BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018924
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 181/299 (60%), Gaps = 2/299 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M++LG + + YN ML LY +TG + ++ L+ EME+ + D +T TRL AY+
Sbjct: 162 FQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSV 221
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
SD EG++K L EAD + LDW YA NGY K GL +KAL ML+KSE+ + K
Sbjct: 222 VSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRK 281
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V+++ YG GKK++V R+W LYK+ N GY +VIS+LLK+DD+E EKI EEW
Sbjct: 282 HAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEW 341
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E+ +D RIP+ LI YC+ G++EKAE +VN K R +W LA GY+ ++
Sbjct: 342 EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKM 401
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
KAVE K+ + + W+P L +C+DY + + D+ G + LL+++G I D
Sbjct: 402 EKAVEKWKRAIEVSKP--GWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHISYD 458
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 188/337 (55%), Gaps = 7/337 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM++L + +++ YNS++ LY KTG EK+ +++ E++ + D YTY + A A
Sbjct: 146 LNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAA 205
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D G+++++ M D VA DW Y+ + + Y GL KA L+ E ++K + +
Sbjct: 206 TNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQ--ELEMKNTQRD 263
Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFE 178
+AY ++TLYG+ GK +V RIW + A+ K N Y N+I L+KL+DL AE +F+
Sbjct: 264 FTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFK 323
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
EW++ YD RI N LI Y + GL++KA L +G +++ K+W Y ++
Sbjct: 324 EWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSG 383
Query: 239 QIHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL-NDKGFI 296
+ +A+E M K ++ + KW PS E++ A + YF+ + D+ GAEN +E+L N I
Sbjct: 384 DMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNI 443
Query: 297 PTDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
++ + L+ GKS+ R L ++ NE T
Sbjct: 444 GAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEAT 480
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 171/320 (53%), Gaps = 3/320 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM+++G +++ YN+++ LY G EK+ ++ EM+E + D Y+Y ++A+
Sbjct: 149 FEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGA 208
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D E I L ME ++ +DW YA Y G D+A+ +LK SE +++ K
Sbjct: 209 MYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLE-KKDG 267
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++TLY + GKK +VLR+W+L K K +N Y V+ SL+K+D L AE++ E
Sbjct: 268 EGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTE 327
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W+S CYD R+PN +I Y + EKAE ++ +G+ +SW +AT Y +
Sbjct: 328 WKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGT 387
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ A + MK L KW+P + + + L + DEG + E+F+ L + +
Sbjct: 388 LENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQ 447
Query: 300 LQDKLLD-NVQNGKSNLETL 318
+ L+ +++ G N++TL
Sbjct: 448 MYHALVKADIREGGRNIDTL 467
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 165/304 (54%), Gaps = 7/304 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ MRD G A + +N M+ LY ++K+D+++ EM++ I D Y+Y LS+
Sbjct: 192 LNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGS 251
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E ++ + M++D ++ +W ++T+ Y K+G +KA L+K E +I G +
Sbjct: 252 LGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITG-RNR 310
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ +L+LYG G K ++ R+W +YK V + N GY ++SSL+++ D+E AEK++EE
Sbjct: 311 IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEE 370
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
W YD RIPN L++ Y +N LE AE L +H G + +W LA G+ +
Sbjct: 371 WLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRC 430
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
I +A+ ++ +A + W+P V L+ ++E D+ E +ELL G D
Sbjct: 431 ISEALTCLRNAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSG----D 485
Query: 300 LQDK 303
L+DK
Sbjct: 486 LEDK 489
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 161/313 (51%), Gaps = 3/313 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+K+ LG T +N M+KLY +G +EK+ ++ M+ N I + +Y ++A +
Sbjct: 166 MEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCE 225
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S ++ + M D +V + W T+ N Y K G +KA +L+ +E+ + +
Sbjct: 226 VSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSN-R 284
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y ++TLY G K+ V+R+WE+ K ++ Y V+SSL+K DLE AE++F E
Sbjct: 285 LGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSE 344
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WE+Q YD R+ N L+ Y RNG + KAE+L +G + K+W L G+ +
Sbjct: 345 WEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCEN 404
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ KA++AM +V + W+PS + A +YF+ E I A ++ L+ G
Sbjct: 405 MEKAIDAMHQVFVLMRR-CHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLP 463
Query: 300 LQDKLLDNVQNGK 312
L LL ++ K
Sbjct: 464 LYRLLLRMHEHAK 476
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 130/224 (58%), Gaps = 1/224 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
QKMRDLGL V YN+M+ LY N EK++ L+ EM++N + D T L Y+
Sbjct: 161 FQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSA 220
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D ++K L E + L+W + Y + KA+ ML+ +E+ + +
Sbjct: 221 VCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLK 280
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
SAY+ ++ LYG+ G +++VLR+W+LYK + + NNGYR VI SLLK+DD+ AE+I++
Sbjct: 281 SAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKV 340
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
WES L +D RIP L Y G+ EKAE L+N + +K R ++
Sbjct: 341 WESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMN 384
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 15 VYNSMLKLYYKT----GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI 70
VY ++L Y K+ GN +D ++ EMEEN + D T L YA S + ++
Sbjct: 471 VYVALLSSYAKSDKNLGNM--VDEILREMEENNVDPDLITVNHVLKVYAAESKIQAMEMF 528
Query: 71 LTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103
+ + + L+ + Y K GL K+
Sbjct: 529 MRRWGTEDGIKLERGTMIAMAKAYVKAGLTKKS 561
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 154/306 (50%), Gaps = 7/306 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM + G ++ + YN ML +Y G FEK+ L+ E++ + D TY L+A+A
Sbjct: 185 FEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLWLTAFAS 243
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+D EG +K+ + + + DWV Y+ + N Y K ++KA LK+ E+ + K
Sbjct: 244 GNDVEGAEKVY-LKAKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLV-SKKNR 301
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
AY +++L+ G KD V W+ K + K +N+ Y ++IS+++KL + E A+ +++E
Sbjct: 302 VAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDE 361
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES + D RIPN ++ Y + E KG +W L Y +
Sbjct: 362 WESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKD 421
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ K ++ K A ++ KW +V + +++G++ GAE + LL G++ T
Sbjct: 422 MEKVLDCFGK---AIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQ 478
Query: 300 LQDKLL 305
L + LL
Sbjct: 479 LYNSLL 484
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 151/294 (51%), Gaps = 9/294 (3%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M +L ++ +N+M+ +Y + EK+ L+ M++ GI+ TY + + +D
Sbjct: 198 MDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLND 257
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+G++KI+ M D W ++ + Y K GL +KA + LK EE++ +S +
Sbjct: 258 LDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDS-H 316
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWES 182
+ +++LY K +V R+WE KKA +NN Y ++ ++ KL DL+ +KIF EWES
Sbjct: 317 HFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWES 376
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ YD R+ N I+ Y + + E+AE +++ K + K+ L +N K
Sbjct: 377 KCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLEND---K 433
Query: 243 AVEAMKKVLAAYQTLV----KWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
A AMK + AA +W S E ++ +F+ D+ GAE+F ++L++
Sbjct: 434 ADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSN 487
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 6/293 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M DL ++ +N+++ +Y G EK+ +L+ M+E IT TY + +
Sbjct: 163 FENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGS 222
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +G++K+L M+A+ W +A + Y KVGL KA LK E + V
Sbjct: 223 LKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNM-NPDVR 281
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
Y+ ++ LY +V R+W+L KK +NN Y ++ +L KLDD++ +K+F E
Sbjct: 282 DCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAE 341
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
WES YD R+ N I Y + + E+AE + N K + K+ L +N Q
Sbjct: 342 WESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQ 401
Query: 240 IHKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
A A+K AA K W S E +++ +F++ D+ GAE F + L
Sbjct: 402 ---ADLALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLT 451
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 9/293 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG + + ML L +K + +K+ ++ ME+ I TY + +
Sbjct: 254 KMKDLGFPLSGFTCDQML-LLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATN 312
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++IL M+ D V LD+ A Y GL DKA +LK+ E + A A
Sbjct: 313 DISGMEQILETMK-DEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEAN-RRA 370
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
+ +L++Y G++D+V RIW++ + K I + KL+ ++ AE IFE+
Sbjct: 371 FKDLLSIYASLGREDEVKRIWKICES--KPYFEESLAAIQAFGKLNKVQEAEAIFEKIVK 428
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + L+ VY + +L K ++LV G I +W L Y + ++ K
Sbjct: 429 MDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEK 488
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
A + K T K + S +D + GD+ E + + G+
Sbjct: 489 ADSLLDKASKQSHT----KLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGY 537
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 122/246 (49%), Gaps = 7/246 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M++ G+A YNS++ K ++ S + EM ENG+ + +TY +S Y +
Sbjct: 475 LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE 534
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ--IKGAK 118
AS+ DK + M + V + V+ + N Y K G + +A + + +Q + AK
Sbjct: 535 ASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAK 593
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
Y V++ K K DD I+ E+ K + Y +I+ KL +++ A IF
Sbjct: 594 ---TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+E + L + I N L+ +CR+G +EKA+ L++ +KG + ++ + GY ++
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710
Query: 238 SQIHKA 243
+ +A
Sbjct: 711 GDLAEA 716
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 129/306 (42%), Gaps = 19/306 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++MR+ G+ V+ ++ Y K G + S M + GI D TY ++
Sbjct: 545 VKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFK 604
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++I M +A D Y + NG+ K+G + KA ++ + E+ G N
Sbjct: 605 NDKVDDAEEIFREMRGK-GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE--GLTPN 661
Query: 121 SA-YNVILTLYGKYGKKD------DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173
YN++L + + G+ + D + + L+ AV Y +I K DL A
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT-----YCTIIDGYCKSGDLAEA 716
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++F+E + + L D+ + L+D CR +E+A + K KG + L
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALINW 775
Query: 234 YRQNSQIHKAVEAMKKVL-AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+ + E + +++ ++ KP+ + +DY EG++ A+ + +
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRF--GKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 293 KGFIPT 298
+PT
Sbjct: 834 ANLMPT 839
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 14/294 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL Y S+++ Y + N + L+ EM++ I YTY T + + D +G
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436
Query: 68 DKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
I+ M A PNV VIY T+ + + A+ +LK+ +EQ + YN
Sbjct: 437 YNIVKEMIASGCRPNV----VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI-FCYN 491
Query: 125 VILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
++ K + D+ + E+ + +K Y IS ++ + SA+K +E
Sbjct: 492 SLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ + + LI+ YC+ G + +A + +G K++ L G +N ++ A
Sbjct: 552 GVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDA 611
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
E +++ P V S ++ F G++ A + + + ++G P
Sbjct: 612 EEIFREMRGK-----GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 20/264 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++MR G+A Y ++ + K GN +K S+ EM E G+T + Y L +
Sbjct: 615 FREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCR 674
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + E ++L M PN V Y T+ +GY K G L +A + E ++KG
Sbjct: 675 SGEIEKAKELLDEMSVKGLHPNA----VTYCTIIDGYCKSGDLAEAFRLF--DEMKLKGL 728
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELY---KKAVKVLNNGYRNVISSLLKLDDLESAE 174
+S V TL + +DV R ++ KK + +I+ + K E
Sbjct: 729 VPDSF--VYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786
Query: 175 KIFEEWESQALCYDTRIPN-----FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229
++ + + PN +ID C+ G LE A+ L + + V ++
Sbjct: 787 EVLNRLMDGSFDRFGK-PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTS 845
Query: 230 LATGYRQNSQIHKAVEAMKKVLAA 253
L GY + + + + +AA
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAA 869
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V YN M+ K GN E L H+M+ + TY + L+ Y + +
Sbjct: 806 VTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDE 865
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAML 107
A + D ++Y+ + N + K G+ KAL ++
Sbjct: 866 AIA-AGIEPDHIMYSVIINAFLKEGMTTKALVLV 898
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 27/197 (13%)
Query: 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
E+ V + N+ Y +I LLK + ++A+ + E S + + + I V + G
Sbjct: 302 EMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEG 361
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE---AMKK---VLAAYQ-- 255
++EKA+ L + G +++ L GY + + + E MKK V++ Y
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421
Query: 256 TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP-----TDLQDKLLDNVQN 310
T+VK S GD+ GA N ++ + G P T L L N +
Sbjct: 422 TVVKGMCS-------------SGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRF 468
Query: 311 GKSNLETLRELYGNSLA 327
G + + L+E+ +A
Sbjct: 469 GDA-MRVLKEMKEQGIA 484
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/294 (17%), Positives = 116/294 (39%), Gaps = 14/294 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL Y+ ++ K E SL+ EM+ G++ D +TY + + +
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
++ M + + +Y K G+++KA A+ + I + A
Sbjct: 332 KGLVHEM-VSHGINIKPYMYDCCICVMSKEGVMEKAKALF---DGMIASGLIPQA-QAYA 386
Query: 128 TLYGKYGKKDDVLRIWELY----KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+L Y ++ +V + +EL K+ + + Y V+ + DL+ A I +E +
Sbjct: 387 SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIAS 446
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ I LI + +N A ++ K +G + + L G + ++ +A
Sbjct: 447 GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506
Query: 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ +++ KP+ + A + + + + A+ +++ + + G +P
Sbjct: 507 RSFLVEMVEN-----GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLP 555
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 145/299 (48%), Gaps = 21/299 (7%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+DLG +T N ML LY + +K+ ++ +E+ + + TY + ++
Sbjct: 252 KMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSN 310
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
D G+++I+ M+++ V LD A + Y GL +KA +LK +++G +
Sbjct: 311 DITGMEQIVETMKSE-GVELDLRARALIARHYASAGLKEKAEKVLK----EMEGESLEEN 365
