Query 018924
Match_columns 349
No_of_seqs 542 out of 1463
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 05:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.2E-59 9.1E-64 429.8 37.5 331 1-338 460-797 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.8E-58 8.2E-63 423.5 36.8 321 11-338 435-762 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.7E-52 3.7E-57 382.5 28.8 317 2-339 147-503 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.3E-51 5E-56 375.1 31.7 319 1-337 110-433 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.2E-51 4.8E-56 383.6 31.0 318 1-338 245-597 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.5E-49 3.2E-54 371.3 33.5 317 1-333 276-628 (857)
7 PRK11788 tetratricopeptide rep 99.9 7.3E-24 1.6E-28 182.6 33.5 300 20-332 42-355 (389)
8 PRK11788 tetratricopeptide rep 99.9 3.6E-22 7.8E-27 172.1 31.7 274 11-295 67-349 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.4E-21 3.1E-26 186.1 37.0 300 11-325 565-867 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1.6E-21 3.4E-26 185.8 35.5 297 13-323 499-831 (899)
11 PRK15174 Vi polysaccharide exp 99.9 1.2E-18 2.5E-23 157.9 34.6 298 12-324 75-381 (656)
12 PRK15174 Vi polysaccharide exp 99.9 3.3E-18 7.1E-23 155.0 34.6 299 16-330 45-351 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-17 4.8E-22 149.9 37.0 310 9-324 156-571 (615)
14 KOG4626 O-linked N-acetylgluco 99.8 8.4E-19 1.8E-23 147.4 23.0 317 12-346 115-437 (966)
15 TIGR00990 3a0801s09 mitochondr 99.8 2.5E-16 5.3E-21 143.1 36.2 297 15-324 129-496 (615)
16 KOG4626 O-linked N-acetylgluco 99.8 3.2E-17 7E-22 138.0 23.3 303 12-332 149-491 (966)
17 PRK11447 cellulose synthase su 99.8 2.6E-15 5.7E-20 145.1 37.1 301 12-324 302-700 (1157)
18 PRK11447 cellulose synthase su 99.8 1E-14 2.2E-19 141.2 37.1 297 20-329 358-746 (1157)
19 PRK10049 pgaA outer membrane p 99.8 1.7E-14 3.7E-19 133.6 35.7 313 11-332 47-428 (765)
20 PF13429 TPR_15: Tetratricopep 99.8 1.5E-17 3.2E-22 136.3 12.4 260 18-292 13-276 (280)
21 KOG4422 Uncharacterized conser 99.7 1.9E-14 4.1E-19 116.5 29.0 240 8-253 202-462 (625)
22 COG2956 Predicted N-acetylgluc 99.7 3.4E-14 7.3E-19 110.9 28.6 287 26-324 48-347 (389)
23 PRK10049 pgaA outer membrane p 99.7 7.8E-14 1.7E-18 129.3 36.2 307 11-331 81-461 (765)
24 PF13429 TPR_15: Tetratricopep 99.7 1.8E-16 4E-21 129.9 12.4 258 53-322 13-275 (280)
25 PRK10747 putative protoheme IX 99.7 2.7E-13 6E-18 116.2 30.8 278 26-323 97-389 (398)
26 PRK09782 bacteriophage N4 rece 99.7 2.3E-13 5E-18 127.0 31.8 264 12-293 476-740 (987)
27 PRK10747 putative protoheme IX 99.7 4.8E-13 1E-17 114.7 30.7 261 16-292 121-389 (398)
28 PRK09782 bacteriophage N4 rece 99.7 5.5E-13 1.2E-17 124.5 31.8 259 47-322 476-738 (987)
29 PRK14574 hmsH outer membrane p 99.7 3.7E-12 7.9E-17 116.8 35.8 308 20-335 109-488 (822)
30 KOG1126 DNA-binding cell divis 99.7 6.2E-14 1.3E-18 119.4 21.7 287 27-329 333-625 (638)
31 TIGR00540 hemY_coli hemY prote 99.6 1.2E-12 2.7E-17 112.8 30.0 295 15-322 84-397 (409)
32 TIGR00540 hemY_coli hemY prote 99.6 2E-12 4.3E-17 111.5 31.1 272 10-292 114-398 (409)
33 KOG4422 Uncharacterized conser 99.6 4E-12 8.6E-17 103.3 29.8 313 8-325 237-591 (625)
34 PRK14574 hmsH outer membrane p 99.6 5.3E-12 1.1E-16 115.7 33.5 309 18-334 73-453 (822)
35 KOG2003 TPR repeat-containing 99.6 9.2E-13 2E-17 107.8 24.0 284 22-318 428-716 (840)
36 COG3071 HemY Uncharacterized e 99.6 2.8E-11 6.2E-16 97.5 31.0 296 19-330 88-396 (400)
37 TIGR02521 type_IV_pilW type IV 99.6 2.6E-12 5.6E-17 102.5 25.7 200 47-252 30-231 (234)
38 KOG1126 DNA-binding cell divis 99.6 5.9E-13 1.3E-17 113.6 22.2 268 13-297 353-624 (638)
39 KOG1155 Anaphase-promoting com 99.6 4.7E-12 1E-16 103.7 26.2 220 86-324 332-553 (559)
40 KOG1155 Anaphase-promoting com 99.6 2.9E-11 6.3E-16 99.2 29.5 300 9-323 160-494 (559)
41 PRK12370 invasion protein regu 99.6 8.2E-12 1.8E-16 111.8 29.2 267 45-325 253-536 (553)
42 TIGR02521 type_IV_pilW type IV 99.6 7.3E-12 1.6E-16 99.9 25.6 203 82-293 29-232 (234)
43 PRK12370 invasion protein regu 99.6 1.1E-11 2.4E-16 111.0 28.7 150 64-217 320-469 (553)
44 COG3071 HemY Uncharacterized e 99.6 6E-11 1.3E-15 95.7 29.0 267 13-293 118-390 (400)
45 PF13041 PPR_2: PPR repeat fam 99.6 1.7E-14 3.6E-19 84.2 6.4 50 11-60 1-50 (50)
46 KOG1173 Anaphase-promoting com 99.6 2.2E-11 4.8E-16 102.3 27.1 280 8-299 239-524 (611)
47 KOG2002 TPR-containing nuclear 99.6 7.9E-12 1.7E-16 111.0 25.7 316 2-327 441-801 (1018)
48 KOG2076 RNA polymerase III tra 99.5 4.3E-11 9.3E-16 105.7 29.5 300 13-322 139-510 (895)
49 KOG0547 Translocase of outer m 99.5 3.8E-11 8.3E-16 99.2 26.9 197 123-322 363-564 (606)
50 COG2956 Predicted N-acetylgluc 99.5 6E-11 1.3E-15 93.1 26.5 272 11-293 67-347 (389)
51 KOG1129 TPR repeat-containing 99.5 4.2E-12 9.1E-17 99.7 20.2 232 87-330 226-462 (478)
52 KOG0495 HAT repeat protein [RN 99.5 1.4E-10 3.1E-15 99.2 30.6 295 12-324 583-880 (913)
53 KOG4318 Bicoid mRNA stability 99.5 3E-12 6.6E-17 112.5 18.5 88 2-102 14-101 (1088)
54 KOG4318 Bicoid mRNA stability 99.5 6.4E-12 1.4E-16 110.6 19.4 260 34-334 11-275 (1088)
55 KOG2076 RNA polymerase III tra 99.5 1.2E-09 2.6E-14 96.8 31.6 273 53-331 144-483 (895)
56 PF13041 PPR_2: PPR repeat fam 99.4 3.2E-13 7E-18 78.7 6.2 47 188-234 2-48 (50)
57 KOG1129 TPR repeat-containing 99.4 3E-11 6.6E-16 94.9 18.7 233 51-295 226-460 (478)
58 KOG2003 TPR repeat-containing 99.4 6.9E-11 1.5E-15 97.0 21.4 107 223-338 591-702 (840)
59 KOG1173 Anaphase-promoting com 99.4 1.7E-10 3.7E-15 97.0 24.1 283 47-338 243-530 (611)
60 KOG2002 TPR-containing nuclear 99.4 1.6E-10 3.4E-15 103.0 25.0 315 12-338 413-757 (1018)
61 KOG0495 HAT repeat protein [RN 99.4 3.7E-09 8.1E-14 90.8 31.5 307 3-324 469-782 (913)
62 KOG1840 Kinesin light chain [C 99.4 5.2E-10 1.1E-14 96.3 26.0 242 49-291 200-477 (508)
63 PRK11189 lipoprotein NlpI; Pro 99.4 6E-10 1.3E-14 91.8 25.0 233 62-303 40-275 (296)
64 KOG1840 Kinesin light chain [C 99.4 5E-10 1.1E-14 96.4 24.9 241 13-253 199-479 (508)
65 PF12569 NARP1: NMDA receptor- 99.3 7.3E-09 1.6E-13 90.3 29.4 284 21-321 12-331 (517)
66 COG3063 PilF Tfp pilus assembl 99.3 4.5E-09 9.8E-14 79.0 23.5 198 50-253 37-236 (250)
67 COG3063 PilF Tfp pilus assembl 99.3 5.3E-09 1.2E-13 78.6 23.7 202 85-295 36-238 (250)
68 PRK11189 lipoprotein NlpI; Pro 99.3 6.5E-09 1.4E-13 85.6 26.4 217 27-253 40-265 (296)
69 KOG1174 Anaphase-promoting com 99.3 1.2E-08 2.5E-13 83.2 26.3 195 93-299 309-506 (564)
70 KOG0547 Translocase of outer m 99.3 2.2E-09 4.7E-14 89.1 21.4 230 17-253 330-566 (606)
71 PF12569 NARP1: NMDA receptor- 99.3 1.6E-08 3.5E-13 88.2 26.7 256 55-326 11-293 (517)
72 PF04733 Coatomer_E: Coatomer 99.2 8.4E-10 1.8E-14 89.7 16.6 254 20-295 8-267 (290)
73 KOG1915 Cell cycle control pro 99.2 3.2E-07 7E-12 76.3 29.8 304 9-324 170-536 (677)
74 cd05804 StaR_like StaR_like; a 99.2 2.1E-07 4.7E-12 79.3 30.4 92 125-216 119-213 (355)
75 KOG4340 Uncharacterized conser 99.2 1.6E-08 3.5E-13 79.0 20.3 300 4-319 1-334 (459)
76 cd05804 StaR_like StaR_like; a 99.2 3.8E-07 8.3E-12 77.8 31.0 262 20-293 50-336 (355)
77 KOG1174 Anaphase-promoting com 99.2 3.2E-07 6.9E-12 75.0 28.0 301 8-323 189-499 (564)
78 KOG1156 N-terminal acetyltrans 99.1 8.5E-07 1.8E-11 76.6 29.8 303 11-326 73-470 (700)
79 PF04733 Coatomer_E: Coatomer 99.1 6.9E-09 1.5E-13 84.4 15.9 251 55-329 8-268 (290)
80 PF12854 PPR_1: PPR repeat 99.1 1.2E-10 2.6E-15 61.0 3.7 34 7-40 1-34 (34)
81 KOG1125 TPR repeat-containing 99.1 5.8E-08 1.2E-12 82.5 20.8 255 21-285 293-563 (579)
82 KOG1915 Cell cycle control pro 99.1 2.5E-06 5.3E-11 71.3 29.1 82 235-323 415-499 (677)
83 KOG1070 rRNA processing protei 99.0 9.3E-07 2E-11 82.6 26.7 233 48-289 1458-1696(1710)
84 COG5010 TadD Flp pilus assembl 99.0 1.9E-07 4.1E-12 71.9 17.3 160 52-216 70-229 (257)
85 KOG1125 TPR repeat-containing 98.9 1.1E-07 2.4E-12 80.9 17.2 220 58-291 295-525 (579)
86 PF12854 PPR_1: PPR repeat 98.9 1.4E-09 3E-14 56.9 3.8 32 79-110 2-33 (34)
87 KOG4162 Predicted calmodulin-b 98.9 1.2E-05 2.6E-10 71.1 29.5 122 195-324 656-783 (799)
88 KOG1128 Uncharacterized conser 98.9 1.5E-07 3.2E-12 82.2 17.5 219 79-323 393-615 (777)
89 KOG1128 Uncharacterized conser 98.9 5.2E-07 1.1E-11 78.9 20.6 223 9-253 394-616 (777)
90 KOG0624 dsRNA-activated protei 98.9 5.7E-06 1.2E-10 66.4 24.6 295 12-323 37-369 (504)
91 KOG2047 mRNA splicing factor [ 98.9 1.9E-05 4.1E-10 68.6 29.2 168 156-330 389-584 (835)
92 KOG1156 N-terminal acetyltrans 98.9 7.2E-06 1.6E-10 71.1 26.7 307 14-335 9-328 (700)
93 PLN02789 farnesyltranstransfer 98.9 3.1E-06 6.7E-11 70.0 24.0 209 90-309 43-267 (320)
94 PLN02789 farnesyltranstransfer 98.9 7.9E-06 1.7E-10 67.6 26.0 216 14-236 38-267 (320)
95 TIGR03302 OM_YfiO outer membra 98.9 9.8E-07 2.1E-11 70.5 20.3 190 82-294 31-233 (235)
96 TIGR03302 OM_YfiO outer membra 98.9 1.3E-06 2.9E-11 69.8 20.4 188 47-253 32-232 (235)
97 KOG1070 rRNA processing protei 98.8 5.2E-06 1.1E-10 77.9 25.7 231 10-246 1455-1693(1710)
98 COG5010 TadD Flp pilus assembl 98.8 2E-06 4.3E-11 66.4 19.2 156 124-287 70-225 (257)
99 PRK10370 formate-dependent nit 98.8 2.1E-06 4.5E-11 66.1 19.3 118 133-252 52-172 (198)
100 KOG3081 Vesicle coat complex C 98.8 4.8E-06 1.1E-10 64.4 20.6 259 10-293 7-271 (299)
101 KOG3081 Vesicle coat complex C 98.8 1.6E-05 3.5E-10 61.6 23.4 247 55-324 15-271 (299)
102 KOG0548 Molecular co-chaperone 98.8 3.8E-06 8.3E-11 71.1 21.5 289 21-323 10-420 (539)
103 PRK10370 formate-dependent nit 98.8 1.8E-06 3.8E-11 66.5 17.8 154 127-300 23-180 (198)
104 KOG4340 Uncharacterized conser 98.8 3.1E-06 6.7E-11 66.6 18.6 260 48-324 10-305 (459)
105 KOG2376 Signal recognition par 98.7 2E-05 4.4E-10 67.7 24.2 52 20-72 19-70 (652)
106 PRK14720 transcript cleavage f 98.7 1.4E-05 2.9E-10 74.0 25.0 31 12-42 30-60 (906)
107 PRK15179 Vi polysaccharide bio 98.7 9.2E-06 2E-10 74.1 23.8 132 47-183 85-217 (694)
108 KOG3785 Uncharacterized conser 98.7 1.3E-05 2.9E-10 64.7 21.0 210 123-347 288-511 (557)
109 KOG2047 mRNA splicing factor [ 98.7 0.00014 3.1E-09 63.4 29.0 301 15-330 104-457 (835)
110 PRK15179 Vi polysaccharide bio 98.7 1.5E-05 3.3E-10 72.7 24.2 131 84-217 86-216 (694)
111 PRK04841 transcriptional regul 98.7 5.9E-05 1.3E-09 72.8 29.5 275 19-294 458-761 (903)
112 KOG3785 Uncharacterized conser 98.7 4.7E-06 1E-10 67.1 18.0 148 101-251 340-488 (557)
113 KOG2376 Signal recognition par 98.7 0.00016 3.5E-09 62.4 27.8 150 170-321 357-517 (652)
114 KOG4162 Predicted calmodulin-b 98.7 5.3E-05 1.2E-09 67.2 25.5 255 30-295 461-785 (799)
115 PRK15359 type III secretion sy 98.7 3.8E-06 8.2E-11 61.2 16.1 88 53-144 29-116 (144)
116 PRK15359 type III secretion sy 98.7 1.8E-06 3.9E-11 62.9 14.2 113 12-129 23-135 (144)
117 PRK04841 transcriptional regul 98.6 0.00013 2.8E-09 70.5 29.7 302 18-325 414-761 (903)
118 COG4783 Putative Zn-dependent 98.6 0.00016 3.5E-09 61.1 25.8 147 122-294 308-455 (484)
119 KOG0985 Vesicle coat protein c 98.6 2.9E-05 6.2E-10 70.9 22.6 210 85-319 1105-1336(1666)
120 COG4783 Putative Zn-dependent 98.6 5.5E-05 1.2E-09 63.8 22.3 110 60-173 318-427 (484)
121 KOG3060 Uncharacterized conser 98.6 9.9E-05 2.1E-09 56.9 20.9 159 89-251 57-218 (289)
122 TIGR00756 PPR pentatricopeptid 98.6 1.4E-07 3E-12 50.2 4.3 34 15-48 2-35 (35)
123 PF13812 PPR_3: Pentatricopept 98.6 1.5E-07 3.3E-12 49.6 4.2 33 14-46 2-34 (34)
124 KOG3060 Uncharacterized conser 98.6 0.00015 3.3E-09 55.9 21.7 190 26-220 25-222 (289)
125 TIGR02552 LcrH_SycD type III s 98.5 6.3E-06 1.4E-10 59.5 13.4 88 162-251 25-112 (135)
126 TIGR02552 LcrH_SycD type III s 98.5 1.4E-05 3E-10 57.7 14.7 94 87-182 20-113 (135)
127 KOG0624 dsRNA-activated protei 98.5 0.00042 9.1E-09 56.0 28.5 296 21-331 80-427 (504)
128 KOG1914 mRNA cleavage and poly 98.5 0.00066 1.4E-08 58.2 28.3 64 10-75 17-80 (656)
129 KOG3617 WD40 and TPR repeat-co 98.4 5.6E-05 1.2E-09 67.7 19.2 211 12-252 756-995 (1416)
130 KOG0985 Vesicle coat protein c 98.4 0.0014 3E-08 60.6 27.2 240 12-288 983-1244(1666)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.1E-05 4.5E-10 66.6 15.2 124 157-292 172-296 (395)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.4E-05 7.4E-10 65.3 15.6 121 53-180 174-294 (395)
133 TIGR00756 PPR pentatricopeptid 98.4 9.8E-07 2.1E-11 46.8 4.3 31 192-222 3-33 (35)
134 KOG3617 WD40 and TPR repeat-co 98.3 9.3E-05 2E-09 66.4 18.2 241 12-291 725-994 (1416)
135 PF09976 TPR_21: Tetratricopep 98.3 5E-05 1.1E-09 55.5 14.1 20 56-75 56-75 (145)
136 KOG3616 Selective LIM binding 98.3 0.00014 3E-09 64.6 18.5 164 130-322 742-909 (1636)
137 PF09976 TPR_21: Tetratricopep 98.3 7.4E-05 1.6E-09 54.6 14.8 124 157-289 15-143 (145)
138 PRK14720 transcript cleavage f 98.3 0.00017 3.7E-09 67.0 19.7 230 82-333 29-293 (906)
139 TIGR02795 tol_pal_ybgF tol-pal 98.3 5.1E-05 1.1E-09 53.3 13.3 98 193-297 6-109 (119)
140 PF10037 MRP-S27: Mitochondria 98.3 5.4E-05 1.2E-09 64.4 15.0 115 83-198 65-182 (429)
141 KOG1127 TPR repeat-containing 98.3 0.00018 3.9E-09 65.9 18.9 164 14-181 493-657 (1238)
142 PF13812 PPR_3: Pentatricopept 98.3 2.1E-06 4.6E-11 45.1 4.5 28 192-219 4-31 (34)
143 KOG2053 Mitochondrial inherita 98.3 0.0017 3.7E-08 59.1 24.6 223 23-253 19-255 (932)
144 PF08579 RPM2: Mitochondrial r 98.3 2E-05 4.3E-10 52.7 9.5 81 15-96 27-116 (120)
145 PF10037 MRP-S27: Mitochondria 98.3 3E-05 6.5E-10 65.9 13.0 117 121-237 67-186 (429)
146 PF01535 PPR: PPR repeat; Int 98.2 1.4E-06 3.1E-11 44.7 3.1 30 15-44 2-31 (31)
147 KOG2053 Mitochondrial inherita 98.2 0.0046 9.9E-08 56.5 26.4 209 4-220 36-257 (932)
148 KOG3616 Selective LIM binding 98.2 0.00047 1E-08 61.4 19.2 189 58-286 742-930 (1636)
149 PF14938 SNAP: Soluble NSF att 98.2 0.00045 9.7E-09 56.7 18.2 91 203-293 129-225 (282)
150 KOG1127 TPR repeat-containing 98.1 0.00052 1.1E-08 63.0 19.0 183 28-217 473-658 (1238)
151 KOG0548 Molecular co-chaperone 98.1 0.0017 3.7E-08 55.7 20.8 237 16-276 227-471 (539)
152 PF14938 SNAP: Soluble NSF att 98.1 0.0011 2.4E-08 54.4 19.6 135 157-295 117-265 (282)
153 PF08579 RPM2: Mitochondrial r 98.1 8.1E-05 1.8E-09 49.9 10.2 77 195-276 31-116 (120)
154 cd00189 TPR Tetratricopeptide 98.1 8.5E-05 1.9E-09 49.4 11.0 94 16-112 3-96 (100)
155 PF12895 Apc3: Anaphase-promot 98.1 2E-05 4.4E-10 51.5 7.2 80 202-289 2-83 (84)
156 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00028 6E-09 49.5 13.4 98 16-113 5-105 (119)
157 cd00189 TPR Tetratricopeptide 98.1 0.0001 2.2E-09 49.1 10.4 22 90-111 6-27 (100)
158 PF05843 Suf: Suppressor of fo 98.1 0.00019 4.1E-09 58.7 13.6 129 86-217 3-135 (280)
159 PLN03088 SGT1, suppressor of 98.0 0.00016 3.4E-09 61.4 13.5 88 162-251 10-97 (356)
160 PF01535 PPR: PPR repeat; Int 98.0 8E-06 1.7E-10 41.8 3.6 26 192-217 3-28 (31)
161 KOG1914 mRNA cleavage and poly 98.0 0.0048 1E-07 53.2 21.4 214 64-283 309-529 (656)
162 PF12895 Apc3: Anaphase-promot 98.0 4E-05 8.8E-10 50.0 7.5 46 98-144 3-49 (84)
163 PRK02603 photosystem I assembl 98.0 0.00098 2.1E-08 50.3 16.0 58 87-144 38-96 (172)
164 PF05843 Suf: Suppressor of fo 98.0 0.00041 8.9E-09 56.7 14.4 131 49-183 2-136 (280)
165 PRK15363 pathogenicity island 98.0 0.00048 1E-08 49.8 12.8 93 88-182 39-131 (157)
166 KOG0553 TPR repeat-containing 98.0 1.4E-05 3.1E-10 63.1 5.4 98 236-342 93-194 (304)
167 KOG1130 Predicted G-alpha GTPa 98.0 0.00037 7.9E-09 57.8 13.2 271 21-292 25-343 (639)
168 PF06239 ECSIT: Evolutionarily 97.9 0.00027 5.9E-09 53.6 11.4 104 152-279 45-153 (228)
169 CHL00033 ycf3 photosystem I as 97.9 0.00044 9.5E-09 52.0 12.9 58 87-144 38-96 (168)
170 PRK02603 photosystem I assembl 97.9 0.00059 1.3E-08 51.5 13.6 88 121-209 36-126 (172)
171 PLN03088 SGT1, suppressor of 97.9 0.00038 8.2E-09 59.1 13.7 96 19-119 8-103 (356)
172 PRK15363 pathogenicity island 97.9 0.00029 6.4E-09 50.9 10.8 93 159-253 40-132 (157)
173 KOG2041 WD40 repeat protein [G 97.9 0.0031 6.7E-08 56.0 18.7 193 122-345 798-1013(1189)
174 CHL00033 ycf3 photosystem I as 97.9 0.00068 1.5E-08 51.0 13.2 113 29-144 15-137 (168)
175 KOG0553 TPR repeat-containing 97.8 0.00041 8.9E-09 55.1 11.0 97 129-228 90-186 (304)
176 PRK10866 outer membrane biogen 97.8 0.011 2.3E-07 47.3 22.6 61 229-292 180-240 (243)
177 PRK10153 DNA-binding transcrip 97.8 0.0016 3.5E-08 57.9 15.8 134 80-217 333-481 (517)
178 PRK10153 DNA-binding transcrip 97.8 0.0024 5.3E-08 56.8 16.7 139 150-297 333-486 (517)
179 PRK10866 outer membrane biogen 97.8 0.012 2.7E-07 46.9 21.2 179 53-251 37-239 (243)
180 PF06239 ECSIT: Evolutionarily 97.7 0.00036 7.8E-09 52.9 9.3 112 186-321 44-165 (228)
181 KOG1130 Predicted G-alpha GTPa 97.7 0.001 2.2E-08 55.3 12.4 266 57-324 26-344 (639)
182 PF13432 TPR_16: Tetratricopep 97.7 0.00032 7E-09 43.1 7.7 57 196-253 4-60 (65)
183 COG4235 Cytochrome c biogenesi 97.7 0.0025 5.4E-08 51.0 14.0 102 186-295 153-258 (287)
184 PF14559 TPR_19: Tetratricopep 97.7 0.00027 5.8E-09 43.9 6.9 49 202-251 4-52 (68)
185 COG4700 Uncharacterized protei 97.7 0.011 2.4E-07 43.8 16.6 96 122-217 91-188 (251)
186 PF14559 TPR_19: Tetratricopep 97.7 0.00024 5.1E-09 44.2 6.3 51 24-75 2-52 (68)
187 PF13414 TPR_11: TPR repeat; P 97.6 0.00034 7.3E-09 43.6 6.9 63 189-252 3-66 (69)
188 PF12688 TPR_5: Tetratrico pep 97.6 0.0068 1.5E-07 42.2 13.3 54 58-112 11-66 (120)
189 PF12688 TPR_5: Tetratrico pep 97.5 0.008 1.7E-07 41.9 13.1 10 202-211 88-97 (120)
190 PF13525 YfiO: Outer membrane 97.5 0.027 5.8E-07 43.8 19.2 83 195-284 116-198 (203)
191 PF13432 TPR_16: Tetratricopep 97.5 0.0013 2.9E-08 40.3 7.8 54 57-112 6-59 (65)
192 PRK10803 tol-pal system protei 97.4 0.006 1.3E-07 49.2 13.1 101 192-295 146-248 (263)
193 PF03704 BTAD: Bacterial trans 97.4 0.0014 3E-08 47.9 8.8 74 192-266 65-138 (146)
194 PRK10803 tol-pal system protei 97.4 0.0075 1.6E-07 48.6 13.3 99 15-113 145-246 (263)
195 PF13414 TPR_11: TPR repeat; P 97.4 0.00099 2.1E-08 41.5 6.7 62 155-217 4-66 (69)
196 KOG2796 Uncharacterized conser 97.4 0.045 9.8E-07 43.1 19.1 130 122-252 179-314 (366)
197 PF13424 TPR_12: Tetratricopep 97.4 0.00094 2E-08 42.8 6.3 67 225-291 6-73 (78)
198 KOG1538 Uncharacterized conser 97.3 0.037 7.9E-07 49.2 17.1 256 9-293 552-846 (1081)
199 KOG2796 Uncharacterized conser 97.3 0.046 1E-06 43.0 15.9 184 25-228 134-323 (366)
200 COG4700 Uncharacterized protei 97.3 0.044 9.5E-07 40.8 18.4 159 53-217 61-221 (251)
201 COG4235 Cytochrome c biogenesi 97.2 0.033 7.1E-07 44.8 14.8 106 146-253 148-256 (287)
202 PF12921 ATP13: Mitochondrial 97.2 0.0072 1.6E-07 42.5 9.9 100 12-132 1-100 (126)
203 PF13371 TPR_9: Tetratricopept 97.2 0.004 8.6E-08 39.2 8.0 53 198-251 4-56 (73)
204 PF12921 ATP13: Mitochondrial 97.2 0.011 2.4E-07 41.6 10.4 100 47-168 1-102 (126)
205 PF13281 DUF4071: Domain of un 97.1 0.12 2.7E-06 43.6 19.7 95 88-182 145-254 (374)
206 PF03704 BTAD: Bacterial trans 97.1 0.011 2.4E-07 43.2 10.7 69 157-226 65-138 (146)
207 PF13371 TPR_9: Tetratricopept 97.0 0.0035 7.5E-08 39.5 6.5 52 23-75 5-56 (73)
208 COG3898 Uncharacterized membra 97.0 0.17 3.8E-06 42.3 30.0 293 16-328 85-396 (531)
209 KOG0550 Molecular chaperone (D 97.0 0.045 9.7E-07 45.9 13.4 261 19-293 55-350 (486)
210 PF13424 TPR_12: Tetratricopep 96.9 0.0062 1.3E-07 38.9 7.0 62 191-252 7-74 (78)
211 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.068 1.5E-06 45.5 13.8 130 121-253 398-531 (660)
212 KOG2041 WD40 repeat protein [G 96.9 0.23 5.1E-06 44.8 17.6 92 149-253 847-952 (1189)
213 PF13525 YfiO: Outer membrane 96.8 0.15 3.3E-06 39.6 18.9 77 226-311 112-192 (203)
214 PF04840 Vps16_C: Vps16, C-ter 96.8 0.23 5.1E-06 41.4 23.8 110 155-289 178-287 (319)
215 KOG0550 Molecular chaperone (D 96.8 0.26 5.7E-06 41.6 18.1 195 50-253 119-350 (486)
216 PRK15331 chaperone protein Sic 96.8 0.025 5.4E-07 41.3 9.5 84 166-251 49-132 (165)
217 PF13281 DUF4071: Domain of un 96.7 0.29 6.3E-06 41.4 20.1 172 122-297 143-338 (374)
218 KOG1538 Uncharacterized conser 96.7 0.3 6.6E-06 43.7 17.1 216 16-253 601-846 (1081)
219 PRK15331 chaperone protein Sic 96.7 0.035 7.7E-07 40.6 9.8 90 91-182 44-133 (165)
220 KOG0543 FKBP-type peptidyl-pro 96.6 0.076 1.6E-06 44.5 12.0 23 90-112 214-236 (397)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.047 1E-06 46.8 11.0 61 155-217 76-140 (453)
222 KOG3941 Intermediate in Toll s 96.5 0.027 5.9E-07 44.7 8.9 89 10-99 64-173 (406)
223 KOG1941 Acetylcholine receptor 96.5 0.21 4.6E-06 41.4 14.0 129 123-251 125-273 (518)
224 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.4 8.7E-06 41.4 16.2 64 10-75 72-139 (453)
225 PF10300 DUF3808: Protein of u 96.5 0.34 7.3E-06 43.1 16.6 163 89-253 193-376 (468)
226 COG1729 Uncharacterized protei 96.4 0.073 1.6E-06 42.3 10.9 99 14-113 143-244 (262)
227 KOG0543 FKBP-type peptidyl-pro 96.3 0.12 2.6E-06 43.5 12.0 126 125-253 213-355 (397)
228 PF04840 Vps16_C: Vps16, C-ter 96.3 0.51 1.1E-05 39.4 21.5 85 190-289 178-262 (319)
229 PF10300 DUF3808: Protein of u 96.3 0.29 6.2E-06 43.5 15.2 161 124-292 192-375 (468)
230 KOG2610 Uncharacterized conser 96.3 0.26 5.7E-06 40.4 13.3 152 25-179 115-272 (491)
231 KOG2280 Vacuolar assembly/sort 96.3 0.86 1.9E-05 41.7 18.4 109 155-287 685-793 (829)
232 PRK11906 transcriptional regul 96.3 0.37 8E-06 41.7 14.8 145 169-321 273-433 (458)
233 COG3118 Thioredoxin domain-con 96.2 0.53 1.1E-05 38.1 16.4 144 58-205 144-288 (304)
234 KOG3941 Intermediate in Toll s 96.2 0.073 1.6E-06 42.4 9.3 105 151-279 64-173 (406)
235 COG5107 RNA14 Pre-mRNA 3'-end 96.1 0.77 1.7E-05 39.5 19.1 130 155-293 398-531 (660)
236 COG3629 DnrI DNA-binding trans 96.1 0.1 2.2E-06 42.1 10.1 83 190-273 154-236 (280)
237 PF04053 Coatomer_WDAD: Coatom 96.0 0.51 1.1E-05 41.4 14.9 130 50-213 297-426 (443)
238 smart00299 CLH Clathrin heavy 96.0 0.38 8.2E-06 34.7 14.3 85 158-250 11-95 (140)
239 PF08631 SPO22: Meiosis protei 96.0 0.73 1.6E-05 37.9 24.7 165 122-291 86-273 (278)
240 COG1729 Uncharacterized protei 96.0 0.2 4.3E-06 39.9 11.1 100 191-295 144-246 (262)
241 PF13512 TPR_18: Tetratricopep 95.9 0.38 8.2E-06 34.5 11.3 75 20-95 17-93 (142)
242 PF13428 TPR_14: Tetratricopep 95.9 0.025 5.5E-07 31.3 4.4 35 267-301 4-38 (44)
243 KOG1941 Acetylcholine receptor 95.8 0.97 2.1E-05 37.7 14.4 203 14-217 44-274 (518)
244 PF04053 Coatomer_WDAD: Coatom 95.7 0.41 8.8E-06 42.0 13.2 133 13-179 295-427 (443)
245 KOG2280 Vacuolar assembly/sort 95.7 1.7 3.6E-05 40.0 20.1 90 188-292 683-772 (829)
246 COG3898 Uncharacterized membra 95.7 1.1 2.4E-05 37.8 27.0 249 24-293 131-392 (531)
247 PF08631 SPO22: Meiosis protei 95.6 1.1 2.3E-05 36.9 25.2 225 23-252 3-274 (278)
248 PF13428 TPR_14: Tetratricopep 95.5 0.069 1.5E-06 29.6 5.3 28 192-219 4-31 (44)
249 COG0457 NrfG FOG: TPR repeat [ 95.5 0.87 1.9E-05 35.6 28.3 202 85-293 60-265 (291)
250 KOG4555 TPR repeat-containing 95.5 0.43 9.4E-06 33.4 9.8 53 130-182 53-105 (175)
251 KOG4555 TPR repeat-containing 95.5 0.53 1.1E-05 33.0 10.1 91 198-294 52-145 (175)
252 PF09205 DUF1955: Domain of un 95.4 0.62 1.3E-05 32.7 12.3 65 225-295 87-151 (161)
253 COG4649 Uncharacterized protei 95.3 0.82 1.8E-05 33.9 12.5 122 59-181 69-194 (221)
254 smart00299 CLH Clathrin heavy 95.2 0.77 1.7E-05 33.1 14.9 85 17-110 11-95 (140)
255 COG3629 DnrI DNA-binding trans 95.2 0.4 8.8E-06 38.8 10.4 78 49-129 154-236 (280)
256 KOG1585 Protein required for f 95.1 1.3 2.8E-05 34.9 14.1 206 85-317 32-249 (308)
257 PF13512 TPR_18: Tetratricopep 95.0 0.89 1.9E-05 32.6 13.0 79 55-134 17-96 (142)
258 KOG4570 Uncharacterized conser 94.9 0.44 9.5E-06 38.8 9.9 97 155-253 65-164 (418)
259 PF10602 RPN7: 26S proteasome 94.8 0.49 1.1E-05 35.7 9.7 94 157-252 39-141 (177)
260 PRK11906 transcriptional regul 94.8 2.5 5.4E-05 36.8 15.9 163 85-249 252-432 (458)
261 PF07079 DUF1347: Protein of u 94.8 2.5 5.3E-05 36.6 24.6 48 12-59 127-178 (549)
262 KOG2610 Uncharacterized conser 94.6 2.2 4.7E-05 35.4 15.6 154 96-252 115-275 (491)
263 KOG4570 Uncharacterized conser 94.6 0.49 1.1E-05 38.5 9.4 105 7-114 58-165 (418)
264 PF10602 RPN7: 26S proteasome 94.5 0.96 2.1E-05 34.2 10.5 92 50-144 38-137 (177)
265 COG4785 NlpI Lipoprotein NlpI, 94.5 1.8 3.8E-05 33.5 17.2 182 97-295 78-268 (297)
266 COG4105 ComL DNA uptake lipopr 94.4 2 4.4E-05 34.1 20.2 59 159-218 172-233 (254)
267 PF13176 TPR_7: Tetratricopept 94.4 0.11 2.4E-06 27.2 3.9 24 87-110 2-25 (36)
268 PF04184 ST7: ST7 protein; In 94.4 3.2 7E-05 36.4 17.4 126 18-146 173-321 (539)
269 KOG2114 Vacuolar assembly/sort 94.4 1.7 3.6E-05 40.5 13.3 17 94-110 378-394 (933)
270 COG4649 Uncharacterized protei 94.4 1.5 3.3E-05 32.5 14.0 130 12-144 58-191 (221)
271 PF13176 TPR_7: Tetratricopept 94.4 0.13 2.8E-06 27.0 4.1 26 15-40 1-26 (36)
272 PF09205 DUF1955: Domain of un 94.3 1.3 2.7E-05 31.3 14.8 59 161-220 93-151 (161)
273 KOG1550 Extracellular protein 94.3 4.2 9.1E-05 37.2 17.7 189 100-297 228-430 (552)
274 COG1747 Uncharacterized N-term 94.3 3.6 7.8E-05 36.3 20.6 179 12-199 65-249 (711)
275 COG4105 ComL DNA uptake lipopr 94.2 2.3 5E-05 33.8 20.5 61 230-293 173-233 (254)
276 COG3118 Thioredoxin domain-con 94.1 2.6 5.7E-05 34.3 17.0 52 129-180 143-194 (304)
277 PF13170 DUF4003: Protein of u 94.0 3 6.5E-05 34.5 18.7 127 172-305 80-224 (297)
278 KOG1920 IkappaB kinase complex 94.0 5.6 0.00012 38.8 16.2 30 82-112 789-820 (1265)
279 KOG2114 Vacuolar assembly/sort 93.9 5.5 0.00012 37.3 18.9 207 18-252 339-549 (933)
280 COG1747 Uncharacterized N-term 93.9 4.2 9.1E-05 35.9 17.7 174 121-305 67-246 (711)
281 COG0457 NrfG FOG: TPR repeat [ 93.9 2.4 5.3E-05 32.9 26.3 222 26-253 36-265 (291)
282 KOG1585 Protein required for f 93.7 2.8 6.1E-05 33.1 18.2 214 44-287 23-250 (308)
283 PF07035 Mic1: Colon cancer-as 93.5 2.4 5.1E-05 31.6 15.3 135 34-183 15-149 (167)
284 PF09613 HrpB1_HrpK: Bacterial 93.3 2.4 5.2E-05 31.1 11.7 16 95-110 55-70 (160)
285 PF00515 TPR_1: Tetratricopept 93.3 0.2 4.3E-06 25.7 3.6 29 225-253 2-30 (34)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 93.3 0.65 1.4E-05 30.5 6.4 62 239-305 22-83 (103)
287 PF13431 TPR_17: Tetratricopep 93.2 0.12 2.6E-06 26.7 2.6 25 116-140 9-33 (34)
288 PRK15180 Vi polysaccharide bio 93.1 5.6 0.00012 34.8 13.4 53 165-218 334-386 (831)
289 PF04184 ST7: ST7 protein; In 93.0 1.1 2.5E-05 39.1 9.4 78 52-129 263-340 (539)
290 PF13929 mRNA_stabil: mRNA sta 92.7 3.9 8.4E-05 33.3 11.4 145 51-199 134-288 (292)
291 PF02284 COX5A: Cytochrome c o 92.7 0.64 1.4E-05 30.9 5.9 47 259-305 40-86 (108)
292 PF13431 TPR_17: Tetratricopep 92.6 0.2 4.3E-06 25.9 3.0 22 223-244 12-33 (34)
293 PF07079 DUF1347: Protein of u 92.6 6.4 0.00014 34.2 24.8 259 23-295 16-329 (549)
294 KOG1550 Extracellular protein 92.5 8.5 0.00018 35.3 17.7 179 64-253 228-426 (552)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 92.3 1.3 2.8E-05 29.2 6.8 44 208-251 26-69 (103)
296 PF02284 COX5A: Cytochrome c o 92.2 2.4 5.2E-05 28.3 8.8 43 33-75 30-72 (108)
297 PF07719 TPR_2: Tetratricopept 92.2 0.34 7.4E-06 24.6 3.6 28 226-253 3-30 (34)
298 KOG1920 IkappaB kinase complex 92.0 13 0.00029 36.5 21.1 114 122-252 910-1027(1265)
299 PF13762 MNE1: Mitochondrial s 91.7 3.4 7.5E-05 29.8 9.2 81 51-133 42-128 (145)
300 PF02259 FAT: FAT domain; Int 91.4 8.1 0.00018 32.8 22.2 52 20-75 5-56 (352)
301 PF13374 TPR_10: Tetratricopep 91.3 0.68 1.5E-05 24.8 4.4 28 14-41 3-30 (42)
302 KOG4234 TPR repeat-containing 91.2 3.7 8.1E-05 31.4 9.2 93 126-219 101-198 (271)
303 PF13374 TPR_10: Tetratricopep 91.2 0.73 1.6E-05 24.7 4.4 28 85-112 3-30 (42)
304 PF09613 HrpB1_HrpK: Bacterial 91.1 4.8 0.0001 29.6 12.2 51 166-218 22-73 (160)
305 PF07035 Mic1: Colon cancer-as 91.0 5.2 0.00011 29.8 15.7 32 70-102 16-47 (167)
306 PF00515 TPR_1: Tetratricopept 90.9 1 2.2E-05 22.9 4.6 27 86-112 3-29 (34)
307 KOG1586 Protein required for f 90.7 6.9 0.00015 30.8 14.5 58 238-295 128-185 (288)
308 PF00637 Clathrin: Region in C 90.5 0.28 6.1E-06 35.5 3.0 129 18-169 12-140 (143)
309 PF13170 DUF4003: Protein of u 90.2 9.7 0.00021 31.6 22.8 150 100-252 78-245 (297)
310 PF11207 DUF2989: Protein of u 90.0 7.1 0.00015 30.0 9.9 79 58-140 117-198 (203)
311 PF11207 DUF2989: Protein of u 89.9 4.6 0.0001 31.0 8.8 72 171-243 123-197 (203)
312 PF07719 TPR_2: Tetratricopept 89.3 1.1 2.5E-05 22.6 4.0 31 265-295 2-32 (34)
313 PF00637 Clathrin: Region in C 88.8 0.12 2.7E-06 37.4 -0.0 53 161-213 14-66 (143)
314 COG4455 ImpE Protein of avirul 88.3 3.1 6.6E-05 32.3 6.9 55 54-110 7-61 (273)
315 COG2976 Uncharacterized protei 88.2 9.8 0.00021 29.1 10.6 123 13-144 54-183 (207)
316 KOG0276 Vesicle coat complex C 88.1 19 0.00042 32.7 12.4 98 132-249 649-746 (794)
317 PF13174 TPR_6: Tetratricopept 88.0 1.8 3.8E-05 21.6 4.1 25 89-113 5-29 (33)
318 COG4455 ImpE Protein of avirul 87.6 7.8 0.00017 30.2 8.7 60 123-182 4-63 (273)
319 PF07163 Pex26: Pex26 protein; 87.3 12 0.00026 30.4 9.8 88 54-144 89-182 (309)
320 KOG4507 Uncharacterized conser 87.1 7.7 0.00017 35.0 9.5 151 46-200 569-721 (886)
321 PF06552 TOM20_plant: Plant sp 86.5 12 0.00025 28.3 8.9 41 240-293 96-136 (186)
322 PF13174 TPR_6: Tetratricopept 86.2 1.7 3.8E-05 21.6 3.5 24 230-253 6-29 (33)
323 PF13181 TPR_8: Tetratricopept 86.2 2.8 6.1E-05 21.1 4.3 27 15-41 3-29 (34)
324 PF13181 TPR_8: Tetratricopept 86.2 2.9 6.2E-05 21.1 4.3 27 86-112 3-29 (34)
325 PF04097 Nic96: Nup93/Nic96; 85.9 30 0.00066 32.3 14.1 83 55-144 265-351 (613)
326 KOG4077 Cytochrome c oxidase, 85.4 5.5 0.00012 27.8 6.3 59 242-305 67-125 (149)
327 TIGR03504 FimV_Cterm FimV C-te 85.0 3.4 7.5E-05 22.8 4.3 23 195-217 5-27 (44)
328 TIGR03504 FimV_Cterm FimV C-te 84.5 3.1 6.8E-05 23.0 4.0 24 19-42 5-28 (44)
329 PF02259 FAT: FAT domain; Int 84.2 25 0.00054 29.9 21.7 28 12-41 30-57 (352)
330 KOG0403 Neoplastic transformat 84.0 29 0.00062 30.4 12.7 59 267-325 512-573 (645)
331 TIGR02561 HrpB1_HrpK type III 83.8 14 0.00031 26.8 10.6 19 94-112 54-72 (153)
332 PF13934 ELYS: Nuclear pore co 83.5 20 0.00044 28.4 10.3 109 42-165 73-183 (226)
333 COG2909 MalT ATP-dependent tra 83.3 44 0.00095 32.1 23.4 195 94-293 425-647 (894)
334 PF13929 mRNA_stabil: mRNA sta 83.0 25 0.00053 28.9 15.2 135 99-234 143-288 (292)
335 PF11848 DUF3368: Domain of un 82.9 6.4 0.00014 22.2 5.1 35 22-56 11-45 (48)
336 PF07721 TPR_4: Tetratricopept 82.8 3.2 6.8E-05 19.7 3.3 15 127-141 8-22 (26)
337 KOG4648 Uncharacterized conser 82.6 16 0.00036 30.6 9.0 93 92-188 105-197 (536)
338 PHA02875 ankyrin repeat protei 82.6 33 0.00071 30.1 14.4 199 4-224 21-230 (413)
339 PF07163 Pex26: Pex26 protein; 82.3 23 0.00051 28.8 9.4 19 163-181 127-145 (309)
340 TIGR02508 type_III_yscG type I 82.2 12 0.00027 25.0 7.9 57 232-299 47-103 (115)
341 PF07443 HARP: HepA-related pr 82.2 0.53 1.2E-05 27.3 0.4 37 312-348 9-45 (55)
342 PF11846 DUF3366: Domain of un 81.8 12 0.00027 28.6 8.0 37 259-295 139-175 (193)
343 COG3947 Response regulator con 81.4 29 0.00062 28.6 15.1 56 267-322 282-340 (361)
344 KOG1258 mRNA processing protei 81.3 42 0.00092 30.5 21.1 186 81-278 294-489 (577)
345 KOG1586 Protein required for f 81.3 25 0.00055 27.9 18.6 14 61-74 27-40 (288)
346 PF09477 Type_III_YscG: Bacter 81.2 14 0.00031 25.0 7.6 32 261-294 68-99 (116)
347 PF14689 SPOB_a: Sensor_kinase 80.8 7.9 0.00017 23.3 5.2 27 264-290 23-49 (62)
348 COG4785 NlpI Lipoprotein NlpI, 80.7 25 0.00055 27.5 14.8 179 61-253 78-266 (297)
349 smart00028 TPR Tetratricopepti 80.6 3.4 7.3E-05 19.7 3.3 25 227-251 4-28 (34)
350 PF14689 SPOB_a: Sensor_kinase 80.6 9.5 0.00021 22.9 5.5 47 205-253 6-52 (62)
351 PF11817 Foie-gras_1: Foie gra 80.5 16 0.00036 29.4 8.5 64 227-290 181-244 (247)
352 PF10579 Rapsyn_N: Rapsyn N-te 80.5 6.7 0.00015 24.8 4.8 47 236-287 18-66 (80)
353 KOG4648 Uncharacterized conser 80.2 6.9 0.00015 32.7 6.1 83 127-217 104-193 (536)
354 PF10345 Cohesin_load: Cohesin 80.2 52 0.0011 30.8 19.1 184 31-216 39-252 (608)
355 COG0735 Fur Fe2+/Zn2+ uptake r 80.2 11 0.00023 27.5 6.6 58 4-62 12-69 (145)
356 PF10579 Rapsyn_N: Rapsyn N-te 80.0 8.3 0.00018 24.4 5.1 47 60-106 18-65 (80)
357 KOG1258 mRNA processing protei 79.9 48 0.001 30.2 30.1 31 275-305 452-482 (577)
358 KOG0276 Vesicle coat complex C 79.5 36 0.00079 31.1 10.5 103 92-215 645-747 (794)
359 KOG4507 Uncharacterized conser 79.3 48 0.001 30.3 11.1 147 152-305 569-717 (886)
360 TIGR02561 HrpB1_HrpK type III 78.9 22 0.00049 25.9 11.4 18 200-217 55-72 (153)
361 KOG4077 Cytochrome c oxidase, 78.9 17 0.00037 25.5 6.7 45 208-252 68-112 (149)
362 PF11846 DUF3366: Domain of un 77.9 11 0.00024 28.9 6.6 32 81-112 141-172 (193)
363 COG2976 Uncharacterized protei 75.9 34 0.00073 26.3 13.5 92 196-294 96-189 (207)
364 KOG0991 Replication factor C, 75.5 39 0.00085 26.9 10.1 139 158-305 134-279 (333)
365 PHA02875 ankyrin repeat protei 75.4 56 0.0012 28.6 13.8 202 20-246 6-221 (413)
366 KOG4521 Nuclear pore complex, 75.2 94 0.002 31.1 13.0 151 92-248 928-1126(1480)
367 KOG1464 COP9 signalosome, subu 75.2 43 0.00094 27.2 18.0 210 43-253 21-260 (440)
368 COG3947 Response regulator con 74.1 49 0.0011 27.3 15.0 74 192-266 282-355 (361)
369 KOG2063 Vacuolar assembly/sort 74.1 91 0.002 30.4 15.4 37 164-200 601-637 (877)
370 KOG2062 26S proteasome regulat 73.0 86 0.0019 29.7 17.0 184 31-218 41-239 (929)
371 PRK11639 zinc uptake transcrip 72.8 18 0.00039 27.2 6.3 61 39-101 17-77 (169)
372 PF11663 Toxin_YhaV: Toxin wit 72.5 4 8.7E-05 28.9 2.5 32 96-130 107-138 (140)
373 PRK09687 putative lyase; Provi 71.8 56 0.0012 27.0 26.5 221 46-295 35-265 (280)
374 PF12862 Apc5: Anaphase-promot 71.8 25 0.00054 23.2 6.3 58 235-293 9-70 (94)
375 PF11663 Toxin_YhaV: Toxin wit 71.3 5.2 0.00011 28.3 2.9 31 25-57 107-137 (140)
376 KOG4234 TPR repeat-containing 71.3 46 0.001 25.8 10.3 93 199-298 105-202 (271)
377 PF10366 Vps39_1: Vacuolar sor 70.9 31 0.00066 23.6 6.8 26 192-217 42-67 (108)
378 PF14669 Asp_Glu_race_2: Putat 70.7 46 0.00099 25.5 15.5 177 7-213 2-205 (233)
379 KOG4567 GTPase-activating prot 70.6 27 0.00058 28.9 7.0 43 175-217 264-306 (370)
380 KOG4567 GTPase-activating prot 70.6 61 0.0013 27.0 9.5 69 69-144 264-342 (370)
381 PRK10564 maltose regulon perip 70.4 13 0.00027 30.7 5.3 37 80-116 252-289 (303)
382 COG0735 Fur Fe2+/Zn2+ uptake r 69.2 30 0.00065 25.2 6.6 46 230-280 26-71 (145)
383 cd08819 CARD_MDA5_2 Caspase ac 69.0 29 0.00063 22.6 6.8 63 69-139 23-85 (88)
384 PRK09462 fur ferric uptake reg 68.8 31 0.00066 25.2 6.7 59 4-63 8-67 (148)
385 smart00386 HAT HAT (Half-A-TPR 68.5 9.4 0.0002 18.6 3.0 28 278-305 1-28 (33)
386 TIGR02508 type_III_yscG type I 68.3 25 0.00055 23.6 5.3 80 27-114 19-98 (115)
387 PF11838 ERAP1_C: ERAP1-like C 68.3 71 0.0015 26.8 15.4 146 64-215 146-305 (324)
388 cd08819 CARD_MDA5_2 Caspase ac 68.0 31 0.00066 22.5 6.6 66 173-244 21-86 (88)
389 PF09454 Vps23_core: Vps23 cor 67.4 15 0.00032 22.4 4.0 51 10-61 5-55 (65)
390 PRK09687 putative lyase; Provi 66.8 72 0.0016 26.3 26.8 216 82-324 35-263 (280)
391 cd00280 TRFH Telomeric Repeat 66.3 56 0.0012 24.9 7.9 48 205-252 85-139 (200)
392 KOG3807 Predicted membrane pro 66.2 53 0.0012 27.6 8.0 56 89-144 280-335 (556)
393 PRK10564 maltose regulon perip 65.4 18 0.0004 29.7 5.3 40 46-86 254-294 (303)
394 PF13762 MNE1: Mitochondrial s 65.2 51 0.0011 24.0 11.0 82 192-278 42-129 (145)
395 KOG2066 Vacuolar assembly/sort 65.1 1.3E+02 0.0028 28.7 17.1 101 20-132 363-467 (846)
396 PF07575 Nucleopor_Nup85: Nup8 64.5 34 0.00075 31.6 7.6 75 104-181 390-465 (566)
397 KOG0890 Protein kinase of the 63.1 2.4E+02 0.0052 31.1 24.9 149 18-177 1388-1541(2382)
398 KOG3807 Predicted membrane pro 62.6 53 0.0011 27.6 7.3 59 54-112 281-339 (556)
399 KOG2908 26S proteasome regulat 62.5 96 0.0021 26.3 9.3 74 58-131 85-167 (380)
400 KOG2062 26S proteasome regulat 62.2 1.5E+02 0.0032 28.3 13.4 119 198-323 510-634 (929)
401 PRK11619 lytic murein transgly 62.1 1.4E+02 0.0031 28.2 24.4 112 203-322 255-373 (644)
402 KOG2063 Vacuolar assembly/sort 61.8 1.7E+02 0.0036 28.8 14.9 187 121-310 505-745 (877)
403 cd07153 Fur_like Ferric uptake 61.4 31 0.00068 23.7 5.4 48 18-65 5-52 (116)
404 KOG1464 COP9 signalosome, subu 60.9 91 0.002 25.5 21.7 208 6-215 19-257 (440)
405 KOG0376 Serine-threonine phosp 60.9 35 0.00077 30.1 6.4 50 166-217 16-66 (476)
406 PF10345 Cohesin_load: Cohesin 60.0 1.5E+02 0.0033 27.8 19.8 197 47-253 29-254 (608)
407 KOG0686 COP9 signalosome, subu 59.8 1.2E+02 0.0026 26.5 14.2 180 84-272 150-352 (466)
408 PF12862 Apc5: Anaphase-promot 59.5 48 0.001 21.8 7.8 24 90-113 47-70 (94)
409 PRK15180 Vi polysaccharide bio 59.4 1.3E+02 0.0029 26.9 15.1 83 58-144 333-415 (831)
410 PF11848 DUF3368: Domain of un 58.5 31 0.00068 19.4 4.9 30 201-230 14-43 (48)
411 PF01475 FUR: Ferric uptake re 58.4 30 0.00066 24.0 4.9 48 17-64 11-58 (120)
412 COG5108 RPO41 Mitochondrial DN 58.3 1E+02 0.0022 28.9 8.9 78 159-236 33-115 (1117)
413 PF07575 Nucleopor_Nup85: Nup8 58.2 1.6E+02 0.0034 27.4 11.7 23 13-36 149-171 (566)
414 PF14561 TPR_20: Tetratricopep 57.9 51 0.0011 21.6 7.2 51 85-135 23-73 (90)
415 KOG4642 Chaperone-dependent E3 57.8 98 0.0021 24.9 10.5 78 62-144 24-102 (284)
416 PF06552 TOM20_plant: Plant sp 57.8 82 0.0018 24.0 11.6 76 101-184 52-137 (186)
417 PF13934 ELYS: Nuclear pore co 57.0 98 0.0021 24.6 13.8 104 122-238 78-186 (226)
418 COG2178 Predicted RNA-binding 56.3 91 0.002 24.0 9.4 93 195-293 35-150 (204)
419 COG5159 RPN6 26S proteasome re 56.2 1.2E+02 0.0025 25.2 11.4 168 125-293 8-194 (421)
420 PF09797 NatB_MDM20: N-acetylt 56.1 1.3E+02 0.0029 25.9 10.7 125 50-178 182-310 (365)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 56.0 70 0.0015 22.6 9.6 43 102-144 81-123 (126)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 55.4 71 0.0015 22.5 8.6 42 242-288 81-123 (126)
423 PRK10941 hypothetical protein; 54.9 1.2E+02 0.0026 24.9 10.3 75 88-164 185-261 (269)
424 PRK10941 hypothetical protein; 54.3 1.2E+02 0.0026 24.9 10.7 77 52-130 185-261 (269)
425 PF04090 RNA_pol_I_TF: RNA pol 54.0 73 0.0016 24.7 6.5 59 265-323 42-104 (199)
426 COG2909 MalT ATP-dependent tra 53.3 2.3E+02 0.0049 27.7 24.9 229 59-289 426-684 (894)
427 PF04097 Nic96: Nup93/Nic96; 53.3 2E+02 0.0043 27.1 12.4 43 89-133 116-158 (613)
428 PF09454 Vps23_core: Vps23 cor 53.3 27 0.00059 21.2 3.4 49 46-96 6-54 (65)
429 KOG0686 COP9 signalosome, subu 52.7 1.6E+02 0.0035 25.8 13.5 24 50-73 152-175 (466)
430 COG5108 RPO41 Mitochondrial DN 52.5 1.3E+02 0.0028 28.3 8.6 74 18-95 33-114 (1117)
431 PF14853 Fis1_TPR_C: Fis1 C-te 52.0 46 0.00099 19.3 5.7 24 230-253 7-30 (53)
432 PRK09857 putative transposase; 51.5 1.2E+02 0.0025 25.3 7.9 65 267-331 209-276 (292)
433 PF03745 DUF309: Domain of unk 51.4 52 0.0011 19.8 5.2 16 25-40 11-26 (62)
434 KOG4814 Uncharacterized conser 51.2 79 0.0017 29.3 7.1 91 226-323 357-456 (872)
435 PF09670 Cas_Cas02710: CRISPR- 50.8 1.7E+02 0.0037 25.5 10.7 54 21-75 139-196 (379)
436 PF09477 Type_III_YscG: Bacter 50.8 79 0.0017 21.7 8.7 81 26-114 19-99 (116)
437 KOG3364 Membrane protein invol 50.6 84 0.0018 22.6 5.8 76 12-90 34-110 (149)
438 PRK09462 fur ferric uptake reg 50.5 83 0.0018 22.9 6.3 36 240-280 33-68 (148)
439 TIGR03581 EF_0839 conserved hy 50.3 83 0.0018 24.6 6.2 80 64-144 137-232 (236)
440 PF10255 Paf67: RNA polymerase 49.4 1.8E+02 0.004 25.5 14.0 60 157-216 125-191 (404)
441 PF11123 DNA_Packaging_2: DNA 49.1 60 0.0013 20.3 4.3 33 204-237 12-44 (82)
442 KOG3677 RNA polymerase I-assoc 48.8 1.9E+02 0.0041 25.4 9.6 147 157-311 238-398 (525)
443 PHA03100 ankyrin repeat protei 48.7 2E+02 0.0044 25.8 11.5 19 53-71 37-55 (480)
444 PF10255 Paf67: RNA polymerase 48.7 1.9E+02 0.0041 25.4 13.6 60 51-110 125-190 (404)
445 KOG2471 TPR repeat-containing 48.2 2.1E+02 0.0046 25.8 9.8 107 128-236 248-381 (696)
446 PF08424 NRDE-2: NRDE-2, neces 47.6 1.7E+02 0.0038 24.7 16.6 97 11-110 17-128 (321)
447 PF11817 Foie-gras_1: Foie gra 47.3 1.5E+02 0.0033 23.9 8.6 58 158-215 182-244 (247)
448 PF10366 Vps39_1: Vacuolar sor 47.1 91 0.002 21.3 7.3 26 87-112 42-67 (108)
449 KOG4814 Uncharacterized conser 47.0 1.8E+02 0.004 27.2 8.6 86 130-216 364-455 (872)
450 cd07153 Fur_like Ferric uptake 46.8 51 0.0011 22.6 4.6 41 236-281 12-52 (116)
451 KOG0376 Serine-threonine phosp 46.1 91 0.002 27.7 6.6 107 90-200 10-116 (476)
452 PF09986 DUF2225: Uncharacteri 46.0 1.5E+02 0.0032 23.4 9.7 68 226-295 120-196 (214)
453 KOG2659 LisH motif-containing 45.8 1.5E+02 0.0033 23.5 9.4 59 122-181 28-91 (228)
454 smart00777 Mad3_BUB1_I Mad3/BU 45.6 1.1E+02 0.0023 21.7 8.7 43 102-144 81-123 (125)
455 COG0790 FOG: TPR repeat, SEL1 45.4 1.7E+02 0.0037 24.0 19.4 186 98-297 55-270 (292)
456 KOG2471 TPR repeat-containing 45.2 2.4E+02 0.0051 25.6 15.4 281 24-308 28-380 (696)
457 KOG0292 Vesicle coat complex C 45.0 2.6E+02 0.0057 27.4 9.5 157 54-253 626-782 (1202)
458 KOG1308 Hsp70-interacting prot 44.7 21 0.00045 30.0 2.5 118 130-251 124-242 (377)
459 KOG3636 Uncharacterized conser 44.6 2.2E+02 0.0047 25.2 8.4 88 7-96 177-272 (669)
460 PF14669 Asp_Glu_race_2: Putat 44.2 1.5E+02 0.0032 22.9 16.3 60 229-288 137-205 (233)
461 PF04910 Tcf25: Transcriptiona 43.9 2.1E+02 0.0046 24.7 20.2 104 125-234 108-234 (360)
462 PF09986 DUF2225: Uncharacteri 43.7 1.6E+02 0.0035 23.2 8.6 26 89-114 170-195 (214)
463 PF08424 NRDE-2: NRDE-2, neces 43.4 2E+02 0.0044 24.3 16.9 122 171-294 48-184 (321)
464 smart00638 LPD_N Lipoprotein N 43.3 2.8E+02 0.006 25.8 21.2 217 14-234 341-573 (574)
465 PF02184 HAT: HAT (Half-A-TPR) 43.2 47 0.001 16.9 3.4 23 204-228 2-24 (32)
466 PHA03100 ankyrin repeat protei 42.5 2.5E+02 0.0055 25.2 10.4 26 19-48 38-63 (480)
467 PF08870 DUF1832: Domain of un 42.4 1.1E+02 0.0025 21.1 5.6 21 30-50 6-28 (113)
468 PF09868 DUF2095: Uncharacteri 42.4 1.1E+02 0.0024 21.1 5.6 23 21-43 69-91 (128)
469 PRK11639 zinc uptake transcrip 41.6 1.5E+02 0.0032 22.2 7.1 62 215-282 17-78 (169)
470 PRK09857 putative transposase; 41.5 2.1E+02 0.0045 23.9 8.0 64 88-153 210-274 (292)
471 PF04190 DUF410: Protein of un 41.2 2E+02 0.0043 23.5 13.8 21 273-293 150-170 (260)
472 COG4259 Uncharacterized protei 41.0 1.1E+02 0.0024 20.6 6.8 21 124-144 76-96 (121)
473 PF00244 14-3-3: 14-3-3 protei 40.2 1.9E+02 0.0042 23.1 14.0 57 54-111 7-64 (236)
474 PF01475 FUR: Ferric uptake re 39.9 51 0.0011 22.9 3.7 49 229-282 12-60 (120)
475 TIGR02710 CRISPR-associated pr 39.6 2.6E+02 0.0056 24.4 11.5 54 21-74 138-197 (380)
476 cd00245 Glm_e Coenzyme B12-dep 39.4 66 0.0014 28.3 4.8 168 167-348 24-218 (428)
477 COG2405 Predicted nucleic acid 39.2 85 0.0018 22.6 4.4 30 60-90 121-150 (157)
478 PRK08691 DNA polymerase III su 38.5 3.7E+02 0.008 25.8 11.7 73 42-118 194-279 (709)
479 PF00244 14-3-3: 14-3-3 protei 38.0 2.1E+02 0.0046 22.9 12.2 58 18-75 6-64 (236)
480 PF09670 Cas_Cas02710: CRISPR- 37.9 2.8E+02 0.006 24.2 11.6 52 130-182 141-197 (379)
481 PF02847 MA3: MA3 domain; Int 37.2 80 0.0017 21.5 4.3 24 17-40 6-29 (113)
482 PF12926 MOZART2: Mitotic-spin 36.8 1.2E+02 0.0026 19.8 8.6 42 34-75 29-70 (88)
483 COG4003 Uncharacterized protei 36.0 79 0.0017 20.2 3.5 26 18-43 36-61 (98)
484 PF02607 B12-binding_2: B12 bi 35.8 91 0.002 19.5 4.1 38 24-61 12-49 (79)
485 KOG2297 Predicted translation 35.6 2.7E+02 0.0058 23.4 15.3 19 265-283 322-340 (412)
486 KOG2422 Uncharacterized conser 35.5 3.7E+02 0.0079 25.0 15.4 120 133-252 251-406 (665)
487 PF09868 DUF2095: Uncharacteri 34.4 1.5E+02 0.0033 20.5 4.9 23 162-184 69-91 (128)
488 cd00280 TRFH Telomeric Repeat 34.2 2.2E+02 0.0047 21.9 9.2 21 197-217 119-139 (200)
489 PF02847 MA3: MA3 domain; Int 33.9 1.5E+02 0.0033 20.1 6.8 20 125-144 7-26 (113)
490 KOG1308 Hsp70-interacting prot 33.9 60 0.0013 27.5 3.6 94 164-265 124-218 (377)
491 PF15297 CKAP2_C: Cytoskeleton 33.9 1.4E+02 0.003 25.5 5.6 48 16-63 143-190 (353)
492 PF04190 DUF410: Protein of un 33.8 2.6E+02 0.0057 22.8 18.1 24 121-144 91-114 (260)
493 PRK07003 DNA polymerase III su 32.5 4.9E+02 0.011 25.5 11.7 14 12-25 132-145 (830)
494 KOG2659 LisH motif-containing 31.9 2.6E+02 0.0057 22.2 11.0 97 44-144 22-127 (228)
495 KOG1166 Mitotic checkpoint ser 31.5 2.1E+02 0.0046 28.6 7.2 59 96-154 90-149 (974)
496 KOG0545 Aryl-hydrocarbon recep 30.9 2.9E+02 0.0064 22.5 8.8 92 91-182 185-292 (329)
497 KOG2066 Vacuolar assembly/sort 29.6 5.3E+02 0.011 25.0 22.2 121 12-144 391-529 (846)
498 COG0819 TenA Putative transcri 29.5 2.9E+02 0.0062 21.9 7.8 26 6-31 102-127 (218)
499 COG4976 Predicted methyltransf 29.5 1.6E+02 0.0035 23.6 5.0 53 235-294 6-59 (287)
500 PRK10292 hypothetical protein; 29.4 1.3E+02 0.0027 18.2 3.4 31 35-65 21-51 (69)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-59 Score=429.82 Aligned_cols=331 Identities=17% Similarity=0.256 Sum_probs=309.8
Q ss_pred ChhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC
Q 018924 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV 80 (349)
Q Consensus 1 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 80 (349)
|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. +.++
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~-~~Gv 538 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR-SKNV 538 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999998 8899
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH--hhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhH
Q 018924 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEE--QIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGY 157 (349)
Q Consensus 81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 157 (349)
.||..+|+.||.+|++.|++++|.++|++|.. .++.|+. .+|++++.+|++.|++++|.++|+ |...+++|+..+|
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 99999999999999999999999999999976 5678888 899999999999999999999999 8888999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 158 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCchhHHHHh-hhhhcC--cc
Q 018924 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLL-DNVQNG--KS 313 (349)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~-~~~~~g--~~ 313 (349)
|++++|.++|++|... ++.||..+|+.+|.+|++.|++++|.++|++|...+. |+..+|+.++ ++++.| ++
T Consensus 698 G~~eeA~~lf~eM~~~-----g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 698 KNWKKALELYEDIKSI-----KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999887 9999999999999999999999999999999998876 8999999999 999999 89
Q ss_pred hHHHHHHHHhCCCCCCcccccCCCC
Q 018924 314 NLETLRELYGNSLAGNEETLSGPEG 338 (349)
Q Consensus 314 a~~~~~~m~~~~~~p~~~t~~~~l~ 338 (349)
|.+++++|.+.|+.||..+|..+++
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999988877664
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.8e-58 Score=423.50 Aligned_cols=321 Identities=13% Similarity=0.159 Sum_probs=312.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. +.|+.||..+|++|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHH--hhccCChhhHHHHHHHHhcc
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYK--KAVKVLNNGYRNVISSLLKL 167 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~--~~~~~~~~~~~~li~~~~~~ 167 (349)
|.+|++.|++++|.++|++|.+.|+.|+. .+|+.+|.+|++.|++++|.++|+ |.. .++.||..+|+.+|.+|++.
