Query 018924
Match_columns 349
No_of_seqs 542 out of 1463
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 08:10:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.2E-34 4.1E-39 253.4 22.3 199 2-202 14-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.9E-34 1E-38 250.9 23.3 185 86-276 28-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.4E-30 4.9E-35 235.6 30.8 315 8-331 195-584 (597)
4 2xpi_A Anaphase-promoting comp 100.0 6.2E-29 2.1E-33 224.9 33.8 287 10-308 302-595 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-26 4.3E-31 198.7 32.1 308 10-332 64-374 (388)
6 2y4t_A DNAJ homolog subfamily 100.0 1.8E-25 6.2E-30 195.2 31.6 308 10-333 23-365 (450)
7 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-24 4E-29 186.4 35.4 304 12-331 32-339 (388)
8 3ieg_A DNAJ homolog subfamily 99.9 1.4E-22 4.9E-27 171.2 33.7 319 12-346 2-355 (359)
9 2y4t_A DNAJ homolog subfamily 99.9 8.5E-22 2.9E-26 171.9 35.2 282 10-305 57-370 (450)
10 3hym_B Cell division cycle pro 99.9 1E-21 3.6E-26 164.1 31.3 292 8-311 17-319 (330)
11 2gw1_A Mitochondrial precursor 99.9 1.6E-21 5.4E-26 173.0 31.4 271 11-292 37-400 (514)
12 2gw1_A Mitochondrial precursor 99.9 7.2E-21 2.5E-25 168.8 28.6 299 12-324 5-401 (514)
13 3fp2_A TPR repeat-containing p 99.9 7.1E-20 2.4E-24 163.4 34.2 308 11-324 57-491 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 6.2E-19 2.1E-23 148.8 36.8 282 11-305 35-347 (359)
15 3hym_B Cell division cycle pro 99.9 3E-20 1E-24 155.1 28.4 281 44-332 18-305 (330)
16 4eqf_A PEX5-related protein; a 99.9 1.2E-20 4.1E-25 160.1 24.7 268 14-288 66-351 (365)
17 1fch_A Peroxisomal targeting s 99.9 6.6E-20 2.3E-24 155.6 27.7 256 27-293 39-314 (368)
18 1fch_A Peroxisomal targeting s 99.9 2.1E-20 7.1E-25 158.7 23.9 269 13-288 64-354 (368)
19 3cv0_A Peroxisome targeting si 99.9 1.5E-19 5.2E-24 150.7 26.7 273 12-291 20-313 (327)
20 3mkr_A Coatomer subunit epsilo 99.9 5.7E-19 1.9E-23 144.6 27.1 259 20-300 6-271 (291)
21 4eqf_A PEX5-related protein; a 99.9 1.3E-19 4.3E-24 153.8 23.8 260 47-318 64-350 (365)
22 3fp2_A TPR repeat-containing p 99.9 7.3E-19 2.5E-23 156.8 28.7 299 12-324 24-407 (537)
23 3cv0_A Peroxisome targeting si 99.8 6.6E-19 2.3E-23 146.8 23.9 261 47-320 20-311 (327)
24 3spa_A Mtrpol, DNA-directed RN 99.8 2.1E-20 7E-25 169.2 11.9 151 12-168 126-286 (1134)
25 3mkr_A Coatomer subunit epsilo 99.8 8.6E-18 2.9E-22 137.5 24.7 256 55-332 6-270 (291)
26 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-20 5.8E-25 169.8 9.0 119 154-277 127-249 (1134)
27 3uq3_A Heat shock protein STI1 99.8 8.7E-17 3E-21 129.2 25.6 227 12-253 4-236 (258)
28 1b89_A Protein (clathrin heavy 99.8 9.7E-19 3.3E-23 146.8 12.6 250 25-321 15-266 (449)
29 3uq3_A Heat shock protein STI1 99.8 9.8E-17 3.4E-21 128.9 23.8 227 48-294 5-237 (258)
30 2pl2_A Hypothetical conserved 99.8 1.1E-16 3.8E-21 125.2 22.1 197 47-250 4-211 (217)
31 1b89_A Protein (clathrin heavy 99.8 5E-19 1.7E-23 148.6 7.4 260 11-316 30-303 (449)
32 2pl2_A Hypothetical conserved 99.8 1.5E-16 5.2E-21 124.5 20.5 201 10-217 2-213 (217)
33 3u4t_A TPR repeat-containing p 99.8 5.2E-16 1.8E-20 125.8 23.8 197 15-216 5-206 (272)
34 4g1t_A Interferon-induced prot 99.8 1.1E-14 3.9E-19 127.6 33.3 316 10-333 48-469 (472)
35 3u4t_A TPR repeat-containing p 99.7 1.4E-15 4.9E-20 123.2 25.2 250 48-305 3-262 (272)