Query: 123 YNV---ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL---KLDDLESAEKI 176
++ +L++YG ++D+V R+W++ ++ N Y V++++L K+D ++ AE +
Sbjct: 366 RHMCKDLLSVYGYLQREDEVRRVWKICEE-----NPRYNEVLAAILAFGKIDKVKDAEAV 420
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
FE+ + + + + L+ VY + ++ + ++LV G I +W + Y +
Sbjct: 421 FEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVE 480
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ KA ++ K + + Q KP + S + + GD+ E + + G+
Sbjct: 481 AGEVEKAESSLSKAIQSKQI----KPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGY 535
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 128/282 (45%), Gaps = 7/282 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN M+ Y K GN E+ + + ++ E G+ D +TY + + Y D + K+ M
Sbjct: 221 YNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMP 280
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
+ V Y + +G +D+A+ + K ++ V + +I +L G K
Sbjct: 281 LK-GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERK 339
Query: 136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195
+ + + E+ + +K + Y +I SL E A ++ + + L + N L
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNAL 399
Query: 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ 255
I+ YC+ G++E A ++V + + + +++ L GY + S +HKA+ + K+L
Sbjct: 400 INGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLER-- 456
Query: 256 TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
K P V + + +D G+ A + L+ND+G +P
Sbjct: 457 ---KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 11/255 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + + V YNS++ ++GNF+ L+ M + G+ D++TY + + +
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Query: 61 ASDHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ E + +E +PNV V+Y + +GY K G +D+A ML+K K
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNV----VMYTALIDGYCKAGKVDEAHLMLEKMLS--KNC 563
Query: 118 KVNS-AYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
NS +N ++ GK K+ L ++ K ++ + +I LLK D + A
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
F++ S D I YCR G L AE+++ + G + ++ L GY
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYG 683
Query: 236 QNSQIHKAVEAMKKV 250
Q + A + +K++
Sbjct: 684 DLGQTNFAFDVLKRM 698
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 116/253 (45%), Gaps = 8/253 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM+D T Y ++K + + +L+ EMEE GI + +TY + +
Sbjct: 313 KMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372
Query: 63 DHEGIDKIL-TMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E ++L M+E PNV + Y + NGY K G+++ A+ +++ E + K +
Sbjct: 373 KFEKARELLGQMLEKGLMPNV----ITYNALINGYCKRGMIEDAVDVVELMESR-KLSPN 427
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
YN ++ Y K + + ++ ++ V Y ++I + + +SA ++
Sbjct: 428 TRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ L D +ID C++ +E+A +L + + KG +V + L GY + +
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547
Query: 240 IHKAVEAMKKVLA 252
+ +A ++K+L+
Sbjct: 548 VDEAHLMLEKMLS 560
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 10/212 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ Y ++ FEK L+ +M E G+ + TY ++ Y
Sbjct: 346 VKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCK 405
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
E ++ +ME+ PN Y + GY K + KA+ +L K E+
Sbjct: 406 RGMIEDAVDVVELMESRKLSPNTR----TYNELIKGYCKSN-VHKAMGVLNKMLERKVLP 460
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKI 176
V + YN ++ + G D R+ L V + Y ++I SL K +E A +
Sbjct: 461 DVVT-YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
F+ E + + + + LID YC+ G +++A
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/294 (18%), Positives = 109/294 (37%), Gaps = 31/294 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
Q+M G Y + ++ Y + G + +M +M ENG++ D +TY + + Y D
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGD 684
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+L M + + + LL+ K SE ++
Sbjct: 685 LGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKH------LLEMKYGKQKGSEPELCAMSNM 738
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
++ ++ L K + + +V Y +I + ++ +L AEK+F+
Sbjct: 739 MEFDTVVELLEK------------MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHM 786
Query: 181 E-SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ ++ + + N L+ C+ +A +V+ G ++S L G + +
Sbjct: 787 QRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGE 846
Query: 240 IHKAVEAMKKVLAA--YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ + +L Y+ + WK ++ + G G E F EL N
Sbjct: 847 KERGTSVFQNLLQCGYYEDELAWKIIIDGV----------GKQGLVEAFYELFN 890
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 4/209 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M+ L V+YN + + K G + HE+E NG+ D TY + +
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A+ + ++ +E + V + Y T+ GYG G D+A ++L++ ++ KG+ +
Sbjct: 286 ANRLDEAVEMFEHLEKNRRVPCTYA-YNTMIMGYGSAGKFDEAYSLLER--QRAKGSIPS 342
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN ILT K GK D+ L+++E KK + Y +I L + L++A ++ +
Sbjct: 343 VIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDS 402
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ L + R N ++D C++ L++A
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 146/350 (41%), Gaps = 36/350 (10%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM D ++VY S++K ++ G E + +M + D T + A
Sbjct: 471 EKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKA 530
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E + ++A V D Y+ + +G K G ++ + +EQ G +++
Sbjct: 531 GEPEKGRAMFEEIKARRFVP-DARSYSILIHGLIKAGFANETYELFYSMKEQ--GCVLDT 587
Query: 122 -AYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
AYN+++ + K GK + ++ E K K + Y +VI L K+D L+ A +FEE
Sbjct: 588 RAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 647
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S+ + + I + LID + + G +++A ++ KG ++ +W L + +
Sbjct: 648 AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEE 707
Query: 240 IHKAV---EAMK-------------------KVLAAYQTLVKW--------KPSVESLAA 269
I++A+ ++MK KV + V W KPS S
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTT 767
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIP-TDLQDKLLDNVQNGKSNLETL 318
+ G+I A + G +P + + +++ + NG ++
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAF 817
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKIL 71
V+Y+S++ + K G ++ ++ E+ + G+T + YT+ + L A A + +E +
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQ 716
Query: 72 TMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILT 128
+M E PN V Y + NG KV +KA ++ ++Q G K ++ +Y +++
Sbjct: 717 SMKELKCTPN----QVTYGILINGLCKVRKFNKAFVFWQEMQKQ--GMKPSTISYTTMIS 770
Query: 129 LYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWESQALCY 187
K G + +++ +K V ++ Y +I L + A +FEE + L
Sbjct: 771 GLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPI 830
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSW 227
+ L+D +N LE+A + + G+ H +SW
Sbjct: 831 HNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAARSW 871
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 5/236 (2%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMM 74
YNS+L + + NF+ LD ++ EM G T + A+ EG D + M
Sbjct: 101 YNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMR 160
Query: 75 EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134
+ A Y T+ + V D L + ++ +E V+ + ++ + K G
Sbjct: 161 KFKFRPAFS--AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVH-LFTTLIRGFAKEG 217
Query: 135 KKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ D L + E+ ++ Y I S K+ ++ A K F E E+ L D
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYT 277
Query: 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249
+I V C+ L++A + H + R ++ + GY + +A +++
Sbjct: 278 SMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 115/295 (38%), Gaps = 8/295 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M+ GL N M+ K+ ++ ++ EM+ T D T+C+ +
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR 462
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
+ K+ M D + + ++Y ++ + G + + K Q +
Sbjct: 463 VDDAYKVYEKM-LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ-LL 520
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWES 182
N + K G+ + ++E K V + Y +I L+K ++F +
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKE 580
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
Q DTR N +ID +C+ G + KA L+ K KG E V ++ + G + ++ +
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDE 640
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A ++ + L +V ++ +D F G I A +E L KG P
Sbjct: 641 AYMLFEEAKSKRIEL-----NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 138/302 (45%), Gaps = 10/302 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++R G+ T YN++LK Y KTG + +S++ EME+ G++ D +TY + AY +
Sbjct: 327 FEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 386
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A E +L MEA +V + +++ + G+ G K +LK E + G K +
Sbjct: 387 AGRWESARIVLKEMEAG-DVQPNSFVFSRLLAGFRDRGEWQKTFQVLK--EMKSIGVKPD 443
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YNV++ +GK+ D + ++ + + ++ + +I K AE++FE
Sbjct: 444 RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFE 503
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + N +I+ Y + + L+ K +G +V + L Y ++
Sbjct: 504 AMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSG 563
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ + A+E ++++ + V KPS A ++ + G A N ++ G P+
Sbjct: 564 RFNDAIECLEEMKS-----VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPS 618
Query: 299 DL 300
L
Sbjct: 619 LL 620
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 9/216 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ T S++ +G + ++L E+ ++GI Y L Y +
Sbjct: 299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 358
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ +++ ME V+ D Y+ + + Y G + A +LK E + + NS ++ +
Sbjct: 359 ESMVSEMEKR-GVSPDEHTYSLLIDAYVNAGRWESARIVLK--EMEAGDVQPNSFVFSRL 415
Query: 127 LTLY---GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
L + G++ K VL+ E+ VK Y VI + K + L+ A F+ S+
Sbjct: 416 LAGFRDRGEWQKTFQVLK--EMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE 473
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ D N LID +C++G AE + + +G
Sbjct: 474 GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 509
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 106/273 (38%), Gaps = 49/273 (17%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
T + YN+++ + + EK +L+ +M ++G D Y + + ++ ID ++
Sbjct: 196 TPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNK---IDSVM 252
Query: 72 TM-----MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126
+ +E D + LD + + G+ K G KAL +L ++ AK + ++I
Sbjct: 253 LLRLYKEIERD-KLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSII 311
Query: 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
L D R E AE +FEE +
Sbjct: 312 SAL-------ADSGRTLE----------------------------AEALFEELRQSGIK 336
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
TR N L+ Y + G L+ AE++V+ + +G ++ L Y + A
Sbjct: 337 PRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIV 396
Query: 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279
+K++ A +P+ + L F+D G+
Sbjct: 397 LKEMEAG-----DVQPNSFVFSRLLAGFRDRGE 424
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 137/316 (43%), Gaps = 23/316 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M G+ V YN+M+ + + N + S+ EM E G+ + +TY + +
Sbjct: 472 LKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFK 531
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + ++ M A N + VIY T+ NG KVG KA ML+ ++ + +
Sbjct: 532 NKDEQNAWDVINQMNAS-NFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSC 590
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
++YN I+ + K G D + + + K N + ++I+ K + ++ A ++ E
Sbjct: 591 TSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHE 650
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+S L D LID +C+ ++ A L + G +V + L +G+R +
Sbjct: 651 MKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGK 710
Query: 240 IHKAVEAMKKV--------LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ A++ KK+ L Y T++ D +G+I A + L
Sbjct: 711 MDAAIDLYKKMVNDGISCDLFTYTTMI-------------DGLLKDGNINLASDLYSELL 757
Query: 292 DKGFIPTDLQDKLLDN 307
D G +P ++ +L N
Sbjct: 758 DLGIVPDEILHMVLVN 773
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/360 (18%), Positives = 146/360 (40%), Gaps = 50/360 (13%)
Query: 1 MQKMR-DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+++MR LG+ + Y S++ + K GN E+ +M EM GI + ++ Y
Sbjct: 297 LREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYC 356
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM-LKKSEEQIKGAK 118
++ + ME + +A D V+++ + + K ++KA+ ++ +I +
Sbjct: 357 KGNELGKALDLFNRMEEE-GLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSS 415
Query: 119 V----------------------NSAY----------NVILTLYGKYGKKDDVLRIWELY 146
V N ++ N I L+ K GK D ++
Sbjct: 416 VLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMM 475
Query: 147 -KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+K ++ Y N++ + ++ +++ A IF E + L + + LID + +N
Sbjct: 476 EQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDE 535
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL---------AAYQT 256
+ A +++N E + + + G + Q KA E ++ ++ +Y +
Sbjct: 536 QNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNS 595
Query: 257 LVKWKPSVESLAACLDYFKDEGDIGGAEN---FIELLNDKGFIPTDLQDKLLDNVQNGKS 313
++ V + ++ +++ + G + N F L+N GF ++ D L+ KS
Sbjct: 596 IIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLIN--GFCKSNRMDLALEMTHEMKS 653
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 21/223 (9%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI 142
D ++++ K L AL +L++ ++ Y ++ + K G ++ +R+
Sbjct: 273 DGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRV 332
Query: 143 W-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
E+ + + ++++ K ++L A +F E + L D + + +++ +C+
Sbjct: 333 MDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCK 392
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK 261
N +EKA + ++K I S +H ++ K + L +
Sbjct: 393 NMEMEKAIEF--YMRMKSVRIAPSSVL-----------VHTMIQGCLKAESPEAALEIFN 439
Query: 262 PSVESLAA----C---LDYFKDEGDIGGAENFIELLNDKGFIP 297
S ES A C F +G + A +F++++ KG P
Sbjct: 440 DSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEP 482
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 138/290 (47%), Gaps = 4/290 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M+KMR+LG + +VYN ++ G + + + M+ + T TY + A+
Sbjct: 189 MKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEAN 248
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +G+ K M+ V + V Y + + L A A ++ E+ I G
Sbjct: 249 EHNIDGVLKAFDGMK-KAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNW- 306
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
S ++++ LYG+ GK+ ++ R W + + V + Y + ++ +L+ AE+++ E
Sbjct: 307 STLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEM 366
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
++ +T N L+ VYC++GL+EKA + G + + ++ +LA G + +
Sbjct: 367 KNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLM 426
Query: 241 HKAVE--AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288
+A++ M L +++ P +E+ + ++ F ++GD+ +E E
Sbjct: 427 KEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFE 476
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 126/308 (40%), Gaps = 51/308 (16%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+++ G TV YN++L+++ K G + + S++ EMEEN D TY ++AY A
Sbjct: 306 ELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAG 365
Query: 63 ---DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ G+ +++T PN + Y TV + YGK G D+AL + +E G
Sbjct: 366 FSKEAAGVIEMMTKKGVMPNA----ITYTTVIDAYGKAGKEDEALKLFYSMKEA--GCVP 419
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES-AEKIF 177
N+ YN +L+L GK + ++++++ K N N + +L ++ ++F
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVF 479
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
E +S D N LI Y R G + V+ K+ G
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCG------SEVDASKMYGE----------------- 516
Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
T + V + A L+ +GD EN I + KGF P
Sbjct: 517 -----------------MTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKP 559
Query: 298 TDLQDKLL 305
T+ L+
Sbjct: 560 TETSYSLM 567