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDR-VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999 999999999999999999999999 655 57889999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 247 (349)
|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 248 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
+.|.+. |+.||..+|+.+|.+|++.|++++|.++|++|...+. |+..+|+.++ +|++.| ++|.++|++|.+
T Consensus 673 ~eM~k~-----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 673 QDARKQ-----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHc-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998 9999999999999999999999999999999998876 9999999999 999999 999999999999
Q ss_pred CCCCCCcccccCCCC
Q 018924 324 NSLAGNEETLSGPEG 338 (349)
Q Consensus 324 ~~~~p~~~t~~~~l~ 338 (349)
.|+.||..||..++.
T Consensus 748 ~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 748 LGLCPNTITYSILLV 762 (1060)
T ss_pred cCCCCCHHHHHHHHH
Confidence 999999999876653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-52 Score=382.51 Aligned_cols=317 Identities=17% Similarity=0.211 Sum_probs=270.7
Q ss_pred hhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc-----
Q 018924 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA----- 76 (349)
Q Consensus 2 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----- 76 (349)
..|.+.|+.||..+||.|+..|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|..
T Consensus 147 ~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666666666664 25666666666666666666666666666651
Q ss_pred -----------------------------CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924 77 -----------------------------DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127 (349)
Q Consensus 77 -----------------------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (349)
+.|+.||..+|++|+++|+++|++++|.++|++|. .++. .+||+++
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~-vt~n~li 297 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTT-VAWNSML 297 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCCh-hHHHHHH
Confidence 33445566667888999999999999999999984 4567 8999999
Q ss_pred HHHhhcCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924 128 TLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 206 (349)
.+|++.|++++|.++|+ |...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 018924 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286 (349)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 286 (349)
+|.++|++|.+ ||..+||.||.+|+++|+.++|.++|++|.+. |+.||..||+.++.+|++.|++++|.++
T Consensus 378 ~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999999976 79999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHhhC-CC-CCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCCC
Q 018924 287 IELLNDK-GF-IPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEGD 339 (349)
Q Consensus 287 ~~~~~~~-~~-~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~~ 339 (349)
|+.|.+. +. |+..+|+.++ +|++.| ++|.+++++| ++.|+..+|..+++.
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA 503 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 9999864 55 8889999999 999999 9999998876 578999887766543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-51 Score=375.14 Aligned_cols=319 Identities=15% Similarity=0.161 Sum_probs=251.1
Q ss_pred ChhhhhhC-CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCC
Q 018924 1 MQKMRDLG-LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPN 79 (349)
Q Consensus 1 ~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 79 (349)
|+.|...+ +.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. +
T Consensus 110 f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~-- 186 (697)
T PLN03081 110 FEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-E-- 186 (697)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-C--
Confidence 45677654 7899999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHH
Q 018924 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYR 158 (349)
Q Consensus 80 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~ 158 (349)
||..+|++++.+|++.|++++|.++|++|.+.|+.|+. .+|+.++.+++..|..+.+.+++. +...+..||..+|+
T Consensus 187 --~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 187 --RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP-RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred --CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh-hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 78899999999999999999999999999988888877 777777777777777777777766 66666677777777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924 159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238 (349)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 238 (349)
.++.+|++.|++++|.++|++|. .+|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 77777777777777777777663 34666777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchH
Q 018924 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNL 315 (349)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~ 315 (349)
++++|.+++..|.+. |+.||..+++.|+.+|++.|++++|.++|++|.+ ++..+|+.++ +|++.| ++|+
T Consensus 340 ~~~~a~~i~~~m~~~-----g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 340 LLEHAKQAHAGLIRT-----GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred chHHHHHHHHHHHHh-----CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHH
Confidence 777777777777766 7777777777777777777777777777776654 4666677777 777777 6777
Q ss_pred HHHHHHHhCCCCCCcccccCCC
Q 018924 316 ETLRELYGNSLAGNEETLSGPE 337 (349)
Q Consensus 316 ~~~~~m~~~~~~p~~~t~~~~l 337 (349)
++|++|.+.|+.||..||..++
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHH
Confidence 7777777777777777765443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-51 Score=383.56 Aligned_cols=318 Identities=20% Similarity=0.240 Sum_probs=277.5
Q ss_pred ChhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC
Q 018924 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV 80 (349)
Q Consensus 1 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 80 (349)
|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+. +.|+
T Consensus 245 f~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~-~~g~ 319 (857)
T PLN03077 245 FDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV-KTGF 319 (857)
T ss_pred HhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH-HhCC
Confidence 456654 78889999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHH
Q 018924 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN 159 (349)
Q Consensus 81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 159 (349)
.||..+|++|+.+|++.|++++|.++|++|. .|+. .+|++++.+|++.|++++|+++|+ |...++.||..||+.
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~-~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA-VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe-eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 9999999999999999999999999999985 4677 899999999999999999999999 888999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 239 (349)
++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNR 470 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999876 678899999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-------------------------
Q 018924 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG------------------------- 294 (349)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------------------------- 294 (349)
.++|.++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.+
T Consensus 471 ~~eA~~lf~~m~~------~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 471 CFEALIFFRQMLL------TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHHHHHHHHHHHh------CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 9999999999874 677888877776665555444444444444333322
Q ss_pred ------CCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCC
Q 018924 295 ------FIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEG 338 (349)
Q Consensus 295 ------~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~ 338 (349)
.++..+|+.++ +|++.| ++|+++|++|.+.|+.||..||..++.
T Consensus 545 ~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 545 NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred HHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 46778899999 999999 899999999999999999999877664
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-49 Score=371.35 Aligned_cols=317 Identities=17% Similarity=0.119 Sum_probs=239.3
Q ss_pred ChhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC
Q 018924 1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV 80 (349)
Q Consensus 1 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 80 (349)
|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~--- 351 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-T--- 351 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-C---
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHH
Q 018924 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN 159 (349)
Q Consensus 81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 159 (349)
||..+|+++|.+|++.|++++|.++|++|.+.|+.|+. .+|+.++.+|++.|+++.|.++++ +...|..|+..+|+.
T Consensus 352 -~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 352 -KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred -CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 67789999999999999999999999999999999999 999999999999999999999999 888899999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 239 (349)
++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999999885 35677888888888888888888888888865 466666555444444433333
Q ss_pred HHHHHHHHHHHHHHhcccccC------------------------------CCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018924 240 IHKAVEAMKKVLAAYQTLVKW------------------------------KPSVESLAACLDYFKDEGDIGGAENFIEL 289 (349)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~------------------------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 289 (349)
++.+.+++..+.+. |+ .||..+|+.+|.+|++.|+.++|.++|++
T Consensus 505 l~~~~~i~~~~~~~-----g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 505 LMCGKEIHAHVLRT-----GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHhHHHHHHHHHh-----CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333333222 11 23444444444444444444444444444
Q ss_pred HhhCCC-CCchhHHHHh-hhhhcC--cchHHHHHHHH-hCCCCCCcccc
Q 018924 290 LNDKGF-IPTDLQDKLL-DNVQNG--KSNLETLRELY-GNSLAGNEETL 333 (349)
Q Consensus 290 ~~~~~~-~~~~~~~~l~-~~~~~g--~~a~~~~~~m~-~~~~~p~~~t~ 333 (349)
|.+.|. |+..+|+.++ +|.+.| ++|.++|++|. +.|+.|+..+|
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 444433 4444444444 444444 44444444444 34444444443
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=7.3e-24 Score=182.55 Aligned_cols=300 Identities=17% Similarity=0.150 Sum_probs=243.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc---HHHHHHHHHHHhh
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD---WVIYATVGNGYGK 96 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 96 (349)
...+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+. ..+..++ ...+..++..|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLL-SRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999998743 356689999999999999999999999998 4332222 3567889999999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCC----hhhHHHHHHHHhccCCHH
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVL----NNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~----~~~~~~li~~~~~~~~~~ 171 (349)
.|++++|..+|+++.+. .|....+++.++..+...|++++|.+.++ +...+..++ ...+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999875 33333789999999999999999999999 443332221 124566778888999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
+|...++++.+.. +.+...+..+...+.+.|++++|.++|+++.+.++.....+++.++.+|...|++++|.+.++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998764 344567788889999999999999999999986544335678899999999999999999999998
Q ss_pred HHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhh---cC--cchHHHHHHHHhCC
Q 018924 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQ---NG--KSNLETLRELYGNS 325 (349)
Q Consensus 252 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~---~g--~~a~~~~~~m~~~~ 325 (349)
+. .|+...+..+...+.+.|++++|..+++++.+.. |+...++.++ .+.. .| ++++.++++|.+.+
T Consensus 277 ~~-------~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 277 EE-------YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH-PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred Hh-------CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 54 6777777889999999999999999999988774 5556777777 5443 34 78999999999988
Q ss_pred CCCCccc
Q 018924 326 LAGNEET 332 (349)
Q Consensus 326 ~~p~~~t 332 (349)
+.|++.-
T Consensus 349 ~~~~p~~ 355 (389)
T PRK11788 349 LKRKPRY 355 (389)
T ss_pred HhCCCCE
Confidence 8877763
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=3.6e-22 Score=172.07 Aligned_cols=274 Identities=13% Similarity=0.053 Sum_probs=227.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD---RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY 87 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 87 (349)
.+..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...+.+.|++++|..+|+++. +... ++..++
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l-~~~~-~~~~~~ 144 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV-DEGD-FAEGAL 144 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCc-chHHHH
Confidence 3667899999999999999999999999987643222 2467888999999999999999999998 5433 567889
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
+.++..+.+.|++++|.+.++.+.+.++.+.. ...+..+...+...|++++|...|+......+.+...+..+...+
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 224 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHH
Confidence 99999999999999999999999886544322 124567788889999999999999943333444566788889999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 244 (349)
.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|.
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999876433334568889999999999999999999998864 66667788999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHhhCCC
Q 018924 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKD---EGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~ 295 (349)
.+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++
T Consensus 303 ~~l~~~l~~-------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 303 ALLREQLRR-------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHHHHh-------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 999999854 7999999988887764 5689999999999987643
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=1.4e-21 Score=186.13 Aligned_cols=300 Identities=14% Similarity=0.053 Sum_probs=229.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
.+...+..+...+.+.|++++|..+++.+.... +.+..+|..+..++...|++++|...++++. +... .+...+..+
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l 641 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL-ALQP-DSALALLLL 641 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CChHHHHHH
Confidence 456677788888888888888888888887653 4467788888888888888888888888887 4332 456677788
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL 170 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 170 (349)
..++.+.|++++|...|+++.+. .|+...++..++..+...|++++|..+++......+.+...+..+...+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 88888888888888888888764 3444468888888888888888888888844444456667777888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250 (349)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 250 (349)
++|...++.+.+.+ |+..++..+..++.+.|++++|...++.+.+..+. +...+..+...|...|++++|.+.|+++
T Consensus 720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 88888888887753 44466777888888888888888888888776543 6677778888888888888888888888
Q ss_pred HHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS 325 (349)
Q Consensus 251 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~ 325 (349)
.+. .+++...+..+...+...|+ ++|...++++....+.+...+..+. .+...| ++|.+.|+++.+.+
T Consensus 797 ~~~------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 797 VKK------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHh------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 764 23466777777778888888 7788888887777666666777777 777777 78888888887754
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=1.6e-21 Score=185.79 Aligned_cols=297 Identities=11% Similarity=0.009 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
...+..+...+...|++++|.+.|+++.+.+. .+..++..+...+.+.|+.++|..+++++. ..+. .+...+..++.
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~ 575 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAA-ELNP-QEIEPALALAQ 575 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-cchhHHHHHHH
Confidence 44455555555555555555555555554421 234455555555555555555555555544 2221 33334444555
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 172 (349)
.+.+.|++++|..+++++.+.. |+...+|..+..++...|++++|...|+......+.+...+..+...+...|++++
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555544321 22213455555555555555555555542222222333344444444445555555
Q ss_pred HHHHHHHHHh----------------------------------cCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 173 AEKIFEEWES----------------------------------QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 173 a~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
|..+++.+.+ .. +.+...+..+...+...|++++|...|+.+...
T Consensus 654 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 5555544444 32 223334444444444555555555555554443
Q ss_pred CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924 219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 219 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 298 (349)
+ |+..++..++.++.+.|++++|.+.++++.+. .+.+...+..+...|...|++++|...|+.+.+..+.+.
T Consensus 733 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 733 A--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred C--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH
Confidence 3 22234444444555555555555555555432 122344445555555555555555555555555555455
Q ss_pred hhHHHHh-hhhhcC-cchHHHHHHHHh
Q 018924 299 DLQDKLL-DNVQNG-KSNLETLRELYG 323 (349)
Q Consensus 299 ~~~~~l~-~~~~~g-~~a~~~~~~m~~ 323 (349)
..+..+. .+.+.| .+|+..+++...
T Consensus 805 ~~~~~l~~~~~~~~~~~A~~~~~~~~~ 831 (899)
T TIGR02917 805 VVLNNLAWLYLELKDPRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHh
Confidence 5555555 555554 445555555544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.2e-18 Score=157.86 Aligned_cols=298 Identities=9% Similarity=-0.002 Sum_probs=222.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
+...+..++.+....|++++|...|+++..... .+...+..+...+...|++++|...+++.. .... .+...+..+.
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al-~l~P-~~~~a~~~la 151 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAW-LAFS-GNSQIFALHL 151 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHHHH
Confidence 345556666777788999999999998887642 255677888888888999999999998887 4322 4466677888
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhc-cCChhhHHHHHHHHhccCCH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDL 170 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~ 170 (349)
..+...|++++|...++.+....+.+. ..+..+ ..+...|++++|...++...... .++...+..+..++...|++
T Consensus 152 ~~l~~~g~~~eA~~~~~~~~~~~P~~~--~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 152 RTLVLMDKELQAISLARTQAQEVPPRG--DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHCCChHHHHHHHHHHHHhCCCCH--HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 888999999999998888776543332 344443 34778899999998888322222 23334445566778888999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHH----HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK----AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246 (349)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 246 (349)
++|...++.+.+.. +.+...+..+...|...|++++ |...|++.....+. +...+..+...+...|++++|...
T Consensus 229 ~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 229 QEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999888764 4456677788888899998885 78888888876543 566788888889999999999999
Q ss_pred HHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924 247 MKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY 322 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~ 322 (349)
+++++.. .| +...+..+..++...|++++|...++.+....+.+...+..+. ++...| ++|...|++..
T Consensus 307 l~~al~l-------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 307 LQQSLAT-------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9998854 45 4556677778888999999999999888877665444444455 777778 88999998887
Q ss_pred hC
Q 018924 323 GN 324 (349)
Q Consensus 323 ~~ 324 (349)
+.
T Consensus 380 ~~ 381 (656)
T PRK15174 380 QA 381 (656)
T ss_pred Hh
Confidence 64
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.3e-18 Score=154.98 Aligned_cols=299 Identities=11% Similarity=0.016 Sum_probs=242.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG 95 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 95 (349)
...++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++. .... .+...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l-~~~P-~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLL-AVNV-CQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHH
Confidence 345677888999999999999999887544 34456666677788999999999999998 4343 45667888999999
Q ss_pred hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHH
Q 018924 96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 175 (349)
..|++++|...+++..+. .|+...++..+...+...|++++|...++......+.+...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 999999999999999874 566557899999999999999999999983333333333344333 34788999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH----HHHHHHHHH
Q 018924 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK----AVEAMKKVL 251 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~ 251 (349)
.++.+.+....++...+..+..++...|++++|...+++.....+. +...+..+...+...|++++ |...|++++
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999887643344445556678889999999999999999987643 57778889999999999986 899999998
Q ss_pred HHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCC
Q 018924 252 AAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLA 327 (349)
Q Consensus 252 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~ 327 (349)
.. .| +...+..+...+...|++++|...+++.....+.+...+..+. .+.+.| ++|+..|+++... .
T Consensus 278 ~l-------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~ 348 (656)
T PRK15174 278 QF-------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--K 348 (656)
T ss_pred hh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 54 56 5678888899999999999999999999998887777888888 999999 8999999999875 4
Q ss_pred CCc
Q 018924 328 GNE 330 (349)
Q Consensus 328 p~~ 330 (349)
|+.
T Consensus 349 P~~ 351 (656)
T PRK15174 349 GVT 351 (656)
T ss_pred ccc
Confidence 554
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.2e-17 Score=149.85 Aligned_cols=310 Identities=15% Similarity=0.015 Sum_probs=187.0
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH---------------
Q 018924 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM--------------- 73 (349)
Q Consensus 9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~--------------- 73 (349)
+.|+...|..+..+|.+.|++++|++.++..++.+.. +...|..+..++...|++++|+..+..
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 4567777777888888888888888888887775322 445666677777777777766543322
Q ss_pred --------------------------------------------------------------------------------
Q 018924 74 -------------------------------------------------------------------------------- 73 (349)
Q Consensus 74 -------------------------------------------------------------------------------- 73 (349)
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred -----hhcCCC-CCc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 018924 74 -----MEADPN-VAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY 146 (349)
Q Consensus 74 -----~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (349)
.. +.+ ..| ....|+.+...+...|++++|+..|++..+. .|+...+|..+...+...|++++|...|+..
T Consensus 315 ~~~~~al-~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 315 RAFEKAL-DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 100 011 2223444555555666677777777666653 3443346666666677777777777777633
Q ss_pred HhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh
Q 018924 147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226 (349)
Q Consensus 147 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 226 (349)
....+.+...|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++..+..+. +...
T Consensus 392 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~ 469 (615)
T TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDV 469 (615)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 33334445666667777777777777777777766643 334455556666677777777777777776664322 4556
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE-SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
|+.+...+...|++++|++.|++.+...+......++.. .++.....+...|++++|..++++.....+.+...+..+.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la 549 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 667777777777777777777777643110000011111 1111122233357777777777777666665555666677
Q ss_pred -hhhhcC--cchHHHHHHHHhC
Q 018924 306 -DNVQNG--KSNLETLRELYGN 324 (349)
Q Consensus 306 -~~~~~g--~~a~~~~~~m~~~ 324 (349)
.+.+.| ++|+..|++..+.
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 777777 7777777776543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=8.4e-19 Score=147.39 Aligned_cols=317 Identities=14% Similarity=0.104 Sum_probs=246.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH-HH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA-TV 90 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l 90 (349)
-..+|..+...+-..|++++|+.+++.+++...+ ....|..+..++...|+.+.|.+.|.+.. .+.|+..... .+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcchhhhhcch
Confidence 4678999999999999999999999999987433 56789999999999999999999998877 4446655543 45
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC-hhhHHHHHHHHhccCC
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDD 169 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 169 (349)
...+...|++++|...|.+..+. .|....+|+.|...+...|+...|++.|+... .+.|+ ...|-.+...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-kldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-KLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh-cCCCcchHHHhhHHHHHHHHhc
Confidence 55666688899999988888774 55665789999999999999999998888332 23333 4578888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249 (349)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 249 (349)
++.|...+....... +.....+..+...|...|.++.|...|++..+..+. -+..|+.|..++-..|+..+|.+.|++
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 898888888877642 233556777777888888888888888888875432 256788888888888888888888888
Q ss_pred HHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924 250 VLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS 325 (349)
Q Consensus 250 ~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~ 325 (349)
.+. +.|+ ....+.|...+...|++++|..+|....+..+.-...++.+. .|-++| ++|+..+++..+
T Consensus 346 aL~-------l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-- 416 (966)
T KOG4626|consen 346 ALR-------LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-- 416 (966)
T ss_pred HHH-------hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--
Confidence 884 3554 567788888888888888888888888877665566778888 888888 888888888765
Q ss_pred CCCCcccccCCCCChhHHHHH
Q 018924 326 LAGNEETLSGPEGDTSDLIEE 346 (349)
Q Consensus 326 ~~p~~~t~~~~l~~~~~~~~~ 346 (349)
++|+..--...+|+.+..+.+
T Consensus 417 I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred cCchHHHHHHhcchHHHHhhh
Confidence 678777666667766655443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=2.5e-16 Score=143.06 Aligned_cols=297 Identities=13% Similarity=-0.035 Sum_probs=233.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGY 94 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 94 (349)
.+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|+..++... +.+. .+..+|..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al-~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAAL-ELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHH
Confidence 4567788899999999999999999875 5788899999999999999999999999988 5443 4567888899999
Q ss_pred hhcCcHHHHHHHHHHHHHhhc----------------------------CCcchhhHHHHHHHH----------------
Q 018924 95 GKVGLLDKALAMLKKSEEQIK----------------------------GAKVNSAYNVILTLY---------------- 130 (349)
Q Consensus 95 ~~~g~~~~a~~~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~---------------- 130 (349)
...|++++|+..|........ .|.....+..+...+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999876654322100 011000111111100
Q ss_pred --------------------hhcCCHHHHHHHHH-HHHhh-ccC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 018924 131 --------------------GKYGKKDDVLRIWE-LYKKA-VKV-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187 (349)
Q Consensus 131 --------------------~~~~~~~~a~~~~~-~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (349)
...+++++|.+.|+ ....+ ..| ....+..+...+...|++++|...+++..+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 11257888999998 33322 223 34568888888999999999999999998853 33
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHH
Q 018924 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVES 266 (349)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~ 266 (349)
+...|..+...+...|++++|...|+...+..+. +...|..+...+...|++++|...|++.+. +.| +...
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-------l~P~~~~~ 435 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSID-------LDPDFIFS 435 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCccCHHH
Confidence 3557888889999999999999999999886543 577889999999999999999999999985 356 4677
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN 324 (349)
Q Consensus 267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~ 324 (349)
+..+...+.+.|++++|...++......+.+...|+.+. .+...| ++|+..|++..+.
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 778888899999999999999999988887888899999 999998 8999999998764
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=3.2e-17 Score=138.00 Aligned_cols=303 Identities=15% Similarity=0.141 Sum_probs=214.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-----------------------------------HHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY-----------------------------------TYCTRLS 56 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------------------------------~~~~ll~ 56 (349)
.+..|..+..++...|+.+.|.+.|.+.++.+ |+.. .|..|..
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~ 226 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGC 226 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcch
Confidence 46677777777888888888777777776642 3222 2333333
Q ss_pred HHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924 57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK 136 (349)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (349)
.+-..|+...|+..|++.. +.+. .-...|-.|...|...+.+++|...|.+... ..|+...++..+...|...|..
T Consensus 227 ~f~~~Gei~~aiq~y~eAv-kldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAV-KLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLL 302 (966)
T ss_pred HHhhcchHHHHHHHHHHhh-cCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccH
Confidence 3444555666666666555 2222 1234556667777777777777777766655 3455545666777777777777
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924 137 DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216 (349)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 216 (349)
+.|+..|+......+.-...|+.+..++-..|++.+|...+.+.+... +......+.|...|...|.+++|..+|....
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 777777773333333334678888888888888888888888887753 3345667778888888888888888888877
Q ss_pred HcCcccc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924 217 LKGREIH-VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 217 ~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 294 (349)
+-. |. ...++.|...|-++|++++|+..|++++ .+.|+ ...|+.+-..|-..|+.+.|.+.+.+....+
T Consensus 382 ~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-------rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 382 EVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-------RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred hhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-------hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 743 33 3467888888888899999999998888 77886 4678888888888999999999988888877
Q ss_pred CCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCccc
Q 018924 295 FIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEET 332 (349)
Q Consensus 295 ~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t 332 (349)
|.-...++.+. .|-..| .+|+.-+++..+ ++||..-
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 76677888888 888888 888988888876 5677643
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=2.6e-15 Score=145.12 Aligned_cols=301 Identities=11% Similarity=0.003 Sum_probs=162.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH------------HHHHHHHHhcCChHHHHHHHHHhhcCC
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD-RYTY------------CTRLSAYADASDHEGIDKILTMMEADP 78 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~ 78 (349)
+...+..+...+.+.|++++|+..|++..+...... ...| ......+.+.|++++|...|++.. ..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al-~~ 380 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR-QV 380 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh
Confidence 455556666666666666666666666555422111 1111 111233445566666666666655 32
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHH-------------------------------
Q 018924 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL------------------------------- 127 (349)
Q Consensus 79 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------------------------------- 127 (349)
.. .+...+..+...+...|++++|++.|++..+.. |+...++..+.
T Consensus 381 ~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 DN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22 334445556666666666666666666665532 22212222222
Q ss_pred -----------HHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 018924 128 -----------TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLI 196 (349)
Q Consensus 128 -----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 196 (349)
..+...|++++|++.|+......+.+...+..+...|.+.|++++|...++++.+.. +.+...+..+.
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~a 536 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYG 536 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 222334555555555553222223333444555555555566666666655555432 11222222222
Q ss_pred HHHHhcCcHHHHHHHHHHHHHc---------------------------------------CcccchhhHHHHHHHHhcC
Q 018924 197 DVYCRNGLLEKAENLVNHEKLK---------------------------------------GREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 197 ~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~li~~~~~~ 237 (349)
..+...++.++|...++.+... ..+.+...+..+...+.+.
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 2222333333333333221100 0112333445566667777
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cc
Q 018924 238 SQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KS 313 (349)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~ 313 (349)
|++++|++.|+++++. .| +...+..+...+...|+.++|.+.++.+....+.+...+..+. ++.+.| ++
T Consensus 617 g~~~~A~~~y~~al~~-------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 617 GDYAAARAAYQRVLTR-------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHH
Confidence 8888888888888753 44 5677778888888888888888888877776665666666667 777777 78
Q ss_pred hHHHHHHHHhC
Q 018924 314 NLETLRELYGN 324 (349)
Q Consensus 314 a~~~~~~m~~~ 324 (349)
|.++++++...
T Consensus 690 A~~~~~~al~~ 700 (1157)
T PRK11447 690 AQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhhh
Confidence 88888887654
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=1e-14 Score=141.16 Aligned_cols=297 Identities=11% Similarity=-0.005 Sum_probs=210.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH-----------
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA----------- 88 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 88 (349)
...+.+.|++++|...|++..+... .+...+..+..++...|++++|++.|++.. +... .+...+.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL-~~~p-~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQAL-RMDP-GNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHhcCH
Confidence 3456778888888888888887642 245567777888888888888888888876 3222 1222222
Q ss_pred -------------------------------HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH
Q 018924 89 -------------------------------TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137 (349)
Q Consensus 89 -------------------------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (349)
.+...+...|++++|++.|++..+. .|+...++..+...|...|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 2334455689999999999999874 4555468888999999999999
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc----------------------------------
Q 018924 138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ---------------------------------- 183 (349)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------------------- 183 (349)
+|...++......+.+...+..+...+...++.++|...++.+...
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999433333333333333333333444444444443322100
Q ss_pred -----CCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 018924 184 -----ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV 258 (349)
Q Consensus 184 -----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (349)
..+.+...+..+...+.+.|++++|...|++..+..+. +...+..++..|...|++++|++.++...+
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~------ 665 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPA------ 665 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------
Confidence 12445566778889999999999999999999987644 678889999999999999999999998874
Q ss_pred cCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc------hhHHHHh-hhhhcC--cchHHHHHHHH-hCCCC
Q 018924 259 KWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT------DLQDKLL-DNVQNG--KSNLETLRELY-GNSLA 327 (349)
Q Consensus 259 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~-~~~~~g--~~a~~~~~~m~-~~~~~ 327 (349)
..| +......+..++...|++++|.++++.+....+.+. ..+..+. .+...| ++|+..|++.. ..|+.
T Consensus 666 -~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 666 -TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred -cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 355 455667777888899999999999999987644222 3455556 777778 89999998874 34555
Q ss_pred CC
Q 018924 328 GN 329 (349)
Q Consensus 328 p~ 329 (349)
|+
T Consensus 745 ~~ 746 (1157)
T PRK11447 745 PT 746 (1157)
T ss_pred CC
Confidence 43
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=1.7e-14 Score=133.61 Aligned_cols=313 Identities=10% Similarity=0.012 Sum_probs=225.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
.+...+..+...+...|++++|..+|++..+.. +.+...+..+..++...|++++|...+++.. +... .+.. +..+
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l-~~~P-~~~~-~~~l 122 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLV-SGAP-DKAN-LLAL 122 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHH-HHHH
Confidence 355568899999999999999999999988763 3356677788888999999999999999987 4332 4445 8888
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH--------------------------
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-------------------------- 144 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------------------------- 144 (349)
..++...|+.++|+..++++.+. .|+...++..+..++...+..+.|+..++
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999885 44443566667777766666655443333
Q ss_pred --------------------HHHhh--ccCChh-hHH----HHHHHHhccCCHHHHHHHHHHHHhcCCC-CCcchHHHHH
Q 018924 145 --------------------LYKKA--VKVLNN-GYR----NVISSLLKLDDLESAEKIFEEWESQALC-YDTRIPNFLI 196 (349)
Q Consensus 145 --------------------~~~~~--~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 196 (349)
..... ..|+.. .+. ..+.++...|++++|...|+.+.+.+.+ |+. ....+.
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la 279 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVA 279 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHH
Confidence 11111 112211 111 1133456778999999999999886522 221 222357
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCccc---chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccc------ccCCCCH---
Q 018924 197 DVYCRNGLLEKAENLVNHEKLKGREI---HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL------VKWKPSV--- 264 (349)
Q Consensus 197 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~p~~--- 264 (349)
.+|...|++++|...|+++.+..... .......+..++...|++++|.++++.+....+.. ..-.|+.
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 78999999999999999987654221 12345667778899999999999999998641100 0112332
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCccc
Q 018924 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEET 332 (349)
Q Consensus 265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t 332 (349)
..+..+...+...|+.++|+++++++....|.+...+..+. .+...| ++|++.+++... +.|+...
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~ 428 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNIN 428 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChH
Confidence 34456677788999999999999999988888888888888 888888 899999998877 4587644
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=1.5e-17 Score=136.35 Aligned_cols=260 Identities=17% Similarity=0.101 Sum_probs=101.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENGITY-DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 96 (349)
.+...+.+.|++++|++++........+| |...|..+...+...++++.|...++++. ..+. -+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~-~~~~-~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL-ASDK-ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-cccccccccccc-cc
Confidence 45677888899999999886654443223 44455556666667888888888888887 5443 245556667666 68
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHH--HHhhccCChhhHHHHHHHHhccCCHHHHH
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWEL--YKKAVKVLNNGYRNVISSLLKLDDLESAE 174 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 174 (349)
.+++++|.+++++..+.. ++. ..+..++..+...++++++..+++. .....+++...|..+...+.+.|+.++|.
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~-~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDP-RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--ccc-chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888887765532 333 5677788888888888888888883 22233456677788888888888888999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 254 (349)
+.+++..+.. +.|....+.++..+...|+.+++..++....+.. +.|+..+..+..+|...|+.++|+.+|++....
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~- 243 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL- 243 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-
Confidence 8888888864 3356677788888888888888888888777654 346667788888888888889999988888753
Q ss_pred cccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 255 QTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 255 ~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
.| |......+..++...|+.++|.++.+++..
T Consensus 244 ------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 ------NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ------STT-HHHHHHHHHHHT-----------------
T ss_pred ------ccccccccccccccccccccccccccccccccc
Confidence 45 677778888888888888888888776543
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.9e-14 Score=116.48 Aligned_cols=240 Identities=15% Similarity=0.131 Sum_probs=193.3
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY 87 (349)
Q Consensus 8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 87 (349)
-.+.+..+|.++|.++++-...+.|.+++++......+.+..+||.+|.+-+-..+ .+++.+|. .....||..|+
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMi-sqkm~Pnl~Tf 276 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMI-SQKMTPNLFTF 276 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHH-HhhcCCchHhH
Confidence 34568899999999999999999999999999988888999999999987654333 67888898 77888999999
Q ss_pred HHHHHHHhhcCcHHH----HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH-HHHHHHHh-----hcc----CC
Q 018924 88 ATVGNGYGKVGLLDK----ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL-RIWELYKK-----AVK----VL 153 (349)
Q Consensus 88 ~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~-----~~~----~~ 153 (349)
|+++.+..+.|+++. |.+++.+|++-|+.|.. .+|..+|..+++.++..+.. .++.-... .++ .|
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsL-sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSL-SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcch-hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 999999999998875 45688899999999999 99999999999988886543 33331111 122 23
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhcC----CCCCc---chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh
Q 018924 154 NNGYRNVISSLLKLDDLESAEKIFEEWESQA----LCYDT---RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226 (349)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 226 (349)
...|...+..|.+..+.+.|.++..-+.... +.|+. .-|..+....|+....+.-..+|+.|.-.-.-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 4567788899999999999998887665321 23332 2356788888999999999999999987777788888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 227 WYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 227 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
...++.+....|+++-.-++|..++..
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 889999998999998888888888776
No 22
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=3.4e-14 Score=110.93 Aligned_cols=287 Identities=15% Similarity=0.177 Sum_probs=216.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHH--HHHHHHHHHhhcCcHHHH
Q 018924 26 TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWV--IYATVGNGYGKVGLLDKA 103 (349)
Q Consensus 26 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a 103 (349)
+.+.++|.++|-+|.+.... +..+--+|.+.|-+.|..|.|+.+.+.+..+++...+.. ..-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57899999999999985322 445677888899999999999999999885656543332 234678889999999999
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh----hhHHHHHHHHhccCCHHHHHHHHH
Q 018924 104 LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN----NGYRNVISSLLKLDDLESAEKIFE 178 (349)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~ 178 (349)
+.+|..+.+.+.... .+...|+..|-...+|++|+++-+ ....+..+.. ..|.-+...+....+.+.|..++.
T Consensus 127 E~~f~~L~de~efa~--~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEGEFAE--GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcchhhhH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999988654333 478899999999999999999988 4444333322 346677777778899999999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 018924 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV 258 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (349)
+..+.+ +..+..--.+.+.....|+++.|.+.++.+.+.++.--+.+...|..+|...|+.++...++..+.+.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~----- 278 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET----- 278 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----
Confidence 998864 33445555677889999999999999999999876656677889999999999999999999999865
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-----cchHHHHHHHHhC
Q 018924 259 KWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-----KSNLETLRELYGN 324 (349)
Q Consensus 259 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-----~~a~~~~~~m~~~ 324 (349)
.++...-..+-+.-....-.+.|...+.+-... .|+...+..++ .-.... ++.+.+++.|...
T Consensus 279 --~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 279 --NTGADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444444445545444555566666666554443 36777788888 333322 4667777887654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=7.8e-14 Score=129.32 Aligned_cols=307 Identities=11% Similarity=0.011 Sum_probs=221.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
.+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++. +... .+...+..+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al-~~~P-~~~~~~~~l 156 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQAL-PRAP-QTQQYPTEY 156 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHH
Confidence 356777888889999999999999999998863 33555 8888888899999999999999988 4333 344444556
Q ss_pred HHHHhhcCcHHHHHHHH----------------------------------------------HHHHHh-hcCCcchhhH
Q 018924 91 GNGYGKVGLLDKALAML----------------------------------------------KKSEEQ-IKGAKVNSAY 123 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~----------------------------------------------~~~~~~-~~~~~~~~~~ 123 (349)
..++...|..+.|++.+ +.+.+. ...|+....+
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 66666666655444433 333322 1112210111
Q ss_pred ----HHHHHHHhhcCCHHHHHHHHH-HHHhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---CcchHHH
Q 018924 124 ----NVILTLYGKYGKKDDVLRIWE-LYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY---DTRIPNF 194 (349)
Q Consensus 124 ----~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 194 (349)
...+..+...|++++|+..|+ +...+.+ |+. ....+..+|...|++++|...|+.+.+..... .......
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 111334567799999999999 4443321 222 22335778999999999999999987643111 1234556
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCc-----------ccc---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccC
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKLKGR-----------EIH---VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 260 (349)
+..++...|++++|..+++.+....+ .|+ ...+..+...+...|++++|+++++++...
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~------- 388 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN------- 388 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 77788999999999999999987532 122 224556777889999999999999999864
Q ss_pred CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcc
Q 018924 261 KP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEE 331 (349)
Q Consensus 261 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~ 331 (349)
.| +...+..+...+...|++++|++.++.+....|.+...+.... .+.+.| ++|..+++++.+. .|+..
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 45 5778888888999999999999999999998887777777777 777777 8999999999874 55554
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.8e-16 Score=129.88 Aligned_cols=258 Identities=17% Similarity=0.092 Sum_probs=114.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924 53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132 (349)
Q Consensus 53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (349)
.+...+.+.|++++|+++++........+.+...|..+.......++++.|.+.++++...+.. +. ..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~-~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NP-QDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-ccccccccc-cc
Confidence 5577888999999999999665413212244555566777888899999999999999886543 33 577778877 79
Q ss_pred cCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCcHHHHHH
Q 018924 133 YGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGLLEKAEN 210 (349)
Q Consensus 133 ~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 210 (349)
.+++++|.+++. .... .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999988 3222 2556667888889999999999999999977532 34567788889999999999999999
Q ss_pred HHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018924 211 LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 290 (349)
.+++..+..+. |....+.++..+...|+.+++.++++..... . ..|+..+..+..++...|+.++|...++..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-----~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA-----A-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-----C-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 99999996643 5778889999999999999999999998864 2 446667788999999999999999999999
Q ss_pred hhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924 291 NDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY 322 (349)
Q Consensus 291 ~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~ 322 (349)
....+.|+.....+. ++...| ++|.++.++..
T Consensus 241 ~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHSTT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 998888888888888 999999 89998887654
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=2.7e-13 Score=116.23 Aligned_cols=278 Identities=9% Similarity=0.002 Sum_probs=203.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH--HHHHHHHhhcCcHHH
Q 018924 26 TGNFEKLDSLMHEMEENGITYDRYT-YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY--ATVGNGYGKVGLLDK 102 (349)
Q Consensus 26 ~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~ 102 (349)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|...+.++. +.. |+...+ ......+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~-~~~--~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAA-ELA--DNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence 699999998888766542 22333 3333445578999999999999987 423 443322 244678899999999
Q ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh-------hhHHHHHHHHhccCCHHHHH
Q 018924 103 ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN-------NGYRNVISSLLKLDDLESAE 174 (349)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~ 174 (349)
|...++++.+. .|+.+.+...+...|.+.|++++|.+++. ....+..++. .+|..++.......+.+...
T Consensus 172 Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 172 ARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999885 45555788999999999999999999999 4443333222 13444455445555666777
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 254 (349)
++++.+.+. .+.+......+...+...|+.++|..++++..+.. ||... .++.+....++.+++.+..+...+.
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhh-
Confidence 777766443 35567778889999999999999999999888743 44432 2344555668999999999998864
Q ss_pred cccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 255 QTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 255 ~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
.| |...+..+...|.+.|++++|.+.|+...+.. |+...+..+. .+.+.| ++|.+++++-..
T Consensus 324 ------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 ------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56 45667788888999999999999999999874 5556667777 888888 889888887644
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=2.3e-13 Score=127.01 Aligned_cols=264 Identities=8% Similarity=-0.074 Sum_probs=186.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
+...|..+..++.. +++++|+..|.+.... .|+......+...+...|++++|...|+++. .. +|+...+..+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~-~~--~p~~~a~~~la 549 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS-LH--DMSNEDLLAAA 549 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh-cc--CCCcHHHHHHH
Confidence 56677777777766 7888888888777765 3555444444555567889999998888876 32 24444556677
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
..+.+.|+.++|...+++..+.. |+....+..+.......|++++|...++... ...|+...+..+..++.+.|+++
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL-~l~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL-NIAPSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHCCCHH
Confidence 78888899999999998887753 3332334444444555689999998888332 23356777888888888999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
+|...++...+.. +.+...++.+..++...|++++|...+++..+..+. +...+..+..++...|++++|+..|++++
T Consensus 627 eA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 627 AAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999998888864 445667777888888889999999999888886543 56778888888888999999999999888
Q ss_pred HHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 252 AAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 252 ~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
+. .|+. .+.........+..+++.+.+-+++....
T Consensus 705 ~l-------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 705 DD-------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred hc-------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 43 5643 33333344444555666666655555443
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=4.8e-13 Score=114.73 Aligned_cols=261 Identities=13% Similarity=0.103 Sum_probs=198.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC--TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG 93 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 93 (349)
|-.......+.|+++.|...|.++.+. .|+...+. .....+...|+++.|...++++. +... -+......+...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~-~~~P-~~~~al~ll~~~ 196 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLL-EVAP-RHPEVLRLAEQA 196 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHH
Confidence 333345558899999999999999875 45544333 33667888999999999999998 5443 456777889999
Q ss_pred HhhcCcHHHHHHHHHHHHHhhcCCcch------hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924 94 YGKVGLLDKALAMLKKSEEQIKGAKVN------SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL 167 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (349)
|.+.|++++|.+++..+.+....++.. .+|..++.......+.+...++++......+.++.....+...+...
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC 276 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC
Confidence 999999999999999999875543220 12333344444455566666666633233455777888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 247 (349)
|+.++|.+++++..+. +++... .++.+....++.+++.+..+...+..+. |+..+..+...|.+.+++++|.+.|
T Consensus 277 g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 277 DDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred CCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998874 444422 2344445669999999999999887653 6667888899999999999999999
Q ss_pred HHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 248 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
+.+. ...|+..++..+...+.+.|+.++|.+++++...
T Consensus 352 e~al-------~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 352 RAAL-------KQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHH-------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9998 4489999999999999999999999999987754
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=5.5e-13 Score=124.49 Aligned_cols=259 Identities=11% Similarity=-0.055 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (349)
+...|..+..++.. ++.++|...+.+.. ... |+......+...+...|++++|...|+++... .|.. ..+..+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al-~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~-~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAE-QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN-EDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHH-HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc-HHHHHH
Confidence 45677777777766 78888999777766 222 55444444555667899999999999987653 3444 567778
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 206 (349)
..++...|++++|...++......+.+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|+++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHH
Confidence 888899999999999998333333333334444444555669999999999999875 456778888999999999999
Q ss_pred HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHH
Q 018924 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAEN 285 (349)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 285 (349)
+|...|++.....+. +...++.+...+...|++++|++.++++++. .| +...+..+..++...|++++|..
T Consensus 627 eA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-------~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 627 AAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKG-------LPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999987644 5667888888999999999999999999854 56 56778888899999999999999
Q ss_pred HHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924 286 FIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY 322 (349)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~ 322 (349)
.+++.....+.+..+..... ...+.. +.|.+-+++--
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999888765555544444 444433 56666655543
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=3.7e-12 Score=116.75 Aligned_cols=308 Identities=13% Similarity=0.033 Sum_probs=214.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL 99 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 99 (349)
...+...|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++. . ..|+...+..++..+...++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-~--~dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELA-E--RDPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhc-c--cCcchHHHHHHHHHHHhcch
Confidence 55778889999999999999887543 56677778888899999999999999987 3 23555556555555555666
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-----------------------------------
Q 018924 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE----------------------------------- 144 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------- 144 (349)
..+|++.++++.+. .|+....+..+..++.+.|-...|.++.+
T Consensus 185 ~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 185 NYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 66699999999885 34443455666665555554433333322
Q ss_pred -------------HHHh---hccCChhh----HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc
Q 018924 145 -------------LYKK---AVKVLNNG----YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204 (349)
Q Consensus 145 -------------~~~~---~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 204 (349)
.... ..++.... ..-.+-++...|++.++.+.|+.+...+.+.-..+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 0011 11111111 123345667788899999999999887755445577788999999999
Q ss_pred HHHHHHHHHHHHHcCc-----ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--------ccccCCCCHHH-HHHH
Q 018924 205 LEKAENLVNHEKLKGR-----EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ--------TLVKWKPSVES-LAAC 270 (349)
Q Consensus 205 ~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~p~~~~-~~~l 270 (349)
+++|..+|+.+..... .++......|..+|...+++++|..+++++.+..+ ......||-.. +..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 9999999998866431 22344457888899999999999999999987422 01123344333 3445
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccC
Q 018924 271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSG 335 (349)
Q Consensus 271 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~ 335 (349)
+..+...|+..+|++.++.+....|.+......+. .+...| .+|.+.++.... +.|+......
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~ 488 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILER 488 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHH
Confidence 66678899999999999999888888888888888 888888 888888876654 3677655433
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=6.2e-14 Score=119.41 Aligned_cols=287 Identities=13% Similarity=0.028 Sum_probs=216.2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-ccHHHHHHHHHHHhhcCcHHHHHH
Q 018924 27 GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LDWVIYATVGNGYGKVGLLDKALA 105 (349)
Q Consensus 27 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~ 105 (349)
=+..+|+..|.....+ +.-+......+..+|...+++++|.++|+.+.+..... -+..+|.+.+.-+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3567899999996654 33344577788899999999999999999987322221 4567777766544321 2222
Q ss_pred HH-HHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924 106 ML-KKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184 (349)
Q Consensus 106 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 184 (349)
.+ +.+.+. .|+.+.+|.++.++|.-.++.+.|++.|+....-.+....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 333332 455558999999999999999999999994434334467888888888889999999999999886532
Q ss_pred CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-C
Q 018924 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-S 263 (349)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~ 263 (349)
+.+-..|..|.-.|.+.++++.|+-.|++..+-++. +.+....+...+.+.|+.++|+++++++.. +.| |
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-------ld~kn 556 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH-------LDPKN 556 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh-------cCCCC
Confidence 223334556788899999999999999999997665 666777788889999999999999999984 344 4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCC
Q 018924 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGN 329 (349)
Q Consensus 264 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~ 329 (349)
+..--.-...+...++.++|...++++++.-|.+...|..+. .|.+.| +.|+.-|--+.+..-++.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 444444455677889999999999999998777777888888 999988 788888888776543333
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1.2e-12 Score=112.82 Aligned_cols=295 Identities=9% Similarity=-0.011 Sum_probs=205.1
Q ss_pred HHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 15 VYNSMLKLY--YKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 15 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
.+..+.++. ...|+++.|.+.+.+..+. .|++. .+-....+..+.|+.+.|.+.+.+.. +....+......+..
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~-~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAA-ELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCcCchHHHHHHH
Confidence 334444444 3579999999999887775 34443 44455677888899999999999986 333223333444568
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHH-HHHHHH---hc
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYR-NVISSL---LK 166 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~-~li~~~---~~ 166 (349)
..+...|+++.|...++.+.+.. |+.+.++..+...+...|++++|.+.+. ....+.. +...+. .-..++ ..
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999864 5554688999999999999999999999 4444333 332221 111222 22
Q ss_pred cCCHHHHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh-HHHHHHHHhcCCCHHH
Q 018924 167 LDDLESAEKIFEEWESQAL---CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS-WYYLATGYRQNSQIHK 242 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~ 242 (349)
.+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 2333333345555444321 23778888899999999999999999999998654322111 1222223344678889
Q ss_pred HHHHHHHHHHHhcccccCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCCchhHHHHh-hhhhcC--cchH
Q 018924 243 AVEAMKKVLAAYQTLVKWKPSV---ESLAACLDYFKDEGDIGGAENFIELLNDKG-FIPTDLQDKLL-DNVQNG--KSNL 315 (349)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~-~~~~~g--~~a~ 315 (349)
+.+.++...+. .|+. ....++...+.+.|++++|.+.|+...... .|+...+..+. .+.+.| ++|.
T Consensus 318 ~~~~~e~~lk~-------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 318 LEKLIEKQAKN-------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred HHHHHHHHHHh-------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999888854 5543 556688888999999999999999543332 36666677888 888888 8999
Q ss_pred HHHHHHH
Q 018924 316 ETLRELY 322 (349)
Q Consensus 316 ~~~~~m~ 322 (349)
+++++-.
T Consensus 391 ~~~~~~l 397 (409)
T TIGR00540 391 AMRQDSL 397 (409)
T ss_pred HHHHHHH
Confidence 9998753
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2e-12 Score=111.54 Aligned_cols=272 Identities=14% Similarity=0.022 Sum_probs=194.3
Q ss_pred CccH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH
Q 018924 10 ARTT-VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA 88 (349)
Q Consensus 10 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 88 (349)
.|+. ..+-....+..+.|+++.|.+.+.+..+....++..........+...|+++.|...++.+. +..+ -+..++.
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~-~~~P-~~~~~l~ 191 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLL-EMAP-RHKEVLK 191 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHH
Confidence 4543 33445567788899999999999998775322222344445778889999999999999998 5443 4567788
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH---hhcCCHHHHHHHHHHHHhhc----cCChhhHHHHH
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY---GKYGKKDDVLRIWELYKKAV----KVLNNGYRNVI 161 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li 161 (349)
.+...+...|++++|.+.+..+.+.+..++. .....-..++ ...+..+.+.+.+....... +.+...+..+.
T Consensus 192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a 270 (409)
T TIGR00540 192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALA 270 (409)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHH
Confidence 9999999999999999999999987654333 2211111221 33333333333444111222 24777888999
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch--hhHHHHHHHHhc
Q 018924 162 SSLLKLDDLESAEKIFEEWESQALCYDTRI---PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV--KSWYYLATGYRQ 236 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~ 236 (349)
..+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+..+. |+ ....++...+.+
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMK 347 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHH
Confidence 99999999999999999999864 33321 112222233457888899999888875432 44 556788999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 348 ~~~~~~A~~~le~a~a~-----~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 348 HGEFIEAADAFKNVAAC-----KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cccHHHHHHHHHHhHHh-----hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999964443 6689999999999999999999999999997644
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4e-12 Score=103.31 Aligned_cols=313 Identities=13% Similarity=0.093 Sum_probs=221.9
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHhhcCCCCCcc
Q 018924 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG----IDKILTMMEADPNVALD 83 (349)
Q Consensus 8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~ 83 (349)
..+.+..+||.+|.+-.- ..-.+++.+|.....+||..|+|+++++.++.|+++. |.+++.+|+ +.|+.|+
T Consensus 237 k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePs 311 (625)
T KOG4422|consen 237 KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPS 311 (625)
T ss_pred hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcc
Confidence 356688999999986543 2337899999999999999999999999999998876 457788899 8999999
Q ss_pred HHHHHHHHHHHhhcCcHHH-HHHHHHHHHHh-------hcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh-----c
Q 018924 84 WVIYATVGNGYGKVGLLDK-ALAMLKKSEEQ-------IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA-----V 150 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 150 (349)
..+|..+|..+++.++..+ |..++.++... ...|+...-|...+..|.+..+.+-|.++......| +
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 9999999999999888754 55555655442 123333246778888888999999998887743333 2
Q ss_pred cCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhH
Q 018924 151 KVLN---NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW 227 (349)
Q Consensus 151 ~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 227 (349)
+|+. .-|..+....|.....+.-...|+.|.-+-+-|+..+...++++..-.|+++-.-+++..+...|...+...-
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 3443 2356777788888999999999999988777888899999999999999999999999999987755555555
Q ss_pred HHHHHHHhcCC-CH--------HH-----HHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 228 YYLATGYRQNS-QI--------HK-----AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 228 ~~li~~~~~~~-~~--------~~-----a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
..++..+++.. +. .. |..+++.......+...........+.+.-.+.+.|..++|.++|..+.+.
T Consensus 472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 55555555544 11 11 111111110000000122334455667777788999999999999998654
Q ss_pred C--CCCchhHHHHh-----hhhhcC-cchHHHHHHHHhCC
Q 018924 294 G--FIPTDLQDKLL-----DNVQNG-KSNLETLRELYGNS 325 (349)
Q Consensus 294 ~--~~~~~~~~~l~-----~~~~~g-~~a~~~~~~m~~~~ 325 (349)
+ .|-....++++ +..+.. ..|..+++-|...+
T Consensus 552 ~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 552 HNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2 25445556444 333333 78888888886554
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=5.3e-12 Score=115.72 Aligned_cols=309 Identities=9% Similarity=0.008 Sum_probs=180.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV 97 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 97 (349)
.++..+...|+.++|+..+++..... .........+...+...|++++|+++|+++. +... -+...+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL-~~dP-~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSL-KKDP-TNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCC-CCHHHHHHHHHHHhhc
Confidence 55555555566666666665555110 1111122222345555566666666666665 3232 2234444555666666
Q ss_pred CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHH
Q 018924 98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177 (349)
Q Consensus 98 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 177 (349)
++.++|++.++++... .|+. ..+..++..+...++..+|++.++......+.+...+..+..++.+.|-...|.++.
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~-~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTV-QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--Ccch-HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 6666666666666543 2333 333333333333444444666666322333333444444444444444333332222
Q ss_pred H------------------------------------------------HHHhc-CCCCCc-chH----HHHHHHHHhcC
Q 018924 178 E------------------------------------------------EWESQ-ALCYDT-RIP----NFLIDVYCRNG 203 (349)
Q Consensus 178 ~------------------------------------------------~~~~~-~~~~~~-~~~----~~l~~~~~~~~ 203 (349)
. .+... +-.|.. ..| --.+-++...|
T Consensus 227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 1 11110 001211 111 12344667789
Q ss_pred cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH
Q 018924 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283 (349)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 283 (349)
+..++.+.|+.+...+.+....+-..+..+|...+++++|..+|+.+...........++......|..++...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 99999999999998876544557788999999999999999999999876222224688888888999999999999999
Q ss_pred HHHHHHHhhCCC------------C--CchhHHH-Hh-hhhhcC--cchHHHHHHHHhCCCCCCccccc
Q 018924 284 ENFIELLNDKGF------------I--PTDLQDK-LL-DNVQNG--KSNLETLRELYGNSLAGNEETLS 334 (349)
Q Consensus 284 ~~~~~~~~~~~~------------~--~~~~~~~-l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~ 334 (349)
..+++.+.+..| | +-..+.. ++ .+...| .+|.+.++++... .|...-+.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~ 453 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLR 453 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 999999988422 2 2223333 34 677777 8999999999764 56655443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=9.2e-13 Score=107.80 Aligned_cols=284 Identities=15% Similarity=0.064 Sum_probs=211.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924 22 LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD--ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL 99 (349)
Q Consensus 22 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 99 (349)
.+.++|+++.|++++.-..+.+-+.-...-+.|-..+.. -.++..|.+.-+... ..+- .+......-.+.-...|+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al-n~dr-yn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL-NIDR-YNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh-cccc-cCHHHhhcCCceeeecCc
Confidence 577899999999999888776433333333333322222 345777777766665 3222 333443334445556899
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 018924 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 179 (349)
+++|.+.|++......... .+...+.-.+-..|+.++|+..|-....-+..+..+...+.+.|-...+..+|.+++.+
T Consensus 506 ~dka~~~ykeal~ndasc~--ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCT--EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHH--HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999999876422222 23334455677889999999998844444456667788888999999999999999987
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccccc
Q 018924 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK 259 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 259 (349)
.... ++.|+.+.+.|...|-+.|+-..|++.+-.--.. ++-+..+...|..-|....-+++++.+|+++. -
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa-------l 654 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-------L 654 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-------h
Confidence 7664 5778889999999999999999999876543332 44577888889999999999999999999987 7
Q ss_pred CCCCHHHHHHHHHHH-HhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHHH
Q 018924 260 WKPSVESLAACLDYF-KDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLETL 318 (349)
Q Consensus 260 ~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~~ 318 (349)
++|+..-|..++..| .+.|++++|.++++.+.++.|.+..+...++ .....| .++.+.-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~ 716 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYA 716 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHH
Confidence 799999999988766 5689999999999999999899999988888 877777 5554443
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=2.8e-11 Score=97.53 Aligned_cols=296 Identities=13% Similarity=0.046 Sum_probs=227.3
Q ss_pred HHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924 19 MLKLYYK--TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96 (349)
Q Consensus 19 li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 96 (349)
+..+..+ .|+|.+|.++..+-.+++-.| ...|..-..+.-+.|+.+.+-.++.+.. +..-.++...+-+.......
