BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018924
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 144 ELYKKAVKVLNN---GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
LY+KA++V + N+ S L + L+ A ++E RI D Y
Sbjct: 30 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE--------AIRISPTFADAYS 81
Query: 201 RNG-LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK 259
G L++ +++ + R I + + A + + IHK + + +A+Y+T +K
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIPEAIASYRTALK 139
Query: 260 WKPSVE----SLAACLDYFKDEGD 279
KP +LA CL D D
Sbjct: 140 LKPDFPDAYCNLAHCLQIVCDWTD 163
>pdb|3GE6|A Chain A, Crystal Structure Of A Putative Nitroreductase In Complex
With Fmn (Exig_2970) From Exiguobacterium Sibiricum
255-15 At 1.85 A Resolution
pdb|3GE6|B Chain B, Crystal Structure Of A Putative Nitroreductase In Complex
With Fmn (Exig_2970) From Exiguobacterium Sibiricum
255-15 At 1.85 A Resolution
Length = 212
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE 265
E+ ++ L ++ + W +L +S+ KA A LA + + VE
Sbjct: 32 EEXTQILEEATLAPSSVNXQPWRFLVI----DSEEGKATLAP---LAKFNQV-----QVE 79
Query: 266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNL 315
+ +A + F D I EN + +KG P +++D+ + +Q N+
Sbjct: 80 TSSAVIAVFGDXKAIDQLENIYDTAVEKGLXPQEVRDRQVPAIQGXYENV 129
>pdb|3RRU|A Chain A, X-Ray Crystal Structure Of The Vhs Domain Of Human
Tom1-Like Protein, Northeast Structural Genomics
Consortium Target Hr3050e
pdb|3RRU|B Chain B, X-Ray Crystal Structure Of The Vhs Domain Of Human
Tom1-Like Protein, Northeast Structural Genomics
Consortium Target Hr3050e
Length = 152
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 14/67 (20%)
Query: 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQN------GKSNL 315
PS +SL ++ K EN ++LLN + +P D+Q+++L+ ++ G ++
Sbjct: 87 PSFQSLIVKKEFVK--------ENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDV 138
Query: 316 ETLRELY 322
++E+Y
Sbjct: 139 SEVKEVY 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,909,702
Number of Sequences: 62578
Number of extensions: 470958
Number of successful extensions: 1476
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 8
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)