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V++NSML ++ + +++ + ++ + E+G++ D TY + + Y + ++IL
Sbjct: 632 VIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKT 691
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNSAYNVILTLY-- 130
+E + D V Y TV G+ + GL+ +A+ ML + +E I+ YN ++ Y
Sbjct: 692 LEKS-QLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFT--YNTFVSGYTA 748
Query: 131 -GKYGKKDDVL 140
G + + +DV+
Sbjct: 749 MGMFAEIEDVI 759
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 111/255 (43%), Gaps = 14/255 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M G YN++L + G++ ++++ +M+ G +Y L YA
Sbjct: 516 EMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 575
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL---DKALAMLKKSEEQIKGAKV 119
++ GI++I ++ + + W++ T+ K L ++A + KK G K
Sbjct: 576 NYLGIERIENRIK-EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKK-----HGYKP 629
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ +N +L+++ + D I E + + + Y +++ ++ + AE+I
Sbjct: 630 DMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEIL 689
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
+ E L D N +I +CR GL+++A +++ +G + ++ +GY
Sbjct: 690 KTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAM 749
Query: 238 ---SQIHKAVEAMKK 249
++I +E M K
Sbjct: 750 GMFAEIEDVIECMAK 764
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 120/302 (39%), Gaps = 16/302 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + +V YN ++ Y + G ++ ++ M + G+ + TY T + AY
Sbjct: 339 LKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGK 398
Query: 61 AS-DHEGIDKILTMMEAD--PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + E + +M EA PN Y V + GK ++ + ML + + G
Sbjct: 399 AGKEDEALKLFYSMKEAGCVPNTC----TYNAVLSLLGKKSRSNEMIKML--CDMKSNGC 452
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N A +N +L L G G V R++ E+ + + + +IS+ + A K
Sbjct: 453 SPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASK 512
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
++ E N L++ R G EN+++ K KG + S+ + Y
Sbjct: 513 MYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYA 572
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + +E ++ + Q W L A FK + G+E L G+
Sbjct: 573 KGGN-YLGIERIENRIKEGQIFPSWMLLRTLLLA---NFKCRA-LAGSERAFTLFKKHGY 627
Query: 296 IP 297
P
Sbjct: 628 KP 629
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK-DDVL 140
LD Y T+ + Y + G +KA+ + ++ +E + + YNVIL ++GK G+ +L
Sbjct: 208 LDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVT-YNVILDVFGKMGRSWRKIL 266
Query: 141 RIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199
+ E+ K +K V+S+ + L A++ F E +S T N L+ V+
Sbjct: 267 GVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVF 326
Query: 200 CRNGLLEKA 208
+ G+ +A
Sbjct: 327 GKAGVYTEA 335
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
V YN+++K + + G ++ ++ EM E GI +TY T +S Y I+ ++
Sbjct: 702 VSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIEC 761
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
M A + + + + V +GY + G +A+ + K
Sbjct: 762 M-AKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSK 796
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ +R+ GL+ V YNS++ +Y + G K + ++ +E++ + D +Y T + +
Sbjct: 654 LESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCR 713
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL 100
+ ++L+ M + + Y T +GY +G+
Sbjct: 714 RGLMQEAVRMLSEM-TERGIRPCIFTYNTFVSGYTAMGMF 752
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 33/328 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M G + YN+++ K G +E+ + EM +G++ D TY + L
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D +K+ + M + +V D V ++++ + + + G LDKAL M S ++ N
Sbjct: 353 KGDVVETEKVFSDMRSR-DVVPDLVCFSSMMSLFTRSGNLDKAL-MYFNSVKEAGLIPDN 410
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
Y +++ Y + G + + E+ ++ + Y ++ L K L A+K+F E
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+AL D+ LID +C+ G L+ A L K K + V ++ L G+ +
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 240 IHKAVE-----AMKKVLA---AYQTLVK--------------W--------KPSVESLAA 269
I A E K++L +Y LV W KP+V +
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNS 590
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIP 297
+ + G+ E+F+E + +GF+P
Sbjct: 591 MIKGYCRSGNASDGESFLEKMISEGFVP 618
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 6/295 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+++ GL V+Y +++ Y + G +L +EM + G D TY T L
Sbjct: 401 VKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKM 460
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
DK+ M + + D + +G+ K+G L A+ + +K +E+ V Y
Sbjct: 461 LGEADKLFNEM-TERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDV-VTY 518
Query: 124 NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N +L +GK G D IW ++ K + Y ++++L L A ++++E S
Sbjct: 519 NTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMIS 578
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ + I N +I YCR+G E+ + +G S+ L G+ + + K
Sbjct: 579 KNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSK 638
Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A +KK+ LV P V + + L F + + AE + + ++G P
Sbjct: 639 AFGLVKKMEEEQGGLV---PDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNP 690
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
Q++ G+ N M+ K G EK+ + + +++E G+ D TY T +SAY+
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYA--TVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
E + +M A P +Y TV NG K G ++A K+ ++ + +
Sbjct: 284 GLME---EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA----KEVFAEMLRSGL 336
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYK--KAVKVLNN--GYRNVISSLLKLDDLESAEK 175
+ +L + KK DV+ +++ ++ V+ + + +++S + +L+ A
Sbjct: 337 SPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 396
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
F + L D I LI YCR G++ A NL N +G + V ++ + G
Sbjct: 397 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLC 456
Query: 236 QNSQIHKA 243
+ + +A
Sbjct: 457 KRKMLGEA 464
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/129 (18%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+S +++++ Y + K + + L + K V + +I SL+++ +E A +++
Sbjct: 165 DSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQ 224
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + N +++ C++G +EK ++ + KG + ++ L + Y
Sbjct: 225 EISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG 284
Query: 239 QIHKAVEAM 247
+ +A E M
Sbjct: 285 LMEEAFELM 293
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 44/282 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G+ + +NS+L + + G +E +L EM I D ++Y T L A
Sbjct: 329 EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGG 388
Query: 63 DHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAM------------- 106
+ +IL M PNV V Y+TV +G+ K G D+AL +
Sbjct: 389 QMDLAFEILAQMPVKRIMPNV----VSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444
Query: 107 ------------LKKSEEQIK--------GAKVNS-AYNVILTLYGKYGKKDDVLRIWEL 145
+ +SEE + G K + YN +L YGK GK D+V +++
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504
Query: 146 YKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203
K+ VL N Y +I K + A +IF E++S L D + + LID C+NG
Sbjct: 505 MKRE-HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNG 563
Query: 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
L+ A +L++ +G +V ++ + + +++ + ++ +
Sbjct: 564 LVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSAD 605
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M +G+ + V YN++L Y K G ++++ + EM+ + + TY T + Y+
Sbjct: 467 LREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSK 526
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKV 119
++ +I ++ + D V+Y+ + + K GL+ A++++ + ++E I V
Sbjct: 527 GGLYKEAMEIFREFKS-AGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVV 585
Query: 120 NSAYNVILTLYGKYGKKD 137
YN I+ +G+ D
Sbjct: 586 T--YNSIIDAFGRSATMD 601
Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 131/328 (39%), Gaps = 46/328 (14%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G T +++++ Y ++G E+ S+ + M+E G+ + TY +A DA G+
Sbjct: 263 GYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTY----NAVIDACGKGGM 318
Query: 68 D-----KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
+ K M+ + V D + + ++ + GL + A + + + V S
Sbjct: 319 EFKQVAKFFDEMQRN-GVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFS- 376
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNN--GYRNVISSLLKLDDLESAEKIFEE 179
YN +L K G+ D I L + VK ++ N Y VI K + A +F E
Sbjct: 377 YNTLLDAICKGGQMDLAFEI--LAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGE 434
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS- 238
+ D N L+ +Y + G E+A +++ G + V ++ L GY +
Sbjct: 435 MRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGK 494
Query: 239 --QIHKAVEAMKKV-----LAAYQTLVK-------WKPSVESL---------------AA 269
++ K MK+ L Y TL+ +K ++E +A
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554
Query: 270 CLDYFKDEGDIGGAENFIELLNDKGFIP 297
+D G +G A + I+ + +G P
Sbjct: 555 LIDALCKNGLVGSAVSLIDEMTKEGISP 582
Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 105/269 (39%), Gaps = 19/269 (7%)
Query: 26 TGNFEKLDSLMHEMEENGITYDRYTYCTR-LSAYADASDHEGIDKILTMMEADPNVA--L 82
+G+ E SLM E D TY R L + G + E N L
Sbjct: 176 SGDDEMFHSLMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKL 235
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--AYNVILTLYGKYGKKDDVL 140
+ +T+G YGKV + + E G N+ A++ +++ YG+ G ++ +
Sbjct: 236 ASAMISTLGR-YGKVTIAKRIF------ETAFAGGYGNTVYAFSALISAYGRSGLHEEAI 288
Query: 141 RIWELYKK-AVKVLNNGYRNVISSLLKLD-DLESAEKIFEEWESQALCYDTRIPNFLIDV 198
++ K+ ++ Y VI + K + + K F+E + + D N L+ V
Sbjct: 289 SVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAV 348
Query: 199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV 258
R GL E A NL + + E V S+ L + Q+ A E + A +
Sbjct: 349 CSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEIL-----AQMPVK 403
Query: 259 KWKPSVESLAACLDYFKDEGDIGGAENFI 287
+ P+V S + +D F G A N
Sbjct: 404 RIMPNVVSYSTVIDGFAKAGRFDEALNLF 432
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+KM LG+ VYN ++ K+G+ EK + L+ EMEE G+ D +TY T +S Y
Sbjct: 191 FKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCK 250
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S H + ME VA + V Y + +G+ + G + +A + ++ ++ + V
Sbjct: 251 KSMHFEALSVQDRMERS-GVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVT 309
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG---YRNVISSLLKLDDLESAEKIF 177
Y ++ Y + D+ LR+ E+ + + + G Y +++ L + + A ++
Sbjct: 310 --YTTLIDGYCRMNDIDEALRLREVMES--RGFSPGVVTYNSILRKLCEDGRIREANRLL 365
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
E + + D N LI+ YC K E++V+ K+K + I
Sbjct: 366 TEMSGKKIEPDNITCNTLINAYC------KIEDMVSAVKVKKKMI 404
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 5/212 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G + V YNS+L+ + G + + L+ EM I D T T ++AY D
Sbjct: 333 MESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIED 392
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA- 122
K+ M + + LD Y + +G+ KV L+ A L E KG A
Sbjct: 393 MVSAVKVKKKM-IESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIE--KGFSPGYAT 449
Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWE 181
Y+ ++ + K+D++ ++ E ++K + YR +I + KL+ ++ A+ +FE E
Sbjct: 450 YSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFESME 509
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
+ L D+ I + Y R G + +A L +
Sbjct: 510 KKGLVGDSVIFTTMAYAYWRTGKVTEASALFD 541
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 28/215 (13%)
Query: 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK-- 151
Y K G+++ ++ + EQI+ + L K+ +W+++KK VK
Sbjct: 143 YAKAGMINDSIVVF----EQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLG 198
Query: 152 VLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
V+ N Y ++ + K D E AEK+ E E + + D N LI VYC+ + +A
Sbjct: 199 VVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEAL 258
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV-------LAAYQTLVKWKP 262
++ + + G ++ ++ G+ + ++ +A +++ Y TL+
Sbjct: 259 SVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTLI---- 314
Query: 263 SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
D + DI A E++ +GF P
Sbjct: 315 ---------DGYCRMNDIDEALRLREVMESRGFSP 340
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 126/269 (46%), Gaps = 14/269 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYY-KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+ +M + G+ YN+++ +Y K+ +FE L S+ ME +G+ + TY + + ++
Sbjct: 226 LSEMEEKGVFPDIFTYNTLISVYCKKSMHFEAL-SVQDRMERSGVAPNIVTYNSFIHGFS 284
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
++ E +V + V Y T+ +GY ++ +D+AL + + E + V
Sbjct: 285 REGRMREATRLFR--EIKDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGV 342
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ YN IL + G+ + R+ E+ K ++ N +I++ K++D+ SA K+ +
Sbjct: 343 VT-YNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKK 401
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-YRQN 237
+ L D LI +C+ LE A+ + KG ++ +L G Y QN
Sbjct: 402 KMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQN 461
Query: 238 SQ--IHKAVEAMKKV-----LAAYQTLVK 259
Q I K +E +K +A Y+ L++
Sbjct: 462 KQDEITKLLEEFEKRGLCADVALYRGLIR 490
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 126/267 (47%), Gaps = 13/267 (4%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M ++G T + N+++ G L+ M E G + TY L+ +
Sbjct: 183 RMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSG 242
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS- 121
++L ME + N+ LD V Y+ + +G K G LD A + +E +IKG K +
Sbjct: 243 QTALAMELLRKME-ERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF--NEMEIKGFKADII 299
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ + G+ DD ++ ++ K+ + + +I S +K L A+++ +E
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + +T N LID +C+ LE+A +V+ KG + + ++ L GY + ++I
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Query: 241 HKAVE-----AMKKVLA---AYQTLVK 259
+E +++ V+A Y TLV+
Sbjct: 420 DDGLELFREMSLRGVIANTVTYNTLVQ 446
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 131/302 (43%), Gaps = 21/302 (6%)
Query: 5 RDLGLAR---TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
RD+ +R T + +N + KT +E + +L +ME GI + YT ++ +
Sbjct: 77 RDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRC 136
Query: 62 SD----HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ KI+ + +P D VI+ T+ NG + +AL ++ + E
Sbjct: 137 RKLSYAFSTMGKIMK-LGYEP----DTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191
Query: 118 KVNSAYNVI--LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ + ++ L L GK D V+ I + + + Y V++ + K A +
Sbjct: 192 TLITLNTLVNGLCLNGKVS--DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAME 249
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ + E + + D + +ID C++G L+ A NL N ++KG + + ++ L G+
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFC 309
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + ++ ++ K P+V + + +D F EG + A+ ++ + +G
Sbjct: 310 NAGRWDDGAKLLRDMIKR-----KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI 364
Query: 296 IP 297
P
Sbjct: 365 AP 366
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 25/262 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM + + V Y+ ++ K G+ + +L +EME G D TY T + + +
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A + K+L M + PNV V ++ + + + K G L +A +LK E +G
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNV----VTFSVLIDSFVKEGKLREADQLLK--EMMQRGI 364
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIWELYKK--------AVKVLNNGYRNVISSLLKLD 168
N+ YN ++ + K + ++ +++ +L +L NGY K +
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY-------CKAN 417
Query: 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228
++ ++F E + + +T N L+ +C++G LE A+ L + + S+
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477
Query: 229 YLATGYRQNSQIHKAVEAMKKV 250
L G N ++ KA+E K+
Sbjct: 478 ILLDGLCDNGELEKALEIFGKI 499
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 106/238 (44%), Gaps = 5/238 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + YN+++ + G ++ L+ +M + I+ + T+ + ++
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVI 126
D++L M +A + + Y ++ +G+ K L++A+ M+ KG + +N++
Sbjct: 353 DQLLKEM-MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS--KGCDPDIMTFNIL 409
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ Y K + DD L ++ E+ + V Y ++ + LE A+K+F+E S+ +