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHh
Confidence 4444433 699999999999988876553 4456666777788999999999999998 55445788888889999999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh-------hhHHHHHHHHhccC
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN-------NGYRNVISSLLKLD 168 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~-------~~~~~li~~~~~~~ 168 (349)
.|+.+.|..-++++.+.++.++ .+......+|.+.|++.....++. +.+.+.-.|. .+|..+++-....+
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~--~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHP--EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCCh--HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999988654443 589999999999999999999999 7666665444 35777777776666
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248 (349)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 248 (349)
..+.-...++...+. ...++..-.+++.-+.++|+.++|.++..+..+++..|+ -.....+.+-++.+.-++..+
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHH
Confidence 666655566655443 355666777888899999999999999999998877665 223344667788887777777
Q ss_pred HHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924 249 KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS 325 (349)
Q Consensus 249 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~ 325 (349)
+..+. .+. ++..+..|-..|.+.+.+.+|...|+...+. .|+..+|+.+. ++.+.| .+|.++.++-...-
T Consensus 319 ~~l~~----h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 319 KWLKQ----HPE--DPLLLSTLGRLALKNKLWGKASEALEAALKL-RPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHh----CCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 77754 122 4477888888999999999999999966654 36778888888 999999 78888888776544
Q ss_pred CCCCc
Q 018924 326 LAGNE 330 (349)
Q Consensus 326 ~~p~~ 330 (349)
.+|+.
T Consensus 392 ~~~~~ 396 (400)
T COG3071 392 RQPNL 396 (400)
T ss_pred cCCCC
Confidence 45544
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.60 E-value=2.6e-12 Score=102.54 Aligned_cols=200 Identities=15% Similarity=0.102 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (349)
....+..+...+...|++++|...+++.. +... .+...+..+...+...|++++|.+.+++..+.. |+....+..+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKAL-EHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence 34556666677777777777777777765 3222 345566667777777777777777777776643 2222466667
Q ss_pred HHHHhhcCCHHHHHHHHH-HHHhh-ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc
Q 018924 127 LTLYGKYGKKDDVLRIWE-LYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~-~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 204 (349)
...+...|++++|.+.++ ..... .+.....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 777777777777777777 22211 12223455566667777777777777777776643 2334556667777777777
Q ss_pred HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
+++|...+++..+.. ..+...+..+...+...|+.++|..+.+.+..
T Consensus 185 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777777776652 23455555666667777777777777666543
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=5.9e-13 Score=113.58 Aligned_cols=268 Identities=14% Similarity=0.063 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHH-HHhhcCCCCCccHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGI--TYDRYTYCTRLSAYADASDHEGIDKIL-TMMEADPNVALDWVIYAT 89 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 89 (349)
......+..+|.+.+++++|..+|+.+.+... --+..+|.+.+=-+-+ .+ ++..+ +.+. +.+. -.+.+|.+
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~v--~Ls~Laq~Li-~~~~-~sPesWca 426 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--EV--ALSYLAQDLI-DTDP-NSPESWCA 426 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--hH--HHHHHHHHHH-hhCC-CCcHHHHH
Confidence 35567788999999999999999999987521 1155677777643211 11 22222 2233 2222 56789999
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD 169 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (349)
+.++|.-.++.+.|++.|++..+ +.|....+|+.+..-+.....+|.|...|+....-.+.+-..|.-+...|.+.++
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch
Confidence 99999999999999999999998 5675558999999999999999999999993222222223455567888999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249 (349)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 249 (349)
++.|+-.|+++.+.+ +.+.+....+...+-+.|+.++|+.++++....+.+ |+..--..+..+...+++++|+..+++
T Consensus 505 ~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 999999999999865 445666777888899999999999999999987665 454444566677788999999999999
Q ss_pred HHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924 250 VLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 250 ~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 297 (349)
.++ +.|+ ...|..+...|.+.|+.+.|..-|.-+.+.+|+.
T Consensus 583 Lk~-------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 583 LKE-------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHH-------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 984 4775 5667788889999999999999999888876643
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.7e-12 Score=103.73 Aligned_cols=220 Identities=15% Similarity=0.107 Sum_probs=145.9
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHh
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL 165 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (349)
|...+.+.|+-.++.++|...|++..+.+ |....+|+.+.+-|....+...|++-++....-.|.|-..|-.+.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 33445566677777788888888877743 3333578888888888888888888888555666667777888888888
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHH
Q 018924 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245 (349)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 245 (349)
-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|.+.|.+....|-. +...+..|...|-+.++..+|..
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH
Confidence 8888888888888877753 556777888888888888888888888887775533 44677778888888888888888
Q ss_pred HHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHhhhhhcC-cchHHHHHHHHh
Q 018924 246 AMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNG-KSNLETLRELYG 323 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~a~~~~~~m~~ 323 (349)
.|.+-++.......+.| ......-|..-+.+.+++++|......... . ... ++|..+++++++
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--------------~-~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK--------------G-ETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc--------------C-CchHHHHHHHHHHHHH
Confidence 87777664111111223 112222233445566666666543332222 1 111 677777777765
Q ss_pred C
Q 018924 324 N 324 (349)
Q Consensus 324 ~ 324 (349)
.
T Consensus 553 ~ 553 (559)
T KOG1155|consen 553 I 553 (559)
T ss_pred h
Confidence 4
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.9e-11 Score=99.23 Aligned_cols=300 Identities=10% Similarity=-0.015 Sum_probs=213.3
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-----------------------------HHHHHH
Q 018924 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT-----------------------------RLSAYA 59 (349)
Q Consensus 9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-----------------------------ll~~~~ 59 (349)
...|...+-.-...+.+.|..+.|.+.|......- +-.-..|.. +..++-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 33444444444445667788888888877765531 111111111 122333
Q ss_pred hcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC-cchhhHHHHHHHHhhcCC-HH
Q 018924 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA-KVNSAYNVILTLYGKYGK-KD 137 (349)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~-~~ 137 (349)
...+.+++..-.+.+. ..|++.+...-+....+.-...++|+|+.+|+++.+..+.. +.-.+|+.++-.-..... .-
T Consensus 239 el~q~~e~~~k~e~l~-~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLS-SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHH-hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 4445666666666666 66775555555556666777889999999999998764321 121455555433222111 11
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
-|..+++ .. +--+.|+..+.+.|+-.++.++|...|+..++.+ +.....|+.+..-|....+...|..-+++..+
T Consensus 318 LA~~v~~--id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 318 LAQNVSN--ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHH--hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 2222222 22 2334678888899999999999999999999875 44566799999999999999999999999999
Q ss_pred cCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018924 218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296 (349)
Q Consensus 218 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 296 (349)
-++. |...|-.|.++|.-.+.+.-|+-+|+++. .++| |+..|..|.++|.+.++.++|...|.+....+-.
T Consensus 393 i~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-------~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 393 INPR-DYRAWYGLGQAYEIMKMHFYALYYFQKAL-------ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred cCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHH-------hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 7664 88899999999999999999999999998 5577 7899999999999999999999999999888777
Q ss_pred CchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 297 PTDLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 297 ~~~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
+...+..+. .|-+.+ .+|...|++..+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 778888888 888877 778777766554
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=8.2e-12 Score=111.80 Aligned_cols=267 Identities=10% Similarity=-0.082 Sum_probs=171.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh---------hcCcHHHHHHHHHHH
Q 018924 45 TYDRYTYCTRLSAYAD-----ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG---------KVGLLDKALAMLKKS 110 (349)
Q Consensus 45 ~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~~ 110 (349)
..+...|...+.+-.. .+++++|...|++.. +.+. -+...|..+..++. ..+++++|...+++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-NMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3455656555555322 234678888888887 4333 23445555555443 234578899999888
Q ss_pred HHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcc
Q 018924 111 EEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190 (349)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (349)
.+. .|+...++..+...+...|++++|...|+......+.+...+..+...+...|++++|...+++..+.... +..
T Consensus 331 l~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 331 TEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred Hhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 874 55555788888888888899999999998544445555667888888888999999999999988875422 222
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH-HH
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL-AA 269 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~-~~ 269 (349)
.+..++..+...|++++|...+++......+-++..+..+..++...|++++|.+.+.++.. ..|+..+. +.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-------~~~~~~~~~~~ 480 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-------QEITGLIAVNL 480 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-------ccchhHHHHHH
Confidence 33344555667888999999988887653222444567777788889999999999888764 25554433 44
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHHHHHHHhCC
Q 018924 270 CLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLETLRELYGNS 325 (349)
Q Consensus 270 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~~~~m~~~~ 325 (349)
+...|...| +.|...++.+.+............- .+.-.| .+...+++++.+.|
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 536 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNED 536 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHHhhccc
Confidence 444556666 4777777766654221111111122 455555 44455557776653
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=7.3e-12 Score=99.94 Aligned_cols=203 Identities=19% Similarity=0.129 Sum_probs=161.8
Q ss_pred ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHH
Q 018924 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVI 161 (349)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 161 (349)
.....+..+...+...|++++|.+.+++..+. .|+....+..+...+...|++++|.+.++......+.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 44667788899999999999999999998875 3444468888999999999999999999944444455566788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCH
Q 018924 162 SSLLKLDDLESAEKIFEEWESQAL-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 240 (349)
..+...|++++|.+.++...+... ......+..+...+...|++++|...+++....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 899999999999999999886432 223446677888889999999999999998876533 456788888899999999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
++|.+.+++..+. ...+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998863 1335666667778888899999999988877654
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.1e-11 Score=111.02 Aligned_cols=150 Identities=9% Similarity=-0.088 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHH
Q 018924 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW 143 (349)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (349)
+++|...+++.. +.+. -+..++..+...+...|++++|...|++..+. .|+...++..+...+...|++++|+..+
T Consensus 320 ~~~A~~~~~~Al-~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 320 MIKAKEHAIKAT-ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445555555554 3222 23444444555555555555555555555543 2333234555555555555555555555
Q ss_pred HHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 144 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
+....-.+.+...+..++..+...|++++|...++++.+...+.+...+..+..++...|++++|...+.++..
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 52222112122222222333344455555555555544432111222344444455555555555555555443
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=6e-11 Score=95.69 Aligned_cols=267 Identities=15% Similarity=0.054 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
...|-.-..+.-+.|+.+.+-..+.+..+.--.++...+-+........|+.+.|..-++++. +.+. -+.........
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll-~~~p-r~~~vlrLa~r 195 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLL-EMTP-RHPEVLRLALR 195 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHH-HhCc-CChHHHHHHHH
Confidence 455667778888999999999999999886445566677778888899999999999999988 5454 45667788999
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcch------hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVN------SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK 166 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (349)
+|.+.|++.....++..+.+.+.-.+.. .+|..+++-....+..+.-...|+......+.++..-.+++.-+.+
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 9999999999999999999987755541 3677777777777777776777875555566666777788899999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 246 (349)
.|+.++|.++..+..+++..|+. ...-.+.+-++.+.-.+..+.-.+..+ -++..+.+|...|.+++.|.+|.+.
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred cCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999998776662 122244566777777777766555433 2557888999999999999999999
Q ss_pred HHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
|+..+ ...|+..+|+.+.+++.+.|+..+|.++.++....
T Consensus 351 leaAl-------~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 351 LEAAL-------KLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHH-------hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99888 56999999999999999999999999999877643
No 45
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=1.7e-14 Score=84.18 Aligned_cols=50 Identities=34% Similarity=0.598 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 60 (349)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 88999999999999999999999999999999999999999999998874
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.2e-11 Score=102.26 Aligned_cols=280 Identities=13% Similarity=0.059 Sum_probs=226.0
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY 87 (349)
Q Consensus 8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 87 (349)
|...++.....-.+-+...+++.+..++++...+.. +++...+..-|.++...|+..+-.-+=.++. + ..+....+|
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV-~-~yP~~a~sW 315 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLV-D-LYPSKALSW 315 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHH-H-hCCCCCcch
Confidence 455567777777888899999999999999998863 5566677777778889999888777777776 4 333567888
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL 167 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (349)
-++.-.|.-.|+..+|.+.|.+... +.|.-..+|-.....|...|..+.|...+....+-.+-...-+--+..-|.+.
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence 8899999999999999999998875 45555569999999999999999999998844444444444455667778999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc--Ccc----cchhhHHHHHHHHhcCCCHH
Q 018924 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK--GRE----IHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~li~~~~~~~~~~ 241 (349)
++.+.|.++|.+..... +.|+.+.+-+.-.....+.+.+|..+|+..... .+. ....+++.|..+|.+.+.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999988763 667888888888888899999999999877621 111 13456889999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299 (349)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (349)
+|+..+++.+. -.+-+..++.++.-.|...|+++.|.+.|++.....+.+..
T Consensus 473 eAI~~~q~aL~------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 473 EAIDYYQKALL------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHH------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 99999999995 33448899999999999999999999999999887665533
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.55 E-value=7.9e-12 Score=111.04 Aligned_cols=316 Identities=15% Similarity=0.079 Sum_probs=230.3
Q ss_pred hhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHH
Q 018924 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN---GITYDR------YTYCTRLSAYADASDHEGIDKILT 72 (349)
Q Consensus 2 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~ 72 (349)
+.|...|-++.+...|.+...+...|++.+|...|...... ...+|. .+--.+..+.-..++++.|.+.|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 34566666688888999999999999999999999888765 122333 222335556667788999999999
Q ss_pred HhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHH--Hhhc
Q 018924 73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY--KKAV 150 (349)
Q Consensus 73 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~ 150 (349)
.+. +..+ .=...|--+.......+...+|...++...+.. ..++ .+++.+...+.....+..|.+-|++. ....
T Consensus 521 ~Il-kehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np-~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 521 SIL-KEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP-NARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHH-HHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc-HHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 887 3222 223334444433444577888999998887742 3444 68888999999999999999877732 2223
Q ss_pred cCChhhHHHHHHHHhc------------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 151 KVLNNGYRNVISSLLK------------LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 151 ~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
.+|..+.-.|.+.|.. .+..++|+++|.+.++.. +.|...-|.+.-.++..|++..|..+|....+.
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 3666666666665542 245788999999988875 667888888999999999999999999999986
Q ss_pred CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924 219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 219 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 298 (349)
... +..+|-.+.++|...|++..|++.|+...+. ..-.-+......|.+++.+.|++.+|.+.+.......|.++
T Consensus 676 ~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk----f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 676 TSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKK----FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred Hhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHH----hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 542 5678889999999999999999999999876 23344778889999999999999999999988888777444
Q ss_pred h-hHHHHhhhhh--------------------cC-cchHHHHHHHHhCCCC
Q 018924 299 D-LQDKLLDNVQ--------------------NG-KSNLETLRELYGNSLA 327 (349)
Q Consensus 299 ~-~~~~l~~~~~--------------------~g-~~a~~~~~~m~~~~~~ 327 (349)
. .||..+...+ .+ +.|.++|.+|...+-.
T Consensus 751 ~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 751 SVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred hHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3 3444331111 11 5677888888766533
No 48
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=4.3e-11 Score=105.73 Aligned_cols=300 Identities=15% Similarity=0.098 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
+...-.....+.-.|++++|.+++.+.++.... +...|..|..+|-..|+.+++...+-..- ..+. .|..-|..+..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p-~d~e~W~~lad 215 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNP-KDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCC-CChHHHHHHHH
Confidence 333333444444458888888888887776433 56677777777777777777776654443 2222 44566666666
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChh-----hHHHHHHHHhcc
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----GYRNVISSLLKL 167 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~~~ 167 (349)
...+.|++++|.-.|.+.++.. |+.-..+---+..|-+.|+...|...|.....-.+|... +-..++..+...
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 6666677777776666666542 222123333445555566666665555522222222211 122233344444
Q ss_pred CCHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCcHHHHHHH-----------------------------------
Q 018924 168 DDLESAEKIFEEWESQ-ALCYDTRIPNFLIDVYCRNGLLEKAENL----------------------------------- 211 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~----------------------------------- 211 (349)
++-+.|.+.++..... +-..+...++.++..|.+...++.|...
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 4445555444444331 1122233344444444444444443333
Q ss_pred --------------------------HHHHHHcC--cccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC
Q 018924 212 --------------------------VNHEKLKG--REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS 263 (349)
Q Consensus 212 --------------------------~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~ 263 (349)
...+.+.+ +.-+...|.-+..+|...|++.+|+.+|..+... ...-+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~ 448 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQN 448 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccc
Confidence 33333333 2223445677778888888999999999888865 33345
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924 264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY 322 (349)
Q Consensus 264 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~ 322 (349)
...|..+..+|...|..++|.+.+.......|.+...-..|. .+.+.| ++|.+.+..|.
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 778888888888899999999999888888777766667777 777888 88888888774
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.8e-11 Score=99.19 Aligned_cols=197 Identities=15% Similarity=0.046 Sum_probs=145.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202 (349)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 202 (349)
|--+..+|....+.++..+.|.+...-.+.++.+|..-.+...-.+++++|..-|++..... +-++..|--+..+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 55555666666777777777776555556666677777777777777888888777777643 33455566666667788
Q ss_pred CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH--HHHHHHHHhcCCh
Q 018924 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL--AACLDYFKDEGDI 280 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~ 280 (349)
++++++...|++.+++ ++.-+..|+.....+..+++++.|.+.|+..++..+...++..+..++ -.++..-.+ +++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhH
Confidence 8999999999998876 334677899999999999999999999999997644333333333332 233333244 899
Q ss_pred hhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924 281 GGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY 322 (349)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~ 322 (349)
..|..+++...+.+|.....|..|. .-++.| ++|+++|++-.
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999998888999999 888888 99999998753
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=6e-11 Score=93.10 Aligned_cols=272 Identities=14% Similarity=0.101 Sum_probs=203.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYD--RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY 87 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 87 (349)
-+..+.-+|.+.|-+.|..+.|+.+...+.++ +.+-+ ......|..-|...|-+|.|+.+|..+. +.+. .-....
T Consensus 67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~-de~e-fa~~Al 144 (389)
T COG2956 67 ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLV-DEGE-FAEGAL 144 (389)
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-cchh-hhHHHH
Confidence 35666678889999999999999999998875 11111 1244556777888999999999999998 5333 445566
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..|+..|-...+|++|+++-+++...+..+.. ...|.-|...+....+.+.|...+.......+-....--.+.+..
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 78999999999999999999999876554433 124556666667788999999999854444444455555677888
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 244 (349)
...|++..|.+.++.+.+.+...-..+...|..+|...|+.++....+.++.+....++. -..+...-....-.+.|.
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq 302 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQ 302 (389)
T ss_pred HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHH
Confidence 999999999999999999876666677889999999999999999999999886543333 344444444455667788
Q ss_pred HHHHHHHHHhcccccCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHhhC
Q 018924 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKD---EGDIGGAENFIELLNDK 293 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~ 293 (349)
.++.+-+.. +|+...+..++..-.. .|...+....++.|...
T Consensus 303 ~~l~~Ql~r-------~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 303 AYLTRQLRR-------KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHhh-------CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 777777744 8999999999987533 34455566667777654
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=4.2e-12 Score=99.66 Aligned_cols=232 Identities=11% Similarity=0.040 Sum_probs=198.1
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK 166 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (349)
-+.+..+|.+.|.+.+|++.|+..... .|-. .+|..|-..|.+..++..|+.++.......+.|.....-+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~-dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHP-DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCch-hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 378999999999999999999988875 3444 6799999999999999999999996666666666666677888889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 246 (349)
.++.++|.++++...+.. +.++....++...|.-.++++.|...|+++.+.|+. ++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998864 556667777777888899999999999999999987 888999999999999999999999
Q ss_pred HHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHH
Q 018924 247 MKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLREL 321 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m 321 (349)
|.++... .-.|+ ...|-.+-......||+..|.+.|+.....+......++.+. .-.+.| ++|..++...
T Consensus 381 f~RAlst-----at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 381 FQRALST-----ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHhh-----ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999876 55554 467888888888999999999999999999888889999999 888888 8999999887
Q ss_pred HhCCCCCCc
Q 018924 322 YGNSLAGNE 330 (349)
Q Consensus 322 ~~~~~~p~~ 330 (349)
... .|+-
T Consensus 456 ~s~--~P~m 462 (478)
T KOG1129|consen 456 KSV--MPDM 462 (478)
T ss_pred hhh--Cccc
Confidence 653 4544
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=1.4e-10 Score=99.18 Aligned_cols=295 Identities=13% Similarity=0.061 Sum_probs=182.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
....|-.....+-..|++..|..++....+.... +...|-..+..-....+++.|..+|.+.. ...|+..+|.--+
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~ 658 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSA 658 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHh
Confidence 3344444445555556666666666666554322 44566666666666666666666666655 2345555555555
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
+.---.++.++|.+++++..+. .|+-...|-.+...+-+.++.+.|...|..-...++-.+..|-.+...--+.|++-
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence 5555556666666666666553 34443456666666666666666666665333334444445555555555566666
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
.|..+++..+..+ +-+...|-..|++-.+.|..+.|..+..+..+. ++.+-..|..-|....+.++-....+.+++
T Consensus 737 rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-- 812 (913)
T KOG0495|consen 737 RARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-- 812 (913)
T ss_pred hHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh--
Confidence 6666666665554 445556666666666666666666666555543 222444555555555555554444433332
Q ss_pred HHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924 252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN 324 (349)
Q Consensus 252 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~ 324 (349)
+.-|+.....+...+....+++.|++.|.+..+.++..-.+|..+. .+.+.| ++-.+++......
T Consensus 813 --------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 813 --------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred --------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3456667777888889999999999999999999998889999999 999999 6777888877653
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=3e-12 Score=112.55 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=70.0
Q ss_pred hhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC
Q 018924 2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA 81 (349)
Q Consensus 2 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 81 (349)
-.|...|+.||.+||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. .
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------e 80 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------E 80 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------C
Confidence 46788999999999999999999999999998 9999987777767777777777777766655433 3
Q ss_pred ccHHHHHHHHHHHhhcCcHHH
Q 018924 82 LDWVIYATVGNGYGKVGLLDK 102 (349)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~ 102 (349)
|...||..|..+|...|++..
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH
Confidence 667777777777777777544
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=6.4e-12 Score=110.56 Aligned_cols=260 Identities=17% Similarity=0.164 Sum_probs=179.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 018924 34 SLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113 (349)
Q Consensus 34 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 113 (349)
.++..+...|+.|+..||..+|.-||..|+.+.|- +|.-|+ -...+.+...|+.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC---------
Confidence 45677888999999999999999999999999988 999888 6677788899999999999999988765
Q ss_pred hcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCCcchH
Q 018924 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE-SQALCYDTRIP 192 (349)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~ 192 (349)
.|.. .+|..|..+|...||... .+..+ . -...+...+...|.-..-..++-.+. ..+.-||..
T Consensus 80 --ep~a-Dtyt~Ll~ayr~hGDli~-fe~ve---q-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~-- 143 (1088)
T KOG4318|consen 80 --EPLA-DTYTNLLKAYRIHGDLIL-FEVVE---Q-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE-- 143 (1088)
T ss_pred --CCch-hHHHHHHHHHHhccchHH-HHHHH---H-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH--
Confidence 4555 799999999999999876 22222 1 12233444455554444444443322 122334432
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHH
Q 018924 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272 (349)
Q Consensus 193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~ 272 (349)
..+......|.++.+.+++..+...... .+ +..++.-+.....+ ..++....... .+ .|++.+|..++.
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~~ntp--vekLl~~cksl----~e-~~~s~~l~a~l~ 212 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVVDNTP--VEKLLNMCKSL----VE-APTSETLHAVLK 212 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhccCCch--HHHHHHHHHHh----hc-CCChHHHHHHHH
Confidence 3445556677788888877766543211 11 11124444443332 22222222221 13 699999999999
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCchh-HHHHh-hhhhcC--cchHHHHHHHHhCCCCCCccccc
Q 018924 273 YFKDEGDIGGAENFIELLNDKGFIPTDL-QDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLS 334 (349)
Q Consensus 273 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~ 334 (349)
+-.-.|+++.|..++.+|++.|.|-..+ |..++ + .+ ..+..+++-|...|+.|+..|+.
T Consensus 213 ~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 213 RALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 9999999999999999999998865554 45555 5 33 77888899999999999999864
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=1.2e-09 Score=96.81 Aligned_cols=273 Identities=15% Similarity=0.074 Sum_probs=203.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924 53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132 (349)
Q Consensus 53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (349)
...+.....|++++|..++.+.. +... .....|.+|...|-..|+.+++...+-.... ..|.....|..+......
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvI-kqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVI-KQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH-HhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHh
Confidence 33444444599999999999998 6454 6778899999999999999999887755543 455555899999999999
Q ss_pred cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchH----HHHHHHHHhcCcHHHH
Q 018924 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP----NFLIDVYCRNGLLEKA 208 (349)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a 208 (349)
.|.++.|.-.|.....-.+++...+---+..|-+.|+...|..-|.++.....+.|..-. ...+..+...++.+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999666666677777777788899999999999999999886432333222 2356667778888999
Q ss_pred HHHHHHHHHc-CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH----------------------hc----------
Q 018924 209 ENLVNHEKLK-GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA----------------------YQ---------- 255 (349)
Q Consensus 209 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------~~---------- 255 (349)
.+.++..... +-..+...++.++..|.+...++.|......+... ..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 9988877652 22234556677777777777777777776666650 00
Q ss_pred ------------------------ccccCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCchhHHHHh-hh
Q 018924 256 ------------------------TLVKWKP--SVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLL-DN 307 (349)
Q Consensus 256 ------------------------~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~-~~ 307 (349)
....+.| +...|.-+..+|...|++.+|..+|..+..... .+...|..+. +|
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 0012112 344566677789999999999999999998754 6667888888 99
Q ss_pred hhcC--cchHHHHHHHHhCCCCCCcc
Q 018924 308 VQNG--KSNLETLRELYGNSLAGNEE 331 (349)
Q Consensus 308 ~~~g--~~a~~~~~~m~~~~~~p~~~ 331 (349)
...| ++|++.|+..... .|+..
T Consensus 460 ~~l~e~e~A~e~y~kvl~~--~p~~~ 483 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL--APDNL 483 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc--CCCch
Confidence 9988 8999999998764 55544
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.45 E-value=3.2e-13 Score=78.72 Aligned_cols=47 Identities=30% Similarity=0.428 Sum_probs=20.3
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234 (349)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 234 (349)
|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3e-11 Score=94.94 Aligned_cols=233 Identities=10% Similarity=0.014 Sum_probs=193.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924 51 YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130 (349)
Q Consensus 51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (349)
-+.+.++|.+.|-+.+|.+.++.-. + -.|-..||..|-..|.+..+.+.|+.++.+-.+. .|.......-+.+.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL-~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSL-T--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHh-h--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 3678889999999999999999876 3 2366778888999999999999999999998874 444413445677888
Q ss_pred hhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHH
Q 018924 131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210 (349)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 210 (349)
-..++.++|.++|+......+.+......+...|.-.++++.|..+++.+++.|+ .+...|+.+.-+|.-.++++-+..
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 8899999999999966666666777777888889999999999999999999985 567789989999999999999999
Q ss_pred HHHHHHHcCcccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 211 LVNHEKLKGREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 211 ~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
-|.+....--.|+ ...|-.+.......|++..|.+.|+-.+.. -.-+...++.|.-.-.+.|++++|..+++
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 9998876433333 446777888888999999999999999853 23356788888888889999999999999
Q ss_pred HHhhCCC
Q 018924 289 LLNDKGF 295 (349)
Q Consensus 289 ~~~~~~~ 295 (349)
......|
T Consensus 454 ~A~s~~P 460 (478)
T KOG1129|consen 454 AAKSVMP 460 (478)
T ss_pred HhhhhCc
Confidence 9888755
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=6.9e-11 Score=97.03 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhH
Q 018924 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 301 (349)
|+.....|...|-+.|+..+|.+++-.-- ...| |..+..=|...|....-++++..+|++..- ..|+..-|
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsy-------ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~~~kw 662 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSY-------RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPNQSKW 662 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcc-------cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCccHHHH
Confidence 34445555555555555555555444332 2233 444544445555556666677777765543 24788889
Q ss_pred HHHh--hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCC
Q 018924 302 DKLL--DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEG 338 (349)
Q Consensus 302 ~~l~--~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~ 338 (349)
..++ ++.+.| +.|+++++...++ +..|...+..+++
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvr 702 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHH
Confidence 9888 777777 8999999998765 5556555554443
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.7e-10 Score=97.04 Aligned_cols=283 Identities=10% Similarity=-0.008 Sum_probs=218.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (349)
+.........-|...+++.+..++.+.+. +... +....+..-|.++...|+..+-..+=.++.+. .|+.+.+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~ll-e~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELL-EKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHH-hhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhH
Confidence 44555556666778899999999999988 5443 66666667778999999988888888888875 55665799999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCcH
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI-PNFLIDVYCRNGLL 205 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 205 (349)
..-|...|...+|.+.|.....-.+.-...|-....++...|..++|...+...-+. -|..+. +--+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccH
Confidence 999999999999999999322222222357888899999999999999999887763 222111 11244457889999
Q ss_pred HHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCC-CCHHHHHHHHHHHHhcCChhhHH
Q 018924 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK-PSVESLAACLDYFKDEGDIGGAE 284 (349)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~ 284 (349)
+.|.+.|.......+ -|+...+-+.-.....+.+.+|..+|+..+........-. -...+++.|..+|.+.+++++|.
T Consensus 397 kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999999887543 3677778787777788999999999999884311111111 24567889999999999999999
Q ss_pred HHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCC
Q 018924 285 NFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEG 338 (349)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~ 338 (349)
..++......+.+..+|.++. .|...| +.|.+.|.+-. .+.||..+...+|+
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 999999999999999999999 999888 99999999875 47898877655554
No 60
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.6e-10 Score=103.01 Aligned_cols=315 Identities=12% Similarity=-0.023 Sum_probs=227.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC--CCCcc--
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEME----ENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP--NVALD-- 83 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~-- 83 (349)
|...|-.+...+-+ ++...++.+|.... ..+-++-+...|.+...+...|+++.|...|....... ...++
T Consensus 413 d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 55666655555444 44455577776654 44555777888999999999999999998888776220 11122
Q ss_pred ----HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHH
Q 018924 84 ----WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN 159 (349)
Q Consensus 84 ----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (349)
..+--.+..++-..++.+.|.+.|..+... .|.-...|.-++......+...+|...++........++..++.
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 222234666777778899999999998875 34443466666655555678888998888555555666677778
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHh------------cCcHHHHHHHHHHHHHcCcccchhh
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQAL-CYDTRIPNFLIDVYCR------------NGLLEKAENLVNHEKLKGREIHVKS 226 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~ 226 (349)
+...+.+...+..|.+-|....+.-. .+|+.+.-.|...|.+ .+..++|.++|.+..+..+. |...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhh
Confidence 88888888888888887776655322 2465555556665543 24578999999999987765 7888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-C-CCchhHHHH
Q 018924 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG-F-IPTDLQDKL 304 (349)
Q Consensus 227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~l 304 (349)
-|-+...++..|++.+|..+|.+..+. . .-+..+|..+.++|..+|++..|.++|+...+.. . .+......|
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa-----~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREA-----T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHH-----H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 888999999999999999999999985 2 3456788899999999999999999999887763 3 556677888
Q ss_pred h-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCC
Q 018924 305 L-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEG 338 (349)
Q Consensus 305 ~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~ 338 (349)
. ++.+.| .+|.+.+..... ..|...++.+.++
T Consensus 723 ara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHH
Confidence 8 888888 788877766655 4677776655444
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.43 E-value=3.7e-09 Score=90.78 Aligned_cols=307 Identities=13% Similarity=0.047 Sum_probs=224.7
Q ss_pred hhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC
Q 018924 3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYADASDHEGIDKILTMMEADPNV 80 (349)
Q Consensus 3 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 80 (349)
++...|+.-+...|-.=...|-..|.+-.+..+....+.-|+.-. ..||..-...|.+.+.++-|..+|.... . -+
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al-q-vf 546 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL-Q-VF 546 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH-h-hc
Confidence 345566777777777777777777777777777777776665422 2377777777888888888888887776 3 22
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHH
Q 018924 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV 160 (349)
Q Consensus 81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 160 (349)
+.+...|...+..--..|..++...+|++.....+ .....|......+-..|+...|..++...-.-.+.+...|...
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p--kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 24566677777666777888888888888887533 3335777777778888899888888884444445566778888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc-hhhHHHHHHHHhcCCC
Q 018924 161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSWYYLATGYRQNSQ 239 (349)
Q Consensus 161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 239 (349)
+..-....+++.|..+|.+... ..|+..+|..-+....-.+..++|.+++++..+.- |+ ...|..+.+.+-+.++
T Consensus 625 vKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHH
Confidence 8888888889999999888876 35677777777777777888899999888887743 33 3466777777888888
Q ss_pred HHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchH
Q 018924 240 IHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNL 315 (349)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~ 315 (349)
.+.|.+.|..-.+ .-|+ ...|..|.+.=-+.|.+-.|+.++++.+-.+|.+...|-..| .-.+.| +.|.
T Consensus 701 ie~aR~aY~~G~k-------~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 701 IEMAREAYLQGTK-------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHhccc-------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 8888888877552 3454 455666666667788999999999999988898889999988 888888 6777
Q ss_pred HHHHHHHhC
Q 018924 316 ETLRELYGN 324 (349)
Q Consensus 316 ~~~~~m~~~ 324 (349)
.+..+..+.
T Consensus 774 ~lmakALQe 782 (913)
T KOG0495|consen 774 LLMAKALQE 782 (913)
T ss_pred HHHHHHHHh
Confidence 666665543
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=5.2e-10 Score=96.34 Aligned_cols=242 Identities=17% Similarity=0.150 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhcC----CCC-CccHHHH-HHHHHHHhhcCcHHHHHHHHHHHHHh------hcC
Q 018924 49 YTYCTRLSAYADASDHEGIDKILTMMEAD----PNV-ALDWVIY-ATVGNGYGKVGLLDKALAMLKKSEEQ------IKG 116 (349)
Q Consensus 49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~------~~~ 116 (349)
.+...+...|...|+++.|+.++++..+. .|. .|...+- +.+...|...+++++|..+|+++... ...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36666888899999999999888776511 121 1333332 34677888899999999999888653 122
Q ss_pred CcchhhHHHHHHHHhhcCCHHHHHHHHH--HHHh-h----ccCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhc---CC
Q 018924 117 AKVNSAYNVILTLYGKYGKKDDVLRIWE--LYKK-A----VKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQ---AL 185 (349)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~-~----~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~ 185 (349)
|....+++.|..+|.+.|++++|...++ +... . ..|.. ..++.++..|+..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 3443567788888999999999988887 2111 1 11222 23667778888889999999888876542 11
Q ss_pred CCC----cchHHHHHHHHHhcCcHHHHHHHHHHHHHcC----c--cc-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924 186 CYD----TRIPNFLIDVYCRNGLLEKAENLVNHEKLKG----R--EI-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254 (349)
Q Consensus 186 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 254 (349)
.++ ..+++.|...|...|++++|.++++...... - .+ ....++.+...|.+.+++.+|.++|.+...-.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 3467888899999999999999998876421 1 11 13356778888888889988988888876542
Q ss_pred ccccc-CCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924 255 QTLVK-WKPS-VESLAACLDYFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 255 ~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 291 (349)
...| -.|+ ..+|..|...|...|+++.|.++.+...
T Consensus 440 -~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 -KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred -HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1112 1232 4678888999999999999998887665
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=6e-10 Score=91.76 Aligned_cols=233 Identities=14% Similarity=0.067 Sum_probs=144.0
Q ss_pred CChHHHHHHHHHhhcCCCCCcc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924 62 SDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139 (349)
Q Consensus 62 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (349)
+..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+. .|+...+|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4556666666666523233332 345667777888888888888888888774 455557888888888888888888
Q ss_pred HHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924 140 LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219 (349)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (349)
...|+......+.+..+|..+..++...|++++|.+.++...+.. |+..........+...+++++|...|.+.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888884444444445677777888888888888888888887753 333222222223345677888888886655322
Q ss_pred cccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924 220 REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 220 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 298 (349)
.|+...+ .+. ....|+...+ +.+..+.+.......+.| ....|..+...+...|++++|...|++..+..+++.
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2222221 222 2234554443 344444432000011122 235677778888888888888888888888776655
Q ss_pred hhHHH
Q 018924 299 DLQDK 303 (349)
Q Consensus 299 ~~~~~ 303 (349)
.-+..
T Consensus 271 ~e~~~ 275 (296)
T PRK11189 271 VEHRY 275 (296)
T ss_pred HHHHH
Confidence 44444
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=5e-10 Score=96.42 Aligned_cols=241 Identities=17% Similarity=0.156 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhhc------CCC
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-----G-ITYDRY-TYCTRLSAYADASDHEGIDKILTMMEA------DPN 79 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~ 79 (349)
..+...|...|...|+++.|..++++..+. | ..|... ..+.+...|...+++++|..+|+++.. -..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666999999999999999999998764 2 123443 344477788899999999988887742 112
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh------hcCCcchhhHHHHHHHHhhcCCHHHHHHHHH--H--HHhh
Q 018924 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------IKGAKVNSAYNVILTLYGKYGKKDDVLRIWE--L--YKKA 149 (349)
Q Consensus 80 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~--~~~~ 149 (349)
.+.-..+++.|..+|.+.|++++|...+++..+- ...+.....++.+...+...+++++|..+++ . ....
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2223456778888999999999998888776442 1123333457788888999999999999998 2 1112
Q ss_pred ccCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHhcC----C---CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH-
Q 018924 150 VKVLN----NGYRNVISSLLKLDDLESAEKIFEEWESQA----L---CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL- 217 (349)
Q Consensus 150 ~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 217 (349)
..++. .+++.+...|...|++++|.++++++.... . .-....++.|...|.+.++++.|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22333 478999999999999999999999887521 1 11234567788999999999999999986543
Q ss_pred ---cCcc-cc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 218 ---KGRE-IH-VKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 218 ---~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
.|+. |+ ..+|..|...|...|+++.|.++.......
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2321 22 357899999999999999999999888743
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=7.3e-09 Score=90.34 Aligned_cols=284 Identities=16% Similarity=0.161 Sum_probs=189.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc---
Q 018924 21 KLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV--- 97 (349)
Q Consensus 21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 97 (349)
..+.+.|++++|++.++.-... +.............+.+.|+.++|..+|..+. +.++ .+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li-~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELI-DRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHhhhccc
Confidence 4468899999999999876554 33234466777888999999999999999999 5453 4444445555555222
Q ss_pred --CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH-HHHH-HHHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924 98 --GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL-RIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESA 173 (349)
Q Consensus 98 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a 173 (349)
.+.+...++|+++...- |.. .+...+.-.+..-..+.... .++. +...|+| .+|+.+-..|.......-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s-~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRS-DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccc-cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 35788889999987753 333 33333333333323444333 3444 5555554 3566776777766666656
Q ss_pred HHHHHHHHhc----C----------CCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 174 EKIFEEWESQ----A----------LCYDT--RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 174 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
.+++...... + -+|+. .++.-+...|...|++++|.+.+++.++..+. .+..|..-...+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 6666655432 1 12333 24456677788999999999999999986543 366788888999999
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCc--h----hHHH--Hh-h
Q 018924 238 SQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPT--D----LQDK--LL-D 306 (349)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~----~~~~--l~-~ 306 (349)
|++.+|.+.++.+... .+ |...-+-....+.+.|++++|.+++....+.+. |.. . .|.. .. +
T Consensus 242 G~~~~Aa~~~~~Ar~L-------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 242 GDLKEAAEAMDEAREL-------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred CCHHHHHHHHHHHHhC-------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999853 44 555666667788899999999999998877653 211 1 2222 22 7
Q ss_pred hhhcC--cchHHHHHHH
Q 018924 307 NVQNG--KSNLETLREL 321 (349)
Q Consensus 307 ~~~~g--~~a~~~~~~m 321 (349)
|.+.| ..|++.|..+
T Consensus 315 ~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 77777 5555544433
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=4.5e-09 Score=78.99 Aligned_cols=198 Identities=13% Similarity=0.042 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924 50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129 (349)
Q Consensus 50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (349)
+...|.-.|...|+...|.+-+++.. +.+. .+..+|..+...|.+.|..+.|.+.|++..+. .|+...+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL-~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKAL-EHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 34455666777777777777777766 4443 45566667777777777777777777777663 34443577777777
Q ss_pred HhhcCCHHHHHHHHH--HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHH
Q 018924 130 YGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK 207 (349)
Q Consensus 130 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 207 (349)
+|..|++++|...|+ +......-...+|..+.-+..+.|+.+.|...|+...+.. +......-.+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 777777777777777 3333444444567777776777777777777777776653 2233455566666777777777
Q ss_pred HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
|...++.....+. ++..+.-..|..--..|+-+.+-++=..+...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777766555 56666666666666667766666665555554
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=5.3e-09 Score=78.59 Aligned_cols=202 Identities=17% Similarity=0.043 Sum_probs=166.1
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
.+...|.-.|...|+...|..-+++..+. .|+...+|..+...|.+.|+.+.|.+.|+....-.+-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 34556888899999999999999999985 5666579999999999999999999999955555556667889999999
Q ss_pred hccCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924 165 LKLDDLESAEKIFEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 243 (349)
|..|.+++|...|+.....-.- .-..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 9999999999999998864221 22456778888888999999999999999986654 455677788888899999999
Q ss_pred HHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
..+++.... +..++..+....|+.-.+.|+.+.+.+.=..+.+..|
T Consensus 193 r~~~~~~~~------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 193 RLYLERYQQ------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHh------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999998876 4458999888888888899999999888777777644
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=6.5e-09 Score=85.64 Aligned_cols=217 Identities=13% Similarity=-0.010 Sum_probs=153.3
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHH
Q 018924 27 GNFEKLDSLMHEMEENG-ITYD--RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103 (349)
Q Consensus 27 g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 103 (349)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++.. +.+. .+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al-~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQAL-ALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 44566777888887542 2222 3467788888999999999999999988 5443 5678899999999999999999
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018924 104 LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183 (349)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 183 (349)
...|++..+. .|+...+|..+..++...|++++|.+.|+...... |+..........+...++.++|...+......
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999874 56555788999999999999999999999433333 33322222223344677899999999776543
Q ss_pred CCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc---Ccc---cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK---GRE---IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
. .++...+ .+ .....|+...+ ..+..+.+. .+. .....|..+...+...|++++|...|+++.+.
T Consensus 195 ~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 L-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred C-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 3333222 22 33345555444 344444321 111 13457889999999999999999999999964
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.2e-08 Score=83.20 Aligned_cols=195 Identities=11% Similarity=0.027 Sum_probs=109.7
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 172 (349)
......+++.|+.+-++.++. .+.....|-.-...+...+++++|.-.|+....--|-+...|.-++.+|...|.+.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 334445555555555555542 222223444444555666666666666663333333445566666666666666666
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHH-HHHHh-cCcHHHHHHHHHHHHHcCcccch-hhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924 173 AEKIFEEWESQALCYDTRIPNFLI-DVYCR-NGLLEKAENLVNHEKLKGREIHV-KSWYYLATGYRQNSQIHKAVEAMKK 249 (349)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 249 (349)
|...-+...+. ++.+..+.+.+. ..+.- ..--++|.++++.-.... |+. ...+.+...+...|..++++.++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 66555544432 233333333321 11111 122356666666555522 332 2345556666777777777777777
Q ss_pred HHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299 (349)
Q Consensus 250 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (349)
.+ ...||....+.|.+.+...+.+++|.+.|....+.+|.+..
T Consensus 464 ~L-------~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 464 HL-------IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HH-------hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 77 34777777777777777777777777777777777665543
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2.2e-09 Score=89.08 Aligned_cols=230 Identities=17% Similarity=0.109 Sum_probs=181.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96 (349)
Q Consensus 17 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 96 (349)
......+.-.|+...|..-|+..+.....++. .|.-+...|....+.++..+.|+... +.+. -+..+|..-...+.-
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~-~ldp-~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAE-DLDP-ENPDVYYHRGQMRFL 406 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHH-hcCC-CCCchhHhHHHHHHH
Confidence 33334455679999999999999987554333 37777888999999999999999988 5555 456677777788888
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHH
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 176 (349)
.+++++|..-|++.+. +.|.....|-.+..+..+.+.++++...|+.....+|..+..|+.....+...++++.|.+.
T Consensus 407 L~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 8999999999999987 45666567778888888999999999999988888888889999999999999999999999
Q ss_pred HHHHHhcCCCC-----C--cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924 177 FEEWESQALCY-----D--TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249 (349)
Q Consensus 177 ~~~~~~~~~~~-----~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 249 (349)
|+...+..... + +.+.-.++..- =.+++..|..++++..+.+++ ....|..|...-.+.|+.++|+++|++
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99988743211 1 11222222222 238899999999999986655 456789999999999999999999999
Q ss_pred HHHH
Q 018924 250 VLAA 253 (349)
Q Consensus 250 ~~~~ 253 (349)
....
T Consensus 563 sa~l 566 (606)
T KOG0547|consen 563 SAQL 566 (606)
T ss_pred HHHH
Confidence 7753
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=1.6e-08 Score=88.23 Aligned_cols=256 Identities=16% Similarity=0.173 Sum_probs=183.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCCCccH-HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc
Q 018924 55 LSAYADASDHEGIDKILTMMEADPNVALDW-VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (349)
...+...|++++|++.++.-. ..+ +|. .........+.+.|+.++|..+|..+.+.+ |+...-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~--~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE--KQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh--hhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 445678899999999998754 244 554 445678899999999999999999999975 45523555555555222
Q ss_pred -----CCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH-HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHH
Q 018924 134 -----GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL-ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK 207 (349)
Q Consensus 134 -----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 207 (349)
.+.+....+|+...... |.......+.-.+.....+ ..+..++..+...|++ .+++.|-..|....+.+-
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 24666777887444443 4333333333333332233 3455666777788864 367777777776666666
Q ss_pred HHHHHHHHHHc----C----------cccchh--hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHH
Q 018924 208 AENLVNHEKLK----G----------REIHVK--SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAAC 270 (349)
Q Consensus 208 a~~~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l 270 (349)
...++...... + -.|... ++..+...|...|++++|+++++++++. .|+ +..|..-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-------tPt~~ely~~K 234 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-------TPTLVELYMTK 234 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCcHHHHHHH
Confidence 66666655432 1 123332 4456677888999999999999999965 676 6778888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCC
Q 018924 271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSL 326 (349)
Q Consensus 271 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~ 326 (349)
.+.+-+.|++++|.+.++..+..+..|...-+... .+.+.| ++|.+++....+.+.
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 88999999999999999999999888888877788 999999 999999999877665
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.24 E-value=8.4e-10 Score=89.66 Aligned_cols=254 Identities=15% Similarity=0.102 Sum_probs=163.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL 99 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 99 (349)
++.+.-.|++..++.-.+ ......+.+......+.+++...|+.+. ++.++. ... .|.......+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~-~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIK-KSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS--TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhc-cCC-ChhHHHHHHHHHHHhCccc
Confidence 344556788888886665 3322222234456667888888998774 345554 333 5666666656555554455
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 018924 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 179 (349)
-+.+..-+++..........+.........+...|++++|++++.. + .+.......+..|.+.++++.|.+.++.
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~---~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK---G--GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT---T--TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc---c--CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554433322222212333344566778999999988872 1 3445666788899999999999999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 018924 180 WESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ 255 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 255 (349)
|.+. ..|. +...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+...
T Consensus 157 ~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--- 229 (290)
T PF04733_consen 157 MQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--- 229 (290)
T ss_dssp HHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---
T ss_pred HHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---
Confidence 9874 3343 33334444433 34689999999998765 456888889999999999999999999999874
Q ss_pred ccccCCC-CHHHHHHHHHHHHhcCCh-hhHHHHHHHHhhCCC
Q 018924 256 TLVKWKP-SVESLAACLDYFKDEGDI-GGAENFIELLNDKGF 295 (349)
Q Consensus 256 ~~~~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~ 295 (349)
..| +..+...++.+....|+. +.+.+.+.++....|
T Consensus 230 ----~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 230 ----KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp ----C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred ----hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 344 567778888888888888 667788888877644
No 73
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=3.2e-07 Score=76.34 Aligned_cols=304 Identities=12% Similarity=0.085 Sum_probs=154.0
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-ccHHHH
Q 018924 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LDWVIY 87 (349)
Q Consensus 9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 87 (349)
..|+...|++.|+.=.+-+.++.|..+++...-. .|+..+|.-...-=-+.|++..+.++|+......|-. .+...|
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3566666666666666666666666666665542 3566666555555555666666666665544111110 112222
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcch------------------------------------------hhHHH
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN------------------------------------------SAYNV 125 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------------------------------~~~~~ 125 (349)
.+....=.++..++.|.-+|+-..+.-+..... .+|--
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd 327 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence 222222233444444444444433321111111 23333
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhccCChh--hHH----HHHHHH----hccCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 018924 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYR----NVISSL----LKLDDLESAEKIFEEWESQALCYDTRIPNFL 195 (349)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~----~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (349)
.+..-...|+.+...++|+....+++|-.. -|. ..|+.+ ....+.+.+.++++..++. ++....|+..+
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKi 406 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKI 406 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHH
Confidence 333334444555555555433334443211 010 011111 1334445555555444442 23333333332
Q ss_pred HHHH----HhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHH
Q 018924 196 IDVY----CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAAC 270 (349)
Q Consensus 196 ~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l 270 (349)
=-.| .+..++..|.+++....- .-|-..+|...|..-.+.++++....++.+.++ ..| |..+|...
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-------~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-------FSPENCYAWSKY 477 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cChHhhHHHHHH
Confidence 2222 234455555555554443 335555666666666666777777777777763 345 55666666
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCC--CCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924 271 LDYFKDEGDIGGAENFIELLNDKGF--IPTDLQDKLL-DNVQNG--KSNLETLRELYGN 324 (349)
Q Consensus 271 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~ 324 (349)
...=...|+.+.|..+|..+.+... .+...|.+.| .-...| +.|..+++++.+.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 6666678888888888888877633 2334566666 444555 7888888888765
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=2.1e-07 Score=79.34 Aligned_cols=92 Identities=12% Similarity=-0.038 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCCc--chHHHHHHHHHh
Q 018924 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL-CYDT--RIPNFLIDVYCR 201 (349)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~ 201 (349)
.+...+...|++++|...++......+.+...+..+...+...|++++|...+++...... .++. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3444555556666666665533333333344455555555556666666666555544321 1111 123345555555
Q ss_pred cCcHHHHHHHHHHHH
Q 018924 202 NGLLEKAENLVNHEK 216 (349)
Q Consensus 202 ~~~~~~a~~~~~~~~ 216 (349)
.|++++|..++++..
T Consensus 199 ~G~~~~A~~~~~~~~ 213 (355)
T cd05804 199 RGDYEAALAIYDTHI 213 (355)
T ss_pred CCCHHHHHHHHHHHh
Confidence 566666666665554
No 75
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.6e-08 Score=78.98 Aligned_cols=300 Identities=12% Similarity=0.035 Sum_probs=175.4
Q ss_pred hhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc
Q 018924 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD 83 (349)
Q Consensus 4 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 83 (349)
|...|+.....-|++++..+.+..++.+|++++..-.++..+ +......|..+|....++..|-..++++. . .-|.
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~-q--l~P~ 76 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLG-Q--LHPE 76 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hChH
Confidence 344555555666888898899999999999999888776432 77788889999999999999999999997 2 3366
Q ss_pred HHHHHH-HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHH--HHhhcCCHHHHHHHHHHHHhhccCChhhHHHH
Q 018924 84 WVIYAT-VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILT--LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV 160 (349)
Q Consensus 84 ~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 160 (349)
..-|.. -...+.+++.+.+|+++...|... +.. ..-..-+. .....+++..+..+++... ...+..+.+..
T Consensus 77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L-~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~ 150 (459)
T KOG4340|consen 77 LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PAL-HSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINL 150 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHH-HHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccc
Confidence 555542 356677888899999998887542 111 11111111 2234566666666665211 01122233333
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-------------cchh--
Q 018924 161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-------------IHVK-- 225 (349)
Q Consensus 161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~-- 225 (349)
.-...+.|+++.|.+-|+...+-+--.....||.-+ +..+.|+++.|.+...++.++|++ ||+.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv 229 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV 229 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc
Confidence 333446777777777777766533222233555333 444566777777777777666543 1111
Q ss_pred -------------hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 226 -------------SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 226 -------------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
.+|.-...+.+.++++.|.+.+..|--. ..-..|+.|...+.-. --.+++....+-+.-+..
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR----aE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR----AEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ 304 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc----ccccCCchhhhHHHHh-cccCCccccHHHHHHHHh
Confidence 1222222345566777776666655321 1223344554433211 123445555555555555
Q ss_pred CCCCCchhHHHHh-hhhhcC--cchHHHHH
Q 018924 293 KGFIPTDLQDKLL-DNVQNG--KSNLETLR 319 (349)
Q Consensus 293 ~~~~~~~~~~~l~-~~~~~g--~~a~~~~~ 319 (349)
..|-+..+|..++ .||++. +-|-+++.
T Consensus 305 ~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 305 QNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 5565666677777 777766 55554443
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=3.8e-07 Score=77.81 Aligned_cols=262 Identities=11% Similarity=0.093 Sum_probs=161.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA----DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG 95 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 95 (349)
...+...|++++|.+++++..+.. +.|...+.. ...+. ..+..+.+.+.+... ....+........+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 345677899999999999988763 224434442 22222 245555566655542 2233233445556778899
Q ss_pred hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc--CCh--hhHHHHHHHHhccCCHH
Q 018924 96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLN--NGYRNVISSLLKLDDLE 171 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~ 171 (349)
..|++++|.+.+++..+.. |+....+..+...+...|++++|...++......+ |+. ..|..+...+...|+++
T Consensus 126 ~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 126 EAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999854 44436888999999999999999999993333332 232 24557888899999999
Q ss_pred HHHHHHHHHHhcCCCCC-cchH-H--HHHHHHHhcCcHHHHHHHHHHHHHc---CcccchhhHH--HHHHHHhcCCCHHH
Q 018924 172 SAEKIFEEWESQALCYD-TRIP-N--FLIDVYCRNGLLEKAENLVNHEKLK---GREIHVKSWY--YLATGYRQNSQIHK 242 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~li~~~~~~~~~~~ 242 (349)
+|..++++.......+. .... + .++.-+...|..+.+.++ +.+... ........+. ....++...|+.++
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 99999999864322111 1111 1 223333344544444433 333221 1111122344 23445677888999
Q ss_pred HHHHHHHHHHHhcccccCCC--C----HHHHHHHHH--HHHhcCChhhHHHHHHHHhhC
Q 018924 243 AVEAMKKVLAAYQTLVKWKP--S----VESLAACLD--YFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~p--~----~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~ 293 (349)
|..++..+... ...+ . ..+-..++. ++...|+.++|.+.+......
T Consensus 283 a~~~L~~l~~~-----~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 283 LDKLLAALKGR-----ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHH-----HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999888764 2110 1 111122222 356788999998888877654
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.2e-07 Score=75.05 Aligned_cols=301 Identities=14% Similarity=0.024 Sum_probs=200.7
Q ss_pred CCCccHHHHHHHHHHHHh--cCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH
Q 018924 8 GLARTTVVYNSMLKLYYK--TGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW 84 (349)
Q Consensus 8 g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 84 (349)
.++|+......-+.++++ .++...|...+-.+... -++-|+.....+..++...|+.++|+..|++.. . +.|..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-~--~dpy~ 265 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-C--ANPDN 265 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-h--CChhh
Confidence 344444444444555544 34444455544444332 355577788899999999999999999999877 3 33433
Q ss_pred H-HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924 85 V-IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS 163 (349)
Q Consensus 85 ~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 163 (349)
. ......-.+.+.|+.++...+...+.... .... ..|..-+.......++..|+.+-+......+.+...|-.-...
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta-~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~l 343 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTA-SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRL 343 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcch-hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHH
Confidence 2 22333445667888888888877776532 1233 4566666677778888888888774444444445556666677
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHH-HHHh-cCCCHH
Q 018924 164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA-TGYR-QNSQIH 241 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~ 241 (349)
+...+++++|.-.|+...... +-+...|..|+..|...|++.+|...-+...+. ..-+..+...+. ..|. ...--+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 888999999999999887753 456788999999999999999988776655442 122445544442 2222 223457
Q ss_pred HHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHH
Q 018924 242 KAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLET 317 (349)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~ 317 (349)
+|..++++.+ .+.|+- ...+.+...|...|..+.+..+++..... .+|....+.+. .+.... ++|++.
T Consensus 422 KAKkf~ek~L-------~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 422 KAKKFAEKSL-------KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-FPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred HHHHHHHhhh-------ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh-ccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 8999999887 557763 45566777889999999999999988765 46666677777 555444 677777
Q ss_pred HHHHHh
Q 018924 318 LRELYG 323 (349)
Q Consensus 318 ~~~m~~ 323 (349)
|....+
T Consensus 494 y~~ALr 499 (564)
T KOG1174|consen 494 YYKALR 499 (564)
T ss_pred HHHHHh
Confidence 665543
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=8.5e-07 Score=76.60 Aligned_cols=303 Identities=14% Similarity=0.098 Sum_probs=193.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
.+.+.|+++.-.+....++++|++.|......+.. |...|.-+.-.-++.++++.......++. .... .....|..+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LL-ql~~-~~ra~w~~~ 149 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLL-QLRP-SQRASWIGF 149 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHH-Hhhh-hhHHHHHHH
Confidence 45677888888888889999999999998876432 56677777766777788887777766665 3222 445556777
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcC-CcchhhHHHHH------HHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKG-AKVNSAYNVIL------TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS 163 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 163 (349)
..++--.|+...|..++++..+.... |+. ..+.-.. ....++|..+.|.+.+.+....+......-..-...
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~-~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSK-EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHH
Confidence 77888888888888888888775432 333 3333222 234456777777777764444333333333445556
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHh-cCcHHH----------------------------------
Q 018924 164 LLKLDDLESAEKIFEEWESQALCYDTRIPN-FLIDVYCR-NGLLEK---------------------------------- 207 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~-~~~~~~---------------------------------- 207 (349)
+.+.+++++|..++..+...+ ||..-|+ .+..++.+ .+..+.
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI 306 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH
Confidence 667777777777777777653 4443333 22222221 111110
Q ss_pred HHHHHHHHHHcCc----------------------------------------------ccchhh--HHHHHHHHhcCCC
Q 018924 208 AENLVNHEKLKGR----------------------------------------------EIHVKS--WYYLATGYRQNSQ 239 (349)
Q Consensus 208 a~~~~~~~~~~~~----------------------------------------------~~~~~~--~~~li~~~~~~~~ 239 (349)
.-.++..+.++|+ +|.... +-.++..|-+.|+
T Consensus 307 vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 1111111112221 123222 3446677788899
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchH
Q 018924 240 IHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNL 315 (349)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~ 315 (349)
++.|..+++.++. -.|+. ..|..-.+.+.+.|++++|..++.+..+.+.+|...-..-. ...+.. ++|.
T Consensus 387 ~~~A~~yId~AId-------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 387 YEVALEYIDLAID-------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHHHHHHHHHhc-------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 9999999999984 47764 45555567788999999999999999988777766554555 556666 8888
Q ss_pred HHHHHHHhCCC
Q 018924 316 ETLRELYGNSL 326 (349)
Q Consensus 316 ~~~~~m~~~~~ 326 (349)
++.....+.|.
T Consensus 460 ~~~skFTr~~~ 470 (700)
T KOG1156|consen 460 EVLSKFTREGF 470 (700)
T ss_pred HHHHHhhhccc
Confidence 88888877775
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=6.9e-09 Score=84.38 Aligned_cols=251 Identities=12% Similarity=0.064 Sum_probs=166.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (349)
++-+.-.|++..++.-.+ .. ......+.....-+.+++...|+.+.++ .++... ..|+. .+...+...+...+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l-~av~~la~y~~~~~ 80 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LK-SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPEL-QAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CH-TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCC-HHHHHHHHHHCTST
T ss_pred HHHHHHhhhHHHHHHHhh-cc-CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhH-HHHHHHHHHHhCcc
Confidence 344556799998886666 44 3333344555566888999999877654 343332 35555 56655655555445
Q ss_pred CHHHHHHHHH-HHHhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHH
Q 018924 135 KKDDVLRIWE-LYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212 (349)
Q Consensus 135 ~~~~a~~~~~-~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 212 (349)
+-+.++.-++ ....... .+..........+...|++++|.+++... .+.......+..|.+.++++.|.+.+
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555554 2112222 22333334445667889999999888642 34566777889999999999999999
Q ss_pred HHHHHcCcccchhhHHHHHHHHh----cCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 213 NHEKLKGREIHVKSWYYLATGYR----QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 213 ~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
+.|.+.+ .|. +...+..++. ..+.+.+|..+|+++.+ ...++..+.+.+..+....|++++|.+++.
