVILTLYGK---YGKKDDVLRIW 143
L K L ++ KS+ I+ + + N +L++YG+ K ++L
Sbjct: 581 LLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNF- 639
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
+++ Y +++ + ++ + +E+I E + + D N +I YCRNG
Sbjct: 640 -MHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNG 698
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA--------AYQ 255
+++A + + K V ++ Y +S +A++ ++ ++ Y
Sbjct: 699 RMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYN 758
Query: 256 TLVKW 260
++V W
Sbjct: 759 SIVDW 763
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 21/280 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q ++D G V YN ++ Y + + ++ +M+E G DR TYCT + +A +
Sbjct: 404 QMIKD-GCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKS 462
Query: 62 SDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D + M E D + D Y+ + N GK G L+ A + + ++ G
Sbjct: 463 G---FLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDE--GCVP 517
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N YN+++ L K + L+++ ++ + + Y V+ L LE AE IF
Sbjct: 518 NLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIF 577
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK-GREIHVKSWYYLATGYRQ 236
E + + D + L+D++ ++G ++KA H LK G + +V + L + + +
Sbjct: 578 IEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWY-HAMLKAGLKPNVPTCNSLLSAFLR 636
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVES----LAACLD 272
Q+ A + ++ +L KPS+++ L+ C D
Sbjct: 637 VHQLSDAYQLLQSMLT-----FGLKPSLQTYTLLLSCCTD 671
Score = 37.4 bits (85), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 46 YDRYTYCTRLSAYADASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDK 102
+D +TY T + A I+K+L M D PNV V Y + + YG+ L
Sbjct: 377 HDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNV----VTYNRIIHSYGRANYLQD 432
Query: 103 ALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNV 160
A+ + K+ +E G + + Y ++ ++ K G D + ++E + A + Y +
Sbjct: 433 AVNVFKQMQE--AGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVM 490
Query: 161 ISSLLKLDDLESAEKIF 177
I+ L K L +A ++F
Sbjct: 491 INCLGKAGHLNAAHRLF 507
>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 111/277 (40%), Gaps = 40/277 (14%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
T YN++LK Y K G+ + + ++ EM E G+ D TY + AY A E +L
Sbjct: 304 TRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLK 363
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYG 131
MEAD V +++ + G+ G KA A+L+ E G + + YNV++ +G
Sbjct: 364 EMEAD-GVKPSSYVFSRILAGFRDRGDWQKAFAVLR--EMHASGVQPDRHFYNVMIDTFG 420
Query: 132 KY-----------------------------------GKKDDVLRIW-ELYKKAVKVLNN 155
KY G+ D + ++ E+ +
Sbjct: 421 KYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTT 480
Query: 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215
Y +I+ L + + E + E + Q L + L+DVY R+G ++A + +
Sbjct: 481 TYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM 540
Query: 216 KLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
K G + ++ L Y Q A+ +K + A
Sbjct: 541 KADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRA 577
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 86/196 (43%), Gaps = 4/196 (2%)
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D D ++++L + D + D +++ + + + + L D AL +L S + I
Sbjct: 210 DPPDAAILERLLGDLR-DSRLEPDAPLFSDLISAFARAALPDAALELLA-SAQAIGLTPR 267
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKA--VKVLNNGYRNVISSLLKLDDLESAEKIF 177
++A +++ G G+ + ++ + A +K Y ++ +K+ L++AE +
Sbjct: 268 SNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVL 327
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + D + L+D Y R G E A L+ + G + + + G+R
Sbjct: 328 DEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDR 387
Query: 238 SQIHKAVEAMKKVLAA 253
KA ++++ A+
Sbjct: 388 GDWQKAFAVLREMHAS 403
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 115/264 (43%), Gaps = 19/264 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL TTV+YN+++ Y + + + +M+ I D TY ++
Sbjct: 186 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 245
Query: 68 DKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AY 123
+ ++ ME DP+V + T+ + YG G L+K +L S+ Q KG K + ++
Sbjct: 246 EDLVMEMEKSGVDPSVE----TFNTLIDAYGTAGQLEKCFTVL--SDMQQKGIKSDVISF 299
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
++ + K GK + + I ++ K V Y ++I + ++ D E A + E+ ++
Sbjct: 300 GSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKN 359
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ N L+ CR+ +++AE L+ + +G V S+ + + K
Sbjct: 360 SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDK 419
Query: 243 AVE--------AMKKVLAAYQTLV 258
A+E ++ L Y TLV
Sbjct: 420 ALELLQEMNKYGIRPTLRTYHTLV 443
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 15/252 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D+G+ + YN+M+ + K G+ E L +M +G + TY LS A
Sbjct: 41 EMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAG 100
Query: 63 DHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D+ +M+ A ++ D Y+ + +G + G ++ ML E +K +
Sbjct: 101 R---MDETRVLMDEMASHSMFPDGFTYSILFDGLTRTG---ESRTMLSLFAESLKKGVML 154
Query: 121 SAYNVILTLY-----GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
AY + L GK K + VL + L + Y +I+ ++ DL A
Sbjct: 155 GAYTCSILLNGLCKDGKVAKAEQVLEM--LVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 212
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
IFE+ +S+ + D N LI+ C+ ++ KAE+LV + G + V+++ L Y
Sbjct: 213 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 272
Query: 236 QNSQIHKAVEAM 247
Q+ K +
Sbjct: 273 TAGQLEKCFTVL 284
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 20/294 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G V YN +L + G ++ LM EM + + D +TY S D G
Sbjct: 81 GPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTY----SILFDGLTRTGE 136
Query: 68 DKILTMMEADP---NVALDWVIYATVGNGY---GKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + + A+ V L + + NG GKV ++ L ML +
Sbjct: 137 SRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL----VPTTV 192
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ Y + I+E K + ++ + Y +I+ L KL+ + AE + E
Sbjct: 193 IYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 252
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E + N LID Y G LEK +++ + KG + V S+ + + +N +I
Sbjct: 253 EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKI 312
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+AV + ++ Y+ + P+ + + +D + + GD A +E + + G
Sbjct: 313 PEAVAILDDMI--YKDVA---PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 106/243 (43%), Gaps = 7/243 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M+ + + YN+++ K K + L+ EME++G+ T+ T + AY A
Sbjct: 215 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 274
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS--EEQIKGAKV 119
E +L+ M+ + D + + +V + K G + +A+A+L ++ A+V
Sbjct: 275 GQLEKCFTVLSDMQ-QKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQV 333
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN I+ Y + G + + E K + V Y ++ L + ++ AE++
Sbjct: 334 ---YNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIY 390
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+Q L D N +I C G +KA L+ G +++++ L +
Sbjct: 391 TLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAG 450
Query: 239 QIH 241
++H
Sbjct: 451 RVH 453
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 87/202 (43%), Gaps = 3/202 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ G+ + + S++K + K G + +++ +M + + Y + + AY +
Sbjct: 284 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 343
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D E ++ M+ + V+ V Y + G + +D+A ++ Q V
Sbjct: 344 SGDTEQAFLLVEKMK-NSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 402
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S YN I++ G D L + E+ K ++ Y ++S+L + E ++++
Sbjct: 403 S-YNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 461
Query: 180 WESQALCYDTRIPNFLIDVYCR 201
+ + + I ++D Y R
Sbjct: 462 MLHKNVEPSSSIYGIMVDAYVR 483
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 21/280 (7%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q ++D G V YN ++ Y + + ++ +M+E G DR TYCT + +A +
Sbjct: 404 QMIKD-GCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKS 462
Query: 62 SDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+D + M E D + D Y+ + N GK G L+ A + + ++ G
Sbjct: 463 G---FLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDE--GCVP 517
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
N YN+++ L K + L+++ ++ + + Y V+ L LE AE IF
Sbjct: 518 NLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIF 577
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK-GREIHVKSWYYLATGYRQ 236
E + + D + L+D++ ++G ++KA H LK G + +V + L + + +
Sbjct: 578 IEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWY-HAMLKAGLKPNVPTCNSLLSAFLR 636
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVES----LAACLD 272
Q+ A + ++ +L KPS+++ L+ C D
Sbjct: 637 VHQLSDAYQLLQSMLT-----FGLKPSLQTYTLLLSCCTD 671
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 46 YDRYTYCTRLSAYADASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDK 102
+D +TY T + A I+K+L M D PNV V Y + + YG+ L
Sbjct: 377 HDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNV----VTYNRIIHSYGRANYLQD 432
Query: 103 ALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNV 160
A+ + K+ +E G + + Y ++ ++ K G D + ++E + A + Y +
Sbjct: 433 AVNVFKQMQE--AGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVM 490
Query: 161 ISSLLKLDDLESAEKIF 177
I+ L K L +A ++F
Sbjct: 491 INCLGKAGHLNAAHRLF 507
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 130/302 (43%), Gaps = 28/302 (9%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + G+ YN++L + G +E+ + L EME D +Y + L AYA+A
Sbjct: 481 KRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANA 540
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYA---TVGNGYGKVGLLDKA----LAMLKKSEEQI 114
+ +DK+ ++ E IYA NG K +L + L+ +K+ ++
Sbjct: 541 ---KKLDKMKSLSED---------IYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLEL 588
Query: 115 KGAKVN---SAYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDL 170
+ + + + N ++++YGK G V I L K+ ++ + Y +++ +L D
Sbjct: 589 RRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDC 648
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
E E I E +S D N +I Y R G +++A L + K G + ++
Sbjct: 649 EKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIF 708
Query: 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
Y NS +A++ L Y KP+ + L + G I ++FI L
Sbjct: 709 VKSYVANSMFEEAID-----LVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNL 763
Query: 291 ND 292
+
Sbjct: 764 PE 765
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 5/208 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR G V NS+L +Y K +++ ++ EME+ G TY + +S+Y
Sbjct: 272 EMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDG 331
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
E ++ ME + D + Y T+ +G + G +D A+ +E G K N
Sbjct: 332 LLEEATQLKEEMEVK-GIEPDVITYTTLVSGLDRAGKIDAAIGTY--NEMLRNGCKPNLC 388
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIFEEW 180
YN ++ L+G GK +++ +++ + A V + N + ++ + L++ +F+E
Sbjct: 389 TYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEM 448
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ + LI Y R GL ++A
Sbjct: 449 KKSGYVPERDTYVSLISSYSRCGLFDQA 476
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 119/290 (41%), Gaps = 39/290 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
++M G+ V YN +L +Y K ++++ +L+ M ++GI DRYTY T +S
Sbjct: 199 FRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALVDSMRKDGIPLDRYTYNTLISCCR 258
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ ++ K+ M A D V ++ + YGK D+A+ +LK+ E+ V
Sbjct: 259 RRALYKEAAKVFDEMRAA-GFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSV 317
Query: 120 NSAYNVILTLYGK----------------YGKKDDVLRIWELYK---------KAVKVLN 154
+ YN +++ Y K G + DV+ L A+ N
Sbjct: 318 VT-YNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYN 376
Query: 155 NGYRN-------VISSLLKLDDLESAEK----IFEEWESQALCYDTRIPNFLIDVYCRNG 203
RN ++L+KL + +F+E S D N L+ V+ +NG
Sbjct: 377 EMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNG 436
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
L + + K G ++ L + Y + +A+E K+++ A
Sbjct: 437 LDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEA 486
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 94/233 (40%), Gaps = 32/233 (13%)
Query: 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM 106
D Y +SA + AS + M A+ V V Y V + Y K+ + K +
Sbjct: 175 DASAYTALISALSRASRFRDAVAVFRRMVAN-GVCPALVTYNVVLHVYSKIAVPWKEVLA 233
Query: 107 LKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN----GY---RN 159
L S + YN +++ R LYK+A KV + G+ +
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLIS----------CCRRRALYKEAAKVFDEMRAAGFEPDKV 283
Query: 160 VISSLL----KLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNH 214
++SLL K + A + +E E Q C + + N LI Y ++GLLE+A L
Sbjct: 284 TLNSLLDVYGKARRYDEAIGVLKEME-QGGCPPSVVTYNSLISSYVKDGLLEEATQLKEE 342
Query: 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAV--------EAMKKVLAAYQTLVK 259
++KG E V ++ L +G + +I A+ K L Y L+K
Sbjct: 343 MEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIK 395
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 119/301 (39%), Gaps = 14/301 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
KM+ + T N +L + + G + + +M G +TY +
Sbjct: 86 FSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCK 145
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E + M+ + D V Y ++ +GYGKVG LD + E++K
Sbjct: 146 EGDIEAASGLFEEMKFR-GLIPDTVTYNSMIDGYGKVGRLDDTVYFF----EEMKSMSCE 200
Query: 121 S---AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN ++ + K+GK L + E+ + +K Y ++ + K D ++ A K
Sbjct: 201 PDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKF 260
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ + L + L+D YC+ G L A L + G E +V ++ L G
Sbjct: 261 YVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCD 320
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+I +A E K++ A P++ S A + F ++ A ++ + +G
Sbjct: 321 VERIKEAEELFGKMVTA-----GVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIK 375
Query: 297 P 297
P
Sbjct: 376 P 376
>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
Length = 870
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 15/218 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M GL +NS+L + G+ E ++ EM G D YTY T + A
Sbjct: 303 FRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICK 362
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +++ MEA+ PNV V Y+T+ +G+ K+ D+AL K E++K
Sbjct: 363 CGNMGLALQVVLDMEANNAKPNV----VTYSTLMDGFSKLEKYDEAL----KLREKMKSL 414
Query: 118 KVN---SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
++ YN +L +Y K GK D++ + E+ K ++ Y ++I+ K L+
Sbjct: 415 RIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMV 474
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ ++ +Q + + LID+Y + G+ A N+
Sbjct: 475 AFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNV 512
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 44/202 (21%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM+ L + V YN++L +Y KTG ++++ ++ EME+ GI D TY + +
Sbjct: 409 EKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLI------ 462
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
NGYGK G LD +++ Q V +
Sbjct: 463 ------------------------------NGYGKQGRLDMVAFLVQDMRAQGVAPSVLT 492
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y+ ++ +Y K G D ++ +K KA VL + + I +L K +E A +
Sbjct: 493 -YSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVL---FSSFIDTLAKNGLVECALSLL 548
Query: 178 EEWESQALCYDTRIPNFLIDVY 199
+E + + N +ID +
Sbjct: 549 DEMMKMGIKPNVVTYNTIIDAF 570
>gi|302753488|ref|XP_002960168.1| hypothetical protein SELMODRAFT_402234 [Selaginella moellendorffii]
gi|300171107|gb|EFJ37707.1| hypothetical protein SELMODRAFT_402234 [Selaginella moellendorffii]
Length = 585
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 27/297 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M K+R+LGL + M L++ G ++ +L+ E G+ + + T L
Sbjct: 171 MDKIRELGLV-SAFSLEQMTLLFHYLGLERRIPALVVEARSLGLHFHPHFLNTHLWIKRR 229
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D G+++I+ +E N W Y + + Y + GL +KA A L +E I+ +
Sbjct: 230 HGDLSGMEEIVEELELMGRSNA---WT-YIFIASAYIQAGLPEKAHAALGAAEAGIRNGR 285
Query: 119 V---NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
YN IL LYG + + R+W + V + + +I +L ++ AE+
Sbjct: 286 FKKQRKVYNKILLLYGLLKDTEGIERVWGILNSRPLVAVHNHLFMIEALGSAGNIGRAEE 345
Query: 176 IFEEWESQALCYDTR--IPNFLI--DVYCRNGLLEKA-ENLVNHE-KLKGREIHVKSWYY 229
IFEE C R F++ Y +NGL++KA E L ++ K K R + + ++Y
Sbjct: 346 IFEELRK---CRGVRKEYRQFIVMAGAYTKNGLMDKATEVLYDYPAKYKARPV-PELYHY 401
Query: 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS---VESLAACLDYFKDEGDIGGA 283
GY + ++ A+EA ++ Q+LV+++ + E++ + + + GD+ A
Sbjct: 402 FIKGYIKRNEKDWAIEAYEEG----QSLVRYRSTKLWYETMLEVMSIYAERGDVTSA 454
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 119/280 (42%), Gaps = 51/280 (18%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+K+ D +R V++N M++ Y + G + +L +ME +G+T DR T T ++A + A
Sbjct: 104 RKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRA 163
Query: 62 SD-------HEGIDKILTMMEADPNVALD-------------------------WVIYAT 89
D H +D + N LD W I +
Sbjct: 164 RDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVS 223
Query: 90 VGNGYGKVGLLDKALAMLKKSEEQ---IKGAKVNSAYNVILTLYGKYGKKDDVLRIW-EL 145
GYG G LDKA + + +E+ + A +N+ ++G ++ L ++ ++
Sbjct: 224 ---GYGLAGQLDKARVLFNQCKEKDLILWTAMINACV--------QHGCFEEALTLFRDM 272
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+ V+ +++ L L+ E I + E + + D + LID+Y + G +
Sbjct: 273 QMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHI 332
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
EK +L +++GR+ +W + G N Q +A+E
Sbjct: 333 EK--SLEVFWRMQGRD--ATAWTAIICGLATNGQAGRALE 368
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 111/265 (41%), Gaps = 39/265 (14%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD------- 63
R VV+N ML+ Y + G + +L EME +T DR T T L+A + A D
Sbjct: 110 RAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKI 169
Query: 64 HEGIDKILTMMEADPNVALDW----------------------VIYATVGNGYGKVGLLD 101
H +D + N LD V + T+ +GY G +D
Sbjct: 170 HAYMDGVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVD 229
Query: 102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNV 160
KA + + E K + ++ Y ++G + L ++ ++ ++ +
Sbjct: 230 KARLLFHQCTE-----KDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTL 284
Query: 161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220
++ L L+ + I + E + + D + LID+Y + G +EK+ + E+++GR
Sbjct: 285 LTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVF--ERMEGR 342
Query: 221 EIHVKSWYYLATGYRQNSQIHKAVE 245
+ K+W + G N Q +A+E
Sbjct: 343 D--TKAWTAIICGLATNGQAGRALE 365
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 134/315 (42%), Gaps = 17/315 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G+A YN+++ + +E+ + EM+ G + D+ TY L Y +
Sbjct: 282 MKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRR 341
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
++L MEA A V Y ++ + Y + GLLD+A+ + KS+ KG K +
Sbjct: 342 PREAMEVLKEMEAS-GFAPSIVTYNSLISAYARDGLLDEAMEL--KSQMVKKGIKPDVFT 398
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD----DLESAEKIFE 178
Y +L+ + K GK D ++++E + A N N +L+K+ + K+FE
Sbjct: 399 YTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFN---ALIKMHGNRGNFVEMMKVFE 455
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + D N L+ V+ +NG+ + + K G ++ L + Y +
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+A+ +++L A T P + + A L G +E + + D P
Sbjct: 516 FFDQAMAIYRRMLDAGVT-----PDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPN 570
Query: 299 DLQ-DKLLDNVQNGK 312
+L LL NGK
Sbjct: 571 ELTYCSLLHAYANGK 585
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 7/211 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++M+ G + V YN++L +Y K+ + ++ EME +G TY + +SAYA
Sbjct: 314 FEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYAR 373
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D E ++ M++ + D Y T+ +G+ K G D A+ + + E ++ G +
Sbjct: 374 DGLLDEAMELKSQMVKK--GIKPDVFTYTTLLSGFEKTGKDDYAMKVFE--EMRVAGCQP 429
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIF 177
N +N ++ ++G G ++++++E K V + N + ++ + ++S +F
Sbjct: 430 NICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVF 489
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+E + + N LI Y R G ++A
Sbjct: 490 KEMKRAGFVPERDTFNTLISAYSRCGFFDQA 520
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 134/312 (42%), Gaps = 15/312 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M D G+ YN++L + G +E+ + ++ EM++ + TYC+ L AYA+
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANG 584
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
+ E + + + + +P V+ T+ Y K LL + + EQ
Sbjct: 585 KEVERMSALAEEIYSGIIEPQA----VLLKTLVLVYSKSDLLTETERAFLELREQGFSPD 640
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIF 177
+ + N ++++YG+ I K + + Y +++ + + E +E I
Sbjct: 641 ITT-LNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDIL 699
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E ++ + D N +I YCRNG +++A + K G V ++ Y +
Sbjct: 700 REIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASD 759
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE-LLNDKGFI 296
S +A++ +K Y + KP+ + + +D+F A +FI L N +
Sbjct: 760 SMFIEAIDVVK-----YMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRNLDPSV 814
Query: 297 PTDLQDKLLDNV 308
D + +LL+ +
Sbjct: 815 TKDEERRLLERL 826
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 115/270 (42%), Gaps = 19/270 (7%)
Query: 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW 84
K G SL+H++ +G+ D Y Y + ++AYA + + +E +
Sbjct: 197 KEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE-GCRPTL 255
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144
+ Y + N YGK+G+ +A L S + A YN +++ + ++ ++E
Sbjct: 256 ITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFE 315
Query: 145 LYKKAV----KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
K A KV N +V K A ++ +E E+ N LI Y
Sbjct: 316 EMKAAGFSPDKVTYNALLDVYG---KSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYA 372
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260
R+GLL++A L + KG + V ++ L +G+ + + A++ +++ A
Sbjct: 373 RDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVA-----GC 427
Query: 261 KPSVESLAACLDYFKDEGDIGGAENFIELL 290
+P++ + A + + G NF+E++
Sbjct: 428 QPNICTFNALIKMHGNRG------NFVEMM 451
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 15/223 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G A + V YNS++ Y + G ++ L +M + GI D +TY T LS +
Sbjct: 349 LKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEK 408
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ K+ M PN+ + GN V ++ K E+IK
Sbjct: 409 TGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMM--------KVFEEIKIC 460
Query: 118 KVNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDLESA 173
+ +N +L ++G+ G +V +++ K+A V + + +IS+ + + A
Sbjct: 461 ECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQA 520
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
I+ + D N ++ R GL E++E ++ K
Sbjct: 521 MAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK 563
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 22/252 (8%)
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDD 138
V +D Y ++ Y G +A+ + KK EE+ G + YNVIL +YGK G
Sbjct: 216 VHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE--GCRPTLITYNVILNVYGKMGMP-- 271
Query: 139 VLRIWELYKKAVKVLNNG--------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
W V + + Y +ISS + E A ++FEE ++ D
Sbjct: 272 ----WSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKV 327
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N L+DVY ++ +A ++ + G + ++ L + Y ++ + +A+E ++
Sbjct: 328 TYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQM 387
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQN 310
+ KP V + L F+ G A E + G P L +
Sbjct: 388 VKK-----GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHG 442
Query: 311 GKSNLETLRELY 322
+ N + +++
Sbjct: 443 NRGNFVEMMKVF 454
>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 121/297 (40%), Gaps = 48/297 (16%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+N ++K + GNF+K L+ M E G + D T+ + A ++L ++
Sbjct: 218 FNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQ 277
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGK-- 132
D + V Y +V +GY K G ++ A+++ E G + N+ YNV++ YGK
Sbjct: 278 RDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLE--SGTRPNTVTYNVLINGYGKAL 335
Query: 133 ---------------------------------YGKKDDVLRIW-ELYKKAVKVLNNGYR 158
G+ DD RIW E+ ++ +
Sbjct: 336 DMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFS 395
Query: 159 NVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
+I SL K + A I E + + T I N +ID+ C+ G +++A +V K
Sbjct: 396 IIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKE 455
Query: 218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP---SVESLAACL 271
KG ++ L G+ +I +A+ K++ A +P +V S +C+
Sbjct: 456 KGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEA-----GCRPDNITVNSFVSCV 507
>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 113/235 (48%), Gaps = 5/235 (2%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y++ + ++ K+G + + M+ + + + T+ + Y A D E + +
Sbjct: 163 VVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYE 222
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAM-LKKSEEQIKGAKVNSAYNVILTLYG 131
M ++L+ V Y + +G+ K G + +A M L+ E++++ + Y I+ +
Sbjct: 223 EMRR-VRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSL--VYTTIINGFF 279
Query: 132 KYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
+ G D+ ++ + ++ + +++ Y +IS L + L+ A +I E+ E L D
Sbjct: 280 QRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMM 339
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
I +++ Y ++G ++ A N+ + +G E V + + G +N Q+H+A+
Sbjct: 340 IFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIS 394
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 17/245 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+NS++ K G + ++H M G D +Y + + + D +L +
Sbjct: 59 FNSVVSFVCKLGQVKFAVDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSACLVLESLR 118
Query: 76 ADPNVAL--DWVIYATVGNGYGKVGLLDKAL----AMLKKSEEQIKGAKVNSAYNVILTL 129
A D V + T+ NG+ K+ +LD+ MLK + Y+ + +
Sbjct: 119 ASYGFTCKPDIVSFNTLFNGFSKMKMLDEVFVYMGVMLKCCSPNV------VTYSTWIDM 172
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
+ K G+ L+ + K+ N + +I K DLE ++EE + +
Sbjct: 173 FCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYEEMRRVRMSLN 232
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEA 246
LID +C+ G +++A + + ++ + S Y + G+ Q A++
Sbjct: 233 VVTYTALIDGFCKKGEMQRAGGM--YLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKF 290
Query: 247 MKKVL 251
+ K+L
Sbjct: 291 LAKML 295
>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 135/325 (41%), Gaps = 31/325 (9%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DASDHEGI 67
++ T V NS++ Y G F++ L+ EM I D YT+ + A + E
Sbjct: 242 ISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAK 301
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
I MM+ V D V Y+++ +GY V ++KA Y++++
Sbjct: 302 SGIAVMMKE--GVMPDVVTYSSLMDGYCLVNEVNKA----------------KHVYSIVI 343
Query: 128 TLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+ K D L + +E+ + + Y ++I L K + A ++ +E
Sbjct: 344 NGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQP 403
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D N LID C+N ++KA LV K +G ++ + ++ L G + ++ A
Sbjct: 404 ADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVI 463
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDK--- 303
+ +L L W ++ CL EG + AE + + D G +P + +
Sbjct: 464 FQDLLIKGYNLTVWTYTIMINGLCL-----EGLLNEAETLLSKMEDNGCVPDAVTCETII 518
Query: 304 --LLDNVQNGKSNLETLRELYGNSL 326
L +N +N ++ + LRE+ L
Sbjct: 519 RALFENDKNERAE-KLLREMIARGL 542
>gi|156070758|gb|ABU45173.1| unknown [Solanum melongena]
Length = 427
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 34/254 (13%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+R G+AR +++ LK+Y H+M++ G ++ LSA +
Sbjct: 107 IRSYGVAR---MFDHALKIY-------------HQMDDLGTPRSAISFNVLLSACMHSKL 150
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
++ + ++ + D V Y + Y ++GL + A+ K+ EE KG ++ + A
Sbjct: 151 YDRVAQLFDEIPVKYGFLPDKVSYGVLIRSYCEMGLPEMAMERFKEMEE--KGVEITAVA 208
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+ IL + K GK D+ R+W E+ + + G NV ++ E + + EE
Sbjct: 209 FTTILHSFYKKGKSDEAERVWNEMVSRGCGP-DVGAYNVKIMNIQGSKPEGVKALIEEMS 267
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW----YYLA------ 231
+ L DT N+L+ YC+N L+++A+ + K G + ++ +YL
Sbjct: 268 NAGLKPDTISYNYLMTCYCKNQLMDEAQKVYEDLKTNGCNPNAATFRTLIFYLCKKGRFE 327
Query: 232 TGY---RQNSQIHK 242
TGY R++ +HK
Sbjct: 328 TGYKVFRESVSVHK 341
>gi|414880641|tpg|DAA57772.1| TPA: hypothetical protein ZEAMMB73_835994 [Zea mays]
Length = 728
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/338 (21%), Positives = 147/338 (43%), Gaps = 26/338 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+A T +Y +++K Y K+ E+ + L EM+E + TY + AY+
Sbjct: 372 EMEKRGIASNTSIYETLMKAYCKSNQIEEAEGLFVEMKEKSLQATTTTYNILMDAYSRRL 431
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL--AMLKKSEEQIKGAKVN 120
E ++ +L M+ D + Y + + YG+ + A L+ + IK ++
Sbjct: 432 QTEVVESLLLEMQ-DLGIRPSARSYNCLISAYGRQKKMSGKAENAFLRMKRDGIK--PLS 488
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S+YN +L Y G + I+ ++ ++ +K Y ++ +L + D EK+ E
Sbjct: 489 SSYNALLFAYAANGLHEKAHAIYMDMKREGLKPTLETYTALLDTLRRAGD---TEKLMET 545
Query: 180 WES---QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
W++ + I + +ID ++GL + +++ G + V ++ L Y +
Sbjct: 546 WKTMVDEKFGGTRVIFHMVIDCLAKHGLYLQVRDVIYEFGKMGLKPTVMTYNILMNAYGR 605
Query: 237 NSQIHKAVEAMKKVLA--------AYQTLVKWKPSVESLAACLDYFKD---EGDIGGAEN 285
Q +K + +K++ A Y T++ V + Y K G I +
Sbjct: 606 GGQHYKLPQLLKEMTALELKPDSITYCTMIYAYARVRDFSRAFYYHKQMVRNGQIPDPRS 665
Query: 286 FIELLN--DKGFIPTDLQDK-LLDNVQNGKSNLETLRE 320
+ +LLN D +++DK + + GKS L+ +E
Sbjct: 666 YKKLLNTLDVKAARKNIKDKSAIQGIIKGKSGLKPRKE 703
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 113/274 (41%), Gaps = 59/274 (21%)
Query: 51 YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS 110
Y +SA A ++G +I +ME + NV D +G ++ L ++KKS
Sbjct: 279 YNAAISAVAYCRRYDGAWEIFELMEKN-NVQPD----------HGTSAIM---LNIMKKS 324
Query: 111 EEQIKGA----------KVNSAYNV---ILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNG 156
+ K A VN +++V ++ ++ G K + L I E+ K+ + +
Sbjct: 325 KVSAKDAWEFFKRMNRKGVNWSFDVGAALINIFCSDGLKKEALIIQSEMEKRGIASNTSI 384
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y ++ + K + +E AE +F E + ++L T N L+D Y R E E+L+ +
Sbjct: 385 YETLMKAYCKSNQIEEAEGLFVEMKEKSLQATTTTYNILMDAYSRRLQTEVVESLLLEMQ 444
Query: 217 LKGREIHVKSWYYLATGY-RQNSQIHKAVEA--------MKKVLAAYQTLV--------- 258
G +S+ L + Y RQ KA A +K + ++Y L+
Sbjct: 445 DLGIRPSARSYNCLISAYGRQKKMSGKAENAFLRMKRDGIKPLSSSYNALLFAYAANGLH 504
Query: 259 -------------KWKPSVESLAACLDYFKDEGD 279
KP++E+ A LD + GD
Sbjct: 505 EKAHAIYMDMKREGLKPTLETYTALLDTLRRAGD 538
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 115/264 (43%), Gaps = 19/264 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL TTV+YN+++ Y + + + +M+ I D TY ++
Sbjct: 364 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423
Query: 68 DKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AY 123
+ ++ ME DP+V + T+ + YG G L+K +L S+ Q KG K + ++
Sbjct: 424 EDLVMEMEKSGVDPSVE----TFNTLIDAYGTAGQLEKCFTVL--SDMQQKGIKSDVISF 477
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
++ + K GK + + I ++ K V Y ++I + ++ D E A + E+ ++
Sbjct: 478 GSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKN 537
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ N L+ CR+ +++AE L+ + +G V S+ + + K
Sbjct: 538 SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDK 597
Query: 243 AVE--------AMKKVLAAYQTLV 258
A+E ++ L Y TLV
Sbjct: 598 ALELLQEMNKYGIRPTLRTYHTLV 621
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 15/252 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D+G+ + YN+M+ + K G+ E L +M +G + TY LS A
Sbjct: 219 EMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAG 278
Query: 63 DHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D+ +M+ A ++ D Y+ + +G + G ++ ML E +K +
Sbjct: 279 R---MDETRVLMDEMASHSMFPDGFTYSILFDGLTRTG---ESRTMLSLFAESLKKGVML 332
Query: 121 SAYNVILTLY-----GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
AY + L GK K + VL + L + Y +I+ ++ DL A
Sbjct: 333 GAYTCSILLNGLCKDGKVAKAEQVLEM--LVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 390
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
IFE+ +S+ + D N LI+ C+ ++ KAE+LV + G + V+++ L Y
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 450
Query: 236 QNSQIHKAVEAM 247
Q+ K +
Sbjct: 451 TAGQLEKCFTVL 462
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 121/288 (42%), Gaps = 20/288 (6%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V YN +L + G ++ LM EM + + D +TY S D G + +
Sbjct: 265 VTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTY----SILFDGLTRTGESRTMLS 320
Query: 74 MEADP---NVALDWVIYATVGNGY---GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ A+ V L + + NG GKV ++ L ML + YN ++