Sbjct: 410 INGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
D L+D C NG LEKA + + E+ + + + G S++ A
Sbjct: 470 RPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDA 527
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 133/297 (44%), Gaps = 13/297 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KMR G+ V Y+ ++ K G + + M + G+ + TY T L YA
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ +L +M + + D +++ + Y K G +D+A+ + K +Q G N
Sbjct: 349 KGALVEMHGLLDLMVRN-GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ--GLNPN 405
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ Y ++ + K G+ +D + +E + + + N Y ++I L + E AE++
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 465
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + +C +T N +ID +C+ G + ++E L G + +V ++ L GY
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAG 525
Query: 239 QIHKAVEAMKKVLAA--------YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287
++ +A++ + +++ Y TL+ + + L FK+ G + + I
Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 582
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Query: 5 RDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64
R G V Y +++ ++K G+ +K S HEM + GI D TY + ++A A
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247
Query: 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
+ ++L M + V D + Y ++ +GY G +A+ LKK V + Y+
Sbjct: 248 DKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVT-YS 305
Query: 125 VILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+++ K G+ + +I++ + K+ +K Y ++ L + +
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
+ D + + LI Y + G +++A + + + +G
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 401
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 5/210 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M +GL TV Y++++ Y K E L EME +G++ D TY L
Sbjct: 534 LSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ K L + + ++ Y + +G K L D AL M + + K+
Sbjct: 594 -TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL--CLMDLKLE 650
Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFE 178
+ +N+++ K G+ D+ ++ + V N YR + +++ LE +++F
Sbjct: 651 ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFL 710
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKA 208
E D+ + NF++ + G + +A
Sbjct: 711 SMEDNGCTVDSGMLNFIVRELLQRGEITRA 740
Score = 38.5 bits (88), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 4/208 (1%)
Query: 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD--PNVALDWVIY 87
+ +D ++ M E G + ++Y L D + + ++L MM D D V Y
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LY 146
TV NG+ K G DKA + + ++ V + YN I+ K D + + +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVT-YNSIIAALCKAQAMDKAMEVLNTMV 258
Query: 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
K V Y +++ + A ++ S + D + L+D C+NG
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGY 234
+A + + +G + + ++ L GY
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGY 346
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 5/141 (3%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y VI+ K D + A + E + + D N +I C+ ++KA ++N
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
G ++ + GY + Q +A+ +KK+ + +P V + + +DY
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD-----GVEPDVVTYSLLMDYLCK 313
Query: 277 EGDIGGAENFIELLNDKGFIP 297
G A + + +G P
Sbjct: 314 NGRCMEARKIFDSMTKRGLKP 334
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 122/316 (38%), Gaps = 35/316 (11%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN---GITYDRYTYCTRLSA 57
+++M +LG YN +LK ++ L+H M ++ G D +Y T ++
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205
Query: 58 YADASD--------HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
+ D HE +D+ + D V Y ++ K +DKA+ +L
Sbjct: 206 FFKEGDSDKAYSTYHEMLDR---------GILPDVVTYNSIIAALCKAQAMDKAMEVLNT 256
Query: 110 SEEQIKGAKVNSA--YNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNNGYRNVISSLLK 166
+K + YN IL Y G+ K+ + + ++ V+ Y ++ L K
Sbjct: 257 ---MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226
A KIF+ + L + L+ Y G L + L++ G IH
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG--IHPDH 371
Query: 227 WYY--LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284
+ + L Y + ++ +A+ K+ Q L P+ + A + G + A
Sbjct: 372 YVFSILICAYAKQGKVDQAMLVFSKM--RQQGL---NPNAVTYGAVIGILCKSGRVEDAM 426
Query: 285 NFIELLNDKGFIPTDL 300
+ E + D+G P ++
Sbjct: 427 LYFEQMIDEGLSPGNI 442
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 145/307 (47%), Gaps = 27/307 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA-S 62
M+ GL V YN+++ Y K G+ ++ ++ M++ + D TY ++ +A S
Sbjct: 266 MKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGS 325
Query: 63 DHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
EG++ +M+A ++ L D V Y T+ +G ++GL +A ++++ E G K N
Sbjct: 326 MREGLE----LMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMEND--GVKAN 379
Query: 121 SA-YNVILTLYGKYGKKDDVLR----IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+N+ L K K++ V R + +++ + ++ Y +I + LK+ DL A +
Sbjct: 380 QVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVT--YHTLIKAYLKVGDLSGALE 437
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E + + +T N ++D C+ L++A NL+N +G + ++ L G+
Sbjct: 438 MMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFF 497
Query: 236 QNSQIHKAVEA---MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
+ ++ KA+E MKK VK P+V + + + G A + L +
Sbjct: 498 REEKVEKALEMWDEMKK--------VKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAE 549
Query: 293 KGFIPTD 299
G +P D
Sbjct: 550 SGLLPDD 556
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 4/247 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
M M+ L L V YN+++ ++ G + LM +ME +G+ ++ T+ L
Sbjct: 333 MDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCK 392
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
E + + + + + D V Y T+ Y KVG L AL M+++ + KG K+N
Sbjct: 393 EEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQ--KGIKMN 450
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ N IL K K D+ + +K+ V Y +I + + +E A ++++
Sbjct: 451 TITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWD 510
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + N LI C +G E A + G ++ + GY +
Sbjct: 511 EMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEG 570
Query: 239 QIHKAVE 245
++ KA E
Sbjct: 571 RVEKAFE 577
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 56 SAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK 115
S+++ +S E D ++ + V+L+ + + NGY G L+ AL ML++ + K
Sbjct: 181 SSFSISSAREVFDDMVKI-----GVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFK 235
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAE 174
N YN IL K G+ D+ + KK V N Y N++ KL L+ A
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAF 295
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
+I E + + D N LI+ C G + + L++ K
Sbjct: 296 QIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMK 337
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
TV YN+M+ + K ++ L+ EMEE G+ DR+TY + +S + D++L
Sbjct: 625 TVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELL 683
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 111/231 (48%), Gaps = 4/231 (1%)
Query: 23 YYKTGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA 81
Y ++GN +K E E + G+ + TY + ++ YA D EG+ ++L +M ++ V+
Sbjct: 235 YCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLM-SERGVS 293
Query: 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLR 141
+ V Y ++ GY K GL+++A + + +E+ K Y V++ Y + G+ D +R
Sbjct: 294 RNVVTYTSLIKGYCKKGLMEEAEHVFELLKEK-KLVADQHMYGVLMDGYCRTGQIRDAVR 352
Query: 142 IWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200
+ + + + V+ ++I+ K L AE+IF +L D N L+D YC
Sbjct: 353 VHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYC 412
Query: 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251
R G +++A L + K V ++ L GY + H + K +L
Sbjct: 413 RAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMML 463
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 105/241 (43%), Gaps = 38/241 (15%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M ++G+ T + NS++ Y K+G + + + M + + D +T
Sbjct: 357 MIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHT------------- 403
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
Y T+ +GY + G +D+AL + + ++ V + Y
Sbjct: 404 -----------------------YNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMT-Y 439
Query: 124 NVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
N++L Y + G DVL +W++ K+ V ++ +L KL D A K++E +
Sbjct: 440 NILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLA 499
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
+ L DT N +I C+ + +A+ ++++ + + V+++ L+ GY + + +
Sbjct: 500 RGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKE 559
Query: 243 A 243
A
Sbjct: 560 A 560
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT 53
G+ V YN+++K K GN ++ L+H++ + GIT + TY T
Sbjct: 785 GIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNT 830
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 123/316 (38%), Gaps = 25/316 (7%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y ++ YYK GN ++ ++ ME GI Y T +S + ++ +
Sbjct: 544 YQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELR 603
Query: 76 A---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132
A P VA Y + G+ +G++DKA A + E KG +N N+ +
Sbjct: 604 ARGLTPTVA----TYGALITGWCNIGMIDKAYATCFEMIE--KGITLN--VNICSKIANS 655
Query: 133 YGKKDDVLRIWELYKKAV--KVLNNGYRNV-----ISSLLKLDDLESAEKIFEEWESQAL 185
+ D + L +K V +L GY+++ S+ L + AE + + L
Sbjct: 656 LFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLL 715
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK-SWYYLATGYRQNSQIHKAV 244
+ + N I C+ G LE A L + R I + ++ L G I+KA
Sbjct: 716 VPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAF 775
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ-DK 303
L L P++ + A + G++ A+ + L KG P + +
Sbjct: 776 -----TLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNT 830
Query: 304 LLDNVQNGKSNLETLR 319
L+D + + E +R
Sbjct: 831 LIDGLVKSGNVAEAMR 846
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 129/303 (42%), Gaps = 17/303 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGN-FEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
+KM + G T + YN +L ++ K G + K+ SL+ +M+ +GI D YTY T ++
Sbjct: 231 FKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCK 290
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
S H+ ++ M+A + D V Y + + YGK +A+ +L +E + G
Sbjct: 291 RGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVL--NEMVLNGFSP 347
Query: 120 N-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ YN +++ Y + G D+ + + ++ +K K Y ++S + +ESA IF
Sbjct: 348 SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIF 407
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
EE + + N I +Y G + + + + G + +W L + QN
Sbjct: 408 EEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQN 467
Query: 238 ---SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
S++ + MK+ + P E+ + + G A + D G
Sbjct: 468 GMDSEVSGVFKEMKR--------AGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG 519
Query: 295 FIP 297
P
Sbjct: 520 VTP 522
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 127/293 (43%), Gaps = 12/293 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL+ V +N++L ++ + G ++ + EM+ G +R T+ T +SAY+ E
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVI 126
+ M D V D Y TV + G+ +++ +L + E+ K N Y +
Sbjct: 509 MTVYRRM-LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED--GRCKPNELTYCSL 565
Query: 127 LTLYGKYGKKDDVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184
L Y GK+ ++ E+Y ++ + ++ K D L AE+ F E + +
Sbjct: 566 LHAYAN-GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERG 624
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
D N ++ +Y R ++ KA ++++ K +G + ++ L + +++ K+
Sbjct: 625 FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSE 684
Query: 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
E ++++LA KP + S + + + A + + G +P
Sbjct: 685 EILREILAK-----GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVP 732
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDV 139
+LD Y ++ + + G +A+ + KK EE G K YNVIL ++GK G +
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEED--GCKPTLITYNVILNVFGKMGTPWNK 262
Query: 140 LRIWELYKKAVKVLNNGYR-NVISSLLKLDDL-ESAEKIFEEWESQALCYDTRIPNFLID 197
+ K+ + + Y N + + K L + A ++FEE ++ YD N L+D
Sbjct: 263 ITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD 322
Query: 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257
VY ++ ++A ++N L G + ++ L + Y ++ + +A+E +K +A T
Sbjct: 323 VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME-LKNQMAEKGT- 380
Query: 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KP V + L F+ G + A + E + + G P
Sbjct: 381 ---KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP 417
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 11/210 (5%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G + + V YNS++ Y + G ++ L ++M E G D +TY T LS + A E
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESA 403
Query: 68 DKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAY 123
I M PN+ + YG G + + + E + G + +
Sbjct: 404 MSIFEEMRNAGCKPNIC----TFNAFIKMYGNRGKFTEMMKIF--DEINVCGLSPDIVTW 457
Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDLESAEKIFEEWES 182
N +L ++G+ G +V +++ K+A V + +IS+ + E A ++
Sbjct: 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLD 517
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
+ D N ++ R G+ E++E ++
Sbjct: 518 AGVTPDLSTYNTVLAALARGGMWEQSEKVL 547
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE-- 65
G+ + YN+++ Y + + EM +GI D TY T + +YA S E
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEA 753
Query: 66 -GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103
G+ + + PN Y ++ +GY K+ D+A
Sbjct: 754 IGVVRYMIKHGCRPNQN----TYNSIVDGYCKLNRKDEA 788
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 122/252 (48%), Gaps = 5/252 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M ++G + N+++ +G + L+ +M E G + TY L+
Sbjct: 181 VDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCK 240
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L ME + N+ LD V Y+ + +G K G LD A + +E ++KG N
Sbjct: 241 SGQTALAMELLRKME-ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF--NEMEMKGITTN 297
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
YN+++ + G+ DD ++ ++ K+ + + +I S +K L AE++ +
Sbjct: 298 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 357
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + DT LID +C+ L+KA +V+ KG + +++++ L GY + +
Sbjct: 358 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 417
Query: 239 QIHKAVEAMKKV 250
+I +E +K+
Sbjct: 418 RIDDGLELFRKM 429
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 136/305 (44%), Gaps = 27/305 (8%)
Query: 5 RDLGLAR---TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
RD+ +R T + ++ + KT ++ + +L +ME GI ++ YT ++ +
Sbjct: 77 RDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRC 136
Query: 62 SD----HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ KI+ + +PN + ++T+ NG G + +AL ++ + E G
Sbjct: 137 RKLCLAFSAMGKIIK-LGYEPNT----ITFSTLINGLCLEGRVSEALELVDRMVEM--GH 189
Query: 118 K-----VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172
K +N+ N L L GK + + +L I ++ + + Y V++ + K
Sbjct: 190 KPDLITINTLVNG-LCLSGK--EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTAL 246
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
A ++ + E + + D + +ID C++G L+ A NL N ++KG ++ ++ L
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIG 306
Query: 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
G+ + + ++ ++ K P+V + + +D F EG + AE + +
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKR-----KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH 361
Query: 293 KGFIP 297
+G P
Sbjct: 362 RGIAP 366
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 133/333 (39%), Gaps = 43/333 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM + + V Y+ ++ K G+ + +L +EME GIT + TY + + +
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 310
Query: 61 ASDHEGIDKILTMM---EADPNV-------------------------------ALDWVI 86
A + K+L M + +PNV A D +
Sbjct: 311 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 370
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIW-E 144
Y ++ +G+ K LDKA M+ KG N +N+++ Y K + DD L ++ +