T Consensus 155 ~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 155 KNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD------KFGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC------CS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9998753 343 3333444433 34579999999999864 567888999999999999999999999999
Q ss_pred HHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHHHHhCCCCCC
Q 018924 289 LLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRELYGNSLAGN 329 (349)
Q Consensus 289 ~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~m~~~~~~p~ 329 (349)
+....++.++.+...++ +....| +.+.+.+.++... .|+
T Consensus 226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 99988887888888888 666666 3577788887763 454
No 80
>PF12854 PPR_1: PPR repeat
Probab=99.10 E-value=1.2e-10 Score=61.00 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=28.2
Q ss_pred hCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018924 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEME 40 (349)
Q Consensus 7 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 40 (349)
+|++||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888888888888888888888888888873
No 81
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=5.8e-08 Score=82.49 Aligned_cols=255 Identities=12% Similarity=0.006 Sum_probs=179.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH
Q 018924 21 KLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL 100 (349)
Q Consensus 21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 100 (349)
.-+.+.|++.+|.-.|+...+.+.. +...|..|.......++-..|+..+++.. +.+. -+....-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl-~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCL-ELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHhhhhhH
Confidence 3467889999999999998887543 66789988888888888888998888887 5444 4566777888889999999
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHHHHH---------HHHhhcCCHHHHHHHHH-H-HHhhccCChhhHHHHHHHHhccCC
Q 018924 101 DKALAMLKKSEEQIKGAKVNSAYNVIL---------TLYGKYGKKDDVLRIWE-L-YKKAVKVLNNGYRNVISSLLKLDD 169 (349)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~-~-~~~~~~~~~~~~~~li~~~~~~~~ 169 (349)
..|.+.++.-+...+ .- .|.... ..+..........++|- + ...+..+|...+..|.-.|--.|+
T Consensus 370 ~~Al~~L~~Wi~~~p--~y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKP--KY--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHhCc--cc--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999998888765321 11 111110 12222233344455555 2 233334777778888888888899
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc-hhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSWYYLATGYRQNSQIHKAVEAMK 248 (349)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 248 (349)
+++|...|+.++... +-|..+||.|...++...+.++|...|++.++. +|+ +.....|..+|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999988854 456778999999999999999999999999884 454 3455667778899999999999888
Q ss_pred HHHHHhcc----cccCCCCHHHHHHHHHHHHhcCChhhHHH
Q 018924 249 KVLAAYQT----LVKWKPSVESLAACLDYFKDEGDIGGAEN 285 (349)
Q Consensus 249 ~~~~~~~~----~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 285 (349)
.++..... .....++...|..|=.++.-.++.|.+.+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 87765222 11122334566666666666666664443
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=2.5e-06 Score=71.29 Aligned_cols=82 Identities=6% Similarity=-0.035 Sum_probs=56.7
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--
Q 018924 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-- 311 (349)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-- 311 (349)
.++.++..|.+++-.++ |.-|...+|...|..=.+.++++....+++...+.+|.+-.+|.... .-...|
T Consensus 415 IRq~~l~~ARkiLG~AI-------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI-------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHcccHHHHHHHHHHh-------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 34555666666666665 66777777777777777777888888888888777777777777766 555555
Q ss_pred cchHHHHHHHHh
Q 018924 312 KSNLETLRELYG 323 (349)
Q Consensus 312 ~~a~~~~~~m~~ 323 (349)
+.|..+|.-..+
T Consensus 488 dRaRaifelAi~ 499 (677)
T KOG1915|consen 488 DRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHHhc
Confidence 677777776654
No 83
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.00 E-value=9.3e-07 Score=82.59 Aligned_cols=233 Identities=14% Similarity=0.090 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc---cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHH
Q 018924 48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL---DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124 (349)
Q Consensus 48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (349)
...|-..|.-....++.++|.++.++....-++.- -...|.++++.-..-|.-+...++|++..+- .+.-.+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHHH
Confidence 34677777777788888888888877763333321 2345666777766777777777888887662 22224777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcC
Q 018924 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YDTRIPNFLIDVYCRNG 203 (349)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 203 (349)
.|...|.+.+.+++|.++++.+...+......|...+..+.+..+-+.|..++.+.++.-.. -........+..-.+.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 88888888888888888888444444555567778888888888888888888777664111 02333444555556778
Q ss_pred cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChh
Q 018924 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIG 281 (349)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~ 281 (349)
+.+++..+|+......++ -...|+..|..-.++|+.+.+..+|++++.. ++.|- -..|...+..=...|+-.
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l-----~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-----KLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CCChhHhHHHHHHHHHHHHhcCchh
Confidence 888888888877765544 4567888888888888888888888888876 66664 245666666555566655
Q ss_pred hHHHHHHH
Q 018924 282 GAENFIEL 289 (349)
Q Consensus 282 ~a~~~~~~ 289 (349)
.++.+=.+
T Consensus 1689 ~vE~VKar 1696 (1710)
T KOG1070|consen 1689 NVEYVKAR 1696 (1710)
T ss_pred hHHHHHHH
Confidence 55544333
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.96 E-value=1.9e-07 Score=71.89 Aligned_cols=160 Identities=20% Similarity=0.157 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHh
Q 018924 52 CTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131 (349)
Q Consensus 52 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (349)
..+-..+...|+-+....+..... . ..+.+....+.++....+.|++..|...|++... +.|+...+|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~-~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA-I-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh-c-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 555566666777777666666654 2 2224444555577777777777777777777765 34444467777777777
Q ss_pred hcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHH
Q 018924 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211 (349)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 211 (349)
+.|+.++|..-|.....-.+-+....+.+.-.+.-.|+.+.|..++......+ .-|..+-..+..+....|+++.|..+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777777774444444445566777777777777777777777776654 33555666677777777777777777
Q ss_pred HHHHH
Q 018924 212 VNHEK 216 (349)
Q Consensus 212 ~~~~~ 216 (349)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 65443
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.1e-07 Score=80.85 Aligned_cols=220 Identities=12% Similarity=0.092 Sum_probs=158.6
Q ss_pred HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH
Q 018924 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137 (349)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (349)
+.+.|++.+|.-.|+... ..++ -+...|.-|.......++-..|+..+++..+ ..|+...+.-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAV-kqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAV-KQDP-QHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHH-hhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHH
Confidence 457788888888888877 5454 6778888888888888888889999988887 46666678888888888888888
Q ss_pred HHHHHHHHHHhhccCCh---------hhHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCCcchHHHHHHHHHhcCcHHH
Q 018924 138 DVLRIWELYKKAVKVLN---------NGYRNVISSLLKLDDLESAEKIFEEWE-SQALCYDTRIPNFLIDVYCRNGLLEK 207 (349)
Q Consensus 138 ~a~~~~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 207 (349)
.|++.++.....-+|-. ..-.. .............++|-++. ..+..+|..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 88888882222111100 00000 11122223344555555544 44444777788888888889999999
Q ss_pred HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHH
Q 018924 208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENF 286 (349)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~ 286 (349)
|...|+..+...+. |...||.|...++...+.++|+..|++++ .++|+- .....|.-+|...|.+++|...
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rAL-------qLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRAL-------QLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHH-------hcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999998886554 67789999999999999999999999998 557863 4455666678889999998877
Q ss_pred HHHHh
Q 018924 287 IELLN 291 (349)
Q Consensus 287 ~~~~~ 291 (349)
|-.+.
T Consensus 521 lL~AL 525 (579)
T KOG1125|consen 521 LLEAL 525 (579)
T ss_pred HHHHH
Confidence 65443
No 86
>PF12854 PPR_1: PPR repeat
Probab=98.94 E-value=1.4e-09 Score=56.94 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=20.1
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 018924 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKS 110 (349)
Q Consensus 79 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 110 (349)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-05 Score=71.08 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=88.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHH
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDY 273 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~ 273 (349)
....+.+.+..++|...+.+.....+ .....|......+...|++++|.+.|.... .+.|+ .....++..+
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al-------~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVAL-------ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-------hcCCCCcHHHHHHHHH
Confidence 33444555555666555555544321 233445555556667788889999888887 56775 4667788888
Q ss_pred HHhcCChhhHHH--HHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924 274 FKDEGDIGGAEN--FIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN 324 (349)
Q Consensus 274 ~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~ 324 (349)
+.+.|+..-|.. ++..+.+.++.+...|..+. .+-+.| +.|.+.|....+.
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 899998887777 99999999999999999999 888888 8888988887654
No 88
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=1.5e-07 Score=82.19 Aligned_cols=219 Identities=12% Similarity=0.116 Sum_probs=170.4
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHH
Q 018924 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR 158 (349)
Q Consensus 79 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (349)
..+|-+..-..+...+...|-...|..+|+++ ..|...+.+|...|+..+|..+...... -+||...|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHH
Confidence 34555666667888999999999999999885 5788889999999999999988883333 678889999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924 159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238 (349)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 238 (349)
.+.+......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.++ .-..+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHh
Confidence 9888887777788888888764332 111122223347889999998887776443 25667888888888889
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cch
Q 018924 239 QIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSN 314 (349)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a 314 (349)
++..|.+.|.... ...|| ...|+.+-.+|.+.|+-.+|...+++..+.+..+...|.+.+ ...+-| ++|
T Consensus 534 k~q~av~aF~rcv-------tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 534 KEQAAVKAFHRCV-------TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hhHHHHHHHHHHh-------hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 9999999999988 44674 577999999999999999999999999888777777888888 777877 888
Q ss_pred HHHHHHHHh
Q 018924 315 LETLRELYG 323 (349)
Q Consensus 315 ~~~~~~m~~ 323 (349)
++.+.++..
T Consensus 607 ~~A~~rll~ 615 (777)
T KOG1128|consen 607 IKAYHRLLD 615 (777)
T ss_pred HHHHHHHHH
Confidence 888887754
No 89
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=5.2e-07 Score=78.92 Aligned_cols=223 Identities=14% Similarity=0.083 Sum_probs=172.2
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH
Q 018924 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA 88 (349)
Q Consensus 9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 88 (349)
.+|--..=..+...+.+.|-...|+.+|++.. .|..++.+|...|+-.+|..+..+.. + -+|+...|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHH
Confidence 34444444556777888999999999998764 45668889999999999999888877 4 348888888
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD 168 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 168 (349)
.+.+.....--+++|.++++....+ +-..+.....+.+++.++.+.|+....-.+.-..+|-....+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 8888888888888888888775432 22223333345789999999998333333445567888888888999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248 (349)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 248 (349)
++..|.+.|..-.... +.+...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+......|.+++|.+.+.
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999998877643 34567799999999999999999999999998773 366678888888889999999999999
Q ss_pred HHHHH
Q 018924 249 KVLAA 253 (349)
Q Consensus 249 ~~~~~ 253 (349)
++...
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 98865
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.91 E-value=5.7e-06 Score=66.38 Aligned_cols=295 Identities=12% Similarity=0.040 Sum_probs=203.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH-
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT---RLSAYADASDHEGIDKILTMMEADPNVALDWVIY- 87 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 87 (349)
++.-.--|...+...|++..|+.-|....+. |+..|.+ -...|...|+-..|+.-+.+.. ..+||-..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~AR 109 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHH
Confidence 4444555677778888999999999888764 3334443 3456778888888887777776 455765442
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-hhh------------HHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSA------------YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN 154 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (349)
-.-...+.+.|.+++|..-|+...+..+.... ..+ ....+..+...|+...|+........-.+.|.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda 189 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA 189 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence 23456788999999999999999876432111 011 22334456678999999999986666667778
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh----HHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS----WYYL 230 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l 230 (349)
..|..-..+|...|++..|+.-++...+.. ..++..+..+-..+...|+.+.+....++..+.+ ||... |..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHH
Confidence 888889999999999999998888777654 4456666678888899999999999999998844 55432 2111
Q ss_pred ---------HHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018924 231 ---------ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-----VESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296 (349)
Q Consensus 231 ---------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 296 (349)
+......++|.++++-.+..++. .|. ...+..+-.++...|++.+|.+.-.+.....+.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~-------ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-------EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-------CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 12235567788888777777754 343 233455566777888999999988888887777
Q ss_pred CchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 297 PTDLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 297 ~~~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
+..++.--. +|.-.. +.|+.-|+...+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666665555 554433 555555554443
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.91 E-value=1.9e-05 Score=68.59 Aligned_cols=168 Identities=10% Similarity=0.029 Sum_probs=85.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-----------
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYD---TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE----------- 221 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 221 (349)
.|..+...|-..|+.+.|..+|++..+...+.- ..+|-.....-.+..+++.|.++.++.....-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 355666666677777777777776665332211 123333334444455666666666554421100
Q ss_pred ------cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 222 ------IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 222 ------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
.+...|...+..--..|-++....+|+++++. .+.- +........-+-...-++++.+++++-....+
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-----riaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-----RIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----hcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 01223444455445556677777777777655 3221 11111111112233445666666665555433
Q ss_pred -CCc-hhHHHHh--hhhhcC----cchHHHHHHHHhCCCCCCc
Q 018924 296 -IPT-DLQDKLL--DNVQNG----KSNLETLRELYGNSLAGNE 330 (349)
Q Consensus 296 -~~~-~~~~~l~--~~~~~g----~~a~~~~~~m~~~~~~p~~ 330 (349)
|+. ..|+..+ ...+.| +.|.++|++..+ |+.|..
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 332 3566666 333444 678888888877 666654
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.90 E-value=7.2e-06 Score=71.06 Aligned_cols=307 Identities=12% Similarity=0.072 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG 93 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 93 (349)
..|..++. +.+.+++...+++.+.+.+. .+-...|.....-.+...|+-++|....+.-. +.++ -+.++|..+.-.
T Consensus 9 ~lF~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~gl-r~d~-~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGL-RNDL-KSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHh-ccCc-ccchhHHHHHHH
Confidence 33455555 45678899999999888874 33344566665556778899999999998877 6565 778899999888
Q ss_pred HhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 173 (349)
+-...++++|++.|..... +.|+....|.-+.-.-...|+++.............+.....|..++.++.-.|+...|
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999887 46666578887777777888888877776643344444456688888888899999999
Q ss_pred HHHHHHHHhcC-CCCCcchHHHHHH------HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924 174 EKIFEEWESQA-LCYDTRIPNFLID------VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246 (349)
Q Consensus 174 ~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 246 (349)
..++++..+.. -.|+...+.-... .....|.++.|.+.+..-...- .-....-..-...+.+.+++++|..+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 99999988754 2456655543332 2345788888888776554321 11222233445667889999999999
Q ss_pred HHHHHHHhcccccCCCCHHHHHHHHH-HHHh-cCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHH
Q 018924 247 MKKVLAAYQTLVKWKPSVESLAACLD-YFKD-EGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRE 320 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~p~~~~~~~ll~-~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~ 320 (349)
+...+.. .||..-|.-.+. ++.+ .+..+....+|....+..+ ....-..+- .+.... +..-..+..
T Consensus 242 y~~Ll~r-------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~-r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 242 YRRLLER-------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP-RHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred HHHHHhh-------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc-ccccchhccHHHhCcchhHHHHHHHHHH
Confidence 9999954 787666555444 4433 3333333466666665533 111111111 111112 455566777
Q ss_pred HHhCCCCCCcccccC
Q 018924 321 LYGNSLAGNEETLSG 335 (349)
Q Consensus 321 m~~~~~~p~~~t~~~ 335 (349)
+.++|+.+-...+.+
T Consensus 314 ~l~Kg~p~vf~dl~S 328 (700)
T KOG1156|consen 314 LLSKGVPSVFKDLRS 328 (700)
T ss_pred HhhcCCCchhhhhHH
Confidence 777777654444433
No 93
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=3.1e-06 Score=69.98 Aligned_cols=209 Identities=10% Similarity=-0.077 Sum_probs=136.1
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC-CHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG-KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD 168 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 168 (349)
+-..+...+..++|+.+..++++. .|+...+|+.-..++...| ++++++..++......+-+..+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 333444556677777777777763 4444456766666666666 5677777777444444444455665544455555
Q ss_pred CH--HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC---CC----
Q 018924 169 DL--ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN---SQ---- 239 (349)
Q Consensus 169 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~---- 239 (349)
+. +.+..+++.+.+.. +-|..+|+....++...|+++++.+.++++.+.++. |...|+.....+.+. |.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 42 56777777777764 456777877777778888888888888888887765 566676665555443 22
Q ss_pred HHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhh
Q 018924 240 IHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKD----EGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQ 309 (349)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~ 309 (349)
.++++++..+++.. .| |...|+.+...+.. .++..+|..++.+.....+.+......++ .|+.
T Consensus 199 ~e~el~y~~~aI~~-------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILA-------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHh-------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 24677777777743 55 55667666666665 24456688888777766666677777777 7765
No 94
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=7.9e-06 Score=67.61 Aligned_cols=216 Identities=13% Similarity=0.007 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS-DHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
.+++.+-..+...++.++|+.+..++++.+.. +..+|+..-.++...| ++++++..++++. ..+. .+..+|+....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i-~~np-knyqaW~~R~~ 114 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVA-EDNP-KNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHH-HHCC-cchHHhHHHHH
Confidence 34555556667788999999999999986432 4446776666777777 6799999999987 5444 45556765555
Q ss_pred HHhhcCcH--HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc---
Q 018924 93 GYGKVGLL--DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL--- 167 (349)
Q Consensus 93 ~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 167 (349)
.+.+.|+. +++..+++++.+. .|....+|+-...++...|+++++++.++......+-+...|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 55666653 6788888888874 4444479999999999999999999999944444455666777766665554
Q ss_pred CCH----HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc----CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924 168 DDL----ESAEKIFEEWESQALCYDTRIPNFLIDVYCRN----GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236 (349)
Q Consensus 168 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 236 (349)
|.. +.......++.+.. +-|...|+-+...+... ++..+|...+.+..+.++. +......|+..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 222 45667776776654 55677888787777763 3456688888777665433 56667777777765
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=9.8e-07 Score=70.51 Aligned_cols=190 Identities=14% Similarity=0.054 Sum_probs=123.3
Q ss_pred ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC-cchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChh---hH
Q 018924 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA-KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN---GY 157 (349)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 157 (349)
.....+..+...+...|++++|...|+++....+.. ....++..+..++...|++++|...++......+.+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 456667778888999999999999999887753321 11136677888889999999999999843333332332 35
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHH
Q 018924 158 RNVISSLLKL--------DDLESAEKIFEEWESQALCYDT-RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228 (349)
Q Consensus 158 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 228 (349)
..+..++... |+++.|.+.++.+.+.. |+. ..+..+... . .... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~---~~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-D---YLRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-H---HHHH------HHH--------HHHH
Confidence 5555555544 67778888888877653 332 222221111 0 0000 000 0112
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924 229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 294 (349)
.+...+.+.|++++|...++...+.++ +-......+..+..++.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455678889999999999999986511 011235678888899999999999999988887653
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=1.3e-06 Score=69.75 Aligned_cols=188 Identities=11% Similarity=-0.028 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC-Cc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-hhhH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNV-AL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSAY 123 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 123 (349)
....+..+...+...|+++.|...++++. .... .| ...++..+..++...|++++|...++++.+..+..+. ..++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALE-SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34456666677777888888888887776 3221 11 1235566777778888888888888887764332221 0134
Q ss_pred HHHHHHHhhc--------CCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 018924 124 NVILTLYGKY--------GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195 (349)
Q Consensus 124 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (349)
..+..++... |++++|.+.|+......+-+...+..+..... . ..... .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~------~~~~~--------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----L------RNRLA--------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----H------HHHHH--------HHHHHH
Confidence 4455555543 66777777777333333322222222211100 0 00000 011235
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCcc-c-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 196 IDVYCRNGLLEKAENLVNHEKLKGRE-I-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 196 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
...|.+.|++++|...++...+..+. | ....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55677777777777777777764321 1 2456677777777777777777777766543
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=5.2e-06 Score=77.88 Aligned_cols=231 Identities=10% Similarity=0.050 Sum_probs=176.5
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHH
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYD---RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWV 85 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 85 (349)
|-+...|-.-|..+.+.++.++|.+++++.+.. +++-. ...|.++++.-..-|.-+...++|++.. +.. -...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc-qyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC-QYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH-Hhc--chHH
Confidence 335677999999999999999999999999864 22211 2467777777777788888999999998 322 3345
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccC--ChhhHHHHHHH
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVISS 163 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~ 163 (349)
+|..|...|.+.+.+++|.++|+.|.+.-- -.. .+|...+..+.+.++-+.|..++.....-.+- ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~-~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTR-KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chh-hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 678999999999999999999999998633 333 79999999999999999999999933333332 22334455555
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch--hhHHHHHHHHhcCCCHH
Q 018924 164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV--KSWYYLATGYRQNSQIH 241 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~ 241 (349)
-.+.|+.+.+..+|+...... +--...|+.+++.-.+.|+.+.++.+|++....++.|-- ..|...+..--.+|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 678999999999999988764 445678999999999999999999999999998776542 34555555555566644
Q ss_pred HHHHH
Q 018924 242 KAVEA 246 (349)
Q Consensus 242 ~a~~~ 246 (349)
.+..+
T Consensus 1689 ~vE~V 1693 (1710)
T KOG1070|consen 1689 NVEYV 1693 (1710)
T ss_pred hHHHH
Confidence 44433
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=2e-06 Score=66.38 Aligned_cols=156 Identities=12% Similarity=-0.016 Sum_probs=83.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 018924 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203 (349)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 203 (349)
..+-..+...|+-+....+........+-|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3444455555555555555442222333333344445555556666666666666655543 555566666666666666
Q ss_pred cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH
Q 018924 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283 (349)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 283 (349)
+.+.|..-|.+..+..+. ++..++.+.-.+.-.|+++.|..++...... -.-|...-..+.......|++++|
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~------~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS------PAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhhcCChHHH
Confidence 666666666665553322 3444555555566666666666666665542 112444445555555566666666
Q ss_pred HHHH
Q 018924 284 ENFI 287 (349)
Q Consensus 284 ~~~~ 287 (349)
+.+.
T Consensus 222 ~~i~ 225 (257)
T COG5010 222 EDIA 225 (257)
T ss_pred Hhhc
Confidence 5554
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=2.1e-06 Score=66.12 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=71.8
Q ss_pred cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCc--HHHHH
Q 018924 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY-CRNGL--LEKAE 209 (349)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~ 209 (349)
.++.+++...++......+.+...|..+...|...|+++.|...|+...+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4444555555554444445556666666666666677777776666666643 33455555555543 45555 36777
Q ss_pred HHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
+++++..+.++. +...+..+...+...|++++|+..|+++++
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777776665543 555666666666677777777777777665
No 100
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4.8e-06 Score=64.38 Aligned_cols=259 Identities=14% Similarity=0.102 Sum_probs=143.8
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT 89 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (349)
-|+...|+ ++-+.-.|++..++..-....... -+...-.-+-++|...|.+... ...++ ... .|....+..
T Consensus 7 g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~---~~eI~-~~~-~~~lqAvr~ 77 (299)
T KOG3081|consen 7 GPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIV---ISEIK-EGK-ATPLQAVRL 77 (299)
T ss_pred CcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccc---ccccc-ccc-CChHHHHHH
Confidence 34444444 345555677777766655543331 2334444456667777765432 33343 222 344444444
Q ss_pred HHHHHhhcCcHHHHHH-HHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924 90 VGNGYGKVGLLDKALA-MLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD 168 (349)
Q Consensus 90 li~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 168 (349)
+......-++.++-.. +.+.+.......+. .....-...|+..|++++|++..+. + .+......=+..+.+..
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~-i~~l~aa~i~~~~~~~deAl~~~~~---~--~~lE~~Al~VqI~lk~~ 151 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADSTDGSNL-IDLLLAAIIYMHDGDFDEALKALHL---G--ENLEAAALNVQILLKMH 151 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhhccchhH-HHHHHhhHHhhcCCChHHHHHHHhc---c--chHHHHHHHHHHHHHHH
Confidence 4444444444444333 33444433333332 2333344567777888888777762 1 12222333334455667
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 244 (349)
+.+.|.+.++.|.+.. +..+.+-|..++.+ .+.+.+|+-+|++|.++ ..|+..+.+-...++...|++++|.
T Consensus 152 r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHH
Confidence 7777888777777632 33455555555543 45577778888877764 3467777777777777788888888
Q ss_pred HHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH-HHHHHHHhhC
Q 018924 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA-ENFIELLNDK 293 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 293 (349)
.+++.++.. -.-++.+...++-+-...|...++ .+.+..++..
T Consensus 228 ~lL~eaL~k------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 228 SLLEEALDK------DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHhc------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 888877763 233566666666666666655443 3444555544
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.6e-05 Score=61.57 Aligned_cols=247 Identities=13% Similarity=0.100 Sum_probs=165.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (349)
++-+.-.|++..++..-.... ...-.+.... -+-++|...|.+..... ++.. +-.++. .+...+......-+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~-~~~~~~e~d~--y~~raylAlg~~~~~~~---eI~~-~~~~~l-qAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFS-SSKTDVELDV--YMYRAYLALGQYQIVIS---EIKE-GKATPL-QAVRLLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhc-cccchhHHHH--HHHHHHHHccccccccc---cccc-ccCChH-HHHHHHHHHhhCcc
Confidence 445566788888776666554 2211122333 36677777787654443 3322 223333 45544444444444
Q ss_pred CHHHHH-HHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHH
Q 018924 135 KKDDVL-RIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212 (349)
Q Consensus 135 ~~~~a~-~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 212 (349)
+.+.-+ ++.+ +.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 3344 4444444444444555667899999999999887621 2233333445567788999999999
Q ss_pred HHHHHcCcccchhhHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 213 NHEKLKGREIHVKSWYYLATGYRQ----NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 213 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
++|.+-. +..+.+-|..++.+ .+.+.+|.-+|+++.+ ...|+..+.+....++...|++++|+.+++
T Consensus 161 k~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 161 KKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE------KTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc------ccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 9999842 55566666666544 5679999999999985 578999999999999999999999999999
Q ss_pred HHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHHHHhC
Q 018924 289 LLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRELYGN 324 (349)
Q Consensus 289 ~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~m~~~ 324 (349)
....+...++.+...++ +-...| +-..+.+.++...
T Consensus 232 eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 232 EALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999888888888888 666667 2345666666553
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.8e-06 Score=71.13 Aligned_cols=289 Identities=17% Similarity=0.145 Sum_probs=191.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH-HHHHHHHHHHhhcCc
Q 018924 21 KLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW-VIYATVGNGYGKVGL 99 (349)
Q Consensus 21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~ 99 (349)
.+.++.|+++.|+..|-+.+.... +|...|..-..+|+..|++++|.+=-.+-. .+.|++ ..|+-+..++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhccc
Confidence 456788999999999999988754 388889999999999999999876555544 566775 468888889999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC---------------------------------------------
Q 018924 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG--------------------------------------------- 134 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------------------------------- 134 (349)
+++|+..|.+-.+. .|+....++.+..++....
T Consensus 86 ~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999987763 4454455555555542110
Q ss_pred ------CHHHHHHHHHH------HHhh-------ccC---------Ch-------------hhHHHHHHHHhccCCHHHH
Q 018924 135 ------KKDDVLRIWEL------YKKA-------VKV---------LN-------------NGYRNVISSLLKLDDLESA 173 (349)
Q Consensus 135 ------~~~~a~~~~~~------~~~~-------~~~---------~~-------------~~~~~li~~~~~~~~~~~a 173 (349)
+...+...+.. ...+ ..| .. .-...+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 00111111100 0000 001 00 0123455555566667777
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHH-------HHHHHhcCCCHHHHHHH
Q 018924 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY-------LATGYRQNSQIHKAVEA 246 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~ 246 (349)
.+-+....+.. .++.-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+.++++.++.+
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777766643 45555677777788888887777776666655432 1222332 33456667889999999
Q ss_pred HHHHHHHhcccccCCCCHHHHH-------------------------HHHHHHHhcCChhhHHHHHHHHhhCCCCCchhH
Q 018924 247 MKKVLAAYQTLVKWKPSVESLA-------------------------ACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~p~~~~~~-------------------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 301 (349)
|.+.+.. ...|+..+=. .-...+.+.|++..|...+.++....|.+...|
T Consensus 321 ~~kaLte-----~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY 395 (539)
T KOG0548|consen 321 YQKALTE-----HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY 395 (539)
T ss_pred HHHHhhh-----hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH
Confidence 9998876 4444432211 112356788999999999999999999999999
Q ss_pred HHHh-hhhhcC--cchHHHHHHHHh
Q 018924 302 DKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 302 ~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
.... +|.+.| ..|+.-.+...+
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9998 998888 566665555544
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=1.8e-06 Score=66.52 Aligned_cols=154 Identities=15% Similarity=0.027 Sum_probs=115.9
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 206 (349)
+-.|...|+++.+....+... .|. . .+...++.+++...++...+.+ +.|...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~---~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA---DPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh---Ccc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 346778888877644433111 111 0 1223667778888888877765 667888999999999999999
Q ss_pred HHHHHHHHHHHcCcccchhhHHHHHHHH-hcCCC--HHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhh
Q 018924 207 KAENLVNHEKLKGREIHVKSWYYLATGY-RQNSQ--IHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 282 (349)
+|...|++..+..+. +...+..+..++ ...|+ .++|.+++++.++. .| +...+..+...+.+.|++++
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-------dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALAL-------DANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------CCCChhHHHHHHHHHHHcCCHHH
Confidence 999999999987654 677777777764 67677 59999999999954 56 56778888888999999999
Q ss_pred HHHHHHHHhhCCCCCchh
Q 018924 283 AENFIELLNDKGFIPTDL 300 (349)
Q Consensus 283 a~~~~~~~~~~~~~~~~~ 300 (349)
|...|+.+.+..+|+..-
T Consensus 163 Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 163 AIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhhCCCCccH
Confidence 999999999887766543
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=3.1e-06 Score=66.57 Aligned_cols=260 Identities=11% Similarity=0.040 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHH-HH
Q 018924 48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN-VI 126 (349)
Q Consensus 48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l 126 (349)
..-+.+++..+.+..+++.|++++.... +... .+....+.|..+|....++..|-..++++-.. .|.. .-|. --
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~-Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~-~qYrlY~ 84 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSEL-ERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL-EQYRLYQ 84 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHH-hcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH-HHHHHHH
Confidence 3446677777788899999999998776 4333 47788889999999999999999999999774 3333 2222 23
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH--HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS--LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 204 (349)
...+.+.+.+.+|+.+..++... |....-..-+.+ ....+++..+..++++.-.. .+..+.+.......+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecccc
Confidence 45677889999999999854433 322222222222 23567888888888776432 244455556666778999
Q ss_pred HHHHHHHHHHHHH-cCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCC-------------CCHH-----
Q 018924 205 LEKAENLVNHEKL-KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK-------------PSVE----- 265 (349)
Q Consensus 205 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------p~~~----- 265 (349)
++.|.+-|+...+ .|.. ....||..+. ..+.++++.|+++..++++. |++ ||..
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieR-----G~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIER-----GIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-----hhhcCCccCccceeccCchhcccch
Confidence 9999999998876 4555 3556765554 45678999999999999987 332 2221
Q ss_pred ---HHHHHHHH-------HHhcCChhhHHHHHHHHhhCCC--CCchhHHHHh-hhhhcC-cchHHHHHHHHhC
Q 018924 266 ---SLAACLDY-------FKDEGDIGGAENFIELLNDKGF--IPTDLQDKLL-DNVQNG-KSNLETLRELYGN 324 (349)
Q Consensus 266 ---~~~~ll~~-------~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~-~~~~~g-~~a~~~~~~m~~~ 324 (349)
.-+.++.+ +.+.|+++.|.+.+..|.-... .++.+...+. .-.... .+...-+.-+.+.
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc
Confidence 12333333 4688999999999988876532 5666666665 444443 3334444444443
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2e-05 Score=67.68 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 72 (349)
++-+...|++++|.....+++..+ +-|...+..-+-+.++.+++++|+.+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik 70 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK 70 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH
Confidence 355667778888888888877765 2244455555556667777777765443
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=1.4e-05 Score=73.97 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN 42 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 42 (349)
+...|..|+..+...+++++|.++.+...+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~ 60 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE 60 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4555666666666666666666666654443
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=9.2e-06 Score=74.08 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD-WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 125 (349)
+...+..|..+..+.|.+++|..+++... . +.|+ ......+...+.+.+++++|+..+++..+. .|+.......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~-~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIH-Q--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHH-h--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45555555555666666666666666655 2 2232 333445555666666666666666666553 3344345555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018924 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183 (349)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 183 (349)
+..++...|++++|..+|+......+.+..++..+..++...|+.++|...|+...+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666666666666322233333455555556666666666666666665543
No 108
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.3e-05 Score=64.65 Aligned_cols=210 Identities=12% Similarity=0.035 Sum_probs=126.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhccCC-hhhH-------HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc-chHH
Q 018924 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGY-------RNVISSLLKLDDLESAEKIFEEWESQALCYDT-RIPN 193 (349)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~-------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 193 (349)
...|+--|.+.++..+|..+.+ .+.|. +.-| ..+.+-.....+..-|.+.|+..-+.+..-|+ .--.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~K----dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCK----DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhhheeeecccccHHHHHHHHh----hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 3445556677778777777766 11222 2112 12222222223455666666655554443332 2234
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH-HHH
Q 018924 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA-CLD 272 (349)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~-ll~ 272 (349)
++...+.-..+++++...++.+..-=...|...+ .+..+++..|++.+|+++|-.+... .++ |..+|.+ |.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-----~ik-n~~~Y~s~LAr 436 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-----EIK-NKILYKSMLAR 436 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-----hhh-hhHHHHHHHHH
Confidence 5556666667788888888777764333333333 4778889999999999999887632 333 4555554 456
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh--hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCCChhHHHHHh
Q 018924 273 YFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL--DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEK 347 (349)
Q Consensus 273 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~ 347 (349)
+|.+.++.+.|..++-.+.. +.+..+.-.+| .+.+.+ --|-+.|+.+.. ..|++.-|.+.-|....++..+
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGACaG~f~~l 511 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGACAGLFRQL 511 (557)
T ss_pred HHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchHHHHHHHH
Confidence 78889999988877654432 23333444455 455555 556666776654 4788888888888777766554
No 109
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.72 E-value=0.00014 Score=63.37 Aligned_cols=301 Identities=12% Similarity=0.094 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG 93 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 93 (349)
.|-.-+..+.++|++......|+..+.. -+.....+|...+.-....+-++-+..++++-. + +.|. .-+-.|..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-k--~~P~--~~eeyie~ 178 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-K--VAPE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-h--cCHH--HHHHHHHH
Confidence 4555556666777888888888777654 222334577777777777788888899998877 3 3333 35667888
Q ss_pred HhhcCcHHHHHHHHHHHHHhh-----cCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc--CCh--hhHHHHHHHH
Q 018924 94 YGKVGLLDKALAMLKKSEEQI-----KGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLN--NGYRNVISSL 164 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~li~~~ 164 (349)
+++.+++++|.+.+....... ..++....|+.+.....++.+.-..+.+=.....|+. +|. ..|++|...|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 999999999999888875421 1123325787777777766554433333222223332 443 5789999999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc----------------------HHHHHHHHHHHHHcCc--
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL----------------------LEKAENLVNHEKLKGR-- 220 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~~-- 220 (349)
.+.|+++.|..+|++.... ..+..-|+.+.++|..-.. ++-....|+.+...++
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 9999999999999998764 2334445555555543221 2223333333332211
Q ss_pred ---------ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC------HHHHHHHHHHHHhcCChhhHHH
Q 018924 221 ---------EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS------VESLAACLDYFKDEGDIGGAEN 285 (349)
Q Consensus 221 ---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~------~~~~~~ll~~~~~~g~~~~a~~ 285 (349)
.-++..|..-+. +..|+..+-...|.+++. .+.|. ...|..+.+.|...|+++.|+.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~------~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK------TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH------ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 012333433333 235678888889999887 45553 3568888889999999999999
Q ss_pred HHHHHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHHHHhCCCCCCc
Q 018924 286 FIELLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRELYGNSLAGNE 330 (349)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~m~~~~~~p~~ 330 (349)
+|+.......+...-...+. .++... +.....++-|.+.-..|..
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 99999887666654444444 444333 3333333344444445555
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=1.5e-05 Score=72.66 Aligned_cols=131 Identities=15% Similarity=0.019 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS 163 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 163 (349)
...+-.|.....+.|..++|+.+++...+ ..|+...++..++..+.+.+++++|+..++......+-+......+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 44444445555555555555555555544 2344434444455555555555555555543333333333344444444
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
+.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555554421 22234444444445555555555555554443
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=5.9e-05 Score=72.81 Aligned_cols=275 Identities=10% Similarity=-0.018 Sum_probs=176.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhc---CCCC-CccHHHHHHH
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDR----YTYCTRLSAYADASDHEGIDKILTMMEA---DPNV-ALDWVIYATV 90 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~l 90 (349)
+...+...|++++|...+++....-...+. ...+.+...+...|++++|...+++... ..+. .....++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 334566899999999999998763211121 2445566667789999999998887651 1121 1122344567
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcC---Cc---chhhHHHHHHHHhhcCCHHHHHHHHHHH-H--hhccCC--hhhHHH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKG---AK---VNSAYNVILTLYGKYGKKDDVLRIWELY-K--KAVKVL--NNGYRN 159 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~--~~~~~~--~~~~~~ 159 (349)
...+...|++++|...+++....... +. ....+..+...+...|++++|...++.. . ....+. ...+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 77888999999999999887653111 11 1123455666778889999999988821 1 111121 234455
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCC-cchH-----HHHHHHHHhcCcHHHHHHHHHHHHHcCcccc---hhhHHHH
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQALCYD-TRIP-----NFLIDVYCRNGLLEKAENLVNHEKLKGREIH---VKSWYYL 230 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 230 (349)
+...+...|+++.|...++.......... ...+ ...+..+...|+.+.|..++........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 66777889999999999988764211111 1111 1122445568899999999877554221111 1113456
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924 231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 231 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 294 (349)
..++...|++++|...+.++.... ...+..+ ...+...+..++.+.|+.++|...+.+.....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~-~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENA-RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 677888999999999999987641 1112222 23456666677889999999999999887764
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4.7e-06 Score=67.13 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 018924 101 DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180 (349)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 180 (349)
.-|.+.|+-.-+++.+.++..-..++.+.+.-..++++++-.++....-+..|...--.+.++++..|++.+|+++|-.+
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 33444444443333333332334445555555555555555555222222222222233455555555555555555444
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh-HHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS-WYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
....++.+..-...|.++|.++++++.|+.++-.+... .+..+ ...+..-|.+.+.+--|.+.|+.+.
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33222222222234445555555555555544333221 11111 2222334555555555555555554
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00016 Score=62.39 Aligned_cols=150 Identities=10% Similarity=0.021 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHH--------HHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN--------HEKLKGREIHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~~~~~ 241 (349)
+..+.+++...-+....-...+.-.++......|+++.|.+++. .+.+.+..| .+...+...+.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCc
Confidence 44455555444433211122344445566677889999988888 555544443 34455666677777777
Q ss_pred HHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHHH
Q 018924 242 KAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLETL 318 (349)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~~ 318 (349)
.|..++.+++..+.......+.. .++.-+...-.+.|+.++|..+++++.+..+++..+...++ +|++-. +.|..+-
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~ 514 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLS 514 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHh
Confidence 77777777776532221212211 12222222335679999999999999998899999999999 999988 7777765
Q ss_pred HHH
Q 018924 319 REL 321 (349)
Q Consensus 319 ~~m 321 (349)
+.+
T Consensus 515 k~L 517 (652)
T KOG2376|consen 515 KKL 517 (652)
T ss_pred hcC
Confidence 544
No 114
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.68 E-value=5.3e-05 Score=67.20 Aligned_cols=255 Identities=15% Similarity=0.017 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 018924 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109 (349)
Q Consensus 30 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 109 (349)
.++++.+++..+.+.. |+.....+.--|+..++++.|.+..++.. +.+...+...|..|.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL-~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREAL-ALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4566777777665432 33322233334667778888888887777 555556777777777777788888888877766
Q ss_pred HHHhhcC---------------Ccch---hhHHHHHHHHh-----------------------hcCCHHHHHHHHH----
Q 018924 110 SEEQIKG---------------AKVN---SAYNVILTLYG-----------------------KYGKKDDVLRIWE---- 144 (349)
Q Consensus 110 ~~~~~~~---------------~~~~---~~~~~l~~~~~-----------------------~~~~~~~a~~~~~---- 144 (349)
....-.. .+.. .+...++...- ..++..++.+..+
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 6543111 0000 01111111110 0011111111111
Q ss_pred -----HHHhh---------ccCCh--------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924 145 -----LYKKA---------VKVLN--------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202 (349)
Q Consensus 145 -----~~~~~---------~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 202 (349)
....+ ..|+. ..|......+.+.++.++|...+.+..+.. +.....|......+...
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHH
Confidence 00000 00111 124456667778888888988888877653 45566777777888889
Q ss_pred CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHH--HHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCC
Q 018924 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE--AMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGD 279 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~ 279 (349)
|..++|.+.|......++. ++.+..++...+.+.|+..-|.. ++..+++ +.| +...|..+...+-+.|+
T Consensus 698 ~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr-------~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR-------LDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHccc
Confidence 9999999999998886543 56788899999999998887877 9999984 466 78899999999999999
Q ss_pred hhhHHHHHHHHhhCCC
Q 018924 280 IGGAENFIELLNDKGF 295 (349)
Q Consensus 280 ~~~a~~~~~~~~~~~~ 295 (349)
.+.|-+.|........
T Consensus 770 ~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 770 SKQAAECFQAALQLEE 785 (799)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 9999999998877644
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=3.8e-06 Score=61.19 Aligned_cols=88 Identities=7% Similarity=-0.053 Sum_probs=44.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924 53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132 (349)
Q Consensus 53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (349)
.+..++...|++++|...|+... ..+. .+...|..+..++...|++++|...|++.... .|+...++..+..++..
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLV-MAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence 34444455555555555555554 3222 34444555555555555555555555555542 23332455555555555
Q ss_pred cCCHHHHHHHHH
Q 018924 133 YGKKDDVLRIWE 144 (349)
Q Consensus 133 ~~~~~~a~~~~~ 144 (349)
.|++++|+..|+
T Consensus 105 ~g~~~eAi~~~~ 116 (144)
T PRK15359 105 MGEPGLAREAFQ 116 (144)
T ss_pred cCCHHHHHHHHH
Confidence 555555555555
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=1.8e-06 Score=62.86 Aligned_cols=113 Identities=4% Similarity=-0.136 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
++..+..+...+.+.|++++|...|+....... .+...|..+..++.+.|++++|...|++.. ..+. .+...+..+.
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~l~p-~~~~a~~~lg 99 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHAL-MLDA-SHPEPVYQTG 99 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCC-CCcHHHHHHH
Confidence 344466678889999999999999999998753 377799999999999999999999999998 6454 6778888999
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (349)
.++...|+.++|...|+...+. .|+.+..|.....+
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~~ 135 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQNA 135 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 9999999999999999999874 45553455444433
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=0.00013 Score=70.50 Aligned_cols=302 Identities=13% Similarity=0.035 Sum_probs=185.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--C----CCCH--HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc----HH
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENG--I----TYDR--YTYCTRLSAYADASDHEGIDKILTMMEADPNVALD----WV 85 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~--~----~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 85 (349)
.....+...|+++++...+......- . .|.. .....+...+...|++++|...+++.. ......+ ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~ 492 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELAL-AELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCccHHHHHH
Confidence 34445567899999999988875431 1 1111 122223345567899999999998876 3111112 23
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC----cchhhHHHHHHHHhhcCCHHHHHHHHHH-HH----hhcc--C-C
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGA----KVNSAYNVILTLYGKYGKKDDVLRIWEL-YK----KAVK--V-L 153 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~----~~~~--~-~ 153 (349)
..+.+...+...|++++|...+++........ ....++..+...+...|+++.|...++. .. .+.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 44566777888999999999998886532211 1113455667778889999999998872 11 1111 1 1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCC--CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc-chhhH-
Q 018924 154 NNGYRNVISSLLKLDDLESAEKIFEEWESQA--LCY--DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI-HVKSW- 227 (349)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~- 227 (349)
...+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+++.|...+.......... ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2234455666778899999999988876421 111 12334446667788999999999988875421110 11111
Q ss_pred ----HHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC
Q 018924 228 ----YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS---VESLAACLDYFKDEGDIGGAENFIELLNDK----GFI 296 (349)
Q Consensus 228 ----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~ 296 (349)
...+..+...|+.+.|.+++...... ..... ...+..+..++...|+.++|...++.+... +.+
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~ 727 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKP-----EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM 727 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-----CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch
Confidence 11224445588999999887775421 11111 112345666788999999999999887653 222
Q ss_pred C--chhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924 297 P--TDLQDKLL-DNVQNG--KSNLETLRELYGNS 325 (349)
Q Consensus 297 ~--~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~ 325 (349)
. ..+...+. ++.+.| ++|...+.+..+..
T Consensus 728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1 12344444 777888 78888888876653
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=0.00016 Score=61.07 Aligned_cols=147 Identities=15% Similarity=0.065 Sum_probs=95.8
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHH
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD-TRIPNFLIDVYC 200 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 200 (349)
.+--....+...|++++|+..++......+-|..........+.+.++.++|.+.++.+... .|+ ....-.+..+|.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 44444555566777777777777433444444455555667777777777777777777764 343 445556777777
Q ss_pred hcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCCh
Q 018924 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI 280 (349)
Q Consensus 201 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 280 (349)
+.|++.+|..++++.....+. |+..|..|..+|...|+..++.....+ .+...|++
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE-----------------------~~~~~G~~ 441 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE-----------------------GYALAGRL 441 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH-----------------------HHHhCCCH
Confidence 777777777777777765543 677777777777777776666544333 34456777
Q ss_pred hhHHHHHHHHhhCC
Q 018924 281 GGAENFIELLNDKG 294 (349)
Q Consensus 281 ~~a~~~~~~~~~~~ 294 (349)
+.|...+....+..
T Consensus 442 ~~A~~~l~~A~~~~ 455 (484)
T COG4783 442 EQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777776666653
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.9e-05 Score=70.95 Aligned_cols=210 Identities=16% Similarity=0.177 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc-CChhhHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISS 163 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~ 163 (349)
..|..+..+-.+.|.+.+|++-|-+. .++ ..|...+....+.|.|++-.+++.|.....+ |.. =+.+|-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDp-s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDP-SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCc-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 45666777777777777666655432 122 5677777777777777777777775444433 333 2466667
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924 164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 243 (349)
|++.++..+.++++ ..||......+.+-|...|.++.|.-+|. ++.-|..|...+...|.+..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHH
Confidence 77777666555444 24555555555555555555555555553 233344555555555555555
Q ss_pred HHHHHHHHHH-------------------hcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHH
Q 018924 244 VEAMKKVLAA-------------------YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKL 304 (349)
Q Consensus 244 ~~~~~~~~~~-------------------~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 304 (349)
.+.-+++-.. ......+-....-..-++..|-..|-+++...+++.........-..|.-+
T Consensus 1240 VD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1240 VDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred HHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 4443332211 000002222344456666677777777777777665554433444456667
Q ss_pred h-hhhhcC-cchHHHHH
Q 018924 305 L-DNVQNG-KSNLETLR 319 (349)
Q Consensus 305 ~-~~~~~g-~~a~~~~~ 319 (349)
. .|.+-. ++.++.++
T Consensus 1320 aiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1320 AILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred HHHHHhcCHHHHHHHHH
Confidence 6 777766 54444443
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=5.5e-05 Score=63.76 Aligned_cols=110 Identities=16% Similarity=0.063 Sum_probs=49.1
Q ss_pred hcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924 60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139 (349)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (349)
..|+++.|+..++.+. . ..+-|..-+......+.+.++..+|.+.++.+... .|+....+-.+..++.+.|++.+|
T Consensus 318 ~~~~~d~A~~~l~~L~-~-~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 318 LAGQYDEALKLLQPLI-A-AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HhcccchHHHHHHHHH-H-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 4444555555555444 1 11122222233344455555555555555554442 233223444444555555555555
Q ss_pred HHHHHHHHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924 140 LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173 (349)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 173 (349)
+.+++......+.|+..|..+.++|...|+..++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 5555433344444444455555555555544443
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=9.9e-05 Score=56.95 Aligned_cols=159 Identities=14% Similarity=0.057 Sum_probs=70.6
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD 168 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 168 (349)
.++-+....|+.+.|...++++...- |.+..+-..-...+-..|.+++|+++++......+.|..++---+...-..|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 34444444555555555555554432 2221222222222333455555555555333333444444444444444444
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC---CHHHHHH
Q 018924 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS---QIHKAVE 245 (349)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~ 245 (349)
+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..+. ++..+..+...+...| +.+.+.+
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444444444433 3445555555555555555555555555555543221 2333333333332222 3444555
Q ss_pred HHHHHH
Q 018924 246 AMKKVL 251 (349)
Q Consensus 246 ~~~~~~ 251 (349)
+|.+.+
T Consensus 213 yy~~al 218 (289)
T KOG3060|consen 213 YYERAL 218 (289)
T ss_pred HHHHHH
Confidence 555555
No 122
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.56 E-value=1.4e-07 Score=50.15 Aligned_cols=34 Identities=35% Similarity=0.493 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDR 48 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 48 (349)
+||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999873
No 123
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.55 E-value=1.5e-07 Score=49.63 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITY 46 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 46 (349)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999998888877
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.00015 Score=55.92 Aligned_cols=190 Identities=15% Similarity=0.078 Sum_probs=142.6
Q ss_pred cCChhHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH
Q 018924 26 TGNFEKLDSLMHEMEEN---G-ITYDRY-TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL 100 (349)
Q Consensus 26 ~g~~~~a~~~~~~m~~~---~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 100 (349)
..+.++.++++.+++.. | ..|+.. .|..++-+....|+.+.|..+++++..+. +-+..+-..-.-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 46788999999988753 4 555655 56667777788999999999999987332 23333322223335567999
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 018924 101 DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180 (349)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 180 (349)
++|+++++.+.+.. |+...++---+...-..|+.-+|++-+......+..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999864 4443677777777777888889998888777888999999999999999999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhcC---cHHHHHHHHHHHHHcCc
Q 018924 181 ESQALCYDTRIPNFLIDVYCRNG---LLEKAENLVNHEKLKGR 220 (349)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~ 220 (349)
.-.. |.+...+..+...+.-.| +++.|.+.|.+..+...
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 8753 445555556666655444 56788999998888543
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=6.3e-06 Score=59.55 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=36.3
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924 162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 241 (349)
..+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...++...+.++. +...+..+...+...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCCHH
Confidence 33344444444444444443332 223333444444444444444444444444333211 2333333444444444444
Q ss_pred HHHHHHHHHH
Q 018924 242 KAVEAMKKVL 251 (349)
Q Consensus 242 ~a~~~~~~~~ 251 (349)
+|...|+...
T Consensus 103 ~A~~~~~~al 112 (135)
T TIGR02552 103 SALKALDLAI 112 (135)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=1.4e-05 Score=57.71 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK 166 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (349)
...+...+...|++++|.+.|+.....+ |+....|..+...+...|++++|...++......+.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3344445555555555555555554432 22224455555555555555555555553222233333444444445555
Q ss_pred cCCHHHHHHHHHHHHh
Q 018924 167 LDDLESAEKIFEEWES 182 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~ 182 (349)
.|+++.|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.47 E-value=0.00042 Score=56.04 Aligned_cols=296 Identities=15% Similarity=0.063 Sum_probs=197.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc--cHHH----------H
Q 018924 21 KLYYKTGNFEKLDSLMHEMEENGITYDRYT-YCTRLSAYADASDHEGIDKILTMMEADPNVAL--DWVI----------Y 87 (349)
Q Consensus 21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~----------~ 87 (349)
..|...|+..-|+.=+...++. +||-.. -..-...+.+.|.+++|..-|+... ...... ...+ +
T Consensus 80 T~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl-~~~~s~~~~~eaqskl~~~~e~~ 156 (504)
T KOG0624|consen 80 TVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVL-QHEPSNGLVLEAQSKLALIQEHW 156 (504)
T ss_pred HHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHH-hcCCCcchhHHHHHHHHhHHHHH
Confidence 4677778888888888887764 666432 2223446778999999999999987 433211 1111 1
Q ss_pred --HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHh
Q 018924 88 --ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL 165 (349)
Q Consensus 88 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (349)
...+..+.-.|+...|+.....+.+.. .-+. ..|..-..+|...|++..|+.=++....-...+..++.-+-..+.
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda-~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA-SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh-HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 233455667889999999999998742 2344 678888899999999999988777444444455566777777888
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCcchH----HHH---H------HHHHhcCcHHHHHHHHHHHHHcCcccchh---hHHH
Q 018924 166 KLDDLESAEKIFEEWESQALCYDTRIP----NFL---I------DVYCRNGLLEKAENLVNHEKLKGREIHVK---SWYY 229 (349)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l---~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 229 (349)
..|+.+.++..+++-++. .||...+ ..| . ......+++-++.+-.+...+..+..... .+..
T Consensus 235 ~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 999999999999988874 4554322 111 1 11234566777777777777655432222 3445
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch---------
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD--------- 299 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------- 299 (349)
+-.++...+++.+|++...+++ .+.|+ ..++.--..+|.-..+++.|..-|+...+.+..+..
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL-------~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVL-------DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAK 385 (504)
T ss_pred eeecccccCCHHHHHHHHHHHH-------hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 5667778899999999999998 55775 777777777888788888888888777766543322
Q ss_pred ---------hHHHHhhhhhcC--cchHHHHHHHHhCCCCCCcc
Q 018924 300 ---------LQDKLLDNVQNG--KSNLETLRELYGNSLAGNEE 331 (349)
Q Consensus 300 ---------~~~~l~~~~~~g--~~a~~~~~~m~~~~~~p~~~ 331 (349)
-|..+++.-++. .+..+.|++|.++ ..||..
T Consensus 386 rlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqk-WHPDNF 427 (504)
T KOG0624|consen 386 RLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQK-WHPDNF 427 (504)
T ss_pred HHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHh-cCCccc
Confidence 233333222222 6777778887664 566654
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.00066 Score=58.24 Aligned_cols=64 Identities=6% Similarity=0.119 Sum_probs=51.0
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
+-|+.+|+.||+-+-.. .++++.+.++++... ++-....|..-+..-.+..+++...++|.+..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34899999999977655 999999999999864 33355688888888888888888888887754
No 129
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=5.6e-05 Score=67.72 Aligned_cols=211 Identities=14% Similarity=0.168 Sum_probs=133.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GI--------TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL 82 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~--------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 82 (349)
+...|..+.+.|.+..+.+-|.-.+..|... |. .|+ .+=..+.-.....|.+++|..+|++-+ +.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck-R~---- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK-RY---- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH-HH----
Confidence 5677888888888888888887777776532 11 121 222223333456788888888888877 42
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHH-----------HHhh--
Q 018924 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWEL-----------YKKA-- 149 (349)
Q Consensus 83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----------~~~~-- 149 (349)
..|=..|-..|.+++|.++-+.--. +... .+|.....-+-..+|.+.|++.|+. ....
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DR--iHLr--~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~ 900 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDR--IHLR--NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK 900 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccc--eehh--hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH
Confidence 2355667778888888887654221 2222 3666666777777788888777751 1110
Q ss_pred -------ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924 150 -------VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222 (349)
Q Consensus 150 -------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 222 (349)
-..|...|.-.....-..|+.+.|+.+|..... |-++++..|-.|+.++|-++-++-.
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------ 965 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------ 965 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------
Confidence 012334455555555667777777777765543 4456666677777777777654322
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
|....-.+...|-..|++.+|..+|.++..
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 444555677888888888888888877653
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0014 Score=60.63 Aligned_cols=240 Identities=13% Similarity=0.075 Sum_probs=154.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENG--ITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT 89 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (349)
|+..-...+.++...+-+.+-+++++++.-.+ +.-+...-|.|+-...+ -+..+..+..+++. ..+. |+.
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLd-nyDa-~~i----- 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLD-NYDA-PDI----- 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhc-cCCc-hhH-----
Confidence 55556677888888888899999998886542 12222333444443333 34455666666666 4443 332
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHh--------------------hcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQ--------------------IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA 149 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (349)
.......+-+++|..+|++.... ....+.+.+|+.+..+-.+.|...+|++-|-.
T Consensus 1055 -a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---- 1129 (1666)
T KOG0985|consen 1055 -AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---- 1129 (1666)
T ss_pred -HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh----
Confidence 23334444455555555442100 00122225788888888888888888876641
Q ss_pred ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHH
Q 018924 150 VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229 (349)
Q Consensus 150 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 229 (349)
..|+..|..+++.+.+.|.+++-.+++...++..-.|.+ -+.|+-+|++.+++.+.++++ ..||......
T Consensus 1130 -adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1130 -ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQ 1199 (1666)
T ss_pred -cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHH
Confidence 145667899999999999999999988887776555554 456888999999887766654 2377777778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
+..-|...|.++.|.-+|..... |..|...+...|+++.|...-+
T Consensus 1200 vGdrcf~~~~y~aAkl~y~~vSN--------------~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSNVSN--------------FAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888777766532 3445555555566655554433
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=2.1e-05 Score=66.56 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=100.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 236 (349)
...++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+..+. +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 4456667777889999999999998764 44 4556888888888999999999988876543 56667777778889
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
.++++.|+.+.+++. ...|+. .+|..|..+|...|+++.|...++.+.-
T Consensus 247 k~~~~lAL~iAk~av-------~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAV-------ELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHH-------HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999998 447854 5999999999999999999999887764
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=3.4e-05 Score=65.27 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=58.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924 53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132 (349)
Q Consensus 53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (349)
.|+..+...++++.|..+++++. +.. |+.. ..++..+...++-.+|.+++++.... .|............+..
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~-~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLR-ERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHH-hcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 34444444555555555555555 222 3322 23445555555555555555555543 12222344444455555
Q ss_pred cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 018924 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180 (349)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 180 (349)
.++++.|+.+.+....-.|-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555322222333345555555555555555555555543
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.35 E-value=9.8e-07 Score=46.78 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 222 (349)
||.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3333333333333333333333333333333
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=9.3e-05 Score=66.40 Aligned_cols=241 Identities=16% Similarity=0.177 Sum_probs=158.0
Q ss_pred cHHHHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC--------C
Q 018924 12 TTVVYNSMLK--LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV--------A 81 (349)
Q Consensus 12 ~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~ 81 (349)
|..|=.++++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|.-.+..|....|. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3444444444 3556788888888777665 4578999999999999888887776666532221 1
Q ss_pred ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHH
Q 018924 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVI 161 (349)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 161 (349)
|+ .+-......-...|.+++|+.+|++-+. |..|=..|...|.|++|.++-+.. ..+. -..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~-DRiH-Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETK-DRIH-LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhc-ccee-hhhhHHHHH
Confidence 21 1212233445678999999999988653 444556677889999999988721 1111 124666666
Q ss_pred HHHhccCCHHHHHHHHHHHHh----------cC---------CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924 162 SSLLKLDDLESAEKIFEEWES----------QA---------LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 222 (349)
..+-..++.+.|++.|++... .. -..|...|......+-..|+.+.|..+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 767777888888887775321 10 022444555555555666777777777765543
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 291 (349)
|-+++...|-.|+.++|-++-++- -|......|.+.|-..|++.+|..+|.++.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es-----------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES-----------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc-----------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455666777788888887776653 255566677888888888888888876654
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=5e-05 Score=55.48 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=9.2
Q ss_pred HHHHhcCChHHHHHHHHHhh
Q 018924 56 SAYADASDHEGIDKILTMME 75 (349)
Q Consensus 56 ~~~~~~~~~~~a~~~~~~~~ 75 (349)
..+...|++++|...|+...
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~ 75 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKAL 75 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 33444444444444444444
No 136
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.31 E-value=0.00014 Score=64.63 Aligned_cols=164 Identities=16% Similarity=0.198 Sum_probs=85.4
Q ss_pred HhhcCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924 130 YGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208 (349)
Q Consensus 130 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 208 (349)
......|.+|+.+++ ....+. -..-|..+...|...|+++.|+++|-+. ..++--|.+|.+.|+++.|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 334455555555555 222211 1122555566666666666666666432 1344456666666666666
Q ss_pred HHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
.++-.+.. |+......|-.-..-+-.+|++.+|.++|-.+- .|+ ..|+.|-+.|..+...++..
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---------~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---------EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---------Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 66654443 233334445444555566666666666654431 233 23456666666666666554
Q ss_pred HHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924 289 LLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY 322 (349)
Q Consensus 289 ~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~ 322 (349)
+-... .-..+...+. -|-..| +.|.+.|-+..