Sbjct: 321 LFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL----VPTTVIYNTLI 376
Query: 128 TLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
Y + I+E K + ++ + Y +I+ L KL+ + AE + E E +
Sbjct: 377 NGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVD 436
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
N LID Y G LEK +++ + KG + V S+ + + +N +I +AV
Sbjct: 437 PSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAI 496
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ ++ Y+ + P+ + + +D + + GD A +E + + G
Sbjct: 497 LDDMI--YKDVA---PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG 539
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 106/244 (43%), Gaps = 7/244 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ + + YN+++ K K + L+ EME++G+ T+ T + AY
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 451
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS--EEQIKGAK 118
A E +L+ M+ + D + + +V + K G + +A+A+L ++ A+
Sbjct: 452 AGQLEKCFTVLSDMQQK-GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 510
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIF 177
V YN I+ Y + G + + E K + V Y ++ L + ++ AE++
Sbjct: 511 V---YNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 567
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+Q L D N +I C G +KA L+ G +++++ L +
Sbjct: 568 YTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASA 627
Query: 238 SQIH 241
++H
Sbjct: 628 GRVH 631
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 98 GLLDKALAMLKKSEEQIKGAKVNSA--YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLN 154
G LD ALAM+++ +GA A YNV++ + GK D L+++ E+ V
Sbjct: 171 GDLDVALAMVRRMGRS-EGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNW 229
Query: 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
Y +I +K DLE+ ++ ++ + N L+ CR G +++ L+
Sbjct: 230 ITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLM-- 287
Query: 215 EKLKGREIHVKSWYY------LATGYRQNSQIHKAVEAMKK--VLAAYQTLVKWKPSVES 266
+++ + + Y L + + E++KK +L AY +
Sbjct: 288 DEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAY-----------T 336
Query: 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY 322
+ L+ +G + AE +E+L G +PT + + + + NG + LR +
Sbjct: 337 CSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTV---IYNTLINGYCQVRDLRGAF 389
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 87/202 (43%), Gaps = 3/202 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ G+ + + S++K + K G + +++ +M + + Y + + AY +
Sbjct: 462 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ D E ++ M+ + V+ V Y + G + +D+A ++ Q V
Sbjct: 522 SGDTEQAFLLVEKMK-NSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 580
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S YN I++ G D L + E+ K ++ Y ++S+L + E ++++
Sbjct: 581 S-YNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 639
Query: 180 WESQALCYDTRIPNFLIDVYCR 201
+ + + I ++D Y R
Sbjct: 640 MLHKNVEPSSSIYGIMVDAYVR 661
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 9/242 (3%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
+GL+ YN ++K+ + F+K L++ M E G + D ++Y T +++ A
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSD 202
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN---SAY 123
K+ M + V D Y + +G+ K G + A + E +KG V +Y
Sbjct: 203 ALKLFDEM-PERGVTPDVACYNILIDGFFKKGDILNASEIW---ERLLKGPSVYPNIPSY 258
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWES 182
NV++ K GK D+ IW KK + + Y +I L +L+ A ++++E
Sbjct: 259 NVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAE 318
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D + N +++ Y R G +E+ L + +G V S+ L G +N+++ +
Sbjct: 319 NGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDE 377
Query: 243 AV 244
A+
Sbjct: 378 AI 379
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 117/248 (47%), Gaps = 12/248 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGI-TYDRYTYCTRLSAYAD 60
++M + G++ VVYN+ML Y + G E+ L ME+ G T Y R + +
Sbjct: 314 KEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR-GLFEN 372
Query: 61 ASDHEGIDKILTMMEADP--NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A +D+ +++ E P + D + Y + +G K G L+KAL++L+++E +G
Sbjct: 373 AK----VDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENG-RGDL 427
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
AY+ ++ + G+ D+V + ++ K K + VI+ ++ LE A + F
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFF 487
Query: 178 EEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
S+ C+ T + N LI+ + +A LV KG + ++ ++ L G Q
Sbjct: 488 GNMVSKG-CFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQ 546
Query: 237 NSQIHKAV 244
++ A+
Sbjct: 547 GKKLDMAL 554
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/354 (18%), Positives = 129/354 (36%), Gaps = 42/354 (11%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + G + Y +++ K G L EM E G+T D Y + + D
Sbjct: 175 MWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD 234
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-- 121
+I + P+V + Y + NG K G D++ + + ++ +G + +
Sbjct: 235 ILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYS 294
Query: 122 --------------------------------AYNVILTLYGKYGKKDDVLRIWELYKKA 149
YN +L Y + G+ ++ L +W++ +K
Sbjct: 295 TLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKE 354
Query: 150 VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
Y +I L + ++ A I+E + C D+ L+ C+NG L KA
Sbjct: 355 GCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 414
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA 269
+++ + ++ ++ + G + ++ + + ++ T KP+ A
Sbjct: 415 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQM-----TKHGCKPNPHVCNA 469
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYG 323
++ F + A F + KG PT + + + NG S E E Y
Sbjct: 470 VINGFVRASKLEDALRFFGNMVSKGCFPTVVT---YNTLINGLSKAERFSEAYA 520
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 20/231 (8%)
Query: 75 EADPNVALDWVIYATVGNGYGKVG---------LLD-KALAMLKKSEEQIKGAKVNSAYN 124
E +P+ AL T GY L D K +A + + E I+ K +
Sbjct: 20 EKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPED 79
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NGYRNVISSLLKLDDLESAEKIFEE 179
V LT+ Y K + +++++ ++ Y +++++L++ + + AE F
Sbjct: 80 VALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLY 139
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+E+ L + + N LI + CR +KA+ L+N +G V S+ L +N
Sbjct: 140 FETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGY 199
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ A++ ++ T P V +D F +GDI A E L
Sbjct: 200 MSDALKLFDEMPERGVT-----PDVACYNILIDGFFKKGDILNASEIWERL 245
>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 120/305 (39%), Gaps = 40/305 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ + + + YN ++K Y E L+ EM G + D+ +Y T +
Sbjct: 227 LERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCK 286
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ++ M D N+ D V Y T + K G D+AL L+++EE
Sbjct: 287 EKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEE-------- 338
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ +V GY ++ S + ++ A++I E
Sbjct: 339 ---------------------------RRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEM 371
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S+ D +I+ C+ +++A+ ++ G + + S+ L G +N
Sbjct: 372 FSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNS 431
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+A E M + W P+ + + + F+ EG A + + + KGF PT +
Sbjct: 432 LEAREMMNMSEEXW-----WIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPV 486
Query: 301 QDKLL 305
+ LL
Sbjct: 487 EINLL 491
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ T + +N+ML +K G+ E++D + EM+ I + TY ++ ++ + E
Sbjct: 269 GIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEA 328
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA--KVNSAYNV 125
+ M+ + + + GY K GL D+A + ++E + S YN+
Sbjct: 329 RRFHGDMQRS-GFPVTPYSFNPLIEGYCKQGLFDEAWGV---TDEMLNAGIYPTTSTYNI 384
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ ++G+ DD EL Y ++ +K+ A +F++ ++ +
Sbjct: 385 YIRALCEFGRIDDA---RELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNI 441
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATGYRQNSQIHKA 243
N LID C +G LE A+ L E++ + I+ V ++ L G+ +N + A
Sbjct: 442 NPSIVTYNTLIDGLCESGNLEGAQRL--KEEMTSQLIYPDVITYTTLLKGFVKNGNLSMA 499
Query: 244 VEAMKKVL 251
E ++L
Sbjct: 500 TEIYDEML 507
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ Y ++LK + K GN + EM GI D Y Y TR D E ++
Sbjct: 480 VITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHE 539
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
M A+ + A D IY +G KVG L+KA+ +K
Sbjct: 540 EMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRK 576
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 126/299 (42%), Gaps = 16/299 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM+ L + YN++L Y K G F+ ++ +ME+NG+ D YTY +
Sbjct: 248 IHKMKSCSLP-NVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCK 306
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+L M D N+A D Y T+ G+ + A+ + + Q G K +
Sbjct: 307 MKRSTHAYLLLKRMRGD-NLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQ--GLKPS 363
Query: 121 SA-YNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
A Y ++ Y + G D+ LR+ +E+ VK Y +++ + A +++
Sbjct: 364 LATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLNG-----SVHEAFSVYD 418
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E D L+ C+ G L +A+ ++ I K+ L G +
Sbjct: 419 NMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNALLLGICNHG 478
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +A++ +K++ + + P + + L F +G I A ++++ +KG +P
Sbjct: 479 SLDEALDLCEKMVT-----INFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVP 532
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 118/302 (39%), Gaps = 7/302 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM + Y +L + + G L+ M E G+ D TY L
Sbjct: 488 EKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKE 547
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ + + + D + Y ++ NGY K G L K + M Q K +
Sbjct: 548 GQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLKAGKLHK-VEMTIYDMNQNKVYPNPA 606
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+YN+++ + K G + ++ ++ +K +K N YR +I L K +E A K ++
Sbjct: 607 SYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKM 666
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + D + LI+ + + A L N K K++ + G + + +
Sbjct: 667 VLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWL 726
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+ + ++ ++ + +P A ++ GDI GA E + G +P ++
Sbjct: 727 QHSCDVLRDMVES-----GLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGIVPAEV 781
Query: 301 QD 302
D
Sbjct: 782 AD 783
>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 938
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 114/259 (44%), Gaps = 26/259 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M +G+ TV +N+++ + K GNF + +L+ E+ E + T+ +S+Y +
Sbjct: 184 LSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISE----LNLITHTILISSYYN 239
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + + M DP+V V ++++ N K G + + +L++ EE V
Sbjct: 240 LHAIEEAYRDMVMSGFDPDV----VTFSSIINRLCKDGKVMEGGLLLREMEEM----GVY 291
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ TL K D LY + + V Y +++ L K DL AEK
Sbjct: 292 PNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKT 351
Query: 177 FEEWESQALCYDTRIPNF-----LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
F + L D +PN L+D C+ G L AE ++ K +V ++ +
Sbjct: 352 F-----KMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMI 406
Query: 232 TGYRQNSQIHKAVEAMKKV 250
GY + + +AV M+K+
Sbjct: 407 NGYVKKGMLEEAVSLMRKM 425
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 13/200 (6%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG- 66
G+ + VYN+++ K G K +M +ME G D T+ + Y S H G
Sbjct: 673 GIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGS-HVGK 731
Query: 67 -IDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
+ MMEA PNVA Y T+ G GL+ + L SE + +G + +
Sbjct: 732 ALSTYSMMMEAGISPNVA----TYNTIIRGLSDAGLIKEVEKWL--SEMKSRGMRPDDFT 785
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN +++ K G K + + I+ E+ + + Y +IS K+ + A ++ +E
Sbjct: 786 YNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQATELMKEMG 845
Query: 182 SQALCYDTRIPNFLIDVYCR 201
+ + +T +I C+
Sbjct: 846 KRRVSPNTSTYCTMISGLCK 865
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 5/169 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+ M G TV +N+++ Y+ + K S M E GI+ + TY T + +D
Sbjct: 701 MEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSD 760
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKV 119
A + ++K L+ M++ + D Y + +G K+G +K +M E G
Sbjct: 761 AGLIKEVEKWLSEMKSR-GMRPDDFTYNALISGQAKIG--NKKESMTIYCEMIADGLVPK 817
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKL 167
S YNV+++ + K GK + E+ K+ V + Y +IS L KL
Sbjct: 818 TSTYNVLISEFAKVGKMLQATELMKEMGKRRVSPNTSTYCTMISGLCKL 866
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 73/375 (19%), Positives = 150/375 (40%), Gaps = 56/375 (14%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++MR +G+ + ++++ + G +++ L+ +M G+T D Y + + +
Sbjct: 458 KEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSLIDVFFKG 517
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNG---YGKVGLLDKALAMLKKSEEQIKGAK 118
D E M+ + + D V Y + +G +GKVG D A +++ KG +
Sbjct: 518 GDEEAALSWAEEMQ-EKEMPWDVVSYNVLISGLLKFGKVG-ADWAYKGMRE-----KGIE 570
Query: 119 VNSA-YNVILTLYGKYGKKDDVLRIWE-------------------------LYKKAVKV 152
+ A +N+++ K G + +L++W+ K+A+ +
Sbjct: 571 PDIATFNIMMNSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDI 630
Query: 153 LNNG-----YRNVISSLLKLD---DLESAEKIFEEWE---SQALCYDTRIPNFLIDVYCR 201
L+ + N+ + + LD + A+ IF+ E S + ++ N LI C+
Sbjct: 631 LDQMMFMEIHPNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCK 690
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
G+ KA ++ + +G ++ L GY S + KA+ ++ A
Sbjct: 691 LGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEA-----GIS 745
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQ----NGKSNLET 317
P+V + + D G I E ++ + +G P D L + Q N K ++
Sbjct: 746 PNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTI 805
Query: 318 LRELYGNSLAGNEET 332
E+ + L T
Sbjct: 806 YCEMIADGLVPKTST 820
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 143/333 (42%), Gaps = 44/333 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M + + V Y+SM+ Y K G E+ SLM +ME+ + + +TY T +
Sbjct: 387 ITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFK 446
Query: 61 ASDHE------------GIDKILTMMEADPN----------------------VALDWVI 86
A E G+++ +++A N V LD +
Sbjct: 447 AGKQEVASEMSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDHIN 506
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY 146
Y ++ + + K G + AL+ ++ +E+ V S YNV+++ K+GK +
Sbjct: 507 YTSLIDVFFKGGDEEAALSWAEEMQEKEMPWDVVS-YNVLISGLLKFGKVGADWAYKGMR 565
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
+K ++ + +++S K D E K++++ +S + I N ++ + C G ++
Sbjct: 566 EKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMK 625
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW--KPSV 264
+A +++ +++ EIH Y + S HK +A+ K ++TL+ + K S
Sbjct: 626 EAIDIL--DQMMFMEIHPNLTTYRI--FLDMSSKHKRADAIFK---THETLLSYGIKLSR 678
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + G A +E + +GF+P
Sbjct: 679 QVYNTLIATLCKLGMTRKAAMVMEDMEARGFVP 711
>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Glycine max]
Length = 878
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 137/330 (41%), Gaps = 48/330 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+++M G + YNS+LK G ++ L+ EME GI D YTY T + A
Sbjct: 284 LEEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLAEMEWKGIGRDVYTYNTYVDALCK 343
Query: 60 ----DASDHEGIDKILTMMEADPNVA-------------------------------LDW 84
D + H ID + PNV LD
Sbjct: 344 GGRMDLARH-AIDVEMPAKNIWPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDR 402
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSE-EQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW 143
V Y T+ Y +G ++A+ K+ E IK V YN ++ YG++ K +V +++
Sbjct: 403 VSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVV--TYNALIEGYGRHNKYVEVQKLF 460
Query: 144 ELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
+ KA ++ N Y +I K A ++ E + + + D + LID C+
Sbjct: 461 D-EMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCK 519
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
NGL+E + L++ KG +V ++ + ++ Q+ A+ A + + K
Sbjct: 520 NGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFKIGQQLPALECAVDTPFQANEHQI--K 577
Query: 262 PSVESLAACLDYFKDE-GDIGGAENFIELL 290
PS L + F+D+ DIG + +++L
Sbjct: 578 PSSSRL--IVGNFQDQKTDIGNNDEIMKML 605
>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 13/220 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V YNS++ Y G ++ L+ M G+ T C+ + Y H I +
Sbjct: 275 AVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMPSLVT-CSSVMDYL--CKHGKIKEAEE 331
Query: 73 MM--EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN--SAYNVILT 128
M A D V+Y+ + +GY G L K M+ E + V +N+++
Sbjct: 332 MFYSRAVNGRKPDIVLYSIMLHGYAIEGSLVK---MIDLCEVMARDGVVPDLPCFNILIN 388
Query: 129 LYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
Y KYG D + +E + K+ VK Y VIS+ K+ ++ A + F E +
Sbjct: 389 AYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVISAFCKMGRMDDAMEKFSEMIDMGVPL 448
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
DT + +++ Y +G KAE + K+K +IH K W
Sbjct: 449 DTEVYMCMVEGYLNHGDSMKAEEFIT--KMKNMDIHHKPW 486
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 18/247 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEK-LDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
G+ + Y+S+L+ + E+ LD L+H + +G D +Y L ++ D +
Sbjct: 129 GITPDVITYSSLLQCFCDMKRTEEALDLLLHRV--SGDLPDAISYSVILKSFCDDGRSQC 186
Query: 67 IDKILTMM-----EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+L MM E P+V V Y V +G+ K G + KA + +Q V +
Sbjct: 187 ALDLLRMMAEKGAEHSPSV----VSYNLVIHGFFKEGEISKACHLFHGMIQQGYVPDVVT 242
Query: 122 AYNVILTLYGK---YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN ++ K K + VLR + +V+ Y ++I L L L+ ++ +
Sbjct: 243 -YNSVINALCKARAMDKAEVVLR--SMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLLK 299
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
SQ + + ++D C++G +++AE + + GR+ + + + GY
Sbjct: 300 VMRSQGVMPSLVTCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLYSIMLHGYAIEG 359
Query: 239 QIHKAVE 245
+ K ++
Sbjct: 360 SLVKMID 366
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 113/253 (44%), Gaps = 9/253 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM+ G+ YNSM+ G L EM E G+ + TY T +
Sbjct: 258 EKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQE 317
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
++++ M+ D ++ + + Y T+ +GY +G LDKA ++ + + + + +
Sbjct: 318 RRVLEAERLMCRMKRD-GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSL-A 375
Query: 122 AYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN+++ + + V + E+ + + Y ++ +L++ D++E A +I+
Sbjct: 376 TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM 435
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENL---VNHEKLKGREIHVKSWYYLATGYRQN 237
E L D I LI C G +++A L ++ LK ++ + Y GY +
Sbjct: 436 EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIY---GYCKE 492
Query: 238 SQIHKAVEAMKKV 250
++A+ +K++
Sbjct: 493 GSSYRALRLLKEM 505
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 5/223 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+ M+K + G +K ++ +MEE G++ + Y T + D E ++ M
Sbjct: 167 FGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM- 225
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYG 134
+ +V + Y + NG+ K+GL + + +K ++ G N YN ++ G
Sbjct: 226 GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKM--KLTGIVPNVYTYNSMICRCCNDG 283
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
K ++ ++ E+ ++ V Y +I L + + AE++ + L + N
Sbjct: 284 KLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYN 343
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
LID YC G L+KA +L N K G+ + ++ L G+ +
Sbjct: 344 TLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 386
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 36/227 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M+ GL+ + YN+++ Y GN +K SL ++M+ +G + TY ++ +++
Sbjct: 327 MCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 386
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + G+ ++ MEA ++ V Y + + + ++KA + E K V
Sbjct: 387 AKNSAGVTDMVREMEAR-GLSPSKVTYTILMDALVRSDNIEKAFQIYSSME---KAGLVA 442
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y +YG +I L + D++ A K+F+
Sbjct: 443 DIY-----IYGV---------------------------LIHGLCVVGDMKEASKLFKSL 470
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+ L + I N +I YC+ G +A L+ G +V S+
Sbjct: 471 DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASY 517
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 109/285 (38%), Gaps = 40/285 (14%)
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------------IKGAKVNS- 121
E NV LD + + G +VG LDK +L + EE I G N
Sbjct: 155 ETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGD 214
Query: 122 ---------------------AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRN 159
Y V++ + K G K D + ++E K V N Y +
Sbjct: 215 IERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNS 274
Query: 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+I L +A ++F+E + + + N LI C+ + +AE L+ K G
Sbjct: 275 MICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDG 334
Query: 220 REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279
++ S+ L GY + KA ++ ++ Q+ PS+ + + F + +
Sbjct: 335 LSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS-----PSLATYNILIAGFSEAKN 389
Query: 280 IGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGN 324
G + + + +G P+ + +L + N+E ++Y +
Sbjct: 390 SAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSS 434
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 134/308 (43%), Gaps = 28/308 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M++ GLA V+Y ++ + + G + + EM E G D TY T L+
Sbjct: 521 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCK 580
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKV 119
D++ T M + V D+ + T+ NGY K G ++KA+ + + + +K V
Sbjct: 581 EKMLSEADELFTEM-TERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVV 639
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW------ELYKKAVK--VLNNGYRNV--ISSLLKLDD 169
YN ++ + K + + V +W +Y + +L NGY N+ +S +L D
Sbjct: 640 --TYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 697
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
E EK FE + C N ++ YCR G KA+ +++ LKG ++
Sbjct: 698 -EMVEKGFE--ATIITC------NTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 748
Query: 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289
L G+ + + +A + K+ + P V + L+ F +G + AE +
Sbjct: 749 LINGFIKEENMDRAFALVNKMENS-----GLLPDVITYNVILNGFSRQGRMQEAELIMLK 803
Query: 290 LNDKGFIP 297
+ ++G P
Sbjct: 804 MIERGVNP 811
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 144/333 (43%), Gaps = 20/333 (6%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q++ G+ N M+ K E S + +MEE G+ D TY T ++AY
Sbjct: 347 QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC-- 404
Query: 62 SDHEGI-DKILTMMEADPNVALDWVI--YATVGNGYGKVGLLDKALAMLKKSEEQIK-GA 117
+G+ ++ +M++ L + Y + NG K G +A +L +E +K G
Sbjct: 405 --RQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL---DEMLKIGM 459
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
++A YN++L + D RI+ E+ + V + +I L K L+ A K
Sbjct: 460 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 519
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
F + ++ L D I LI +CRNG++ +A + + +G + V ++ + G
Sbjct: 520 YFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLC 579
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + +A E L T P + ++ + +G++ A E++ +
Sbjct: 580 KEKMLSEADE-----LFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNL 634
Query: 296 IPTDLQ-DKLLDNVQNGKSNLETLRELYGNSLA 327
P + + L+D G S +E + EL+ + ++
Sbjct: 635 KPDVVTYNTLIDGFCKG-SEMEKVNELWNDMIS 666
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 9/252 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
++ GL + NS+L K G + + E+ +G+ + YT ++A
Sbjct: 314 LKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQK 373
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-VNSA 122
E L+ ME + V D V Y T+ N Y + GLL++A ++ KG K
Sbjct: 374 IENTKSFLSDME-EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG--KGLKPCVFT 430
Query: 123 YNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN I L GKY + VL E+ K + Y ++ + D++ AE+IF+E
Sbjct: 431 YNAIINGLCKTGKYLRAKGVLD--EMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 488
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
SQ + D + LI + +NG L++A K G + L G+ +N
Sbjct: 489 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 548
Query: 240 IHKAVEAMKKVL 251
+ +A++ ++L
Sbjct: 549 MSEALKVRDEML 560
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 3/246 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M GL YN+++ KTG + + ++ EM + G++ D TY L
Sbjct: 416 MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCR 475
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++I M + V D V ++ + K G LD+AL + + A N
Sbjct: 476 NDNMMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA-GLAPDN 533
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ + + G + L++ E+ ++ + Y +++ L K L A+++F E
Sbjct: 534 VIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTE 593
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + D LI+ Y ++G + KA L + + V ++ L G+ + S+
Sbjct: 594 MTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSE 653
Query: 240 IHKAVE 245
+ K E
Sbjct: 654 MEKVNE 659
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/299 (19%), Positives = 122/299 (40%), Gaps = 10/299 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G V YN++L K + D L EM E G+ D YT+ T ++ Y
Sbjct: 558 EMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDG 617
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKVNS 121
+ + MM N+ D V Y T+ +G+ K ++K + +I +
Sbjct: 618 NMNKAVTLFEMM-IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHI-- 674
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+Y +++ Y G + R+W E+ +K + ++ + + A++
Sbjct: 675 SYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNM 734
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + D N LI+ + + +++A LVN + G V ++ + G+ + ++
Sbjct: 735 LLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRM 794
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+A M K++ P + + ++ + ++ A + + +GF+P D
Sbjct: 795 QEAELIMLKMIER-----GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 848
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 11/255 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M GL + +S+L G ++ L+ +M E G++ + + L + D
Sbjct: 292 MVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGD 351
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA----LAMLKKSEEQIKGAKV 119
G + ME + D V ++ +G K GL+++A L ML+K
Sbjct: 352 VVGAQSLWGEMERR-GIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGL-----IPN 405
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN-VISSLLKLDDLESAEKIFE 178
N AYN ++ + K GK ++ L++ ++ + + + N +I L K + SA +F
Sbjct: 406 NFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFM 465
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ L D N LI+ YC+ + A+NLVN G + ++ G+ +
Sbjct: 466 DMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSR 525
Query: 239 QIHKAVEAMKKVLAA 253
++++AV + ++++A
Sbjct: 526 RMNRAVLMLDELVSA 540
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 120/253 (47%), Gaps = 8/253 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++MR G+A + +N ++ +YK G E D L+ ++ G+ DR + +S A
Sbjct: 185 EEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWA 244
Query: 62 SD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE--QIKGAK 118
E ++ ++ M+E + ++ + + +V Y + GL DKA K
Sbjct: 245 GRLDEAMEFLMDMLEKGLSPSI--IAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPS 302
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S+ + L++ G+ + ++ I ++ +K + V N + ++ K D+ A+ ++
Sbjct: 303 TCSSLLMGLSINGRLQEATEL--IGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWG 360
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E E + + D + ID + GL+E+A N+ KG + ++ L G+ +
Sbjct: 361 EMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCG 420
Query: 239 QIHKAVEAMKKVL 251
++++A++ ++KV+
Sbjct: 421 KLNEALK-LEKVM 432
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 136/319 (42%), Gaps = 23/319 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G+A + YN+++ + +E+ ++ EM+ G + D+ TY L Y +
Sbjct: 261 RMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSR 320
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ ++L ME + V Y ++ + Y + GLL+ AL + K++ KG K +
Sbjct: 321 RSKEAMEVLQEMEGN-GCPPSIVTYNSLISAYARDGLLEDALEL--KNQMVEKGIKPDVF 377
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS---LLKLD----DLESAE 174
Y +L+ + K GK ++I+E ++ N G + I + L+K+
Sbjct: 378 TYTTLLSGFEKAGKDKAAVQIFE------EMRNEGCKPNICTFNALIKMHGNRGKFTEMM 431
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
K+FE+ ++ D N L+ V+ +NG+ + + K G ++ L + Y
Sbjct: 432 KVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSY 491
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ +A+ K++L A P + S A L G +E + + D
Sbjct: 492 SRCGSFDQAMAVYKRMLEA-----GVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGR 546
Query: 295 FIPTDLQ-DKLLDNVQNGK 312
P +L LL NGK
Sbjct: 547 CKPNELTYCSLLHAYANGK 565
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 7/254 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM ++G T + YN +L +Y K G + K+ L+ M+ GI D YTY T +S
Sbjct: 223 FKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCR 282
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ +E +L M+ + D V Y + + YGK +A+ +L++ E +
Sbjct: 283 RGNLYEEAAGVLKEMKL-AGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSI 341
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN +++ Y + G +D L + ++ +K +K Y ++S K ++A +IFE
Sbjct: 342 VT-YNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFE 400
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN- 237
E ++ + N LI ++ G + + K + +W L + + QN
Sbjct: 401 EMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNG 460
Query: 238 --SQIHKAVEAMKK 249
S++ + MK+
Sbjct: 461 MDSEVSGVFKEMKR 474
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 100/210 (47%), Gaps = 5/210 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M+ G + V YN++L +Y K+ ++ ++ EME NG TY + +SAYA
Sbjct: 294 LKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYAR 353
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++ M + + D Y T+ +G+ K G A+ + + E + +G K N
Sbjct: 354 DGLLEDALELKNQM-VEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFE--EMRNEGCKPN 410
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIFE 178
+N ++ ++G GK ++++++E K + N + S+ + ++S +F+
Sbjct: 411 ICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFK 470
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E + + N LI Y R G ++A
Sbjct: 471 EMKRAGFVPERDTFNTLISSYSRCGSFDQA 500
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 15/223 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M G + V YNS++ Y + G E L ++M E GI D +TY T LS +
Sbjct: 329 LQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEK 388
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + +I M PN+ + GN GK + K E IK
Sbjct: 389 AGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGN-RGKFTEMMKVF-------EDIKTF 440
Query: 118 KVNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDLESA 173
+ + +N +L+++G+ G +V +++ K+A V + + +ISS + + A
Sbjct: 441 QCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQA 500
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
+++ + D N ++ R GL +++E ++ K
Sbjct: 501 MAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMK 543
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G + YNS++ +Y ++ NFE+ + ++ E+ GI D +Y T + AY
Sbjct: 647 MKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGR 706
Query: 64 HEGIDKILT-MMEADPNVALDWVIYATVGNGYGK----VGLLDKALAMLKKSEEQIKGAK 118
++L+ M E+ P A D + Y T Y V +D M+K G K
Sbjct: 707 MRDASRVLSEMRESGP--APDIITYNTFIASYAADSMFVEAIDVVCYMIK------HGCK 758
Query: 119 VN-SAYNVILTLYGKYGKKDD 138
N S YN I+ Y K ++D+
Sbjct: 759 PNQSTYNSIVDWYCKLNRRDE 779
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 104/277 (37%), Gaps = 30/277 (10%)
Query: 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP 78
++ + K G SL+H + ++G D Y Y + ++A+ + + ME +
Sbjct: 171 IISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKME-EV 229
Query: 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDD 138
+ Y + N YGK+G+ + L + A + YN +++
Sbjct: 230 GCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLIS---------- 279
Query: 139 VLRIWELYKKAVKVLNN-----------GYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
R LY++A VL Y ++ K + A ++ +E E
Sbjct: 280 CCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPP 339
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV--- 244
N LI Y R+GLLE A L N KG + V ++ L +G+ + + AV
Sbjct: 340 SIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIF 399