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVS--KGCDPNIRTFNILINGYCKANRIDDGLELFRK 428
Query: 145 LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204
+ + V Y +I +L L A+++F+E S+ + + L+D C NG
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488
Query: 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
EKA + + E+ + + + G S++ A + L L KP V
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD-----LFCSLPLKGVKPGV 543
Query: 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ + +G + AE + + G P
Sbjct: 544 KTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAP 576
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 115/283 (40%), Gaps = 14/283 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM + G V Y +L + K+G L+ +MEE I D Y +
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ + ME + + + Y + G+ G D +L+ + IK K+N
Sbjct: 276 HGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGAKLLR---DMIK-RKIN 330
Query: 121 S---AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
++V++ + K GK + + E+ + + Y ++I K + L+ A ++
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
+ S+ + R N LI+ YC+ ++ L L+G ++ L G+ +
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279
+++ A E +++++ K P++ + LD D G+
Sbjct: 451 LGKLNVAKELFQEMVSR-----KVPPNIVTYKILLDGLCDNGE 488
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 77/225 (34%), Gaps = 44/225 (19%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM G+ TV YN++++ + + G L EM + + TY L D
Sbjct: 427 RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDN 486
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ E KAL + +K E+ +
Sbjct: 487 GESE------------------------------------KALEIFEKIEKSKMELDI-G 509
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
YN+I+ K DD W+L+ K VK Y +I L K L AE +F
Sbjct: 510 IYNIIIHGMCNASKVDDA---WDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222
+ E D N LI + +G K+ L+ K G +
Sbjct: 567 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSV 611
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 138/301 (45%), Gaps = 14/301 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M D G+ T +++ + G EK L+ E GI + YTY T ++AY
Sbjct: 212 FRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVK 271
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D G++ +L +M+ D V + V Y + K G + A + + E+ +
Sbjct: 272 QRDFSGVEGVLKVMKKD-GVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRER----GIE 326
Query: 121 SAYNVILTLYGKYGKKDDVLRIW----ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
S +V +L +K ++ R + EL +K + + Y +I + K+ ++ +AE +
Sbjct: 327 SDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEIL 386
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
E +S+ + + N LID YCR G++++A + + + KG + V + +A+ + +
Sbjct: 387 MNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNR 446
Query: 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296
+ +A + + +++ K S S +D + EG++ A+ ++ KG
Sbjct: 447 LKRYDEAKQWLFRMMEG-----GVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQ 501
Query: 297 P 297
P
Sbjct: 502 P 502
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 108/246 (43%), Gaps = 36/246 (14%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRL----- 55
++ M+ G+ V Y +++L K G + L EM E GI D + Y + +
Sbjct: 282 LKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCR 341
Query: 56 ---------------------SAYADASDHEGIDKILTMMEAD--------PNVALDWVI 86
S+Y + +G+ K+ M A+ V + V+
Sbjct: 342 KGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV 401
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLR-IWEL 145
+ T+ +GY + G++D+A + E++ A V + N I + + + + D+ + ++ +
Sbjct: 402 FNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTC-NTIASCFNRLKRYDEAKQWLFRM 460
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+ VK+ Y N+I K ++E A+++F E S+ + + N +I YC+ G +
Sbjct: 461 MEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKI 520
Query: 206 EKAENL 211
++A L
Sbjct: 521 KEARKL 526
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M + G+ +TV Y +++ +Y K GN E+ L EM G+ + TY + AY
Sbjct: 459 RMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQG 518
Query: 63 DHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ K+ MEA DP D Y ++ +G +D+A+ + SE +KG
Sbjct: 519 KIKEARKLRANMEANGMDP----DSYTYTSLIHGECIADNVDEAMRLF--SEMGLKGLDQ 572
Query: 120 NSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSL 164
NS Y V+++ K GK D+ ++ E+ +K + N Y +I S+
Sbjct: 573 NSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGSM 619
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 15/275 (5%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+RD G TV YN ++ Y + + ++ ++M+E G DR TYCT + +A A
Sbjct: 391 VRD-GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGF 449
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
+ + M+A ++ D Y+ + N GK G L A + + +Q G N
Sbjct: 450 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ--GCTPNLVT 506
Query: 123 YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
YN+++ L+ K + L+++ ++ + Y V+ L LE AE +F E +
Sbjct: 507 YNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ 566
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ D + L+D++ + G +EKA G +V + L + + + ++I
Sbjct: 567 QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIA 626
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVES----LAACLD 272
+A E ++ +LA + +PS+++ L+ C D
Sbjct: 627 EAYELLQNMLA-----LGLRPSLQTYTLLLSCCTD 656
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+ +++LGL N +LK GN L + G +D +TY T + A
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGN--ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377
Query: 62 SDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
I+K+L M D PN V Y + + YG+ L++A+ + + +E G K
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNT----VTYNRLIHSYGRANYLNEAMNVFNQMQE--AGCK 431
Query: 119 VNS-AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
+ Y ++ ++ K G D + +++ + + Y +I+ L K L +A K+
Sbjct: 432 PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKL 491
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217
F E Q + N ++D++ KA N N KL
Sbjct: 492 FCEMVDQGCTPNLVTYNIMMDLH------AKARNYQNALKL 526
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 9/246 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+ TVVY +++ + K G+ +EM IT D TY +S + D
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVI 126
K+ M + D V + + NGY K G + A + + G N Y +
Sbjct: 406 GKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA--GCSPNVVTYTTL 462
Query: 127 LTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
+ K G D + E++K ++ Y ++++ L K ++E A K+ E+E+ L
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522
Query: 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
DT L+D YC++G ++KA+ ++ KG + + ++ L G+ +H +E
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF----CLHGMLE 578
Query: 246 AMKKVL 251
+K+L
Sbjct: 579 DGEKLL 584
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 141/342 (41%), Gaps = 14/342 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M+ GL + +Y S++ L + + + EM GI D Y T + +
Sbjct: 304 IEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK 363
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D K M + ++ D + Y + +G+ ++G + +A + E KG + +
Sbjct: 364 RGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFH--EMFCKGLEPD 420
Query: 121 SA-YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFE 178
S + ++ Y K G D R+ +A N Y +I L K DL+SA ++
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E L + N +++ C++G +E+A LV + G ++ L Y ++
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 540
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
++ KA E +K++L +P++ + ++ F G + E + + KG P
Sbjct: 541 EMDKAQEILKEMLGK-----GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 595
Query: 299 DLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDT 340
L ++NL+ +Y + + GP+G T
Sbjct: 596 ATTFNSLVKQYCIRNNLKAATAIYKDMCSRG----VGPDGKT 633
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 119/250 (47%), Gaps = 7/250 (2%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
M G + V Y +++ K G+ + + L+HEM + G+ + +TY + ++ + +
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SA 122
E K++ EA + D V Y T+ + Y K G +DKA +LK E KG +
Sbjct: 507 IEEAVKLVGEFEA-AGLNADTVTYTTLMDAYCKSGEMDKAQEILK--EMLGKGLQPTIVT 563
Query: 123 YNVILTLYGKYGKKDDVLRI--WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+NV++ + +G +D ++ W L K + + +++ ++L++A I+++
Sbjct: 564 FNVLMNGFCLHGMLEDGEKLLNWML-AKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 622
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
S+ + D + L+ +C+ +++A L K KG + V ++ L G+ + +
Sbjct: 623 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKF 682
Query: 241 HKAVEAMKKV 250
+A E ++
Sbjct: 683 LEAREVFDQM 692
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 119/325 (36%), Gaps = 45/325 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ ++G+ YN ++ + G ++ L+ ME G T D +Y
Sbjct: 234 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISY--------- 284
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+TV NGY + G LDK +++ + KG K N
Sbjct: 285 ---------------------------STVVNGYCRFGELDKVWKLIEVMKR--KGLKPN 315
Query: 121 S-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
S Y I+ L + K + + E+ ++ + Y +I K D+ +A K F
Sbjct: 316 SYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFY 375
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S+ + D +I +C+ G + +A L + KG E ++ L GY +
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435
Query: 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298
+ A ++ A P+V + +D EGD+ A + + G P
Sbjct: 436 HMKDAFRVHNHMIQA-----GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490
Query: 299 DLQDKLLDNVQNGKSNLETLRELYG 323
+ N N+E +L G
Sbjct: 491 IFTYNSIVNGLCKSGNIEEAVKLVG 515
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI--FEE 179
++V + +G + R++E VL+ NV + L D ++A I F E
Sbjct: 177 VFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFRE 236
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
+ +C++ N +I C+ G +++A +L+ +LKG V S+ + GY + +
Sbjct: 237 FPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGE 296
Query: 240 IHKA---VEAMKK 249
+ K +E MK+
Sbjct: 297 LDKVWKLIEVMKR 309
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 21/259 (8%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+MR Y +++ + + G EK + + +++E+G+ D Y Y + +Y+ A
Sbjct: 289 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 348
Query: 63 DHEGIDKILTMME---ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
G +I ++M+ +P D Y + + YG+ GL A A+ E++K +
Sbjct: 349 YPYGAAEIFSLMQHMGCEP----DRASYNIMVDAYGRAGLHSDAEAVF----EEMKRLGI 400
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN---VISSLL----KLDDLES 172
+ L Y K DV + + K+ + NG V++S+L +L
Sbjct: 401 APTMKSHMLLLSAYSKARDVTKCEAIVKE---MSENGVEPDTFVLNSMLNLYGRLGQFTK 457
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
EKI E E+ D N LI++Y + G LE+ E L K K V +W
Sbjct: 458 MEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIG 517
Query: 233 GYRQNSQIHKAVEAMKKVL 251
Y + K +E ++++
Sbjct: 518 AYSRKKLYVKCLEVFEEMI 536
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M+ LG+A T + +L Y K + K ++++ EM ENG+ D + + L+ Y
Sbjct: 392 FEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGR 451
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDK 102
++KIL ME P A D Y + N YGK G L++
Sbjct: 452 LGQFTKMEKILAEMENGPCTA-DISTYNILINIYGKAGFLER 492
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M + G+ T V NSML LY + G F K++ ++ EME T D TY ++ Y
Sbjct: 427 VKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGK 486
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109
A E I+++ ++ + N D V + + Y + L K L + ++
Sbjct: 487 AGFLERIEELFVELK-EKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEE 534
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 125/306 (40%), Gaps = 26/306 (8%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+R + +N ++ Y + +++ +SL ++ E+ TY + AY A
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 205
Query: 64 HEGIDKILTMME---ADPNVALDWVIYATVGNGY-----GKVGLLDKALAMLKKSEEQIK 115
E + +L M+ P I TV N Y + G ++A+ + ++ + +
Sbjct: 206 IERAEVVLVEMQNHHVSPK-----TIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRD-R 259
Query: 116 GAKVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
YN+++ LYGK K +++ E+ K Y ++++ + E AE
Sbjct: 260 CKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAE 319
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234
+IFE+ + L D + N L++ Y R G A + + + G E S+ + Y
Sbjct: 320 EIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 379
Query: 235 RQ---NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
+ +S E MK++ A P+++S L + D+ E ++ ++
Sbjct: 380 GRAGLHSDAEAVFEEMKRLGIA--------PTMKSHMLLLSAYSKARDVTKCEAIVKEMS 431
Query: 292 DKGFIP 297
+ G P
Sbjct: 432 ENGVEP 437
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 6/191 (3%)
Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM 73
+ YN M+ LY G EK+ ++ +++ ++ D +TY LS+ A + + + KIL
Sbjct: 193 ITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEE 252
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
M D + WV Y + + Y + A + L E+ + Y+ ++ L+
Sbjct: 253 MRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGL 312
Query: 134 GKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEW-ESQALCYDT-- 189
G K + +IW+ + ++L++ Y V+SS L L L AE+I +W ES+ +D
Sbjct: 313 GNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDASA 372
Query: 190 --RIPNFLIDV 198
RI N DV
Sbjct: 373 CLRILNAFRDV 383
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 10/295 (3%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+++ T N+++K + K G E+L + +M+ENGI YTY ++ A
Sbjct: 176 SEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSA 235
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+ +++ +ME+ + D V Y T+ GY K G KA+ L+ E + A +
Sbjct: 236 MFVDSAERVFEVMESG-RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKIT 294
Query: 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
+I Y V E+ +K ++V + + VI L K L +FE
Sbjct: 295 YMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMI 354
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
+ + I LID Y ++G +E A L++ +G + V ++ + G +N ++
Sbjct: 355 RKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVE 414
Query: 242 KAVEAMKKVLAAYQTLVKWKPSVESL--AACLDYFKDEGDIGGAENFIELLNDKG 294
+A++ + T ++ S+ ++ +D G + AE E +++KG
Sbjct: 415 EALD-------YFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG 462
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 18/257 (7%)
Query: 1 MQKMRDL---GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57
M+K+RD+ G + Y +M++ Y +F +L EM+E GI + + +
Sbjct: 277 MEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGG 336
Query: 58 YA-DASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQ 113
+ +EG M+ + PNVA IY + +GY K G ++ A+ +L + +E
Sbjct: 337 LCKEGKLNEGYTVFENMIRKGSKPNVA----IYTVLIDGYAKSGSVEDAIRLLHRMIDEG 392
Query: 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLES 172
K V Y+V++ K G+ ++ L + + +N+ Y ++I L K ++
Sbjct: 393 FKPDVVT--YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDE 450
Query: 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLA 231
AE++FEE + D+ N LID + ++ +++A L E+ +G + V ++ L
Sbjct: 451 AERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILL 510
Query: 232 TGYRQNSQIHKAVEAMK 248
+G + H+ EA+K
Sbjct: 511 SGMFKE---HRNEEALK 524
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 110/270 (40%), Gaps = 42/270 (15%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GLA ++ Y+S++ K G ++ + L EM E G T D Y Y + A+ + H +
Sbjct: 427 GLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF---TKHRKV 483
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
D+A+A+ K+ EE+ + Y ++L
Sbjct: 484 ---------------------------------DEAIALFKRMEEEEGCDQTVYTYTILL 510
Query: 128 TLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
+ K + ++ L++W++ K + +R + + L + A KI +E +
Sbjct: 511 SGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVI 570
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246
D + +I+ C+ G +++A L + +GRE+ + + R+ + A++
Sbjct: 571 LDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKL 629
Query: 247 M-KKVLAAYQTLVKWKPSVES---LAACLD 272
M K+ Y+ + K V+ L C D
Sbjct: 630 MHSKIGIGYERMGSVKRRVKFTTLLETCFD 659
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM G+ V YN+++ + + N + + + E G+ + YTY +
Sbjct: 466 LSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFR 525