T Consensus 875 k~h~d--~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 875 KHHGD--HLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HhChh--hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 33221 1223445555 666666 66766665543
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=7.4e-05 Score=54.59 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=67.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch--hhHHHHH
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDT---RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV--KSWYYLA 231 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 231 (349)
|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+.+......|+. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3566666666666666542 1111 11222445566667777777777766665422221 2333455
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018924 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289 (349)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 289 (349)
..+...|++++|+..++.... -......+......+.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-------EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-------cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666667777777777655321 122334455555666777777777766654
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.29 E-value=0.00017 Score=66.97 Aligned_cols=230 Identities=13% Similarity=0.085 Sum_probs=158.2
Q ss_pred ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh-------
Q 018924 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN------- 154 (349)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------- 154 (349)
.+...+..|+..+...+++++|.++.++..+. .|+....|-.+...+...++..++..+ . .....+.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-~-~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-N-LIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-h-hhhhcccccchhHHHH
Confidence 35667789999999999999999999987774 455545677777788888888888766 4 222233333
Q ss_pred ------------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924 155 ------------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222 (349)
Q Consensus 155 ------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 222 (349)
..+..+..+|-+.|+.++|..+++++.+.. +.|+.+.|.+...|... ++++|.+++.+....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 456667778888899999999999998876 66788888899888888 999999988877763
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--------------ccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ--------------TLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
|...+++..+.++|.++....+ ...+..--..++.-+-..|....+++++..+++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3333444444444444443200 001222234455556677888899999999999
Q ss_pred HHhhCCCCCchhHHHHh-hhhhcCcchHHHHHHH-HhCCCCCCcccc
Q 018924 289 LLNDKGFIPTDLQDKLL-DNVQNGKSNLETLREL-YGNSLAGNEETL 333 (349)
Q Consensus 289 ~~~~~~~~~~~~~~~l~-~~~~~g~~a~~~~~~m-~~~~~~p~~~t~ 333 (349)
.+.+..+.+.....-++ +|...=.. ...|++. +-.|+.-+..++
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~~kY~~-~~~~ee~l~~s~l~~~~~~~ 293 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYKEKYKD-HSLLEDYLKMSDIGNNRKPV 293 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHHHHccC-cchHHHHHHHhccccCCccH
Confidence 99999888888888888 77632222 4444443 223454443443
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.29 E-value=5.1e-05 Score=53.29 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCcc--cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC----HHH
Q 018924 193 NFLIDVYCRNGLLEKAENLVNHEKLKGRE--IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS----VES 266 (349)
Q Consensus 193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~ 266 (349)
..+...+.+.|++++|...|..+...... .....+..+...+.+.|++++|.+.|+.+... .|+ ...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~ 78 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-------YPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-------CCCCCcccHH
Confidence 33444444555555555555555443211 00123334445555555555555555555432 121 233
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 297 (349)
+..+..++.+.|+.++|...++.+....|.+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 4444444555555555555555555544433
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.28 E-value=5.4e-05 Score=64.45 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh--hcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHH
Q 018924 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQ--IKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN 159 (349)
Q Consensus 83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 159 (349)
+......+++.+....+++.+..++.+.... ...... .+.+++++.|.+.|..+.++.+++ ....|+-||..+++.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~-~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLP-STHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccC-ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444444555555555555555555554432 111111 233455555555555555555555 455555555555555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 198 (349)
++..+.+.|++..|.++...|...+...+..|+..-+.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 555555555555555555555444433444444333333
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.27 E-value=0.00018 Score=65.87 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG 93 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 93 (349)
..|..|...|....+...|...|...-+.+.. |...+......|++..+++.|..+.-..-++.....-..-|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45666666676666777777777776665322 45566677777777777777776632222010000011112223344
Q ss_pred HhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh-hhHHHHHHHHhccCCHHH
Q 018924 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLES 172 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~ 172 (349)
|.+.++..+|+.-|+..... .|.....|..++.+|.++|++..|.++|... ..+.|+. ..---..-.-+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA-s~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKA-SLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhh-HhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 55666666666666666553 3333367777777777777777777777622 2223332 111112223345566666
Q ss_pred HHHHHHHHH
Q 018924 173 AEKIFEEWE 181 (349)
Q Consensus 173 a~~~~~~~~ 181 (349)
|...+....
T Consensus 649 ald~l~~ii 657 (1238)
T KOG1127|consen 649 ALDALGLII 657 (1238)
T ss_pred HHHHHHHHH
Confidence 666555544
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=2.1e-06 Score=45.11 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKG 219 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (349)
|+.++.+|++.|+++.|.++|+.|.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333333333
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.27 E-value=0.0017 Score=59.07 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=131.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH
Q 018924 23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA--YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL 100 (349)
Q Consensus 23 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 100 (349)
....+++.+|+.-...+.+. .|+. .|..++.+ ..+.|+.++|..+++... ..+. -|..|...+-.+|.+.|+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALY-GLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhc-cCCC-CchHHHHHHHHHHHHHhhh
Confidence 34578899999999888776 3443 33344444 457899999998888876 4444 3788888899999999999
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC-C---------H
Q 018924 101 DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD-D---------L 170 (349)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~---------~ 170 (349)
++|..+|++..+. .|+. .....+..+|++.+++.+-.++--..-...+-....+-++++.....- . .
T Consensus 94 d~~~~~Ye~~~~~--~P~e-ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSE-ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999998874 4554 667777788888887765444332122244444555556666554321 1 1
Q ss_pred HHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHH-HHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924 171 ESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLV-NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248 (349)
Q Consensus 171 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 248 (349)
.-|.+.++.+.+.+-+. +..-.-.....+...|++++|..++ ....+.-..-+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23444444444432111 1111111222334456666666666 233333222233333444555556666666666666
Q ss_pred HHHHH
Q 018924 249 KVLAA 253 (349)
Q Consensus 249 ~~~~~ 253 (349)
+.+..
T Consensus 251 ~Ll~k 255 (932)
T KOG2053|consen 251 RLLEK 255 (932)
T ss_pred HHHHh
Confidence 66654
No 144
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.26 E-value=2e-05 Score=52.71 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHhhcCCCCCccHH
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGI-TYDRYTYCTRLSAYADAS--------DHEGIDKILTMMEADPNVALDWV 85 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 85 (349)
+-..-|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|. ..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence 334566777778999999999999999988 888899999988877642 2335677888888 777888888
Q ss_pred HHHHHHHHHhh
Q 018924 86 IYATVGNGYGK 96 (349)
Q Consensus 86 ~~~~li~~~~~ 96 (349)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.25 E-value=3e-05 Score=65.95 Aligned_cols=117 Identities=10% Similarity=0.087 Sum_probs=63.0
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHH-HHHh--hccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 018924 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKK--AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197 (349)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 197 (349)
.....+++.+....+.+.+..++- .... ....-..|..++++.|...|..+.+..++..=...|+-||..++|.|++
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 345555555555555555555544 1111 1111123344666666666666666666666666666666666666666
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
.+.+.|++..|.++...|...+.-.+..|+...+.+|.+-
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666555544444444544444444433
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.23 E-value=1.4e-06 Score=44.67 Aligned_cols=30 Identities=43% Similarity=0.730 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGI 44 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 44 (349)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888877763
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.20 E-value=0.0046 Score=56.46 Aligned_cols=209 Identities=11% Similarity=0.003 Sum_probs=118.2
Q ss_pred hhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc
Q 018924 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD 83 (349)
Q Consensus 4 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 83 (349)
|++++-.|-..++.++. +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++.. +.-|+
T Consensus 36 lkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~---~~~P~ 109 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERAN---QKYPS 109 (932)
T ss_pred HHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhCCc
Confidence 34443333333344333 45788888888777777665544 77788888888888888888888888887 33366
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc-CCHH---------HHHHHHH-HHHhhccC
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY-GKKD---------DVLRIWE-LYKKAVKV 152 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~---------~a~~~~~-~~~~~~~~ 152 (349)
..-...+..+|.+.+++.+-.++--++-+. .|..+..+=+.++..... ...+ -|.+.++ +...+.+.
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~ 187 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKI 187 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCcc
Confidence 666666777888877776544444444332 233323333334433322 2222 2233333 22222111
Q ss_pred C-hhhHHHHHHHHhccCCHHHHHHHHH-HHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924 153 L-NNGYRNVISSLLKLDDLESAEKIFE-EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220 (349)
Q Consensus 153 ~-~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 220 (349)
. ..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++..+|.
T Consensus 188 ~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 188 ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 1 1111112223346777888888883 333332333444445667777788888888888888887763
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.19 E-value=0.00047 Score=61.43 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=98.6
Q ss_pred HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH
Q 018924 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137 (349)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (349)
......|.+|+.+++.+. +.+. -..-|..+.+-|+..|+++.|+++|-+. ..++-.|..|.+.|+|.
T Consensus 742 ai~akew~kai~ildniq-dqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQ-DQKT--ASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HhhhhhhhhhHhHHHHhh-hhcc--ccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccccHH
Confidence 334455666666666555 3222 1222445556666666666666666542 23455566666666666
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
.|.++-. .-.+.......|-+-..-.-+.|++.+|+++|-.+. .|+. -|.+|-+.|..+...++..+-.-
T Consensus 809 da~kla~-e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 809 DAFKLAE-ECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHH-HhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 6655544 112222333445444555555666666665553321 2332 45566666666666655543321
Q ss_pred cCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 018924 218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286 (349)
Q Consensus 218 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 286 (349)
. .-..|...+..-|-..|+...|.+-|-+.-+ |.+-++.|...+.|++|-++
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------------HHHHHHHhhhhhhHHHHHHH
Confidence 1 1123445566666667777777766655432 23444555555666555444
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.18 E-value=0.00045 Score=56.72 Aligned_cols=91 Identities=18% Similarity=0.092 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHHHHc----Cc-ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHH-HHHHHHHHHHh
Q 018924 203 GLLEKAENLVNHEKLK----GR-EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE-SLAACLDYFKD 276 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~ 276 (349)
|+++.|.+.|++..+. +. ..-..++..+...+.+.|++++|.++|+++..........+++.. .+...+-++..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 4555555555544421 10 001223445555566666666666666666543111111122221 22222334455
Q ss_pred cCChhhHHHHHHHHhhC
Q 018924 277 EGDIGGAENFIELLNDK 293 (349)
Q Consensus 277 ~g~~~~a~~~~~~~~~~ 293 (349)
.||...|...+++....
T Consensus 209 ~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHGTT
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 66666666666666654
No 150
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.15 E-value=0.00052 Score=63.02 Aligned_cols=183 Identities=10% Similarity=-0.008 Sum_probs=130.9
Q ss_pred ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 018924 28 NFEKLDSLMHEMEENGITYD-RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM 106 (349)
Q Consensus 28 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 106 (349)
+...|+..|-+..+.. |+ ...|..|...|...-+...|.+.|+... +.+. .+........+.|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAF-eLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAF-ELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 3666777666665543 33 3478888888888778888999999887 5554 5667778899999999999999998
Q ss_pred HHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 018924 107 LKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC 186 (349)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (349)
.-..-+..+.......|.-..-.|.+.++...|+.-|+...+-.|-|...|..++++|.+.|++..|.++|.+.... .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 44333321111111234445556778889999999998656666677889999999999999999999999888764 4
Q ss_pred CCcchHHH--HHHHHHhcCcHHHHHHHHHHHHH
Q 018924 187 YDTRIPNF--LIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 187 ~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
|+. +|.. ..-..|..|.+.+|...+..+..
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 442 3332 33345678999999988887664
No 151
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.0017 Score=55.66 Aligned_cols=237 Identities=16% Similarity=0.104 Sum_probs=145.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH------
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT------ 89 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------ 89 (349)
...+.+...+..++..|++-+....... -+..-++....++...|.+.+....-+... +.|. -...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~gr-e~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAV-EVGR-ELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHhH-HHHHHHHHHHHHHH
Confidence 4556777778888888888888887764 355556666667777777777666555544 3333 22233332
Q ss_pred -HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh-hhHHHHHHHHhcc
Q 018924 90 -VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKL 167 (349)
Q Consensus 90 -li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~ 167 (349)
+..+|.+.++++.++..|.+.......|+. ..+....+++....+ ...-+.|.. .-...-...+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~----------ls~lk~~Ek~~k~~e-~~a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDL----------LSKLKEAEKALKEAE-RKAYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH----------HHHHHHHHHHHHHHH-HHHhhChhHHHHHHHHHHHHHhc
Confidence 334556667778888888775543222111 122233344443333 111122222 1222336667788
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 247 (349)
|++..|...|.++++.. +.|...|..-..+|.+.|.+..|..-.+...+.++. ....|..=..++....++++|.+.|
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998888876 667788888888888899988888887777775422 3344555555555566788888888
Q ss_pred HHHHHHhcccccCCCCHHHHHHHHHHHHh
Q 018924 248 KKVLAAYQTLVKWKPSVESLAACLDYFKD 276 (349)
Q Consensus 248 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 276 (349)
.+.++. .|+..-+..-+.-|..
T Consensus 450 ~eale~-------dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 450 QEALEL-------DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHhc-------CchhHHHHHHHHHHHH
Confidence 887743 5665544444444443
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.13 E-value=0.0011 Score=54.44 Aligned_cols=135 Identities=15% Similarity=0.106 Sum_probs=80.3
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-----cchh
Q 018924 157 YRNVISSLLKL-DDLESAEKIFEEWESQ----ALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-----IHVK 225 (349)
Q Consensus 157 ~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 225 (349)
+..+...|-.. |+++.|.+.|++..+. +.+. -..++..+...+.+.|++++|..+|+++...-.. .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34556667777 8888888888887642 2110 1234567788899999999999999998764322 2222
Q ss_pred -hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 226 -SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 226 -~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
.|-..+-++...|++..|.+.+++.... .+++..+ ......|+.+| ..||.+.....+.+......
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~---~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQ---DPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTT---STTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCc
Confidence 2333444666789999999999998743 0122222 34556666665 56676666665555554433
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.12 E-value=8.1e-05 Score=49.87 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=55.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCc-ccchhhHHHHHHHHhcCC--------CHHHHHHHHHHHHHHhcccccCCCCHH
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKLKGR-EIHVKSWYYLATGYRQNS--------QIHKAVEAMKKVLAAYQTLVKWKPSVE 265 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~p~~~ 265 (349)
.|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+.. +++|+..
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-----~lKP~~e 105 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-----KLKPNDE 105 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-----ccCCcHH
Confidence 34444555777777777777777777 677777777777665532 355677888888887 8888888
Q ss_pred HHHHHHHHHHh
Q 018924 266 SLAACLDYFKD 276 (349)
Q Consensus 266 ~~~~ll~~~~~ 276 (349)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=8.5e-05 Score=49.41 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG 95 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 95 (349)
|..+...+.+.|++++|...++...+... .+...+..+..++...+++++|.+.++... .... .+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKAL-ELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC-cchhHHHHHHHHHH
Confidence 44556666667777777777777765432 233556666666667777777777777665 3222 33345566666777
Q ss_pred hcCcHHHHHHHHHHHHH
Q 018924 96 KVGLLDKALAMLKKSEE 112 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~ 112 (349)
..|++++|...+....+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 77777777777666554
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.10 E-value=2e-05 Score=51.47 Aligned_cols=80 Identities=23% Similarity=0.179 Sum_probs=42.0
Q ss_pred cCcHHHHHHHHHHHHHcCcc-cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCC
Q 018924 202 NGLLEKAENLVNHEKLKGRE-IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGD 279 (349)
Q Consensus 202 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 279 (349)
.|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. . ...|+ ......+..+|.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-------~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-------KLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-------THHHCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-------CCCCCCHHHHHHHHHHHHHhCC
Confidence 35566666666666654431 1333444456666666666666666666 2 22222 2333344556666666
Q ss_pred hhhHHHHHHH
Q 018924 280 IGGAENFIEL 289 (349)
Q Consensus 280 ~~~a~~~~~~ 289 (349)
+++|..++++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666666654
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=0.00028 Score=49.47 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-CCCccHHHHHHHHH
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGIT--YDRYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIYATVGN 92 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~ 92 (349)
+-.+...+.+.|++++|.+.|..+.+.... .....+..+..++.+.|+++.|...++.+.... +.+.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555556666666666555543211 012234445555555566666666655554111 11111333444555
Q ss_pred HHhhcCcHHHHHHHHHHHHHh
Q 018924 93 GYGKVGLLDKALAMLKKSEEQ 113 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~ 113 (349)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555553
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.06 E-value=0.0001 Score=49.06 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=9.4
Q ss_pred HHHHHhhcCcHHHHHHHHHHHH
Q 018924 90 VGNGYGKVGLLDKALAMLKKSE 111 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~ 111 (349)
+...+...|++++|...+++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~ 27 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKAL 27 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHH
Confidence 3334444444444444444443
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.05 E-value=0.00019 Score=58.69 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH-HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL-YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
+|..++...-+.+..+.|..+|.+..+.+ ..+. .+|-..... +...++.+.|.++|+.....++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~-~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTY-HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-T-HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45566666666666666666666665321 1122 344444433 22245555566666644444555555566666666
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDT---RIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
.+.++.+.|..+|+..... +.++. ..|...+..-.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666543 22221 3566666666666666666666666655
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=0.00016 Score=61.36 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=51.0
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924 162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 241 (349)
..+...|+++.|...|+++++.. +.+...|..+..+|.+.|++++|...++++...... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 34445566666666666665543 334445555556666666666666666666654332 4445555666666666666
Q ss_pred HHHHHHHHHH
Q 018924 242 KAVEAMKKVL 251 (349)
Q Consensus 242 ~a~~~~~~~~ 251 (349)
+|+..|++++
T Consensus 88 eA~~~~~~al 97 (356)
T PLN03088 88 TAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHH
Confidence 6666666666
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.04 E-value=8e-06 Score=41.79 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.03 E-value=0.0048 Score=53.21 Aligned_cols=214 Identities=9% Similarity=-0.019 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH
Q 018924 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKV---GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL 140 (349)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (349)
.+++..+++... ..-...+..+|..+...--.. ...+.....++++...-....+ -+|..+++...+..-.+.|.
T Consensus 309 t~e~~~~yEr~I-~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 309 TDEAASIYERAI-EGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHH
Confidence 345556666554 222223334443333221111 1355666677766554322233 48999999999999999999
Q ss_pred HHHH-HHHhhccC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 141 RIWE-LYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 141 ~~~~-~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
.+|. ....+..+ +...+++++..+| +++...|.++|+--.+. ...++..-...++.+...++-..+..+|++....
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999 55555555 6677888888776 57888999999876554 2334455567888889999999999999999987
Q ss_pred Ccccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH
Q 018924 219 GREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283 (349)
Q Consensus 219 ~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 283 (349)
++.|| ...|..++.--..-|+...+.++-+++...++.. ..|...+-..+++.|.-.+....-
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~--qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD--QEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh--hcCCCChHHHHHHHHhhccccccc
Confidence 55544 4689999998889999999999988887642211 112222334455555555554433
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.02 E-value=4e-05 Score=50.03 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHHHHHhhcC-CcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 98 GLLDKALAMLKKSEEQIKG-AKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 98 g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
|+++.|+.+++++.+..+. ++. ..+..+..++.+.|++++|..+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~-~~~~~la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNS-AYLYNLAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHH-HHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhH-HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555555555443331 122 233334555555555555555554
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.01 E-value=0.00098 Score=50.29 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc-chhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-VNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+..+...+...|++++|...|++.....+.++ ....+..+...+.+.|++++|...++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444445555555555555555543322211 11344445555555555555555554
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.99 E-value=0.00041 Score=56.73 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924 49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK-VGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127 (349)
Q Consensus 49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (349)
.+|..+++..-+.+..+.|..+|.+.. +.+. .+..+|-.....-.+ .++.+.|.++|+...+. ...+. ..|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~-~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~-~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRAR-KDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDP-DFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-H-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHH-cCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCH-HHHHHHH
Confidence 467788888888888888888888887 4332 334445444444233 46666688888888875 23333 6788888
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhccCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018924 128 TLYGKYGKKDDVLRIWELYKKAVKVLN---NGYRNVISSLLKLDDLESAEKIFEEWESQ 183 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 183 (349)
..+...|+.+.|..+|+.....++++. ..|...+..=.+.|+.+.+.++.+.+.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888884444444333 47888888888888888888888887774
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.98 E-value=0.00048 Score=49.80 Aligned_cols=93 Identities=8% Similarity=-0.115 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL 167 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (349)
-.+...+...|++++|.++|+-+..- .|....-|-.|..++-..|++++|+..|.....-.+.|+..+..+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 34444555555566666555555542 3333245555555555555666665555533222334445555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 018924 168 DDLESAEKIFEEWES 182 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~ 182 (349)
|+.+.|.+.|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555443
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=1.4e-05 Score=63.09 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=45.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--
Q 018924 236 QNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-- 311 (349)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-- 311 (349)
+.+++.+|+..|.+++ .+.| |...|..=..+|++.|.++.|.+-.+.....++.....|..|. +|...|
T Consensus 93 ~~~~Y~eAv~kY~~AI-------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAI-------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HhhhHHHHHHHHHHHH-------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3445555555555554 2233 3333444444455555555555544444444444444455555 444444
Q ss_pred cchHHHHHHHHhCCCCCCcccccCCCCChhH
Q 018924 312 KSNLETLRELYGNSLAGNEETLSGPEGDTSD 342 (349)
Q Consensus 312 ~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~ 342 (349)
++|++.|++..+ +.|+..+|...|+-|..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHH
Confidence 444444444433 34555554444444433
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.95 E-value=0.00037 Score=57.78 Aligned_cols=271 Identities=19% Similarity=0.110 Sum_probs=166.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHh--h-cCCCCC-ccHHHHHHHHH
Q 018924 21 KLYYKTGNFEKLDSLMHEMEENGITYDR----YTYCTRLSAYADASDHEGIDKILTMM--E-ADPNVA-LDWVIYATVGN 92 (349)
Q Consensus 21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~--~-~~~~~~-~~~~~~~~li~ 92 (349)
.-+++.|+....+.+|+..++.|-. |. .+|..|-++|.-.+++++|+++...= . +..|-+ -....-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3578999999999999999998743 33 46777888888889999998875321 0 000100 11122223555
Q ss_pred HHhhcCcHHHHHHHHHH----HHHhhcCCcchhhHHHHHHHHhhcCC--------------------HHHHHHHHHH---
Q 018924 93 GYGKVGLLDKALAMLKK----SEEQIKGAKVNSAYNVILTLYGKYGK--------------------KDDVLRIWEL--- 145 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~--- 145 (349)
.+--.|.+++|.-.-.+ ..+.|-......++..+...|...|+ ++.|.++|..
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 56666777776543221 12222222222566667777765542 2445555541
Q ss_pred H--Hhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHH----hcCCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 146 Y--KKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWE----SQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 146 ~--~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
. ..+.. .-...|..+...|.-.|+++.|....+.-+ +.|-. .....+..+..++.-.|+++.|.+.|+.-..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1 11111 122456677777777889999887665432 22211 1234567788888899999999998886542
Q ss_pred ----cC-cccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 218 ----KG-REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 218 ----~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
.| -.....+.-+|...|.-...+++|+.++.+-+.-.+.-....-....+.+|..+|...|..++|..+...-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11 1223456667888888888999999998876543111112222456788899999999999999887665443
No 168
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.95 E-value=0.00027 Score=53.55 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=55.5
Q ss_pred CChhhHHHHHHHHh-----ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh
Q 018924 152 VLNNGYRNVISSLL-----KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS 226 (349)
Q Consensus 152 ~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 226 (349)
.+..+|..++..+. +.|+.+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 34455555555554 345666666666667777777777777776666543 1110 000 0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC
Q 018924 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279 (349)
Q Consensus 227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 279 (349)
+.++.. -...+.+-|++++++|... |+-||..|+..|++.+.+.+.
T Consensus 108 fQ~~F~--hyp~Qq~c~i~lL~qME~~-----gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFM--HYPRQQECAIDLLEQMENN-----GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhc--cCcHHHHHHHHHHHHHHHc-----CCCCcHHHHHHHHHHhccccH
Confidence 001110 0112345566666666666 666666666666666655543
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=0.00044 Score=51.98 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc-chhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-VNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
|..+...+...|++++|+..|++.......+. ...+|..+...+...|++++|+..++
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444445555555555554443211111 11244444455555555555555554
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.94 E-value=0.00059 Score=51.49 Aligned_cols=88 Identities=11% Similarity=-0.030 Sum_probs=44.6
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHH-HHHhhcc-CC-hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 018924 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK-VL-NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197 (349)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 197 (349)
..+..+...+...|++++|...|+ ....... ++ ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345556666666666666666666 2211111 11 2345555566666666666666666655532 222334444445
Q ss_pred HHHhcCcHHHHH
Q 018924 198 VYCRNGLLEKAE 209 (349)
Q Consensus 198 ~~~~~~~~~~a~ 209 (349)
++...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544443
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00038 Score=59.06 Aligned_cols=96 Identities=14% Similarity=0.020 Sum_probs=79.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG 98 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 98 (349)
....+...|++++|++.|.+.++.+.. +...|..+..+|...|++++|+..+++.. ..+. .+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~P-~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAI-ELDP-SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-CCHHHHHHHHHHHHHhC
Confidence 345667889999999999999987543 66788888899999999999999999988 5443 46677888999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCcc
Q 018924 99 LLDKALAMLKKSEEQIKGAKV 119 (349)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~ 119 (349)
++++|...|++..+. .|+.
T Consensus 85 ~~~eA~~~~~~al~l--~P~~ 103 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGD 103 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCC
Confidence 999999999999874 4554
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.92 E-value=0.00029 Score=50.85 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=58.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924 159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238 (349)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 238 (349)
.+..-+...|++++|..+|+.+.... +.+..-|..|..++-..|++++|...|......++. |+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 33444556677777777776666543 233444556666666677777777777766665543 5566666666777777
Q ss_pred CHHHHHHHHHHHHHH
Q 018924 239 QIHKAVEAMKKVLAA 253 (349)
Q Consensus 239 ~~~~a~~~~~~~~~~ 253 (349)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777766654
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.0031 Score=56.03 Aligned_cols=193 Identities=16% Similarity=0.215 Sum_probs=98.9
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 201 (349)
+|+.+...+.....|++|.+.|... + --...+.++.+..++++-+.+.+. ++-+....-.+.+++.+
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~--~------~~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYC--G------DTENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--c------chHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHh
Confidence 4555555555555566665555510 0 011234444444444444333333 34455666777888888
Q ss_pred cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH--------------
Q 018924 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL-------------- 267 (349)
Q Consensus 202 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~-------------- 267 (349)
.|.-++|.+.|-+... | ...+..|...++|.+|.++-++.. -|...|.
T Consensus 865 vGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~---------l~qv~tliak~aaqll~~~~~ 926 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ---------LPQVQTLIAKQAAQLLADANH 926 (1189)
T ss_pred hchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc---------chhHHHHHHHHHHHHHhhcch
Confidence 8888888776644322 2 234556777777777777765532 1222221
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC----CCCCchhHHH-Hh-hhhhcC-cchHHHHHHHHhCCCCCCccc--ccCCCC
Q 018924 268 AACLDYFKDEGDIGGAENFIELLNDK----GFIPTDLQDK-LL-DNVQNG-KSNLETLRELYGNSLAGNEET--LSGPEG 338 (349)
Q Consensus 268 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~-l~-~~~~~g-~~a~~~~~~m~~~~~~p~~~t--~~~~l~ 338 (349)
.--|..+.+.|..-.|-+++.+|.+. +.|....-.. ++ ++.-.. .++++-.+.....|...|... -..++.
T Consensus 927 ~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~ 1006 (1189)
T KOG2041|consen 927 MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLA 1006 (1189)
T ss_pred HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhh
Confidence 11233455667766666666666543 3333332111 22 333333 556666666666666555443 233445
Q ss_pred ChhHHHH
Q 018924 339 DTSDLIE 345 (349)
Q Consensus 339 ~~~~~~~ 345 (349)
+.+++.+
T Consensus 1007 ~~~ri~~ 1013 (1189)
T KOG2041|consen 1007 EQSRILE 1013 (1189)
T ss_pred hHHHHHH
Confidence 5555444
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.89 E-value=0.00068 Score=50.95 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc--cHHHHHHHHHHHhhcCcHHHHHH
Q 018924 29 FEKLDSLMHEMEE-NGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALA 105 (349)
Q Consensus 29 ~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 105 (349)
+..+...+..+.+ .+..-....|..+...+...|++++|...+++.. .....+ ...++..+...+...|++++|+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM-RLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555532 2222223466777777888899999999999886 332222 23577888899999999999999
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHh-------hcCCHHHHHHHHH
Q 018924 106 MLKKSEEQIKGAKVNSAYNVILTLYG-------KYGKKDDVLRIWE 144 (349)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~ 144 (349)
.+++.... .|....++..+...+. ..|+++.|+..++
T Consensus 94 ~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 94 YYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 99988864 3443356666666666 5566665554444
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00041 Score=55.09 Aligned_cols=97 Identities=16% Similarity=-0.028 Sum_probs=57.6
Q ss_pred HHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924 129 LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208 (349)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 208 (349)
-+.+.++|.+|+..|.....-.+-|.+-|..-..+|++.|.++.|.+-.+..+... +.-...|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 34556666666666664444444555566666666666666666666666665532 22234566666666666666666
Q ss_pred HHHHHHHHHcCcccchhhHH
Q 018924 209 ENLVNHEKLKGREIHVKSWY 228 (349)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~ 228 (349)
.+.|++.++ +.|+-.+|.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666666666 335544443
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.82 E-value=0.011 Score=47.31 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
.+..-|.+.|.+..|..-++.+++.++ +..........+..+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp---~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYP---DTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 455668888899889999999887633 2233456677788888899999998887766543
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.0016 Score=57.88 Aligned_cols=134 Identities=11% Similarity=-0.064 Sum_probs=60.7
Q ss_pred CCccHHHHHHHHHHHhhc-----CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH--------HHHHHHHHHH
Q 018924 80 VALDWVIYATVGNGYGKV-----GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK--------DDVLRIWELY 146 (349)
Q Consensus 80 ~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~ 146 (349)
.+.+...|...+.+.... ++...|..+|++..+. .|+...+|..+..++.....+ ..+.+..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345666666666654332 2355777777777763 455534555444433222111 1111111100
Q ss_pred -H-hhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 147 -K-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 147 -~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
. ...+.+...|..+...+...|++++|...++++...+ |+...|..+...+...|+.++|...+++...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0 0122223344444444444455555555555554432 3444455555555555555555555555444
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.0024 Score=56.76 Aligned_cols=139 Identities=12% Similarity=-0.033 Sum_probs=95.8
Q ss_pred ccCChhhHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc--------CcHHHHHHHHHHH
Q 018924 150 VKVLNNGYRNVISSLLKL-----DDLESAEKIFEEWESQALCYD-TRIPNFLIDVYCRN--------GLLEKAENLVNHE 215 (349)
Q Consensus 150 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 215 (349)
.+.+...|...+++.... ++...|..+|++..+. .|+ ...|..+..++... .++..+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345567788887775432 2367899999999885 444 34455444444332 1233444444443
Q ss_pred HHc-CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924 216 KLK-GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 216 ~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 294 (349)
... ....+...|..+.......|++++|...+++++. +.|+...|..+...+...|+.++|.+.+++.....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 1223456777776667778999999999999994 46888899999999999999999999999998887
Q ss_pred CCC
Q 018924 295 FIP 297 (349)
Q Consensus 295 ~~~ 297 (349)
|.+
T Consensus 484 P~~ 486 (517)
T PRK10153 484 PGE 486 (517)
T ss_pred CCC
Confidence 643
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.78 E-value=0.012 Score=46.94 Aligned_cols=179 Identities=11% Similarity=0.025 Sum_probs=101.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHH--HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924 53 TRLSAYADASDHEGIDKILTMMEADPNVALDWV--IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130 (349)
Q Consensus 53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (349)
.....+...|++++|.+.|+.+. .....+... ..-.++.++.+.+++++|...+++..+..+..+. ..|...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~-~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHH
Confidence 34455667899999999999887 322222111 1235677888899999999999998886555444 4444444443
Q ss_pred hh-----------------cCCHHH---HHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcc
Q 018924 131 GK-----------------YGKKDD---VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR 190 (349)
Q Consensus 131 ~~-----------------~~~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (349)
+. ..|... |+..|+......| ++ .-..+|...+..+... + ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP-~S-------------~ya~~A~~rl~~l~~~-l---a~ 176 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP-NS-------------QYTTDATKRLVFLKDR-L---AK 176 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc-CC-------------hhHHHHHHHHHHHHHH-H---HH
Confidence 21 124443 4444442223332 22 2233343333333221 0 00
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcC--cccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKG--REIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
.--.+...|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|.++.....
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11135566777788888888887777642 12233455667778888888888777665543
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.75 E-value=0.00036 Score=52.92 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCCcchHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccC
Q 018924 186 CYDTRIPNFLIDVYCR-----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW 260 (349)
Q Consensus 186 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 260 (349)
..|..+|..+++.|.+ .|+++-....++.|.+-|+..|..+|+.|+..+-+ |.+- -..+|+.+-.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 4466777778887765 47888899999999999999999999999998875 3332 2223333321
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCchhHHHHh-hhhhcC---cchHHHHHHH
Q 018924 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLL-DNVQNG---KSNLETLREL 321 (349)
Q Consensus 261 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~-~~~~~g---~~a~~~~~~m 321 (349)
- .-.+-+-|.+++++|...|. ||..++..++ .+.+.+ .+...+.--|
T Consensus 114 ------------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 114 ------------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred ------------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1 12355778999999999998 9999999999 999888 4444444444
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.73 E-value=0.001 Score=55.25 Aligned_cols=266 Identities=14% Similarity=-0.011 Sum_probs=164.3
Q ss_pred HHHhcCChHHHHHHHHHhhcCCCCCcc----HHHHHHHHHHHhhcCcHHHHHHHHHH--HHHh--hcCCcchhhHHHHHH
Q 018924 57 AYADASDHEGIDKILTMMEADPNVALD----WVIYATVGNGYGKVGLLDKALAMLKK--SEEQ--IKGAKVNSAYNVILT 128 (349)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~--~~~~--~~~~~~~~~~~~l~~ 128 (349)
-+++.|+......+|+... ..|. -| ..+|..|.++|.-.+++++|++.... ...+ |-......+-..|.+
T Consensus 26 RLck~gdcraGv~ff~aA~-qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAAL-QVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHH-Hhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4788999999999999887 5554 33 34567788888888899999885432 1111 112222134455677
Q ss_pred HHhhcCCHHHHHHHHH-H----HHhhcc-CChhhHHHHHHHHhccCC--------------------HHHHHHHHHHHH-
Q 018924 129 LYGKYGKKDDVLRIWE-L----YKKAVK-VLNNGYRNVISSLLKLDD--------------------LESAEKIFEEWE- 181 (349)
Q Consensus 129 ~~~~~~~~~~a~~~~~-~----~~~~~~-~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~- 181 (349)
.+-..|.+++|+-... . ...|.+ .....+..+...|...|+ ++.|.++|.+=+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 7777888888876544 1 111211 223456666676765443 233444443322
Q ss_pred ---hcCC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHH----HcCcc-cchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 182 ---SQAL-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEK----LKGRE-IHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 182 ---~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
+.|- -.-...|..|...|.-.|+++.|....+.-. +.|-+ ..-..+..+..++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111 1123456667777777889999987665322 22211 1234677888899999999999999998765
Q ss_pred HhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 253 AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK------GFIPTDLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 253 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
...+-..-.....+..+|..+|.-..++++|+.++.+-... .+.....++++. +|..-| ++|+...+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 41111112234556677888888888999999887643321 224556788888 888877 778777666544
Q ss_pred C
Q 018924 324 N 324 (349)
Q Consensus 324 ~ 324 (349)
.
T Consensus 344 ~ 344 (639)
T KOG1130|consen 344 S 344 (639)
T ss_pred H
Confidence 3
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=0.00032 Score=43.09 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
...+.+.|++++|...|+.+.+..+. +...+..+..++...|++++|..+|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666666666666666665532 5556666666666666666666666666643
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0025 Score=50.99 Aligned_cols=102 Identities=18% Similarity=0.039 Sum_probs=52.6
Q ss_pred CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcccccCCC
Q 018924 186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN---SQIHKAVEAMKKVLAAYQTLVKWKP 262 (349)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~p 262 (349)
+-|...|-.|...|...|+.+.|...|....+... +++..+..+..++... ..-.++.++|++++. ..|
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-------~D~ 224 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALA-------LDP 224 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-------cCC
Confidence 44555566666666666666666666655554321 2333444444433222 233455566666653 234
Q ss_pred -CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 263 -SVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 263 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
|......|...+...|++.+|...|+.|.+..+
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 344444455556666666666666666665544
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.69 E-value=0.00027 Score=43.91 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=21.3
Q ss_pred cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 202 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
.|++++|...|+.+....+. +...+..+..+|.+.|++++|.++++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444443322 33333344444444444444444444444
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.69 E-value=0.011 Score=43.84 Aligned_cols=96 Identities=6% Similarity=0.045 Sum_probs=43.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHH
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YDTRIPNFLIDVY 199 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 199 (349)
.--.|..+..+.|++.+|...|+....|+- -|......+.++....+++..|...++.+.+.+.. .++...-.+.+.|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 334455555555555555555553333322 33344444445555555555555555554442210 0111222344445
Q ss_pred HhcCcHHHHHHHHHHHHH
Q 018924 200 CRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 200 ~~~~~~~~a~~~~~~~~~ 217 (349)
...|++.+|+..|+....
T Consensus 171 aa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 171 AAQGKYADAESAFEVAIS 188 (251)
T ss_pred HhcCCchhHHHHHHHHHH
Confidence 555555555555555544
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.66 E-value=0.00024 Score=44.18 Aligned_cols=51 Identities=10% Similarity=0.190 Sum_probs=33.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 24 YKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
.+.|++++|+++|+.+...... +...+..+..+|.+.|++++|..+++.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777777777777665332 55566667777777777777777777766
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.65 E-value=0.00034 Score=43.61 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 018924 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS-QIHKAVEAMKKVLA 252 (349)
Q Consensus 189 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 252 (349)
..+|..+...+...|++++|...|++..+.++. +...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555666666666666666666666665432 4555666666666666 56666666666654
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.0068 Score=42.23 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=22.0
Q ss_pred HHhcCChHHHHHHHHHhhcCCCCCcc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 58 YADASDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
+-..|+.++|+.+|++.. ..|.... ...+-.+...+...|++++|..+|++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444 3333221 12222334444444444444444444443
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.008 Score=41.86 Aligned_cols=10 Identities=20% Similarity=0.046 Sum_probs=3.7
Q ss_pred cCcHHHHHHH
Q 018924 202 NGLLEKAENL 211 (349)
Q Consensus 202 ~~~~~~a~~~ 211 (349)
.|+.++|...
T Consensus 88 ~gr~~eAl~~ 97 (120)
T PF12688_consen 88 LGRPKEALEW 97 (120)
T ss_pred CCCHHHHHHH
Confidence 3333333333
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.52 E-value=0.027 Score=43.77 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=45.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHH
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF 274 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 274 (349)
++.-|=.+....+|...+..+.+. . ...--.+...|.+.|.+..|..-++.+++.++ +..........++.+|
T Consensus 116 li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp---~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 116 LIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAIIRFQYVIENYP---DTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHH
T ss_pred HHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHH
Confidence 333333344455555555544431 0 01112356678888888888888888887622 1111234567777888
Q ss_pred HhcCChhhHH
Q 018924 275 KDEGDIGGAE 284 (349)
Q Consensus 275 ~~~g~~~~a~ 284 (349)
.+.|..+.+.
T Consensus 189 ~~l~~~~~a~ 198 (203)
T PF13525_consen 189 YKLGLKQAAD 198 (203)
T ss_dssp HHTT-HHHHH
T ss_pred HHhCChHHHH
Confidence 8888877544
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.0013 Score=40.29 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=25.3
Q ss_pred HHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
.+.+.|++++|...|+++. +... -+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l-~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQAL-KQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHH-CCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555554 3221 2444444455555555555555555555443
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.44 E-value=0.006 Score=49.19 Aligned_cols=101 Identities=15% Similarity=0.069 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA 269 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 269 (349)
|...+..+.+.|++++|...|+.+.+..+... ...+-.+...|...|++++|...|+.+.+.++ +-......+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHH
Confidence 33333333445666666666666665432211 13445556666666666666666666664311 00011333334
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 270 CLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 270 ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
+...+...|+.++|..+++.+.+..|
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 44455566666666666666665544
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.0014 Score=47.94 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVES 266 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 266 (349)
...++..+...|+++.|..+.+.+....+- |...|..+|.+|...|+...|.+.|+.+.....+..|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 444556666677777777777777765543 56677777777777777777777777776655555577776655
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.0075 Score=48.62 Aligned_cols=99 Identities=9% Similarity=-0.040 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-CCCccHHHHHHHH
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIYATVG 91 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li 91 (349)
.|+..+....+.|++++|...|+.+++...... ...+..+..+|...|++++|...|+.+.... +-+.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 345444444555666666666666665421100 2345555666666666666666666654111 1111233333445
Q ss_pred HHHhhcCcHHHHHHHHHHHHHh
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQ 113 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~ 113 (349)
.++...|+.++|.++|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555666666666666666553
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.00099 Score=41.46 Aligned_cols=62 Identities=18% Similarity=0.065 Sum_probs=36.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-cHHHHHHHHHHHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG-LLEKAENLVNHEKL 217 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 217 (349)
..|..+...+...|++++|...|.+..+.. +.+...|..+..+|...| ++++|.+.++...+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555556666666666666666665543 334455555666666666 56666666665554
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.045 Score=43.09 Aligned_cols=130 Identities=8% Similarity=0.012 Sum_probs=73.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH---
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID--- 197 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--- 197 (349)
+.+.++..+...+.+.-....++ ......+.++...+.+++.-.+.|+.+.|...|+...+..-..|..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34555666666666666666666 33333345555666666666777777777777776655433344444433332
Q ss_pred --HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 198 --VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 198 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
.|.-.+++..|...+.++...+.. |+..-|.-.-+..-.|+..+|++.+..|++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455666666666666654432 444444444444446667777777777663
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.35 E-value=0.00094 Score=42.77 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 291 (349)
.+|+.+...|...|++++|++.|++.++.......-.|+ ..++..+..++...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666666666666666666666666441111111122 4455666666666666666666666543
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.33 E-value=0.037 Score=49.18 Aligned_cols=256 Identities=13% Similarity=0.100 Sum_probs=147.6
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHhhcC
Q 018924 9 LARTTVVYNSMLKLYYKTGNFEKLDSL---------MHEMEENGITYDRYTYCTRLSAYADASDHE--GIDKILTMMEAD 77 (349)
Q Consensus 9 ~~p~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~ 77 (349)
+.|..+.+.+-+-.|.+.|.+++|..+ ++.+... ..+.-.++..=.+|.+..+.. +...-+++++ +
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k-~ 628 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERK-K 628 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHH-h
Confidence 455666677777788889998888654 1221111 012233445555666666543 3334455666 6
Q ss_pred CCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHH-----HHHHHHhhcCCHHHHHHHHH-H--HHhh
Q 018924 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN-----VILTLYGKYGKKDDVLRIWE-L--YKKA 149 (349)
Q Consensus 78 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~-~--~~~~ 149 (349)
.|-.|+... +...++-.|++.+|-++|.+- |.+...-..|+ -...-+...|+.++-..+.+ . ....
T Consensus 629 rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 629 RGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred cCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 676688765 677788889999999988764 21111111222 12334455555555554544 1 1112
Q ss_pred ccCChhhHHHHHHHHhccCCHHHHHHHHHH------HHhcCC---CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924 150 VKVLNNGYRNVISSLLKLDDLESAEKIFEE------WESQAL---CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220 (349)
Q Consensus 150 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 220 (349)
++.. .+....+...|+.++|..+.-+ +.+-+- ..+..+...+...+-+...+.-|.++|..|-+.
T Consensus 703 ~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-- 776 (1081)
T KOG1538|consen 703 IKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-- 776 (1081)
T ss_pred cCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--
Confidence 2211 1334445566776666654321 111111 223334444444455566777888888777542
Q ss_pred ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHH-----------HHHHHHHHHHhcCChhhHHHHHHH
Q 018924 221 EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE-----------SLAACLDYFKDEGDIGGAENFIEL 289 (349)
Q Consensus 221 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-----------~~~~ll~~~~~~g~~~~a~~~~~~ 289 (349)
..++......++|++|..+-++.- ...||.. -|.-.-++|.+.|+-.+|.+++++
T Consensus 777 -------ksiVqlHve~~~W~eAFalAe~hP-------e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 777 -------KSLVQLHVETQRWDEAFALAEKHP-------EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred -------HHHhhheeecccchHhHhhhhhCc-------cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 346677788899999998887754 4455532 234444678899999999999988
Q ss_pred HhhC
Q 018924 290 LNDK 293 (349)
Q Consensus 290 ~~~~ 293 (349)
+...
T Consensus 843 Ltnn 846 (1081)
T KOG1538|consen 843 LTNN 846 (1081)
T ss_pred hhhh
Confidence 8664
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.046 Score=43.03 Aligned_cols=184 Identities=9% Similarity=-0.044 Sum_probs=117.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHH
Q 018924 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL 104 (349)
Q Consensus 25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 104 (349)
..|+..+.+.-+..++.. ....+...-.....+..+..|++-. ..+-+.++.++.-.|.+.-..
T Consensus 134 ~lgnpqesLdRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl--------~~Vmy~~~~~llG~kEy~iS~ 197 (366)
T KOG2796|consen 134 YLGNPQESLDRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRL--------GRVMYSMANCLLGMKEYVLSV 197 (366)
T ss_pred hcCCcHHHHHHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHH--------HHHHHHHHHHHhcchhhhhhH
Confidence 357777776666555432 1223333333333455666666544 134556777777788888888
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHH-----HHHHHhccCCHHHHHHHHH
Q 018924 105 AMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN-----VISSLLKLDDLESAEKIFE 178 (349)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~ 178 (349)
.++.+.++..++.++ .....|++.-.+.||.+.|...|+ ..+...+.+..+.+. ....+...+++..|...+.
T Consensus 198 d~~~~vi~~~~e~~p-~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 198 DAYHSVIKYYPEQEP-QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHHHHHHhCCcccH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 888888887666666 778888888888999999998888 333333444444433 3345556778888888888
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHH
Q 018924 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY 228 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 228 (349)
+..... +.|+...|.=.-+..-.|+..+|.+.++.|.... |...+-+
T Consensus 277 ~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 277 EILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 777654 3344444443333444688999999999998854 4444333
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.27 E-value=0.044 Score=40.78 Aligned_cols=159 Identities=14% Similarity=0.006 Sum_probs=110.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924 53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132 (349)
Q Consensus 53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (349)
.+..+..+.=|++.... +..++....|+...-..|..+..+.|+..+|...|++... |+..+.+.....+.++...
T Consensus 61 ~~~~a~~q~ldP~R~~R---ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa 136 (251)
T COG4700 61 TLLMALQQKLDPERHLR---EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFA 136 (251)
T ss_pred HHHHHHHHhcChhHHHH---HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHh
Confidence 34445555555554432 2222334557777777899999999999999999999887 4555554788889999999
Q ss_pred cCCHHHHHHHHH-HHHhh-ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHH
Q 018924 133 YGKKDDVLRIWE-LYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN 210 (349)
Q Consensus 133 ~~~~~~a~~~~~-~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 210 (349)
.+++..|...++ ..... ...++.+...+.+.+...|.+..|+..|+..... -|+...--.....+.+.|+.+++..
T Consensus 137 ~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 137 IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 999999999999 33322 1123344667788899999999999999999885 3444333334455677887776665
Q ss_pred HHHHHHH
Q 018924 211 LVNHEKL 217 (349)
Q Consensus 211 ~~~~~~~ 217 (349)
-+..+.+
T Consensus 215 q~~~v~d 221 (251)
T COG4700 215 QYVAVVD 221 (251)
T ss_pred HHHHHHH
Confidence 5544443
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.033 Score=44.78 Aligned_cols=106 Identities=13% Similarity=0.056 Sum_probs=65.9
Q ss_pred HHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---cHHHHHHHHHHHHHcCccc
Q 018924 146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG---LLEKAENLVNHEKLKGREI 222 (349)
Q Consensus 146 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~ 222 (349)
.....+-|...|-.|..+|...|+.+.|...|....+.. +++...+..+..++.... ...++..+|+++...+..
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~- 225 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA- 225 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-
Confidence 334455566677777777777777777777777766642 344555555555544332 245667777777765443
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
|+.+...|...+...|++.+|...|+.|++.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555556666677777777777777777765
No 202
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.22 E-value=0.0072 Score=42.54 Aligned_cols=100 Identities=10% Similarity=0.117 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
|..++..+|.++++.|+.+....+++..- |+.++... ..+. ........|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence 34566777777777777777777765542 22211100 0000 111334456666666666
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (349)
.+|+..|++..|.++.+...+.-.-+-+...|..|+.-...
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 66666677777766666665543222223566666655443
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.22 E-value=0.004 Score=39.19 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
.|.+.++++.|.++++.+...++. ++..|......+...|++++|.+.|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344455555555555555544332 33444444445555555555555555555
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.18 E-value=0.011 Score=41.62 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (349)
|..++..++.++++.|+++....+++..- |+.++... ..+. --......|+. .+..++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~---------~~~~---------~~~~spl~Pt~-~lL~AI 58 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKK---------KEGD---------YPPSSPLYPTS-RLLIAI 58 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCcc---------ccCc---------cCCCCCCCCCH-HHHHHH
Confidence 45678888888888888888888876654 33322211 0000 11122456777 999999
Q ss_pred HHHHhhcCCHHHHHHHHH--HHHhhccCChhhHHHHHHHHhccC
Q 018924 127 LTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLD 168 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~li~~~~~~~ 168 (349)
+.+|+.+|++..|.++.+ +...+++.+..+|..|++-+....
T Consensus 59 v~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 59 VHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999 566677777889999998665433
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.15 E-value=0.12 Score=43.59 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhc--CCcchhhHHHHHHHHhh---cCCHHHHHHHHH-HHHhhccCChhhHHHHH
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIK--GAKVNSAYNVILTLYGK---YGKKDDVLRIWE-LYKKAVKVLNNGYRNVI 161 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~-~~~~~~~~~~~~~~~li 161 (349)
..++-.|-...+++..+++.+.+..... .++.+.+-....-++.+ .|+.++|++++. .......+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3455567777888888888887765310 11111223344455555 777788887777 45556666777777776
Q ss_pred HHHhc---------cCCHHHHHHHHHHHHh
Q 018924 162 SSLLK---------LDDLESAEKIFEEWES 182 (349)
Q Consensus 162 ~~~~~---------~~~~~~a~~~~~~~~~ 182 (349)
..|.. ....++|...|.+.-+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 66542 1124555555555444
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.13 E-value=0.011 Score=43.17 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=34.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH-----HcCcccchhh
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK-----LKGREIHVKS 226 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 226 (349)
...++..+...|+++.|..+.+.+.... +.+...|..++.+|...|+...|.++|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555555666666666666655543 4455556666666666666666666665543 2355555543
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.05 E-value=0.0035 Score=39.45 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=20.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 23 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
|.+.+++++|+++++.+...+.. +...+.....++.+.|++++|...++...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444444433211 23333333344444444444444444433
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.98 E-value=0.17 Score=42.33 Aligned_cols=293 Identities=15% Similarity=0.076 Sum_probs=176.8
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHhhcCCCCCccHHH--HHH
Q 018924 16 YNSMLKLYYK--TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA--DASDHEGIDKILTMMEADPNVALDWVI--YAT 89 (349)
Q Consensus 16 ~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ 89 (349)
|.+|-.++.. .|+-..|.++-.+..+. +.-|......++.+-. -.|+.+.|.+-|+.|. . . |.... ...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~--d-PEtRllGLRg 159 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-D--D-PETRLLGLRG 159 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-c--C-hHHHHHhHHH
Confidence 4455555543 46666676665554322 3345555555655433 4799999999999998 2 2 33222 233
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-H-HHhhccCChhh--HHHHHHHHh
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-L-YKKAVKVLNNG--YRNVISSLL 165 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~-~~~~~~~~~~~--~~~li~~~~ 165 (349)
|.-.--+.|..+.|.+.-++.-.. -|.....+...+...+..|+|+.|+++++ . ...-+.++..- -..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 444445678888888888877653 45555789999999999999999999999 3 33334455421 222332221
Q ss_pred ---ccCCHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924 166 ---KLDDLESAEKIFEEWESQALCYDTRI-PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 166 ---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 241 (349)
-..+...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+..+.|+. +. +..+.+.|+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd-- 309 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD-- 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--
Confidence 12345556655555544 4555332 223456788899999999999999886644443 32 233445554
Q ss_pred HHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh--hhhhcC--cchHH
Q 018924 242 KAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL--DNVQNG--KSNLE 316 (349)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~~~g--~~a~~ 316 (349)
.+..-+++.... ..++|| ..+...+..+-...|++..|..--+...+. -|....|..+. .-...| .++..
T Consensus 310 ta~dRlkRa~~L----~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-~pres~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 310 TALDRLKRAKKL----ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-APRESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred cHHHHHHHHHHH----HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-CchhhHHHHHHHHHhhccCchHHHHH
Confidence 344444444433 255664 566667777778888888887766555443 23444454444 334445 56777
Q ss_pred HHHHHHhCCCCC
Q 018924 317 TLRELYGNSLAG 328 (349)
Q Consensus 317 ~~~~m~~~~~~p 328 (349)
.+.+-.+.--.|
T Consensus 385 wlAqav~APrdP 396 (531)
T COG3898 385 WLAQAVKAPRDP 396 (531)
T ss_pred HHHHHhcCCCCC
Confidence 777666553344
No 209
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.045 Score=45.94 Aligned_cols=261 Identities=12% Similarity=-0.052 Sum_probs=119.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG 98 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 98 (349)
.-..+.+..++.+|+..+...++..+. +..-|..-+..+...|+++++.--.++-. +... -....+.-.-.++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~-r~kd-~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSV-RLKD-GFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhe-ecCC-CccccccchhhhhhhhH
Confidence 334455556666677777666665433 34455555556666666666654444333 1111 01113334445555555
Q ss_pred cHHHHHHHHHHHHHh---------------hcCCcchhhHHHH-HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924 99 LLDKALAMLKKSEEQ---------------IKGAKVNSAYNVI-LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS 162 (349)
Q Consensus 99 ~~~~a~~~~~~~~~~---------------~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 162 (349)
+..+|.+.++.-... ...++.-..|..+ ..++...|++++|.++---...-... ..+...++
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~--n~~al~vr 209 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT--NAEALYVR 209 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc--hhHHHHhc
Confidence 555666555522100 0000000111111 12334455555555443311111111 12222222
Q ss_pred --HHhccCCHHHHHHHHHHHHhcCCCCCcchHHH---HHHH----------HHhcCcHHHHHHHHHHHHHc---Ccccch
Q 018924 163 --SLLKLDDLESAEKIFEEWESQALCYDTRIPNF---LIDV----------YCRNGLLEKAENLVNHEKLK---GREIHV 224 (349)
Q Consensus 163 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~----------~~~~~~~~~a~~~~~~~~~~---~~~~~~ 224 (349)
++...++.+.|..-|++.++. .|+...-.. .... ..+.|++..|.+.|.+.+.. +..|+.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 223455666666666665553 233222111 1111 23456666666666666652 233444
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
..|........+.|+..+|+.--+..+ .+.|. ...+..-..++.-.++|++|.+-++...+.
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al-------~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEAL-------KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhh-------hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555566666677777766666655 22221 111222223444556666666666655544
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.94 E-value=0.0062 Score=38.89 Aligned_cols=62 Identities=21% Similarity=0.189 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHc----Cc-ccc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLK----GR-EIH-VKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
+++.+...|...|++++|...|++..+. |. .|+ ..++..+...|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566666677777777777777665532 11 122 44566677777777777777777777654
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.86 E-value=0.068 Score=45.48 Aligned_cols=130 Identities=14% Similarity=0.011 Sum_probs=69.8
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHH-HHHhh-ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 018924 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198 (349)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 198 (349)
.+|...++...+..-.+.|..+|- ....+ +.++...+++++..++ .|+...|..+|+.-... ++.+..--+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 366666666666666666666666 33333 3455566666666444 35556666666554332 12222223445555
Q ss_pred HHhcCcHHHHHHHHHHHHHcCcccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 199 YCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 199 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
+.+.++-+.|..+|+....+ +..+ ...|..+|.--..-|+...+..+=+.+...
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 56666666666666633321 1111 335666666555666666666555555554
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.23 Score=44.81 Aligned_cols=92 Identities=8% Similarity=0.001 Sum_probs=57.5
Q ss_pred hccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhH-
Q 018924 149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW- 227 (349)
Q Consensus 149 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 227 (349)
.++.+....-.+..++.+.|.-++|.+.+-+- + .|. .-+.+|...+++.+|.++-++..- |.+.+.
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tli 913 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLI 913 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHH
Confidence 45556666777888888888888887776432 1 222 355677777888888777654332 222211
Q ss_pred -------------HHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 228 -------------YYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 228 -------------~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
.--|..+.+.|++-+|.+++.+|.+.
T Consensus 914 ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 914 AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 11234456677777777777777765
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.15 Score=39.60 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=46.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchh---HH
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL---QD 302 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~ 302 (349)
.+..++.-|-......+|...+..+.+. .- ..-..+..-|.+.|.+..|..-++.+.+.-|.+... ..
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~--------la-~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~ 182 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNR--------LA-EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALA 182 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 3444555555555666666655555432 01 111235677899999999999999999886644433 44
Q ss_pred HHh-hhhhcC
Q 018924 303 KLL-DNVQNG 311 (349)
Q Consensus 303 ~l~-~~~~~g 311 (349)
.++ +|.+.|
T Consensus 183 ~l~~~y~~l~ 192 (203)
T PF13525_consen 183 RLAEAYYKLG 192 (203)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 455 777777
No 214
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.82 E-value=0.23 Score=41.40 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=82.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 234 (349)
.+.+..|.-+...|+...|.++..+.. .|+...|..-+.+++..++|++-..+... +-++..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 456667777888899888888866652 57888899999999999999988776432 13567899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018924 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289 (349)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 289 (349)
.+.|+..+|..+..++. + ..-+..|.+.|++.+|.+.-.+
T Consensus 248 ~~~~~~~eA~~yI~k~~-----------~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-----------D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCC-----------h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988877632 1 3445667788888888765443
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.26 Score=41.59 Aligned_cols=195 Identities=13% Similarity=-0.022 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhc---------------CCCCCccHHHHHHH-HHHHhhcCcHHHHHHHHHHHHHh
Q 018924 50 TYCTRLSAYADASDHEGIDKILTMMEA---------------DPNVALDWVIYATV-GNGYGKVGLLDKALAMLKKSEEQ 113 (349)
Q Consensus 50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~ 113 (349)
.+.-.-+++...++..+|...++.-.. ...-+|...+|-.| ..++.-.|+.++|.++--...+.
T Consensus 119 ~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 119 GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 445556666666777777766653210 00111333444333 45667778888888877666552
Q ss_pred hcCCcchhhHHHHHHH--HhhcCCHHHHHHHHHHHHhhccCChhh-------------HHHHHHHHhccCCHHHHHHHHH
Q 018924 114 IKGAKVNSAYNVILTL--YGKYGKKDDVLRIWELYKKAVKVLNNG-------------YRNVISSLLKLDDLESAEKIFE 178 (349)
Q Consensus 114 ~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~~~~~~a~~~~~ 178 (349)
.+.. .+...+++ +.-.++.+.+...|+. .....|+... +..-..-..+.|++..|.+.|.
T Consensus 199 --d~~n--~~al~vrg~~~yy~~~~~ka~~hf~q-al~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 199 --DATN--AEALYVRGLCLYYNDNADKAINHFQQ-ALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred --ccch--hHHHHhcccccccccchHHHHHHHhh-hhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 3333 44444443 4456777888888772 2223344322 1122334457788889999998
Q ss_pred HHHhc---CCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh---HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 179 EWESQ---ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS---WYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 179 ~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
+.+.. +..++...|.....+..+.|+..+|..--+...+ .|... |..-..++...++|++|.+-|++..+
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88763 2344555566666777788999999888887777 33332 22223345556788888888888876
Q ss_pred H
Q 018924 253 A 253 (349)
Q Consensus 253 ~ 253 (349)
.
T Consensus 350 ~ 350 (486)
T KOG0550|consen 350 L 350 (486)
T ss_pred h
Confidence 5
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.77 E-value=0.025 Score=41.33 Aligned_cols=84 Identities=15% Similarity=0.070 Sum_probs=41.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHH
Q 018924 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245 (349)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 245 (349)
..|++++|..+|.-+...+ ..+..-|..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence 4555555555555554432 223333444555555555555555555544433221 33334444555555555555555
Q ss_pred HHHHHH
Q 018924 246 AMKKVL 251 (349)
Q Consensus 246 ~~~~~~ 251 (349)
.|....
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 555554
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.74 E-value=0.29 Score=41.44 Aligned_cols=172 Identities=16% Similarity=-0.026 Sum_probs=106.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHH-HHHhh---ccCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWE-LYKKA---VKVLNNGYRNVISSLLK---LDDLESAEKIFEEWESQALCYDTRIPNF 194 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~-~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (349)
+...++-+|-...+++..+++++ +.... +.-....-.....++.+ .|+.++|..++..+......++..++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556899999999999999 33221 11222233345556667 8999999999999666656788888888
Q ss_pred HHHHHHh---------cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC-HHH---HHHHH---HHHH-HHhccc
Q 018924 195 LIDVYCR---------NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ-IHK---AVEAM---KKVL-AAYQTL 257 (349)
Q Consensus 195 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~---a~~~~---~~~~-~~~~~~ 257 (349)
+...|-. ....++|...|.+.-+.. ||..+--.++..+...|. .+. ..++- .... +. ..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k--g~ 298 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK--GS 298 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh--cc
Confidence 7777643 124678888887766532 444332222222222332 222 22222 1111 11 11
Q ss_pred ccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924 258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 258 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 297 (349)
..-..+-..+..++.++.-.|+.++|.+..+.|.+..+|.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1223466677888999999999999999999999876554
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.71 E-value=0.3 Score=43.72 Aligned_cols=216 Identities=14% Similarity=0.137 Sum_probs=125.3
Q ss_pred HHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH-----
Q 018924 16 YNSMLKLYYKTGNF--EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA----- 88 (349)
Q Consensus 16 ~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 88 (349)
++..=.+|.+-++. -+.+.-+++++++|-.|+... +...|+-.|.+.+|-++|.+-- ..+- -...|+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G-~enR--AlEmyTDlRMF 674 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSG-HENR--ALEMYTDLRMF 674 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcC-chhh--HHHHHHHHHHH
Confidence 44444555554443 344455667788888888754 4456677888888888886543 1111 111111
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHh--hcCCcchhhHHHHHHHHhhcCCHHHHHHHHH------H-HHhhcc---CChhh
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQ--IKGAKVNSAYNVILTLYGKYGKKDDVLRIWE------L-YKKAVK---VLNNG 156 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~-~~~~~~---~~~~~ 156 (349)
-+..-+...|..++-..+.++-.+. ....+ .+....+...|+.++|..+.- + ..-+.+ .+..+
T Consensus 675 D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~ 749 (1081)
T KOG1538|consen 675 DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREP 749 (1081)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhH
Confidence 1233344444444433333322111 11111 234455667788888877642 1 111112 33345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchh-----------
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK----------- 225 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------- 225 (349)
...+...+.+...+..|-++|..|-. ...+++.....+++.+|+.+-++..+ ..||+.