Query: 245 -----EAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
E K + + L+K + + F+D
Sbjct: 400 EEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFED 436
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/278 (19%), Positives = 121/278 (43%), Gaps = 31/278 (11%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + G+ YN++L + G +++ + ++ EM++ + TYC+ L AYA+
Sbjct: 505 KRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANG 564
Query: 62 SDHEGIDKILTMME------ADPNVALDWVIYATVGNGYGKVGLL---DKALAMLKKSEE 112
+ I+++ + E +P V+ T+ K LL ++A L++
Sbjct: 565 KE---IERMCALAEEIYSGIIEPRA----VLLKTLVLVNSKCDLLMETERAFLELRQ--- 614
Query: 113 QIKGAKVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDL 170
+G + + N ++++YG+ I + K+ + Y +++ + +
Sbjct: 615 --RGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANF 672
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
E +E+I E ++ + D N +I YCRNG + A +++ + G + ++
Sbjct: 673 ERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 732
Query: 231 ATGYRQNSQIHKAVEAM--------KKVLAAYQTLVKW 260
Y +S +A++ + K + Y ++V W
Sbjct: 733 IASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDW 770
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 126/301 (41%), Gaps = 28/301 (9%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T+VY++++ + K ++ + H+M E+G + YTY + + + +
Sbjct: 675 GCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLV 734
Query: 68 DKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-Y 123
K+L+ M PN+ VIY + +G KV D+A ++ EE KG K N Y
Sbjct: 735 LKVLSKMLENSCAPNI----VIYTEMIDGLSKVAKTDEAYKLMLMMEE--KGCKPNVVTY 788
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE--- 179
++ +GK GK D L ++ E+ K Y +I+ L+ A + EE
Sbjct: 789 TAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQ 848
Query: 180 --WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
W Y I + + GLLE+ E G + + L + +
Sbjct: 849 TYWPKHVSSYCKVIEGYKREFILSLGLLEEVEK-------NGSAPIILLYKVLIDNFVKA 901
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA-ENFIELLNDKGFI 296
++ A+E K+V++A ++ K SL Y IG A E F +++ D G I
Sbjct: 902 GRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSY---ASKIGHAFELFYDMIRD-GVI 957
Query: 297 P 297
P
Sbjct: 958 P 958
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 137/348 (39%), Gaps = 51/348 (14%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
T++YN M+ + FE+ ++ M + TY L + +IL+
Sbjct: 308 TILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILS 367
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-------------------- 112
MM A+ + I+ ++ + Y K A +LKK E+
Sbjct: 368 MMIAE-GCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSG 426
Query: 113 -QIKGAKV----NSAYNVILTLYGKYGKKDDVLRIWEL------YKKAVKVLN----NG- 156
++ G AYN +L+ G K +V+ ++KA KV++ NG
Sbjct: 427 GELPGPVTFELAEKAYNEMLSA-GTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGF 485
Query: 157 ------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
Y VI L +E+A +F+E + + D LID + + G++++A N
Sbjct: 486 VPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHN 545
Query: 211 LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270
++ G E V ++ L Y + ++ A E + ++A P+V + A
Sbjct: 546 WLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAK-----GCFPNVITYTAL 600
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIP-TDLQDKLLDNVQNGKSNLET 317
+D + G+I A + IP D+ K+ +NV K N+ T
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAE-KPNVVT 647
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 19/184 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
KM + G Y+S++ +K + + ++ +M EN + Y + +
Sbjct: 703 FHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + K++ MME PNV V Y + +G+GK G +DK L + + E KG
Sbjct: 763 VAKTDEAYKLMLMMEEKGCKPNV----VTYTAMIDGFGKAGKVDKCLELFR--EMGSKGC 816
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIWELYKKA---------VKVLNNGYRNVISSLLKL 167
N Y V++ G D+ + E K+ KV+ R I SL L
Sbjct: 817 APNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLL 876
Query: 168 DDLE 171
+++E
Sbjct: 877 EEVE 880
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 60/333 (18%), Positives = 127/333 (38%), Gaps = 69/333 (20%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ G+ Y ++ + K G ++ + + EM +G TY T + AY
Sbjct: 512 FKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLK 571
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A +++ +M A PNV + Y + +GY K G ++KA + + ++G
Sbjct: 572 AKKVSVANELFELMIAKGCFPNV----ITYTALIDGYCKSGNIEKACQIYAR----MRGD 623
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
++ + +K +V+ Y ++ L K ++ A +
Sbjct: 624 ADIPDVDMYFKIKNNVAEKPNVVT---------------YGALVDGLCKAHKVKDARDLL 668
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E +T + + LID +C+ L++A+ + + G +V ++ L ++
Sbjct: 669 ETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKD 728
Query: 238 SQIHKAVEAMKKVL-------------------------AAYQTLVK-----WKPSVESL 267
++ ++ + K+L AY+ ++ KP+V +
Sbjct: 729 KRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTY 788
Query: 268 AA-------------CLDYFKDEGDIGGAENFI 287
A CL+ F++ G G A NF+
Sbjct: 789 TAMIDGFGKAGKVDKCLELFREMGSKGCAPNFV 821
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 70/341 (20%), Positives = 132/341 (38%), Gaps = 54/341 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +++D G T + YN++++++ + + + EM E G++ D +T L +A
Sbjct: 229 LGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFT----LGFFAQ 284
Query: 61 ASDHEGI-DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK---------- 109
A G + L+++E + V + ++Y + +G + ++A+ L +
Sbjct: 285 ALCKVGKWREALSLIEKEDFVP-NTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNV 343
Query: 110 -----------SEEQIKGAK----------VNSAYNVILTLYGKYGKKDDVLRIWELYKK 148
+++Q+ K +Y + +L Y K DD ++L KK
Sbjct: 344 QTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKK 403
Query: 149 AVKV-LNNG---YRNVISSLLKLDDL------ESAEKIFEEWESQALCYDTRIPNFLIDV 198
K G Y +I S+ +L E AEK + E S +
Sbjct: 404 MEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARC 463
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN-SQIHKAVEAMKKVLAAYQTL 257
C G EKA ++ HE + + S Y G+ N S++ A K++
Sbjct: 464 LCGFGKFEKAYKVI-HEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVV- 521
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
P V + +D F G I A N+++ + G PT
Sbjct: 522 ----PDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPT 558
>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 678
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 109/224 (48%), Gaps = 11/224 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ G+ V +N+++ + K G +K L+ + ENG+ D +T+ + +
Sbjct: 452 FRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQ 511
Query: 61 AS-DHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
E ++ M+E +PN VIY + +G + +++ +L++ +++ G
Sbjct: 512 IKRTEEALECFTEMIEWGINPNA----VIYNILIRSLCTIGDVARSVKLLRRMQKE--GI 565
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
++ +YN ++ ++ + K + ++++ + + + N Y I +L + LE A+K
Sbjct: 566 SPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKK 625
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+F E+ D+ I N +I + + +E+A+N++ + KG
Sbjct: 626 MFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKG 669
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 100/218 (45%), Gaps = 5/218 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+R G+ Y +++++ YK E+ D + ++ +G+ + ++Y ++ + A
Sbjct: 385 LRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKL 444
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ + M+ V + V + T+ NG+ K G +DKA +L+ E G K +
Sbjct: 445 MDNASEAFRDMQVR-GVVPNLVTFNTLINGHCKDGAIDKARKLLESLLEN--GLKPDIFT 501
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
++ I+ + + ++ L + E+ + + Y +I SL + D+ + K+ +
Sbjct: 502 FSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQ 561
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ + DT N LI ++CR +EKA+ L + G
Sbjct: 562 KEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSG 599
>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 806
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 128/306 (41%), Gaps = 12/306 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G+ ++ N+ + ++ + EK + M+ GI + TY + Y D
Sbjct: 268 MQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHR 327
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
E ++L M + + D V Y T+ K + + ++KK ++ Y
Sbjct: 328 VEEAIELLEDMHSKGCLP-DKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTY 386
Query: 124 NVILTLYGKYGKKDDVLRIWEL---YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
N ++ + K+ D+ L W L +K ++ GY ++ +L K + A+ + E
Sbjct: 387 NTLIHMLTKHDHADEAL--WFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEM 444
Query: 181 ESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S+ C D +++ +CR G ++KA+ L+ G + + S+ L G + +
Sbjct: 445 LSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGK 504
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+A E M + W P+ + + + + EG + A + + + KGF P
Sbjct: 505 SLEAREMMNMSEEHW-----WSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGP 559
Query: 300 LQDKLL 305
++ LL
Sbjct: 560 VEINLL 565
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 125/303 (41%), Gaps = 10/303 (3%)
Query: 1 MQKM-RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
M+KM ++ GL V YN+++ + K + ++ + + +E G D+ Y + A
Sbjct: 370 MKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALC 429
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ M + + D V Y V NG+ ++G +DKA +L+ G K
Sbjct: 430 KEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTH--GHKP 487
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIF 177
N+ +Y +L + GK + + + ++ N+ Y ++ L + L A +
Sbjct: 488 NTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVV 547
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + N L+ CR+G +A + KG I+V ++ + G+ QN
Sbjct: 548 REMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQN 607
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ A+ + + L+ V + +D +G I A ++ + KG P
Sbjct: 608 DELDAALSVLDDMY-----LINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDP 662
Query: 298 TDL 300
T +
Sbjct: 663 TPV 665
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 113/253 (44%), Gaps = 9/253 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM+ G+ YNSM+ G L EM E G+ + TY T +
Sbjct: 245 EKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQE 304
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
++++ M+ D ++ + + Y T+ +GY +G LDKA ++ + + + + +
Sbjct: 305 RRVLEAERLMCRMKRD-GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSL-A 362
Query: 122 AYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN+++ + + V + E+ + + Y ++ +L++ D++E A +I+
Sbjct: 363 TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM 422
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENL---VNHEKLKGREIHVKSWYYLATGYRQN 237
E L D I LI C G +++A L ++ LK ++ + Y GY +
Sbjct: 423 EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIY---GYCKE 479
Query: 238 SQIHKAVEAMKKV 250
++A+ +K++
Sbjct: 480 GSSYRALRLLKEM 492
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 5/223 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+ M+K + G +K ++ +MEE G++ + Y T + D E ++ M
Sbjct: 154 FGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM- 212
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYG 134
+ +V + Y + NG+ K+GL + + +K ++ G N YN ++ G
Sbjct: 213 GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKM--KLTGIVPNVYTYNSMICRCCNDG 270
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
K ++ ++ E+ ++ V Y +I L + + AE++ + L + N
Sbjct: 271 KLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYN 330
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
LID YC G L+KA +L N K G+ + ++ L G+ +
Sbjct: 331 TLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 373
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 36/227 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M +M+ GL+ + YN+++ Y GN +K SL ++M+ +G + TY ++ +++
Sbjct: 314 MCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 373
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A + G+ ++ MEA ++ V Y + + + ++KA + E K V
Sbjct: 374 AKNSAGVTDMVREMEAR-GLSPSKVTYTILMDALVRSDNIEKAFQIYSSME---KAGLVA 429
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y +YG +I L + D++ A K+F+
Sbjct: 430 DIY-----IYGV---------------------------LIHGLCVVGDMKEASKLFKSL 457
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+ L + I N +I YC+ G +A L+ G +V S+
Sbjct: 458 DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASY 504
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 109/285 (38%), Gaps = 40/285 (14%)
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------------IKGAKVNS- 121
E NV LD + + G +VG LDK +L + EE I G N
Sbjct: 142 ETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGD 201
Query: 122 ---------------------AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRN 159
Y V++ + K G K D + ++E K V N Y +
Sbjct: 202 IERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNS 261
Query: 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+I L +A ++F+E + + + N LI C+ + +AE L+ K G
Sbjct: 262 MICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDG 321
Query: 220 REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279
++ S+ L GY + KA ++ ++ Q+ PS+ + + F + +
Sbjct: 322 LSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS-----PSLATYNILIAGFSEAKN 376
Query: 280 IGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGN 324
G + + + +G P+ + +L + N+E ++Y +
Sbjct: 377 SAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSS 421
>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 44/245 (17%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE-NGITYDRYTYCTRLSAYADA 61
+M + G+ TT +Y ++L Y + ++ S++++M+ D YTY T L A DA
Sbjct: 112 EMVEEGIEPTTELYTALLAAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDA 171
Query: 62 SDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
S E ID + M+ PN V V +GYG+VG+ D+ +L + E
Sbjct: 172 SRFELIDTLYQEMDERLISPNT----VTQNVVLSGYGRVGMYDQMERVLSEMLESAACKP 227
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-------------------------LYKKAVKVL 153
N+IL+++G G+ D + R +E +Y K V+
Sbjct: 228 DVWTMNIILSVFGNEGQIDLMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVM 287
Query: 154 -----------NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
+ Y NVI + + D ++ E F++ ++++ DT+ LI+ Y
Sbjct: 288 EYMRKVQFPWTTSTYNNVIEAFADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANA 347
Query: 203 GLLEK 207
GL K
Sbjct: 348 GLFHK 352
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 36/206 (17%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+K R+ G+ T +N ++ Y K ++K+ S+M M + + TY + A+AD
Sbjct: 253 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNNVIEAFADV 312
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D + ++ M A+ ++ D + + NGY GL K ++ ++
Sbjct: 313 GDAKNMEYAFDQMRAE-SMKADTKTFCCLINGYANAGLFHKVISSVQ------------- 358
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
L K+ ++ + + VIS+ K DDL E++F+ +
Sbjct: 359 -------LAAKFEIPEN---------------TSFFNAVISACAKADDLMEMERVFKRMK 396
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEK 207
+ D+R + +++ Y + G+ +K
Sbjct: 397 DKQCPPDSRTYSIMVEAYRKEGMNDK 422
>gi|357469235|ref|XP_003604902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505957|gb|AES87099.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 449
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 12/217 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM D + TV+YN ++KL K G+ E + LM +M NGI D TY T +
Sbjct: 128 LRKMEDFEMKPDTVMYNVVIKLVCKQGDVEMGEKLMKDMSLNGICPDLITYMTMIEGLCS 187
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +++ +M + + + V+ + V +G ++ +++AL +L + E+
Sbjct: 188 AGRLEEAYEMVKVMRGN-GCSPNSVVLSAVLDGLCRLDSMERALELLDEMEKSGDCCPNV 246
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEK---- 175
Y ++ + K G+ + L I + + N+ +I SL ++ A K
Sbjct: 247 VTYTSLIQSFCKRGEWTEALNILDRMRAFGCFANHVTVFTLIESLCTEGRVDEAYKVVDK 306
Query: 176 -IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ E S+ CY++ + +F+ R LE AENL
Sbjct: 307 LVVEHCVSRGDCYNSLVISFI-----RVKKLEGAENL 338
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 9/242 (3%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
+GL+ YN ++K+ + F+K L++ M E G + D ++Y T +++ A
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSD 202
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN---SAY 123
K+ M + V D Y + +G+ K G + A + E +KG V +Y
Sbjct: 203 ALKLFDEM-PERGVTPDVACYNILIDGFFKKGDILNASEIW---ERLLKGPSVYPNIPSY 258
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWES 182
NV++ K GK D+ IW KK + + Y +I L +L+ A ++++E
Sbjct: 259 NVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAE 318
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D + N +++ Y R G +E+ L + +G V S+ L G +N+++ +
Sbjct: 319 NGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDE 377
Query: 243 AV 244
A+
Sbjct: 378 AI 379
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 117/248 (47%), Gaps = 12/248 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGI-TYDRYTYCTRLSAYAD 60
++M + G++ VVYN+ML Y + G E+ L ME+ G T Y R + +
Sbjct: 314 KEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR-GLFEN 372
Query: 61 ASDHEGIDKILTMMEADP--NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A +D+ +++ E P + D + Y + +G K G L+KAL++L+++E +G
Sbjct: 373 AK----VDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENG-RGDL 427
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
AY+ ++ + G+ D+V + ++ K K + VI+ ++ LE A + F
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFF 487
Query: 178 EEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
S+ C+ T + N LI+ + +A LV KG + ++ ++ L G Q
Sbjct: 488 GNMVSKG-CFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQ 546
Query: 237 NSQIHKAV 244
++ A+
Sbjct: 547 GKKLDMAL 554
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/354 (18%), Positives = 129/354 (36%), Gaps = 42/354 (11%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + G + Y +++ K G L EM E G+T D Y + + D
Sbjct: 175 MWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD 234
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-- 121
+I + P+V + Y + NG K G D++ + + ++ +G + +
Sbjct: 235 ILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYS 294
Query: 122 --------------------------------AYNVILTLYGKYGKKDDVLRIWELYKKA 149
YN +L Y + G+ ++ L +W++ +K
Sbjct: 295 TLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKE 354
Query: 150 VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
Y +I L + ++ A I+E + C D+ L+ C+NG L KA
Sbjct: 355 GCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 414
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA 269
+++ + ++ ++ + G + ++ + + ++ T KP+ A
Sbjct: 415 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQM-----TKHGCKPNPHVCNA 469
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYG 323
++ F + A F + KG PT + + + NG S E E Y
Sbjct: 470 VINGFVRASKLEDALRFFGNMVSKGCFPTVVT---YNTLINGLSKAERFSEAYA 520
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 20/231 (8%)
Query: 75 EADPNVALDWVIYATVGNGYGKVG---------LLD-KALAMLKKSEEQIKGAKVNSAYN 124
E +P+ AL T GY L D K +A + + E I+ K +
Sbjct: 20 EKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPED 79
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NGYRNVISSLLKLDDLESAEKIFEE 179
V LT+ Y K + +++++ ++ Y +++++L++ + + AE F
Sbjct: 80 VALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLY 139
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+E+ L + + N LI + CR +KA+ L+N +G V S+ L +N
Sbjct: 140 FETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGY 199
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ A++ ++ T P V +D F +GDI A E L
Sbjct: 200 MSDALKLFDEMPERGVT-----PDVACYNILIDGFFKKGDILNASEIWERL 245
>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
Length = 607
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 127/278 (45%), Gaps = 17/278 (6%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q ++D GL +NS+L + G+ E ++ EM GI D YTY T + A
Sbjct: 42 QMLKD-GLCPDRKTFNSLLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKC 100
Query: 62 SDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKGA 117
+ E ++L MEA PNV V Y+T+ +GY K+ ++AL + +K + +I+
Sbjct: 101 GNMELAMQVLLDMEAKGVKPNV----VTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLD 156
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+V YN +L +Y K GK ++ + E+ + ++ Y ++I+ K L+ +
Sbjct: 157 RV--CYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSIL 214
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
++ + + + LID+Y + G+ A N+ K G + V + +
Sbjct: 215 VQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAK 274
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF 274
N I A+ + + T + KP+V + A +D F
Sbjct: 275 NGLIEWALSLLNDM-----TEMGIKPNVVTYNAIIDAF 307
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M +LG+ + TV YNS++ Y K G + + L+ +M + G+ TY T + Y+ A
Sbjct: 182 EMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAG 241
Query: 63 DH-EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
H + + L E+ + D V++++ + K GL++ AL++L E G K N
Sbjct: 242 MHGDAFNVYLDFKES--GLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEM--GIKPNV 297
Query: 122 A-YNVILTLYGK 132
YN I+ +GK
Sbjct: 298 VTYNAIIDAFGK 309
>gi|218192883|gb|EEC75310.1| hypothetical protein OsI_11678 [Oryza sativa Indica Group]
Length = 473
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 117/238 (49%), Gaps = 13/238 (5%)
Query: 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
++A++ A++ + + L +M A +V D VIY + +G + +AL + +E ++
Sbjct: 227 VAAFSAAANFGKVSETLHLMIAAGSVP-DTVIYQRIIHGLFAHKMGSEALRVF--NEIKL 283
Query: 115 KGAKVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLES 172
+G V++ Y + K G D+ +IW E+ K ++ Y ++++ K D E
Sbjct: 284 RGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEM 343
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A K+++E + L T N L+ +C +G +++A + KG E V ++ L
Sbjct: 344 ARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQ 403
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
G + ++ +A++ +++L++ +PSV + +D +EG + A +ELL
Sbjct: 404 GLCKAGRLSEAIQVYEQLLSS-----GLEPSVSTFTPLIDTMCEEGQVDAA---VELL 453
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 38/201 (18%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y + + K G ++ + +EM + G+ + Y YC+ ++ Y A D E K+
Sbjct: 290 AVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYD 349
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M +G G LK+S + N+++T +
Sbjct: 350 EM---------------LGKG-------------LKES---------TVSCNILVTGFCT 372
Query: 133 YGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI 191
+G+ D+ L ++ E+ KK ++ Y +I L K L A +++E+ S L
Sbjct: 373 HGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVST 432
Query: 192 PNFLIDVYCRNGLLEKAENLV 212
LID C G ++ A L+
Sbjct: 433 FTPLIDTMCEEGQVDAAVELL 453
>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
Length = 814
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 129/306 (42%), Gaps = 12/306 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G+ ++ N+ + ++ + EK + M+ GI + TY + Y D
Sbjct: 271 MQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHR 330
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
E ++L M + + D V Y T+ K + + ++KK ++ + Y
Sbjct: 331 VEEAIELLDDMPSKGCLP-DKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTY 389
Query: 124 NVILTLYGKYGKKDDVLRIWELY---KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
N ++ + K+ D+ L W L +K ++ GY ++ +L K + A+ + E
Sbjct: 390 NTLIHMLTKHDHADEAL--WFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEM 447
Query: 181 ESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S+ C D +++ +CR G ++KA+ L+ G + + S+ L G + +
Sbjct: 448 LSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGK 507
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+A E M + W P+ + + + + EG + A + + + KGF P
Sbjct: 508 SLEAREMMNMSEEQW-----WSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGP 562
Query: 300 LQDKLL 305
++ LL
Sbjct: 563 VEINLL 568
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 126/303 (41%), Gaps = 10/303 (3%)
Query: 1 MQKM-RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
M+KM ++ GL R V YN+++ + K + ++ + + EE G D+ Y + A
Sbjct: 373 MKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALC 432
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ M + + D V Y V NG+ ++G +DKA +L+ G K
Sbjct: 433 KEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTH--GYKP 490
Query: 120 NS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIF 177
N+ +Y +L + GK + + + ++ N+ Y ++ L K L A +
Sbjct: 491 NTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVV 550
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E + N L+ CR+G +A + KG I+V ++ + G+ QN
Sbjct: 551 REMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQN 610
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ A+ + + L+ V + +D +G I A ++ + KG P
Sbjct: 611 DELDAALSVLDDMY-----LINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDP 665
Query: 298 TDL 300
T +
Sbjct: 666 TPV 668
>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
protein-like proteins; contains similarity to Pfam
family PF01535 (Domain of unknown function),
score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++K+++ G + + YN ++ L+ N EK+ ++ +ME+ G D TY T +S +
Sbjct: 534 VEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGK 593
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
D E +++++ M DP V Y V + Y VG LD+AL + K K
Sbjct: 594 HKDFESVERMMEQMREDGLDPTVT----TYGAVIDAYCSVGELDEALKLFKDMGLHSKVN 649
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRI------------WELYKKAVKVLNNGYRNVISSLL 165
YN+++ + K G L + E Y K LN + +LL
Sbjct: 650 PNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQG--ETLL 707
Query: 166 KLDDLESAEKIFEEWESQ 183
KL D E E + + SQ
Sbjct: 708 KLMD-EMVEHLVNQIRSQ 724
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
++ YN+++ + K +FE ++ +M +M E+G+ TY + AY + + K+
Sbjct: 581 SITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFK 640
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
M V + VIY + N + K+G +AL++ K E ++K + N YN +
Sbjct: 641 DMGLHSKVNPNTVIYNILINAFSKLGNFGQALSL--KEEMKMKMVRPNVETYNALFKCLN 698
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYR 158
+ + + +L++ E+ + V + + +R
Sbjct: 699 EKTQGETLLKLMDEMVEHLVNQIRSQWR 726
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 53/338 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ G + + + YN+++ Y K G K D+L+ EM I + T+ + +
Sbjct: 252 VEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR 311
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALA------------ 105
+ K+ M+ PNV V Y ++ NG G LD+AL
Sbjct: 312 DENVTAAKKVFEEMQRQGLQPNV----VTYNSLINGLCSNGKLDEALGLQDKMSGMGLKP 367
Query: 106 ----------------MLKKSEEQI-----KGAKVNS-AYNVILTLYGKYGKKDDVLRIW 143
MLK++ E + +G N +N ++ YGK G+ DD +
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427
Query: 144 ELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
+ N + Y +I + +++ A K+ +E E L D N L+D C+
Sbjct: 428 SMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK- 261
G KA L++ G ++ L GY + A+ +TL++ K
Sbjct: 488 GETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNV--------RTLMEKKG 539
Query: 262 --PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ + + F ++G + A + + +KG IP
Sbjct: 540 RRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIP 577
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 17/224 (7%)
Query: 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK--KD 137
+ ++ V + V NG KVG KA +++ + V + YN I+ Y K GK K
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVIT-YNTIIDGYCKAGKMFKA 283
Query: 138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197
D L + E+ K + + +I + +++ +A+K+FEE + Q L + N LI+
Sbjct: 284 DAL-LKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLIN 342
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM----KKVLAA 253
C NG L++A L + G + +V ++ L G+ + + +A E + K+ LA
Sbjct: 343 GLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLA- 401
Query: 254 YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P+V + +D + G + A ++ D G P
Sbjct: 402 --------PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437
>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Brachypodium distachyon]
Length = 410
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 129/313 (41%), Gaps = 14/313 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KMR G+ YN ++ + +TG FE+ L EM GIT + +Y T ++
Sbjct: 96 FEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCR 155
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L +M + + V + + +GYGK G + AL Q++ A
Sbjct: 156 YRKMKDATQLLELMRRE-GIRPSVVTFNLLVDGYGKAGKMSNALHF----SNQMRMAGYQ 210
Query: 121 SAYNVILTLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ L + + D++R ++ ++ + Y +I + + +D++ A ++
Sbjct: 211 PSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEM 270
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E L D R L+ C G ++ A L KG ++ + L GY +
Sbjct: 271 FAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGR 330
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+K AMK ++ + + P+ S + ++G AE I+ + G
Sbjct: 331 EGSSYK---AMKLIMEMRKK--GFVPNSASYGLTIRILCNDGKCSEAEALIDDMVRAGVQ 385
Query: 297 PTDLQDKLLDNVQ 309
++ ++L N +
Sbjct: 386 TSESVRQVLLNAK 398
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 104/222 (46%), Gaps = 7/222 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +++ +G + VYN+++ K G F++ + L EM E G+ + TY + ++
Sbjct: 354 VNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCR 413
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KGAKV 119
+ L M + + Y ++ NG+ K+G L A++ +E I KG K
Sbjct: 414 RGKLDTAIHFLGKMIM-AGIKITVYPYNSLINGHCKLGNLSAAVSFF---DEMIDKGLKP 469
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+Y +++ Y GK + R++ E+ K + + +IS+L + + + A ++F
Sbjct: 470 TVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLF 529
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+E Q + + N +I+ +C+ G KA L+N KG
Sbjct: 530 DEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKG 571
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 122/298 (40%), Gaps = 22/298 (7%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEE---NGITYDRYTY--CTRLSAYADA 61
+G+ +Y ++++ + + NF K ++ ME N + Y+ + C +
Sbjct: 222 MGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAV 281
Query: 62 SDHEG-IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
G I K LT E V Y T+ G KV + ++ + E +
Sbjct: 282 EIKNGLIQKGLTASE---------VTYCTLVLGLCKVQEFEVGAGVMDEMIE-LGFVPTE 331
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
+A + ++ + GK D + KK + + Y +I+SL K + AE +F+E
Sbjct: 332 AALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKE 391
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ LC + + LID +CR G L+ A + + + G +I V + L G+ +
Sbjct: 392 MGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGN 451
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ AV +++ KP+V S + + + ++G + A + KG P
Sbjct: 452 LSAAVSFFDEMIDK-----GLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAP 504
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 12/216 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M D L V+Y SM+ Y K G+ +K + M + G T + TY T ++
Sbjct: 669 LKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCK 728
Query: 61 AS---DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A E + K + + + PN V Y + + G ++KA+ + + +KG
Sbjct: 729 AGLMDKAELLWKEMLVSNSTPN----HVTYCCFLDHLAREGSMEKAVQL---HNDMLKGL 781
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N+ +YN+++ + K G+ ++ ++ E+ A+ Y +I + +L+ A +
Sbjct: 782 LANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIE 841
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
++ ++ L DT NFLI C G L KA L
Sbjct: 842 FWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFEL 877
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 139/329 (42%), Gaps = 56/329 (17%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V YN M++ + K GN K L+++M + G+ D YTY +S+ K +
Sbjct: 542 VTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDD 601
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ----------------IKGA 117
+ + + L+ + Y+ + +GY K G L AL + ++ ++ IK
Sbjct: 602 LHRE-HFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQ 660
Query: 118 KVNSAYNVILTLYGKYGKKDDVL--RIWELYKKAVKV----------LNNG-------YR 158
++ + ++ ++ + + D V+ + + Y KA V ++ G Y
Sbjct: 661 DTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYT 720
Query: 159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL-----IDVYCRNGLLEKAENLVN 213
+I+ L K ++ AE +++E + PN + +D R G +EKA L N
Sbjct: 721 TLINELCKAGLMDKAELLWKE-----MLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHN 775
Query: 214 HEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL--AAYQTLVKWKPSVESLAACL 271
+ LKG + S+ L G+ + ++ +A + + +++ A + + + +
Sbjct: 776 -DMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCR-- 832
Query: 272 DYFKDEGDIGGAENFIELLNDKGFIPTDL 300
G++ GA F + + +KG P L
Sbjct: 833 -----RGNLDGAIEFWDTMLNKGLKPDTL 856
>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 42/215 (19%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T YN +L + +G E+ ++ M + I D ++Y T LSAY +
Sbjct: 337 FEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVN 396
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