36 2ho1_A Type 4 fimbrial biogene 99.7 2E-15 6.7E-20 121.0 25.3 201 13-217 37-237 (252)
37 2vq2_A PILW, putative fimbrial 99.7 5.4E-15 1.8E-19 116.1 26.9 208 83-298 7-216 (225)
38 2vq2_A PILW, putative fimbrial 99.7 2.5E-15 8.5E-20 118.0 24.8 205 12-219 7-212 (225)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.3E-16 1.5E-20 126.5 20.9 247 25-287 17-269 (275)
40 2ho1_A Type 4 fimbrial biogene 99.7 2.7E-15 9.3E-20 120.1 24.6 204 85-297 38-242 (252)
41 2h6f_A Protein farnesyltransfe 99.7 1.7E-15 5.9E-20 128.1 24.1 244 49-305 98-360 (382)
42 2q7f_A YRRB protein; TPR, prot 99.7 7.9E-16 2.7E-20 122.5 20.4 205 88-302 27-231 (243)
43 4a1s_A PINS, partner of inscut 99.7 7.3E-16 2.5E-20 132.7 21.2 280 13-293 48-372 (411)
44 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.3E-15 2.1E-19 119.5 25.3 243 60-318 17-269 (275)
45 3ro2_A PINS homolog, G-protein 99.7 1.7E-15 5.8E-20 126.3 22.3 281 12-293 4-332 (338)
46 2h6f_A Protein farnesyltransfe 99.7 4.7E-15 1.6E-19 125.4 24.9 249 12-275 96-364 (382)
47 3sf4_A G-protein-signaling mod 99.7 4.4E-15 1.5E-19 127.4 25.2 301 10-311 6-361 (406)
48 2ooe_A Cleavage stimulation fa 99.7 6.4E-14 2.2E-18 124.7 32.1 300 12-325 12-455 (530)
49 1ouv_A Conserved hypothetical 99.7 1E-13 3.5E-18 112.4 30.7 223 12-253 5-251 (273)
50 2q7f_A YRRB protein; TPR, prot 99.7 1.2E-15 4.2E-20 121.4 19.0 202 12-219 22-223 (243)
51 1ouv_A Conserved hypothetical 99.7 4.6E-14 1.6E-18 114.5 28.2 228 47-298 5-256 (273)
52 2xm6_A Protein corresponding t 99.7 6.4E-13 2.2E-17 117.1 36.8 16 202-217 272-287 (490)
53 2xm6_A Protein corresponding t 99.7 8.6E-13 2.9E-17 116.3 37.0 284 12-324 38-360 (490)
54 2ond_A Cleavage stimulation fa 99.7 2.7E-13 9.2E-18 112.0 28.0 237 12-253 7-270 (308)
55 4a1s_A PINS, partner of inscut 99.7 6.6E-15 2.3E-19 126.7 19.0 274 49-323 49-371 (411)
56 2ooe_A Cleavage stimulation fa 99.7 5.5E-13 1.9E-17 118.7 31.8 211 102-324 256-492 (530)
57 3nf1_A KLC 1, kinesin light ch 99.7 2.2E-15 7.4E-20 124.5 14.9 242 11-253 25-307 (311)
58 3vtx_A MAMA; tetratricopeptide 99.7 5.3E-14 1.8E-18 107.0 21.5 166 83-252 4-169 (184)
59 3sf4_A G-protein-signaling mod 99.7 2.2E-14 7.7E-19 123.0 21.2 278 45-323 6-335 (406)
60 3ro2_A PINS homolog, G-protein 99.6 1.6E-14 5.4E-19 120.4 17.9 275 49-324 6-332 (338)
61 3ulq_A Response regulator aspa 99.6 1E-13 3.5E-18 118.2 22.7 296 23-323 22-367 (383)
62 2ond_A Cleavage stimulation fa 99.6 7.3E-13 2.5E-17 109.4 26.4 221 65-296 33-273 (308)
63 3nf1_A KLC 1, kinesin light ch 99.6 1.1E-14 3.7E-19 120.3 15.0 239 47-293 26-307 (311)
64 4abn_A Tetratricopeptide repea 99.6 1.6E-13 5.6E-18 120.1 21.7 213 64-289 84-317 (474)
65 3vtx_A MAMA; tetratricopeptide 99.6 3E-13 1E-17 102.7 20.6 166 12-182 4-169 (184)
66 4g1t_A Interferon-induced prot 99.6 1.2E-12 4.1E-17 114.7 26.6 205 47-253 50-276 (472)
67 1xi4_A Clathrin heavy chain; a 99.6 2.9E-12 9.8E-17 120.5 28.8 267 19-324 1055-1342(1630)
68 4abn_A Tetratricopeptide repea 99.6 8.7E-14 3E-18 121.8 17.7 208 99-318 83-315 (474)
69 1hz4_A MALT regulatory protein 99.6 1E-11 3.5E-16 105.4 29.6 278 15-293 16-322 (373)
70 3ulq_A Response regulator aspa 99.6 2.4E-12 8.3E-17 109.7 24.7 231 54-292 109-367 (383)
71 3q15_A PSP28, response regulat 99.6 3.2E-12 1.1E-16 108.7 25.1 312 8-323 5-364 (378)