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhh
Confidence 55555666677788888889887743 23467777888999999999888776 334432
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
-|.-.-.+|.+.|+-.+|.+++++....
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1333446788888888888888887654
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.69 E-value=0.035 Score=40.58 Aligned_cols=90 Identities=10% Similarity=-0.072 Sum_probs=48.7
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL 170 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 170 (349)
..-+...|++++|..+|+-+..-+ |-...-|..|..++-..+++++|+..|.+...-.+-|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 334445666666666666655432 222234555666666666666666666632222233444444555566666666
Q ss_pred HHHHHHHHHHHh
Q 018924 171 ESAEKIFEEWES 182 (349)
Q Consensus 171 ~~a~~~~~~~~~ 182 (349)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 666666665554
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.076 Score=44.55 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=16.8
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHH
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
-.+.|.+.|++..|...|++...
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~ 236 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVS 236 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHH
Confidence 34567788888888888877654
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.047 Score=46.82 Aligned_cols=61 Identities=13% Similarity=-0.099 Sum_probs=32.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT----RIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
..++.+..+|.+.|++++|...|++.++. .|+. ..|..+..+|...|++++|...+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555553 2332 1245555555555555555555555554
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.53 E-value=0.027 Score=44.72 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=57.6
Q ss_pred CccHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHH
Q 018924 10 ARTTVVYNSMLKLYYKT-----GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA----------------SDHEGID 68 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 68 (349)
+.|-.+|-+.+..+.+. +.++=....+..|.+-|+.-|..+|+.|++.+-+. .+-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666776666666543 44555556667777778888888888887765432 1223456
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924 69 KILTMMEADPNVALDWVIYATVGNGYGKVGL 99 (349)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 99 (349)
+++++|. ..|+.||..+-..|++++.+.+.
T Consensus 144 ~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQME-WHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHH-HcCCCCchHHHHHHHHHhccccc
Confidence 6677776 66777777666667777666654
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.51 E-value=0.21 Score=41.42 Aligned_cols=129 Identities=13% Similarity=0.000 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH--HHHhhccCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhc--CCC-CCcc-hH
Q 018924 123 YNVILTLYGKYGKKDDVLRIWE--LYKKAVKVL----NNGYRNVISSLLKLDDLESAEKIFEEWESQ--ALC-YDTR-IP 192 (349)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~-~~~~-~~ 192 (349)
..++..++...+.++.+++.|+ +.-.....| ...|..+.+.|.+..++++|.-+..+..+. .+. .|.. -|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345555555566666666666 221111111 134556666666666666665555444321 111 0111 11
Q ss_pred -----HHHHHHHHhcCcHHHHHHHHHHHHH----cCccc-chhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 193 -----NFLIDVYCRNGLLEKAENLVNHEKL----KGREI-HVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 193 -----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
..+.-++...|++-.|.+.-++..+ .|-++ .......+...|-..|+.+.|+.-|+.+.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1123344455555555555554432 22111 11223344455555666666555555554
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.50 E-value=0.4 Score=41.39 Aligned_cols=64 Identities=9% Similarity=0.016 Sum_probs=54.7
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDR----YTYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346788999999999999999999999998886 4553 358889999999999999999999987
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.49 E-value=0.34 Score=43.06 Aligned_cols=163 Identities=13% Similarity=-0.036 Sum_probs=82.4
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhh-cCCcch----hhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhhH-H
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQI-KGAKVN----SAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNNGY-R 158 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~-~ 158 (349)
.++....-.|+-+.+++.+.+..+.+ +..+.. -.|+..+..++. ..+.+.|.++++...... |+...| -
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl~ 271 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFLF 271 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 35666666666666666666554421 111110 134445544443 234556666666333333 333333 2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcC--C-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHH-H
Q 018924 159 NVISSLLKLDDLESAEKIFEEWESQA--L-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-Y 234 (349)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 234 (349)
.-.+.+...|++++|.+.|+...... . +.....+--+.-.+.-..++++|...|..+.+.+- -+...|..+..+ +
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 33345556677777777776544211 0 11222344455566667777777777777776432 123333333322 3
Q ss_pred hcCCCH-------HHHHHHHHHHHHH
Q 018924 235 RQNSQI-------HKAVEAMKKVLAA 253 (349)
Q Consensus 235 ~~~~~~-------~~a~~~~~~~~~~ 253 (349)
...|+. ++|.++|.++...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 345555 6777777776554
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.073 Score=42.28 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc-HHHHHHH
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGIT--YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD-WVIYATV 90 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 90 (349)
..|+.-+.. .+.|++..|...|...++.... -....+-.|..++...|+++.|..+|..+.++.+-.|. ....--|
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 367776664 4566788888888888876321 12345666788888888888888888877633332232 3556667
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHh
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQ 113 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~ 113 (349)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77888888888888888888775
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.12 Score=43.46 Aligned_cols=126 Identities=11% Similarity=-0.067 Sum_probs=83.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhcc---------------CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc
Q 018924 125 VILTLYGKYGKKDDVLRIWELYKKAVK---------------VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT 189 (349)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (349)
.-.+.|.+.|++..|...|++...-+. .-..++..+..++.+.+++..|.+.....+..+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 344567788888888888773222111 122357778888889999999999988888865 5566
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh-cCCC-HHHHHHHHHHHHHH
Q 018924 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR-QNSQ-IHKAVEAMKKVLAA 253 (349)
Q Consensus 190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~-~~~a~~~~~~~~~~ 253 (349)
-....=..+|...|+++.|+..|+++.+.. |+....+.=+..|. +... .+...++|..|...
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555566778888899999999999988844 55444443333333 3333 33446777777754
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.33 E-value=0.51 Score=39.44 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=67.6
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA 269 (349)
Q Consensus 190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 269 (349)
.+.+..+.-+...|+...|.++-.+..- |+...|...+.+++..++|++-.++... .- .+.-|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s---------kK--sPIGyep 242 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS---------KK--SPIGYEP 242 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC---------CC--CCCChHH
Confidence 3555667777888999888888666543 7999999999999999999987775432 22 3477888
Q ss_pred HHHHHHhcCChhhHHHHHHH
Q 018924 270 CLDYFKDEGDIGGAENFIEL 289 (349)
Q Consensus 270 ll~~~~~~g~~~~a~~~~~~ 289 (349)
++.+|.+.|...+|..+...
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999998877
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.32 E-value=0.29 Score=43.50 Aligned_cols=161 Identities=20% Similarity=0.121 Sum_probs=98.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHh--hccCC-----hhhHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchH
Q 018924 124 NVILTLYGKYGKKDDVLRIWELYKK--AVKVL-----NNGYRNVISSLLK----LDDLESAEKIFEEWESQALCYDTRIP 192 (349)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (349)
..+++...-.||-+.+++.+..... ++.-. ...|..++..++. ..+.+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 3444455566888888888773222 11111 1235555554443 34678899999988875 4666555
Q ss_pred HH-HHHHHHhcCcHHHHHHHHHHHHHcC---cccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHH
Q 018924 193 NF-LIDVYCRNGLLEKAENLVNHEKLKG---REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268 (349)
Q Consensus 193 ~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 268 (349)
.. -.+.+...|++++|.+.|++..... .+.....+--+...+.-.++|++|.+.|..+.+. -.-...+|.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSka~Y~ 343 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSKAFYA 343 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHHHHHH
Confidence 43 3345666899999999998655311 1122334455666778889999999999999864 122344444
Q ss_pred HHHHH-HHhcCCh-------hhHHHHHHHHhh
Q 018924 269 ACLDY-FKDEGDI-------GGAENFIELLND 292 (349)
Q Consensus 269 ~ll~~-~~~~g~~-------~~a~~~~~~~~~ 292 (349)
.+..+ +...|+. ++|.++|.+...
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44433 3456777 778887776643
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.26 Score=40.45 Aligned_cols=152 Identities=9% Similarity=0.046 Sum_probs=104.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC--CCCccHHHHHHHHHHHhhcCcHHH
Q 018924 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP--NVALDWVIYATVGNGYGKVGLLDK 102 (349)
Q Consensus 25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~ 102 (349)
-+|+..+|-..++++.+. .+.|...+...-.+|.-.|+.+.....++++.... +++-....-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 457777888888888875 45577788888889999999988888888876232 222222222455667778999999
Q ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc----CChhhHHHHHHHHhccCCHHHHHHHHH
Q 018924 103 ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK----VLNNGYRNVISSLLKLDDLESAEKIFE 178 (349)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~ 178 (349)
|++.-++..+- .+....+-.+....+-..|++.++.++.......-. .-.+-|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999888763 344435667788888889999999988762111111 111223344455667799999999997
Q ss_pred H
Q 018924 179 E 179 (349)
Q Consensus 179 ~ 179 (349)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.86 Score=41.67 Aligned_cols=109 Identities=12% Similarity=0.178 Sum_probs=60.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 234 (349)
.+.+-.+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+... .+.-|..++.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344445555566666666666655542 4555666666666666666665555433222 244566666666
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 018924 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287 (349)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 287 (349)
.+.|+.++|..++-+.- +.. -...+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv~-------~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG-------GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccC-------ChH-------HHHHHHHHhccHHHHHHHH
Confidence 66666666666665442 111 3345566666666665543
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.28 E-value=0.37 Score=41.66 Aligned_cols=145 Identities=12% Similarity=-0.048 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHh-cCCCCC-cchHHHHHHHHHh---------cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 169 DLESAEKIFEEWES-QALCYD-TRIPNFLIDVYCR---------NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 169 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
..+.|..+|.+... ....|+ ...|..+..++.. .....+|.+.-++..+.+.. |......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 35678888888872 223444 3334443333322 23355677777777776654 777777777777778
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-C-chhHHHHh-hhhhcC-c
Q 018924 238 SQIHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDKGFI-P-TDLQDKLL-DNVQNG-K 312 (349)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~l~-~~~~~g-~ 312 (349)
++++.|..+|+++. .+.||. .+|......+.-.|+.++|.+.+++..+..|. - .......+ .|+..+ +
T Consensus 352 ~~~~~a~~~f~rA~-------~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~ 424 (458)
T PRK11906 352 GQAKVSHILFEQAK-------IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLK 424 (458)
T ss_pred cchhhHHHHHHHHh-------hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchh
Confidence 88999999999998 558864 44444445566789999999999998887662 2 22344445 888889 9
Q ss_pred chHHHHHHH
Q 018924 313 SNLETLREL 321 (349)
Q Consensus 313 ~a~~~~~~m 321 (349)
.|+.++-+-
T Consensus 425 ~~~~~~~~~ 433 (458)
T PRK11906 425 NNIKLYYKE 433 (458)
T ss_pred hhHHHHhhc
Confidence 999887543
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.53 Score=38.06 Aligned_cols=144 Identities=11% Similarity=0.008 Sum_probs=58.1
Q ss_pred HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH
Q 018924 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137 (349)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (349)
....|++.+|...|.... .... -+...-..++.+|...|+.+.|..++..+...-..... .....-|..+.+.....
T Consensus 144 ~~~~e~~~~a~~~~~~al-~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~-~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQAL-QAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAA-HGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHH-HhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHH-HHHHHHHHHHHHHhcCC
Confidence 344555555555555544 2121 11223334555555555555555555554332111111 11111222233332222
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCcH
Q 018924 138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGLL 205 (349)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 205 (349)
+...+-+ .....+-|...-..+...+...|+.+.|.+.+-.+.++. -.-|...-..|+..+.-.|.-
T Consensus 221 ~~~~l~~-~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 221 EIQDLQR-RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 2222222 111222233344445555555566655555544443321 122333444555555555533
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.15 E-value=0.073 Score=42.43 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=57.5
Q ss_pred cCChhhHHHHHHHHh-----ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchh
Q 018924 151 KVLNNGYRNVISSLL-----KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK 225 (349)
Q Consensus 151 ~~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 225 (349)
..|..+|...+..+. +.++++-....++.|.+.|+..|..+|+.|+..+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 345555666665554 23455555566666666666666666666665543221 11111
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 279 (349)
.+....-.|- .+-+-++.++++|... |+.||..+-..|++++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~h-----GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWH-----GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHc-----CCCCchHHHHHHHHHhccccc
Confidence 1111111121 1234467777777776 777777777777777766554
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.12 E-value=0.77 Score=39.46 Aligned_cols=130 Identities=14% Similarity=0.091 Sum_probs=86.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh-HHHHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS-WYYLAT 232 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~ 232 (349)
..|...+.+-.+..-.+.|..+|-+..+.+ +.+++.++++++..++ .|+...|..+|+--...- ||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 456777777777777788888888887777 5677777787777665 466777777777544422 34333 344555
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
-+...++-+.|..+|+..+. .+..+ ...|..+|..=+.-|+...+..+=+++...
T Consensus 475 fLi~inde~naraLFetsv~------r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVE------RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHH------HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 66677777788888876664 33333 456777777777777777666666555554
No 236
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.06 E-value=0.1 Score=42.10 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=68.4
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA 269 (349)
Q Consensus 190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 269 (349)
.++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.+......|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45677888888889999999999999887654 77889999999999999999999999988866667788888877766
Q ss_pred HHHH
Q 018924 270 CLDY 273 (349)
Q Consensus 270 ll~~ 273 (349)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.01 E-value=0.51 Score=41.40 Aligned_cols=130 Identities=13% Similarity=0.003 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924 50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129 (349)
Q Consensus 50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (349)
..+.++.-+-+.|-.+.|+++...-. .-.....+.|+++.|.++.++. .+. ..|..|...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~------~~~-~~W~~Lg~~ 356 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKEL------DDP-EKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCC------STH-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhc------CcH-HHHHHHHHH
Confidence 34555555555555555554432211 1233445556665555554432 122 456666666
Q ss_pred HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHH
Q 018924 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209 (349)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 209 (349)
....|+++-|.+.|+.. .-|..++-.|.-.|+.+...++.+.....| -+|....++.-.|++++..
T Consensus 357 AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHH
Confidence 66666666666555511 114444445555555555555555444443 1333333444445555555
Q ss_pred HHHH
Q 018924 210 NLVN 213 (349)
Q Consensus 210 ~~~~ 213 (349)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.98 E-value=0.38 Score=34.72 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=43.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 158 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
..++..+...+.......+++.+...+ ..+...++.++..|++.+ .++....+.. . .+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHHc
Confidence 345555555556666666666665554 245555666666665543 2222233221 1 2233334455556666
Q ss_pred CCHHHHHHHHHHH
Q 018924 238 SQIHKAVEAMKKV 250 (349)
Q Consensus 238 ~~~~~a~~~~~~~ 250 (349)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666666554
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.97 E-value=0.73 Score=37.85 Aligned_cols=165 Identities=16% Similarity=0.032 Sum_probs=88.2
Q ss_pred hHHHHHHHHhhcCCHHHH---HHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 018924 122 AYNVILTLYGKYGKKDDV---LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV 198 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 198 (349)
+...++.+|...+..+.. ..+++......+-.+.++..-+..+.+.++.+.+.+++..|...- ......+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHH
Confidence 466677777777765544 444443333333334556667777777888888888888888752 2233445555555
Q ss_pred HHh--cCcHHHHHHHHHHHHHcCcccchh-hHHHHH-H---HHhcCC------CHHHHHHHHHHHHHHhcccccCCCCHH
Q 018924 199 YCR--NGLLEKAENLVNHEKLKGREIHVK-SWYYLA-T---GYRQNS------QIHKAVEAMKKVLAAYQTLVKWKPSVE 265 (349)
Q Consensus 199 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li-~---~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~p~~~ 265 (349)
+.. ......|...++.+....+.|... ....++ . ...+.+ +.+...+++....+. .+.+.+..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~----~~~~ls~~ 240 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS----LGKQLSAE 240 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH----hcCCCCHH
Confidence 422 223445666666665544444443 111111 1 111211 244555555544333 13333444
Q ss_pred HHHHHHH-------HHHhcCChhhHHHHHHHHh
Q 018924 266 SLAACLD-------YFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 266 ~~~~ll~-------~~~~~g~~~~a~~~~~~~~ 291 (349)
+-..+.. .+.+.++++.|.+.++-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4333332 3567889999999987543
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.2 Score=39.91 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc--cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHH
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGRE--IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESL 267 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~ 267 (349)
.|+.-+.. .+.|++..|...|...++..+. -....+-.|..++...|++++|...|..+.+.++ -.| -+..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P----~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP----KSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC----CCCCChHHH
Confidence 35544433 3455677777777666665422 0122334466667777777777777777665411 111 23445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 268 AACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 268 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
--|..+..+.|+.++|..+|+++.+..|
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 5555566667777777777777666644
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.91 E-value=0.38 Score=34.45 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=43.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGI--TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG 95 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 95 (349)
.....+.|++++|.+.|+.+..+-. +-....--.++.+|.+.+++++|...++++. +.........|...+.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi-rLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI-RLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCCCccHHHHHHHHH
Confidence 3445567777777777777776521 1123355566777777777777777777776 3333222233444444433
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.87 E-value=0.025 Score=31.32 Aligned_cols=35 Identities=11% Similarity=-0.020 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhH
Q 018924 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301 (349)
Q Consensus 267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 301 (349)
+..+...|.+.|++++|+++++++.+..|.+...|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 33444445555555555555555555444444433
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.76 E-value=0.97 Score=37.72 Aligned_cols=203 Identities=13% Similarity=0.076 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc---HH
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEEN--GITYD---RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD---WV 85 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 85 (349)
.+|..+..+.++.|.+++++..--.-++. ...-. -..|..+.+++-+.-++.+++.+-..-..-+|..|. ..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34555666666667666654432111110 00101 124455555555555666666555443322333331 12
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC-----CcchhhHHHHHHHHhhcCCHHHHHHHHHH---HHhhcc-CCh-h
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKG-----AKVNSAYNVILTLYGKYGKKDDVLRIWEL---YKKAVK-VLN-N 155 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~-~~~-~ 155 (349)
...++..++.-.+.++++++.|+...+-... ... .++-.|.+.|....|+++|.-+... ....+. .|. .
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl-qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL-QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee-ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 3345777788888999999999887653222 222 4788999999999999999877662 222333 222 2
Q ss_pred hHHH-----HHHHHhccCCHHHHHHHHHHHHh----cCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 156 GYRN-----VISSLLKLDDLESAEKIFEEWES----QALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 156 ~~~~-----li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
-|.. +.-++-..|....|.+..++..+ .|-.+ -....-.+.+.|...|+.+.|+.-|+....
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3433 33455678888888888887654 33221 122344677889999999999888877655
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.74 E-value=0.41 Score=42.00 Aligned_cols=133 Identities=15% Similarity=0.178 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
....+.+++.+-+.|.++.|+++-..-. .-.....+.|+++.|.++.++. .+...|..|..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~ 355 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGD 355 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHH
Confidence 3447778888888888888887754322 2344566889999887664433 46679999999
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 172 (349)
...+.|+++-|++.|.+. .-|..|+-.|.-.|+.+...++.+....... ++....++.-.|+.++
T Consensus 356 ~AL~~g~~~lAe~c~~k~----------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 356 EALRQGNIELAEECYQKA----------KDFSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEE 420 (443)
T ss_dssp HHHHTTBHHHHHHHHHHC----------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHH
T ss_pred HHHHcCCHHHHHHHHHhh----------cCccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHH
Confidence 999999999999999884 2467788888889998777777763332222 5566666667788887
Q ss_pred HHHHHHH
Q 018924 173 AEKIFEE 179 (349)
Q Consensus 173 a~~~~~~ 179 (349)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 245
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=1.7 Score=39.97 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=67.3
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH
Q 018924 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL 267 (349)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 267 (349)
..-+.+--+.-+...|+..+|.++-.+.+- ||-..|-.-+.+++..++|++-+++-+... .+.-|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk-----------sPIGy 747 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK-----------SPIGY 747 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC-----------CCCCc
Confidence 334555566677778888888887766654 788888888999999999988777665542 13556
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 268 AACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 268 ~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
.-.+.+|.+.|+.++|..++.++..
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccCC
Confidence 6778889999999999988876643
No 246
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.70 E-value=1.1 Score=37.84 Aligned_cols=249 Identities=14% Similarity=0.035 Sum_probs=159.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924 24 YKTGNFEKLDSLMHEMEENGITYDRYTYC----TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL 99 (349)
Q Consensus 24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 99 (349)
.-.|+++.|.+-|+-|.. |+.|-. .|.-..-+.|+.+.|...-+..- ..-. .-.-.+...+...|..|+
T Consensus 131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa-~~Ap-~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAA-EKAP-QLPWAARATLEARCAAGD 203 (531)
T ss_pred HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH-hhcc-CCchHHHHHHHHHHhcCC
Confidence 347999999999999986 333332 23333346789998888887775 3222 223445678899999999
Q ss_pred HHHHHHHHHHHHHhhcC-Ccch-hhHHHHHHHHh--h-cCCHHHHHHHHHHHHhhccCChhh-HHHHHHHHhccCCHHHH
Q 018924 100 LDKALAMLKKSEEQIKG-AKVN-SAYNVILTLYG--K-YGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESA 173 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~-~~~~-~~~~~l~~~~~--~-~~~~~~a~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a 173 (349)
++.|+++++.-++..+. ++.. ..-..|+.+-. . ..+...|...-. ...++.||..- -.....++.+.|+..++
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~-~a~KL~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL-EANKLAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH-HHhhcCCccchHHHHHHHHHHhccchhhh
Confidence 99999999987664332 2221 11222332211 1 223444443332 34455566543 33445788899999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH-cCccc-chhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL-KGREI-HVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
-.+++.+-+....|+ ++ ++..+.+.|+. +..-+++..+ ...+| +..+-..+..+-...|++..|..--+...
T Consensus 283 ~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 999999998754444 33 23334455553 3333333322 11223 45566677788888999999888777776
Q ss_pred HHhcccccCCCCHHHHHHHHHHH-HhcCChhhHHHHHHHHhhC
Q 018924 252 AAYQTLVKWKPSVESLAACLDYF-KDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 252 ~~~~~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~ 293 (349)
...|....|..|.+.- ...||-.++...+.+..+.
T Consensus 357 -------r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 -------REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -------hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5589888888887764 4559999999999888764
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.58 E-value=1.1 Score=36.90 Aligned_cols=225 Identities=14% Similarity=0.132 Sum_probs=125.7
Q ss_pred HHhcCChhHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHhcC-ChHHHHHHHHHhhc-------CCCCCccH--
Q 018924 23 YYKTGNFEKLDSLMHEMEENG--ITYDRY------TYCTRLSAYADAS-DHEGIDKILTMMEA-------DPNVALDW-- 84 (349)
Q Consensus 23 ~~~~g~~~~a~~~~~~m~~~~--~~p~~~------~~~~ll~~~~~~~-~~~~a~~~~~~~~~-------~~~~~~~~-- 84 (349)
..+.|+.+.|..++.+..... ..|+.. .|+.-...+ ..+ +++.|..++++... .....|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 357899999999999987643 233321 233333333 445 88777666655431 11222332
Q ss_pred ---HHHHHHHHHHhhcCcHH---HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhH
Q 018924 85 ---VIYATVGNGYGKVGLLD---KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGY 157 (349)
Q Consensus 85 ---~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 157 (349)
.+...++.+|...+..+ +|.++++.+....+.+. .++..-+..+.+.++.+.+.+++. |... +......+
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~ 158 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchH
Confidence 44567888888877655 56667777766544333 477777788888899999999998 5444 33233345
Q ss_pred HHHHHHH---hccCCHHHHHHHHHHHHhcCCCCCcc-hHH-HHHHH---HHhcC------cHHHHHHHHHHHHHc-Cccc
Q 018924 158 RNVISSL---LKLDDLESAEKIFEEWESQALCYDTR-IPN-FLIDV---YCRNG------LLEKAENLVNHEKLK-GREI 222 (349)
Q Consensus 158 ~~li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~l~~~---~~~~~------~~~~a~~~~~~~~~~-~~~~ 222 (349)
..++..+ ... ....|...+..+....+.|... ... .++.. ..+.+ +++....+++.+.+. +.+.
T Consensus 159 ~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~l 237 (278)
T PF08631_consen 159 DSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQL 237 (278)
T ss_pred HHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCC
Confidence 5555544 333 3345666666665544555543 111 11111 11111 145555555543331 2222
Q ss_pred chhh---HHHH----HHHHhcCCCHHHHHHHHHHHHH
Q 018924 223 HVKS---WYYL----ATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 223 ~~~~---~~~l----i~~~~~~~~~~~a~~~~~~~~~ 252 (349)
+..+ ..++ ...+.+.++++.|.++|+-...
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2222 2222 2346678999999999987653
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.54 E-value=0.069 Score=29.55 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKG 219 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (349)
+..+..+|.+.|++++|.++|++..+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4455555666666666666666665544
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.54 E-value=0.87 Score=35.59 Aligned_cols=202 Identities=18% Similarity=0.096 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH-H
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS-S 163 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~-~ 163 (349)
..+......+...+.+..+...+.........+.....+......+...+++..+...+.........+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 444455555555566665555555554310112221345555555555555555655555222111111111222222 4
Q ss_pred HhccCCHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924 164 LLKLDDLESAEKIFEEWESQAL--CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 241 (349)
+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 5566666666666665533110 01112222223334455566666666666555322112344555555566666666
Q ss_pred HHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 242 KAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
.|...+...... .|+ ...+..+...+...+..+.+...+......
T Consensus 220 ~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 220 EALEYYEKALEL-------DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHhh-------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666532 333 223333333333445556666555555544
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.46 E-value=0.43 Score=33.41 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=25.6
Q ss_pred HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018924 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182 (349)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 182 (349)
+...|+.+.|++.|.....-.+-....||.-..++.-.|+.++|..-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555533333333444455555555555555555555544443
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.45 E-value=0.53 Score=33.00 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=53.2
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCH---HHHHHHHHHH
Q 018924 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV---ESLAACLDYF 274 (349)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~ll~~~ 274 (349)
++...|+++.|.+.|.+....-++ ....||.-..++.-+|+.++|++-+++.++. .|-+ +. ..|..-...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~-trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALEL----AGDQ-TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHh----cCcc-chHHHHHHHHHHHHH
Confidence 345567777777777766654322 5556777777777777777777777776654 1111 11 1222222235
Q ss_pred HhcCChhhHHHHHHHHhhCC
Q 018924 275 KDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 275 ~~~g~~~~a~~~~~~~~~~~ 294 (349)
...|+-+.|+.=|....+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 56677777777776666554
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.35 E-value=0.62 Score=32.74 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
......+..+...|+-++-.++++.+.+ .-.|++.....+..+|.+.|+..++.++++++.+.|.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK------NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555666667777777777766653 2356666677777777777777777777777777664
No 253
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.82 Score=33.88 Aligned_cols=122 Identities=15% Similarity=0.062 Sum_probs=48.4
Q ss_pred HhcCChHHHHHHHHHhhcCCCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchh--hHHHHHHHHhhcCC
Q 018924 59 ADASDHEGIDKILTMMEADPNVALD-WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--AYNVILTLYGKYGK 135 (349)
Q Consensus 59 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 135 (349)
++.+..++|+.-|..+. +.|...- ....-.........|+...|...|+++-.....|.... +-..-.-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~le-ktg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLE-KTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34445555555555554 3333211 11111223344455555555555555544322222200 01111122334455
Q ss_pred HHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 018924 136 KDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181 (349)
Q Consensus 136 ~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 181 (349)
+++.....+ ....+.+.-...-..|.-+-.+.|++..|.+.|..+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 555444444 2222222222223334444445555555555555443
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.23 E-value=0.77 Score=33.11 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96 (349)
Q Consensus 17 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 96 (349)
..++..+.+.+.+......++.+...+. .+...++.++..|++.. .++....+.. . .+.......+..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~----~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN----K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh----c---cccCCHHHHHHHHHH
Confidence 3455556666666666666666666552 45556666666666543 2223333331 0 111111225555555
Q ss_pred cCcHHHHHHHHHHH
Q 018924 97 VGLLDKALAMLKKS 110 (349)
Q Consensus 97 ~g~~~~a~~~~~~~ 110 (349)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666655554
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.17 E-value=0.4 Score=38.81 Aligned_cols=78 Identities=9% Similarity=0.016 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH-----hhcCCcchhhH
Q 018924 49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-----QIKGAKVNSAY 123 (349)
Q Consensus 49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 123 (349)
.++..++..+...|+++.+...++++. .... -+...|..++.+|.+.|+...|+..|+++.+ .|+.|.. .+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li-~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~-~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLI-ELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP-ELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH-hcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH-HHH
Confidence 466777777778888888888888777 5444 6777778888888888888888888877754 4666766 666
Q ss_pred HHHHHH
Q 018924 124 NVILTL 129 (349)
Q Consensus 124 ~~l~~~ 129 (349)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 655555
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=1.3 Score=34.86 Aligned_cols=206 Identities=11% Similarity=0.036 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..|..-..+|-...++++|...+.+..+. .+.+. ..|+ ...+ ++.|.-+.+ .....+.-...|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnr-slfh-AAKa------yEqaamLak-e~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR-SLFH-AAKA------YEQAAMLAK-ELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc-cHHH-HHHH------HHHHHHHHH-HHHHhHHHHHHHHHHHHHH
Confidence 33555566777777888777777666542 22222 2222 1111 222222222 0011111123355566667
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH---cC--cccchhhHHHHHHHHhcCCC
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL---KG--REIHVKSWYYLATGYRQNSQ 239 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~~~ 239 (349)
...|.++.|-..+++.-+. ....++++|.++|++... .+ .+.-...+..+-..+.+..+
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777666666554321 123345555555554332 11 01112234455566777778
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCCchhHHHHh-hhhhcC-c
Q 018924 240 IHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDK----GFIPTDLQDKLL-DNVQNG-K 312 (349)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~l~-~~~~~g-~ 312 (349)
+++|-..+.+-...... ..-.|+. ..|...|-.+....|+..|+..++..... +..+..+...|+ +|-... +
T Consensus 166 f~Eaa~a~lKe~~~~~~-~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADK-CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHH-HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHH
Confidence 88777666553321000 0112222 33555556667778999999999886554 224556788888 887766 5
Q ss_pred chHHH
Q 018924 313 SNLET 317 (349)
Q Consensus 313 ~a~~~ 317 (349)
++.++
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 44443
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.01 E-value=0.89 Score=32.63 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=58.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCCC-ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc
Q 018924 55 LSAYADASDHEGIDKILTMMEADPNVA-LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (349)
.....+.|++++|.+.|+.+..+.... -...+--.|+.+|.+.|++++|...+++.++..+..+. ..|-..+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 334557899999999999987443332 23455567899999999999999999999987766555 6777777766544
Q ss_pred C
Q 018924 134 G 134 (349)
Q Consensus 134 ~ 134 (349)
.
T Consensus 96 ~ 96 (142)
T PF13512_consen 96 E 96 (142)
T ss_pred H
Confidence 3
No 258
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.44 Score=38.80 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=49.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcC---CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQA---LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 231 (349)
.+...++..-....+++.+...+-+++... ..|+...+. .++. +-.-+++++..++..=+.-|+-||-.+++.+|
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHH-HHccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 334444444444555666666555554321 122222221 2222 22334556666666555666666666666666
Q ss_pred HHHhcCCCHHHHHHHHHHHHHH
Q 018924 232 TGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
..+.+.+++.+|.++...|...
T Consensus 143 D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666655543
No 259
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.85 E-value=0.49 Score=35.75 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHH---cCcccch----hhH
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYD--TRIPNFLIDVYCRNGLLEKAENLVNHEKL---KGREIHV----KSW 227 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~----~~~ 227 (349)
+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+... .+-.++. ..|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 44444455555555555555555444322221 11233344444445555555444443332 1111111 111
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 228 YYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 228 ~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
..+ .+...+++..|-+.|-....
T Consensus 119 ~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 119 EGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHH--HHHHhchHHHHHHHHHccCc
Confidence 111 12345677777777766654
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=94.80 E-value=2.5 Score=36.81 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=94.5
Q ss_pred HHH--HHHHHHHhhc-----CcHHHHHHHHHHHHH-hhcCCcchhhHHHHHHHHhhc---------CCHHHHHHHHHHHH
Q 018924 85 VIY--ATVGNGYGKV-----GLLDKALAMLKKSEE-QIKGAKVNSAYNVILTLYGKY---------GKKDDVLRIWELYK 147 (349)
Q Consensus 85 ~~~--~~li~~~~~~-----g~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 147 (349)
..| ..++.+.... -..+.|..+|.+... +...|+...+|..+..++... .+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 4455554442 235678888888871 124555545665555554322 12233334443333
Q ss_pred hhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc-hhh
Q 018924 148 KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKS 226 (349)
Q Consensus 148 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 226 (349)
.-.+.|......+..+..-.++++.|...|+.....+ +....+|........-+|+.++|.+.+++..+..+..- ...
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 4445666677777777777888999999999888753 22344555555556668999999999988776432211 122
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 018924 227 WYYLATGYRQNSQIHKAVEAMKK 249 (349)
Q Consensus 227 ~~~li~~~~~~~~~~~a~~~~~~ 249 (349)
....+..|+.+ ..+.|+.+|-+
T Consensus 411 ~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCC-chhhhHHHHhh
Confidence 22333355544 45677776654
No 261
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.78 E-value=2.5 Score=36.60 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGI----TYDRYTYCTRLSAYA 59 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~ 59 (349)
|...=+..++.+...|++.++..++++|...=. .-+..+|+.++-.++
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 334446778888999999999999998876433 257777777544443
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=2.2 Score=35.38 Aligned_cols=154 Identities=12% Similarity=-0.030 Sum_probs=81.2
Q ss_pred hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHH----HHHHHHhccCCHH
Q 018924 96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR----NVISSLLKLDDLE 171 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~ 171 (349)
-.|+..+|-..++++.+. .|+.-.+++---.+|...|+.......++.....-.+|...|. ...-++...|.++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345666666666666653 2333256666666666777766666666633333334432222 2223334667777
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc---CcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK---GREIHVKSWYYLATGYRQNSQIHKAVEAMK 248 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 248 (349)
+|++.-++..+.+ +.|.....+....+-..|+..++.++..+-... +...-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777776666654 444445555666666667777766665433321 111111122223334455567777777776
Q ss_pred HHHH
Q 018924 249 KVLA 252 (349)
Q Consensus 249 ~~~~ 252 (349)
.-+-
T Consensus 272 ~ei~ 275 (491)
T KOG2610|consen 272 REIW 275 (491)
T ss_pred HHHH
Confidence 6443
No 263
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.49 Score=38.53 Aligned_cols=105 Identities=9% Similarity=0.035 Sum_probs=72.6
Q ss_pred hCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc
Q 018924 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN---GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD 83 (349)
Q Consensus 7 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 83 (349)
.|.+.++.+-..++..-.+..+++.+...+-++... -..|+... ..+++.| ..-+.++++.++..=. ..|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npI-qYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPI-QYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcc-hhccccc
Confidence 456666666777777777778888888887776543 11222222 2223322 2346778888887777 7888899
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQI 114 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 114 (349)
..+++.+|+.+.+.+++.+|.++.-.|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999888887776653
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.46 E-value=0.96 Score=34.18 Aligned_cols=92 Identities=12% Similarity=-0.015 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcch------h
Q 018924 50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN------S 121 (349)
Q Consensus 50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~ 121 (349)
.+..+...|++.|+.+.|.+.|.++. +....+. ...+-.+|......+++..+.....+........... .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56666677777777777777777766 4443332 2334556666667777776666666654432221110 1
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHH
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+|..+ .+...+++..|-+.|-
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHH
Confidence 12222 2334567777777665
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.45 E-value=1.8 Score=33.53 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=100.6
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHH
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 176 (349)
.|-+.-|.--|.+... +.|+.+.+||-|.--+...|+++.|.+.|+....-.+....+...-.-++.-.|++..|.+-
T Consensus 78 lGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH
Confidence 3444445555555544 56666678998888888999999999999833332232233332333334456888888877
Q ss_pred HHHHHhcCCCCCcchHHHH-HHHHHhcCcHHHHHHHHH-HHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924 177 FEEWESQALCYDTRIPNFL-IDVYCRNGLLEKAENLVN-HEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 254 (349)
+-..-+.. +.|+ |.+| +-.--+.-++.+|..-+. +... .|..-|...|..|.- |++. ...+++++...
T Consensus 156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~- 225 (297)
T COG4785 156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD- 225 (297)
T ss_pred HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-
Confidence 76665543 2222 2221 111122345566655443 3333 344555554444322 2221 13344444432
Q ss_pred cccccCCCC-------HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 255 QTLVKWKPS-------VESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 255 ~~~~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
-.-+ ..||-.+.+.+...|+.++|..+|+......+
T Consensus 226 -----a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 -----ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred -----ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1211 35666677778888999999999988876643
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.44 E-value=2 Score=34.14 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=43.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRI---PNFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
.+.+.|.+.|.+..|..-+++|.+. .+.+..+ .-.+..+|...|-.++|...-.-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 4567888999999999999988876 3333333 445777888889888888876666553
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.44 E-value=0.11 Score=27.21 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=13.7
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHH
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKS 110 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~ 110 (349)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445566666666666666666653
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.42 E-value=3.2 Score=36.41 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=67.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc---------------------
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA--------------------- 76 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------- 76 (349)
.+|.-.-+..+.+.-++.=.+..+. .||-.+.-.++ +--......++.+++++..+
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3445555666666666666665553 34433222221 11223445666666655431
Q ss_pred --CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 018924 77 --DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY 146 (349)
Q Consensus 77 --~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (349)
..+..|-..+-..|..++-+.|+.++|++.|++|.+..+..+...+...|+.++...+.+.++..++...
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 0011111112234556666777777777777777664433333346667777777777777777777743
No 269
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=1.7 Score=40.47 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=8.4
Q ss_pred HhhcCcHHHHHHHHHHH
Q 018924 94 YGKVGLLDKALAMLKKS 110 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~ 110 (349)
+.+.|++++|...|-+.
T Consensus 378 Ly~Kgdf~~A~~qYI~t 394 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIET 394 (933)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 34455555555555443
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=1.5 Score=32.52 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHH-HH--
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWV-IY-- 87 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~-- 87 (349)
+...|-.-++ +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-....+ |... -.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHH
Confidence 4455665555 467888999999999999887542222 2223344567889999999999999733333 4332 11
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
.--...+...|.+++.....+.+...+..... .+-..|.-+-.+.|++.+|.+.|.
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~-sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRH-SAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHH-HHHHHHhHHHHhccchHHHHHHHH
Confidence 12234567889999998888887654433333 566788888889999999999999
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.37 E-value=0.13 Score=26.98 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEME 40 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~ 40 (349)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777777643
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.32 E-value=1.3 Score=31.28 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=25.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924 161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220 (349)
Q Consensus 161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 220 (349)
+.+....|.-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-++|+
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344444555555555555544322 44444445555555555555555555555555544
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.29 E-value=4.2 Score=37.21 Aligned_cols=189 Identities=14% Similarity=0.048 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHH-HhhcCCHHHHHHHHH-HHH----hhccCChhhHHHHHHHHhccC-----
Q 018924 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTL-YGKYGKKDDVLRIWE-LYK----KAVKVLNNGYRNVISSLLKLD----- 168 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~-~~~----~~~~~~~~~~~~li~~~~~~~----- 168 (349)
...|.+.++...+.|........=.....+ +....+.+.|+.+|+ ... ....-+......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 457888888877655322110111111222 445678899999998 433 111113345666777776643
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh--cCCCHHHHHH
Q 018924 169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCR-NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR--QNSQIHKAVE 245 (349)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~ 245 (349)
+.+.|..++...-+.| .|+....-..+..... ..+...|.++|....+.|.. +...+..++.... ...+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 6677999998888877 4555443222222222 24578999999999888753 2222222222211 2347888999
Q ss_pred HHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 297 (349)
++++..+. + .|-..--...+..+.. ++.+.+.-.+..+...+...
T Consensus 386 ~~k~aA~~-----g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 386 YYKKAAEK-----G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHc-----c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 99998876 5 4432222233333444 67777766666666554433
No 274
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.25 E-value=3.6 Score=36.26 Aligned_cols=179 Identities=15% Similarity=0.130 Sum_probs=123.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
|....-+++..+.++..++-...+..+|..-| -+...|..++.+|... ..++-..+|+++. +..+ .|...-..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~v-e~df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLV-EYDF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHH-Hhcc-hhHHHHHHHH
Confidence 55666788889999999999999999999865 3678899999999888 5577788999888 6666 4444445566
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCC----cchhhHHHHHHHHhhcCCHHHHHHHHH--HHHhhccCChhhHHHHHHHHh
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGA----KVNSAYNVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLL 165 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~li~~~~ 165 (349)
..|-+ ++.+.+...|.++..+-+.. .....|..+...- ..+.+..+.+.. ....|...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66655 88889999998887653321 1113565555431 345566665555 233344445566777778888
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 018924 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199 (349)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 199 (349)
...++++|.+++..+.+.. ..|...-..++..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 9999999999999887764 33444444444443
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.18 E-value=2.3 Score=33.80 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=38.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
+..-|.+.|.+..|..-++.|++.+++.. -....+-.+..+|...|-.++|...-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~---~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTS---AVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34556777777777777777776422111 12344556666777777777777766665554
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=2.6 Score=34.26 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=25.0
Q ss_pred HHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 018924 129 LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180 (349)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 180 (349)
.....|++.+|...|+......+-+...-..++.+|...|+.+.|..++..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3444555555555555222222222333444555555555555555555544
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.03 E-value=3 Score=34.55 Aligned_cols=127 Identities=12% Similarity=0.101 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHh--c----CcHHHHHHHHHHHHHcCcc---cchhhHHHHHHHHhcCCC---
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCR--N----GLLEKAENLVNHEKLKGRE---IHVKSWYYLATGYRQNSQ--- 239 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~--- 239 (349)
+...+++.|.+.|+..+..+|-+....... . ....+|..+|+.|++..+- ++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666555444332222111 1 1245666677777665431 233344444332 2222
Q ss_pred -HHHHHHHHHHHHHHhcccccCCCC-H-HHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCC-CCchhHHHHh
Q 018924 240 -IHKAVEAMKKVLAAYQTLVKWKPS-V-ESLAACLDYFKDEGD--IGGAENFIELLNDKGF-IPTDLQDKLL 305 (349)
Q Consensus 240 -~~~a~~~~~~~~~~~~~~~~~~p~-~-~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~-~~~~~~~~l~ 305 (349)
.+.+..+|+.+.+. |+..+ . ...+.++..+..... ...+.++++.+.+.+. .....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~-----~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADA-----GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHh-----CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 23455556665554 55442 2 222333322211111 3355566666666655 3334444444
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.03 E-value=5.6 Score=38.83 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Q 018924 82 LDWVIYATVGNGYGKVG--LLDKALAMLKKSEE 112 (349)
Q Consensus 82 ~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~ 112 (349)
|+ .-.-.+|..|.+.+ .++.|+....+...
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 54 33346788888887 77777777776664
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=5.5 Score=37.32 Aligned_cols=207 Identities=10% Similarity=0.058 Sum_probs=124.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLS----AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG 93 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 93 (349)
.-|+.+.+...++-|+.+- +..+. |..+...+.. -+.+.|++++|...|-+-. . -+.|+. +|.-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LA---k~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI-~-~le~s~-----Vi~k 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLA---KSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI-G-FLEPSE-----VIKK 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHH---HhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc-c-cCChHH-----HHHH
Confidence 3455555666666665553 33333 3334444443 4557899999998887665 2 222332 5677
Q ss_pred HhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 173 (349)
|....++..--..++.+.+.|..... .-..|+.+|.+.++.+.-.++.+....|.. ..-....+..|.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~d--httlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSD--HTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccch--hHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHH
Confidence 88888888888999999998875544 678899999999999998888872222221 11245666777777777777
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
..+-..... +......+ +-..+++++|.+.+..+.-...-+....|...+- ...+++-..++-+...
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILIELIT 549 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHHHHHh
Confidence 665544322 23333333 4456889999999887653222223333322221 2345555555544444
No 280
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.93 E-value=4.2 Score=35.87 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=112.5
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 018924 121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY 199 (349)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 199 (349)
...-+++..+..+..+.-+..+.. +...| .+...|..++++|... ..+.-..+++.+.+..+ .|+..-..|..-|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 567778888888877777777777 44333 4566788888888877 55677788888777543 2333344444444
Q ss_pred HhcCcHHHHHHHHHHHHHcCccc--c---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHH
Q 018924 200 CRNGLLEKAENLVNHEKLKGREI--H---VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF 274 (349)
Q Consensus 200 ~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 274 (349)
- .++.+.+...|..+...=++. + ...|.-+... -..+.+....+..++... .|..--...+.-+-.-|
T Consensus 143 E-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~----lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 143 E-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK----LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred H-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh----hccchHHHHHHHHHHHh
Confidence 4 478888888888776532210 1 1244444431 134666666666666543 24444556666677788
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 275 KDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 275 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
....++++|.+++..+.+.+..+...-..++
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i 246 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEII 246 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHH
Confidence 8999999999999988887655555544454
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.86 E-value=2.4 Score=32.94 Aligned_cols=222 Identities=17% Similarity=0.071 Sum_probs=157.2
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-CCCccHHHHHHHHHHHhhcCcHHHH
Q 018924 26 TGNFEKLDSLMHEMEENGITY-DRYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKA 103 (349)
Q Consensus 26 ~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a 103 (349)
.+....+...+.......... ....+......+...+++..+...+.... .. ........+......+...++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL-ELELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH-hhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence 356666666666666553221 35677778888889999999998888876 31 3335566677788888888999999
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHH-HHhhcCCHHHHHHHHHHHHhhccC----ChhhHHHHHHHHhccCCHHHHHHHHH
Q 018924 104 LAMLKKSEEQIKGAKVNSAYNVILT-LYGKYGKKDDVLRIWELYKKAVKV----LNNGYRNVISSLLKLDDLESAEKIFE 178 (349)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~ 178 (349)
.+.+.........+. ........ .+...|+++.|...+..... ..| ....+......+...++.+.+...+.
T Consensus 115 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 115 LELLEKALALDPDPD--LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHcCCCCcc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 999999877443332 23444444 78899999999999994333 333 22334444445677889999999999
Q ss_pred HHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 179 EWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 179 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
...+.. .. ....+..+...+...++++.|...+......... ....+..+...+...+..+.+...+......
T Consensus 192 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 988753 23 3567778888899999999999999998885422 2334444555555777899999999998864
No 282
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=2.8 Score=33.13 Aligned_cols=214 Identities=16% Similarity=0.119 Sum_probs=122.9
Q ss_pred CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc
Q 018924 44 ITYDR----YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119 (349)
Q Consensus 44 ~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 119 (349)
..||. ..|.....+|-..+++++|...+.+.. + +.+.+...| -....++.|.-+.+++.+ -+..
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~-~-~yEnnrslf-------hAAKayEqaamLake~~k---lsEv 90 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKAS-K-GYENNRSLF-------HAAKAYEQAAMLAKELSK---LSEV 90 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHH-H-HHHhcccHH-------HHHHHHHHHHHHHHHHHH---hHHH
Confidence 45554 356666777888889999888777664 2 222222222 123445667777777765 2333
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHH---HHHhhccCChh--hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 018924 120 NSAYNVILTLYGKYGKKDDVLRIWE---LYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194 (349)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (349)
...|+-....|...|.++.|-..++ ....++.|+.. .|..-+...-..++...|.++ +..
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk 155 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGK 155 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHH
Confidence 3578888888999999888877777 23334444431 222222222233333333322 334
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCc----ccch-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKLKGR----EIHV-KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA 269 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 269 (349)
.-..+.+..++++|-..+.+-..... -++. ..|-..|-.+....++..|...++.-.+. +...-.-+..+...
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi--p~f~~sed~r~len 233 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI--PAFLKSEDSRSLEN 233 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC--ccccChHHHHHHHH
Confidence 44556666777776665544332110 1111 23555566677778999999999885543 00011225678888
Q ss_pred HHHHHHhcCChhhHHHHH
Q 018924 270 CLDYFKDEGDIGGAENFI 287 (349)
Q Consensus 270 ll~~~~~~g~~~~a~~~~ 287 (349)
|+.+| ..||.+++..++
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 88887 678888887765
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.48 E-value=2.4 Score=31.56 Aligned_cols=135 Identities=15% Similarity=0.133 Sum_probs=77.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 018924 34 SLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ 113 (349)
Q Consensus 34 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 113 (349)
+.+..+.+.+++|+...+..++..+.+.|++.....+ . ..++-+|.......+-.+. +....+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----l-q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----L-QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----H-hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 4455556678888888888888888888886654433 3 3344455444333332222 2233344444444332
Q ss_pred hcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018924 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ 183 (349)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 183 (349)
.. ..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..+++-..+.
T Consensus 88 ---L~--~~~~~iievLL~~g~vl~ALr~ar~~~~---~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LG--TAYEEIIEVLLSKGQVLEALRYARQYHK---VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hh--hhHHHHHHHHHhCCCHHHHHHHHHHcCC---cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 2566777788888888888888762111 22223456677777777776666666655543
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.31 E-value=2.4 Score=31.13 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=7.0
Q ss_pred hhcCcHHHHHHHHHHH
Q 018924 95 GKVGLLDKALAMLKKS 110 (349)
Q Consensus 95 ~~~g~~~~a~~~~~~~ 110 (349)
...|++++|.++|+++
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3444444444444444
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.30 E-value=0.2 Score=25.66 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=20.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
.+|..+...|...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35667777777788888888888777743
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.27 E-value=0.65 Score=30.52 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
+.-++.+-++.+... .+.|++....+.+++|.+.+|+..|.++|+-++.+...+...|..++
T Consensus 22 D~we~rr~mN~l~~~-----DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGY-----DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhcc-----ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 334455555555544 66677777777777777777777777777666644222333454443
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.18 E-value=0.12 Score=26.70 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCcchhhHHHHHHHHhhcCCHHHHH
Q 018924 116 GAKVNSAYNVILTLYGKYGKKDDVL 140 (349)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (349)
.|+...+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4555466666777777777666664
No 288
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.07 E-value=5.6 Score=34.82 Aligned_cols=53 Identities=9% Similarity=-0.085 Sum_probs=24.1
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
...|+++.+...+...... +.....+..++++...+.|+++.|...-..|...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 3445555555544443332 1222334444455555555555555555444443
No 289
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.02 E-value=1.1 Score=39.06 Aligned_cols=78 Identities=9% Similarity=-0.045 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924 52 CTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129 (349)
Q Consensus 52 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (349)
..+..++-+.|+.++|++.+++|.++........+...|+.++...+.+.++..++.+..+.....+....|+..+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 345556668899999999999997333332344566789999999999999999999976533333333566665543
No 290
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.72 E-value=3.9 Score=33.27 Aligned_cols=145 Identities=11% Similarity=0.120 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh-cC-cHHHHHHHHHHHHHh-hcCCcchhhHHHHH
Q 018924 51 YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK-VG-LLDKALAMLKKSEEQ-IKGAKVNSAYNVIL 127 (349)
Q Consensus 51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~ 127 (349)
|..++. +...+.+|+++|+....+..+--|..+...+++.... .+ ....-.++.+-+... +..++. .+...++
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~-~vi~~Il 209 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTR-NVIISIL 209 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCCh-hHHHHHH
Confidence 555553 3344566777777543122344566666666665554 22 222233333333322 234445 6777888
Q ss_pred HHHhhcCCHHHHHHHHHHHHh--hccCChhhHHHHHHHHhccCCHHHHHHHHHH-----HHhcCCCCCcchHHHHHHHH
Q 018924 128 TLYGKYGKKDDVLRIWELYKK--AVKVLNNGYRNVISSLLKLDDLESAEKIFEE-----WESQALCYDTRIPNFLIDVY 199 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 199 (349)
..+++.++|..-.++++.... +..-|...|..+|..-...|+..-..++.++ +.+.++..+...-..+-..+
T Consensus 210 ~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 210 EILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888888888888888883333 2445667788888888888888777776654 23455555555444444433
No 291
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.69 E-value=0.64 Score=30.89 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=24.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 259 KWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 259 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
.+.|++....+.+++|.+.+++..|.++|+-++.+-.+....|..++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 55666666666666666666666666666666555322222454444
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.65 E-value=0.2 Score=25.85 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=11.2
Q ss_pred chhhHHHHHHHHhcCCCHHHHH
Q 018924 223 HVKSWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~a~ 244 (349)
|...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4445555555555555555543
No 293
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.63 E-value=6.4 Score=34.23 Aligned_cols=259 Identities=10% Similarity=0.032 Sum_probs=140.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH--HH
Q 018924 23 YYKTGNFEKLDSLMHEMEENGITYD------RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN--GY 94 (349)
Q Consensus 23 ~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~ 94 (349)
+-+.+++++|..+|.++-+.- .-+ ...-+.++++|.. ++++.....+..+.+..|- ..|-.|.. .+
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~----s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK----SAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC----chHHHHHHHHHH
Confidence 346789999999999987652 222 2234556666654 5677777777777633332 22333333 34
Q ss_pred hhcCcHHHHHHHHHHHHHh--hcCC------------cchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhcc----CChh
Q 018924 95 GKVGLLDKALAMLKKSEEQ--IKGA------------KVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK----VLNN 155 (349)
Q Consensus 95 ~~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~----~~~~ 155 (349)
.+.+++++|.+.+..-.+. +-.+ +. ..=+..+.++...|++.++..+++ +...-.+ .+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df-~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF-FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 5678899999888776554 1111 11 112566778889999999999998 5444444 6778
Q ss_pred hHHHHHHHHhccC--------C-------HHHHHHHHHHHHhc------CCCCCcchHHHHHHHHHhc--CcHHHHHHHH
Q 018924 156 GYRNVISSLLKLD--------D-------LESAEKIFEEWESQ------ALCYDTRIPNFLIDVYCRN--GLLEKAENLV 212 (349)
Q Consensus 156 ~~~~li~~~~~~~--------~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~ 212 (349)
+|+.++-.+.++= . ++.+.-+..++... .+-|.......++....-. .+..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8887665554321 1 11111111222110 1122222222222221111 1111122222
Q ss_pred HHHHHcCcccchh-hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC----CHHHHHHHHHHHHhcCChhhHHHHH
Q 018924 213 NHEKLKGREIHVK-SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP----SVESLAACLDYFKDEGDIGGAENFI 287 (349)
Q Consensus 213 ~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~ 287 (349)
+.-...-+.|+.. ....++..+.+ +.+++..+.+.+... .+.+ -..+|..++....+.++...|.+.+
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~-----~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS-----KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2222333334432 23344444444 556666665555543 2222 2467888888888999999999988
Q ss_pred HHHhhCCC
Q 018924 288 ELLNDKGF 295 (349)
Q Consensus 288 ~~~~~~~~ 295 (349)
..+...+|
T Consensus 322 ~lL~~ldp 329 (549)
T PF07079_consen 322 ALLKILDP 329 (549)
T ss_pred HHHHhcCC
Confidence 87776554
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.49 E-value=8.5 Score=35.29 Aligned_cols=179 Identities=14% Similarity=-0.030 Sum_probs=107.3
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHH--HHH-HhhcCcHHHHHHHHHHHHH-------hhcCCcchhhHHHHHHHHhhc
Q 018924 64 HEGIDKILTMMEADPNVALDWVIYATV--GNG-YGKVGLLDKALAMLKKSEE-------QIKGAKVNSAYNVILTLYGKY 133 (349)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 133 (349)
...+.++++... +.|. ......... ..+ +....+.+.|+..|+...+ .+ .. .+...+..+|.+.
T Consensus 228 ~~~a~~~~~~~a-~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~-~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAA-KLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LP-PAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHH-hhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CC-ccccHHHHHHhcC
Confidence 456888888877 4444 222222222 333 5567899999999999876 33 22 4567788888774
Q ss_pred C-----CHHHHHHHHHHHHhhccCChhhHHHHHHHHhc-cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH----hcC
Q 018924 134 G-----KKDDVLRIWELYKKAVKVLNNGYRNVISSLLK-LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC----RNG 203 (349)
Q Consensus 134 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 203 (349)
. +.+.|..++......-.|+....-..+..... ..+...|.++|...-+.|.. .. +-.+..+|. ...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCcCC
Confidence 3 66779999985444444555433333222222 24678999999999988842 22 222333332 234
Q ss_pred cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
+.+.|..++++..+.|. |....-...+..+.. ++++.+.-.+..+.+.
T Consensus 379 ~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred CHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence 68999999999999873 222222223333433 6666666666665554
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.34 E-value=1.3 Score=29.22 Aligned_cols=44 Identities=11% Similarity=-0.087 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
+.+-++.+....+.|++....+.+.+|-+.+++..|.++|+..+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555544
No 296
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.19 E-value=2.4 Score=28.31 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=19.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 33 DSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 33 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
.+-++.+...++-|++.+..+.+++|-+.+++..|.++++.++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344444445555555555555555555555555555444
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.18 E-value=0.34 Score=24.62 Aligned_cols=28 Identities=36% Similarity=0.707 Sum_probs=18.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
.|..+...+...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666677777777777777777643
No 298
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.98 E-value=13 Score=36.46 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=64.4
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhh----HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID 197 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 197 (349)
.|.-.++.--+.|-+.+|+.++. |+... |.+....+.....+++|--.|+..-+ ...-+.
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~-------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~ 973 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYK-------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALK 973 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheec-------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHH
Confidence 44555555555666666666655 44433 33444444556666666666654322 123456
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
+|..+|++.+|..+..++....-. -..+-..|+.-+...+++-+|-++..+...
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 677777777777776665531100 111225566777777887777777777653
No 299
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.74 E-value=3.4 Score=29.81 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCCCC-----CccHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHhhcCCcchhhHH
Q 018924 51 YCTRLSAYADASDHEGIDKILTMMEADPNV-----ALDWVIYATVGNGYGKVGL-LDKALAMLKKSEEQIKGAKVNSAYN 124 (349)
Q Consensus 51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (349)
.+.++.-.+..+++.....+++.+. .... ..+...|.+++.+.++... ---+..+|.-+++.+.+.+. .-|.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~-~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~-~dy~ 119 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLH-FLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTP-SDYS 119 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHH-HhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCH-HHHH
Confidence 4455555455555555555555442 1100 1344556666666655554 34455566666655555555 5666
Q ss_pred HHHHHHhhc
Q 018924 125 VILTLYGKY 133 (349)
Q Consensus 125 ~l~~~~~~~ 133 (349)
.++.++.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 666665544
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.42 E-value=8.1 Score=32.84 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=28.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
..+.-+.|+++...+........ .++...+..+... +.++.+++...++...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 44566677777744444443322 2234444444432 6677777776666654
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.27 E-value=0.68 Score=24.79 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEE 41 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 41 (349)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777766643
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.25 E-value=3.7 Score=31.39 Aligned_cols=93 Identities=14% Similarity=-0.026 Sum_probs=60.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhccCCh-----hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 018924 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200 (349)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 200 (349)
=.+-+..+|++++|..-|......+++.. +.|..-..+..+.+.++.|..-..+.++.+.. .......-..+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 34456678888888888885555555433 34555666777888888888888777765421 1112222234677
Q ss_pred hcCcHHHHHHHHHHHHHcC
Q 018924 201 RNGLLEKAENLVNHEKLKG 219 (349)
Q Consensus 201 ~~~~~~~a~~~~~~~~~~~ 219 (349)
+..+++.|..=|+.+.+..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 7788888888888888754
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.16 E-value=0.73 Score=24.67 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666543
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.10 E-value=4.8 Score=29.62 Aligned_cols=51 Identities=16% Similarity=0.060 Sum_probs=22.9
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCcchH-HHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 166 KLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
+.++.+.+..++..+.-. .|..... ..-...+...|++.+|..+|+.+...
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 444555555555555442 2222111 11122234555566666666555443
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.96 E-value=5.2 Score=29.79 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=17.1
Q ss_pred HHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHH
Q 018924 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDK 102 (349)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 102 (349)
.++.+. ..+++|+...|..+++.+.+.|++..
T Consensus 16 YirSl~-~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLN-QHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 333444 44555555566666666666665443
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.94 E-value=1 Score=22.86 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555566666666666666665554
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=6.9 Score=30.82 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
.++++|+..|+..-+-+........-...+.-+...-+..+++.+|..+|+++.....
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666665543221112122222233333344677889999999988877644
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.51 E-value=0.28 Score=35.55 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=80.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV 97 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 97 (349)
.+|+.+.+.+.+......++.+...+...+....+.++..|++.++.++..++++... +..+ ..++..|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~-----~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL-----DKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-----THHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-----HHHHHHHHhc
Confidence 3567777888999999999999987666678889999999999988787777776332 2222 2366777777
Q ss_pred CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924 98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD 169 (349)
Q Consensus 98 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (349)
|.+++|.-++.++... ...+..+...++++.|.+.+. -.++...|..++..|...+.