ASD EG +K ++ D PN+ V Y T+ GY K ++K + + +K ++ G
Sbjct: 397 ASDMEGAEKFFKRIKVDGFEPNI----VTYGTMIKGYAKANDVEKMMEVYEKM--RLSGI 450
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
K N ILT ++ + + D SA +
Sbjct: 451 KAN---QTILT------------------------------TIMDASGRCKDFGSALGWY 477
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
+E ES + D + N L+ +Y L++A+ L
Sbjct: 478 KEMESCGVPPDQKAKNVLLSLYSTQDELDEAKELT 512
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 97/214 (45%), Gaps = 22/214 (10%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+Y+ M+ +Y K GN++K + M G+ TY + +S ++++ + KI M
Sbjct: 249 MYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSF---ETNYKEVSKIYDQM 305
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA--KVNSAYNVILTLYGK 132
+ + D V YA + YG+ ++AL++ EE + + AYN++L +
Sbjct: 306 QRS-GIQPDVVSYALLIKAYGRARREEEALSVF---EEMLDAGVRPTHKAYNILLDAFAI 361
Query: 133 YGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEE-----WESQAL 185
G + +++ ++ ++ + Y ++S+ + D+E AEK F+ +E +
Sbjct: 362 SGMVEQAKTVFKSMRRD-RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 420
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
Y T +I Y + +EK + +L G
Sbjct: 421 TYGT-----MIKGYAKANDVEKMMEVYEKMRLSG 449
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 7/254 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM + G T + YN +L +Y K G + K+ L+H M+ +G+ D YTY T +S
Sbjct: 240 FKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCR 299
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S +E ++ M+ + D V + T+ + YGK +A+ +LK+ E +
Sbjct: 300 RGSLYEEAAQVFEEMKLS-GFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSI 358
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN +++ Y + G + + + ++ +K +K Y ++S K E A +IF
Sbjct: 359 VT-YNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFG 417
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN- 237
E + + N LI ++ G + + ++ + +W L + QN
Sbjct: 418 EMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNG 477
Query: 238 --SQIHKAVEAMKK 249
S++ + MK+
Sbjct: 478 MDSEVSGVFKEMKR 491
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 130/331 (39%), Gaps = 38/331 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G + + V YNS++ Y + G + L +M E GI D +TY T LS +
Sbjct: 346 LKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEK 405
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A E +I M A PN+ + GN G+ + K + E A
Sbjct: 406 AGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGN-RGRFAEMMKVFEEI----EICNCA 460
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDLESAEKI 176
+N +L ++G+ G +V +++ K+A V + + +IS+ + + A +
Sbjct: 461 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAV 520
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK---LKGREIHVKSWYYLATG 233
++ + D N ++ R GL E++E + K K E+ S +
Sbjct: 521 YKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYAN 580
Query: 234 YRQNSQIHKAVEAM-----KKVLAAYQTLV---------------------KWKPSVESL 267
++ ++H E + + V +TLV K P + +L
Sbjct: 581 SKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTL 640
Query: 268 AACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
A + + + A + +N+ GF P+
Sbjct: 641 NAMIAIYGRRQMVAKANEILNFMNESGFSPS 671
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 5/252 (1%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ G+A YN+++ + +E+ + EM+ +G + D+ T+ T L Y +
Sbjct: 279 MKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRR 338
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-A 122
+ ++L ME + V Y ++ + Y + GLL +A+ + + E KG K +
Sbjct: 339 PKEAMEVLKEMEFS-GFSPSIVTYNSLISAYARDGLLREAMELKDQMVE--KGIKPDVFT 395
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y +L+ + K G + +RI+ E+ K + +I K+FEE E
Sbjct: 396 YTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIE 455
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
D N L+ V+ +NG+ + + K G ++ L + Y +
Sbjct: 456 ICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQ 515
Query: 242 KAVEAMKKVLAA 253
+A+ K++L A
Sbjct: 516 QAMAVYKRMLEA 527
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++M+ G + V +N++L +Y K+ ++ ++ EME +G + TY + +SAYA
Sbjct: 311 FEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYAR 370
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
D E ++ M+E + D Y T+ +G+ K G+ + A+ + E + G K
Sbjct: 371 DGLLREAMELKDQMVEK--GIKPDVFTYTTLLSGFEKAGMDEPAMRIF--GEMRAAGCKP 426
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIF 177
N +N ++ ++G G+ ++++++E + + N + ++ + ++S +F
Sbjct: 427 NICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVF 486
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+E + + N LI Y R G ++A
Sbjct: 487 KEMKRAGFVPERDTFNTLISAYSRCGSFQQA 517
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M + G+ YN++L + G +E+ + + EM++ + TYC+ L AYA++
Sbjct: 522 KRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANS 581
Query: 62 SD----HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL---DKALAMLKKSEEQI 114
+ H ++I + + V L ++ K LL + A LKK
Sbjct: 582 KEIERMHTLAEEIYSGLTEPVPVLLKTLVLVN-----SKCDLLMETEHAFEELKK----- 631
Query: 115 KGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN----NGYRNVISSLLKL--- 167
KG+ S N ++ +YG+ ++ KA ++LN +G+ +++ L
Sbjct: 632 KGSPDLSTLNAMIAIYGRR----------QMVAKANEILNFMNESGFSPSLATYNSLMYM 681
Query: 168 ----DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
++ E +E++ +E ++ L D N +I YCRNG ++ A + ++ K G
Sbjct: 682 HSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPD 741
Query: 224 VKSWYYLATGYRQNSQIHKAVEAMKKVL 251
V ++ Y +S A+ ++ ++
Sbjct: 742 VITYNTFVASYAADSLFEDAIGVVRYMI 769
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M + G + + YNS++ ++ ++ NFE+ + ++ E+ G+ D +Y T + AY
Sbjct: 663 MNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGR 722
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ +I + M+ + D + Y T Y L + A+ +++ + G K N +
Sbjct: 723 MKDASRIFSYMKTY-GLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKH--GCKRNQNT 779
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN I+ Y K+ ++ D + V LN + + K ++L +E+I ++W
Sbjct: 780 YNSIVDGYCKHSRRADAIMF-------VSSLN----QLDPHVTKEEELRLSERIAKKW 826
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 13/258 (5%)
Query: 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW 84
K G S+++ + ++G D Y Y + ++AYA + + ME +
Sbjct: 194 KEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEE-GCKPTL 252
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144
+ Y + N YGK+G+ ++ L + A + YN +++ + ++ +++E
Sbjct: 253 ITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFE 312
Query: 145 LYK----KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
K KV N +V K + A ++ +E E N LI Y
Sbjct: 313 EMKLSGFSPDKVTFNTLLDVYG---KSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYA 369
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260
R+GLL +A L + KG + V ++ L +G+ + A+ ++ AA
Sbjct: 370 RDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAA-----GC 424
Query: 261 KPSVESLAACLDYFKDEG 278
KP++ + A + + G
Sbjct: 425 KPNICTFNALIKMHGNRG 442
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 139/346 (40%), Gaps = 28/346 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M D G+ YN M+ + G + L EM + D T L+ D
Sbjct: 251 LSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVT----LTILVD 306
Query: 61 ASDHEG-------IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
EG + + +T +PN++ Y + +GY L+++A + + Q
Sbjct: 307 GLCKEGMVSEARLVFETMTEKGVEPNIS----TYNALMDGYCLQRLMNEAKKVFEIMIRQ 362
Query: 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLES 172
V+S YN+++ + K + D+ + E+Y KA+ Y ++ L + +
Sbjct: 363 GCAPGVHS-YNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKE 421
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A IF+E S L + + L+D +C++G L++A L+ + K E ++ L
Sbjct: 422 ALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIE 481
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
G ++ A E K+ A +P++ + + EG A + + D
Sbjct: 482 GMFIAGKLEVAKELFSKLFAD-----GIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMED 536
Query: 293 KGFIPTD-----LQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
GF+P + L N Q+ + + + E+ G + N T
Sbjct: 537 DGFLPNSCSYNVMIQGFLQN-QDSSTAIRLIDEMVGKRFSANLSTF 581
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 136/320 (42%), Gaps = 16/320 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRL-SAYADASDHEGIDKIL 71
+ YN+++ KTGN + +ME+NG D TY T + S D ++ ++ +
Sbjct: 193 VISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLS 252
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILT 128
M+ D + + Y + +G+ +G L++A + K ++ G V +++
Sbjct: 253 EML--DRGIPPNVFTYNCMVHGFCILGQLNEATRLFK----EMVGRDVMPDTVTLTILVD 306
Query: 129 LYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
K G + ++E + +K V+ + Y ++ + A+K+FE Q
Sbjct: 307 GLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAP 366
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
N LI+ +C++ +++A++L+ K ++ L G Q + +A+
Sbjct: 367 GVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIF 426
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDN 307
K+ + +Y L P++ + + LD F G + A ++ + +K P + +L
Sbjct: 427 KE-MCSYGLL----PNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIE 481
Query: 308 VQNGKSNLETLRELYGNSLA 327
LE +EL+ A
Sbjct: 482 GMFIAGKLEVAKELFSKLFA 501
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 6/178 (3%)
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S +N ++ GK + + ++ E+ ++ + Y +I+ L K + A +F++
Sbjct: 159 STFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKK 218
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E D N +ID C++ L+ A ++ +G +V ++ + G+ Q
Sbjct: 219 MEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQ 278
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+++A K+++ P +L +D EG + A E + +KG P
Sbjct: 279 LNEATRLFKEMVGR-----DVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEP 331
>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Glycine max]
Length = 626
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 15/219 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M G+ V YN+++ Y + G + SL+HEM NGI D T RL
Sbjct: 341 FHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVT--CRLIVEGF 398
Query: 61 ASDHEGIDKILTMMEAD------PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
A D + + + T++E P D++I A G A + L + +
Sbjct: 399 ARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPF-----AARSFLLRISQDG 453
Query: 115 KGAKVNSAYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
K+N+ YN ++ K+ ++ L + E+ K+++ + YR VIS L +++ A
Sbjct: 454 YMPKINT-YNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRTLEA 512
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
E + EE S + D I LI+ YC ++KA +L+
Sbjct: 513 EGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLL 551
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++M LG+ R +N M + K G+ +K+ + +MEE G D TY T +++Y
Sbjct: 237 EEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYCKK 296
Query: 62 SDHEG---IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
E + KI+ + PN+ + + + NG + G + +A + + +
Sbjct: 297 RRLEDAFYLYKIMYIRGVMPNL----ITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPD 352
Query: 119 VNSAYNVILTLYGKYGK 135
V S YN +++ Y + GK
Sbjct: 353 VVS-YNTLVSGYCREGK 368
>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
Length = 999
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 14/223 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR Y+ ++ + G E+ L EM+ GI YT + L+ Y
Sbjct: 304 EMRQCRFVPEEATYSLLISASSRHGKGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNE 363
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D+ +L+ ME + V D VIY + YGK+GL ++A +++ E+I+ A + S
Sbjct: 364 DYSKALSLLSEME-NSKVIPDEVIYGILIRIYGKLGLYEEA----EQTFEKIEKAGLLSD 418
Query: 122 --AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y + ++ G D L + E + + VK + Y ++ + +D+ +AE F
Sbjct: 419 EQTYVAMAQVHLNAGDYDRALEVLESMMMRNVKPSHFSYSAILRCYVAKEDIVAAEDTFR 478
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE 221
L D N L+ +Y R G LEKA LV LK RE
Sbjct: 479 ALSQHGLP-DVFCCNDLLRLYMRLGHLEKARALV----LKMRE 516
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 112/287 (39%), Gaps = 49/287 (17%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY---CTRLSAYADASDHEGIDKIL 71
VYN+M+ + K G E L EM + G D T T L+ + H I
Sbjct: 679 VYNAMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKL--HSAISIYD 736
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLY 130
M+ + + ++ + + + +GK G LDKA+ M ++E G ++ Y +L+LY
Sbjct: 737 RMISSGTSQSMQ--TFNLMISVFGKGGKLDKAVEMFAAAQEL--GLPIDEKMYTNMLSLY 792
Query: 131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
GK G+ + +++ +K D + + F
Sbjct: 793 GKAGRHQEA-------------------SLMFKRMKEDGIRPGKISF------------- 820
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
N +I+ Y +GL +A++ + + G S+ L Y + +A EA++ +
Sbjct: 821 --NSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFSYLALIRAYTEAKLYMEAEEAIRMM 878
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
L + T PS + + F EG IG A+ + + P
Sbjct: 879 LNSSTT-----PSCPHFSHLIFAFLKEGQIGEAQRIYNQMKEASVAP 920
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M++ G+ + +NSM+ Y +G + S HEM++ G D ++Y + AY +
Sbjct: 805 FKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFSYLALIRAYTE 864
Query: 61 ASDHEGIDKILTMM---EADPNVA-LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
A + ++ + MM P+ +I+A + G + ++ Q+K
Sbjct: 865 AKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEG---------QIGEAQRIYNQMKE 915
Query: 117 AKVN---SAYNVILTLYGKYGKKDDVLRIWELYKKAVK 151
A V + ++ +Y ++G D+ + ++E + ++K
Sbjct: 916 ASVAPDLACCRTMMRVYMEHGLMDEGITLYETTRGSLK 953
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
S YN +++ K V+ +W+ ++A + N Y VISS +K D LE A +F E
Sbjct: 245 SVYNYMISSLQKQKLHGKVIHVWKQMREAGALPNQFTYTVVISSFVKEDLLEKAMDVFGE 304
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ + LI R+G E+A L K +G
Sbjct: 305 MRQCRFVPEEATYSLLISASSRHGKGEQALRLFEEMKAQG 344
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 134/302 (44%), Gaps = 9/302 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MRD G+ V+N +++ K G F + T D T+ + A
Sbjct: 53 LDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVK 112
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +I M + V Y TV NG K G LD+A+ +L E V
Sbjct: 113 SGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI 172
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y+V++ K G+ D + E+ ++ + Y +++ L K L+ A ++ +
Sbjct: 173 T-YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELV-Q 230
Query: 180 WESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
++ CY T + N L++++CR+ +++A L+ +G V ++ + G +++
Sbjct: 231 LMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDA 290
Query: 239 QIHKAVEAMKKVLAA--YQTLVKWKPSVESLAACLDYFKD-EGDIGGAENFIELLNDKGF 295
++ A +K+++AA ++ + ++ L C D+ D + + A +E++ G
Sbjct: 291 RLDDAQALLKQMVAARCVPDVITYSTIIDGL--CKDWRVDADWKLEAACEILEMMKQTGC 348
Query: 296 IP 297
P
Sbjct: 349 PP 350
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 94/217 (43%), Gaps = 10/217 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ G Y +++ + ++ +L+ M ++ + D ++ + +
Sbjct: 340 LEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCK 399
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ D + KI MM E PN V YA + +G K G +DKA+ + + E +
Sbjct: 400 SHDLDAAYKIFGMMSERECKPN----PVAYAALIDGLSKGGEVDKAVRVFELMVESFRPG 455
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ YN +L G+ ++ +R+ E + K Y +I L ++ +E A ++
Sbjct: 456 V--ATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYEL 513
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
F+ E++ + + N L++ C+ L A + N
Sbjct: 514 FQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVAN 550
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q M G T V YNS+++L+ ++ ++ L+ M E G D Y T ++
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD---------KALAMLKKSE 111
+ + +L M A V D + Y+T+ +G K +D + L M+K++
Sbjct: 289 DARLDDAQALLKQMVAARCVP-DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQT- 346
Query: 112 EQIKGAKVNSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDD 169
G N+ Y V++ + K L + + V + + + VI SL K D
Sbjct: 347 ----GCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHD 402
Query: 170 LESAEKIF 177
L++A KIF
Sbjct: 403 LDAAYKIF 410
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 11/248 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ GL T V YNS++ G + L+ EM + + + TY ++ Y
Sbjct: 326 FEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCK 385
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
E ++ + PNV + + T+ +GY K G +++A + K E KG
Sbjct: 386 KKLLEEARELFDNIGKQGLTPNV----ITFNTLLHGYCKFGKMEEAFLLQKVMLE--KGF 439
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N S YN ++ + + GK ++V + E+ + VK Y +IS+ + + + A +
Sbjct: 440 LPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAAR 499
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ +E + L N L++ YC G L A NL + +GR +V ++ L GY
Sbjct: 500 LIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYC 559
Query: 236 QNSQIHKA 243
+ ++ A
Sbjct: 560 RKGKLEDA 567
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 23/253 (9%)
Query: 55 LSAYADASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE 111
LSA ++ G++ + M + PN+ + + TV NG KVG L+KA ++ +
Sbjct: 202 LSALVKENEFGGVEFVYKEMIRRKISPNL----ITFNTVINGLCKVGKLNKAGDVV--DD 255
Query: 112 EQIKGAKVNSA-YNVILTLYGKYG------KKDDVLRIWELYKKAVKVLNNGYRNVISSL 164
++ G N YN ++ Y K G K D +L+ E+ + V + + +I
Sbjct: 256 MKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILK--EMVENKVSPNSVTFNVLIDGF 313
Query: 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV 224
K ++L +A K+FEE +SQ L N L++ C G L +A+ L++ + +V
Sbjct: 314 CKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNV 373
Query: 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284
++ L GY + + +A E + Q L P+V + L + G + A
Sbjct: 374 ITYNALINGYCKKKLLEEARELFDNI--GKQGLT---PNVITFNTLLHGYCKFGKMEEAF 428
Query: 285 NFIELLNDKGFIP 297
+++ +KGF+P
Sbjct: 429 LLQKVMLEKGFLP 441
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 11/224 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M L + YN+++ Y K E+ L + + G+T + T+ T L Y
Sbjct: 361 LDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCK 420
Query: 61 ASDHEG---IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
E + K++ PN + Y + G+ + G +++ +L +E Q +G
Sbjct: 421 FGKMEEAFLLQKVMLEKGFLPNAS----TYNCLIVGFCREGKMEEVKNLL--NEMQCRGV 474
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
K ++ YN++++ + + + R I E+ K +K + Y +++ +L +A
Sbjct: 475 KADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALN 534
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ ++ E + + N LI YCR G LE A L+N KG
Sbjct: 535 LRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKG 578
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 117/287 (40%), Gaps = 40/287 (13%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
++ + +N+++ K G K ++ +M+ G + TY T + Y
Sbjct: 226 ISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKM------- 278
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILT 128
G+VG + KA A+LK+ E K + + +NV++
Sbjct: 279 --------------------------GRVGKMYKADAILKEMVEN-KVSPNSVTFNVLID 311
Query: 129 LYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+ K L+++ E+ + +K Y ++++ L L A+ + +E S L
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKP 371
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
+ N LI+ YC+ LLE+A L ++ +G +V ++ L GY + ++ +A
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQ 431
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
K +L + P+ + + F EG + +N + + +G
Sbjct: 432 KVMLEK-----GFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRG 473
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 133/303 (43%), Gaps = 22/303 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR V Y ++L + K F +++ M G + + + + Y +
Sbjct: 294 LHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCN 353
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALA-MLKKSEEQIKGA 117
A D+ K+ M P + + I+ +G+ G+ L + L +++K E++ A
Sbjct: 354 AGDYAYAYKLFNRMTTCGSPPGYVAYNIF--IGSICGQEELPNAELLDLVEKVYEEMLAA 411
Query: 118 -----KVNSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171
KVN+A ++ L GK+ K +L+ E+ +K + Y VI+ L + +E
Sbjct: 412 SCVLNKVNTANFSRCLCGVGKFEKAFQILK--EMMRKGFVPDTSTYTKVITFLCQAKKVE 469
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
+ +F+E + + D LID +C+ GL+E+A + + + G +V ++ L
Sbjct: 470 KSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALL 529
Query: 232 TGYRQNSQIHKAVEAMKKVL--AAYQTLVKWKPSVESLA-------ACLDYFKDEGDIGG 282
Y ++ Q+ +A + +++ A Y V + ++ L AC Y K G G
Sbjct: 530 HAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGN 589
Query: 283 AEN 285
E+
Sbjct: 590 VES 592
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 69/333 (20%), Positives = 134/333 (40%), Gaps = 29/333 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M+ G+ Y ++ + K G E+ S EM G + + TY L AY
Sbjct: 475 FQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLK 534
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ I M D + V Y+ + +G K G + KA + E++ G N
Sbjct: 535 SKQLIQAHDIFHRM-VDAACYPNAVTYSALIDGLCKAGEIQKACEVY----EKLIGTSGN 589
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+ Y + +D I A V+ Y +I L K + A ++ +
Sbjct: 590 VESDF-------YFEGNDTCTI------APNVVT--YGALIDGLCKAQKVSDAHELLDAM 634
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + + + LID +C+ G ++ A+ + G V ++ L ++ ++
Sbjct: 635 LAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRL 694
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
A++ + ++L P+V + A +D G+I A N + L+ +KG P +
Sbjct: 695 DLAMKVLSEMLND-----SCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVV 749
Query: 301 Q-DKLLDNV-QNGKSN--LETLRELYGNSLAGN 329
L+D + + GK++ L+ +++ A N
Sbjct: 750 TYTALIDGLGKTGKADASLKLFKQMNSKGCAPN 782
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 31/228 (13%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G + Y S++ +K G + ++ EM + + TY + +
Sbjct: 668 RMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVG 727
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E +L++ME PNV V Y + +G GK G D +L + K+ KG
Sbjct: 728 EIEKALNLLSLMEEKGCSPNV----VTYTALIDGLGKTGKADASLKLFKQMNS--KGCAP 781
Query: 120 N-SAYNVILTLYGKYGKKDDVLRI--------WELYKKAVKVLNNGY-RNVISSLLKLDD 169
N Y V++ G D+ + W + + G+ + I+SL L++
Sbjct: 782 NYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEE 841
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
+ES E + + LID + + G LE A L H++L
Sbjct: 842 MESHETV----------PIAPVYGMLIDSFSKAGRLETALEL--HKEL 877
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 127/287 (44%), Gaps = 17/287 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ Y+ +L Y G F +++L H M +NGI D + + ++A+A + I T
Sbjct: 413 ISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTE 472
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGK 132
M V+ + V YATV ++G L A AM K S+ G K N+ Y+ ++ +
Sbjct: 473 MRGQ-GVSPNVVTYATVIAALCRMGRL--ADAMEKLSQMISIGLKPNTVVYHSLIQGFCT 529
Query: 133 YGKKDDVLR----IWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+G D+++ + E+ + + N + ++I SL + +A+ +F
Sbjct: 530 HG---DLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRP 586
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D N LID YC G ++KA +++ G E V ++ L GY ++ +I +
Sbjct: 587 DIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILF 646
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+++L + KP+ + + LD G A+ + + G
Sbjct: 647 REMLCK-----RVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESG 688
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 7/231 (3%)
Query: 8 GLARTTVVYNSMLK-LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS-DHE 65
GL +V N+ LK L Y E L L+H M E G D ++Y T + + S E
Sbjct: 195 GLRTDGIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQE 254
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YN 124
+D +L M + D + D V Y V +G G + KA + + + KG N YN
Sbjct: 255 ALDMLLRMTKGD-GCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQ--KGVVPNVVTYN 311
Query: 125 VILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
I+ K D L + +++ +++ Y +I L + A K+F+E +
Sbjct: 312 SIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTRE 371
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
L D N L+D C++ ++A + + KG + + S+ L GY
Sbjct: 372 GLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGY 422
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 16/221 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M +GL TVVY+S+++ + G+ K L+ EM + GI T+ S+
Sbjct: 505 LSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITF---FSSIIH 561
Query: 61 ASDHEG-------IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113
+ +EG + ++ + P D + ++ +GY VG +DKA +L
Sbjct: 562 SLCNEGRVMNAQDVFNLVIHIGDRP----DIFTFNSLIDGYCLVGKMDKAFGVLDAMVSA 617
Query: 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLES 172
V + Y+ ++ Y K G+ DD L ++ E+ K VK Y V+ L + +
Sbjct: 618 GTEPDVVT-YSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSA 676
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
A+K+F E ++ CRN ++A L +
Sbjct: 677 AKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFH 717
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 38/242 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ V YNS++ K +K + ++ +M +N I D TY + Y+ +
Sbjct: 302 GVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEA 361
Query: 68 DKILTMMEAD---PNVAL-------------------------------DWVIYATVGNG 93
K+ M + P++ D + Y+ + +G
Sbjct: 362 AKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHG 421
Query: 94 YGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVK 151
Y G + + G +S +N+++ + K G D+ L I+ E+ + V
Sbjct: 422 YATEGRFVDMNNLFHSMTDN--GIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVS 479
Query: 152 VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
Y VI++L ++ L A + + S L +T + + LI +C +G L KA+ L
Sbjct: 480 PNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKEL 539
Query: 212 VN 213
V+
Sbjct: 540 VS 541
>gi|357447289|ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482968|gb|AES64171.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 801
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 121/271 (44%), Gaps = 40/271 (14%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+K+ D + + V++N ++K Y ++ E+ +L+ M + G+ + T LS Y+ +
Sbjct: 266 RKVFDGVVEKDVVLWNCLIKNYARSCLVEEAVALLQSMRQEGVKPNSSTLVGLLSVYSAS 325
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+G+ + +++E + + LD ++ + + Y K G LD+A+ + ++ E K
Sbjct: 326 GSMQGVRYVTSLIEEE-KLELDVILGTALVDVYAKCGFLDEAMEIFERMEN-----KDVK 379
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR-NVISSLLKLDDLESA------- 173
++ +++ +G +G+ + + ++ ++ N G+R N I+ L L
Sbjct: 380 SWTAVISGHGIHGQAINAISLFN------RMENEGFRPNEITFLAILTACSHGGLVTEGV 433
Query: 174 --------EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225
E F W C LID+ R G+L +A L+ +KG
Sbjct: 434 EFFKRMVQEHGFSPWVEHYGC--------LIDLLGRAGMLHEAFELIKSLPIKG---DAT 482
Query: 226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQT 256
SW L + R + + K E +K VL+ + T
Sbjct: 483 SWRTLLSACRVHGDV-KLGECVKDVLSNFYT 512
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 10/296 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++ + Y S+L K+G E+ ++ +M E G D Y + +
Sbjct: 729 MKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGK 788
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
I M A D V Y+++ + GK G +++A + S KG N
Sbjct: 789 LSHALIIFRAM-AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSIS--KGCTPNVGV 845
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y+ ++ +GK G D L ++E + ++ Y N++S L K L AEK+ EE E
Sbjct: 846 YSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEME 905
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
D N LID + G++++AE+ K KG V ++ L + ++
Sbjct: 906 KVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLL 965
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+A E + + PSV + +D G + A + KG +P
Sbjct: 966 EACELFDSMEEE-----GYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMP 1016
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/393 (20%), Positives = 157/393 (39%), Gaps = 103/393 (26%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENG----ITYD------------ 47
+++ G YN+++ + K G +K+ +++ EM E G I+ D
Sbjct: 453 LKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGA 512
Query: 48 ---------------RYTYCTRLSAYADASDHEGIDKILTMM---EADPNVALDWVIYAT 89
TY T +SA+ + K+L +M E P V V Y T
Sbjct: 513 DRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTV----VTYTT 568
Query: 90 VGNGYGKVGLLDKALAMLKKSEEQ---------------------------------IKG 116
+ +G GK G LD+A+++L++ E+Q KG
Sbjct: 569 LVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKG 628
Query: 117 AKVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ S Y++++ K D L ++ + ++ ++ L Y+ ++SSL+K + ++ A
Sbjct: 629 CVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFAL 688
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+IF E + +L DT + N +++ ++ +++A LV+ K + + ++ L G
Sbjct: 689 QIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGL 748
Query: 235 RQNSQIHKAVEAMKKV--------LAAYQTLV----------------------KWKPSV 264
++ ++ +A K+ + AY +L+ + P V
Sbjct: 749 GKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDV 808
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ ++ +D EG + A F E KG P
Sbjct: 809 VTYSSLIDSLGKEGRVEEAYYFFENSISKGCTP 841
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 120/281 (42%), Gaps = 42/281 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+D GL YN M+ + K G + L H+++E G D +TY T +
Sbjct: 415 FKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGK 474
Query: 61 ASDHEGIDKILTMME-------------------------ADPNV--------ALDWVIY 87
+DK+L +++ AD V +L + Y
Sbjct: 475 GGQ---MDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITY 531
Query: 88 ATVGNGYGKVGLLDKALAMLK--KSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-E 144
T+ + + G +D+A+ +L+ K E I Y ++ GK G+ D+ + + E
Sbjct: 532 NTLMSAFIHNGHVDEAVKLLEVMKKHECIPTV---VTYTTLVDGLGKAGRLDEAVSLLRE 588
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ K+ + Y ++++S K D E + +F+E + D + +I+ C++
Sbjct: 589 MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD 648
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+++A ++ K +G E + ++ L + ++ +I A++
Sbjct: 649 VDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQ 689
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 71/369 (19%), Positives = 144/369 (39%), Gaps = 80/369 (21%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G + V Y+S++ +YK E+ SL EM G D TY ++
Sbjct: 586 LREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCK 645
Query: 61 ASD------------HEGIDKIL----TMMEA------------------DPNVALDWVI 86
+ D EG++ +L T++ + + ++ D +
Sbjct: 646 SDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFV 705
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQ----------------IKGAKVNSAYNV----- 125
Y + NG K +D+A ++ + Q K ++ A+N+
Sbjct: 706 YNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMT 765
Query: 126 -------------ILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLE 171
++ + GK GK L I+ K V + Y ++I SL K +E
Sbjct: 766 EEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVE 825
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A FE S+ + + + LID + + G++++A L + + ++ ++ L
Sbjct: 826 EAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLL 885
Query: 232 TGYRQNSQIH---KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
+G + +++ K +E M+KV P + + +D G + AE++ +
Sbjct: 886 SGLAKAGRLNVAEKLLEEMEKVGCV--------PDLVTYNILIDGVGKMGMVDEAESYFK 937
Query: 289 LLNDKGFIP 297
+ +KG +P
Sbjct: 938 RMKEKGIVP 946
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 54/266 (20%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M++L + V Y +++ K G E+ + EM+EN C+
Sbjct: 348 MKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENN--------CSP--------- 390
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
D + Y T+ +G GK G D A + K+ ++ +G N
Sbjct: 391 -------------------DAIAYNTLIDGLGKAGEADMACGLFKEMKD--RGLVPNLRT 429
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEW- 180
YN+++++ GK G++ + +++ K+ V + Y +I L K ++ I +E
Sbjct: 430 YNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMV 489
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E C +R N G +E A+ V + L + + ++ L + + N +
Sbjct: 490 EKGGECIISRDSN-----AGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHV 544
Query: 241 HKAV---EAMKK-----VLAAYQTLV 258
+AV E MKK + Y TLV
Sbjct: 545 DEAVKLLEVMKKHECIPTVVTYTTLV 570
>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K+ D G++ +YN ++ KTG F L EM + I D Y Y T + + +
Sbjct: 440 KLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSG 499
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNS 121
D + K+ + + + V +D V + + G+ + G+LD+ALA + + +EE + K
Sbjct: 500 DFDEARKVFS-LSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFT- 557
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y+ I+ Y K ++I+ + K K Y ++I+ D + AE+ F+E
Sbjct: 558 -YSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEM 616
Query: 181 ESQALCYDTRIPNFL 195
+ + L +PN +
Sbjct: 617 QLRDL-----VPNVV 626
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 126/287 (43%), Gaps = 16/287 (5%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ++ K G E + E + G+ + +Y + AY + +++ K+L M