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + +++ M + N+ ++ V+Y T+ NG KVG KA +L E+ +
Sbjct: 526 NHDEQNALEVVNHMTSS-NIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSC 584
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLESA 173
+YN I+ + K G+ D + +E ++ NG Y ++++ L K + ++ A
Sbjct: 585 MSYNSIIDGFFKEGEMDSAVAAYE------EMCGNGISPNVITYTSLMNGLCKNNRMDQA 638
Query: 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG 233
++ +E +++ + D LID +C+ +E A L + +G + L +G
Sbjct: 639 LEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISG 698
Query: 234 YRQNSQIHKAVEAMKKVL 251
+R + A++ KK+L
Sbjct: 699 FRNLGNMVAALDLYKKML 716
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 107/248 (43%), Gaps = 9/248 (3%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
KM G + +V ++ +++ + K G EK +ME G+T + T + +
Sbjct: 364 KMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQ 423
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
HE K+ E+ + + T+ + K G D+A +L K E + G V S
Sbjct: 424 KHEEALKLFD--ESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSY 481
Query: 123 YNVILTLYGKYGKKD-DVLRIW--ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
NV+L G +K+ D+ RI + +K +K N Y +I + D ++A ++
Sbjct: 482 NNVML---GHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNH 538
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA-ENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
S + + + +I+ C+ G KA E L N + K + S+ + G+ +
Sbjct: 539 MTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEG 598
Query: 239 QIHKAVEA 246
++ AV A
Sbjct: 599 EMDSAVAA 606
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 119/316 (37%), Gaps = 39/316 (12%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y S++ K GN + L EM +GI+ + + ++ + +D + ME
Sbjct: 307 YTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKME 366
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ----------------IKGAKV 119
+ + + V ++ + + K G ++KAL KK E +KG K
Sbjct: 367 KE-GPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKH 425
Query: 120 NSAY-----------------NVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVI 161
A N IL+ K GK D+ + ++ + + Y NV+
Sbjct: 426 EEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVM 485
Query: 162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE 221
+ +++ A +F + L + + LID RN + A +VNH E
Sbjct: 486 LGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIE 545
Query: 222 IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIG 281
++ + + G + Q KA E + ++ + V S S + +D F EG++
Sbjct: 546 VNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCV----SCMSYNSIIDGFFKEGEMD 601
Query: 282 GAENFIELLNDKGFIP 297
A E + G P
Sbjct: 602 SAVAAYEEMCGNGISP 617
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 113/277 (40%), Gaps = 50/277 (18%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
L + + YNS++ ++K G + + EM NGI+ + TY + ++ + +D
Sbjct: 580 LCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCK---NNRMD 636
Query: 69 KILTMMEADPN--VALDWVIYATVGNGYGKVGLLDKALAMLKKS-EEQIKGAKVNSAYNV 125
+ L M + N V LD Y + +G+ K ++ A A+ + EE + ++ YN
Sbjct: 637 QALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQ--PIYNS 694
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVK----------------VLNNG------------- 156
+++ + G +++ +LYKK +K +L +G
Sbjct: 695 LISGFRNLG---NMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQ 751
Query: 157 ----------YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206
Y +++ L K K+FEE + + + I N +I + R G L+
Sbjct: 752 AVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLD 811
Query: 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+A L + KG ++ L +G N Q +A
Sbjct: 812 EAFRLHDEMLDKGILPDGATFDILVSGQVGNLQPVRA 848
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Query: 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI 142
D ++Y+ K L A ++L++ +E+ Y ++ K G DD +R+
Sbjct: 267 DSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRL 326
Query: 143 W-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
E+ + + ++I+ K +DL SA +F++ E + ++ + LI+ + +
Sbjct: 327 KDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRK 386
Query: 202 NGLLEKA 208
NG +EKA
Sbjct: 387 NGEMEKA 393
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 9/218 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ M G+ V+YN+++ + + G + + ++ +M E G+ D T+ +R+SA
Sbjct: 205 LNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCK 264
Query: 61 ASDHEGIDKILTMMEADPNVAL---DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+I + ME D + L + + Y + G+ KVGLL+ A + + E A
Sbjct: 265 EGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLA 324
Query: 118 KVNSAYNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAE 174
+ S YN+ L +GK+ + + VL+ ++ K + Y ++ L KL L A+
Sbjct: 325 SLQS-YNIWLQGLVRHGKFIEAETVLK--QMTDKGIGPSIYSYNILMDGLCKLGMLSDAK 381
Query: 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212
I + +C D L+ YC G ++ A++L+
Sbjct: 382 TIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLL 419
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 14/292 (4%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+ +YN +L+ K E + L +M GI YT+ + A D+S + ++
Sbjct: 111 SVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELF 170
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLY 130
M + + + + GY K GL DK L +L E G N YN I++ +
Sbjct: 171 DEM-PEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESF--GVLPNKVIYNTIVSSF 227
Query: 131 GKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQ---ALC 186
+ G+ DD ++ E ++ V + + + IS+L K + A +IF + E L
Sbjct: 228 CREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLP 287
Query: 187 YDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245
I N ++ +C+ GLLE A+ L + ++S+ G ++ + +A
Sbjct: 288 RPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAET 347
Query: 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+K++ T PS+ S +D G + A+ + L+ G P
Sbjct: 348 VLKQM-----TDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCP 394
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/365 (18%), Positives = 139/365 (38%), Gaps = 45/365 (12%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G+ + YN ++ K G +++ M+ NG+ D TY L Y
Sbjct: 349 LKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCS 408
Query: 61 ASDHEGIDKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ +L M + PN ++ ++ K+G + +A +L+K E+ G
Sbjct: 409 VGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSL----WKMGRISEAEELLRKMNEKGYGL 464
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYK----KAVKVLNNG----------------- 156
+ N+I+ G+ D + I + + A+ L N
Sbjct: 465 DTVTC-NIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPD 523
Query: 157 ---YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
Y +++ L K A+ +F E + L D+ N I +C+ G + A ++
Sbjct: 524 LITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLK 583
Query: 214 HEKLKGREIHVKSWYYLATGY---RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270
+ KG ++++ L G Q +IH ++ MK+ P++ +
Sbjct: 584 DMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKE--------KGISPNICTYNTA 635
Query: 271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELY--GNSLAG 328
+ Y + + A N ++ + K P K L + + +E++ S+ G
Sbjct: 636 IQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICG 695
Query: 329 NEETL 333
+E L
Sbjct: 696 QKEGL 700
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Query: 1 MQKMRDLGLARTTVVYNSM-LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA 59
++ M G ++ YNS+ L L K FE + LM EM+E GI+ + TY T +
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFE-IHGLMDEMKEKGISPNICTYNTAIQYLC 640
Query: 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ E +L M N+A + + + + KV D A + + + I G K
Sbjct: 641 EGEKVEDATNLLDEM-MQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFE-TAVSICGQK- 697
Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-------YRNVISSLLKLDDLES 172
Y+++ G+ +L+ EL + VL+ G Y++++ SL K D+LE
Sbjct: 698 EGLYSLMFNELLAAGQ---LLKATELLEA---VLDRGFELGTFLYKDLVESLCKKDELEV 751
Query: 173 AEKIFEEWESQALCYDTRIPNFLID 197
A I + + +D +ID
Sbjct: 752 ASGILHKMIDRGYGFDPAALMPVID 776
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 135/310 (43%), Gaps = 8/310 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM++ G+ YN ++ K G + + EM E G++ + TY T +
Sbjct: 257 EKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCRE 316
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
+K++ M++D + + + Y T+ +G+ VG L KAL++ + + + +
Sbjct: 317 MKLNEANKVVDQMKSD-GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL-V 374
Query: 122 AYNVILTLYGKYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN++++ + + G + + E+ ++ +K Y +I + + D++E A ++
Sbjct: 375 TYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSM 434
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
E L D + LI +C G + +A L K E + + + GY +
Sbjct: 435 EELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSS 494
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
++A++ +K++ + P+V S ++ E AE +E + D G P+
Sbjct: 495 YRALKLLKEMEEK-----ELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTS 549
Query: 301 QDKLLDNVQN 310
L+ +N
Sbjct: 550 ILSLISRAKN 559
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 113/297 (38%), Gaps = 45/297 (15%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
++ + G + V+Y +++ K G EK L EM + G+ + TY +
Sbjct: 188 ELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI------- 240
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
NG K G+ + M +K +E G N
Sbjct: 241 -----------------------------NGLFKNGVKKQGFEMYEKMQED--GVFPNLY 269
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
YN ++ K G+ D +++ E+ ++ V Y +I L + L A K+ ++
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+S + + N LID +C G L KA +L K +G + ++ L +G+ +
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDT 389
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
A + +K++ KPS + +D F ++ A + + G +P
Sbjct: 390 SGAAKMVKEMEER-----GIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVP 441
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 5/249 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++KM++ G+ + V Y+ ++ + K G+ E D E + T + Y + A+
Sbjct: 367 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ E + ++ ME + + IY T+ +GY V K L + K+ +E V
Sbjct: 427 TCNMERAEALVREMEEE-GIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVV 485
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ Y ++ LY K GK L + + K + VK Y +I+ +KL D +A +FE+
Sbjct: 486 T-YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFED 544
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-EKLKGREIHVKSWYYLATGYRQNS 238
+ + D + N +I +C G +++A V +KL+ R +++ + GY ++
Sbjct: 545 MVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT-TRTFMPIIHGYAKSG 603
Query: 239 QIHKAVEAM 247
+ +++E
Sbjct: 604 DMRRSLEVF 612
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/338 (18%), Positives = 137/338 (40%), Gaps = 53/338 (15%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++++ G T V Y ++ LY K G K + M+E G+ ++ TY ++ +
Sbjct: 472 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 531
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
D + M + + D ++Y + + + +G +D+A+ +K+ ++++
Sbjct: 532 LKDWANAFAVFEDMVKE-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEM-QKLRHRPTT 589
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEE 179
+ I+ Y K G L ++++ ++ V + + +I+ L++ +E A +I +E
Sbjct: 590 RTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDE 649
Query: 180 W------------------------ESQALCYDTRIPNFLIDV-----------YCRNGL 204
+A Y TR+ N +DV C++G
Sbjct: 650 MTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGR 709
Query: 205 LEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKA---VEAMKKVLAAYQTLVK 259
++ A L +++ R I S+ Y L G+ + + +A ++ MKK
Sbjct: 710 MQSA--LAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV------- 760
Query: 260 WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
KP + + + + GD+ A IE + G P
Sbjct: 761 -KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKP 797
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 5/252 (1%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M ++G T + N+++ G L+ M E G + TY L
Sbjct: 165 VDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCK 224
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+ ++L ME + + LD V Y+ + +G K G LD A + +E +IKG K +
Sbjct: 225 SGQTALAMELLRKME-ERKIKLDAVKYSIIIDGLCKDGSLDNAFNLF--NEMEIKGFKAD 281
Query: 121 SA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
Y ++ + G+ DD ++ ++ K+ + + +I +K L AE++ +
Sbjct: 282 IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E + + DT LID +C+ L+KA ++++ KG +++++ L GY + +
Sbjct: 342 EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKAN 401
Query: 239 QIHKAVEAMKKV 250
I +E +K+
Sbjct: 402 LIDDGLELFRKM 413
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 27/312 (8%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY------CTRLSAYADASDHEGIDK 69
++ + + +T ++ + L +ME GI ++ YT C R + A G K
Sbjct: 75 FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMG--K 132
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI--L 127
I+ + +P D V ++T+ NG G + +AL ++ + E + + ++ L
Sbjct: 133 IIK-LGYEP----DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGL 187
Query: 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
L GK D VL I + + + Y V+ + K A ++ + E + +
Sbjct: 188 CLNGKVS--DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKL 245
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D + +ID C++G L+ A NL N ++KG + + + L G+ + + +
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLL 305
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP-----TDLQD 302
+ ++ K P V + +A +D F EG + AE + + +G P T L D
Sbjct: 306 RDMIKR-----KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID 360
Query: 303 KLLDNVQNGKSN 314
Q K+N
Sbjct: 361 GFCKENQLDKAN 372
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 19/245 (7%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G ++Y ++++ + G ++ L+ +M + IT D + SA D EG
Sbjct: 277 GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF----SALIDCFVKEG- 331
Query: 68 DKILTMMEADP--------NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
+ EA+ ++ D V Y ++ +G+ K LDKA ML + G +
Sbjct: 332 ----KLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387
Query: 120 NSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
+ +N+++ Y K DD L ++ ++ + V Y +I +L LE A+++F+
Sbjct: 388 RT-FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
E S+ + D L+D C NG EKA + + E+ + + + G S
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506
Query: 239 QIHKA 243
++ A
Sbjct: 507 KVDDA 511
Score = 35.0 bits (79), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 6/209 (2%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
+KM G+ TV YN++++ + + G E L EM + D +Y L D
Sbjct: 411 RKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDN 470
Query: 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN- 120
+ E +I +E + LD IY + +G +D A + +KG K +
Sbjct: 471 GEPEKALEIFEKIEKS-KMELDIGIYNIIIHGMCNASKVDDAWDLF--CSLPLKGVKPDV 527
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV-ISSLLKLDDLESAEKIFEE 179
YN+++ K G + ++ ++ N N+ I + L D + K+ EE
Sbjct: 528 KTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEE 587
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKA 208
+ D ++D+ +G L+K+
Sbjct: 588 IKRCGFSVDASTVKMVVDML-SDGRLKKS 615
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 140/339 (41%), Gaps = 18/339 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+M + G+A YN M+ + G + L+ +M E I D T+ +SA
Sbjct: 319 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVK 378
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
+K+ M + D V Y ++ G+ K D A M + +
Sbjct: 379 EGKLFEAEKLCDEM-LHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-----DLMASPDV 432
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+N I+ +Y + + D+ +++ E+ ++ + Y +I ++D+L +A+ +F+E
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 492
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S +C DT N L+ +C N LE+A L ++ ++ ++ + G + S+
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 552
Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ +A + L + +P V++ + F + I A + D G P +
Sbjct: 553 VDEAWD-----LFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDN 607
Query: 300 -----LQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
L L + KS +E + E+ N +G+ T+