T Consensus 84 ~l~~~a~~Ly~~~~~~----------~~al~i~~~~~~~~~a~e~~~-----~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNH----------DEALEILHKLKDYEEAIEYAK-----KVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTH----------TTCSSTSSSTHCSCCCTTTGG-----GCSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccH----------HHHHHHHHHHccHHHHHHHHH-----hcCcHHHHHHHHHHHHhcCc
Confidence 7777777777664221 111111333444444443332 12345566777766665543
No 309
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.18 E-value=9.7 Score=31.62 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh--cC----CHHHHHHHHH-HHHhhcc---CChhhHHHHHHHHhccCC
Q 018924 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK--YG----KKDDVLRIWE-LYKKAVK---VLNNGYRNVISSLLKLDD 169 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~-~~~~~~~---~~~~~~~~li~~~~~~~~ 169 (349)
+++...+++.|.+.|...+. .+|-+....... .. ....|..+|+ |.....- ++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~-y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSE-YLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccC-hHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 34556677777777776666 555443322222 22 2345667777 4433321 444555555443 3333
Q ss_pred ----HHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhc-Cc--HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924 170 ----LESAEKIFEEWESQALCYDTRI-PNFLIDVYCRN-GL--LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 170 ----~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 241 (349)
.+.++.+|+.+.+.|+..+... +.+-+-+++.. .. ..++.++++.+.+.|+++....|..+.-...-.+..+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence 2456677777777676554432 22222222221 11 4577778888888888877766665544332333332
Q ss_pred HHHHHHHHHHH
Q 018924 242 KAVEAMKKVLA 252 (349)
Q Consensus 242 ~a~~~~~~~~~ 252 (349)
+..+-+.++.+
T Consensus 235 ~~~~~i~ev~~ 245 (297)
T PF13170_consen 235 KIVEEIKEVID 245 (297)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.01 E-value=7.1 Score=29.98 Aligned_cols=79 Identities=10% Similarity=0.091 Sum_probs=52.8
Q ss_pred HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh---hcCCcchhhHHHHHHHHhhcC
Q 018924 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ---IKGAKVNSAYNVILTLYGKYG 134 (349)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 134 (349)
..+.|+ +.|.+.|-++. ..+.--+......|...|. ..+.+++..++.+..+. +..+++ ..+.+|++.+.+.|
T Consensus 117 Wsr~~d-~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~-eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNP-EILKSLASIYQKLK 192 (203)
T ss_pred hhccCc-HHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHhc
Confidence 345555 55777777777 4444355555555555555 66788888888777653 224555 78888999998888
Q ss_pred CHHHHH
Q 018924 135 KKDDVL 140 (349)
Q Consensus 135 ~~~~a~ 140 (349)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 888774
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.88 E-value=4.6 Score=30.97 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH---cCcccchhhHHHHHHHHhcCCCHHHH
Q 018924 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL---KGREIHVKSWYYLATGYRQNSQIHKA 243 (349)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a 243 (349)
+.|.+.|-.+...+.--++.....|...| ...+.+++..++.+..+ .+-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555555554444333333333333222 24455555555554443 12234455555555555555555554
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.29 E-value=1.1 Score=22.55 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
..+..+...+...|++++|.+.+++..+..|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3566777888999999999999998877644
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.82 E-value=0.12 Score=37.43 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=23.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924 161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213 (349)
Q Consensus 161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 213 (349)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444444444443333334444555555555544444444443
No 314
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.28 E-value=3.1 Score=32.30 Aligned_cols=55 Identities=16% Similarity=-0.029 Sum_probs=25.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 018924 54 RLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS 110 (349)
Q Consensus 54 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 110 (349)
-++.+.+.+.+++++...++-. +.+. .+..+-..++..+|-.|++++|..-++-.
T Consensus 7 t~seLL~~~sL~dai~~a~~qV-kakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQV-KAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHH-hcCC-ccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444445555555555544433 2222 23333334555555555555555444443
No 315
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.25 E-value=9.8 Score=29.07 Aligned_cols=123 Identities=11% Similarity=-0.019 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH---
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC--TRLSAYADASDHEGIDKILTMMEADPNVALDWVIY--- 87 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 87 (349)
...|..++.... .+.+ +.....+.+...+....-.++. .+...+...|++++|..-++... . . |....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l-~--~-t~De~lk~l 127 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL-A--Q-TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-c--c-chhHHHHHH
Confidence 456777777654 4444 6666777777653221222232 23556788999999999998776 2 2 222222
Q ss_pred --HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 88 --ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 88 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
-.|.......|.+|+|+.+++.....+.. . .....-.+.+...|+-++|..-|+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~-~~~elrGDill~kg~k~~Ar~ay~ 183 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWA--A-IVAELRGDILLAKGDKQEARAAYE 183 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHH--H-HHHHHhhhHHHHcCchHHHHHHHH
Confidence 34667888899999999999998764332 2 345667788999999999999999
No 316
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.10 E-value=19 Score=32.68 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=51.1
Q ss_pred hcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHH
Q 018924 132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL 211 (349)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 211 (349)
+.|+++.|.++.... .+..-|..|.++....+++..|.+.|..... |..|+..+...|+-+....+
T Consensus 649 ~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 445555555544311 1233466666666666666666666654432 33455555556665555554
Q ss_pred HHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924 212 VNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249 (349)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 249 (349)
-....+.|.. |...-+|...|+++++.+++.+
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 4444444422 2233344556666666666554
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.98 E-value=1.8 Score=21.59 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=16.5
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHh
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQ 113 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~ 113 (349)
.+..++.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3555666667777777777776654
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.63 E-value=7.8 Score=30.20 Aligned_cols=60 Identities=13% Similarity=-0.025 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018924 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182 (349)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 182 (349)
.+.-++.+.+.+...+++...+...+.-+.|..+-..+++.+|-.|++++|..-++..-+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344555666667777777666633333344445555666667777777777666555443
No 319
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.31 E-value=12 Score=30.43 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=46.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhh-cCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHh-
Q 018924 54 RLSAYADASDHEGIDKILTMME-ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG- 131 (349)
Q Consensus 54 ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 131 (349)
-|.+++..+++.++..+.-+-- .-..++| .+...-|-.|.+.|....+.++-..-....-.... .-|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~l-p~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSL-PEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCc-hhhHHHHHHHHH
Confidence 3666777777777665543332 1112323 23334455567777777666666655543222222 34555555544
Q ss_pred ----hcCCHHHHHHHHH
Q 018924 132 ----KYGKKDDVLRIWE 144 (349)
Q Consensus 132 ----~~~~~~~a~~~~~ 144 (349)
-.|.+++|+++..
T Consensus 166 ~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHhccccHHHHHHHHh
Confidence 3577777776663
No 320
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.10 E-value=7.7 Score=34.96 Aligned_cols=151 Identities=16% Similarity=0.090 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHhcC--ChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhH
Q 018924 46 YDRYTYCTRLSAYADAS--DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123 (349)
Q Consensus 46 p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (349)
|+..+..+++.-....- .-+-+-.++..|. . ...|-+.+.|...-.+--.|+...|...+.......+.... +..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-VPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc-ccH
Confidence 56666555554333211 1223444555554 3 44466666554444444568889999888877654444444 566
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 018924 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200 (349)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 200 (349)
-.|.+...+.|...+|..++.....-....+.++..+.+++.-..+.+.|.+.|+...+.. +.+...-+.|...-|
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 7788888888888888888873333334455677888889999999999999999888753 334555555554444
No 321
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.48 E-value=12 Score=28.29 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
+++|.+.|+++. ...|+..+|..-+.... +|-++..++.+.
T Consensus 96 F~kA~~~FqkAv-------~~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAV-------DEDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHH-------HH-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-------hcCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 555666666665 45899999988887653 355555555554
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.24 E-value=1.7 Score=21.60 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=12.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
+..++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 334444455555555555555543
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.24 E-value=2.8 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEE 41 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 41 (349)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666677777777777777776654
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.15 E-value=2.9 Score=21.07 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666677777666666654
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.88 E-value=30 Score=32.29 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=38.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc-CCcchhhHHHHHHHHhh-
Q 018924 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKVNSAYNVILTLYGK- 132 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~- 132 (349)
...+.-.|+++.|++.+-+.. ....+.+++...+..|.-.+-.+... ..+..... .+.. .-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~---~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~-ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE---FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPP-LNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHhhc---cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCC-cCHHHHHHHHHHH
Confidence 344556799999998876622 44466777555544443322222211 22222111 1222 467788888876
Q ss_pred --cCCHHHHHHHHH
Q 018924 133 --YGKKDDVLRIWE 144 (349)
Q Consensus 133 --~~~~~~a~~~~~ 144 (349)
..+..+|.++|-
T Consensus 338 F~~td~~~Al~Y~~ 351 (613)
T PF04097_consen 338 FEITDPREALQYLY 351 (613)
T ss_dssp TTTT-HHHHHHHHH
T ss_pred HhccCHHHHHHHHH
Confidence 457778888777
No 326
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.44 E-value=5.5 Score=27.84 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
+..+-++....- .+.|++.....-+++|.+.+|+..|.++|+-++.+-.+....|..++
T Consensus 67 EvrkglN~l~~y-----DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDY-----DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhcc-----ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344444555444 67788888888888888888888888888877766443333455444
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.04 E-value=3.4 Score=22.79 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=12.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
|..+|...|+.+.|..+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555554
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.48 E-value=3.1 Score=22.96 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=14.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEEN 42 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~ 42 (349)
|..+|.+.|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666643
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.20 E-value=25 Score=29.88 Aligned_cols=28 Identities=14% Similarity=0.502 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEE 41 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 41 (349)
+...|.++... +.|+++++...++.+..
T Consensus 30 ~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 30 EYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred hHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 44455555433 77888888887777655
No 330
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=84.00 E-value=29 Score=30.41 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS 325 (349)
Q Consensus 267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~ 325 (349)
...|+.-|...|++.+|.+.++++.--.+.....+.+++ ..-+.| ...+.++++.-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 456777788888888888877776544444555677777 777766 35666666655444
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.77 E-value=14 Score=26.81 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=9.6
Q ss_pred HhhcCcHHHHHHHHHHHHH
Q 018924 94 YGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~ 112 (349)
+...|++++|.++|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 4445555555555555443
No 332
>PF13934 ELYS: Nuclear pore complex assembly
Probab=83.51 E-value=20 Score=28.37 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=60.9
Q ss_pred CCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc
Q 018924 42 NGITYDRYTYCTRLSAYA--DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119 (349)
Q Consensus 42 ~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 119 (349)
.++++. |...+.++. ..+++++|.+.+ . +..+.|+-.. -++.++...|+.+.|..+++... +....
T Consensus 73 f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L---~-~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s 140 (226)
T PF13934_consen 73 FGIPPK---YIKFIQGFWLLDHGDFEEALELL---S-HPSLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSS 140 (226)
T ss_pred hCCCHH---HHHHHHHHHHhChHhHHHHHHHh---C-CCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCC
Confidence 355533 444555544 346666666555 3 4444343332 36777777888888888888753 33333
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHh
Q 018924 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL 165 (349)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (349)
......++.. ..++...+|..+-+......+ ...+..++..+.
T Consensus 141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~--~~l~e~l~~~~~ 183 (226)
T PF13934_consen 141 PEALTLYFVA-LANGLVTEAFSFQRSYPDELR--RRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHhCchhhh--HHHHHHHHHHHH
Confidence 2333444444 667888888887772222211 344555555555
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.34 E-value=44 Score=32.06 Aligned_cols=195 Identities=12% Similarity=0.033 Sum_probs=107.6
Q ss_pred HhhcCcHHHHHHHHHHHHHhhcCCcch------hhHHHHHH-HHhhcCCHHHHHHHHHHHHhhcc-----CChhhHHHHH
Q 018924 94 YGKVGLLDKALAMLKKSEEQIKGAKVN------SAYNVILT-LYGKYGKKDDVLRIWELYKKAVK-----VLNNGYRNVI 161 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~li 161 (349)
.....++++|..+..+....-..|+.. ..|+.+-. .....|+++.|.++.+......+ +....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 445788999999999887654333221 13333332 23457889999998884444333 3445677778
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH-----HHHhcCcH--HHHHHHHHHHHHcCc--c----cchhhHH
Q 018924 162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID-----VYCRNGLL--EKAENLVNHEKLKGR--E----IHVKSWY 228 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~--~~a~~~~~~~~~~~~--~----~~~~~~~ 228 (349)
.+..-.|++++|..+.....+..-..+...+..+.. .+-..|+. ++....|........ + +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999999888776433444444332221 23445633 233333333322100 1 1123344
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHhcccccCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 229 YLATGYRQN-SQIHKAVEAMKKVLAAYQTLVKWKPSVE--SLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 229 ~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
.+..++.+. +...++..-+.--... ...|-.. .+..|.......|+.++|...+.++...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~-----~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVY-----TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhc-----ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445555441 1222222222222211 1122111 2236777888999999999999888775
No 334
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.95 E-value=25 Score=28.88 Aligned_cols=135 Identities=11% Similarity=0.072 Sum_probs=90.2
Q ss_pred cHHHHHHHHHHHHH-hhcCCcchhhHHHHHHHHhh-cCC-HHHHHHHHH-H-HHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924 99 LLDKALAMLKKSEE-QIKGAKVNSAYNVILTLYGK-YGK-KDDVLRIWE-L-YKKAVKVLNNGYRNVISSLLKLDDLESA 173 (349)
Q Consensus 99 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~-~-~~~~~~~~~~~~~~li~~~~~~~~~~~a 173 (349)
.+.+|+++|+.... ..+..+. .+...+++.... .+. ...-.++.+ + ...+..++..+...++..++..+++.+-
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~-evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDE-EVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhhccCcccceeeCh-HHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 35667777773222 2244555 677777777765 222 222223333 1 2334567778888999999999999999
Q ss_pred HHHHHHHHhc-CCCCCcchHHHHHHHHHhcCcHHHHHHHHHH-----HHHcCcccchhhHHHHHHHH
Q 018924 174 EKIFEEWESQ-ALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-----EKLKGREIHVKSWYYLATGY 234 (349)
Q Consensus 174 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~ 234 (349)
.++++..... +...|...|..+|......|+..-...+.++ +...++..+...-..+-..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 9999887655 5667888999999999999999988888764 33455655555544444433
No 335
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.93 E-value=6.4 Score=22.17 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=25.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 018924 22 LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLS 56 (349)
Q Consensus 22 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 56 (349)
...+.|-.+++..+++.|.+.|+..+...|..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567777788888888888887777777776664
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.82 E-value=3.2 Score=19.66 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=5.7
Q ss_pred HHHHhhcCCHHHHHH
Q 018924 127 LTLYGKYGKKDDVLR 141 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~ 141 (349)
...+...|++++|..
T Consensus 8 a~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 8 ARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHcCCHHHHHH
Confidence 333333333333333
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.58 E-value=16 Score=30.60 Aligned_cols=93 Identities=16% Similarity=-0.027 Sum_probs=55.9
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
+-|.+.|.+++|+..|...... .|-.++.+..-..+|.+...+..|..=......-...-...|+.-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 4577888888888888877653 44222677777778888877776665555222211122234444455555556666
Q ss_pred HHHHHHHHHHhcCCCCC
Q 018924 172 SAEKIFEEWESQALCYD 188 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~ 188 (349)
+|.+-++..++ +.|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 66666666655 3454
No 338
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.57 E-value=33 Score=30.07 Aligned_cols=199 Identities=13% Similarity=0.038 Sum_probs=85.5
Q ss_pred hhhhCCCccHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHhhcCCC
Q 018924 4 MRDLGLARTTVV--YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY--TYCTRLSAYADASDHEGIDKILTMMEADPN 79 (349)
Q Consensus 4 m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 79 (349)
+.+.|..|+... ..+.+...++.|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.-. ...
T Consensus 21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~ 95 (413)
T PHA02875 21 LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK-FAD 95 (413)
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCC-ccc
Confidence 345565554432 223444455566654 334444555544422 11223444556677766555554321 100
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchh-hHHHHHHHHhhcCCHHHHHHHHHHHHhhccC---Chh
Q 018924 80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKV---LNN 155 (349)
Q Consensus 80 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~ 155 (349)
-..+.. -.+.+...+..|+.+ +++.+.+.|..++... .-.+.+...+..|+.+-+..+++ .+..+ |..
T Consensus 96 ~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~---~g~~~~~~d~~ 167 (413)
T PHA02875 96 DVFYKD-GMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID---HKACLDIEDCC 167 (413)
T ss_pred ccccCC-CCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCC
Confidence 000000 112334445556654 3333344454443211 11233444556677665555444 22222 222
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI---PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV 224 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 224 (349)
-.+.+. ..+..|+.+ +.+.+.+.|..++... ...++...+..|+.+-+ +.+.+.|..++.
T Consensus 168 g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~Ll~~gad~n~ 230 (413)
T PHA02875 168 GCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----RLFIKRGADCNI 230 (413)
T ss_pred CCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----HHHHHCCcCcch
Confidence 222333 233456654 3444555665554332 12344444556666543 344455655543
No 339
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.27 E-value=23 Score=28.82 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=8.8
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 018924 163 SLLKLDDLESAEKIFEEWE 181 (349)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~ 181 (349)
.|.+.+.+..+.++-....
T Consensus 127 LysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 3444444444444444443
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.22 E-value=12 Score=24.97 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=30.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299 (349)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (349)
.++.+.|++++|..+.+. ...||...|..|-. .+.|-...+..-+.++...+.|...
T Consensus 47 sSLmNrG~Yq~Al~l~~~---------~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p~lq 103 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNK---------LCYPDLEPWLALCE--WRLGLGSALESRLNRLAASGDPRLQ 103 (115)
T ss_pred HHHHccchHHHHHHhcCC---------CCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCHHHH
Confidence 345556666666655544 23556555555443 2555555555555555555444433
No 341
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=82.21 E-value=0.53 Score=27.28 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=32.9
Q ss_pred cchHHHHHHHHhCCCCCCcccccCCCCChhHHHHHhc
Q 018924 312 KSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEKA 348 (349)
Q Consensus 312 ~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~ 348 (349)
++.+.+|+.|..+.+.|....+...+++.+.+.++..
T Consensus 9 ~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~L~~~~~ 45 (55)
T PF07443_consen 9 EELIAVFKQMPSRNYDPKTRKWNFSLEDYSTLMKKVR 45 (55)
T ss_pred HHHHHHHHcCcccccCccceeeeeeHHHHHHHHHHHh
Confidence 5778999999999999999999999999999987753
No 342
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.84 E-value=12 Score=28.65 Aligned_cols=37 Identities=11% Similarity=0.001 Sum_probs=27.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 259 KWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 259 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
...|+..+|..++.++...|+.++|.+..+++....+
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4477888888878888888888888877777776644
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.39 E-value=29 Score=28.57 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY 322 (349)
Q Consensus 267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~ 322 (349)
+......|..+|.+.+|.++.+.....++.+...|-.++ .+...| -.|.+.++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445556789999999999999999999998999999999 999888 47777777774
No 344
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.30 E-value=42 Score=30.49 Aligned_cols=186 Identities=9% Similarity=-0.092 Sum_probs=120.2
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHH
Q 018924 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV 160 (349)
Q Consensus 81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 160 (349)
+++..+|..-+.--.+.|+.+.+.-+|++..-.. ..-. ..|-..+.-....|+.+.|..++.+...-..|+......+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~-efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYD-EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhH-HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 3567788888899999999999999999876421 1122 3676677777777999999988885444333333222222
Q ss_pred H-HHHhccCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCcHHHHHH---HHHHHHHcCcccchhhHHHHHHH--
Q 018924 161 I-SSLLKLDDLESAEKIFEEWESQALCYDT-RIPNFLIDVYCRNGLLEKAEN---LVNHEKLKGREIHVKSWYYLATG-- 233 (349)
Q Consensus 161 i-~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~li~~-- 233 (349)
- ..+-..|+.+.|..+++.+.+.- |+. ..-..-+....+.|..+.+.. ++....... -+....+.+.--
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHH
Confidence 2 22345789999999999998763 443 223334455677888888873 333333211 123333333332
Q ss_pred ---HhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC
Q 018924 234 ---YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG 278 (349)
Q Consensus 234 ---~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 278 (349)
+.-.++.+.|..++.++.+ .+.++...|..++.-+...+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~------~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEAND------ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhh------cCCccHHHHHHHHHHHHhCC
Confidence 2336789999999999986 55667777888887766555
No 345
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.29 E-value=25 Score=27.87 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=7.2
Q ss_pred cCChHHHHHHHHHh
Q 018924 61 ASDHEGIDKILTMM 74 (349)
Q Consensus 61 ~~~~~~a~~~~~~~ 74 (349)
.+.+++|-+++.+.
T Consensus 27 ~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 27 SNKYEEAAELYERA 40 (288)
T ss_pred CcchHHHHHHHHHH
Confidence 34555555555543
No 346
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=81.20 E-value=14 Score=25.01 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924 261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 261 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 294 (349)
.||...|..|-. .+.|-.+++...+.++...+
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 444444444332 25555555555555444443
No 347
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=80.75 E-value=7.9 Score=23.27 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018924 264 VESLAACLDYFKDEGDIGGAENFIELL 290 (349)
Q Consensus 264 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 290 (349)
-.-...+|.++...|++++|.++++.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333344444555555555555544444
No 348
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.74 E-value=25 Score=27.53 Aligned_cols=179 Identities=13% Similarity=0.038 Sum_probs=98.3
Q ss_pred cCChHHHHHHHHHhhcCCCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924 61 ASDHEGIDKILTMMEADPNVALD-WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139 (349)
Q Consensus 61 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (349)
.|-+.-|.--|.+.. .+.|+ ..+||-|.-.+...|+++.|.+.|+...+. .|.-..+...-.-++.--|++.-|
T Consensus 78 lGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 78 LGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhh
Confidence 344444444444444 33343 567888888999999999999999998774 333312222222234456888888
Q ss_pred HHHHHHHHhhccCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHH-HHHHHHhcCcHHHHHHHHHHHH
Q 018924 140 LRIWELYKKAVKVLN--NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF-LIDVYCRNGLLEKAENLVNHEK 216 (349)
Q Consensus 140 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~ 216 (349)
.+-+..--...+.|+ ..|--++. ..-++.+|..-+.+--+ ..|..-|.. ++..|...=..+. +++++.
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~---l~~~~~ 223 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEET---LMERLK 223 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHH---HHHHHH
Confidence 776662222223232 23333332 33456666554433221 223333433 3333332222222 233333
Q ss_pred HcCc------ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 217 LKGR------EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 217 ~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
...- ..=..||-.+.+-+...|+.++|..+|+-.+..
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2110 012347778888999999999999999998865
No 349
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.60 E-value=3.4 Score=19.69 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 227 WYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 227 ~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
|..+...+...|+++.|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555666666666665554
No 350
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=80.58 E-value=9.5 Score=22.91 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
++...++++.+... +-|-.-.-.+|.+|...|++++|.++++.+...
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44445555555432 123444455677788888888888887777653
No 351
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.52 E-value=16 Score=29.37 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018924 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290 (349)
Q Consensus 227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 290 (349)
.-.+..-|...|++++|.++|+.+...+....=..+...+...+..++.+.|+.+....+-=++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677888999999999999986543322223445667777888888888888877664443
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.50 E-value=6.7 Score=24.84 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=33.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHH
Q 018924 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFI 287 (349)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 287 (349)
..++.++|+..|+.+++. ...|. -.++..++.+++..|++.++.++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k-----~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK-----ITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888875 33332 356777888888888888877653
No 353
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.25 E-value=6.9 Score=32.70 Aligned_cols=83 Identities=17% Similarity=0.068 Sum_probs=57.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc----
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN---- 202 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 202 (349)
.+.|.+.|.+++|+..|.....-.+-+.+++..-..+|.+...+..|+.-.......+ ...+.+|.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHHH
Confidence 3567889999999999983333334488889999999999999988887776665422 1244555554
Q ss_pred ---CcHHHHHHHHHHHHH
Q 018924 203 ---GLLEKAENLVNHEKL 217 (349)
Q Consensus 203 ---~~~~~a~~~~~~~~~ 217 (349)
|...+|.+-++....
T Consensus 176 ~~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLA 193 (536)
T ss_pred HHHhhHHHHHHhHHHHHh
Confidence 555666665555555
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.21 E-value=52 Score=30.79 Aligned_cols=184 Identities=11% Similarity=0.028 Sum_probs=104.1
Q ss_pred HHHHHHHHHHH-CCCCCCHH--HHHHHHHHHH-hcCChHHHHHHHHHhhcCCCCCccHH-----HHHHHHHHHhhcCcHH
Q 018924 31 KLDSLMHEMEE-NGITYDRY--TYCTRLSAYA-DASDHEGIDKILTMMEADPNVALDWV-----IYATVGNGYGKVGLLD 101 (349)
Q Consensus 31 ~a~~~~~~m~~-~~~~p~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~ 101 (349)
.|+..++-+.+ ..++|... ++-.+...+. ...+++.|+..+++.. ...-.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~-~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAI-LLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 35566666663 33444333 5555666665 6788999999998764 222112222 1235677777777666
Q ss_pred HHHHHHHHHHHhhcCCcc---hhhHHHH-HHHHhhcCCHHHHHHHHH-HH-Hhh--ccCChhhHHHHHHHHh--ccCCHH
Q 018924 102 KALAMLKKSEEQIKGAKV---NSAYNVI-LTLYGKYGKKDDVLRIWE-LY-KKA--VKVLNNGYRNVISSLL--KLDDLE 171 (349)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~---~~~~~~l-~~~~~~~~~~~~a~~~~~-~~-~~~--~~~~~~~~~~li~~~~--~~~~~~ 171 (349)
|...+++..+.--.... ...+..+ +..+...+++..|.+.++ .. ... ..|-..++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99988887664322112 0222333 222333489999999998 22 222 2233344555555544 556667
Q ss_pred HHHHHHHHHHhcCC---------CCCcchHHHHHHHHH--hcCcHHHHHHHHHHHH
Q 018924 172 SAEKIFEEWESQAL---------CYDTRIPNFLIDVYC--RNGLLEKAENLVNHEK 216 (349)
Q Consensus 172 ~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 216 (349)
.+.+.++.+..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776643211 233455666666554 4677777777666554
No 355
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=80.17 E-value=11 Score=27.50 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=28.1
Q ss_pred hhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 018924 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62 (349)
Q Consensus 4 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 62 (349)
+++.|++++..= ..++..+.+.++.-.|.++++++.+.+...+..|.-..+..+...|
T Consensus 12 lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 12 LKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455444332 2344555555555555666665555554444444444444444444
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.98 E-value=8.3 Score=24.44 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=22.7
Q ss_pred hcCChHHHHHHHHHhhcCCCCCcc-HHHHHHHHHHHhhcCcHHHHHHH
Q 018924 60 DASDHEGIDKILTMMEADPNVALD-WVIYATVGNGYGKVGLLDKALAM 106 (349)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 106 (349)
..++.++|+..|....++..-.++ ..++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566665555422221122 22334555666666666655543
No 357
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.85 E-value=48 Score=30.18 Aligned_cols=31 Identities=23% Similarity=-0.100 Sum_probs=26.2
Q ss_pred HhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 275 KDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 275 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
.-.++.+.|..++.++....+++...|..++
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 3467888999999999988888888888888
No 358
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.48 E-value=36 Score=31.09 Aligned_cols=103 Identities=12% Similarity=0.018 Sum_probs=74.5
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
....+.|+++.|.++..+.. +. .-|..|.++....+++..|.+.|... .-|..|+-.+...|+.+
T Consensus 645 elal~lgrl~iA~~la~e~~------s~-~Kw~~Lg~~al~~~~l~lA~EC~~~a--------~d~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN------SE-VKWRQLGDAALSAGELPLASECFLRA--------RDLGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc------ch-HHHHHHHHHHhhcccchhHHHHHHhh--------cchhhhhhhhhhcCChh
Confidence 34456777777777766532 22 67999999999999999999999821 23667777888888887
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (349)
....+-....+.| ..| .-..+|...|+++++.+++..-
T Consensus 710 ~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 710 GLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 7777767666665 333 3344677889999998887644
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.30 E-value=48 Score=30.32 Aligned_cols=147 Identities=11% Similarity=-0.066 Sum_probs=85.4
Q ss_pred CChhhHHHHHHHHhcc--CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHH
Q 018924 152 VLNNGYRNVISSLLKL--DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229 (349)
Q Consensus 152 ~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 229 (349)
|+..+.-.++.-.... ...+-+-.++..|.. -..|-..+.|.........|+...|...+.......+.-..+..-.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 5555554444333221 122334444444432 2344444444333333446788888887776654332222233444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
|.....+.|...+|-.++.+.+.. . ...+-++..+.+++.-..+++.|.+.|+.+.+..+.+...-+.+.
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~-----~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAI-----N-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhh-----c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 555566667777888888887754 2 334567777788888888899999999888887776666555554
No 360
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.94 E-value=22 Score=25.86 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=8.3
Q ss_pred HhcCcHHHHHHHHHHHHH
Q 018924 200 CRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 200 ~~~~~~~~a~~~~~~~~~ 217 (349)
...|++++|.++|+.+.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344444444444444444
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.91 E-value=17 Score=25.50 Aligned_cols=45 Identities=11% Similarity=-0.059 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
..+-++.+..-++.|++.....-+.+|-+-+++..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555556667777777777777777777777777777664
No 362
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.91 E-value=11 Score=28.92 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=17.3
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
.|+..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555555555555555555555544
No 363
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.93 E-value=34 Score=26.31 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=52.9
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCcc--cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHH
Q 018924 196 IDVYCRNGLLEKAENLVNHEKLKGRE--IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273 (349)
Q Consensus 196 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 273 (349)
...+..++++++|..-++........ .....--.|.......|.+++|+..++..... +. .......--+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-----~w--~~~~~elrGDi 168 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-----SW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-----cH--HHHHHHHhhhH
Confidence 34566677777777777765542110 01112223445566777777777777766533 22 22223333456
Q ss_pred HHhcCChhhHHHHHHHHhhCC
Q 018924 274 FKDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 274 ~~~~g~~~~a~~~~~~~~~~~ 294 (349)
+...|+-++|+.-|......+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 677778888887777777664
No 364
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=75.50 E-value=39 Score=26.89 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=77.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 158 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
...+..|.+.-++..|-...+++.+ |= .+ ..-+--|.+..+.+--.++.+-....++.-+......++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiE----PI-QS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIE----PI-QS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhh----hH-Hh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 3344555555555544444444422 21 11 122223444444444444444444555555555555444 4668
Q ss_pred CCHHHHHHHHHHHHHHhc--cccc-----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 238 SQIHKAVEAMKKVLAAYQ--TLVK-----WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~--~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
|+..+|+.-++.-...+. ...+ -.|.+.....++..|. .+++++|.++++++-+.|..+....+.+.
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888888888887765311 0000 1366666666776654 46888888888888888886666666655
No 365
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.45 E-value=56 Score=28.64 Aligned_cols=202 Identities=13% Similarity=-0.032 Sum_probs=97.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHH--HHHHHHHHHh
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYT--YCTRLSAYADASDHEGIDKILTMMEADPNVALDWV--IYATVGNGYG 95 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~ 95 (349)
+...++.|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+-+.-++ +.|..|+.. ...+.+...+
T Consensus 6 L~~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 6 LCDAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLM-----KHGAIPDVKYPDIESELHDAV 76 (413)
T ss_pred HHHHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-----hCCCCccccCCCcccHHHHHH
Confidence 3344566776554 44445677665432 234455566778876443333 333333322 1123566677
Q ss_pred hcCcHHHHHHHHHHHHHhhcCCcch--hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhh--HHHHHHHHhccCCHH
Q 018924 96 KVGLLDKALAMLKKSEEQIKGAKVN--SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG--YRNVISSLLKLDDLE 171 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 171 (349)
..|+.+.+..+++. |...... ..-.+.+...+..|+.+-+..+++ .|..|+... -.+.+...+..|+.+
T Consensus 77 ~~g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~---~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 77 EEGDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKKLDIMKLLIA---RGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred HCCCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCCHHHHHHHHh---CCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 88988876666653 2221110 011233444556677655544444 444443221 122344445677766
Q ss_pred HHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh---HHHHHHHHhcCCCHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDT---RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS---WYYLATGYRQNSQIHKAVE 245 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~ 245 (349)
-+..+ .+.|..++. .-.+.| ...+..|+.+- .+.+.+.|..++... ..+.+...+..|+.+-+.-
T Consensus 150 ~v~~L----l~~g~~~~~~d~~g~TpL-~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~ 220 (413)
T PHA02875 150 GIELL----IDHKACLDIEDCCGCTPL-IIAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220 (413)
T ss_pred HHHHH----HhcCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHH
Confidence 54444 444443332 223333 33455677654 444556666555432 1234443455666554433
Q ss_pred H
Q 018924 246 A 246 (349)
Q Consensus 246 ~ 246 (349)
+
T Consensus 221 L 221 (413)
T PHA02875 221 F 221 (413)
T ss_pred H
Confidence 3
No 366
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.21 E-value=94 Score=31.14 Aligned_cols=151 Identities=18% Similarity=0.080 Sum_probs=91.4
Q ss_pred HHHhhcCcHHHHHHHHHHHHHh-----------------------hcCCcch----hhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQ-----------------------IKGAKVN----SAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
.+|...|...+|++.|.+.... |-.+..+ +-|...++.+-+.+-.+.+.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3466778888888888776432 2222221 236667777778888888887777
Q ss_pred HHHhhccCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCcHH----------
Q 018924 145 LYKKAVKVLN----NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR----IPNFLIDVYCRNGLLE---------- 206 (349)
Q Consensus 145 ~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~---------- 206 (349)
+.....+++. .+++.+.+.....|.+-+|...+-. .||.. ...-|+-.++.+|.++
T Consensus 1008 ~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl 1081 (1480)
T KOG4521|consen 1008 KAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGL 1081 (1480)
T ss_pred HHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccch
Confidence 6666666543 3577778888888888888766542 34432 3455677777777654
Q ss_pred --HHHH-HHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924 207 --KAEN-LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248 (349)
Q Consensus 207 --~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 248 (349)
+... +++..-...+......|+.|-.-+...+++.+|-.+.-
T Consensus 1082 ~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1082 EQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 3333 33322222222233456666666677888887765543
No 367
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.19 E-value=43 Score=27.22 Aligned_cols=210 Identities=10% Similarity=0.022 Sum_probs=119.1
Q ss_pred CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHhhcCCCCCccH--HHHHHHHHHHhhcCcHHHHHHHHHHHHH---hhcC
Q 018924 43 GITYDRYTYCTRLSAY-ADASDHEGIDKILTMMEADPNVALDW--VIYATVGNGYGKVGLLDKALAMLKKSEE---QIKG 116 (349)
Q Consensus 43 ~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~ 116 (349)
+-.||+..=|..-++- .+...+++|+.-|++...-.|-+.++ .+.-.++..+.+.|++++....|.++.- +.+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456665444332221 13456788888888876222332222 2335678888888888888888888753 2121
Q ss_pred Cc-chhhHHHHHHHHhhcCCHHHHHHHHH-HH--Hhhcc---CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC---
Q 018924 117 AK-VNSAYNVILTLYGKYGKKDDVLRIWE-LY--KKAVK---VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC--- 186 (349)
Q Consensus 117 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~--~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--- 186 (349)
.+ +..+.|+++.....+.+.+--..+|+ .. ....+ ..-.|-.-+...|...+.+.+..+++.++...--.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 11 11356777776666666666666666 11 11111 11123345667777778888888887777642111
Q ss_pred --------CCcchHHHHHHHHHhcCcHHHHHHHHHHHHH-cCcccchhhHHHHHHHH-----hcCCCHHHHHHHHHHHHH
Q 018924 187 --------YDTRIPNFLIDVYCRNGLLEKAENLVNHEKL-KGREIHVKSWYYLATGY-----RQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 187 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~~~~~~~ 252 (349)
.-..+|..-|..|....+-..-..+|++... +...|.+.... +|.-| .+.|++++|-.-|-++.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1123455666667666666666667765543 22334444333 33333 456777777777777776
Q ss_pred H
Q 018924 253 A 253 (349)
Q Consensus 253 ~ 253 (349)
.
T Consensus 260 N 260 (440)
T KOG1464|consen 260 N 260 (440)
T ss_pred c
Confidence 5
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.13 E-value=49 Score=27.32 Aligned_cols=74 Identities=8% Similarity=-0.023 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVES 266 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 266 (349)
++.....|..+|.+.+|.++.++....++ .+...|-.++..+...|+--.+..-+.++.+......|+..+...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 44556677888888888888888877543 366777788888888888666666666665543333466655433
No 369
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.10 E-value=91 Score=30.42 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=18.0
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 018924 164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 200 (349)
|......+-+..+++.+....-.++....+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 3444555555555555554333334444455555444
No 370
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.05 E-value=86 Score=29.67 Aligned_cols=184 Identities=11% Similarity=0.025 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 018924 31 KLDSLMHEMEENGITYDRYTY-CTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK 109 (349)
Q Consensus 31 ~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 109 (349)
+.+...+.+.+..-.|+..+- -.+-+.|...|++++|+.+--......++.++...+.+++.-|... -.+.+.+.++.
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~ 119 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKN 119 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcC
Confidence 344444555444333333332 3344578889999999887554432455666666666555444332 01122222221
Q ss_pred HH-HhhcCCcchhhHHHHHHHHhhcCCHHHHHHHH----H--HHHh-hccC--ChhhHHHHHHHHhccCC-HHHHHHHHH
Q 018924 110 SE-EQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW----E--LYKK-AVKV--LNNGYRNVISSLLKLDD-LESAEKIFE 178 (349)
Q Consensus 110 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~--~~~~-~~~~--~~~~~~~li~~~~~~~~-~~~a~~~~~ 178 (349)
-. ..++.+......+.++..|...+++..|+.+. + +... .++. +....+.++..+....+ -+--.++++
T Consensus 120 ~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr 199 (929)
T KOG2062|consen 120 PEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLR 199 (929)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11 11122222223444444444444444443321 1 1111 1111 12233444444443332 333344444
Q ss_pred HHHh---cCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 179 EWES---QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 179 ~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
.+.+ ....|| |..+..+|.-..+.+.|..+++++.+.
T Consensus 200 ~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 200 LLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 4443 223444 344677777888888888888888874
No 371
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=72.83 E-value=18 Score=27.16 Aligned_cols=61 Identities=5% Similarity=-0.025 Sum_probs=33.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHH
Q 018924 39 MEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD 101 (349)
Q Consensus 39 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 101 (349)
+...|++++..=. .++..+...++.-.|.++++.+. +.+..++..|...-+..+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3455665444322 34444444455556777777776 5555556555555666666666543
No 372
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=72.51 E-value=4 Score=28.86 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=22.6
Q ss_pred hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924 96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (349)
..|.-.+|..+|++|.+.|..|+. |+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd---W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD---WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc---HHHHHHHh
Confidence 345566788888888888766655 77777653
No 373
>PRK09687 putative lyase; Provisional
Probab=71.80 E-value=56 Score=26.98 Aligned_cols=221 Identities=10% Similarity=0.006 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH----HHHHHHHHHHHHhhcCCcchh
Q 018924 46 YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL----DKALAMLKKSEEQIKGAKVNS 121 (349)
Q Consensus 46 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~ 121 (349)
+|.......+.++...|..+ +...+..+... ++...-...+.+++..|+. +++...+..+... .++. .
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~-~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA-C 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH-H
Confidence 46666666666776666533 33333334312 3344444566666666653 4566666665332 3343 4
Q ss_pred hHHHHHHHHhhcCCH-----HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 018924 122 AYNVILTLYGKYGKK-----DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLI 196 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 196 (349)
+....+.++...+.. ..+...+. ..-..++..+-...+.++.+.++. .+...+-.+.+ .+|..+-...+
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~--~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQ--ITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHH--HHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHH
Confidence 444555555444321 12222222 112223555556666777777663 45555555554 23444555555
Q ss_pred HHHHhcC-cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHH
Q 018924 197 DVYCRNG-LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFK 275 (349)
Q Consensus 197 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 275 (349)
.++.+.+ ..+.+...+..+... +|...-...+.++.+.|+ ..++..+-+..+. + + .....+.++.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~-----~---~--~~~~a~~ALg 246 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKK-----G---T--VGDLIIEAAG 246 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcC-----C---c--hHHHHHHHHH
Confidence 5555542 234555555555532 455556667777777776 4566666555542 2 2 2345667777
Q ss_pred hcCChhhHHHHHHHHhhCCC
Q 018924 276 DEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 276 ~~g~~~~a~~~~~~~~~~~~ 295 (349)
..|+. +|...+..+.+..+
T Consensus 247 ~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred hcCCH-hHHHHHHHHHhhCC
Confidence 77877 46666666665433
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.79 E-value=25 Score=23.18 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=28.7
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccccCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKP----SVESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
.+.|++.+|.+.+.+..+..... +..+ -......+.......|+.++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~-~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQS-NNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45566666655555554431100 1111 0122222334456677777777777766654
No 375
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.34 E-value=5.2 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=21.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 018924 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57 (349)
Q Consensus 25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 57 (349)
..|.-.+|-.+|..|+.+|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 346666778888888888877764 5566554
No 376
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.25 E-value=46 Score=25.80 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=53.0
Q ss_pred HHhcCcHHHHHHHHHHHHHcCcc----cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHH
Q 018924 199 YCRNGLLEKAENLVNHEKLKGRE----IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDY 273 (349)
Q Consensus 199 ~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~ 273 (349)
+...|++++|..-|...+..=+. .-...|..-..++.+.+.++.|+.-..+.++ +.|+ ......-..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-------l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-------LNPTYEKALERRAEA 177 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-------cCchhHHHHHHHHHH
Confidence 34566666666666666553111 0123344445566677777777777776663 3442 2223333446
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCCc
Q 018924 274 FKDEGDIGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 274 ~~~~g~~~~a~~~~~~~~~~~~~~~ 298 (349)
|.+...+++|..=++.+.+..|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 6677777777777777777655433
No 377
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.91 E-value=31 Score=23.61 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444555555554444443
No 378
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=70.70 E-value=46 Score=25.54 Aligned_cols=177 Identities=13% Similarity=0.164 Sum_probs=91.6
Q ss_pred hCCCccHHHHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHhhcCC
Q 018924 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHE----MEENGITYDRY----TYCTRLSAYADASDHEGIDKILTMMEADP 78 (349)
Q Consensus 7 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 78 (349)
.|..++...+|-++..+.+..-...-++.+-. ....++.++-. ....-+..|-+.||+.+.-.+|-... .
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~-~- 79 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK-M- 79 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH-h-
Confidence 47778888888888777665433333333333 33344444332 22222334555666665555554433 1
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHH-----HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC
Q 018924 79 NVALDWVIYATVGNGYGKVGLLDK-----ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL 153 (349)
Q Consensus 79 ~~~~~~~~~~~li~~~~~~g~~~~-----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (349)
|. -+.+++.. |+.+.++.++ .|. ..|.....+-++.-..+++.+.+- -
T Consensus 80 gc--------------e~~~dlq~~~~~va~~Ltkd~Kd---k~~--vPFceFAetV~k~~q~~e~dK~~L-G------- 132 (233)
T PF14669_consen 80 GC--------------EKFADLQRFCACVAEALTKDSKD---KPG--VPFCEFAETVCKDPQNDEVDKTLL-G------- 132 (233)
T ss_pred hc--------------CCHHHHHHHHHHHHHHHHhcccc---cCC--CCHHHHHHHHhcCCccchhhhhhh-h-------
Confidence 11 11111111 2333333322 222 467777777776666666555543 1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCC--------------CCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924 154 NNGYRNVISSLLKLDDLESAEKIFEEWESQAL--------------CYDTRIPNFLIDVYCRNGLLEKAENLVN 213 (349)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 213 (349)
..--+++-.|.+.-++.++.++++.|.+..+ .+--...|.-...+.+.|.+|.|..+++
T Consensus 133 -RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 133 -RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 1122456667777888888888888776432 1222334555555566666666665554
No 379
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=70.58 E-value=27 Score=28.91 Aligned_cols=43 Identities=7% Similarity=0.008 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
++++.+.+.++.|.-..+..+...+.+.=.+.++..+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555555555555555555555555554
No 380
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=70.56 E-value=61 Score=26.95 Aligned_cols=69 Identities=6% Similarity=0.110 Sum_probs=38.5
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh----------cCCHHH
Q 018924 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK----------YGKKDD 138 (349)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 138 (349)
++|+.+. +.++.|.-.++.-+.-.+.+.=.+.+++.+++.+.. +. .-|..|+..||. .|++..
T Consensus 264 EL~~~L~-~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~-~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 264 ELWRHLE-EKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DP-QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHH-hcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----Ch-hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4566666 556666666665555556666666666666666543 11 224444444432 466666
Q ss_pred HHHHHH
Q 018924 139 VLRIWE 144 (349)
Q Consensus 139 a~~~~~ 144 (349)
..++++
T Consensus 337 nmkLLQ 342 (370)
T KOG4567|consen 337 NMKLLQ 342 (370)
T ss_pred HHHHHh
Confidence 666665
No 381
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=70.44 E-value=13 Score=30.67 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=27.3
Q ss_pred CCccHHHH-HHHHHHHhhcCcHHHHHHHHHHHHHhhcC
Q 018924 80 VALDWVIY-ATVGNGYGKVGLLDKALAMLKKSEEQIKG 116 (349)
Q Consensus 80 ~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 116 (349)
+.|+..+| +..|..-.+.|++++|++++++.++.|..
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 33555554 67888888888888888888888877654
No 382
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.22 E-value=30 Score=25.16 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=22.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCCh
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI 280 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 280 (349)
++..+...++.-.|.++++.+.+. +...+..|....++.+...|-+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~-----~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREE-----GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh-----CCCCCHhHHHHHHHHHHHCCCE
Confidence 444444444445555555555554 4444444444445555544443
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.02 E-value=29 Score=22.58 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=30.8
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139 (349)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (349)
++++.+. +.|+ .+..-...+-.+--..|+.+.|.+++..+. .|+ ..|...++++-..|...-|
T Consensus 23 ~v~d~ll-~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~-----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCL-EQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE-----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHH-hcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC-----cHHHHHHHHHHHcCchhhh
Confidence 4455555 4444 333333322222234466666666666654 221 3566666666666554443
No 384
>PRK09462 fur ferric uptake regulator; Provisional
Probab=68.78 E-value=31 Score=25.17 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=28.8
Q ss_pred hhhhCCCccHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 018924 4 MRDLGLARTTVVYNSMLKLYYKT-GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63 (349)
Q Consensus 4 m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 63 (349)
|++.|++++..=- .++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444555443332 233444433 3455666666666665555555554444555555443
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.54 E-value=9.4 Score=18.57 Aligned_cols=28 Identities=29% Similarity=0.143 Sum_probs=15.3
Q ss_pred CChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 278 GDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
|+.+.+..+|+.+....+.+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3456666666666655444444454443
No 386
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.32 E-value=25 Score=23.58 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=53.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 018924 27 GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM 106 (349)
Q Consensus 27 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 106 (349)
...++|..+-+.+...+-. ....--+-+..+...|++++|..+.+.+ ..||...|.+|. -.+.|..+++..-
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALc--e~rlGl~s~l~~r 90 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALC--EWRLGLGSALESR 90 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHH--HHhhccHHHHHHH
Confidence 3467787777777665322 2223333345667889999998776544 348888876554 4678888888888
Q ss_pred HHHHHHhh
Q 018924 107 LKKSEEQI 114 (349)
Q Consensus 107 ~~~~~~~~ 114 (349)
+.++..+|
T Consensus 91 l~rla~sg 98 (115)
T TIGR02508 91 LNRLAASG 98 (115)
T ss_pred HHHHHhCC
Confidence 88887765
No 387
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=68.25 E-value=71 Score=26.78 Aligned_cols=146 Identities=10% Similarity=0.047 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhhcCCCC---CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH
Q 018924 64 HEGIDKILTMMEADPNV---ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL 140 (349)
Q Consensus 64 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (349)
.+.|.+.|+........ ..+......+.....+.|..+.-..+++.... ..+. .-...++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~-~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSP-EEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTH-HHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCH-HHHHHHHHhhhccCCHHHHH
Confidence 45567777776622111 33445555677777777776665555555543 2233 56778888888888888888
Q ss_pred HHHHHHHhhc-cCChhhHHHHHHHHhccCC--HHHHHHHHHH----HHhcCCCCCcchHHHHHHHH----HhcCcHHHHH
Q 018924 141 RIWELYKKAV-KVLNNGYRNVISSLLKLDD--LESAEKIFEE----WESQALCYDTRIPNFLIDVY----CRNGLLEKAE 209 (349)
Q Consensus 141 ~~~~~~~~~~-~~~~~~~~~li~~~~~~~~--~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~ 209 (349)
++++....+- .++.. ...++.++...+. .+.+.+.+.. +.+. ...+......++..+ +...+.++..
T Consensus 222 ~~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 8888444432 22222 3344444442332 2555555433 3332 233322444455443 3334455555
Q ss_pred HHHHHH
Q 018924 210 NLVNHE 215 (349)
Q Consensus 210 ~~~~~~ 215 (349)
++|+.-
T Consensus 300 ~f~~~~ 305 (324)
T PF11838_consen 300 EFFEDK 305 (324)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 555433
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.98 E-value=31 Score=22.47 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 244 (349)
+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. .|. ..|..++.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhh
Confidence 34555556555532 22222222222224577777777777777 542 25667777777776655443
No 389
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.41 E-value=15 Score=22.37 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=35.7
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 61 (349)
.|+...++.++..+++..-.++++..+.+..++|. .+..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 36667778888888888888888888888888774 3566666666666553
No 390
>PRK09687 putative lyase; Provisional
Probab=66.80 E-value=72 Score=26.33 Aligned_cols=216 Identities=12% Similarity=-0.057 Sum_probs=102.4
Q ss_pred ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH----HHHHHHHH-HHHhhccCChhh
Q 018924 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK----DDVLRIWE-LYKKAVKVLNNG 156 (349)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~-~~~~~~~~~~~~ 156 (349)
++..+....+..+...|.. ++...+..+.. .++. ..-...+.++...|+. .++...+. +.. ..++...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~-~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNP-IERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHHH
Confidence 3444444555555555542 23333333322 2333 4555556666666653 33444444 211 2344444
Q ss_pred HHHHHHHHhccCCH-----HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924 157 YRNVISSLLKLDDL-----ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231 (349)
Q Consensus 157 ~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 231 (349)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+. +|...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHH
Confidence 44555555444321 122233322222 23444555566666666653 444444444442 3333444444
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhh
Q 018924 232 TGYRQNS-QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQ 309 (349)
Q Consensus 232 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~ 309 (349)
.++.+.+ .-+.+...+..++. .++...-...+.++.+.|+.. +...+-...+.+. .....+ ++.+
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~--------D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~~----~~~~a~~ALg~ 247 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ--------DKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKGT----VGDLIIEAAGE 247 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc--------CCChHHHHHHHHHHHccCChh-HHHHHHHHHcCCc----hHHHHHHHHHh
Confidence 4454432 23455666655553 345555566666677776643 3333333333211 223455 7777
Q ss_pred cC-cchHHHHHHHHhC
Q 018924 310 NG-KSNLETLRELYGN 324 (349)
Q Consensus 310 ~g-~~a~~~~~~m~~~ 324 (349)
.| .+|+..+.++.+.
T Consensus 248 ig~~~a~p~L~~l~~~ 263 (280)
T PRK09687 248 LGDKTLLPVLDTLLYK 263 (280)
T ss_pred cCCHhHHHHHHHHHhh
Confidence 77 6777777777653
No 391
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.32 E-value=56 Score=24.88 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCcccch--hhH-----HHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 205 LEKAENLVNHEKLKGREIHV--KSW-----YYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~--~~~-----~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
++.|..+|+.+.+.-..|.. ..- ...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 46677777766654332211 111 2234568899999999999999874
No 392
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.20 E-value=53 Score=27.58 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=27.7
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
.|.-+-.+.|+..+|.+.|+.+.+.-+-.+.-..-..|+.++....-+.++..++-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445677777777776665432211111223345555555555544444443
No 393
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.42 E-value=18 Score=29.74 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=23.6
Q ss_pred CCHH-HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHH
Q 018924 46 YDRY-TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVI 86 (349)
Q Consensus 46 p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 86 (349)
||.. -|+..|....+.||+++|++++++.+ +.|+.--..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe-~LG~~~Ar~t 294 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAE-RLGSTSARST 294 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCchHHHH
Confidence 3443 34566666666677777777776666 5566443333
No 394
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.18 E-value=51 Score=23.99 Aligned_cols=82 Identities=5% Similarity=-0.001 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCc-----ccchhhHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcccccCCCCHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGR-----EIHVKSWYYLATGYRQNSQ-IHKAVEAMKKVLAAYQTLVKWKPSVE 265 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~p~~~ 265 (349)
.|.++.-....+.......+++.+..... ..+..+|++++.+..+..- .--+..+|+-+.+. +.+++..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~-----~~~~t~~ 116 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN-----DIEFTPS 116 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHc-----CCCCCHH
Confidence 45566666666666666666665532110 1355678888888866655 44567778877765 7788888
Q ss_pred HHHHHHHHHHhcC
Q 018924 266 SLAACLDYFKDEG 278 (349)
Q Consensus 266 ~~~~ll~~~~~~g 278 (349)
-|..++.++.+..
T Consensus 117 dy~~li~~~l~g~ 129 (145)
T PF13762_consen 117 DYSCLIKAALRGY 129 (145)
T ss_pred HHHHHHHHHHcCC
Confidence 8888888876653
No 395
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.08 E-value=1.3e+02 Score=28.68 Aligned_cols=101 Identities=8% Similarity=-0.027 Sum_probs=57.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITY---DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 96 (349)
|+.+.+.+.+++|+++-+.-.. ..| -...+...+..+.-.|++++|-...-.|. . -+..-|.--+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-G----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-c----chHHHHHHHHHHhcc
Confidence 3455667777888777655433 233 23456667777777788888777777776 2 334455555555666
Q ss_pred cCcHHHHHHHHHHHHHhhcC-CcchhhHHHHHHHHhh
Q 018924 97 VGLLDKALAMLKKSEEQIKG-AKVNSAYNVILTLYGK 132 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 132 (349)
.++......++-. ++. .+. ..|..++..+..
T Consensus 436 ~~~l~~Ia~~lPt----~~~rL~p-~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAPYLPT----GPPRLKP-LVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhccCCC----CCcccCc-hHHHHHHHHHHH
Confidence 5554433322211 122 223 567777766665
No 396
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=64.52 E-value=34 Score=31.59 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 018924 104 LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181 (349)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 181 (349)
....+++..+-+..+. ..-..++..|.+.|-.+.|.++++ +...-.. ..-|...+..+.+.|+...+..+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~-~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTN-DDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SH-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCch-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444443333333 556677777778887777777777 3222221 2345556666666666665555555444
No 397
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.13 E-value=2.4e+02 Score=31.05 Aligned_cols=149 Identities=9% Similarity=0.037 Sum_probs=93.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEM----EENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG 93 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 93 (349)
.|..+-.+.+.+.+|+..++.- ++.. -...-|-.+...|+..+++|...-+......+ |+.. .-|..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~sl~---~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----PSLY---QQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----ccHH---HHHHH
Confidence 4555667888999999999883 2221 12234444555899999999887777642202 3322 35666
Q ss_pred HhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhH-HHHHHHHhccCCHHH
Q 018924 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY-RNVISSLLKLDDLES 172 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~ 172 (349)
....|++..|...|+++.+. .|+...+++-++......|.++.++...+-......+....+ +.=+.+-.+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhh
Confidence 78889999999999999875 444335778777777777887777766652222222222222 233344456666666
Q ss_pred HHHHH
Q 018924 173 AEKIF 177 (349)
Q Consensus 173 a~~~~ 177 (349)
.....
T Consensus 1537 ~e~~l 1541 (2382)
T KOG0890|consen 1537 LESYL 1541 (2382)
T ss_pred hhhhh
Confidence 65553
No 398
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.58 E-value=53 Score=27.60 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=38.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 54 RLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 54 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
|.-+.-+.|+..+|.+.++.+.++..+..-..+...|+.++....-+.++..++-+.-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444568999999999999873433322223334678888877777666666655543
No 399
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=62.50 E-value=96 Score=26.26 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=36.0
Q ss_pred HHhcCChHHHHHHHHHhhcCC--CCCccHHHH--HHHHHHHhhcCcHHHHHHHHHHHHH-----hhcCCcchhhHHHHHH
Q 018924 58 YADASDHEGIDKILTMMEADP--NVALDWVIY--ATVGNGYGKVGLLDKALAMLKKSEE-----QIKGAKVNSAYNVILT 128 (349)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~ 128 (349)
.-+.++.++|+++++++..+. .-.|+...| .....++...|+..++.+++++.++ .++.++....|..+-+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 334455666666666554211 112444444 2344455556666666666666555 3444433334444444
Q ss_pred HHh
Q 018924 129 LYG 131 (349)
Q Consensus 129 ~~~ 131 (349)
-|.
T Consensus 165 qYy 167 (380)
T KOG2908|consen 165 QYY 167 (380)
T ss_pred HHH
Confidence 443
No 400
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.24 E-value=1.5e+02 Score=28.28 Aligned_cols=119 Identities=15% Similarity=0.077 Sum_probs=82.1
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCcccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHH
Q 018924 198 VYCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFK 275 (349)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 275 (349)
++..-|+-++|..+.++|.... .|- ..-.-++..+|+-.|+-....+++.-... ...-|..-+..+.-++.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs------D~nDDVrRaAVialGFV 582 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS------DVNDDVRRAAVIALGFV 582 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc------ccchHHHHHHHHHheee
Confidence 4555677888888888887542 121 11234566788889998888888877664 44556666666666777
Q ss_pred hcCChhhHHHHHHHHhhCCCCCchhHHHHh---hhhhcC-cchHHHHHHHHh
Q 018924 276 DEGDIGGAENFIELLNDKGFIPTDLQDKLL---DNVQNG-KSNLETLRELYG 323 (349)
Q Consensus 276 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~---~~~~~g-~~a~~~~~~m~~ 323 (349)
-..+.+....+...+.+..-|....-.++. +++-.| .+|+.+++-|..
T Consensus 583 l~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 583 LFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred EecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 888899988888888877545444333333 555666 899999998865
No 401
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.08 E-value=1.4e+02 Score=28.16 Aligned_cols=112 Identities=15% Similarity=0.043 Sum_probs=56.9
Q ss_pred CcHHHHHHHHHHHHHcC-cccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC
Q 018924 203 GLLEKAENLVNHEKLKG-REIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 279 (349)
.+.+.|...+....... ..+. ...+..+.......+..++|...+...... ..+.....--+....+.++
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~-------~~~~~~~e~r~r~Al~~~d 327 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR-------SQSTSLLERRVRMALGTGD 327 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc-------cCCcHHHHHHHHHHHHccC
Confidence 44567777777654322 1111 122334443333433245566665554321 2233344444455557788
Q ss_pred hhhHHHHHHHHhhCCCCCchhHHHHh--hhhhcC--cchHHHHHHHH
Q 018924 280 IGGAENFIELLNDKGFIPTDLQDKLL--DNVQNG--KSNLETLRELY 322 (349)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~~~g--~~a~~~~~~m~ 322 (349)
++.+...+..|..... +..-|..-. ++...| ++|...|+...
T Consensus 328 w~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 328 RRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8887777777755322 222233333 555566 67777777763
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.80 E-value=1.7e+02 Score=28.77 Aligned_cols=187 Identities=14% Similarity=0.051 Sum_probs=108.0
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc-CC---hhhHHHHHHHHhccCCH--HHHHHHHHHHHhcCCCCCcchHH-
Q 018924 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VL---NNGYRNVISSLLKLDDL--ESAEKIFEEWESQALCYDTRIPN- 193 (349)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~- 193 (349)
.-|..|+..|...|+.++|+++|.....+.. .| ...+-.++....+.+.. +..+++-....+........++.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 4688999999999999999999994333321 11 12344566666666655 66666655555433221111221
Q ss_pred -----------HHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC--------CCHHHHHHH-----HHH
Q 018924 194 -----------FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN--------SQIHKAVEA-----MKK 249 (349)
Q Consensus 194 -----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~-----~~~ 249 (349)
.-+-.|......+-+...++.+....-.++....+.++..|+.. ++-+++.+. +..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 23445778888999999999998766666777778888777542 122233333 222
Q ss_pred HHHHhcccccCCCCH--------HHHHHHHHHHHhcCChhhHHHHHHHHhh--------------CCCCCchhHHHHh-h
Q 018924 250 VLAAYQTLVKWKPSV--------ESLAACLDYFKDEGDIGGAENFIELLND--------------KGFIPTDLQDKLL-D 306 (349)
Q Consensus 250 ~~~~~~~~~~~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------------~~~~~~~~~~~l~-~ 306 (349)
+++. ...+.|.. ..|.-..--+.+.|+.++|..++-.... .+.++...|..++ .
T Consensus 665 ~l~~---s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~ 741 (877)
T KOG2063|consen 665 FLES---SDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRI 741 (877)
T ss_pred Hhhh---hcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHH
Confidence 2221 11233322 1122211223478888888877654433 1224666788888 6
Q ss_pred hhhc
Q 018924 307 NVQN 310 (349)
Q Consensus 307 ~~~~ 310 (349)
|...
T Consensus 742 ~l~~ 745 (877)
T KOG2063|consen 742 YLNP 745 (877)
T ss_pred Hhcc
Confidence 6665
No 403
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=61.41 E-value=31 Score=23.68 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=34.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHE 65 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 65 (349)
.++..+...+..-.|.++++.+.+.+..++..|....++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355666666777788888888888777777777666777777776544
No 404
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.91 E-value=91 Score=25.47 Aligned_cols=208 Identities=10% Similarity=0.033 Sum_probs=132.8
Q ss_pred hhCCCccHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHhhc--CCC
Q 018924 6 DLGLARTTVVYNSMLKLY-YKTGNFEKLDSLMHEMEENGITYDRY---TYCTRLSAYADASDHEGIDKILTMMEA--DPN 79 (349)
Q Consensus 6 ~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~ 79 (349)
..|-.||+..=|.--.+- .+..++++|+.-|++..+.....-.. ....++....+.|++++....|.++.. +..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 345667777655443322 24568999999999998753222222 456678899999999999999988852 111
Q ss_pred --CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc-CCcchhhH----HHHHHHHhhcCCHHHHHHHHHHHHhhccC
Q 018924 80 --VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKVNSAY----NVILTLYGKYGKKDDVLRIWELYKKAVKV 152 (349)
Q Consensus 80 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (349)
-..+..+.|++++.-+...+.+--.+.|+.-.+.-- ..+. ..| ..|...|...+++....++++.....+..