Sbjct: 348 YNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQM- 406
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYG 134
A+ D V Y + +G G +D A+ M K + +G ++A YN++++ K G
Sbjct: 407 AERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLID--RGVSPDAAIYNMLMSGLCKTG 464
Query: 135 KKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ L E+ + + Y +I ++ D + A K+F + + D N
Sbjct: 465 RFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHN 524
Query: 194 FLIDVYCRNGLLEKA---ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+I +CR+G+L++A N +N E L + ++ + GY + + A++ +
Sbjct: 525 AMIKGFCRSGMLDEALACMNRMNEEHLVPDKF---TYSTIIDGYVKQQDMATAIKIFR-- 579
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Y K KP+V + + ++ F +GD AE + + + +P
Sbjct: 580 ---YMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVP 623
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +I KL D+E+A +F+E + + +I+ +C+ G ++ L++ +
Sbjct: 243 YNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLS--E 300
Query: 217 LKGREIHVKSWY---YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273
+K R + V W+ + YR ++ A E++ ++A KP V + ++
Sbjct: 301 VKERGLRVSVWFLNNIIDAKYRHGYKVDPA-ESIGWIIAN-----DCKPDVATYNILINR 354
Query: 274 FKDEGDIGGAENFIELLNDKGFIPTDLQ 301
EG A F++ + KG IP +L
Sbjct: 355 LCKEGKKEVAVGFLDEASKKGLIPNNLS 382
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 110/247 (44%), Gaps = 11/247 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-D 60
++M D+G+ Y +++K + +TG E + +EM + G+ + + T + A+ +
Sbjct: 244 KEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKE 303
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + G+D M V D V Y + NG + L A +++ E++K A +
Sbjct: 304 GNVNAGMDLYQDMRVR--GVMPDLVAYNALVNGLCRARNLKAAESIV----EEMKNAGLK 357
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ K GK D + I + + +K V + Y +IS L K AE++
Sbjct: 358 PDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERV 417
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E AL D +ID +CR G ++ L+ + KG++ V ++ + G +
Sbjct: 418 LREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCK 477
Query: 237 NSQIHKA 243
Q+ A
Sbjct: 478 LGQMKNA 484
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M++ GL V Y +++ K G + + +M E ++ D TY +S +
Sbjct: 348 VEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSK 407
Query: 61 ASDHEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
A +++L MMEA + D Y V + + + G + +LK E Q KG K
Sbjct: 408 AGRPVDAERVLREMMEA--ALEPDNTTYTMVIDAFCRKGDVKTGFKLLK--EMQNKGKKP 463
Query: 120 NSA-YNVILTLYGKYGK 135
YNVI+ K G+
Sbjct: 464 GVVTYNVIMNGLCKLGQ 480
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/177 (16%), Positives = 76/177 (42%), Gaps = 9/177 (5%)
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+NV++ + + G+ ++++ +++V+ + +IS + + DL++ + +++E
Sbjct: 189 FNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSD 248
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ D LI +CR G +E A + N + G + + L + + ++
Sbjct: 249 VGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNA 308
Query: 243 AVEAMK--KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ + +V LV + V L ++ AE+ +E + + G P
Sbjct: 309 GMDLYQDMRVRGVMPDLVAYNALVNGLC-------RARNLKAAESIVEEMKNAGLKP 358
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 17/220 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G A YN++L + K E L+ +M G D +Y T ++
Sbjct: 253 LEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCK 312
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +++ M PNV + Y T+ +G+ +VG LD A+ +++K E +G
Sbjct: 313 LDQVDEACRVMDKMIQRGCQPNV----ITYGTLVDGFCRVGDLDGAVELVRKMTE--RGY 366
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN----GYRNVISSLLKLDDLES 172
+ N+ YN I+ + + +++D+ R ++ + ++ Y +IS K L
Sbjct: 367 RPNAITYNNIMHV---FCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLRE 423
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
A + E+ + D + LID C+ ++ A+ L+
Sbjct: 424 AHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL 463
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 132/303 (43%), Gaps = 17/303 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENG-ITYDRYTYCTRLSAYA 59
+++M G+ + +++N ++K + L EMEE+G D +TY T + +
Sbjct: 900 LKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLV 959
Query: 60 DASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ + +++ M + PNV V Y+++ +G K G LD+A A+L++ G
Sbjct: 960 KSGKVDDACRLVEDMVSKGCSPNV----VTYSSLLHGLCKAGKLDEATALLQRMTRS--G 1013
Query: 117 AKVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
N YN I+ + K G+ D+ + E+ + Y ++ + K E A
Sbjct: 1014 CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAI 1073
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+ E + + N L+D++C+ +E+A L++ KG +V S+ + G
Sbjct: 1074 GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133
Query: 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ +++H+ V ++++L+ P + + +D + A L+ + G
Sbjct: 1134 CKATKVHEGVLLLEQMLSN-----NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 1188
Query: 295 FIP 297
P
Sbjct: 1189 CTP 1191
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 17/244 (6%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+V YN+M+ K+ + L+ EM +NG + ++Y T L + A+ E +L
Sbjct: 230 SVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLE 289
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYG 131
M D V Y TV NG K+ +D+A ++ K + +G + N Y ++ +
Sbjct: 290 QM-VTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQ--RGCQPNVITYGTLVDGFC 346
Query: 132 KYGKKDDVLRIWELYKKAVKVLNNGYR-------NVISSLLKLDDLESAEKIFEEWESQA 184
+ G D + EL +K + GYR N++ + +D+E A ++ +
Sbjct: 347 RVGDLDGAV---ELVRKMTE---RGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTG 400
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D + +I +C+ G L +A +L+ +G V L + + I A
Sbjct: 401 CPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQ 460
Query: 245 EAMK 248
E ++
Sbjct: 461 ELLR 464
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 8/216 (3%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLR 141
D V Y+T+ +G+ + G + A + E KG K ++ + IL G+ D +
Sbjct: 160 DTVTYSTLISGFIRAGKILPAYELF--DEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVL 217
Query: 142 IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
+ K + Y +I+ L K D L+ A ++ EE + N ++ +C+
Sbjct: 218 HFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCK 277
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
+E A L+ +G V S+ + G + Q+ +A M K++ +
Sbjct: 278 ANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQR-----GCQ 332
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
P+V + +D F GD+ GA + + ++G+ P
Sbjct: 333 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRP 368
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 108/254 (42%), Gaps = 23/254 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M G + V Y+S+L K G ++ +L+ M +G + + TY T + +
Sbjct: 971 VEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCK 1030
Query: 61 ASDHEGIDKILTMME------ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114
ID+ ++E PNV V Y + + + K G + A+ +++ E
Sbjct: 1031 LGR---IDEAYHLLEEMVDGGCQPNV----VTYTVLLDAFCKCGKAEDAIGLVEVMVE-- 1081
Query: 115 KGAKVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNN--GYRNVISSLLKLDD 169
KG N YN +L + + KKD+V R +L ++ + N Y VI+ L K
Sbjct: 1082 KGYVPNLFTYNSLLDM---FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATK 1138
Query: 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
+ + E+ S D N +ID C+ ++ A L N + G ++ ++
Sbjct: 1139 VHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNS 1198
Query: 230 LATGYRQNSQIHKA 243
L G ++ + +A
Sbjct: 1199 LVHGLCKSRRFDQA 1212
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/360 (19%), Positives = 137/360 (38%), Gaps = 45/360 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M KM G + Y +++ + + G+ + L+ +M E G + TY + +
Sbjct: 323 MDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCR 382
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------- 113
+D E ++L MM D + Y+T+ +G+ K G L +A +L++ +
Sbjct: 383 RNDMERAHQVLQMM-IQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVA 441
Query: 114 ---------IKGAKVNSAYNVILTLYGKYGKKDDV---LRIWELYKKA----------VK 151
K A ++SA ++ G D V + I L K V
Sbjct: 442 CLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVM 501
Query: 152 VLNNGYRNVISSLLKLDDLESAEKI------FEEWESQALCYDTRIPNFLIDVYCRNGLL 205
V N Y +V++ +D L + +I F+ + + D + +I +C++ L
Sbjct: 502 VKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNL 561
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE 265
+ A ++ K V ++ L G + + KA + +++L P++
Sbjct: 562 DSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGC-----GCAPNLV 616
Query: 266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLE----TLREL 321
+ +D + A +E++ + P + L N S LE LRE+
Sbjct: 617 TYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREM 676
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 124/309 (40%), Gaps = 57/309 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M + G YNS+L ++ K E+ L+ M + G + +Y T ++
Sbjct: 1076 VEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 1135
Query: 61 ASD-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------ 113
A+ HEG+ + M+ N D V + T+ + K +D A + +E
Sbjct: 1136 ATKVHEGVLLLEQMLSN--NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNL 1193
Query: 114 ----------IKGAKVNSAYNVILTLYGKYGKKDDVL-------------RIWELYKKAV 150
K + + A ++ + K G D++ R+ YK +
Sbjct: 1194 VTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFL 1253
Query: 151 KVLNNG-------YRNVISSLLKLDDLESAEKIFE-----EWESQALCYDTRIPNFLIDV 198
++L++G Y VISSL K ++ A + E ++ A+ Y T LID
Sbjct: 1254 QMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGT-----LIDG 1308
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA----- 253
+C+ G L+KA ++ KG V ++ + ++ +A E ++ +L A
Sbjct: 1309 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPD 1368
Query: 254 ---YQTLVK 259
Y TL+K
Sbjct: 1369 TVTYNTLLK 1377
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 130/315 (41%), Gaps = 41/315 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
+Q+M G + V YN+++ + K G ++ L+ EM + G + TY L A+
Sbjct: 1006 LQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCK 1065
Query: 60 --DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A D G+ +++ PN+ Y ++ + + K +++A +L + KG
Sbjct: 1066 CGKAEDAIGLVEVMVEKGYVPNL----FTYNSLLDMFCKKDEVERACQLLSSMIQ--KGC 1119
Query: 118 KVN-SAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N +YN ++ K K + VL + ++ + +I ++ K ++ A +
Sbjct: 1120 VPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYE 1179
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLATGY 234
+F + + N L+ C++ ++AE L+ + +G + ++ + G
Sbjct: 1180 LFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL 1239
Query: 235 RQNSQIHKAVEAMKKVLA------------AYQTLVKWKPSVESLAACLDYFKDEGDIGG 282
++ ++ +A + ++L+ +L KW+ F DE
Sbjct: 1240 CKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWR------------FMDE----- 1282
Query: 283 AENFIELLNDKGFIP 297
A N +EL+ GF P
Sbjct: 1283 ANNVLELMLKNGFDP 1297
>gi|297834428|ref|XP_002885096.1| hypothetical protein ARALYDRAFT_479008 [Arabidopsis lyrata subsp.
lyrata]
gi|297330936|gb|EFH61355.1| hypothetical protein ARALYDRAFT_479008 [Arabidopsis lyrata subsp.
lyrata]
Length = 605
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 31/293 (10%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM++L + N +L L Y + +K+ ++ ME I R TY +++ A
Sbjct: 262 KMKELKFPTSVFACNQLL-LLYSMHDRKKISDVLLLMERENIKPSRGTYQFLINSKGLAG 320
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G++KI+ M+ + + +D + AT+ Y + GL ++A ++K +I+G +
Sbjct: 321 DITGMEKIVETMKEE-GIEVDPELQATLAKYYIRAGLKERAQDLMK----EIEGKGLQQT 375
Query: 123 YNV---ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE----- 174
V +L LY G D+V R+ + ++ Y N IS++ L+ E
Sbjct: 376 PWVCRSLLPLYADIGDSDNVRRLSTFVDQNLR-----YDNCISAIRAWGKLKEVEEAEAV 430
Query: 175 --KIFEEWESQALCYDTRIPNF-LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
++ E+++ + +P F L+++Y N +L K ++LV G I +W+ L
Sbjct: 431 FERLVEKYKIFPM-----LPYFALMEIYTENKMLAKGKDLVKRMGNAGVTIGPSTWHALV 485
Query: 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284
Y + ++ KA + +L K +P S A L+ + GD+ E
Sbjct: 486 KLYIKAGEVGKA----ELILNRATKDNKMRPMFISYMAILEEYAKRGDVHNTE 534
>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
Length = 768
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 5/249 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M GL V+Y +L K G + ++ + GI Y L YA
Sbjct: 260 LQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYAT 319
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-IKGAKV 119
+ L +M + V+ D I+ + N Y K ++D+A+ + K +Q + V
Sbjct: 320 EGALSEMHSFLDLMVRN-GVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVV 378
Query: 120 NSAYNVILTLYGKYGKKDD-VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
N Y ++ K G+ DD VL+ ++ + V + +++ L +D E AEK+F
Sbjct: 379 N--YGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFF 436
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E Q + + N L+ CR G + +A+ L++ V S+ L G+
Sbjct: 437 EVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTG 496
Query: 239 QIHKAVEAM 247
+I +A + +
Sbjct: 497 RIDEAAKLL 505
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 92/247 (37%), Gaps = 49/247 (19%)
Query: 13 TVVYNSMLKLYYKTGNF-EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
TV++ +LK E D L+ M E G T + +Y L + E +++
Sbjct: 128 TVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELM 187
Query: 72 TMMEAD------PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
MM D PNV V Y TV +G K ++D+A + +
Sbjct: 188 HMMADDGDGSHTPNV----VTYTTVIDGLCKAQMVDRAKGVFQ----------------- 226
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ K V+ N+ Y +I L + ++ +E + L
Sbjct: 227 ------------------HMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGL 268
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN---SQIHK 242
D I L+D C+NG +A N+ + KG + HV + L GY S++H
Sbjct: 269 QPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHS 328
Query: 243 AVEAMKK 249
++ M +
Sbjct: 329 FLDLMVR 335
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 11/198 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA-YADAS 62
M +GL YN++L Y K + SL EM G+T TY T L +
Sbjct: 508 MVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGR 567
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK---KSEEQIKGAKV 119
E + L M+ + D Y + NG + +D+A M + + Q+ +
Sbjct: 568 FCEAKELYLNMI--NNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTI 625
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
N +L K G+K+D + ++ V + YR + +L+K LE +++F
Sbjct: 626 NIMIGALL----KGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFS 681
Query: 179 EWESQALCYDTRIPNFLI 196
E ++R+ N L+
Sbjct: 682 AMEENGTAPNSRMLNALV 699
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 127/320 (39%), Gaps = 41/320 (12%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V Y S+++ K E+ + +M G D YTY + A + K L
Sbjct: 12 VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ---------------IKGAK 118
M A+ N+ + V Y + +G K G +D+A+A+L K ++ K +
Sbjct: 72 M-ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAER 130
Query: 119 VNSAYNV------------------ILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN 159
+ AY++ ++T + K K DD LR++E L + + Y
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190
Query: 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLK 218
+I L K L+ A +F C + N LI +CR G +++A NL+
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250
Query: 219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG 278
G V ++ L G+ + +++ A + + ++ T P V + + +D E
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQM-----TRKGLTPDVVTFTSLMDGLCREN 305
Query: 279 DIGGAENFIELLNDKGFIPT 298
+ A + + + K PT
Sbjct: 306 RLSDAVHILGEMRRKSCSPT 325
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 115/271 (42%), Gaps = 7/271 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KMR + T V YNS++ K + L+ EM +G D +TY T ++ +
Sbjct: 104 LSKMRKKCVP-TAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ++ + A D V Y+ + +G K G L +A+ + + +
Sbjct: 163 SKKSDDALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNT 221
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK---AVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN +++ + + GK D+ + + E + + V+ Y +++ KL L+ A +
Sbjct: 222 VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVT--YTTLMNGFCKLARLDDAYDLL 279
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ + L D L+D CR L A +++ + K V ++ + GY +
Sbjct: 280 NQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRA 339
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268
+Q+ +A + M + + +V + + L
Sbjct: 340 NQLEEARKFMLEEMDCPPNVVSFNIMIRGLC 370
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 3/196 (1%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
TV YNS++ + + G ++ +L+ M E G + D TY T ++ + + + +L
Sbjct: 221 TVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLN 280
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M + D V + ++ +G + L A+ +L + + V + YN IL Y +
Sbjct: 281 QM-TRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT-YNTILDGYCR 338
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ ++ R + L + + +I L K++ A ++ EE + D +
Sbjct: 339 ANQLEEA-RKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397
Query: 193 NFLIDVYCRNGLLEKA 208
+ID CR +++A
Sbjct: 398 TTVIDGLCREKKVDEA 413
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 48/255 (18%), Positives = 107/255 (41%), Gaps = 22/255 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G + V Y +++ + K + L+++M G+T D T+ + +
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ IL M P V Y T+ +GY + L++A + E++
Sbjct: 304 ENRLSDAVHILGEMRRKSCSPTV----YTYNTILDGYCRANQLEEARKFML---EEMDCP 356
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNVISSLLKLDDLESA 173
++N+++ K + + + EL ++A + N Y VI L + ++ A
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAM---ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEA 413
Query: 174 EKIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
+++ + + C I + LI C G+L++A + KG ++ ++ L
Sbjct: 414 CRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIE----KGCVPNIGTYNLLID 469
Query: 233 GYRQNSQIHKAVEAM 247
+R+ ++ A E +
Sbjct: 470 AFRKANRDEDARELL 484
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 9/218 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M G+ VVYN+++ + + G + + L+ +M E G+ D T+ +R+SA
Sbjct: 205 LNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCK 264
Query: 61 ASDHEGIDKILTMMEADPNVAL---DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+I + ME D + L + + Y + G+ KVGLL+ A + + E
Sbjct: 265 EGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLV 324
Query: 118 KVNSAYNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ S YN+ L +GK+ + + VL+ ++ K + Y ++ L KL L A+
Sbjct: 325 SLQS-YNIWLQGLVRHGKFIEAETVLK--QMIDKGIGPSIYSYNILMDGLCKLGMLSDAK 381
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
I + + D L+ YC G ++ A++L+
Sbjct: 382 TIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLL 419
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 123/288 (42%), Gaps = 12/288 (4%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+YN +L+ + E + L +M GI+ + YT+ + A D+S + ++ M
Sbjct: 114 LYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEM 173
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
+ + + + GY K GL DK L +L S E YN I++ + + G
Sbjct: 174 -PEKGCKPNEFTFGILVRGYCKAGLTDKGLELL-NSMESFGVLPNKVVYNTIVSSFCREG 231
Query: 135 KKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQ---ALCYDTR 190
+ DD ++ E ++ V + + + IS+L K + A +IF + E L
Sbjct: 232 RNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNS 291
Query: 191 IP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
I N ++ +C+ GLLE A+ L + + ++S+ G ++ + +A +K+
Sbjct: 292 ITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQ 351
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ PS+ S +D G + A+ + L+ G P
Sbjct: 352 MIDK-----GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSP 394
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 69/365 (18%), Positives = 141/365 (38%), Gaps = 45/365 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G+ + YN ++ K G +++ M+ NG++ D TY L Y
Sbjct: 349 LKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCS 408
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +L M + PN ++ ++ N +G + +A +L+K E+ G
Sbjct: 409 VGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWN----MGRISEAEELLRKMNEKGYGL 464
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNG----------------- 156
+ N+I+ G+ D + I + + A+ L N
Sbjct: 465 DTVTC-NIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPD 523
Query: 157 ---YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
Y +++ L K A+ +F E + L D+ N I +C+ G + A ++
Sbjct: 524 LITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLK 583
Query: 214 HEKLKGREIHVKSWYYLATGY---RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270
+ KG ++++ L G Q +IH ++ M++ P++ +
Sbjct: 584 DMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMRE--------KGISPNICTYNTA 635
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY--GNSLAG 328
+ Y + G + A N ++ + K P K L + + +E++ S+ G
Sbjct: 636 IQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICG 695
Query: 329 NEETL 333
+E L
Sbjct: 696 QKEGL 700
>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 481
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 18/325 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKM +LG+ RT YN++ K+ + G + ++M GI R+T+ + +
Sbjct: 103 FQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFL 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M++ ++ D V Y T NGY +V +++A +K ++KG +
Sbjct: 163 SGKVETANRFFEDMKSR-EISPDVVTYNTXINGYYRVKKMEEA----EKYFVEMKGRNIE 217
Query: 121 S---AYNVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKI 176
Y ++ Y + D LR+ E K +K Y ++ L + + A I
Sbjct: 218 PTVVTYTTLIKGYVSVDQVDXALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVI 277
Query: 177 FEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E + L D I LI +C +G L+ A +++ + L +
Sbjct: 278 LKEMMDKYLAPTDNSIFMRLISSHCXSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFC 337
Query: 236 QNSQIHKAVEAM-----KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
+ Q KAV+ + K ++ Q+ + +PS + ++Y + G AE + L
Sbjct: 338 KXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPS--AYNPXIEYLCNNGQAXKAETLVRQL 395
Query: 291 NDKGFI-PTDLQDKLLDNVQNGKSN 314
G PT L + + Q G +
Sbjct: 396 MKLGVQDPTALNTLIRGHSQEGSPD 420
>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
Length = 482
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 24/246 (9%)
Query: 1 MQKMRDLGLARTTVV-YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM+ + + +V YN +L+ + + G+ ++LD L +++E+ ++ D YTY + AY
Sbjct: 170 FEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYG 229
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ +L M+++ D + + + + YG+ DK + + KS + K
Sbjct: 230 KNGMITEMESVLVRMKSN-QCRPDVITFNILIDSYGRKQAFDK-MEQVFKSLLRSKEKPT 287
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN----GYRN-------VISSLLKLD 168
+ +N ++T YGK L +KA VL+ G++ +I D
Sbjct: 288 HPTFNSMITNYGKA----------RLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCD 337
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
+ A +IF+E S N ++D YC NGL +A+ L++ KG ++
Sbjct: 338 CVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYK 397
Query: 229 YLATGY 234
L Y
Sbjct: 398 LLYKAY 403
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 123/313 (39%), Gaps = 47/313 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + YN+++ K E+ +++ M + G+T D TY + A+ AS +
Sbjct: 211 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR---V 267
Query: 68 DKILTMME------ADPNVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------- 113
D+ L ++ PNV + D V + + G K G ++A A+ ++ +
Sbjct: 268 DEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVM 327
Query: 114 ---------IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164
K +V +A + IL L G G +V+ Y ++ L
Sbjct: 328 TFGALIDGLCKAGQVEAARD-ILDLMGNLGVPPNVVT---------------YNALVHGL 371
Query: 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV 224
K +E A + EE S D+ L+ CR + A LV+ K G +
Sbjct: 372 CKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDT 431
Query: 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284
++ L G ++ + +A+ +++++ +P + AAC G++ G
Sbjct: 432 VTYNILVDGLWKSGKTEQAITVLEEMVGKGH-----QPDSFTFAACFSGLHRSGNLAGTM 486
Query: 285 NFIELLNDKGFIP 297
+ ++ KG +P
Sbjct: 487 ELLRVVLAKGMLP 499
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 135/340 (39%), Gaps = 57/340 (16%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
RD G+A T V YN+++ K+ + L E+ E G D TY T + + A D
Sbjct: 30 RD-GVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDL 88
Query: 65 EGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKAL----------------- 104
E ++ M + PNV V Y+ + NG KVG +D+A
Sbjct: 89 EEARRLHGDMSSRGCVPNV----VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNI 144
Query: 105 -------------AMLKKSEEQIKGAKVNS--------AYNVILTLYGKYGKKDDVLRIW 143
+M ++ E ++ + S ++ ++ K G+ D+ ++
Sbjct: 145 ITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVF 204
Query: 144 ELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202
+ V N Y +++ L K D +E A + E + + D + L+D +C+
Sbjct: 205 DDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKA 264
Query: 203 GLLEKAENLVNHEKLKGREIHV-----KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
+++A L++ +G +V ++ L G + +A ++++A
Sbjct: 265 SRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK---- 320
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+P V + A +D G + A + ++L+ + G P
Sbjct: 321 -NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 359
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 108/255 (42%), Gaps = 33/255 (12%)
Query: 1 MQKMRD--LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAY 58
M+ +RD L ++ TV +++++ K G ++ S+ +M G + TY ++
Sbjct: 167 MRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 226
Query: 59 ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A E ++ M D V D + Y+ + + + K +D+AL +L A
Sbjct: 227 CKADKMERAHAMIESM-VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM------AS 279
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
NV++ D V + +I+ K + E A +FE
Sbjct: 280 RGCTPNVLV--------PDKVT----------------FNILIAGACKAGNFEQASALFE 315
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E ++ L D LID C+ G +E A ++++ G +V ++ L G ++
Sbjct: 316 EMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSG 375
Query: 239 QIHKAVEAMKKVLAA 253
+I +A + +++++++
Sbjct: 376 RIEEACQFLEEMVSS 390
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 123 YNVILTLYGKYGKKDDVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN++L + G L I+ E+ + V Y +I+ L K +DL + ++FEE
Sbjct: 4 YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ D N LID C+ G LE+A L +G +V ++ L G + +I
Sbjct: 64 VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123
Query: 241 HKAVEAMKKV 250
+A E ++++
Sbjct: 124 DEARELIQEM 133
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +LG+ V YN+++ K+G E+ + EM +G D TY + + A AS
Sbjct: 352 MGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASR 411
Query: 64 HEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++++ +++ DP D V Y + +G K G ++A+ +L EE +
Sbjct: 412 TDDALQLVSELKSFGWDP----DTVTYNILVDGLWKSGKTEQAITVL---EEMVGKGHQP 464
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY---RNVISSLL-------KLDDL 170
++ G + + ++ EL + VL G SS+L KLDD+
Sbjct: 465 DSFTFAACFSGLH-RSGNLAGTMELLR---VVLAKGMLPDATTCSSILDWVCRSGKLDDV 520
Query: 171 ESAEKIFE 178
++ K FE
Sbjct: 521 KAMIKEFE 528
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 5/223 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G A + YN ++K + K+G ++ L+ EM +T D TY T + + +
Sbjct: 252 GCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDA 311
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
K+L M + + D + Y+ V +G K G LD+A +LK +E + Y +++
Sbjct: 312 QKLLEEMRSY-GLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNI-FIYTILI 369
Query: 128 TLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+GK + ++ L+ K ++ Y +IS LLK A ++F +
Sbjct: 370 QGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCL 429
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
++ N +I + RNG A L+ E++ GR S +
Sbjct: 430 PNSCTYNVIIQGFLRNGDTSNAGRLI--EEMVGRGFSADSSTF 470
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/326 (19%), Positives = 140/326 (42%), Gaps = 14/326 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-DA 61
+M +G + Y++++ K G+ L+ +MEE G + Y T + + D
Sbjct: 72 EMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDK 131
Query: 62 SDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E ++ + M+ PNV V Y+++ +G+ +G ++A ++ K+ E+
Sbjct: 132 LITEAMEFLSEMVNRGISPNV----VTYSSILHGFCNLGRSNEATSLFKQMVER-NVMPD 186
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+N+++ K G + ++E + +K V+ N Y ++ ++ A+K+F
Sbjct: 187 TVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFN 246
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ R N LI +C++G +++A+ L+ K ++ L G+ Q+
Sbjct: 247 IMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDG 306
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A + +++ + +Y L P + + + LD +G + A ++ + + P
Sbjct: 307 RPQDAQKLLEE-MRSYGLL----PDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPN 361
Query: 299 DLQDKLLDNVQNGKSNLETLRELYGN 324
+L LE REL+ N
Sbjct: 362 IFIYTILIQGMCNFGKLEAARELFSN 387
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 24/273 (8%)
Query: 34 SLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI-----LTMMEADPNVALDWVIYA 88
S++ M + G+ + T+ T L+ + S + ID + + M +P D + Y+
Sbjct: 33 SVLGNMFKLGLQPNHVTFSTLLNGLS--SKAKIIDAVKLFDEMVKMGYEP----DVITYS 86
Query: 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYGKKDDVLR-IWELY 146
T+ NG K+G A+ +LKK EE KG K N Y+ I+ K + + + E+
Sbjct: 87 TIINGLCKMGSTTMAIQLLKKMEE--KGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMV 144
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
+ + Y +++ L A +F++ + + DT N L+D + G++
Sbjct: 145 NRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMIL 204
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK--WKPSV 264
+A+ + KG E +V ++ L GY SQ+ +A + + +V+ PSV
Sbjct: 205 EAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQK-------LFNIMVRKGCAPSV 257
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
S + G I A+ + ++ K P
Sbjct: 258 RSYNILIKGHCKSGRIDEAKGLLAEMSHKALTP 290
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 109/251 (43%), Gaps = 3/251 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM + G VVY++++ K + + EM GI+ + TY + L + +
Sbjct: 105 LKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCN 164
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ M + NV D V + + +G K G++ +A + + E+ VN
Sbjct: 165 LGRSNEATSLFKQM-VERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVN 223
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ YN ++ Y + D+ +++ + +K Y +I K ++ A+ + E
Sbjct: 224 T-YNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAE 282
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+AL DT + L+ +C++G + A+ L+ + G + ++ + G +
Sbjct: 283 MSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGH 342
Query: 240 IHKAVEAMKKV 250
+ +A E +K +
Sbjct: 343 LDEAFELLKAM 353
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 21/230 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M L TV Y++++K + + G + L+ EM G+ D TY L
Sbjct: 280 LAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCK 339
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ ++L M+ +PN+ IY + G G L+ A + S +KG
Sbjct: 340 QGHLDEAFELLKAMQESKIEPNI----FIYTILIQGMCNFGKLEAARELF--SNLFVKGI 393
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIWELYKKAV--KVLNNG--YRNVISSLLKLDDLES 172
+ + Y V+++ K G ++ EL++ L N Y +I L+ D +
Sbjct: 394 QPDVVTYTVMISGLLKGGLSNEA---CELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSN 450
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
A ++ EE + D+ L D+ R+ ++ +L H +GR++
Sbjct: 451 AGRLIEEMVGRGFSADSSTFQMLSDLESRDEII----SLFMHGSSQGRKM 496
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 127/292 (43%), Gaps = 16/292 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS---DHEGIDK 69
V YN+++ + G + L+ +M + I + T+ + A+ + + +
Sbjct: 223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYN 282
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILT 128
++ M P+V Y ++ NG GLLD+A M E G N Y ++
Sbjct: 283 VMIQMSVYPDV----FTYGSLINGLCMYGLLDEARQMFYLMERN--GCYPNEVIYTTLIH 336
Query: 129 LYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+ K + +D ++I +E+ +K V Y +I + + A+++F + S+
Sbjct: 337 GFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPP 396
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D R N L+D C NG +EKA + + + + +I++ ++ + G + ++ A +
Sbjct: 397 DIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLF 456
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ + KP+V + + F G I A++ + + + GF+P +
Sbjct: 457 CSLFSK-----GMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNE 503
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 16/197 (8%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G +VY++++ K G ++ + EM E+G YTY + + Y +