Sbjct: 608 STYNTLIRGCLKAGEIDKS-IELISEMRSNGFSGDAFTI 645
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 107/253 (42%), Gaps = 7/253 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM GL V Y +++ K G+ + +L+ +MEE I D Y +
Sbjct: 249 VNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCK 308
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
H + + M + +A + Y + +G+ G A +L+ E+ V
Sbjct: 309 DGHHSDAQYLFSEM-LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVL 367
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+ +N +++ K GK + ++ E+ + + Y ++I K + + A+ +F+
Sbjct: 368 T-FNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDL 426
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
S D N +IDVYCR +++ L+ +G + ++ L G+ +
Sbjct: 427 MASP----DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 482
Query: 240 IHKAVEAMKKVLA 252
++ A + +++++
Sbjct: 483 LNAAQDLFQEMIS 495
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 17/276 (6%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
+RD G TV YN ++ Y + ++ ++ ++M+E G DR TYCT + +A A
Sbjct: 386 VRD-GCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGF 444
Query: 64 HE-GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-S 121
+ +D M EA ++ D Y+ + N GK G L A + E +G N
Sbjct: 445 LDIAMDMYQRMQEA--GLSPDTFTYSVIINCLGKAGHLPAAHRLF--CEMVGQGCTPNLV 500
Query: 122 AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
+N+++ L+ K + L+++ ++ + Y V+ L LE AE +F E
Sbjct: 501 TFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEM 560
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
+ + D + L+D++ + G ++KA G +V + L + + + ++
Sbjct: 561 QRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRM 620
Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVES----LAACLD 272
+A ++ +LA + PS+++ L+ C D
Sbjct: 621 SEAYNLLQSMLA-----LGLHPSLQTYTLLLSCCTD 651
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 122/317 (38%), Gaps = 50/317 (15%)
Query: 40 EENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD---PNVAL-------------- 82
+ G +D +TY T + A I+K+L M D PN
Sbjct: 351 RQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYL 410
Query: 83 -----------------DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYN 124
D V Y T+ + + K G LD A+ M ++ +E G ++ Y+
Sbjct: 411 KEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQE--AGLSPDTFTYS 468
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183
VI+ GK G R++ E+ + + +I+ K + E+A K++ + ++
Sbjct: 469 VIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA 528
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
D + +++V G LE+AE + E+ K+W Y +
Sbjct: 529 GFQPDKVTYSIVMEVLGHCGFLEEAEGVF-------AEMQRKNWVPDEPVYGLLVDLWGK 581
Query: 244 VEAMKKVLAAYQTLVK--WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301
+ K YQ +++ +P+V + + L F + A N ++ + G P+ LQ
Sbjct: 582 AGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPS-LQ 640
Query: 302 DK--LLDNVQNGKSNLE 316
LL + +SN +
Sbjct: 641 TYTLLLSCCTDARSNFD 657
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 137/342 (40%), Gaps = 46/342 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ +M G + V YN+++K Y K GNF + + EM +G+T TY + + +
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Query: 61 ASDHEGIDKILTMMEA----------------------------------DPNVALDWVI 86
A + + L M D + V
Sbjct: 358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVT 417
Query: 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI-WEL 145
Y + NG+ G ++ A+A+L+ +E+ V S Y+ +L+ + + D+ LR+ E+
Sbjct: 418 YNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVS-YSTVLSGFCRSYDVDEALRVKREM 476
Query: 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLL 205
+K +K Y ++I + + A ++EE L D LI+ YC G L
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL--------AAYQTL 257
EKA L N KG V ++ L G + S+ +A + K+ Y TL
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Query: 258 VKWKPSVE--SLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
++ ++E S+ + + F +G + A+ E + K P
Sbjct: 597 IENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKP 638
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 123/302 (40%), Gaps = 16/302 (5%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M + ++ YN +++ + GN + +L +ME G + TY T + Y
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
Query: 61 ASDHEGIDKILTMMEA---DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ K+L M +PN+ + Y V NG + G + + +L +E +G
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNL----ISYNVVINGLCREGRMKEVSFVL--TEMNRRGY 306
Query: 118 KVNSA-YNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
++ YN ++ Y K G L + E+ + + Y ++I S+ K ++ A +
Sbjct: 307 SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAME 366
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
++ + LC + R L+D + + G + +A ++ G V ++ L G+
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHC 426
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
++ A+ ++ + P V S + L F D+ A + +KG
Sbjct: 427 VTGKMEDAIAVLEDMKEK-----GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 296 IP 297
P
Sbjct: 482 KP 483
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 37/281 (13%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M D G + + V YN+++ + TG E +++ +M+E G++ D +Y T LS +
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Query: 61 ASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GA 117
+ D +D+ L + + + D + Y+++ G+ + +A + EE ++ G
Sbjct: 463 SYD---VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY---EEMLRVGL 516
Query: 118 KVNS-AYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
+ Y ++ Y G + L++ E+ +K V Y +I+ L K A++
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKR 576
Query: 176 I-----FEEWESQALCYDTRIPNF----------LIDVYCRNGLLEKAENLVNHEKLKGR 220
+ +EE + Y T I N LI +C G++ +A+ + E + G+
Sbjct: 577 LLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVF--ESMLGK 634
Query: 221 EIHVKSWYYLATGYRQNSQIHKAVEA--MKKVLAAYQTLVK 259
+ G N IH A ++K Y+ +VK
Sbjct: 635 N-------HKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVK 668
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/326 (18%), Positives = 138/326 (42%), Gaps = 16/326 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA- 59
++ M GL + YN ++ + G +++ ++ EM G + D TY T + Y
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322
Query: 60 DASDHEGIDKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+ + H+ + M+ P+V + Y ++ + K G +++A+ L + +++G
Sbjct: 323 EGNFHQALVMHAEMLRHGLTPSV----ITYTSLIHSMCKAGNMNRAMEFL--DQMRVRGL 376
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175
N Y ++ + + G ++ R+ E+ Y +I+ +E A
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436
Query: 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235
+ E+ + + L D + ++ +CR+ +++A + KG + ++ L G+
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
+ + +A + +++L V P + A ++ + EGD+ A + +KG
Sbjct: 497 EQRRTKEACDLYEEMLR-----VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Query: 296 IPTDLQDKLLDNVQNGKSNLETLREL 321
+P + +L N N +S + L
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRL 577
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 62/318 (19%), Positives = 125/318 (39%), Gaps = 33/318 (10%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++ M++ GL+ V Y+++L + ++ + ++ + EM E GI D TY + + + +
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497
Query: 61 AS-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------ 113
E D M+ + D Y + N Y G L+KAL + + E+
Sbjct: 498 QRRTKEACDLYEEMLRV--GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 114 ------IKG----AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS 163
I G ++ A ++L L+ + DV Y ++ +N + S
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVT-----YHTLIENCSNIEFKSVVS 610
Query: 164 LLK----LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
L+K + A+++FE + D N +I +CR G + KA L G
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
Query: 220 REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279
+H + L + ++++ + VL + + E ++ EG+
Sbjct: 671 FLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCEL-----SEAEQAKVLVEINHREGN 725
Query: 280 IGGAENFIELLNDKGFIP 297
+ + + + GF+P
Sbjct: 726 MDVVLDVLAEMAKDGFLP 743
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 47/248 (18%), Positives = 100/248 (40%), Gaps = 37/248 (14%)
Query: 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL--TLYGK--YGKKDDVLR 141
++ V Y ++ L+DKAL+++ ++ V S YN +L T+ K ++V +
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLS-YNAVLDATIRSKRNISFAENVFK 194
Query: 142 IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201
E+ + V Y +I +++ A +F++ E++ + N LID YC+
Sbjct: 195 --EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
Query: 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV--------LAA 253
++ L+ LKG E ++ S+ + G + ++ + + ++
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312
Query: 254 YQTLVK----------------------WKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
Y TL+K PSV + + + G++ A F++ +
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 292 DKGFIPTD 299
+G P +
Sbjct: 373 VRGLCPNE 380
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/348 (20%), Positives = 152/348 (43%), Gaps = 32/348 (9%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M G+ V Y+S++ G + L+ +M E I D +T+ + A+
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 61 ASDHEGIDKILTMM---EADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
+K+ M DP++ V Y+++ NG+ LD+A M + +
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSI----VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394
Query: 118 KVNSAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
V + YN ++ + KY + ++ + ++ E+ ++ + Y +I L + D + A++I
Sbjct: 395 DVVT-YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236
F+E S + + N L+D C+NG LEKA + + + E + ++ + G +
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 237 NSQIHK--------AVEAMKKVLAAYQTLVKW---KPSVESLAACLDYFKDEGDIGGAEN 285
++ +++ +K + AY T++ K S E A K++G
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT------ 567
Query: 286 FIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETL 333
L + G T ++ +L D + +++ E ++E+ AG+ T+
Sbjct: 568 ----LPNSGCYNTLIRARLRDG--DREASAELIKEMRSCGFAGDASTI 609
>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270
OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
Length = 1038
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 4/213 (1%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ LG V Y+S++ L K G++EK L +M GI YT T LS Y
Sbjct: 318 EMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTE 377
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
++ + ME + + D VI + YGK+GL A +M +++ E++
Sbjct: 378 NYPKALSLFADMERN-KIPADEVIRGLIIRIYGKLGLFHDAQSMFEET-ERLNLLADEKT 435
Query: 123 YNVILTLYGKYGKKDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
Y + ++ G L + E+ K + + + Y ++ K+ +++ AE+ F
Sbjct: 436 YLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRALS 495
Query: 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH 214
L D N ++++Y R L EKA+ +
Sbjct: 496 KTGLP-DASSCNDMLNLYTRLNLGEKAKGFIKQ 527
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 11/232 (4%)
Query: 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
MR G+ + +ML LYYKT N+ K SL +ME N I D + Y
Sbjct: 354 MRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGL 413
Query: 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---N 120
+ E N+ D Y + + G + KAL ++ E +K +
Sbjct: 414 FHDAQSMFEETE-RLNLLADEKTYLAMSQVHLNSGNVVKALDVI----EMMKTRDIPLSR 468
Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
AY V+L Y K D + K + ++++ +L+ E A+ ++
Sbjct: 469 FAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQI 528
Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLAT 232
+ +D + + VYC+ G++ +A++L+ GRE VK ++ T
Sbjct: 529 MVDQVHFDIELYKTAMRVYCKEGMVAEAQDLIVK---MGREARVKDNRFVQT 577
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 29/233 (12%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+T VYN ML K K+ L EM E G+ + +TY +S+YA E K
Sbjct: 257 STSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAF 316
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV--ILTL 129
M++ V + V Y++V + K G +KA+ + + Q V S Y +L+L
Sbjct: 317 GEMKSLGFVP-EEVTYSSVISLSVKAGDWEKAIGLYEDMRSQ---GIVPSNYTCATMLSL 372
Query: 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRN------VISSLL-----KLDDLESAEKIFE 178
Y K E Y KA+ + + RN VI L+ KL A+ +FE
Sbjct: 373 YYKT----------ENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGLFHDAQSMFE 422
Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231
E E L D + + V+ +G + KA +++ E +K R+I + + Y+
Sbjct: 423 ETERLNLLADEKTYLAMSQVHLNSGNVVKALDVI--EMMKTRDIPLSRFAYIV 473
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 5/231 (2%)
Query: 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKI-LTM 73
V SM+ Y + G E L E E G T ++A + H + I T
Sbjct: 706 VIRSMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRTC 765
Query: 74 MEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133
+E N+ LD V Y T+ + G L A + ++ + + YN ++++YG+
Sbjct: 766 LEK--NIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQT-YNTMISVYGRG 822
Query: 134 GKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP 192
+ D + I+ +++ L+ Y N+I K + A +F E + + + T
Sbjct: 823 LQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSY 882
Query: 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
N ++ + + L + + L+ + GR + ++ L Y ++SQ +A
Sbjct: 883 NMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEA 933
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
+ VVY +L+LY + G + + EM E G D T L YA H +L
Sbjct: 187 SVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGRHSA---ML 243
Query: 72 TMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAM-LKKSEEQIKGAKVNSAYNVILT 128
T +A + + L +Y + + K K + + L+ EE + + Y ++++
Sbjct: 244 TFYKAVQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFT--YTLVVS 301
Query: 129 LYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL 185
Y K G K++ L+ + E+ Y +VIS +K D E A ++E+ SQ +
Sbjct: 302 SYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGI 359
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
+M+ G+ T YN M+K+ + ++D L+ ME NG D TY T + YA++S
Sbjct: 869 EMQKKGIKPGTPSYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESS 928
Query: 63 DHEGIDKILTMME 75
+K +T+++
Sbjct: 929 QFAEAEKTITLVK 941
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
TV YN+++K + G + + M +G+ TY T +S Y +DK +
Sbjct: 774 TVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQ---LDKAIE 830
Query: 73 MME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTL 129
+ + LD IY + YGK G + +AL++ SE Q KG K + +YN+++ +
Sbjct: 831 IFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLF--SEMQKKGIKPGTPSYNMMVKI 888
Score = 38.1 bits (87), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 92 NGYGKVGLLDKALAMLKKSEEQ--IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA 149
+ Y + G L+ A + +S E+ GA S LT GK+ + + + R +K
Sbjct: 712 DAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRT--CLEKN 769
Query: 150 VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209
+++ GY +I ++L+ L+ A +I+E + + + N +I VY R L+KA
Sbjct: 770 IELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAI 829
Query: 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244
+ ++ + G + K + + Y + ++ +A+
Sbjct: 830 EIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEAL 864
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 11/217 (5%)
Query: 6 DLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65
D G +++ N++ G + + + E I D Y T + A +A +
Sbjct: 736 DPGAVTISILVNALTN----RGKHREAEHISRTCLEKNIELDTVGYNTLIKAMLEAGKLQ 791
Query: 66 GIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYN 124
+I M V Y T+ + YG+ LDKA+ + S + G ++ Y
Sbjct: 792 CASEIYERMHTS-GVPCSIQTYNTMISVYGRGLQLDKAIEIF--SNARRSGLYLDEKIYT 848
Query: 125 VILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLE-SAEKIFEEWES 182
++ YGK GK + L ++ E+ KK +K Y N++ + L +++ + E
Sbjct: 849 NMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSY-NMMVKICATSRLHHEVDELLQAMER 907
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219
C D LI VY + +AE + K KG
Sbjct: 908 NGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEKG 944
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 126/287 (43%), Gaps = 15/287 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72
V Y++ + + K+G + H M+ + ++ + T+ + Y A D E +
Sbjct: 163 VVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYK 222