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNe-RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNE-RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcc-eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 113455667888887877777777666665443211 1222 333 56888899999999999998844444432
Q ss_pred C-----h-------hhHHHHHHHHhccCCHHHHHHHHHHHHhc-CCCCCcchHHHHHHHH-----HhcCcHHHHHHHHHH
Q 018924 153 L-----N-------NGYRNVISSLLKLDDLESAEKIFEEWESQ-ALCYDTRIPNFLIDVY-----CRNGLLEKAENLVNH 214 (349)
Q Consensus 153 ~-----~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~ 214 (349)
+ . ..|..=|..|....+-.....++++.... ..-|.+.... .|+-| .+.|++++|-.-|-+
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHH
Confidence 1 1 24777788888888888888888876542 1234443333 33333 356788887654443
Q ss_pred H
Q 018924 215 E 215 (349)
Q Consensus 215 ~ 215 (349)
.
T Consensus 257 A 257 (440)
T KOG1464|consen 257 A 257 (440)
T ss_pred H
Confidence 3
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.86 E-value=35 Score=30.08 Aligned_cols=50 Identities=8% Similarity=-0.188 Sum_probs=21.8
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 166 KLDDLESAEKIFEEWESQALCYDTRI-PNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
..++++.|..++.++.+. .||... |..=..++.+.+++..|..=+....+
T Consensus 16 ~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred ccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 344455555555555442 332222 22222444455555555444444444
No 406
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.98 E-value=1.5e+02 Score=27.77 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc--HHHHHHHHHHHh-hcCcHHHHHHHHHHHHHhhcCCcch---
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD--WVIYATVGNGYG-KVGLLDKALAMLKKSEEQIKGAKVN--- 120 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~--- 120 (349)
+...|..+|.. |++.++.+.++..++|. ..++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 45567777654 45666666534455454 344456666666 6789999999999775533222220
Q ss_pred -hhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc-----CChhhHHHH-HHHHhccCCHHHHHHHHHHHHhcC---CCCCcc
Q 018924 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAVK-----VLNNGYRNV-ISSLLKLDDLESAEKIFEEWESQA---LCYDTR 190 (349)
Q Consensus 121 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 190 (349)
.+-..++..+.+.+... |...++....... +....|..+ +..+...+++..|.+.++.+.... ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 12345566677766666 8888882222221 222334444 333334489999999998877532 233333
Q ss_pred hHHHHHHHHH--hcCcHHHHHHHHHHHHHcCc---------ccchhhHHHHHHHH--hcCCCHHHHHHHHHHHHHH
Q 018924 191 IPNFLIDVYC--RNGLLEKAENLVNHEKLKGR---------EIHVKSWYYLATGY--RQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 191 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~ 253 (349)
++-.++.+.. +.+..+++.+.++++..... .|-..+|..++..+ ...|+++.+...++.+.+.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~ 254 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQF 254 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444444433 34656777777776643211 23455666666554 4577877777776666544
No 407
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.78 E-value=1.2e+02 Score=26.47 Aligned_cols=180 Identities=14% Similarity=0.054 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc--hhhHHHHHHHHhhcCCHHHHHHHHHHHHh----------hcc
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV--NSAYNVILTLYGKYGKKDDVLRIWELYKK----------AVK 151 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~ 151 (349)
...+.-+..-|..+|+++.|++.|.+..+- ..... ...|-.+|..-...|+|.....+...... .++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 455677889999999999999999996542 11111 13456666666778888777766652111 222
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC------CCCCcchHHHHHHHHHhcCcHHHHHHH-----HHHHHHcCc
Q 018924 152 VLNNGYRNVISSLLKLDDLESAEKIFEEWESQA------LCYDTRIPNFLIDVYCRNGLLEKAENL-----VNHEKLKGR 220 (349)
Q Consensus 152 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~ 220 (349)
+....+..+.. ...+++..|.+.|-...... +.|...+....+.++..-++-+--..+ |+...+
T Consensus 229 ~kl~C~agLa~--L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle--- 303 (466)
T KOG0686|consen 229 AKLKCAAGLAN--LLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE--- 303 (466)
T ss_pred cchHHHHHHHH--HHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh---
Confidence 33333333333 33446666666654433211 122222222344444433333222222 222333
Q ss_pred ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHH
Q 018924 221 EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272 (349)
Q Consensus 221 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~ 272 (349)
..+..+..+..-| .+++...+++++++.....-+.-+.|...+.-.+|+
T Consensus 304 -l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 -LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred -cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 2344444454444 467888888888887642222334555555544443
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.50 E-value=48 Score=21.81 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=14.2
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHh
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQ 113 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~ 113 (349)
+.......|+.++|.+.+++..+.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444555566666666666666543
No 409
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.41 E-value=1.3e+02 Score=26.89 Aligned_cols=83 Identities=8% Similarity=-0.025 Sum_probs=41.7
Q ss_pred HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH
Q 018924 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD 137 (349)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (349)
....|+++.+.+.+.... . -+.....+...++....+.|+++.|..+-+-|....++.+. ......-..-..|-++
T Consensus 333 ~~~lg~ye~~~~~~s~~~-~-~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~e--i~~iaa~sa~~l~~~d 408 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVE-K-IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEE--VLTVAAGSADALQLFD 408 (831)
T ss_pred HHHhhhHHHHHHHhhchh-h-hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChh--heeeecccHHHHhHHH
Confidence 445566666666555443 1 12233344455666666666666666666666544333222 2222222233345556
Q ss_pred HHHHHHH
Q 018924 138 DVLRIWE 144 (349)
Q Consensus 138 ~a~~~~~ 144 (349)
++.-.|+
T Consensus 409 ~~~~~wk 415 (831)
T PRK15180 409 KSYHYWK 415 (831)
T ss_pred HHHHHHH
Confidence 6665555
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.50 E-value=31 Score=19.37 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=14.0
Q ss_pred hcCcHHHHHHHHHHHHHcCcccchhhHHHH
Q 018924 201 RNGLLEKAENLVNHEKLKGREIHVKSWYYL 230 (349)
Q Consensus 201 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 230 (349)
+.|-..++..++++|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444455555555554444444444433
No 411
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=58.36 E-value=30 Score=24.00 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 018924 17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64 (349)
Q Consensus 17 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 64 (349)
..++..+.+.+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 356667777777888888888888887777777666666666666643
No 412
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.33 E-value=1e+02 Score=28.85 Aligned_cols=78 Identities=8% Similarity=0.024 Sum_probs=44.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCcHHHH--HHHHH-HHHHcCcccchhhHHHHHHH
Q 018924 159 NVISSLLKLDDLESAEKIFEEWESQA--LCYDTRIPNFLIDVYCRNGLLEKA--ENLVN-HEKLKGREIHVKSWYYLATG 233 (349)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~-~~~~~~~~~~~~~~~~li~~ 233 (349)
+++.+|...|++..+.++++.....+ -+.-...+|..++...+.|.++-. ..-.. .+....+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67788888888888888887776532 112233466677777777765421 11111 22233444556666666655
Q ss_pred Hhc
Q 018924 234 YRQ 236 (349)
Q Consensus 234 ~~~ 236 (349)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 413
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=58.17 E-value=1.6e+02 Score=27.38 Aligned_cols=23 Identities=13% Similarity=0.311 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLM 36 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~ 36 (349)
..-|+ .+..+.-.|.++.|.+++
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHH
Confidence 66777 677788889999998888
No 414
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.94 E-value=51 Score=21.61 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCC
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK 135 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (349)
..--.+...+...|++++|++.+-++.+.....+...+-..|+..+.-.|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 333344555555555555555555554433222221344444444444443
No 415
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.78 E-value=98 Score=24.85 Aligned_cols=78 Identities=5% Similarity=-0.054 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHhhcCCCCCccHHHH-HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH
Q 018924 62 SDHEGIDKILTMMEADPNVALDWVIY-ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL 140 (349)
Q Consensus 62 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (349)
..++.|+..|.+.. -+.|+..+| +.-+-++.+..+++.+..--.+.++ +.|+..-.-..+..+......+++|+
T Consensus 24 k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 34444444443333 233444332 2333344444444444433333332 22333222233333344444444444
Q ss_pred HHHH
Q 018924 141 RIWE 144 (349)
Q Consensus 141 ~~~~ 144 (349)
..+.
T Consensus 99 ~~Lq 102 (284)
T KOG4642|consen 99 KVLQ 102 (284)
T ss_pred HHHH
Confidence 4443
No 416
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=57.77 E-value=82 Score=23.95 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC----CHHHHHHHHHH------HHhhccCChhhHHHHHHHHhccCCH
Q 018924 101 DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG----KKDDVLRIWEL------YKKAVKVLNNGYRNVISSLLKLDDL 170 (349)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~------~~~~~~~~~~~~~~li~~~~~~~~~ 170 (349)
++|+.-|++... +.|+...++..+..+|...+ +..+|...|+. ......|+..+|+.-+..+.
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~----- 124 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA----- 124 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-----
Confidence 444445555554 45666567777777776543 33344444441 22334577777777666553
Q ss_pred HHHHHHHHHHHhcC
Q 018924 171 ESAEKIFEEWESQA 184 (349)
Q Consensus 171 ~~a~~~~~~~~~~~ 184 (349)
+|-++..++.+.+
T Consensus 125 -kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 -KAPELHMEIHKQG 137 (186)
T ss_dssp -THHHHHHHHHHSS
T ss_pred -hhHHHHHHHHHHH
Confidence 3555555555543
No 417
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.01 E-value=98 Score=24.60 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=53.0
Q ss_pred hHHHHHHHH--hhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchH---HHHH
Q 018924 122 AYNVILTLY--GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP---NFLI 196 (349)
Q Consensus 122 ~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~ 196 (349)
.|...+.++ ...+++++|.+.+. ...+.|+- -.-++.++...|+.+.|..+++... |...+. ..++
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~--~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~-----p~l~s~~~~~~~~ 148 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLS--HPSLIPWF--PDKILQALLRRGDPKLALRYLRAVG-----PPLSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhC--CCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcC-----CCCCCHHHHHHHH
Confidence 345555554 34566666666654 11222221 1246666666777777777776642 222222 2222
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924 197 DVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238 (349)
Q Consensus 197 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 238 (349)
.. ..++.+.+|+.+-+...+.. ....+..++..+....
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 23 55677777777665554421 1335556666555433
No 418
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=56.27 E-value=91 Score=24.00 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=51.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHc--CcccchhhHHHHHH-HHhcCCC--HHHHHHHHHHHHHHhcccccCCCCHH----
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKLK--GREIHVKSWYYLAT-GYRQNSQ--IHKAVEAMKKVLAAYQTLVKWKPSVE---- 265 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~-~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~p~~~---- 265 (349)
..-.....|++++|..-++++.+. .++.-...|..+.. +++.++. +-+|.-++.-... +..|...
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~------~~~ps~~EL~V 108 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD------GRLPSPEELGV 108 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc------CCCCCHHHcCC
Confidence 333445667777777777766532 11112334444444 5666654 4466666655554 3344332
Q ss_pred ---HH-HHHHH----------HHHhcCChhhHHHHHHHHhhC
Q 018924 266 ---SL-AACLD----------YFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 266 ---~~-~~ll~----------~~~~~g~~~~a~~~~~~~~~~ 293 (349)
.| +-+.+ -..+.|+++.|.++++-|.+.
T Consensus 109 ~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 109 PPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 11111 125779999999999888764
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.24 E-value=1.2e+02 Score=25.19 Aligned_cols=168 Identities=9% Similarity=-0.008 Sum_probs=87.2
Q ss_pred HHHHHHhhcCCHHHHHHHHH-HHHhhccCChhh-------HHHHHHHHhccCCHHHHHHHHHHHHh----cCCCCCcchH
Q 018924 125 VILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNG-------YRNVISSLLKLDDLESAEKIFEEWES----QALCYDTRIP 192 (349)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~-------~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 192 (349)
-+.+-..+.+++++|+..+. ....|+..|..+ ...+...|...|+...--+......+ -.-+....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 35556667778888888877 555566655543 33456667777766555544433222 1111122233
Q ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHHcCcccch-----hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHH
Q 018924 193 NFLIDVYCR-NGLLEKAENLVNHEKLKGREIHV-----KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVES 266 (349)
Q Consensus 193 ~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 266 (349)
.+|+..+.. ...++....+.....+...+-.. ..=..++..+.+.|++.+|+.+........ ....-+|+..+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~El-Kk~DDK~~Li~ 166 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHEL-KKYDDKINLIT 166 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HhhcCccceee
Confidence 344444332 23456666666655543222111 112345666777777777777777777641 11122344333
Q ss_pred HHHH-HHHHHhcCChhhHHHHHHHHhhC
Q 018924 267 LAAC-LDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 267 ~~~l-l~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
...+ -..|-...++.++..-+..++..
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 2222 23455566666666666665555
No 420
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.12 E-value=1.3e+02 Score=25.89 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChHH---HHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924 50 TYCTRLSAYADASDHEG---IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126 (349)
Q Consensus 50 ~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (349)
+-..++..+...++... |..+++... .... .+...--.++..|...|-.+.|.+.|..+.-+.+..++ .-..+
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l-~~s~-~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DT--L~h~~ 257 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHAL-KKSP-HNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDT--LGHLI 257 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHH--hHHHH
Q ss_pred HHHHhhcCCHHHHH-HHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHH
Q 018924 127 LTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178 (349)
Q Consensus 127 ~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 178 (349)
..-+...|....+. ..++....-..-......-.+....+.|.+.+..++.+
T Consensus 258 ~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 258 LDRLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.98 E-value=70 Score=22.59 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
.+.++|+.|...|+....+.-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888888888777776778888888888888888888886
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.40 E-value=71 Score=22.54 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 242 KAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
.+.++|..|... ++.- -+..|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~-----~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-----GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-----TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555554 4433 23444455555555555555555554
No 423
>PRK10941 hypothetical protein; Provisional
Probab=54.89 E-value=1.2e+02 Score=24.93 Aligned_cols=75 Identities=11% Similarity=0.024 Sum_probs=48.0
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhc--cCChhhHHHHHHHH
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV--KVLNNGYRNVISSL 164 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~ 164 (349)
+.+-.+|.+.++++.|+++.+.+.. ..|+.+.-+.--.-.|.+.|.+..|..=++--.... .|+.......+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 4566778888888888888888876 355554456666667788888888887777222233 34444444444433
No 424
>PRK10941 hypothetical protein; Provisional
Probab=54.31 E-value=1.2e+02 Score=24.87 Aligned_cols=77 Identities=14% Similarity=-0.033 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924 52 CTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130 (349)
Q Consensus 52 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (349)
+.+-.+|.+.++++.|+++.+.+. .... .+..-+.--.-.|.+.|.+..|..=++...+..+..+........+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll-~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALL-QFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 346667888899999999888887 4333 3444455566678888999999888888877655444423444444433
No 425
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=54.02 E-value=73 Score=24.66 Aligned_cols=59 Identities=19% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh--hhhhcC-cchH-HHHHHHHh
Q 018924 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL--DNVQNG-KSNL-ETLRELYG 323 (349)
Q Consensus 265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~~~g-~~a~-~~~~~m~~ 323 (349)
...+.++..|.-.||++.|-++|.-+.+....|......+. .+.+.+ ..+. +.++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 426
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.34 E-value=2.3e+02 Score=27.69 Aligned_cols=229 Identities=12% Similarity=0.023 Sum_probs=120.9
Q ss_pred HhcCChHHHHHHHHHhhcCC---CCCccHH---HHHHHH-HHHhhcCcHHHHHHHHHHHHHhh----cCCcchhhHHHHH
Q 018924 59 ADASDHEGIDKILTMMEADP---NVALDWV---IYATVG-NGYGKVGLLDKALAMLKKSEEQI----KGAKVNSAYNVIL 127 (349)
Q Consensus 59 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~---~~~~li-~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~ 127 (349)
....++++|..++.++.... +..+... .++.|- ......|+++.|.++-+.....- ..+.. ..+.++.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~-~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI-VALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh-hhhhhhh
Confidence 34678999998888875322 2222222 233332 23345788899998888776532 12333 5677788
Q ss_pred HHHhhcCCHHHHHHHHH-HHHhhccCChh---hHHHH--HHHHhccCCHH--HHHHHHHHHHhcC---CC---CCcchHH
Q 018924 128 TLYGKYGKKDDVLRIWE-LYKKAVKVLNN---GYRNV--ISSLLKLDDLE--SAEKIFEEWESQA---LC---YDTRIPN 193 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~-~~~~~~~~~~~---~~~~l--i~~~~~~~~~~--~a~~~~~~~~~~~---~~---~~~~~~~ 193 (349)
.+..-.|++++|..+.. .....-.-+.. .|..+ ...+...|+.. +....|....... .+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999999887 22222222332 22222 23344666433 2333333333211 01 1122344
Q ss_pred HHHHHHHhc-CcHHHHHHHHHHHHHcCcccchhhH--HHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHH
Q 018924 194 FLIDVYCRN-GLLEKAENLVNHEKLKGREIHVKSW--YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270 (349)
Q Consensus 194 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 270 (349)
.+..++.+. +...++..-+.-.......|-...+ ..|+......|+.++|...+.++....... +..++...-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~-~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG-QYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-CCCchHHHHHHH
Confidence 455555441 2223333333333333333322222 367788888999999999999988762211 122333332333
Q ss_pred HHH--HHhcCChhhHHHHHHH
Q 018924 271 LDY--FKDEGDIGGAENFIEL 289 (349)
Q Consensus 271 l~~--~~~~g~~~~a~~~~~~ 289 (349)
++. ....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 332 3456777777766655
No 427
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.34 E-value=2e+02 Score=27.08 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=24.7
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (349)
.+|-.|.++|++++|.++..+.... ..... ..+-..+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~-~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIE-RSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTT-THHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchh-HHHHHHHHHHHhC
Confidence 3666677777777777777554432 22333 4666666666654
No 428
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.27 E-value=27 Score=21.25 Aligned_cols=49 Identities=8% Similarity=-0.058 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924 46 YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96 (349)
Q Consensus 46 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 96 (349)
|....++.++..+++..-.+.++..+.+.. ..|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al-~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRAL-QRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHHHH
Confidence 455566666666666666666666666666 4344 455555544544444
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.71 E-value=1.6e+02 Score=25.76 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 018924 50 TYCTRLSAYADASDHEGIDKILTM 73 (349)
Q Consensus 50 ~~~~ll~~~~~~~~~~~a~~~~~~ 73 (349)
.+..+..-|..+|+++.|++.|.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhh
Confidence 344444444444555555544444
No 430
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.52 E-value=1.3e+02 Score=28.27 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=52.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHH------HHHHHHHhhcCCCCCccHHHHHH
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENG--ITYDRYTYCTRLSAYADASDHEG------IDKILTMMEADPNVALDWVIYAT 89 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~ 89 (349)
+|..+|..+|++..+.++++.....+ -+.=...||..|+...+.|.++- +...+++. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 79999999999999999999988752 23234578888999999998653 33444433 34566677776
Q ss_pred HHHHHh
Q 018924 90 VGNGYG 95 (349)
Q Consensus 90 li~~~~ 95 (349)
|+.+-.
T Consensus 109 l~~~sl 114 (1117)
T COG5108 109 LCQASL 114 (1117)
T ss_pred HHHhhc
Confidence 665543
No 431
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.00 E-value=46 Score=19.27 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=14.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
+.-++.+.|++++|.++.+.+++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 445566677777777777777643
No 432
>PRK09857 putative transposase; Provisional
Probab=51.46 E-value=1.2e+02 Score=25.34 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcc
Q 018924 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEE 331 (349)
Q Consensus 267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~ 331 (349)
+..++......|+.++..++++.+.+..+......-++. -+.+.| +++.++.++|...|+.++.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~I 276 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADI 276 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 455555556677777778888777766444444444556 666677 66888889998888876643
No 433
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=51.38 E-value=52 Score=19.77 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=7.7
Q ss_pred hcCChhHHHHHHHHHH
Q 018924 25 KTGNFEKLDSLMHEME 40 (349)
Q Consensus 25 ~~g~~~~a~~~~~~m~ 40 (349)
..|++=+|-++++.+-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3455555555555554
No 434
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.23 E-value=79 Score=29.35 Aligned_cols=91 Identities=10% Similarity=0.027 Sum_probs=60.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC------HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS------VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (349)
.||..-+ ..+..++..+.++|..-... +..| ......+--+|....+.|.|.++++++.+.++.++.
T Consensus 357 LWn~A~~-~F~~~~Y~~s~~~y~~Sl~~------i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 357 LWNTAKK-LFKMEKYVVSIRFYKLSLKD------IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHh------ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence 3444333 34566788888888876653 2222 233555666788899999999999999998776665
Q ss_pred hHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 300 LQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 300 ~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
+--.+. ..+..| ++|+........
T Consensus 430 ~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 430 CQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 555555 555555 778777766543
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.82 E-value=1.7e+02 Score=25.51 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHhh
Q 018924 21 KLYYKTGNFEKLDSLMHEMEENGITYDRY--TYCTRLSAYAD--ASDHEGIDKILTMME 75 (349)
Q Consensus 21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~ 75 (349)
..+...+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++...
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3455788999999999998887 665554 44445555543 566778888888776
No 436
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.79 E-value=79 Score=21.65 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=47.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHH
Q 018924 26 TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA 105 (349)
Q Consensus 26 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 105 (349)
....++|..+.+.+...+-. ....--+-+..+...|++++| +..-. . ...||...|.+| +-.+.|.-+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~-~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQ-C-HCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHT-T-S--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcc-c-CCCccHHHHHHH--HHHhhccHHHHHH
Confidence 45677888888888776532 333333445566778888888 22222 2 334787776544 3467788888888
Q ss_pred HHHHHHHhh
Q 018924 106 MLKKSEEQI 114 (349)
Q Consensus 106 ~~~~~~~~~ 114 (349)
.+.++..+|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 888775543
No 437
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.60 E-value=84 Score=22.64 Aligned_cols=76 Identities=4% Similarity=-0.124 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEE-NGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
+...|...+-.--...+.++-+.+++...+ ....-......-|.-++.+.++++.+.++.+.+. ..+||..--..|
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll---~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL---ETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH---hhCCCcHHHHHH
No 438
>PRK09462 fur ferric uptake regulator; Provisional
Probab=50.52 E-value=83 Score=22.89 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCCh
Q 018924 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI 280 (349)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 280 (349)
.-.|.++++.+.+. +...+..|....|..+...|-+
T Consensus 33 h~sa~eI~~~l~~~-----~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 33 HVSAEDLYKRLIDM-----GEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHHCCCE
Confidence 44445555555444 4444444444444444444443
No 439
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=50.28 E-value=83 Score=24.63 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhhcCCCCC-------ccHHHHHHHHHHHhhcC---------cHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924 64 HEGIDKILTMMEADPNVA-------LDWVIYATVGNGYGKVG---------LLDKALAMLKKSEEQIKGAKVNSAYNVIL 127 (349)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (349)
.+.|..++..|- -..++ ....-|..+..+|++.| +.+.-.++++...+.|++.-.++.|+.+|
T Consensus 137 vetAiaml~dmG-~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 137 IETAIAMLKDMG-GSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred HHHHHHHHHHcC-CCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 566777777774 22221 34455667777777776 33445555555555555554445666666
Q ss_pred HHHhhcCCHHHHHHHHH
Q 018924 128 TLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~ 144 (349)
+--...-++++..+++.
T Consensus 216 Dk~tG~TrpedV~~l~~ 232 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLA 232 (236)
T ss_pred ccccCCCCHHHHHHHHH
Confidence 55555555555555555
No 440
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.42 E-value=1.8e+02 Score=25.52 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=41.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc--C----C-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQ--A----L-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 216 (349)
...+++.++-.||+..|.++++.+.-. + + .-...++.-+.-+|.-.+++.+|.+.|..+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888888765421 1 1 1234456667778888889999998888665
No 441
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=49.13 E-value=60 Score=20.27 Aligned_cols=33 Identities=6% Similarity=0.019 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
+.+.|..++..+..... .++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~dek-RsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEK-RSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhh-cChHHHHHHHHHHHHc
Confidence 45666666666665332 3667777777665554
No 442
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.83 E-value=1.9e+02 Score=25.44 Aligned_cols=147 Identities=12% Similarity=0.042 Sum_probs=78.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQ--ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 234 (349)
...+++...-.|+.....+.++.+.+. |-.|...+-.-+.-+|.-.+++.+|.+.|-.+.-. +......+...-..|
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly-Iqrtks~~~~~~y~~ 316 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQY 316 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhhH
Confidence 445677777788877767777766542 22333222234677888889999999998766532 221222221111112
Q ss_pred hc-CCCHHHHHHHHHHHHHHhcccccCCC---CHHHHHHHHHHH------HhcCChhhHHHHHHHHhhCCC-CCchhHHH
Q 018924 235 RQ-NSQIHKAVEAMKKVLAAYQTLVKWKP---SVESLAACLDYF------KDEGDIGGAENFIELLNDKGF-IPTDLQDK 303 (349)
Q Consensus 235 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~p---~~~~~~~ll~~~------~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 303 (349)
.. ....+....++.-.+. ..| |......+-..| ...|+.+.-..+|.-...... |....|..
T Consensus 317 d~inKq~eqm~~llai~l~-------~yPq~iDESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dg 389 (525)
T KOG3677|consen 317 DMINKQNEQMHHLLAICLS-------MYPQMIDESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDG 389 (525)
T ss_pred hhhhhhHHHHHHHHHHHHH-------hCchhhhHHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCccccCCCCccccc
Confidence 22 2344444445444442 233 333333333332 245777777777766655533 55556666
Q ss_pred Hh-hhhhcC
Q 018924 304 LL-DNVQNG 311 (349)
Q Consensus 304 l~-~~~~~g 311 (349)
+. .|.+..
T Consensus 390 v~~~y~keP 398 (525)
T KOG3677|consen 390 VLPNYHKEP 398 (525)
T ss_pred ccccccccH
Confidence 66 555544
No 443
>PHA03100 ankyrin repeat protein; Provisional
Probab=48.68 E-value=2e+02 Score=25.77 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=9.4
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 018924 53 TRLSAYADASDHEGIDKIL 71 (349)
Q Consensus 53 ~ll~~~~~~~~~~~a~~~~ 71 (349)
..+...++.|+.+-+..++
T Consensus 37 t~L~~A~~~~~~~ivk~Ll 55 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILL 55 (480)
T ss_pred hhhhhhhccCCHHHHHHHH
Confidence 3444455666655443333
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.66 E-value=1.9e+02 Score=25.45 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCC-C----C-CccHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 018924 51 YCTRLSAYADASDHEGIDKILTMMEADP-N----V-ALDWVIYATVGNGYGKVGLLDKALAMLKKS 110 (349)
Q Consensus 51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 110 (349)
...|++.++-.||+..|+++++.+.-.. + + .-...+|--+.-+|.-.+++.+|.++|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666655542110 0 1 112233344555555666666666666554
No 445
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.24 E-value=2.1e+02 Score=25.85 Aligned_cols=107 Identities=12% Similarity=-0.015 Sum_probs=70.4
Q ss_pred HHHhhcCCHHHHHHHHH-H---HHhhccCC-----hhhHHHHHHHHhccCCHHHHHHHHHHHHh-------cCCCCCc--
Q 018924 128 TLYGKYGKKDDVLRIWE-L---YKKAVKVL-----NNGYRNVISSLLKLDDLESAEKIFEEWES-------QALCYDT-- 189 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~-~---~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 189 (349)
..+.-.|++..|.+++. . ...|...+ -..||.+.-.+.+.|.+..+..+|.+..+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556799999998886 1 12222211 12356666667778888877777777663 4544422
Q ss_pred ---------chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924 190 ---------RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236 (349)
Q Consensus 190 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 236 (349)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|-.|..+|.-
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2344 334567889999999999887764 34588899999988853
No 446
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.61 E-value=1.7e+02 Score=24.70 Aligned_cols=97 Identities=8% Similarity=-0.073 Sum_probs=55.0
Q ss_pred ccHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC
Q 018924 11 RTTVVYNSMLKLYYKTGN------------FEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP 78 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~------------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 78 (349)
-|+.+|-.++..--..-. .+.-+.++++.++.+. -+...+...+..+.+..+.++..+-++++. ..
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l-~~ 94 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELL-FK 94 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HH
Confidence 367777777764433221 3345667777766643 355566667777777777777777777776 32
Q ss_pred CCCccHHHHHHHHHHHhh---cCcHHHHHHHHHHH
Q 018924 79 NVALDWVIYATVGNGYGK---VGLLDKALAMLKKS 110 (349)
Q Consensus 79 ~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~ 110 (349)
.. -+...|...+..... .-.++....+|.+.
T Consensus 95 ~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 NP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 22 345555555544333 22345555555444
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.28 E-value=1.5e+02 Score=23.89 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=35.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh----cC-CCCCcchHHHHHHHHHhcCcHHHHHHHHHHH
Q 018924 158 RNVISSLLKLDDLESAEKIFEEWES----QA-LCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215 (349)
Q Consensus 158 ~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (349)
..+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3556667777777777777776642 12 1233445556667777777777766655444
No 448
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.13 E-value=91 Score=21.32 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555555544
No 449
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.99 E-value=1.8e+02 Score=27.18 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=58.1
Q ss_pred HhhcCCHHHHHHHHHHHHhhccCCh------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 018924 130 YGKYGKKDDVLRIWELYKKAVKVLN------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203 (349)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 203 (349)
..+..++..+.+.|..-..-++.|. .....+.-+|.+..+.|.|.+++++..+.. +.+..+---+..+....|
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhc
Confidence 3456788888888883333333332 235566677788889999999999998853 223333334556667778
Q ss_pred cHHHHHHHHHHHH
Q 018924 204 LLEKAENLVNHEK 216 (349)
Q Consensus 204 ~~~~a~~~~~~~~ 216 (349)
.-++|........
T Consensus 443 ~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 443 KSEEALTCLQKIK 455 (872)
T ss_pred chHHHHHHHHHHH
Confidence 8888888776654
No 450
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=46.84 E-value=51 Score=22.62 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=20.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChh
Q 018924 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIG 281 (349)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 281 (349)
..+..-.|.++++.+.+. +..++..|....++.+...|-+.
T Consensus 12 ~~~~~~sa~ei~~~l~~~-----~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 12 ESDGHLTAEEIYERLRKK-----GPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred hCCCCCCHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhCCCEE
Confidence 334444555555555554 55555555555555555555443
No 451
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.13 E-value=91 Score=27.72 Aligned_cols=107 Identities=14% Similarity=-0.017 Sum_probs=69.1
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD 169 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (349)
-.+-+.+.+.++.|..++.+.++ ..|+....|..=..++.+.+++..|+.=+.......+--...|..-..++.+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 45566777889999999999887 4666634444444788888888888765552111112223345555566667777
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 018924 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYC 200 (349)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 200 (349)
+.+|...|+.... +.|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 7788887777666 5677666665555543
No 452
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=46.00 E-value=1.5e+02 Score=23.39 Aligned_cols=68 Identities=15% Similarity=0.034 Sum_probs=38.1
Q ss_pred hHHHHHHHHhcCCCHH-------HHHHHHHHHHHHhcccccC-CCCHHHHHHH-HHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 226 SWYYLATGYRQNSQIH-------KAVEAMKKVLAAYQTLVKW-KPSVESLAAC-LDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~-------~a~~~~~~~~~~~~~~~~~-~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
.+..+...|-..|+.+ .|.+.|.+.... ...+. .-+..+...| .....+.|+.++|.+.|..+....-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~--e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN--EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh--CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3444555566666644 455555555543 11111 1133343333 3456788999999999998887643
No 453
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.81 E-value=1.5e+02 Score=23.50 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhhccC---Chhh--HHHHHHHHhccCCHHHHHHHHHHHH
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKV---LNNG--YRNVISSLLKLDDLESAEKIFEEWE 181 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~--~~~li~~~~~~~~~~~a~~~~~~~~ 181 (349)
-+|.|+--|.....+.+|.+.|. ...+++| |..+ -..-|......|+.+.|.+....+-
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa-~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFA-KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhc-cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 44555555555555555555554 2223322 1111 2234445556666666666665543
No 454
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.59 E-value=1.1e+02 Score=21.70 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+..++|..|...++....+.-|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777766665554556666666677777777777765
No 455
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.42 E-value=1.7e+02 Score=24.04 Aligned_cols=186 Identities=18% Similarity=0.026 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc----cCCHHHH
Q 018924 98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK----LDDLESA 173 (349)
Q Consensus 98 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a 173 (349)
+++..+...+......+........-...........+...|.++|+ .............+...|.. ..+..+|
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHH
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhc-----CcHH--HHHHHHHHHHHcCcccchhhHHHHHHHHhc----CCCHHH
Q 018924 174 EKIFEEWESQALCYDTRIPNFLIDVYCRN-----GLLE--KAENLVNHEKLKGREIHVKSWYYLATGYRQ----NSQIHK 242 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~ 242 (349)
..+++..-+.|..+.......+...|..- -..+ .|...|.+....+ +......+...|.. ..++++
T Consensus 133 ~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 133 LKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHH
Q ss_pred HHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC---------------ChhhHHHHHHHHhhCCCCC
Q 018924 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG---------------DIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g---------------~~~~a~~~~~~~~~~~~~~ 297 (349)
|..+|+...+. |. ......+- .+...| +...|...+......+.+.
T Consensus 210 A~~wy~~Aa~~-----g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 210 AFRWYKKAAEQ-----GD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHHC-----CC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 456
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.19 E-value=2.4e+02 Score=25.55 Aligned_cols=281 Identities=14% Similarity=0.050 Sum_probs=146.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH--HHHHHHhhcCC---C-------CCccHHHHHHHH
Q 018924 24 YKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI--DKILTMMEADP---N-------VALDWVIYATVG 91 (349)
Q Consensus 24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~---~-------~~~~~~~~~~li 91 (349)
...+.++..++++..+...|.....+.++.....|.+.|....- ++-++.+.... + .......+....
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 34688999999999999988777777788888888888765432 22222222111 1 111112222233
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhh--cCCcc-hhhHHHHHHHHhhcCCHHHHHHHHH----HHHhh-ccCCh--hhHHH--
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQI--KGAKV-NSAYNVILTLYGKYGKKDDVLRIWE----LYKKA-VKVLN--NGYRN-- 159 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~-~~~~~--~~~~~-- 159 (349)
-.|.....+..|+++.......- ..... ..........+......++|+.++. +...+ ..+.. .+-+.
T Consensus 108 Vi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~ 187 (696)
T KOG2471|consen 108 VIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLL 187 (696)
T ss_pred eeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhc
Confidence 33444555566666555543321 00011 0112223344556666777776655 11111 11111 11111
Q ss_pred ------------------------HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH--HHHhcCcHHHHHHHHH
Q 018924 160 ------------------------VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID--VYCRNGLLEKAENLVN 213 (349)
Q Consensus 160 ------------------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~ 213 (349)
-+.++....+...+..-.+.... ...|... ..++. .+.-.|++.+|.+++.
T Consensus 188 kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~-~l~LKsq~eY~~gn~~kA~KlL~ 264 (696)
T KOG2471|consen 188 KTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSM-ALLLKSQLEYAHGNHPKAMKLLL 264 (696)
T ss_pred ccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcH-HHHHHHHHHHHhcchHHHHHHHH
Confidence 11222222222222221111111 1112222 22332 3456789999988876
Q ss_pred HHH---HcCcccch-----hhHHHHHHHHhcCCCHHHHHHHHHHHHHH--hcccccCCCCH-----------HHHHHHHH
Q 018924 214 HEK---LKGREIHV-----KSWYYLATGYRQNSQIHKAVEAMKKVLAA--YQTLVKWKPSV-----------ESLAACLD 272 (349)
Q Consensus 214 ~~~---~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~p~~-----------~~~~~ll~ 272 (349)
..- ..|...++ ..||.|...+.+.|.+.-+..+|.++++. .+-..|++|.. .+|++ --
T Consensus 265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNc-G~ 343 (696)
T KOG2471|consen 265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNC-GL 343 (696)
T ss_pred hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhh-hH
Confidence 542 22322221 23466666667778888888888888752 11112444431 23333 22
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhh
Q 018924 273 YFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNV 308 (349)
Q Consensus 273 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~ 308 (349)
.|...|+.-.|.+.|.........++..|-.+. ++.
T Consensus 344 ~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 467899999999999999888778899999888 554
No 457
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.03 E-value=2.6e+02 Score=27.40 Aligned_cols=157 Identities=11% Similarity=0.001 Sum_probs=92.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc
Q 018924 54 RLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133 (349)
Q Consensus 54 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (349)
+|.-+-+.|-.+-|+.+.+.-.. -...+..+|+++.|++.-.++ -+. .+|..|.......
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~t-------------RF~LaLe~gnle~ale~akkl------dd~-d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERT-------------RFELALECGNLEVALEAAKKL------DDK-DVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcch-------------heeeehhcCCHHHHHHHHHhc------CcH-HHHHHHHHHHHHh
Confidence 34444455666655554433221 223456789999888876653 222 6899999999999
Q ss_pred CCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213 (349)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 213 (349)
|+.+-|+..|+... .|..+--.|.-.|+.++-.++......++ |.... +..+ .-.|++++-.+++.
T Consensus 686 gn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~--~qna-lYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQ--FQNA-LYLGDVKERVKILE 751 (1202)
T ss_pred cchHHHHHHHHHhh--------hhhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHH--HHHH-HHhccHHHHHHHHH
Confidence 99999998888221 24444445677888888777766665432 22211 1111 22467776666665
Q ss_pred HHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 214 HEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
..-. . +..|.. -..+|.-++|.++..+....
T Consensus 752 n~g~---~--~laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 752 NGGQ---L--PLAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred hcCc---c--cHHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 4332 1 112211 13467777888888777653
No 458
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.72 E-value=21 Score=30.00 Aligned_cols=118 Identities=14% Similarity=-0.016 Sum_probs=72.4
Q ss_pred HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCcHHHH
Q 018924 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT-RIPNFLIDVYCRNGLLEKA 208 (349)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 208 (349)
....|.++.|++.|.......++....|..-.+++.+.+++..|++=+....+. .||. .-|-.=-.+-...|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 345677888888887444555566667777777888888888888877777664 3443 2333333344457888888
Q ss_pred HHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
...|....+.+..+....| +=...-+.+..++-...+.+..
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHH
Confidence 8888888877665444333 2233334444444444444433
No 459
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=44.60 E-value=2.2e+02 Score=25.24 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=44.5
Q ss_pred hCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HH-----HHhcCChHHHHHHHHHhhcCC
Q 018924 7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRL---SA-----YADASDHEGIDKILTMMEADP 78 (349)
Q Consensus 7 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~-----~~~~~~~~~a~~~~~~~~~~~ 78 (349)
..+.||..+.|.+.+.++..-..+-...+|+...+.+-+ =...+..++ ++ -.+...-++++++++.|....
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDP-F~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADP-FLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc-eehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 446677777777666666666666666666666665311 111111111 11 012233556666666665333
Q ss_pred CCCccHHHHHHHHHHHhh
Q 018924 79 NVALDWVIYATVGNGYGK 96 (349)
Q Consensus 79 ~~~~~~~~~~~li~~~~~ 96 (349)
.+ -|..-+.+|...|+.
T Consensus 256 ~~-eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SV-EDVPDFFSLAQYYSD 272 (669)
T ss_pred cc-ccchhHHHHHHHHhh
Confidence 33 344444455555543
No 460
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.21 E-value=1.5e+02 Score=22.94 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH---h------cccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 229 YLATGYRQNSQIHKAVEAMKKVLAA---Y------QTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 229 ~li~~~~~~~~~~~a~~~~~~~~~~---~------~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
+++..|.+..+|.++.++++.+-+. + ....+..+.-...+.....|.+.|.++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3455566666666666666666554 0 0111233444556777778889999999998887
No 461
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.93 E-value=2.1e+02 Score=24.70 Aligned_cols=104 Identities=13% Similarity=-0.005 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhccC-ChhhHHHHHHHHh-ccCCHHHHHHHHHHHHhc------CCCCCcchHHHHH
Q 018924 125 VILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLL-KLDDLESAEKIFEEWESQ------ALCYDTRIPNFLI 196 (349)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~ 196 (349)
..|..+.+.|-+..|+++.+....-.+. |+.....+|..|+ +.++++.-.++.+..... ..-|+ ..|+..+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aL 186 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIAL 186 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHH
Confidence 3456677889999999999944443343 6777777787775 778888888888776541 11233 2444333
Q ss_pred HHHHhcCcH---------------HHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924 197 DVYCRNGLL---------------EKAENLVNHEKLKGREIHVKSWYYLATGY 234 (349)
Q Consensus 197 ~~~~~~~~~---------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 234 (349)
++...++. +.|...+.+.... -+.....|+..+
T Consensus 187 -A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l 234 (360)
T PF04910_consen 187 -AYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKL 234 (360)
T ss_pred -HHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHh
Confidence 33344444 6777777666552 233444555544
No 462
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.68 E-value=1.6e+02 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=18.0
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhh
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQI 114 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~ 114 (349)
.+.....+.|+.++|.+.|.++...+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45556667777777777777777643
No 463
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.36 E-value=2e+02 Score=24.29 Aligned_cols=122 Identities=12% Similarity=0.008 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc---CCCHHHHHHHH
Q 018924 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ---NSQIHKAVEAM 247 (349)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~ 247 (349)
+.-..+++++++.+ +.+....-.++..+.+..+.+...+.++++....+. +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666666653 344555566666666666777777777777765432 45566666654433 23455555555
Q ss_pred HHHHHHhcccc-cC------CCC--H---HHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924 248 KKVLAAYQTLV-KW------KPS--V---ESLAACLDYFKDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 248 ~~~~~~~~~~~-~~------~p~--~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 294 (349)
.+.++...... +. .|+ . ..+..+..-+...|-.+.|..+++.+.+.+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55554311000 10 111 1 122223333467888899999888887763
No 464
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.34 E-value=2.8e+02 Score=25.82 Aligned_cols=217 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH-------H
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITY-DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW-------V 85 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~ 85 (349)
..+..++++....|-.....-+.+.+....+.+ .....-..+-.....-..+-...+++-+. .....+.. .
T Consensus 341 ~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~-~~~~~~~~~l~~sa~l 419 (574)
T smart00638 341 KARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAE-SPEVQKQPYLRESALL 419 (574)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhc-CccccccHHHHHHHHH
Q ss_pred HHHHHHHHHhhcCcH------HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHH
Q 018924 86 IYATVGNGYGKVGLL------DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN 159 (349)
Q Consensus 86 ~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (349)
+|.++++-+|..... ++....+.+............--...+.++...|.......+-.........+...-..
T Consensus 420 ~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~ 499 (574)
T smart00638 420 AYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLA 499 (574)
T ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHH
Q ss_pred HHHHHhcc--CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924 160 VISSLLKL--DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234 (349)
Q Consensus 160 li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 234 (349)
.+.++.+. ...+.+..++-.+....-.+...=..+++......=.......+.+.+... |+...-+.+.+.+
T Consensus 500 Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E---~~~QV~sfv~S~l 573 (574)
T smart00638 500 AILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE---PNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc---CcHHHHHHhHHhh
No 465
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.21 E-value=47 Score=16.90 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHcCcccchhhHH
Q 018924 204 LLEKAENLVNHEKLKGREIHVKSWY 228 (349)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~ 228 (349)
.++.|..+|++.... .|++.+|-
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHH
Confidence 355666666666653 35555553
No 466
>PHA03100 ankyrin repeat protein; Provisional
Probab=42.55 E-value=2.5e+02 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=13.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDR 48 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 48 (349)
.+...++.|+.+ +++.+.+.|..|+.
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINS 63 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCC
Confidence 344445555544 44455556666554
No 467
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=42.42 E-value=1.1e+02 Score=21.10 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHC-CCCC-CHHH
Q 018924 30 EKLDSLMHEMEEN-GITY-DRYT 50 (349)
Q Consensus 30 ~~a~~~~~~m~~~-~~~p-~~~~ 50 (349)
+++.+.+.++.+. |+.| |...
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~ 28 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILC 28 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHH
Confidence 4555666666543 6666 4433
No 468
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=42.39 E-value=1.1e+02 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=11.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC
Q 018924 21 KLYYKTGNFEKLDSLMHEMEENG 43 (349)
Q Consensus 21 ~~~~~~g~~~~a~~~~~~m~~~~ 43 (349)
+.+.++...++|+++++.|.++|
T Consensus 69 D~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 69 DYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33344444455555555555444
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.60 E-value=1.5e+02 Score=22.25 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=33.5
Q ss_pred HHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhh
Q 018924 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 282 (349)
+...|++++..= ..++..+...++.-.|.++++.+.+. +..++..|....|..+...|-+.+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~-----~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREA-----EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhh-----CCCCCcchHHHHHHHHHHCCCEEE
Confidence 334455443332 23444444445555666777776665 555566666666666666665443
No 470
>PRK09857 putative transposase; Provisional
Probab=41.54 E-value=2.1e+02 Score=23.88 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCC
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVL 153 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~ 153 (349)
..++......|+.++..++++.+.+..+ ... ...-++..-+...|.-++++++.+ |...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~-~~~-e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSP-KHK-ESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCc-ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444444455555555555555554321 112 233345555555555555665555 555555543
No 471
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.18 E-value=2e+02 Score=23.50 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=15.2
Q ss_pred HHHhcCChhhHHHHHHHHhhC
Q 018924 273 YFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 273 ~~~~~g~~~~a~~~~~~~~~~ 293 (349)
-|...+++..|...+....+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 356678899998887666544
No 472
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.99 E-value=1.1e+02 Score=20.58 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=12.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 018924 124 NVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~ 144 (349)
.-|.-.|.+.|+.+.|.+-|+
T Consensus 76 AhLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHH
Confidence 344455556666666666665
No 473
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.24 E-value=1.9e+02 Score=23.14 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=23.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh-cCcHHHHHHHHHHHH
Q 018924 54 RLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK-VGLLDKALAMLKKSE 111 (349)
Q Consensus 54 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~ 111 (349)
+++.+-+.++++++...+.++. ..+...+..-.+.|..+|-. .|....+.+++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~-~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLI-EMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHH-HTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3344445555555555555554 33333444444444444422 233334444444443
No 474
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.91 E-value=51 Score=22.86 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhh
Q 018924 229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 282 (349)
.++..+...+..-.|.++++.+.+. +...+..|.-.-|+.+.+.|-+..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~-----~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKK-----GPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHT-----TTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhc-----cCCcCHHHHHHHHHHHHHCCeEEE
Confidence 3444444444455566666666655 666666666566666666665544
No 475
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.62 E-value=2.6e+02 Score=24.41 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=34.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHH--hcCChHHHHHHHHHh
Q 018924 21 KLYYKTGNFEKLDSLMHEMEENGITYDRYTY----CTRLSAYA--DASDHEGIDKILTMM 74 (349)
Q Consensus 21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~--~~~~~~~a~~~~~~~ 74 (349)
..+.+.+++..|.++|+++.+..++|+...+ ..+..+|. ..-++++|.+.++.+
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 3556788899999999999887665555433 23333333 245667777777653
No 476
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=39.41 E-value=66 Score=28.34 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=86.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC------cc---cchhhHHHHHHHH---
Q 018924 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG------RE---IHVKSWYYLATGY--- 234 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~---~~~~~~~~li~~~--- 234 (349)
.+.+++-.+.++.+.+.| .+|. ...-++.|.+.++++.|.+.+.+-.+.| .+ .....+..++.+.
T Consensus 24 ~~~~~e~~~~l~~l~~~g-~~dv--l~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~P 100 (428)
T cd00245 24 FPLLEEHIELLRTLQEEG-AADV--LPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFP 100 (428)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCe--eccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCC
Confidence 345667777777777765 3343 3345677888888888887777654322 11 1112333333332
Q ss_pred --hcCCCHHHHHHHHHHHHHHhcccccCCCC---HHHHHHHHHHHHhcCChhhHHHHH-------HHHhhCCC-CCchhH
Q 018924 235 --RQNSQIHKAVEAMKKVLAAYQTLVKWKPS---VESLAACLDYFKDEGDIGGAENFI-------ELLNDKGF-IPTDLQ 301 (349)
Q Consensus 235 --~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~-------~~~~~~~~-~~~~~~ 301 (349)
.++|. ..+..+++-+... |+.-. ..+|+. -|.+.-.++++..-| ....+.|+ .+.+++
T Consensus 101 lqvRhGt-~d~~~l~e~~~a~-----g~~a~egg~isy~~---py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~f 171 (428)
T cd00245 101 VQVRHGT-PDARLLAEIAIAS-----GFDATEGGPISYNL---PYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPF 171 (428)
T ss_pred EeeccCC-ccHHHHHHHHHHh-----Ccccccccceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCC
Confidence 23333 3445555555554 43322 122221 122333344444444 22233444 355555
Q ss_pred HHHh-hhhhcC-cchHHHHHHHHhCCCCCCcccccCCCCChhHHHHHhc
Q 018924 302 DKLL-DNVQNG-KSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEKA 348 (349)
Q Consensus 302 ~~l~-~~~~~g-~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~ 348 (349)
.-+. .++--. ..|+.+++.+...|...+..++... .--++++++|
T Consensus 172 g~l~~~l~pptla~aiaylea~la~glgV~~lS~~f~--~~~n~~qDIA 218 (428)
T cd00245 172 GPLTGTLVPPSILIAIQILEALLAAEQGVKSISVGYA--QQGNLTQDIA 218 (428)
T ss_pred cCcccCcCCcHHHHHHHHHHHHHHccCCCCEEEEEee--cCCCHHHHHH
Confidence 5555 555555 7788888888888877777554332 3334444443
No 477
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=39.19 E-value=85 Score=22.60 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=14.8
Q ss_pred hcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 60 DASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
+.|-..+...++++|. ..|+..+...|+..
T Consensus 121 ~kgLisk~Kpild~LI-~~GF~iS~~~~eei 150 (157)
T COG2405 121 SKGLISKDKPILDELI-EKGFRISRSILEEI 150 (157)
T ss_pred HcCcccchHHHHHHHH-HhcCcccHHHHHHH
Confidence 3344444555555555 44555555555433
No 478
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=38.45 E-value=3.7e+02 Score=25.84 Aligned_cols=73 Identities=16% Similarity=-0.010 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCC---CC----------ccHHHHHHHHHHHhhcCcHHHHHHHHH
Q 018924 42 NGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPN---VA----------LDWVIYATVGNGYGKVGLLDKALAMLK 108 (349)
Q Consensus 42 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~ 108 (349)
.|+..+......++... .|+...++.+++++. ..+ +. .+......|+.++.+ ++...++.+++
T Consensus 194 Egi~id~eAL~~Ia~~A--~GslRdAlnLLDqai-a~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~ 269 (709)
T PRK08691 194 EKIAYEPPALQLLGRAA--AGSMRDALSLLDQAI-ALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQ 269 (709)
T ss_pred cCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHH-HhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 46666666665555433 477777777776654 211 11 111222334444443 66777777777
Q ss_pred HHHHhhcCCc
Q 018924 109 KSEEQIKGAK 118 (349)
Q Consensus 109 ~~~~~~~~~~ 118 (349)
++...|..+.
T Consensus 270 ~L~~~G~d~~ 279 (709)
T PRK08691 270 EMAACAVGFD 279 (709)
T ss_pred HHHHhCCCHH
Confidence 7776655433
No 479
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.97 E-value=2.1e+02 Score=22.92 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=39.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHhh
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD-ASDHEGIDKILTMME 75 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~ 75 (349)
-+...+-+.|+++++...+.++...+...+..--+.+..+|-. .|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4667788899999999999999998877777777766666633 344455555555543
No 480
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.87 E-value=2.8e+02 Score=24.24 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=27.9
Q ss_pred HhhcCCHHHHHHHHH-HHHhhccCChh--hHHHHHHHHh--ccCCHHHHHHHHHHHHh
Q 018924 130 YGKYGKKDDVLRIWE-LYKKAVKVLNN--GYRNVISSLL--KLDDLESAEKIFEEWES 182 (349)
Q Consensus 130 ~~~~~~~~~a~~~~~-~~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~ 182 (349)
+.+.+++..|.++++ .... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 346677777777777 3333 444333 2333334332 45566667666666554
No 481
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.17 E-value=80 Score=21.48 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 018924 17 NSMLKLYYKTGNFEKLDSLMHEME 40 (349)
Q Consensus 17 ~~li~~~~~~g~~~~a~~~~~~m~ 40 (349)
..++..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456677888899999988887753
No 482
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.78 E-value=1.2e+02 Score=19.76 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 34 SLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 34 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
++|+.....|+..|+..|..++......--.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777777777888888888877776666666666667777665
No 483
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.02 E-value=79 Score=20.21 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=21.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENG 43 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~ 43 (349)
++++.+.++.-.++|+++++.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35666777888899999999999887
No 484
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=35.82 E-value=91 Score=19.47 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=24.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 018924 24 YKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61 (349)
Q Consensus 24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 61 (349)
...|+.+.+.+++++....|..|.......+..+..+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34677778888888877777766665555555554443
No 485
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.60 E-value=2.7e+02 Score=23.44 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcCChhhH
Q 018924 265 ESLAACLDYFKDEGDIGGA 283 (349)
Q Consensus 265 ~~~~~ll~~~~~~g~~~~a 283 (349)
.+|.-|+.+++.+|+.+..
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 4567777777777776654
No 486
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.51 E-value=3.7e+02 Score=24.97 Aligned_cols=120 Identities=12% Similarity=0.003 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHhhccCCh------------hhHHHHHHHHhccCCHHHHHHHHHHHH-------hcCCCC------
Q 018924 133 YGKKDDVLRIWELYKKAVKVLN------------NGYRNVISSLLKLDDLESAEKIFEEWE-------SQALCY------ 187 (349)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~------------~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~------ 187 (349)
+..+++|...|.+......|+. .+.-.+..++...|+.+.|..+++..+ .-.+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 4456666666664333333222 233445556667777666555544432 211211
Q ss_pred -------CcchHHH---HHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 018924 188 -------DTRIPNF---LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR-QNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 188 -------~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 252 (349)
|...|-+ -+..+.+.|-+..|.++-+.+.+..+.-|+.....+|..|+ ++.++.=.+++++....
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1222222 23345567888888888888887665556666677777664 45667666666666543
No 487
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.43 E-value=1.5e+02 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=10.7
Q ss_pred HHHhccCCHHHHHHHHHHHHhcC
Q 018924 162 SSLLKLDDLESAEKIFEEWESQA 184 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~ 184 (349)
....++...++|+++++-|.+.|
T Consensus 69 D~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 69 DYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33334444445555555554444
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.16 E-value=2.2e+02 Score=21.91 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHhcCcHHHHHHHHHHHHH
Q 018924 197 DVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 197 ~~~~~~~~~~~a~~~~~~~~~ 217 (349)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345566666666666665554
No 489
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.93 E-value=1.5e+02 Score=20.07 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=9.5
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q 018924 125 VILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~ 144 (349)
.++..|...++.++|..-++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~ 26 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLK 26 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHH
Confidence 34444455555555555554
No 490
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.89 E-value=60 Score=27.47 Aligned_cols=94 Identities=7% Similarity=-0.037 Sum_probs=65.9
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchh-hHHHHHHHHhcCCCHHH
Q 018924 164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK-SWYYLATGYRQNSQIHK 242 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~ 242 (349)
....|.++.|.+.|-..++.+ ++....|..-.+++.+.+++..|.+=++...+.+ ||.. .|-.--.+-...|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHH
Confidence 345688899999998887765 5566667667777888888888888888777743 4432 23333333445789999
Q ss_pred HHHHHHHHHHHhcccccCCCCHH
Q 018924 243 AVEAMKKVLAAYQTLVKWKPSVE 265 (349)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~p~~~ 265 (349)
|...|....+. ++.+...
T Consensus 201 aa~dl~~a~kl-----d~dE~~~ 218 (377)
T KOG1308|consen 201 AAHDLALACKL-----DYDEANS 218 (377)
T ss_pred HHHHHHHHHhc-----cccHHHH
Confidence 99999999876 6655443
No 491
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=33.86 E-value=1.4e+02 Score=25.49 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 63 (349)
|-.+.+.....|.+++++.+|++.+..|.+|-...-..++..+-..+.
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~k~~ 190 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKMKSQ 190 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh
No 492
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.80 E-value=2.6e+02 Score=22.79 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=17.3
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 121 SAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
.....+...|.+.|++.+|...|-
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH
Confidence 566777788888888888877664
No 493
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=32.51 E-value=4.9e+02 Score=25.49 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=8.2
Q ss_pred cHHHHHHHHHHHHh
Q 018924 12 TTVVYNSMLKLYYK 25 (349)
Q Consensus 12 ~~~~~~~li~~~~~ 25 (349)
+...+|.|++.+-+
T Consensus 132 T~~A~NALLKtLEE 145 (830)
T PRK07003 132 TNHAFNAMLKTLEE 145 (830)
T ss_pred CHHHHHHHHHHHHh
Confidence 44566777766543
No 494
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.87 E-value=2.6e+02 Score=22.22 Aligned_cols=97 Identities=9% Similarity=0.056 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc---cHHHH--HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc
Q 018924 44 ITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL---DWVIY--ATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118 (349)
Q Consensus 44 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 118 (349)
+.++..-+|.|+--|.-...+.+|-+.|.. ..++.| +...+ ..-|......|+++.|++...++...-+..+
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~---e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK---ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc---ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 445555566665555555555555555543 234433 33333 3456677888888888888888765444444
Q ss_pred chhhHHHHHH----HHhhcCCHHHHHHHHH
Q 018924 119 VNSAYNVILT----LYGKYGKKDDVLRIWE 144 (349)
Q Consensus 119 ~~~~~~~l~~----~~~~~~~~~~a~~~~~ 144 (349)
. ..+--|.. -..+.|..++|+++.+
T Consensus 99 ~-~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 99 R-ELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred h-hHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3 23322222 2356677777777777
No 495
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=31.54 E-value=2.1e+02 Score=28.55 Aligned_cols=59 Identities=10% Similarity=0.060 Sum_probs=47.2
Q ss_pred hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh
Q 018924 96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN 154 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~ 154 (349)
....+.+++.+|..|...|+.......|-.....+.+.+.+.+|..+|+ -......|-.
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~ 149 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLE 149 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 5667889999999999988888886778888888889999999999998 4444444543
No 496
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.88 E-value=2.9e+02 Score=22.45 Aligned_cols=92 Identities=11% Similarity=-0.075 Sum_probs=51.0
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHh------hcCCcch----------hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQ------IKGAKVN----------SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN 154 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (349)
.+-+.+.|++.+|..-|.+..-. .-.|..+ ..+.....++...|++-++++.........+.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34567788888888777665321 0122220 1223333445556666666666554444445555
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWES 182 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 182 (349)
..|..-..+.+..-+..+|..-|...++
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 5566666666666666666666666655
No 497
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.64 E-value=5.3e+02 Score=25.00 Aligned_cols=121 Identities=16% Similarity=0.178 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
....+...|..+.-.|++++|-...-.|... +..-|...+..++..++... +..-+. ......+...|..++
T Consensus 391 i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~---Ia~~lP-t~~~rL~p~vYemvL 462 (846)
T KOG2066|consen 391 IKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD---IAPYLP-TGPPRLKPLVYEMVL 462 (846)
T ss_pred hHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch---hhccCC-CCCcccCchHHHHHH
Confidence 4566888999999999999999988888765 55666666666666666543 233333 222234455565555
Q ss_pred HHHhhcCcHHHHHHHHHH------------------HHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 92 NGYGKVGLLDKALAMLKK------------------SEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
..+.. .+...-.+...+ ..+ . ..+. ..-..|+..|...+++..|..++-
T Consensus 463 ve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q-~-Se~~-~L~e~La~LYl~d~~Y~~Al~~yl 529 (846)
T KOG2066|consen 463 VEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ-N-SEST-ALLEVLAHLYLYDNKYEKALPIYL 529 (846)
T ss_pred HHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh-h-ccch-hHHHHHHHHHHHccChHHHHHHHH
Confidence 55554 222111111111 011 0 1111 244557778888888888887765
No 498
>COG0819 TenA Putative transcription activator [Transcription]
Probab=29.52 E-value=2.9e+02 Score=21.91 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=13.4
Q ss_pred hhCCCccHHHHHHHHHHHHhcCChhH
Q 018924 6 DLGLARTTVVYNSMLKLYYKTGNFEK 31 (349)
Q Consensus 6 ~~g~~p~~~~~~~li~~~~~~g~~~~ 31 (349)
+....|...+|+.-|...+..|++.+
T Consensus 102 ~~~~~~~~~aYt~ym~~~~~~g~~~~ 127 (218)
T COG0819 102 KTEPSPANKAYTRYLLDTAYSGSFAE 127 (218)
T ss_pred hcCCCchHHHHHHHHHHHHhcCCHHH
Confidence 33444555555555555555555444
No 499
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.51 E-value=1.6e+02 Score=23.57 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=30.5
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 294 (349)
.+.++.+.+.+++.+++ ...| ....|-.+-..--+.|+++.|-+.+++..+.+
T Consensus 6 ~~~~D~~aaaely~qal-------~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQAL-------ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHh-------hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 34566666666666666 3344 34555555555566666666666666555443
No 500
>PRK10292 hypothetical protein; Provisional
Probab=29.44 E-value=1.3e+02 Score=18.22 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=19.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 018924 35 LMHEMEENGITYDRYTYCTRLSAYADASDHE 65 (349)
Q Consensus 35 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 65 (349)
+.-.|...|.+|.......+++.-...+..+
T Consensus 21 vVl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~ 51 (69)
T PRK10292 21 VVLEMRDLGQEPKHIVIAGVLRTALANKRIQ 51 (69)
T ss_pred HHHHHHHcCCCcchhhHHHHHHHHHHhcccc
Confidence 4445777787887777777776555555443
Done!