Sbjct: 670 GCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLA 729
Query: 68 DKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-Y 123
K+L+ M PNV VIY + +G KVG D+A +++ EE KG + N Y
Sbjct: 730 SKVLSKMLENSCAPNV----VIYTEMIDGLCKVGKTDEAYKLMQMMEE--KGCQPNVVTY 783
Query: 124 NVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE--- 179
++ +G+ GK + L + E + K V YR +I K L+ A + EE
Sbjct: 784 TAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 843
Query: 180 --WESQALCYDTRIPNF 194
W + A Y I F
Sbjct: 844 THWPTHAAGYRKVIEGF 860
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 134/337 (39%), Gaps = 21/337 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +MR V Y+++L + +++ M G + + + AY
Sbjct: 325 LNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCT 384
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIY-ATVGNGYGKVGLLDKALAMLKK---SEEQIKG 116
+ DH K+L M + +V+Y +G+ G L L L + SE G
Sbjct: 385 SGDHSYAYKLLKKMVKCGHTP-GYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATG 443
Query: 117 AKVN----SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172
+N S++ L GKY K V+R E+ + + Y V+ L +E
Sbjct: 444 VVLNKINVSSFTRCLCSAGKYEKAFSVIR--EMIGQGFIPDTSTYSKVLGYLCNASKMEL 501
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A +FEE + L D ++D +C+ GL+E+A N + G +V ++ L
Sbjct: 502 AFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 561
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
Y + ++ A E + +L+ P++ + +A +D G + A E +
Sbjct: 562 AYLKAKKVSYANELFETMLSE-----GCLPNIVTYSALIDGHCKAGQMEKACQIFERMCG 616
Query: 293 KGFIP-TDLQDKLLDNVQNGKSNLETLRELYGNSLAG 328
+P D+ K D+ + + N+ +YG L G
Sbjct: 617 SKDVPDVDMYFKQYDDDNSERPNV----VIYGALLDG 649
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 46/282 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G T Y+S++ Y+K + ++ +M EN + Y +
Sbjct: 700 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 759
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ K++ MME PNV V Y + +G+G++G ++ L +L++ KG
Sbjct: 760 KTDEAYKLMQMMEEKGCQPNV----VTYTAMIDGFGRIGKIETCLELLERMGS--KGVAP 813
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIWEL------------YKKAVKVLN------------ 154
N Y V++ K G D + E Y+K ++ N
Sbjct: 814 NYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDE 873
Query: 155 ----------NGYRNVISSLLKLDDLESAEKIFEEWE--SQALCYDTRIPNFLIDVYCRN 202
+ YR ++ +L+K LE A ++ EE S L + N LI+ C
Sbjct: 874 IGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLA 933
Query: 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
++KA L + KG ++++ L G +NS+I +A+
Sbjct: 934 NKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEAL 975
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 110/253 (43%), Gaps = 3/253 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M GL +Y +L K G + ++ + GI + Y L YA
Sbjct: 260 LQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYAT 319
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ L +M + V+ D I+ + Y K ++D+A+ + K +Q +
Sbjct: 320 EGSLSEMHSFLDLMVGN-GVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIV 378
Query: 121 SAYNVILTLYGKYGKKDD-VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y ++ K G+ DD VL+ ++ + + + +++ L +D E AE++F E
Sbjct: 379 T-YGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFE 437
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
Q + DT N L+ CR G + +A+ L++ G V S+ L G+ +
Sbjct: 438 VLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGR 497
Query: 240 IHKAVEAMKKVLA 252
I +A + + +++
Sbjct: 498 IDEAAKLLDVIVS 510
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 49/245 (20%)
Query: 13 TVVYNSMLKLYYKTGNF-EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
TV+++ +LK E D L+ M E G T D ++Y L + + E ++L
Sbjct: 128 TVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELL 187
Query: 72 TMMEAD------PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
+MM D PNV V Y TV +G K ++D+A + +
Sbjct: 188 SMMADDGDGSHTPNV----VTYTTVIDGLCKAQMVDRAKGVFQ----------------- 226
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ K V+ N+ Y +I L + + ++ +E + L
Sbjct: 227 ------------------HMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGL 268
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN---SQIHK 242
D I L+D C+NG +A N+ + KG + +V + L GY S++H
Sbjct: 269 QPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHS 328
Query: 243 AVEAM 247
++ M
Sbjct: 329 FLDLM 333
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 14/294 (4%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D G+ TV +N+++ + G + L+ M G+ D +Y T + +
Sbjct: 440 DQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGR-- 497
Query: 66 GIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA- 122
ID+ +++ ++ L D V Y T+ +GY K +D A ++ + E +KG +
Sbjct: 498 -IDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFR--EMLMKGLTPDVVT 554
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN IL + G+ + ++ + ++ Y +I+ L K + ++ A K+F
Sbjct: 555 YNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLC 614
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
S+ L D N +I + G E A +L G V+++ +A +N
Sbjct: 615 SKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIA----ENLIKE 670
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++E + ++ +A + P+ L A + + GDI A ++ L++K F
Sbjct: 671 GSLEELDELFSAMEE-NGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNF 723
>gi|326505288|dbj|BAK03031.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529675|dbj|BAK04784.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 597
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 11/241 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G+ YN++++ + G ++++ L+ EM+E + D T T +++Y+ D
Sbjct: 310 MEARGMLPGVATYNAIIRKLCEDGKMKEVNGLLSEMDERKVQADHVTCNTLINSYSKKGD 369
Query: 64 HEGIDKILT-MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
K+ T MME+ + LD Y + +G+ K LD+A K++ ++ GA +
Sbjct: 370 MPSACKVKTRMMES--GLQLDQFTYKALIHGFSKAKQLDEA----KEALFEMMGAGFSPN 423
Query: 123 YNVILTLYGKYGKK---DDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y+V L + K+ D VL I EL K+ + + YR++I L K ++ A+K+
Sbjct: 424 YSVFSWLVDGFYKRNNADAVLLIPDELMKRGLPPDKSVYRSLIRRLCKKRLVDLAQKVLH 483
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
+ + + L D + L G L A + +N K + + + L T Y
Sbjct: 484 QMQGKGLEADCLVYASLAYAQLTAGKLAAASDTLNDMAKKQLSVTPQIYNCLCTSYGDEK 543
Query: 239 Q 239
Q
Sbjct: 544 Q 544
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 9/250 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+A T VYN+ML + K G+ + ++LM M+ G+ D +++ T ++ Y
Sbjct: 174 GVAMNTHVYNAMLHVCLKAGDAARAEALMTRMDATGVPLDLFSFNTAIALYVRKGMQYEA 233
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+ M D V D V + TV +G K G + +A + + A +
Sbjct: 234 MCVRDRMAND-GVEADIVTWNTVIHGMCKEGRMKEA----SQLHRDMVAAGIEPDTVTYT 288
Query: 128 TLYGKYGKKDDVLRIWELYK--KAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQ 183
TL Y + DV L +A +L Y +I L + ++ + E + +
Sbjct: 289 TLVDGYCRAGDVGEAMNLRAVMEARGMLPGVATYNAIIRKLCEDGKMKEVNGLLSEMDER 348
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ D N LI+ Y + G + A + G ++ ++ L G+ + Q+ +A
Sbjct: 349 KVQADHVTCNTLINSYSKKGDMPSACKVKTRMMESGLQLDQFTYKALIHGFSKAKQLDEA 408
Query: 244 VEAMKKVLAA 253
EA+ +++ A
Sbjct: 409 KEALFEMMGA 418
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 29/246 (11%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D L+ +T ++NS++ Y F + SL M+ DRYT+ + L A E
Sbjct: 85 DRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCAS----E 140
Query: 66 GIDKILTMMEADPNV---ALDWVIYATVG--NGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
G K++ M ++ +D IY T N YGK GL+D A + E+ V
Sbjct: 141 G--KMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSER----NVV 194
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S + ++ Y G + R+++L + + +I +K+ D++SAEK F+E
Sbjct: 195 S-WTAMIVGYSSIGNLVEAKRLFDLMPERNVA---SWNAIIGGYMKMGDVKSAEKAFDEM 250
Query: 181 -ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
E + + T +ID Y + G + A NL K E + +W L +GY QN Q
Sbjct: 251 PEKNVVSFTT-----MIDGYAKAGDMLSARNLFQ----KAPERDIIAWSALISGYTQNGQ 301
Query: 240 IHKAVE 245
++AV+
Sbjct: 302 PNEAVK 307
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/348 (20%), Positives = 151/348 (43%), Gaps = 32/348 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M G+ V Y+S++ G + L+ +M E I D +T+ + A+
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+K+ M DP++ V Y+++ NG+ LD+A M + +
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSI----VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V S Y+ ++ + K + D+ + ++ E+ ++ + Y +I L + D + A++I
Sbjct: 395 DVVS-YSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEI 453
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+E S + + N L+D C+NG LEKA + + + E + ++ + G +
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 237 NSQIHK--------AVEAMKKVLAAYQTLVKW---KPSVESLAACLDYFKDEGDIGGAEN 285
++ +++ +K + AY T++ K S E A K++G
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT------ 567
Query: 286 FIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
L + G T ++ +L D + +++ E ++E+ AG+ T+
Sbjct: 568 ----LPNSGCYNTLIRARLRDG--DREASAELIKEMRSCGFAGDASTI 609
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 123/292 (42%), Gaps = 16/292 (5%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+ + ++ +L K F+ + SL +M+ G+ ++ YTY ++ + S +L
Sbjct: 80 SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVL 139
Query: 72 TMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVIL 127
M +PN+ V +++ NGY + +A+A++ + + G + N+ +N ++
Sbjct: 140 GKMMKLGYEPNI----VTLSSLLNGYCHSKRISEAVALV--DQMFVTGYQPNTVTFNTLI 193
Query: 128 -TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
L+ + V I + K + Y V++ L K D + A + + E L
Sbjct: 194 HGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLE 253
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
I +ID C+N ++ A NL + KG +V ++ L + + A
Sbjct: 254 PGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ ++ K P V + +A +D F EG + AE + + + P+
Sbjct: 314 LSDMIER-----KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 28/297 (9%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ Y+SM+ + K + + + + M G + + T+ T + Y A
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409
Query: 63 D-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+G++ + M E + D Y T+ +G+ VG L+ AL +L +E I
Sbjct: 410 RIDDGMELLHEMTET--GLVADTTTYNTLIHGFYLVGDLNAALDLL---QEMISSGLCPD 464
Query: 122 AYNVILTLYGKY--GKKDDVLRIWELYKKAVKVLN-----NG-------YRNVISSLLKL 167
L G GK D L ++++ +K+ K L+ NG Y +IS L+
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
AE+++EE + + DT + +ID C+ L++A + + K +V ++
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 228 YYLATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
L GY + ++ +E + ++A Y TL+ V ++ LD F++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 112/258 (43%), Gaps = 14/258 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEG 66
G + + +N+++ Y + L+HEM E G+ D TY T + + D +
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN------ 120
+D + M+ + + D V T+ +G G L AL M K ++ K +
Sbjct: 450 LDLLQEMISS--GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507
Query: 121 ----SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
YN++++ GK + ++E + + + Y ++I L K L+ A +
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+ S++ + LI+ YC+ G ++ L +G + ++ L G+R
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627
Query: 236 QNSQIHKAVEAMKKVLAA 253
+ I+ A++ ++++++
Sbjct: 628 KVGNINGALDIFQEMISS 645
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 34/297 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++ G+ YNSM+ + +G + + L+ EM E I+ D TY ++A+
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
+++ M + + + Y+++ +G+ K LD A M KG N
Sbjct: 340 KFFEAEELYDEMLPR-GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM--ATKGCSPNLI 396
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+N ++ Y + DD + + E+ + + Y +I + DL +A + +E
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S LC D + L+D C NG L+ A ++
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDA-----------------------------LEM 487
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K ++ KK L A +P V++ + +EG AE E + +G +P
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 27/312 (8%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V + +++ + G + +L+ M E+G+ + TY T + D +L
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLR 243
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME ++ + VIY+ + + K G A + +E Q KG + YN ++ +
Sbjct: 244 KMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLF--TEMQEKGIFPDLFTYNSMIVGFC 301
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ D ++ E+ ++ + Y +I++ +K AE++++E + + +T
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ +ID +C+ L+ AE++ KG ++ ++ L GY +I +E + ++
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421
Query: 251 --------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ- 301
Y TL+ F GD+ A + ++ + G P +
Sbjct: 422 TETGLVADTTTYNTLIHG-------------FYLVGDLNAALDLLQEMISSGLCPDIVTC 468
Query: 302 DKLLDNV-QNGK 312
D LLD + NGK
Sbjct: 469 DTLLDGLCDNGK 480
>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g46580, chloroplastic; Flags: Precursor
gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 711
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 5/211 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M+ + + VVYN++L+ + G SL +EM E G+T + T + Y
Sbjct: 314 LQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGK 373
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A ++ M+A +D+++Y T+ N +GL ++A + +E ++ N
Sbjct: 374 ARWARDALQLWEEMKAK-KWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDN 432
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+Y +L +YG GK + + ++ E+ K V+V G ++ L K ++ +F+
Sbjct: 433 FSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDL 492
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
+ + D R+ L+ V L E +E+
Sbjct: 493 SIKRGVKPDDRLCGCLLSVM---ALCESSED 520
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 18/233 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M GL V Y+++L +Y K+G E++ SL G D + + +
Sbjct: 244 FERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGE 303
Query: 61 ASDHEGIDKILT---MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A D++GI +L M+ PNV V+Y T+ G+ G A ++ + E G
Sbjct: 304 AGDYDGIRYVLQEMKSMDVKPNV----VVYNTLLEAMGRAGKPGLARSLFNEMLE--AGL 357
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL-ESAEK 175
N ++ +YGK D L++WE K ++ N + ++ L E AE+
Sbjct: 358 TPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAER 417
Query: 176 IFEEWESQALCYDTRIPNF----LIDVYCRNGLLEKAENLVNHEKLKGREIHV 224
+F + + C R NF ++++Y G EKA L G +++V
Sbjct: 418 LFNDMKESVQC---RPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNV 467
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/343 (22%), Positives = 147/343 (42%), Gaps = 24/343 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q M+D GL YNS + K G E+ L+ +M E G+ + TY + Y +
Sbjct: 274 FQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCN 333
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
D +DK + + V Y + G + A M+K+ E KG
Sbjct: 334 KGD---LDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMRE--KGMM 388
Query: 119 VNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++ +N+++ Y + G + E+ K ++ Y ++I L K + ++ A+ +
Sbjct: 389 PDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADAL 448
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV---NHEKLKGREIHVKSWYYLATG 233
F + + + L D + N LID +C NG +++A L+ ++ K+ EI ++ L G
Sbjct: 449 FSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEI---TYNTLMQG 505
Query: 234 YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
Y + ++ +A + + ++ KP S + + GD+ A + +
Sbjct: 506 YCREGKVEEARQLLDEMKRR-----GIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTT 560
Query: 294 GFIPTDLQ-DKLLDNV---QNGKSNLETLRELYGNSLAGNEET 332
GF PT L + L+ + Q G+ E L+E+ + ++ T
Sbjct: 561 GFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDST 603
>gi|357153691|ref|XP_003576535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Brachypodium distachyon]
Length = 936
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 124/262 (47%), Gaps = 13/262 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KMR+ + + Y++M+ LY ++G F+K + ++ M ++ + + + +L+AY+
Sbjct: 295 KMRECNV-KCINAYSAMITLYTRSGLFDKSEEVIVLMNDDKVIANLENWLVQLNAYSQQG 353
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
E IL M D V+ + V + T+ GYGKV + KA + S E+ A +
Sbjct: 354 KMEEAKLILQSM-VDEGVSPNVVAFNTLITGYGKVSDMQKAKEVF-NSLEKAGLAPDETT 411
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWE 181
Y ++ +G+ K D+ L + K++ N + + +I+ + + D+ ESA +I ++
Sbjct: 412 YRSMIEGFGRADKYDEALLYYRKLKESGFQPNASNFYTMINLIARHDENESAAEILKDMM 471
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ A C + I L+ Y + G + K ++ K S L T + QNS +
Sbjct: 472 A-AGCQCSSIITILVRAYAQVGGMNKVLPILQSCFYKKILFDATSCSILVTLFVQNSLLE 530
Query: 242 KAVEAMKKVLAAYQTLVKWKPS 263
+A+ +++ KWK S
Sbjct: 531 EALCVLRE--------KKWKDS 544
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+QKM+D G + YN ML Y K G E+ +++ +M +D YTY L+ Y
Sbjct: 781 VQKMQDAGFPVSLEAYNCMLNAYGKAGQLEEFAAVLQKMRRAKCDFDHYTYNIMLNIYGR 840
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
EG+ +L+ +++ V D Y T+ YG G+ + A+ +++ E ++KG +N
Sbjct: 841 KGWIEGVAYVLSELKSR-GVEPDLYSYNTLIKAYGIAGMPEDAVKLMQ--EMRLKG--IN 895
Query: 121 SAYNVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYR 158
+ L + ++ L W L+ K V G R
Sbjct: 896 ADRITYTNLIAALQRNENFLEAVKWSLWMKQTGVGGRGAR 935
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YN+++ Y +G+F + + +M++ G Y L+AY A E +L
Sbjct: 759 ISYNTIIAAYAHSGDFRSMTYFVQKMQDAGFPVSLEAYNCMLNAYGKAGQLEEFAAVLQK 818
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGK 132
M D Y + N YG+ G ++ +L SE + +G + + +YN ++ YG
Sbjct: 819 MR-RAKCDFDHYTYNIMLNIYGRKGWIEGVAYVL--SELKSRGVEPDLYSYNTLIKAYGI 875
Query: 133 YGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
G +D +++ E+ K + Y N+I++L + ++ A K
Sbjct: 876 AGMPEDAVKLMQEMRLKGINADRITYTNLIAALQRNENFLEAVK 919
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 87/200 (43%), Gaps = 8/200 (4%)
Query: 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW 84
+ G+++ S+ +EM ++ + + C+ + ++ + + ++ V LD
Sbjct: 560 EAGSYDAAVSIYNEMPKSKLHPNLRISCSMIDVFSTMERFTDAETLYLELKTSACV-LDM 618
Query: 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG----KKDDVL 140
+ Y+ + Y K G + A ++L+ E+Q + + +L Y K G D
Sbjct: 619 IAYSVIVRMYTKAGRPEDACSVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLTDTYY 678
Query: 141 RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
I + + + +NN N + +D+L +IF+E T N L+D+Y
Sbjct: 679 WILKSQVECDEAMNNCIINCCGPAIPVDEL---TRIFDEMIQLGHMASTITLNVLLDIYG 735
Query: 201 RNGLLEKAENLVNHEKLKGR 220
+ GL +A+ + N + +G+
Sbjct: 736 KAGLFNRAQKVFNMARKQGQ 755
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/273 (18%), Positives = 107/273 (39%), Gaps = 38/273 (13%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEME-ENGITYDRYTYCTRLSAYADASDHEGIDK--- 69
+ Y+ ++++Y K G E S++ +ME + I D+Y + L Y E +
Sbjct: 619 IAYSVIVRMYTKAGRPEDACSVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLTDTYY 678
Query: 70 --ILTMMEAD------------PNVALD-----------------WVIYATVGNGYGKVG 98
+ + +E D P + +D + + + YGK G
Sbjct: 679 WILKSQVECDEAMNNCIINCCGPAIPVDELTRIFDEMIQLGHMASTITLNVLLDIYGKAG 738
Query: 99 LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGY 157
L ++A + + +Q + + +YN I+ Y G + + ++ V Y
Sbjct: 739 LFNRAQKVFNMARKQGQADII--SYNTIIAAYAHSGDFRSMTYFVQKMQDAGFPVSLEAY 796
Query: 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
++++ K LE + ++ +D N ++++Y R G +E +++ K
Sbjct: 797 NCMLNAYGKAGQLEEFAAVLQKMRRAKCDFDHYTYNIMLNIYGRKGWIEGVAYVLSELKS 856
Query: 218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+G E + S+ L Y AV+ M+++
Sbjct: 857 RGVEPDLYSYNTLIKAYGIAGMPEDAVKLMQEM 889
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 115/261 (44%), Gaps = 20/261 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEG 66
G + +N+++ Y + L+HEM E G+ D TY T + + D +
Sbjct: 384 GCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAA 443
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK---KSEEQIKGAKVNSA- 122
+D M+ + V D V T+ +G G L AL M K KS+ + ++ +
Sbjct: 444 LDLSQQMISS--GVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGV 501
Query: 123 ------YNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNNG--YRNVISSLLKLDDLES 172
YN++++ GK L ELYK+ ++ N Y ++I+ L K L+
Sbjct: 502 EPDVQTYNILISGLINEGK---FLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDE 558
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A ++F+ S++ D N L+ YC+ G ++ L +G ++ L
Sbjct: 559 ATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIH 618
Query: 233 GYRQNSQIHKAVEAMKKVLAA 253
G+R+ I+ A++ ++++++
Sbjct: 619 GFRKVGNINGALDIFQEMISS 639
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 128/296 (43%), Gaps = 26/296 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ YNSM+ + K + + + + M G + D +T+ T + Y A
Sbjct: 344 EMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAK 403
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ ++L M VA D Y T+ +G+ VG L+ AL + S++ I
Sbjct: 404 RIDDGTELLHEMTETGLVA-DTTTYNTLIHGFCLVGDLNAALDL---SQQMISSGVCPDI 459
Query: 122 -AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NG-------YRNVISSLLKLD 168
N +L GK D L +++ +K+ L+ NG Y +IS L+
Sbjct: 460 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEG 519
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
AE++++E + + +T + +I+ C+ L++A + + K V ++
Sbjct: 520 KFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFN 579
Query: 229 YLATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
L +GY + ++ +E + ++A Y TL+ V ++ LD F++
Sbjct: 580 TLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQE 635
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 139/332 (41%), Gaps = 21/332 (6%)
Query: 9 LARTTVV-YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
+ R VV + +++ + G + +L+ M E+G+ ++ TY T + D
Sbjct: 173 MCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSA 232
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVI 126
+L ME ++ + VIY+ + +G K G A + +E Q KG + YN +
Sbjct: 233 LNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLY--TEMQEKGIFPDLFTYNCM 290
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ + G+ + R+ E+ ++ + Y +I++ +K AE++++E + +
Sbjct: 291 IDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGI 350
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+T N +ID +C+ L+ AE++ KG V ++ L GY +I E
Sbjct: 351 IPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTE 410
Query: 246 AMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDE------GDIGGAENFIELLN 291
+ ++ Y TL+ V L A LD + DI ++ L
Sbjct: 411 LLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLC 470
Query: 292 DKGFIPTDLQDKLLDNVQNGKSNLETLRELYG 323
D G + L+ + +Q K +L+ R G
Sbjct: 471 DNGKLKDALE--MFKAMQKSKMDLDASRPFNG 500
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 134/336 (39%), Gaps = 22/336 (6%)
Query: 1 MQKMRDLG-LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
++KM ++ + V+Y++++ +K G +L EM+E GI D +TY + +
Sbjct: 236 LRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFC 295
Query: 60 DASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG 116
+ ++L M + +PNV V Y+ + N Y K +A + E +G
Sbjct: 296 SSGRWSEAQRLLQEMLERKINPNV----VTYSALINAYVKERKFFEAEELY--DEMLPRG 349
Query: 117 AKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN---GYRNVISSLLKLDDLES 172
N+ YN ++ + K + D ++ Y A K + + +I ++
Sbjct: 350 IIPNTITYNSMIDGFCKQNRLDAAEHMF--YVMATKGCSPDVFTFNTLIDGYCGAKRIDD 407
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
++ E L DT N LI +C G L A +L G + + L
Sbjct: 408 GTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLD 467
Query: 233 GYRQNSQIHKAVEAMKKV------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
G N ++ A+E K + L A + +P V++ + +EG AE
Sbjct: 468 GLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEEL 527
Query: 287 IELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY 322
+ + +G +P + + N +S L+ +++
Sbjct: 528 YKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMF 563
>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Brachypodium distachyon]
Length = 858
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 6/212 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q +RD L +NS+L + G+ E +L EM GI D YTY T + A
Sbjct: 294 QMLRDR-LCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKC 352
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E ++L MEA NV + V Y+T+ +GY K+ D+AL + +K + G +++
Sbjct: 353 GNIELAMQVLLDMEAK-NVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSL--GIQLDR 409
Query: 122 -AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN +L +Y K GK ++ + E+ ++ Y ++I+ K L+ + ++
Sbjct: 410 VCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQD 469
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ + + LID+Y + G+ A N+
Sbjct: 470 MRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNV 501
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 3/212 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M LG+ R YN+ + K GN E ++ +ME + + TY T + Y+
Sbjct: 329 EMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLE 388
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
++ K+ M++ + LD V Y TV Y K G + +A++ E K
Sbjct: 389 KYDEALKLYEKMKS-LGIQLDRVCYNTVLAIYVKAGKYGE-IAIVCDEMEDSGIEKDTVT 446
Query: 123 YNVILTLYGKYGKKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN ++ YGK G+ D V + ++ ++ V Y +I K A ++ +++
Sbjct: 447 YNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFK 506
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
L D + + ID +NGL+E A +L+N
Sbjct: 507 ESGLKPDVVLFSSFIDTLAKNGLVEWALSLLN 538
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G+ + TV YNS++ Y K G + + L+ +M G+ TY T + Y+ A
Sbjct: 434 EMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAG 493
Query: 63 DH-EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
H + + L E+ + D V++++ + K GL++ AL++L E G K N
Sbjct: 494 MHGDAFNVYLDFKES--GLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEM--GIKPNV 549
Query: 122 A-YNVILTLYGK 132
YN I+ +GK
Sbjct: 550 VTYNTIIDAFGK 561
>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Brachypodium distachyon]
Length = 857
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 17/274 (6%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE-GIDKI 70
T V YN ++ Y + + + EMEE G DR TYCT + +A A E +D
Sbjct: 398 TVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLY 457
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTL 129
M E ++ D Y+ + N GK G L A + + E G N YN+I+ L
Sbjct: 458 GRMQEV--GLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIE--NGCTPNLVTYNIIIAL 513
Query: 130 YGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
K D+V++++ ++ + Y V+ L L+ AE +F E + D
Sbjct: 514 QAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR-RDWAPD 572
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
+ L+D++ + G ++KA + G + +V + L + + + ++ A ++
Sbjct: 573 EPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQ 632
Query: 249 KVLAAYQTLVKWKPSVES----LAACLDYFKDEG 278
+LA Q LV PS+++ L+ C D G
Sbjct: 633 NMLA--QGLV---PSLQTYTLLLSCCTDAHAQMG 661
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 8/218 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+++GL+ T Y++M+ K G L EM ENG T + TY ++ A A
Sbjct: 459 RMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKAR 518
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+++ + K+ M+ D + Y+ V G G LD+A A+ E + A
Sbjct: 519 NYDNVVKLYRDMQVA-GFRPDKITYSIVMEVLGHCGHLDEAEAVFI--EMRRDWAPDEPV 575
Query: 123 YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y +++ L+GK G D L + + + ++ +++S+ LK++ + A + +
Sbjct: 576 YGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNML 635
Query: 182 SQALCYDTRIPNFLI----DVYCRNGLLEKAENLVNHE 215
+Q L + L+ D + + GL + + H
Sbjct: 636 AQGLVPSLQTYTLLLSCCTDAHAQMGLCCQLMAITGHP 673
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 120/291 (41%), Gaps = 54/291 (18%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY--------- 51
Q+M D G+ YN ++ Y TG ++++ ++ EM +G+ D TY
Sbjct: 219 FQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCK 278
Query: 52 ---CTRLSAYADASDHEGIDKILTMMEADPNVALDWVI---YAT--------------VG 91
C + D+ +GI P+VA+ ++ YAT VG
Sbjct: 279 NGRCREARLFFDSMFRKGI---------KPDVAIYAILLHGYATKGALSEMHSFLDLMVG 329
Query: 92 NG--------------YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137
NG Y K ++++A+ + K +Q V S + ++ K G+ D
Sbjct: 330 NGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVS-FGALIDALCKLGRVD 388
Query: 138 D-VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLI 196
D VL+ ++ + V + +++ L + E AE++F E Q +C D N L+
Sbjct: 389 DAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLM 448
Query: 197 DVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
C G + +A+ L++ G +V S+ L G+ +I +A + +
Sbjct: 449 CNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLL 499
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 127/327 (38%), Gaps = 35/327 (10%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G V YN+++ +++ G EK +L EM + GI + TY T + A
Sbjct: 151 RMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQ 210
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
+ + M D V D Y + +GY G + + ML+ E G + +
Sbjct: 211 VVDRAKGVFQQM-IDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLE--EMSTHGLEPDCI 267
Query: 122 AYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y ++L K G+ ++ L +++K +K Y ++ L +
Sbjct: 268 TYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLM 327
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + RI N + Y + ++E+A ++ N + +G V S+ L + ++
Sbjct: 328 VGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRV 387
Query: 241 HKAV--------EAMKKVLAAYQTLV-------KWKPSVESLAACLD--------YFK-- 275
AV E + + + +LV KW+ + E LD +F
Sbjct: 388 DDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTL 447
Query: 276 -----DEGDIGGAENFIELLNDKGFIP 297
+EG + A+ I+L+ G P
Sbjct: 448 MCNLCNEGRVMEAQRLIDLMIRVGVRP 474
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 5/243 (2%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
+A Y+ ++ + + G E + + + G + L DA +
Sbjct: 86 VAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEAT 145
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILT 128
IL + ++ D V Y TV NG+ + G ++KA + + +Q V + Y ++
Sbjct: 146 DILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVT-YTTVID 204
Query: 129 LYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
K D ++ ++ + VK N Y +I L + ++ EE + L
Sbjct: 205 GLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEP 264
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN---SQIHKAV 244
D L+D C+NG +A + KG + V + L GY S++H +
Sbjct: 265 DCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFL 324
Query: 245 EAM 247
+ M
Sbjct: 325 DLM 327
>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
Length = 384
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M +G A+ YN + +Y K G E ++ L+ EM+ G+ D+ TY T L YA S
Sbjct: 148 EMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKS 207
Query: 63 DHEGIDKILT-MMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+IL M EA PN+ W + + ++++A + E +K V
Sbjct: 208 YFVKAHEILREMTEAGYRPNI---WTYNIMLSSARK-----EQSVAEATQLFENLKSKGV 259
Query: 120 NS---AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
Y+ +L+LYG++G + ++W E+ + Y +I S + A
Sbjct: 260 VPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALA 319
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
F++ + DT+I L+D Y + G +AE L
Sbjct: 320 CFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELL 355
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/335 (20%), Positives = 137/335 (40%), Gaps = 47/335 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M++ G ++YN ++ +G E + ++ +M+ + ++ + TY + YA+
Sbjct: 41 LEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYAN 100
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ K+ M+ W Y + GYG+ GL +AL + + + + AK
Sbjct: 101 TGRLQDCRKLFQEMKDKGESPNSWT-YNALIQGYGRKGLFKEALELYDEM-DGVGCAKDV 158
Query: 121 SAYNVILTLYGKYGKKDDVLRIWE-------------------------LYKKAVKVLNN 155
YN+ + +YGK G +D+ R+ + + KA ++L
Sbjct: 159 HTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILRE 218
Query: 156 ----GYRN-------VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
GYR ++SS K + A ++FE +S+ + + + ++ +Y R+GL
Sbjct: 219 MTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGL 278
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK--P 262
+A L + G + ++ L Y + +A LA +Q + K P
Sbjct: 279 YTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEA-------LACFQDMRKSGIVP 331
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ A +D + G AE + +GF+P
Sbjct: 332 DTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVP 366
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 121/298 (40%), Gaps = 49/298 (16%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLD---SLMHEMEENGITYDRYTYCTRLSAYAD 60
M+D G T V Y ++ Y + + KLD L+ M+E+G D Y ++ +
Sbjct: 9 MKD-GCEATVVTYTVIIHGYLRQKS--KLDHALRLLEVMKESGKKPDEILYNCLVNGLVN 65
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E +KIL M+ D V+ + V Y + Y G L + ++ ++ KG N
Sbjct: 66 SGRLEAAEKILDDMKRD-KVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKD--KGESPN 122
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S YN ++ YG+ G L+K+A+ ++++E