Query: 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYG 131
M ++L+ V Y + +G+ K G + +A M + E + NS Y I+ +
Sbjct: 223 EMRR-VRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVED--RVEPNSLVYTTIIDGFF 279
Query: 132 KYGKKDDVLR-IWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190
+ G D+ ++ + ++ + +++ Y +IS L L+ A +I E+ E L D
Sbjct: 280 QRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMV 339
Query: 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
I +++ Y ++G ++ A N+ + +G E V + + G +N Q+H+A+
Sbjct: 340 IFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAI------ 393
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Y + K + ++ +D EGD E +++ G +P
Sbjct: 394 --VYFCIEKANDVMYTVL--IDALCKEGDFIEVERLFSKISEAGLVP 436
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 101/245 (41%), Gaps = 17/245 (6%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
+NS++ K G + + ++H M G D +Y + + + D +L +
Sbjct: 59 FNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLR 118
Query: 76 ADPNVAL--DWVIYATVGNGYGKVGLLDKAL----AMLKKSEEQIKGAKVNSAYNVILTL 129
A D V + ++ NG+ K+ +LD+ MLK + Y+ +
Sbjct: 119 ASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNV------VTYSTWIDT 172
Query: 130 YGKYGKKDDVLRIWELYKK-AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
+ K G+ L+ + K+ A+ + +I K DLE A +++E + +
Sbjct: 173 FCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLN 232
Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY--LATGYRQNSQIHKAVEA 246
LID +C+ G +++AE + + ++ + S Y + G+ Q A++
Sbjct: 233 VVTYTALIDGFCKKGEMQRAEEM--YSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKF 290
Query: 247 MKKVL 251
+ K+L
Sbjct: 291 LAKML 295
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 45/256 (17%)
Query: 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
++MR + ++ V Y +++ + K G ++ + + M E+ + + Y T + +
Sbjct: 222 KEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQR 281
Query: 62 SDHEGIDKILTMM--------------------------EAD--------PNVALDWVIY 87
D + K L M EA ++ D VI+
Sbjct: 282 GDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIF 341
Query: 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYK 147
T+ N Y K G + A+ M K E+ V A + ++ K G+ + + ++ +
Sbjct: 342 TTMMNAYFKSGRMKAAVNMYHKLIERGFEPDV-VALSTMIDGIAKNGQLHEAI-VYFCIE 399
Query: 148 KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK 207
KA V+ Y +I +L K D E++F + L D + I C+ G
Sbjct: 400 KANDVM---YTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQG---- 452
Query: 208 AENLVNHEKLKGREIH 223
NLV+ KLK R +
Sbjct: 453 --NLVDAFKLKTRMVQ 466
>sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610
OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1
Length = 559
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 9/250 (3%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G V YNS++ + GN E++ S++ + +G+ + TY T L + + +
Sbjct: 274 GCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEV 333
Query: 68 DKILTMMEAD---PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124
++IL +M P V + Y + NG K LL +A+ + EQ K YN
Sbjct: 334 EEILNIMYQTSYCPTV----ITYNILINGLCKARLLSRAIDFFYQMLEQ-KCLPDIVTYN 388
Query: 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQ 183
+L K G DD + + L K Y +VI L K ++ A +++ +
Sbjct: 389 TVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDA 448
Query: 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
+ D LI +CR L+E+A ++ +G I ++ + G + +I A
Sbjct: 449 GIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMA 508
Query: 244 VEAMKKVLAA 253
+E ++ +L
Sbjct: 509 IEVVEIMLTG 518
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 67 IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNV 125
I +++ M P D + Y + K G + AL +L+ + + G+ + YN
Sbjct: 161 ILRVMVMSGGVP----DTITYNMIIGNLCKKGHIRTALVLLE--DMSLSGSPPDVITYNT 214
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES----AEKIFEEWE 181
++ YG + +R W+ L NG + + L +L + + E E
Sbjct: 215 VIRCMFDYGNAEQAIRFWK------DQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLE 268
Query: 182 SQAL--CY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227
A+ CY D N L++ CR G LE+ +++ H G E++ ++
Sbjct: 269 DMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTY 317
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Query: 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
K+ D G++ +YN ++ KTG F L EM + I D Y Y T + + +
Sbjct: 440 KLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSG 499
Query: 63 DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK-SEEQIKGAKVNS 121
D + K+ + + + V +D V + + G+ + G+LD+ALA + + +EE + K
Sbjct: 500 DFDEARKVFS-LSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFT- 557
Query: 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
Y+ I+ Y K ++I+ + K K Y ++I+ D + AE+ F+E
Sbjct: 558 -YSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEM 616
Query: 181 ESQALCYDTRIPNFL 195
+ + L +PN +
Sbjct: 617 QLRDL-----VPNVV 626
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 126/287 (43%), Gaps = 16/287 (5%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
YN ++ K G E + E + G+ + +Y + AY + +++ K+L M
Sbjct: 348 YNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQM- 406
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILTLYGKYG 134
A+ D V Y + +G G +D A+ M K + +G ++A YN++++ K G
Sbjct: 407 AERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLID--RGVSPDAAIYNMLMSGLCKTG 464
Query: 135 KKDDV-LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN 193
+ L E+ + + Y +I ++ D + A K+F + + D N
Sbjct: 465 RFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHN 524
Query: 194 FLIDVYCRNGLLEKA---ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
+I +CR+G+L++A N +N E L + ++ + GY + + A++ +
Sbjct: 525 AMIKGFCRSGMLDEALACMNRMNEEHLVPDKF---TYSTIIDGYVKQQDMATAIKIFR-- 579
Query: 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
Y K KP+V + + ++ F +GD AE + + + +P
Sbjct: 580 ---YMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVP 623
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y +I KL D+E+A +F+E + + +I+ +C+ G ++ L++ +
Sbjct: 243 YNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLS--E 300
Query: 217 LKGREIHVKSWY---YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273
+K R + V W+ + YR ++ A E++ ++A KP V + ++
Sbjct: 301 VKERGLRVSVWFLNNIIDAKYRHGYKVDPA-ESIGWIIAN-----DCKPDVATYNILINR 354
Query: 274 FKDEGDIGGAENFIELLNDKGFIPTDLQ 301
EG A F++ + KG IP +L
Sbjct: 355 LCKEGKKEVAVGFLDEASKKGLIPNNLS 382
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 127/292 (43%), Gaps = 16/292 (5%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS---DHEGIDK 69
V YN+++ + G + L+ +M + I + T+ + A+ + + +
Sbjct: 223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYN 282
Query: 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA-YNVILT 128
++ M P+V Y ++ NG GLLD+A M E G N Y ++
Sbjct: 283 VMIQMSVYPDV----FTYGSLINGLCMYGLLDEARQMFYLMERN--GCYPNEVIYTTLIH 336
Query: 129 LYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187
+ K + +D ++I +E+ +K V Y +I + + A+++F + S+
Sbjct: 337 GFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPP 396
Query: 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247
D R N L+D C NG +EKA + + + + +I++ ++ + G + ++ A +
Sbjct: 397 DIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLF 456
Query: 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
+ + KP+V + + F G I A++ + + + GF+P +
Sbjct: 457 CSLFSK-----GMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNE 503
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 5/211 (2%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+Q+M+ + + VVYN++L+ + G SL +EM E G+T + T + Y
Sbjct: 314 LQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGK 373
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
A ++ M+A +D+++Y T+ N +GL ++A + +E ++ N
Sbjct: 374 ARWARDALQLWEEMKAK-KWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDN 432
Query: 121 SAYNVILTLYGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
+Y +L +YG GK + + ++ E+ K V+V G ++ L K ++ +F+
Sbjct: 433 FSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDL 492
Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
+ + D R+ L+ V L E +E+
Sbjct: 493 SIKRGVKPDDRLCGCLLSVM---ALCESSED 520
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 18/233 (7%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
++M GL V Y+++L +Y K+G E++ SL G D + + +
Sbjct: 244 FERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGE 303
Query: 61 ASDHEGIDKILT---MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117
A D++GI +L M+ PNV V+Y T+ G+ G A ++ + E G
Sbjct: 304 AGDYDGIRYVLQEMKSMDVKPNV----VVYNTLLEAMGRAGKPGLARSLFNEMLE--AGL 357
Query: 118 KVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL-ESAEK 175
N ++ +YGK D L++WE K ++ N + ++ L E AE+
Sbjct: 358 TPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAER 417
Query: 176 IFEEWESQALCYDTRIPNF----LIDVYCRNGLLEKAENLVNHEKLKGREIHV 224
+F + + C R NF ++++Y G EKA L G +++V
Sbjct: 418 LFNDMKESVQC---RPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNV 467
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH-EGIDKIL 71
T+ YN +K F+ ++ + EM ++G+ D TY T ++ + + + I+
Sbjct: 186 TIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFE 245
Query: 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLY 130
M + + D V Y+ + + Y K G +++ L++ +++ G K ++ A++V+ ++
Sbjct: 246 RMYKT--GLMPDEVTYSAILDVYSKSGKVEEVLSLYERA--VATGWKPDAIAFSVLGKMF 301
Query: 131 GKYGKKDDV 139
G+ G D +
Sbjct: 302 GEAGDYDGI 310
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 7/239 (2%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
G+A YN ++K+ K FEK + M + G D ++Y T ++ A A +
Sbjct: 144 GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGK---L 200
Query: 68 DKILTMME--ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125
D L + + ++ VA D Y + +G+ K A+ + + E +N+
Sbjct: 201 DDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNI 260
Query: 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQA 184
+++ K G+ DD L+IWE K+ + + Y ++I L +++ AE +F E + +
Sbjct: 261 MISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERK 320
Query: 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243
D N ++ +CR G ++++ L + K +++ S+ L G +N +I +A
Sbjct: 321 ASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEA 378
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 108/283 (38%), Gaps = 44/283 (15%)
Query: 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75
Y+S++ GN +K +S+ +E++E + D TY T L
Sbjct: 293 YSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLG------------------- 333
Query: 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135
G+ + G + ++L + + E K + +YN+++ + GK
Sbjct: 334 -----------------GFCRCGKIKESLELWRIMEH--KNSVNIVSYNILIKGLLENGK 374
Query: 136 KDDVLRIWELYK-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194
D+ IW L K Y I L + A + +E ES D
Sbjct: 375 IDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYAS 434
Query: 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254
+ID C+ LE+A NLV G E++ L G ++S++ +A ++++
Sbjct: 435 IIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKN- 493
Query: 255 QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297
+P+V S + G G A F++ + + G+ P
Sbjct: 494 ----GCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKP 532
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 108/280 (38%), Gaps = 40/280 (14%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH--- 64
G Y++++ K G + L EM E G+ D Y + + DH
Sbjct: 179 GFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTA 238
Query: 65 -EGIDKILTMMEADPNVAL-------------------------------DWVIYATVGN 92
E D++L PNV D Y+++ +
Sbjct: 239 MELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIH 298
Query: 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWEL--YKKAV 150
G G +DKA ++ + +E+ V + YN +L + + GK + L +W + +K +V
Sbjct: 299 GLCDAGNVDKAESVFNELDERKASIDVVT-YNTMLGGFCRCGKIKESLELWRIMEHKNSV 357
Query: 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210
+++ Y +I LL+ ++ A I+ ++ D I C NG + KA
Sbjct: 358 NIVS--YNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALG 415
Query: 211 LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250
++ + G + V ++ + + ++ +A +K++
Sbjct: 416 VMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEM 455
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 7/199 (3%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+++M G T V YN ++ K G F + + + EM ENG D TY L
Sbjct: 487 LREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLC- 545
Query: 61 ASDHEGIDKILTMMEA--DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
ID L + + D +++ + +G VG LD A+ ++ E + A
Sbjct: 546 --RDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTAN 603
Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177
+ + YN ++ + K G + IW +YK ++ Y ++ L + A + F
Sbjct: 604 LVT-YNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFF 662
Query: 178 EEWESQALCYDTRIPNFLI 196
++ + + N L+
Sbjct: 663 DDARNHGIFPTVYTWNILV 681
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 21/264 (7%)
Query: 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID 68
L + + YN+++ Y K GN EK + M+ + I T+ T L A E +
Sbjct: 245 LLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAE 304
Query: 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI-KGAKVNS-AYNVI 126
+L M+ D D ++ + +GY +KA A L E + G K+N+ +++
Sbjct: 305 NVLKEMK-DLGFVPDAFTFSILFDGYSSN---EKAEAALGVYETAVDSGVKMNAYTCSIL 360
Query: 127 LTLYGKYGKKDDVLRIW--ELYKKAV--KVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
L K GK + I E+ K V +V+ Y +I + DL A E E
Sbjct: 361 LNALCKEGKIEKAEEILGREMAKGLVPNEVI---YNTMIDGYCRKGDLVGARMKIEAMEK 417
Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
Q + D N LI +C G +E AE VN KLKG V+++ L GY + + K
Sbjct: 418 QGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDK 477
Query: 243 AVEAMKKV--------LAAYQTLV 258
+ +K++ + +Y TL+
Sbjct: 478 CFDILKEMEDNGTMPNVVSYGTLI 501
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 103/260 (39%), Gaps = 11/260 (4%)
Query: 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
GL V+YN+M+ Y + G+ + ME+ G+ D Y + + + + E
Sbjct: 384 GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENA 443
Query: 68 DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
+K + M+ V+ Y + GYG+ DK +LK+ E+ V S Y ++
Sbjct: 444 EKEVNKMKLK-GVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVS-YGTLI 501
Query: 128 TLYGKYGKKDDVLRI-WELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186
K K + + ++ + V Y +I +E A + +E + +
Sbjct: 502 NCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIE 561
Query: 187 YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV-- 244
+ N LID G L +AE+L+ KG + V ++ L +GY + + +
Sbjct: 562 LNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIAL 621
Query: 245 ------EAMKKVLAAYQTLV 258
+K L Y L+
Sbjct: 622 YEEMKRSGIKPTLKTYHLLI 641
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 10/222 (4%)
Query: 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
+ KM+ G++ + YN ++ Y + F+K ++ EME+NG + +Y T ++
Sbjct: 447 VNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCK 506
Query: 61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
S + ME D V+ IY + +G G ++ A K E KG ++N
Sbjct: 507 GSKLLEAQIVKRDME-DRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSK--EMLKKGIELN 563
Query: 121 -SAYNVI---LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176
YN + L++ GK + +D+L E+ +K +K Y ++IS +++ +
Sbjct: 564 LVTYNTLIDGLSMTGKLSEAEDLL--LEISRKGLKPDVFTYNSLISGYGFAGNVQRCIAL 621
Query: 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218
+EE + + + + LI + + G +E E L LK
Sbjct: 622 YEEMKRSGIKPTLKTYHLLISLCTKEG-IELTERLFGEMSLK 662
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Query: 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216
Y I + +KL D+ ++F + + I N LID C+ + AE L +
Sbjct: 182 YGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEML 241
Query: 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276
+ + ++ L GY + K+ + +++ A + +PS+ + L
Sbjct: 242 ARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADH-----IEPSLITFNTLLKGLFK 296
Query: 277 EGDIGGAENFIELLNDKGFIP 297
G + AEN ++ + D GF+P
Sbjct: 297 AGMVEDAENVLKEMKDLGFVP 317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,139,472
Number of Sequences: 539616
Number of extensions: 5688998
Number of successful extensions: 16174
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 13647
Number of HSP's gapped (non-prelim): 1658
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)