Sbjct: 123 SWTYNALIQGYGRKG----------LFKEAL------------------------ELYDE 148
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ D N I +Y + GLLE E L++ KG ++ L Y + S
Sbjct: 149 MDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSY 208
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KA E ++++ A ++P++ + L + E + A E L KG +P
Sbjct: 209 FVKAHEILREMTEA-----GYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVP 261
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G+ V YN++L +Y K F K ++ EM E G + +TY LS+
Sbjct: 181 LDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSS--- 237
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
A + + + + E V + V Y+ + + YG+ GL +A K +E I+
Sbjct: 238 ARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEA---AKLWDEMIEAGC 294
Query: 119 VNS--AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEK 175
+ AY+ ++ YG +G + L ++ +K+ V + Y ++ + K AE
Sbjct: 295 IPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAEL 354
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
++ E + D L+ + G L
Sbjct: 355 LYFEMTKEGFVPDGITYGILVRAFANAGRL 384
>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
Length = 482
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 24/246 (9%)
Query: 1 MQKMRDLGLARTTVV-YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM+ + + +V YN +L+ + + G+ ++LD L +++E+ ++ D YTY + AY
Sbjct: 170 FEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYG 229
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ +L M+++ D + + + + YG+ DK + + KS + K
Sbjct: 230 KNGMITEMESVLVRMKSN-QCRPDVITFNILIDSYGRKQAFDK-MEQVFKSLLRSKEKPT 287
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN----GYRN-------VISSLLKLD 168
+ +N ++T YGK L +KA VL+ G++ +I D
Sbjct: 288 HPTFNSMITNYGKA----------RLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCD 337
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
+ A +IF+E S N ++D YC NGL +A+ L++ KG ++
Sbjct: 338 CVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYK 397
Query: 229 YLATGY 234
L Y
Sbjct: 398 LLYKAY 403
>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
Length = 769
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 44/278 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G R V +NSM+ Y K G+ +L +EM + D ++ T +S Y ASD +
Sbjct: 82 GFERNVVSWNSMMICYIKAGDVCSARALFNEMPDK----DLVSWNTMISGYTQASDMKES 137
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+K+ M DP D V + + G+ + G + A + E + ++N ++
Sbjct: 138 EKLFWEM-PDP----DTVSWNLIIQGFMQKGEAEHARGFFDRMPE-----RGTISWNTMI 187
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL----KLDDLESAEKIFEEWESQ 183
+ Y K G ++ L+ K ++V R+ SS+L + L +I + E +
Sbjct: 188 SGYEKNGNYISSVK---LFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVE-K 243
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK----SWYYLATGYRQNSQ 239
+ DT I N LI +Y R G L AE + +++H K SW L Y + +
Sbjct: 244 SFVPDTAISNALITMYSRCGALNDAEAIF-------KQMHTKKDLVSWNALIGCYEHHGR 296
Query: 240 IHKAVEAMK-----KVLAAYQTLVKWKPSVESLAACLD 272
KA++ K KV+ + T V L+AC++
Sbjct: 297 ATKALQLFKEMRRAKVMPTHITFVS------LLSACVN 328
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 50/249 (20%)
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYK 147
+T+ +G+ K G+L +A +L K K AYN ++ YG+ G+ D R++++
Sbjct: 10 STMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIP 69
Query: 148 KAVKVLN----NGY-RNVIS------SLLKLDDLESAEKIFEE--------W-------- 180
K N G+ RNV+S +K D+ SA +F E W
Sbjct: 70 KGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYT 129
Query: 181 ------ESQALCYDTRIP-----NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
ES+ L ++ P N +I + + G E A + +G SW
Sbjct: 130 QASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERG----TISWNT 185
Query: 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIG-GAENFIE 288
+ +GY +N +V+ K+L + P + ++ L +G GA+ I
Sbjct: 186 MISGYEKNGNYISSVKLFSKMLEVGEI-----PDRHTFSSVLAACASIPMLGLGAQ--IH 238
Query: 289 LLNDKGFIP 297
L +K F+P
Sbjct: 239 QLVEKSFVP 247
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD-------ASD 63
R T+ +N+M+ Y K GN+ L +M E G DR+T+ + L+A A A
Sbjct: 178 RGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQI 237
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
H+ ++K P+ A+ + Y + G L+ A A+ K Q+ K ++
Sbjct: 238 HQLVEKSFV-----PDTAISNALITM----YSRCGALNDAEAIFK----QMHTKKDLVSW 284
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N ++ Y +G+ L+++ E+ + V + + +++S+ + + +F+
Sbjct: 285 NALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFD---- 340
Query: 183 QALCYD----TRIPNF--LIDVYCRNGLLEKAENLVN 213
+ ++ RI ++ L+++ R+G L+ A ++N
Sbjct: 341 -TMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVIN 376
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 127/320 (39%), Gaps = 41/320 (12%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V Y S+++ K E+ + +M G D YTY + A + K L
Sbjct: 12 VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ---------------IKGAK 118
M A+ N+ + V Y + +G K G +D+A+A+L K ++ K +
Sbjct: 72 M-ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAER 130
Query: 119 VNSAYNV------------------ILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN 159
+ AY++ ++T + K K DD LR++E L + + Y
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190
Query: 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLK 218
+I L K L+ A +F C + N LI +CR G +++A NL+
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250
Query: 219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG 278
G V ++ L G+ + +++ A + + ++ T P V + + +D E
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQM-----TRKGLTPDVVTFTSLMDGLCREN 305
Query: 279 DIGGAENFIELLNDKGFIPT 298
+ A + + + K PT
Sbjct: 306 RLSDAVHILGEMRRKSCSPT 325
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 115/271 (42%), Gaps = 7/271 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KMR + T V YNS++ K + L+ EM +G D +TY T ++ +
Sbjct: 104 LSKMRKKCVP-TAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ++ + A D V Y+ + +G K G L +A+ + + +
Sbjct: 163 SKKSDDALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNT 221
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKK---AVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN +++ + + GK D+ + + E + + V+ Y +++ KL L+ A +
Sbjct: 222 VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVT--YTTLMNGFCKLARLDDAYDLL 279
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ + L D L+D CR L A +++ + K V ++ + GY +
Sbjct: 280 NQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRA 339
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268
+Q+ +A + M + + +V + + L
Sbjct: 340 NQLEEARKFMLEEMDCPPNVVSFNIMIRGLC 370
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 3/196 (1%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
TV YNS++ + + G ++ +L+ M E G + D TY T ++ + + + +L
Sbjct: 221 TVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLN 280
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
M + D V + ++ +G + L A+ +L + + V + YN IL Y +
Sbjct: 281 QM-TRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT-YNTILDGYCR 338
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ ++ R + L + + +I L K++ A ++ EE + D +
Sbjct: 339 ANQLEEA-RKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397
Query: 193 NFLIDVYCRNGLLEKA 208
+ID CR +++A
Sbjct: 398 TTVIDGLCREKKVDEA 413
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 107/255 (41%), Gaps = 22/255 (8%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G + V Y +++ + K + L+++M G+T D T+ + +
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ IL M P V Y T+ +GY + L++A + E++
Sbjct: 304 ENRLSDAVHILGEMRRKSCSPTV----YTYNTILDGYCRANQLEEARKFML---EEMDCP 356
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNVISSLLKLDDLESA 173
++N+++ K + + + EL ++A + N Y VI L + ++ A
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAM---ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEA 413
Query: 174 EKIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
+++ + + C I + L+ C G+L++A + KG ++ ++ L
Sbjct: 414 CRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIE----KGCVPNIGTYNLLID 469
Query: 233 GYRQNSQIHKAVEAM 247
+R+ ++ A E +
Sbjct: 470 AFRKANRDEDARELL 484
>gi|242078465|ref|XP_002444001.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
gi|241940351|gb|EES13496.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
Length = 824
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 5/245 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QK RDLGL V+YN + Y K GN + L++EM G+ D+ Y ++ Y
Sbjct: 392 FQKFRDLGLHLDGVLYNITMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCL 451
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E ++ M N+ D V Y + +GY + G + K +L+ +Q G + N
Sbjct: 452 KGETENAWQVFEQM-LKANIKPDVVTYNILASGYSRNGAVIKVYDLLEHMVDQ--GLEPN 508
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y V + + + G + ++ L +K + + Y +++ L + A +F
Sbjct: 509 SLTYGVAIACFCREGNLSEAEVLFNILEEKGIDNIEVLYSSMVCGYLYSGWTDHAYTLFL 568
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
Q D + LI+ C + +E+A + + K V S+ L + Y Q
Sbjct: 569 RVAKQGNMVDNLSCSKLINSLCIDKKVEEASTVCSMMLEKNAVPDVISYSKLISAYCQKR 628
Query: 239 QIHKA 243
+H A
Sbjct: 629 DMHNA 633
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMMEADPNVALDWVIYA 88
E+ ++ M E D +Y +SAY D H L M++ + D ++Y
Sbjct: 596 EEASTVCSMMLEKNAVPDVISYSKLISAYCQKRDMHNAHLWFLDMVDRGLS---DVIVYT 652
Query: 89 TVGNGYGKVGLLDKALAM-LKKSEEQIKGAKVNSAYNVILTLYGK---YGKKDDVLRIWE 144
+ NGY KVG L +A + ++ IK V AY V+L + K + + + W
Sbjct: 653 VLMNGYCKVGRLQEACDLFVQMINLGIKPDVV--AYTVLLDGHIKEALHQGWQGIAKEWR 710
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
++ L ++ ++SS+ + E E CY LID +C+
Sbjct: 711 SFR-----LRTKHKTLLSSMKDM-----------EIEPDVTCY-----TVLIDGHCKTEY 749
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
L++A L + KG V ++ L GY +I KA + ++++
Sbjct: 750 LDEARGLFDEMLAKGLTPDVYAYTALINGYCSQGEIAKAEDLLQEM 795
>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Vitis vinifera]
Length = 538
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+ M+ + T V +N +++++ + GN EK++ +M+ G+ + TYC+ +SAY+
Sbjct: 328 MEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSK 387
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAML------KKSEEQI 114
A + +D IL +E + +V LD + V + YG+ G +++ + K + I
Sbjct: 388 AGYLKKVDSILRQIE-NSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNI 446
Query: 115 KGAKVNSAYN 124
A + AYN
Sbjct: 447 TFATMIQAYN 456
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 108/214 (50%), Gaps = 10/214 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITY-DRYTYCTRLSAYADA 61
+M LG+ +TV YN+++ Y K FE ++S + EM E+G D +T + + AY ++
Sbjct: 224 EMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNS 283
Query: 62 SDHEGIDKI---LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
E ++K +M P++ + + YGK + +K +++++ +++
Sbjct: 284 GQIEKMEKWYDEFQLMGIRPDIK----TFNILIRSYGKACMYEKMVSVMEFMKKRFYSPT 339
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ + +N+++ ++G+ G + + + ++ + VK + Y +++S+ K L+ + I
Sbjct: 340 IVT-FNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSIL 398
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ E+ + DT N ++ Y + G +E+ L
Sbjct: 399 RQIENSDVTLDTPFFNCVLSAYGQAGDVERMGEL 432
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 7/217 (3%)
Query: 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW-E 144
+Y + + YG G LDKA ++ + Y++++ G+ D + RI+ E
Sbjct: 165 VYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTE 224
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNG 203
+ ++ Y +I K D E E E C D N I Y +G
Sbjct: 225 MSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSG 284
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
+EK E + +L G +K++ L Y + K V M+ + + + P+
Sbjct: 285 QIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRF-----YSPT 339
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
+ + ++ F G+I E F + +G P +
Sbjct: 340 IVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSI 376
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 119/277 (42%), Gaps = 15/277 (5%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y+ ++K G F+ ++ + EM GI TY T + Y A E ++ LT M
Sbjct: 201 TYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEM 260
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKGAKVN-SAYNVILTLYGK 132
D + YG G ++K M K +E Q+ G + + +N+++ YGK
Sbjct: 261 IESGTCLPDIFTLNSFIWAYGNSGQIEK---MEKWYDEFQLMGIRPDIKTFNILIRSYGK 317
Query: 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL-KLDDLESAEKIFEEWESQALCYDTRI 191
+ ++ + E KK N++ + ++ ++E E+ F + + Q + ++
Sbjct: 318 ACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSIT 377
Query: 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEAMKK 249
L+ Y + G L+K ++++ +++ ++ + + ++ + + Y Q + + E
Sbjct: 378 YCSLVSAYSKAGYLKKVDSIL--RQIENSDVTLDTPFFNCVLSAYGQAGDVERMGE---- 431
Query: 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286
L K KP + A + + +G I A+N
Sbjct: 432 -LFLVMKERKCKPDNITFATMIQAYNAQGMIEAAQNL 467
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 132/314 (42%), Gaps = 34/314 (10%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
+ GLA T++YN +L + + ++++ M GI D T+ + A A H+
Sbjct: 151 EFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKA--HQ 208
Query: 66 GIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI---------- 114
IL M E + D + T+ G+ + G +D A + +EQ+
Sbjct: 209 IRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAF----RVKEQMLDAGCPVTNV 264
Query: 115 ----------KGAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISS 163
K ++ A + I + + GK + ++ E+ K + Y +I S
Sbjct: 265 TVNVLVHGFCKEGRIEEALSFIDEMSNE-GKHTMAIELYNEMKNKGCQPDEFTYNMLIDS 323
Query: 164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
L L+ A + E E + N LID +C+N +E+AE + + +++G +
Sbjct: 324 LCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRN 383
Query: 224 VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283
++ L G ++ ++ +A + M +++ + KP + + L YF EGDI A
Sbjct: 384 SVTYNTLIDGLCKSRRVQEAAQLMDQMI-----MEGLKPDKFTYNSMLTYFCREGDIQKA 438
Query: 284 ENFIELLNDKGFIP 297
+ ++ + G P
Sbjct: 439 ADIVQTMTSNGCEP 452
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 4/142 (2%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M GL+R +V YN+++ K+ ++ LM +M G+ D++TY + L+ +
Sbjct: 374 QMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREG 433
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D + I+ M ++ D V Y T+ G K G ++ A +L+ Q+KG +
Sbjct: 434 DIQKAADIVQTMTSN-GCEPDIVTYGTLIGGLCKAGRVEVASRLLRSI--QLKGMVLTPH 490
Query: 122 AYNVILTLYGKYGKKDDVLRIW 143
AYN ++ K + + +R++
Sbjct: 491 AYNPVIQALFKRKRTKEAMRLF 512
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 16/218 (7%)
Query: 88 ATVGNGYGKVGLLDK---------ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDD 138
AT+ + + LLD AL +L + +Q +S Y IL GK G +
Sbjct: 46 ATLSSNFTPAQLLDTLRRQNDETAALRLLSWASKQPNFRPNSSIYEEILRKLGKVGSFNS 105
Query: 139 VLRIWELYKKAVKVLNNGYRNV-ISSLLKLDDLESAEKIFEEWESQ-ALCYDTRIPNFLI 196
+ I + K ++ G + I S K + E I E E + L DT + NFL+
Sbjct: 106 MKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYNFLL 165
Query: 197 DVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQT 256
+V L+ EN+ + KG + V ++ L + QI A+ M++ +++Y
Sbjct: 166 NVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEE-MSSYGL 224
Query: 257 LVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
+ P ++ + F +EG++ GA E + D G
Sbjct: 225 V----PDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAG 258
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 7/239 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+A YN ++K+ K FEK + M + G D ++Y T ++ A A +
Sbjct: 144 GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGK---L 200
Query: 68 DKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
D L + + ++ VA D Y + +G+ K A+ + + E +N+
Sbjct: 201 DDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNI 260
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQA 184
+++ K G+ DD L+IWE K+ + + Y ++I L +++ AE +F E + +
Sbjct: 261 MISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERK 320
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
D N ++ +CR G ++++ L + K +++ S+ L G +N +I +A
Sbjct: 321 ASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEA 378
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 108/283 (38%), Gaps = 44/283 (15%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y+S++ GN +K +S+ +E++E + D TY T L
Sbjct: 293 YSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLG------------------- 333
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
G+ + G + ++L + + E K + +YN+++ + GK
Sbjct: 334 -----------------GFCRCGKIKESLELWRIMEH--KNSVNIVSYNILIKGLLENGK 374
Query: 136 KDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
D+ IW L K Y I L + A + +E ES D
Sbjct: 375 IDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYAS 434
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
+ID C+ LE+A NLV G E++ L G ++S++ +A ++++
Sbjct: 435 IIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKN- 493
Query: 255 QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+P+V S + G G A F++ + + G+ P
Sbjct: 494 ----GCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKP 532
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 108/280 (38%), Gaps = 40/280 (14%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH--- 64
G Y++++ K G + L EM E G+ D Y + + DH
Sbjct: 179 GFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTA 238
Query: 65 -EGIDKILTMMEADPNVAL-------------------------------DWVIYATVGN 92
E D++L PNV D Y+++ +
Sbjct: 239 MELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIH 298
Query: 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWEL--YKKAV 150
G G +DKA ++ + +E+ V + YN +L + + GK + L +W + +K +V
Sbjct: 299 GLCDAGNVDKAESVFNELDERKASIDVVT-YNTMLGGFCRCGKIKESLELWRIMEHKNSV 357
Query: 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
+++ Y +I LL+ ++ A I+ ++ D I C NG + KA
Sbjct: 358 NIVS--YNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALG 415
Query: 211 LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
++ + G + V ++ + + ++ +A +K++
Sbjct: 416 VMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEM 455
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 7/199 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G T V YN ++ K G F + + + EM ENG D TY L
Sbjct: 487 LREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLC- 545
Query: 61 ASDHEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
ID L + + D +++ + +G VG LD A+ ++ E + A
Sbjct: 546 --RDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTAN 603
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ + YN ++ + K G + IW +YK ++ Y ++ L + A + F
Sbjct: 604 LVT-YNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFF 662
Query: 178 EEWESQALCYDTRIPNFLI 196
++ + + N L+
Sbjct: 663 DDARNHGIFPTVYTWNILV 681
>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
Length = 1152
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 103/252 (40%), Gaps = 9/252 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ M + G+ T + +N+ML +K G+ E++D + EM+ I + TY ++ ++
Sbjct: 264 ETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKN 323
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA--KV 119
E + M A+ + + GY K GL D A + ++E +
Sbjct: 324 GKMEEARRFHGDMRRS-GFAVTPYSFNPLIEGYCKQGLFDDAWGV---TDEMLNAGIYPT 379
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
S YN+ + +G+ DD EL Y ++ +K+ A +F++
Sbjct: 380 TSTYNIYICALCDFGRIDDA---RELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDD 436
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + N LID C +G LE A+ L + V ++ L G+ +N
Sbjct: 437 LRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGN 496
Query: 240 IHKAVEAMKKVL 251
+ A E ++L
Sbjct: 497 LSMATEVYDEML 508
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
+ Y +++K + K GN + EM GI D Y Y TR D + ++
Sbjct: 481 VITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHE 540
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
M A + A D IY +G KVG L KA+ +K
Sbjct: 541 EMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRK 577
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 28/297 (9%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ Y+SM+ + K + + + + M G + + T+ T + Y A
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409
Query: 63 D-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+G++ + M E + D Y T+ +G+ VG L+ AL +L +E I
Sbjct: 410 RIDDGMELLHEMTET--GLVADTTTYNTLIHGFYLVGDLNAALDLL---QEMISSGLCPD 464
Query: 122 AYNVILTLYGKY--GKKDDVLRIWELYKKAVKVLN-----NG-------YRNVISSLLKL 167
L G GK D L ++++ +K+ K L+ NG Y +IS L+
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
AE+++EE + + DT + +ID C+ L++A + + K +V ++
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 228 YYLATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
L GY + ++ +E + ++A Y TL+ V ++ LD F++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 112/258 (43%), Gaps = 14/258 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEG 66
G + + +N+++ Y + L+HEM E G+ D TY T + + D +
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN------ 120
+D + M+ + + D V T+ +G G L AL M K ++ K +
Sbjct: 450 LDLLQEMISS--GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507
Query: 121 ----SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
YN++++ GK + ++E + + + Y ++I L K L+ A +
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+ S++ + LI+ YC+ G ++ L +G + ++ L G+R
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627
Query: 236 QNSQIHKAVEAMKKVLAA 253
+ I+ A++ ++++++
Sbjct: 628 KVGNINGALDIFQEMISS 645
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 34/297 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++ G+ YNSM+ + +G + + L+ EM E I+ D TY ++A+
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
+++ M + + + Y+++ +G+ K LD A M KG N
Sbjct: 340 KFFEAEELYDEMLPR-GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM--ATKGCSPNLI 396
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+N ++ Y + DD + + E+ + + Y +I + DL +A + +E
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S LC D + L+D C NG L+ A ++
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDA-----------------------------LEM 487
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K ++ KK L A +P V++ + +EG AE E + +G +P
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 27/312 (8%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V + +++ + G + +L+ M E+G+ + TY T + D +L
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLR 243
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME ++ + VIY+ + + K G A + +E Q KG + YN ++ +
Sbjct: 244 KMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF--TEMQEKGIFPDLFTYNSMIVGFC 301
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ D ++ E+ ++ + Y +I++ +K AE++++E + + +T
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ +ID +C+ L+ AE++ KG ++ ++ L GY +I +E + ++
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421
Query: 251 --------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ- 301
Y TL+ F GD+ A + ++ + G P +
Sbjct: 422 TETGLVADTTTYNTLIHG-------------FYLVGDLNAALDLLQEMISSGLCPDIVTC 468
Query: 302 DKLLDNV-QNGK 312
D LLD + NGK
Sbjct: 469 DTLLDGLCDNGK 480
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 12/257 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + + +N+++ Y + + L+HEM E G+ + TY T + + D
Sbjct: 356 GCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAA 415
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLK---KSEEQIKGAKVNSA-- 122
+L M V + V T+ +G G L AL M K KS+ I + +
Sbjct: 416 QDLLQEM-VSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVE 474
Query: 123 -----YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN++++ GK + ++E + + + Y +VI L K L+ A ++
Sbjct: 475 PDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQM 534
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+ S++ + LI+ YC+ G ++ L +G + ++ L G+R+
Sbjct: 535 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRK 594
Query: 237 NSQIHKAVEAMKKVLAA 253
I+ A++ ++++A+
Sbjct: 595 VGNINGALDIFQEMMAS 611
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 139/322 (43%), Gaps = 32/322 (9%)
Query: 3 KMRDLGLARTTVVYNSMLK-LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA-D 60
K+ LG T V ++++L L + E LD L H+M + + T+ T ++ +
Sbjct: 138 KITKLGFHPTVVTFSTLLHGLCVEDRISEALD-LFHQMCKPNVV----TFTTLMNGLCRE 192
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
E + + M+E PN + Y T+ +G K+G AL +L+K EE + K
Sbjct: 193 GRVVEAVALLDRMLEDGLQPN----QITYGTIVDGMCKMGDTVSALNLLRKMEE-VSHIK 247
Query: 119 VNSAY------NVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDL 170
N ++ + G+ + ++ + L +K + Y +I++ +K
Sbjct: 248 PNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKF 307
Query: 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230
AE++++E + + T + +ID +C+ L+ AE++ KG + ++ L
Sbjct: 308 FEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTL 367
Query: 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
GY + ++ ++ + ++ A LV + +L + F GD+ A++ ++ +
Sbjct: 368 IAGYCRAKRVDDGIKLLHEMTEA--GLVANTITYTTL---IHGFCQVGDLNAAQDLLQEM 422
Query: 291 NDKGFIP-----TDLQDKLLDN 307
G P L D L DN
Sbjct: 423 VSSGVCPNVVTCNTLLDGLCDN 444
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 133/315 (42%), Gaps = 23/315 (7%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD-ASDHEGIDKIL 71
V + S++ Y +T ++ + L M+ G+ D TY T L A A + EG
Sbjct: 309 VVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHS 368
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131
+ E V++ + Y K G LD A A+ + ++ + + +++ Y
Sbjct: 369 RVFECGFQ---SLVVHTALLTMYAKCGELDAARAVFNR----VRQKRNVYCWTAMISAYA 421
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
+ G + L ++ ++ + + + NV+++ DLE+ KI E+ L +
Sbjct: 422 QAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVA 481
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ N L+ +Y + G LE A++ + GR+ V SW + Y Q+ +A++
Sbjct: 482 VQNALVTMYAKCGSLELAKSAF---EASGRKDLV-SWNAMIGAYAQHGLGREALD----- 532
Query: 251 LAAYQTLVKWK--PSVESLAACLDYFKDEGDIG-GAENFIELLNDKGFIPTDLQDKLLDN 307
YQT+ P ++A+ L G + G E +L ++ F + + L N
Sbjct: 533 --LYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVN 590
Query: 308 VQNGKSNLETLRELY 322
+ LET R ++
Sbjct: 591 MYGRCGRLETARSMF 605
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 13/236 (5%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRL-SAYADASDHEGIDK 69
+ YN ML Y K G + + L H M E G D+ TY L S A S E +
Sbjct: 107 KAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREI 166
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129
+++EA + + + + N YGK G +++A +K + IK S + +++
Sbjct: 167 HASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEA----RKVFDGIKNRDAVS-WTSMISS 221
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
Y G D+ L +++ + + S+LL L + I S + D
Sbjct: 222 YANNGFCDEALDLYQ--QMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDF 279
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
+ + LI++Y R G + A EK++ + HV W L T Y Q +A++
Sbjct: 280 -VGSALINMYARCGDVSSARQAF--EKIQNK--HVVCWTSLMTAYVQTCHYREALD 330
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 124/298 (41%), Gaps = 12/298 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR G+ T +VY +++ E+ +S+ M E G+ + YTY T + Y +
Sbjct: 207 EMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLA 266
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ + ++ M + V D V + + +G K G + KA L + + +
Sbjct: 267 NAKQALRLYQDMLGEGLVP-DVVTFGILIDGLCKFGEM-KAARNLFVNMIKFSVTPNIAV 324
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN ++ Y K G + + ++ EL + V Y +I L + E A IFE+
Sbjct: 325 YNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMT 384
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + ++ N LID C+ G ++KA + + G E +V ++ L GY +
Sbjct: 385 KEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK----- 439
Query: 242 KAVEAMKKVLAAYQTLV--KWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ ++ + Y +V P V + A +D G + A + D G P
Sbjct: 440 --IRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITP 495
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 17/213 (7%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG 66
+G A T N +L + KTG FE L + EM NG++ T+ T + D
Sbjct: 141 VGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLR 200
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNV 125
++ M + ++Y + G +++A +M + E G N YN
Sbjct: 201 AQEMFDEMRVK-GIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREV--GVYPNVYTYNT 257
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFE 178
++ Y K LR+++ +L G + +I L K ++++A +F
Sbjct: 258 LMDGYCKLANAKQALRLYQ------DMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFV 311
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211
++ + + N LID YC+ G + +A L
Sbjct: 312 NMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMAL 344
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 6/145 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM G+ +V YNS++ K G +K + +M ENG+ + T+ T + Y
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + I + M +++ D V Y + +G+ K G + +A LK + +
Sbjct: 440 IRNLQAAMGIYSEMVIK-SLSPDVVTYTAMIDGHCKYGSMKEA---LKLYSDMLDNGITP 495
Query: 121 SAYNVILTLYG--KYGKKDDVLRIW 143
+ Y + L G K GK D L ++
Sbjct: 496 NCYTISCLLDGLCKDGKISDALELF 520
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 21/264 (7%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
L + + YN+++ Y K GN EK + M+ + I T+ T L A E +
Sbjct: 245 LLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAE 304
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KGAKVNS-AYNVI 126
+L M+ D D ++ + +GY +KA A L E + G K+N+ +++
Sbjct: 305 NVLKEMK-DLGFVPDAFTFSILFDGYSSN---EKAEAALGVYETAVDSGVKMNAYTCSIL 360
Query: 127 LTLYGKYGKKDDVLRIW--ELYKKAV--KVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
L K GK + I E+ K V +V+ Y +I + DL A E E
Sbjct: 361 LNALCKEGKIEKAEEILGREMAKGLVPNEVI---YNTMIDGYCRKGDLVGARMKIEAMEK 417
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
Q + D N LI +C G +E AE VN KLKG V+++ L GY + + K
Sbjct: 418 QGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDK 477
Query: 243 AVEAMKKV--------LAAYQTLV 258
+ +K++ + +Y TL+
Sbjct: 478 CFDILKEMEDNGTMPNVVSYGTLI 501
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 103/260 (39%), Gaps = 11/260 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V+YN+M+ Y + G+ + ME+ G+ D Y + + + + E
Sbjct: 384 GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENA 443
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+K + M+ V+ Y + GYG+ DK +LK+ E+ V S Y ++
Sbjct: 444 EKEVNKMKLK-GVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVS-YGTLI 501
Query: 128 TLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
K K + + ++ + V Y +I +E A + +E + +
Sbjct: 502 NCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIE 561
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV-- 244
+ N LID G L +AE+L+ KG + V ++ L +GY + + +
Sbjct: 562 LNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIAL 621
Query: 245 ------EAMKKVLAAYQTLV 258
+K L Y L+
Sbjct: 622 YEEMKRSGIKPTLKTYHLLI 641
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 10/222 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM+ G++ + YN ++ Y + F+K ++ EME+NG + +Y T ++
Sbjct: 447 VNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCK 506
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S + ME D V+ IY + +G G ++ A K E KG ++N
Sbjct: 507 GSKLLEAQIVKRDME-DRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSK--EMLKKGIELN 563
Query: 121 -SAYNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN + L++ GK + +D+L E+ +K +K Y ++IS +++ +
Sbjct: 564 LVTYNTLIDGLSMTGKLSEAEDLL--LEISRKGLKPDVFTYNSLISGYGFAGNVQRCIAL 621
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218
+EE + + + + LI + + G +E E L LK
Sbjct: 622 YEEMKRSGIKPTLKTYHLLISLCTKEG-IELTERLFGEMSLK 662
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 136/317 (42%), Gaps = 12/317 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEG 66
GL + YN ++ + G E+ ++ EM+ G D TY T ++ Y + H+
Sbjct: 268 GLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQA 327
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNV 125
+ +L + D V Y ++ N K G L++A+ + ++G + N Y
Sbjct: 328 L--VLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFF--DQMHVRGLRPNGVTYTS 383
Query: 126 ILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
++ + + G D+ RIW E+ + Y +++ +E A + E +
Sbjct: 384 LINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKG 443
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
L D + +I +CR L++A + KG ++ L G + ++++A
Sbjct: 444 LSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEAC 503
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKL 304
+ +++L ++L+ P + + ++ + EGD+ A N + + KGF+P + +
Sbjct: 504 DLFQEMLN--KSLL---PDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNV 558
Query: 305 LDNVQNGKSNLETLREL 321
L N N ++ + L
Sbjct: 559 LINGLNKQARTREAKRL 575
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 137/333 (41%), Gaps = 46/333 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G A V YN+++ Y K GNF + L EM NG+ D TY + ++
Sbjct: 296 LAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCK 355
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL---------------- 104
A + + M + + V Y ++ NG+ + G +D+A
Sbjct: 356 AGNLNRAMEFFDQMHVR-GLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIV 414
Query: 105 ---AMLK------KSEEQI--------KGAKVNS-AYNVILTLYGKYGKKDDVLRI-WEL 145
A+L + EE I KG + +Y+ I+ + +Y + D ++ E+
Sbjct: 415 TYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEM 474
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+K V Y ++I L + L A +F+E +++L D LI+ YC+ G L
Sbjct: 475 VEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDL 534
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL--------AAYQTL 257
+A NL + KG ++ L G + ++ +A + K+ Y TL
Sbjct: 535 NEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTL 594
Query: 258 VKWKPSVE--SLAACLDYFKDEGDIGGAENFIE 288
++ +E S+ A + F +G + A+ E
Sbjct: 595 IESCSDIEFKSVVALIKGFCMKGLMNEADQVFE 627
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 117/264 (44%), Gaps = 26/264 (9%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T V YN++L + +G E+ L+ ME G++ D +Y T ++ + ++ +
Sbjct: 408 GFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR---YQEL 464
Query: 68 DKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--AY 123
D+ M + V+ D + Y+++ G + L++A + +E + + + Y
Sbjct: 465 DRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLF---QEMLNKSLLPDEFTY 521
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI-----F 177
++ Y K G ++ L + E+ KK Y +I+ L K A+++ +
Sbjct: 522 TSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFY 581
Query: 178 EEWESQALCYDTRIPNF----------LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
+E + YDT I + LI +C GL+ +A+ + + ++ + +
Sbjct: 582 DESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVY 641
Query: 228 YYLATGYRQNSQIHKAVEAMKKVL 251
+ G+ ++ +HKA + K+++
Sbjct: 642 NVIIHGHCRDGNVHKAHKLYKEMV 665
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEE 179
+YN+++ + G + LR +E ++ + L N Y VI + KL ++ A K+
Sbjct: 205 SYNILIRGFCAAGNLEMGLRFFEEMERN-RCLPNVVTYNTVIGAYCKLKRIDEAFKLLRS 263
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L + N +I+ CR G +E+ ++ KG ++ L GY +
Sbjct: 264 MGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGN 323
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
H+A+ VL + P V + + ++ G++ A F + ++ +G P
Sbjct: 324 FHQAL-----VLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRP 376
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 28/297 (9%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ Y+SM+ + K + + + + M G + + T+ T + Y A
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409
Query: 63 D-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+G++ + M E + D Y T+ +G+ VG L+ AL +L +E I
Sbjct: 410 RIDDGMELLHEMTET--GLVADTTTYNTLIHGFYLVGDLNAALDLL---QEMISSGLCPD 464
Query: 122 AYNVILTLYGKY--GKKDDVLRIWELYKKAVKVLN-----NG-------YRNVISSLLKL 167
L G GK D L ++++ +K+ K L+ NG Y +IS L+
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
AE+++EE + + DT + +ID C+ L++A + + K +V ++
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 228 YYLATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
L GY + ++ +E + ++A Y TL+ V ++ LD F++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 112/258 (43%), Gaps = 14/258 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEG 66
G + + +N+++ Y + L+HEM E G+ D TY T + + D +
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN------ 120
+D + M+ + + D V T+ +G G L AL M K ++ K +
Sbjct: 450 LDLLQEMISS--GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507
Query: 121 ----SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
YN++++ GK + ++E + + + Y ++I L K L+ A +
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+ S++ + LI+ YC+ G ++ L +G + ++ L G+R
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627
Query: 236 QNSQIHKAVEAMKKVLAA 253
+ I+ A++ ++++++
Sbjct: 628 KVGNINGALDIFQEMISS 645
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 34/297 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++ G+ YNSM+ + +G + + L+ EM E I+ D TY ++A+
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
+++ M + + + Y+++ +G+ K LD A M KG N
Sbjct: 340 KFFEAEELYDEMLPR-GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM--ATKGCSPNLI 396
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+N ++ Y + DD + + E+ + + Y +I + DL +A + +E
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S LC D + L+D C NG L+ A ++
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDA-----------------------------LEM 487
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K ++ KK L A +P V++ + +EG AE E + +G +P
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 27/312 (8%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V + +++ + G + +L+ M E+G+ + TY T + D +L
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLR 243
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME ++ + VIY+ + + K G A + +E Q KG + YN ++ +
Sbjct: 244 KMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF--TEMQEKGIFPDLFTYNSMIVGFC 301
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ D ++ E+ ++ + Y +I++ +K AE++++E + + +T
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ +ID +C+ L+ AE++ KG ++ ++ L GY +I +E + ++
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421
Query: 251 --------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ- 301
Y TL+ F GD+ A + ++ + G P +
Sbjct: 422 TETGLVADTTTYNTLIHG-------------FYLVGDLNAALDLLQEMISSGLCPDIVTC 468
Query: 302 DKLLDNV-QNGK 312
D LLD + NGK
Sbjct: 469 DTLLDGLCDNGK 480
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 11/244 (4%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+K+ D R TV +NSM+ Y + G + L +MEE G D T + L A +
Sbjct: 183 RKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHL 242
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
D ++L M + L + + + + YGK G LD A + + IK +V
Sbjct: 243 GDLR-TGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFN---QMIKKDRV-- 296
Query: 122 AYNVILTLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
A+ ++T+Y + GK + ++ +E+ K V V+S+ + LE ++I
Sbjct: 297 AWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHA 356
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+L ++ + L+D+Y + G +E+A + +K +W + T Y
Sbjct: 357 SELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNE----ATWNAMITAYAHQGHA 412
Query: 241 HKAV 244
+A+
Sbjct: 413 KEAL 416
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 136/338 (40%), Gaps = 48/338 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC---TRLSA 57
++M G+ ++ Y M+ +Y K GN + D + M E G D T+ +R S
Sbjct: 193 FEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSG 252
Query: 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KG 116
+ + L M +PN+ + + + G K G + +A ML EE + KG
Sbjct: 253 KGYTTRALWYFRRLVDMGLEPNL----INFTCMIEGLCKRGSIKQAFEML---EEMVGKG 305
Query: 117 AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----GYRNVISSLLKLDDLE 171
K N + +L KK + + L+ K V+ N+ Y +IS + D L
Sbjct: 306 WKPNVYTHT--SLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLN 363
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
AE + + Q L +T LID +C+ G E+A +L+N +G ++ ++ +
Sbjct: 364 RAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIV 423
Query: 232 TGYRQNSQIHKAV----------------------------EAMKKVLAAYQTLVK--WK 261
G + ++ +A E +++ LA + ++K +
Sbjct: 424 NGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQ 483
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
P + S + F E + +E F E G IPT+
Sbjct: 484 PDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTN 521
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 46/213 (21%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M++ GL T Y +++ + K GNFE+ LM+ M G +
Sbjct: 369 LSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFS--------------- 413
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
PN+ Y + NG K G + +A ML+ + G K +
Sbjct: 414 -----------------PNLC----TYNAIVNGLCKRGRVQEAYKMLEDGFQN--GLKPD 450
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL----NNGYRNVISSLLKLDDLESAEK 175
YN++++ ++ K++++ + L+ K +K+ + Y +I+ + + ++ +E
Sbjct: 451 KFTYNILMS---EHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEM 507
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
FEE + + +I YCR G L A
Sbjct: 508 FFEEAVRIGIIPTNKTYTSMICGYCREGNLTLA 540
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 65/329 (19%), Positives = 135/329 (41%), Gaps = 19/329 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++ D+GL + + M++ K G+ ++ ++ EM G + YT+ + +
Sbjct: 263 FRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCK 322
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++ + N + + Y + +GY + L++A +L + +EQ G N
Sbjct: 323 KGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQ--GLVPN 380
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELY----KKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ N TL + K + R ++L + Y +++ L K ++ A K+
Sbjct: 381 T--NTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKM 438
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL-ATGYR 235
E+ L D N L+ +C+ + +A L N G + + S+ L A R
Sbjct: 439 LEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCR 498
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWK--PSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+N MK+ ++ V+ P+ ++ + + + EG++ A F L+D
Sbjct: 499 ENR--------MKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDH 550
Query: 294 GFIPTDLQDKLLDNVQNGKSNLETLRELY 322
G P + + + +S + R LY
Sbjct: 551 GCAPDSITYGAIISGLCKQSKRDEARSLY 579
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 130/323 (40%), Gaps = 24/323 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
KM G + T V YN+++ K G ++ M+E+ D TYC +S +
Sbjct: 430 FNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCK 489
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ M PN W Y + +GY K G +D AL++ ++ EE A
Sbjct: 490 GGKLDSATSFFYEMLKCGISPN---QWT-YTAMIDGYCKEGKIDVALSLFERMEENGCSA 545
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ + YN I++ K + + + ++ ++ ++ Y ++I+ L K A KI
Sbjct: 546 SIET-YNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKI 604
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F E E + + LI C+ G ++ AE L + G E + ++ L +G +
Sbjct: 605 FHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTEN----GCEPTIDTYSTLVSGLCR 660
Query: 237 NSQIHKA---VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
+ ++A VE MK+ PS+E + L + A L+ K
Sbjct: 661 EGRSNEASQLVENMKE--------KGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVK 712
Query: 294 GFIPTDLQDKLLDNVQNGKSNLE 316
GF P K+L G S E
Sbjct: 713 GFQPHLFIYKVLICALCGVSRAE 735
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 16/297 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G +V Y++++ G + ++ EM E GI YTY +S+ D
Sbjct: 257 RMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIG 316
Query: 63 D-HEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ I+ + +M + P+V Y + +G + G ++ A+ M K ++ G
Sbjct: 317 RVDDAINLVRSMGKKGCSPSVQ----TYTAIISGLFRAGKMELAIGMYHKMLKE--GLVP 370
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIF 177
N+ YN ++ G+ L+I++ + + N Y +I L +DD+E A +F
Sbjct: 371 NTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVF 430
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ N LI + G L A + K E +++ L +G+ +
Sbjct: 431 NKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKG 490
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
++ A ++L + +W + A +D + EG I A + E + + G
Sbjct: 491 GKLDSATSFFYEMLKCGISPNQW-----TYTAMIDGYCKEGKIDVALSLFERMEENG 542
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 107/248 (43%), Gaps = 9/248 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ + + +N+M+ + K G ++ + +++ + + D +TY + + + +
Sbjct: 192 GVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKA 251
Query: 68 DKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
++ M D PN V Y+T+ NG G + +A+ ML++ E+ V + Y
Sbjct: 252 FEVFDRMVKDGCNPNS----VTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYT-YT 306
Query: 125 VILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
V ++ G+ DD + + + KK Y +IS L + +E A ++ + +
Sbjct: 307 VPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKE 366
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
L +T N LI+ C G A + + + G + +++ + G I KA
Sbjct: 367 GLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKA 426
Query: 244 VEAMKKVL 251
+ K+L
Sbjct: 427 MVVFNKML 434
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 121/335 (36%), Gaps = 51/335 (15%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
KM GL TV YN+++ G F + ME +G + TY +
Sbjct: 361 HKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGM 420
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKA---LAMLKKSEEQ-- 113
D E + M D P V V Y T+ K G L+ A L M+K+S +
Sbjct: 421 DDIEKAMVVFNKMLKDGPSPTV----VTYNTLIVENLKRGYLNNATRFLYMMKESNCEPD 476
Query: 114 -----------IKGAKVNSA------------------YNVILTLYGKYGKKDDVLRIWE 144
KG K++SA Y ++ Y K GK D L ++E
Sbjct: 477 ERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFE 536
Query: 145 -LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
+ + Y +IS L K + AEK + Q L +T LI+ C+N
Sbjct: 537 RMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNT 596
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
A + + + K + ++ L G Q ++ A + +P+
Sbjct: 597 ATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTEN---------GCEPT 647
Query: 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+++ + + EG A +E + +KG P+
Sbjct: 648 IDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPS 682
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 99/244 (40%), Gaps = 3/244 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M G + + Y +++ ++ G E + H+M + G+ + TY ++
Sbjct: 325 VRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCT 384
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
KI ME +A + Y + G + ++KA+ + K + V
Sbjct: 385 EGRFGIALKIFDWMEGHGTLA-NAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTV- 442
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++ K G ++ R + K++ + Y +IS K L+SA F E
Sbjct: 443 VTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYE 502
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ + +ID YC+ G ++ A +L + G ++++ + +G + ++
Sbjct: 503 MLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNR 562
Query: 240 IHKA 243
+A
Sbjct: 563 FSEA 566
>gi|395508129|ref|XP_003758366.1| PREDICTED: leucine-rich PPR motif-containing protein, mitochondrial
[Sarcophilus harrisii]
Length = 1400
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K+++LG+ YN++LK+Y + + + +MEE I +R TY ++AY +
Sbjct: 171 KLQELGVTYDISHYNALLKVYLQNEHEFSPTDFLAKMEEANIQPNRVTYQRLIAAYCNKG 230
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
D EG KIL M+ N+ + ++++T+ G+ + G + A +L E G +
Sbjct: 231 DIEGASKILGFMKTK-NIPVTEIVFSTLITGHARTGDMQNAENILSVMRE--AGIEPGPD 287
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y +L Y + G D V++ E+ +K +++ +I S K + +I E
Sbjct: 288 TYLALLNAYAEKGDIDHVIQTLEMMEKTDNYLMDRDLMQIIFSFSKAGYPQYVSEILERM 347
Query: 181 ESQALCYDTRIPNFL 195
+ + C IP+ +
Sbjct: 348 KFERRC----IPDVM 358
>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 511
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M A T V YN+++++Y K G EK+D M+ G+ + TYC+ ++AY+
Sbjct: 332 MDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSK 391
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDK 102
A ID IL +E + +V LD + + + YG+VG L K
Sbjct: 392 AGLIRKIDSILRHVE-NSDVILDTPFFNCIISAYGQVGDLKK 432
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
+N M+K Y K G ++K+ S+M ME TY T + Y A + E +DK M
Sbjct: 311 TFNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNM 370
Query: 75 E---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILT 128
+ PN V Y ++ N Y K GL+ K ++L+ ++ + V +N I++
Sbjct: 371 KHIGMKPNS----VTYCSLVNAYSKAGLIRKIDSILR----HVENSDVILDTPFFNCIIS 422
Query: 129 LYGKYGKKDDVLRIWELY 146
YG+ G D+ ++ EL+
Sbjct: 423 AYGQVG---DLKKMGELF 437
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 100/209 (47%), Gaps = 10/209 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYADASDHEG 66
G+ +V YNS++ Y K G FE++++ + +M EN D +T + + +Y + +
Sbjct: 233 GIECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDK 292
Query: 67 IDKI---LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
++K +M P++ + + YGK G+ DK +++ E + + + Y
Sbjct: 293 MEKWYDEFQLMSIKPDIK----TFNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVT-Y 347
Query: 124 NVILTLYGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N ++ +YGK G+ + + + ++ K +K + Y +++++ K + + I E+
Sbjct: 348 NTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVEN 407
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENL 211
+ DT N +I Y + G L+K L
Sbjct: 408 SDVILDTPFFNCIISAYGQVGDLKKMGEL 436
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 10/205 (4%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMM 74
Y+ ++ K F+ ++ ++ +M +GI + TY + + Y A E ++ LT M
Sbjct: 205 TYSVLISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDM 264
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-QIKGAKVN-SAYNVILTLYGK 132
+ N D ++ YG G +DK M K +E Q+ K + +N+++ YGK
Sbjct: 265 IENENCQPDVFTLNSLIGSYGNGGKIDK---MEKWYDEFQLMSIKPDIKTFNMMIKSYGK 321
Query: 133 YGKKDDVLRIWELYKK---AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189
G D + + + ++ A ++ Y VI K ++E +K F+ + + ++
Sbjct: 322 AGMYDKMKSVMDFMERRFFAPTIVT--YNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNS 379
Query: 190 RIPNFLIDVYCRNGLLEKAENLVNH 214
L++ Y + GL+ K ++++ H
Sbjct: 380 VTYCSLVNAYSKAGLIRKIDSILRH 404
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M+ +G+ +V Y S++ Y K G K+DS++ +E + + D + +SAY
Sbjct: 367 FKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQ 426
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103
D + + ++ M A D + + Y G+ + A
Sbjct: 427 VGDLKKMGELFLAMRAR-KCEPDRTTFTCMIQAYNTQGITEAA 468
>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
Length = 695
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 44/278 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G R V +NSM+ Y K G+ +L +EM + D ++ T +S Y ASD +
Sbjct: 234 GFERNVVSWNSMMICYIKAGDVCSARALFNEMPDK----DLVSWNTMISGYTQASDMKES 289
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+K+ M DP D V + + G+ + G + A + E + ++N ++
Sbjct: 290 EKLFWEMP-DP----DTVSWNLIIQGFMQKGEAEHARGFFDRMPE-----RGTISWNTMI 339
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL----KLDDLESAEKIFEEWESQ 183
+ Y K G ++ L+ K ++V R+ SS+L + L +I + E +
Sbjct: 340 SGYEKNGNYISSVK---LFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVE-K 395
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK----SWYYLATGYRQNSQ 239
+ DT I N LI +Y R G L AE + +++H K SW L Y + +
Sbjct: 396 SFVPDTAISNALITMYSRCGALNDAEAIF-------KQMHTKKDLVSWNALIGCYEHHGR 448
Query: 240 IHKAVEAMK-----KVLAAYQTLVKWKPSVESLAACLD 272
KA++ K KV+ + T V L+AC++
Sbjct: 449 ATKALQLFKEMRRAKVMPTHITF------VSLLSACVN 480
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 138/335 (41%), Gaps = 60/335 (17%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
R V +N++L Y + G ++ L EM + ++ T ++ + A + K
Sbjct: 94 RDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAA----SWNTMVTGFFAAGQ---VVKA 146
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130
L + +A P A D +T+ +G+ K G+L +A +L K K AYN ++ Y
Sbjct: 147 LDVFDAMP--AKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAY 204
Query: 131 GKYGKKDDVLRIWELYKKAVKVLN----NGY-RNVIS------SLLKLDDLESAEKIFEE 179
G+ G+ D R++++ K N G+ RNV+S +K D+ SA +F E
Sbjct: 205 GQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNE 264
Query: 180 --------W--------------ESQALCYDTRIP-----NFLIDVYCRNGLLEKAENLV 212
W ES+ L ++ P N +I + + G E A
Sbjct: 265 MPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFF 324
Query: 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272
+ +G SW + +GY +N +V+ K+L + P + ++ L
Sbjct: 325 DRMPERG----TISWNTMISGYEKNGNYISSVKLFSKMLEVGEI-----PDRHTFSSVLA 375
Query: 273 YFKDEGDIG-GAENFIELLNDKGFIP-TDLQDKLL 305
+G GA+ I L +K F+P T + + L+
Sbjct: 376 ACASIPMLGLGAQ--IHQLVEKSFVPDTAISNALI 408
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD-------ASD 63
R T+ +N+M+ Y K GN+ L +M E G DR+T+ + L+A A A
Sbjct: 330 RGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQI 389
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
H+ ++K P+ A+ + Y + G L+ A A+ K Q+ K ++
Sbjct: 390 HQLVEKSFV-----PDTAISNALITM----YSRCGALNDAEAIFK----QMHTKKDLVSW 436
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N ++ Y +G+ L+++ E+ + V + + +++S+ + + +F+
Sbjct: 437 NALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVH 496
Query: 183 QALCYDTRIPNF--LIDVYCRNGLLEKAENLVN 213
+ RI ++ L+++ R+G L+ A ++N
Sbjct: 497 E-YGIVARIEHYAALVNLIGRHGQLDDALEVIN 528
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 134/297 (45%), Gaps = 10/297 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G++ V Y+S++ TG +E L +EM + G+ + T+ + A A
Sbjct: 263 EMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAG 322
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
E + +L +M + D Y T+ +G+ G +D A + E KG + ++
Sbjct: 323 KMEEANHLLKLM-IQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMES--KGIETDAV 379
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+YNV++ Y K G+ + +++ E+ K + Y +++ L + + A +F E
Sbjct: 380 SYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEM 439
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ L ++ N L+D C+N L +A L ++ + + ++ + L G + +I
Sbjct: 440 KVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKI 499
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A E ++ +++ L +P+V + + G + A++ + +KG P
Sbjct: 500 EIARELFNRL--SHEGL---EPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAP 551
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 129/315 (40%), Gaps = 50/315 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M D G+ V +N ++ K G E+ + L+ M + G + D +TY T + +
Sbjct: 298 EMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEG 357
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ + ME+ + D V Y + NGY K G + +A KK ++ ++
Sbjct: 358 RIDDARDLFVSMESK-GIETDAVSYNVLINGYCKSGRMVEA----KKLYREMMCKEIMPT 412
Query: 123 ---YNVILTLYGKYGKKDDV------LRIWELYKKAV--KVLNNG--------------- 156
YN +LT + GK D +++ +L ++ +L +G
Sbjct: 413 VITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFH 472
Query: 157 -------------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
+ +I L K +E A ++F + L + +I C++G
Sbjct: 473 YLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSG 532
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263
LE A++L + KG ++ ++ L G+ QN ++ K VE ++++ + P
Sbjct: 533 QLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEK-----DFSPD 587
Query: 264 VESLAACLDYF-KDE 277
+++ +D KDE
Sbjct: 588 ASTISIVVDLLSKDE 602
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 111/261 (42%), Gaps = 13/261 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G + TV + S++K + L+ +M G + TY T L+
Sbjct: 150 LGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCM 209
Query: 61 ASDHEGIDKILT-MMEADPNVAL----DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
+ K+ M+ + + + V Y T+ + K GL+DK K+ ++K
Sbjct: 210 TGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKG----KELFLEMK 265
Query: 116 GAKVNS---AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLE 171
G ++ AY+ I+ G+ + ++ E+ + V + +I +L K +E
Sbjct: 266 GRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKME 325
Query: 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
A + + + DT N LID +C G ++ A +L + KG E S+ L
Sbjct: 326 EANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLI 385
Query: 232 TGYRQNSQIHKAVEAMKKVLA 252
GY ++ ++ +A + ++++
Sbjct: 386 NGYCKSGRMVEAKKLYREMMC 406
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 28/297 (9%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ Y+SM+ + K + + + + M G + + T+ T + Y A
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409
Query: 63 D-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+G++ + M E + D Y T+ +G+ VG L+ AL +L +E I
Sbjct: 410 RIDDGMELLHEMTET--GLVADTTTYNTLIHGFYLVGDLNAALDLL---QEMISSGLCPD 464
Query: 122 AYNVILTLYGKY--GKKDDVLRIWELYKKAVKVLN-----NG-------YRNVISSLLKL 167
L G GK D L ++++ +K+ K L+ NG Y +IS L+
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
AE+++EE + + DT + +ID C+ L++A + + K +V ++
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 228 YYLATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
L GY + ++ +E + ++A Y TL+ V ++ LD F++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 112/258 (43%), Gaps = 14/258 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEG 66
G + + +N+++ Y + L+HEM E G+ D TY T + + D +
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN------ 120
+D + M+ + + D V T+ +G G L AL M K ++ K +
Sbjct: 450 LDLLQEMISS--GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507
Query: 121 ----SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
YN++++ GK + ++E + + + Y ++I L K L+ A +
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+ S++ + LI+ YC+ G ++ L +G + ++ L G+R
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627
Query: 236 QNSQIHKAVEAMKKVLAA 253
+ I+ A++ ++++++
Sbjct: 628 KVGNINGALDIFQEMISS 645
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 34/297 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++ G+ YNSM+ + +G + + L+ EM E I+ D TY ++A+
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
+++ M + + + Y+++ +G+ K LD A M KG N
Sbjct: 340 KFFEAEELYDEMLPR-GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM--ATKGCSPNLI 396
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+N ++ Y + DD + + E+ + + Y +I + DL +A + +E
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S LC D + L+D C NG L+ A ++
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDA-----------------------------LEM 487
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K ++ KK L A +P V++ + +EG AE E + +G +P
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 27/312 (8%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V + +++ + G + +L+ M E+G+ + TY T + D +L
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLR 243
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME ++ + VIY+ + + K G A + +E Q KG + YN ++ +
Sbjct: 244 KMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF--TEMQEKGIFPDLFTYNSMIVGFC 301
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ D ++ E+ ++ + Y +I++ +K AE++++E + + +T
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ +ID +C+ L+ AE++ KG ++ ++ L GY +I +E + ++
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421
Query: 251 --------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ- 301
Y TL+ F GD+ A + ++ + G P +
Sbjct: 422 TETGLVADTTTYNTLIHG-------------FYLVGDLNAALDLLQEMISSGLCPDIVTC 468
Query: 302 DKLLDNV-QNGK 312
D LLD + NGK
Sbjct: 469 DTLLDGLCDNGK 480
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 28/297 (9%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G+ T+ Y+SM+ + K + + + + M G + + T+ T + Y A
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409
Query: 63 D-HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+G++ + M E + D Y T+ +G+ VG L+ AL +L +E I
Sbjct: 410 RIDDGMELLHEMTET--GLVADTTTYNTLIHGFYLVGDLNAALDLL---QEMISSGLCPD 464
Query: 122 AYNVILTLYGKY--GKKDDVLRIWELYKKAVKVLN-----NG-------YRNVISSLLKL 167
L G GK D L ++++ +K+ K L+ NG Y +IS L+
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524
Query: 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
AE+++EE + + DT + +ID C+ L++A + + K +V ++
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 228 YYLATGYRQNSQIHKAVEAM-----KKVLA---AYQTLVKWKPSVESLAACLDYFKD 276
L GY + ++ +E + ++A Y TL+ V ++ LD F++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 112/258 (43%), Gaps = 14/258 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEG 66
G + + +N+++ Y + L+HEM E G+ D TY T + + D +
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN------ 120
+D + M+ + + D V T+ +G G L AL M K ++ K +
Sbjct: 450 LDLLQEMISS--GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGV 507
Query: 121 ----SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
YN++++ GK + ++E + + + Y ++I L K L+ A +
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+F+ S++ + LI+ YC+ G ++ L +G + ++ L G+R
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627
Query: 236 QNSQIHKAVEAMKKVLAA 253
+ I+ A++ ++++++
Sbjct: 628 KVGNINGALDIFQEMISS 645
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 34/297 (11%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M++ G+ YNSM+ + +G + + L+ EM E I+ D TY ++A+
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
+++ M + + + Y+++ +G+ K LD A M KG N
Sbjct: 340 KFFEAEELYDEMLPR-GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM--ATKGCSPNLI 396
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+N ++ Y + DD + + E+ + + Y +I + DL +A + +E
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S LC D + L+D C NG L+ A ++
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDA-----------------------------LEM 487
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K ++ KK L A +P V++ + +EG AE E + +G +P
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 27/312 (8%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V + +++ + G + +L+ M E+G+ + TY T + D +L
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLR 243
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYG 131
ME ++ + VIY+ + + K G A + +E Q KG + YN ++ +
Sbjct: 244 KMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF--TEMQEKGIFPDLFTYNSMIVGFC 301
Query: 132 KYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
G+ D ++ E+ ++ + Y +I++ +K AE++++E + + +T
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+ +ID +C+ L+ AE++ KG ++ ++ L GY +I +E + ++
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421
Query: 251 --------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ- 301
Y TL+ F GD+ A + ++ + G P +
Sbjct: 422 TETGLVADTTTYNTLIHG-------------FYLVGDLNAALDLLQEMISSGLCPDIVTC 468
Query: 302 DKLLDNV-QNGK 312
D LLD + NGK
Sbjct: 469 DTLLDGLCDNGK 480
>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 457
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D G + Y +++K ++ G E+ ++ EM G T+D + YCT ++A E
Sbjct: 211 DFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIE 270
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
D+I M ++ V D Y T+ N + + G D+AL ++ + E+Q G K + Y
Sbjct: 271 EADEIAEKMMSNGLVP-DLASYNTMINLFCRQGRFDEALRLVDEIEKQ--GMKCDQ-YTH 326
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-----YRNVISSLLKLDDLESAEKIFEEW 180
+ ++G KD E + + L G + +++ L K D++ A K+F+
Sbjct: 327 TIIIHGLC--KDGNFEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSM 384
Query: 181 E 181
E
Sbjct: 385 E 385
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM GL YN+M+ L+ + G F++ L+ E+E+ G+ D+YT+ +
Sbjct: 277 EKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKD 336
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSE 111
+ EG +K L M + V + ++ + GK G +DKA+ + E
Sbjct: 337 GNFEGAEKHLDYMNT-LGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSME 385
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 99/254 (38%), Gaps = 35/254 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M++ G+ V YNS+ + +K L EM ++GI D ++Y + Y
Sbjct: 65 LNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFR 124
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-------SEEQ 113
E + + + + Y + NG K G ++ AL + + E
Sbjct: 125 LGKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVL 184
Query: 114 IKGAKVNS---------------------------AYNVILTLYGKYGKKDDVLRIW-EL 145
A +N Y ++ + G+ + L I E+
Sbjct: 185 TYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEM 244
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+K Y V+++L+K +E A++I E+ S L D N +I+++CR G
Sbjct: 245 RRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRF 304
Query: 206 EKAENLVNHEKLKG 219
++A LV+ + +G
Sbjct: 305 DEALRLVDEIEKQG 318
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 121/271 (44%), Gaps = 30/271 (11%)
Query: 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLS-AYADASDHE 65
LGL + YN+++ Y + + ++++ M+E GI D +Y + S A +
Sbjct: 36 LGLNPDIITYNTLIDGYCRFVGIDAAYNILNRMKEAGINPDVVSYNSLSSGAVRKCLLQK 95
Query: 66 GIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+D M+++ P+V W Y + + Y ++G ++A + + E+ + ++Y
Sbjct: 96 SLDLFDEMLQSGIRPDV---WS-YNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASY 151
Query: 124 NVILTLYGKYGKKDDVLRIWELYKK---AVKVLNNGYRNVISSLLKLDDLESAEKIFEE- 179
NV++ K G ++ L ++ ++ +VL Y +I+ L K L A ++ E
Sbjct: 152 NVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLT--YNAMINGLCKARRLADARRVLNEF 209
Query: 180 ----WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+E A+ Y T ++ R G LE+ +++ + KG ++ +
Sbjct: 210 CDFGFEPNAITYTT-----VMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALV 264
Query: 236 QNSQIHKAVEAMKKV--------LAAYQTLV 258
+ +I +A E +K+ LA+Y T++
Sbjct: 265 KTGRIEEADEIAEKMMSNGLVPDLASYNTMI 295
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,552,558,812
Number of Sequences: 23463169
Number of extensions: 233029566
Number of successful extensions: 591721
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1812
Number of HSP's successfully gapped in prelim test: 4385
Number of HSP's that attempted gapping in prelim test: 549859
Number of HSP's gapped (non-prelim): 28273
length of query: 349
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 206
effective length of database: 9,003,962,200
effective search space: 1854816213200
effective search space used: 1854816213200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 77 (34.3 bits)