72 1xi4_A Clathrin heavy chain; a 99.5 9.2E-12 3.1E-16 117.2 26.5 261 12-315 1104-1375(1630)
73 4gyw_A UDP-N-acetylglucosamine 99.5 2.1E-12 7.2E-17 117.7 20.4 166 83-252 8-173 (723)
74 3as5_A MAMA; tetratricopeptide 99.5 7.4E-12 2.5E-16 94.7 20.4 163 50-217 10-172 (186)
75 4gyw_A UDP-N-acetylglucosamine 99.5 2.7E-12 9.2E-17 117.0 20.6 166 47-217 8-173 (723)
76 3edt_B KLC 2, kinesin light ch 99.5 2.6E-12 8.9E-17 104.2 18.3 228 24-252 12-280 (283)
77 3as5_A MAMA; tetratricopeptide 99.5 5.5E-12 1.9E-16 95.5 18.8 166 84-253 8-173 (186)
78 3edt_B KLC 2, kinesin light ch 99.5 3.4E-12 1.2E-16 103.6 18.6 233 60-293 13-281 (283)
79 3q15_A PSP28, response regulat 99.5 2.3E-11 7.7E-16 103.5 22.7 233 19-253 107-365 (378)
80 4i17_A Hypothetical protein; T 99.5 1.5E-11 5.2E-16 96.7 20.0 128 122-251 9-144 (228)
81 4i17_A Hypothetical protein; T 99.5 1.9E-11 6.4E-16 96.2 20.2 198 11-220 5-211 (228)
82 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.9E-15 98.3 26.8 266 52-323 18-321 (373)
83 3e4b_A ALGK; tetratricopeptide 99.4 1.3E-11 4.4E-16 107.4 20.5 278 19-325 9-352 (452)
84 1qqe_A Vesicular transport pro 99.4 6.3E-11 2.1E-15 96.9 20.2 206 29-251 33-267 (292)
85 3e4b_A ALGK; tetratricopeptide 99.4 2.2E-10 7.6E-15 99.6 24.3 154 86-252 178-350 (452)
86 1qqe_A Vesicular transport pro 99.4 3.5E-11 1.2E-15 98.4 17.7 235 30-293 2-269 (292)
87 3mv2_B Coatomer subunit epsilo 99.3 1.1E-09 3.9E-14 88.3 23.2 254 20-299 20-288 (310)
88 3urz_A Uncharacterized protein 99.3 2.6E-10 9E-15 88.2 18.0 167 90-268 10-194 (208)
89 3qky_A Outer membrane assembly 99.3 3.5E-10 1.2E-14 90.8 18.9 188 12-219 14-225 (261)
90 3qky_A Outer membrane assembly 99.3 3.5E-10 1.2E-14 90.8 18.6 187 47-253 14-224 (261)
91 3mv2_B Coatomer subunit epsilo 99.3 9.1E-10 3.1E-14 88.8 20.4 248 55-332 20-288 (310)
92 2fo7_A Synthetic consensus TPR 99.3 5.6E-10 1.9E-14 79.4 17.3 59 192-251 72-130 (136)
93 2fo7_A Synthetic consensus TPR 99.3 6E-10 2.1E-14 79.2 16.9 129 87-218 4-132 (136)
94 3urz_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 87.6 15.6 96 13-112 4-116 (208)
95 2yhc_A BAMD, UPF0169 lipoprote 99.2 5.6E-09 1.9E-13 81.8 21.1 209 48-299 4-219 (225)
96 2pzi_A Probable serine/threoni 99.2 9.1E-10 3.1E-14 100.7 18.8 176 59-239 402-583 (681)
97 2pzi_A Probable serine/threoni 99.2 8.9E-10 3.1E-14 100.8 18.5 173 95-279 402-583 (681)
98 4ga2_A E3 SUMO-protein ligase 99.2 1.3E-10 4.4E-15 84.9 10.3 56 195-251 37-92 (150)
99 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.5E-08 5.1E-13 79.3 21.7 188 12-220 3-215 (225)
100 4ga2_A E3 SUMO-protein ligase 99.2 3.2E-10 1.1E-14 82.8 11.1 143 92-238 5-148 (150)
101 2vsy_A XCC0866; transferase, g 99.2 1.7E-09 5.8E-14 97.1 17.5 153 97-253 2-157 (568)
102 4e6h_A MRNA 3'-END-processing 99.1 1.6E-07 5.4E-12 85.0 29.5 213 104-324 329-570 (679)
103 2vsy_A XCC0866; transferase, g 99.1 3.3E-09 1.1E-13 95.2 18.7 154 26-184 2-158 (568)
104 2r5s_A Uncharacterized protein 99.1 8.6E-10 2.9E-14 82.9 12.5 160 89-252 11-172 (176)
105 3qou_A Protein YBBN; thioredox 99.1 2.4E-09 8.2E-14 87.2 16.0 164 84-251 117-282 (287)
106 2r5s_A Uncharacterized protein 99.1 1.5E-09 5E-14 81.6 13.6 161 121-291 7-171 (176)
107 2ifu_A Gamma-SNAP; membrane fu 99.1 5.3E-09 1.8E-13 86.1 18.1 232 25-286 3-254 (307)
108 3qou_A Protein YBBN; thioredox 99.1 2.7E-09 9.1E-14 86.9 15.9 169 45-217 114-283 (287)
109 3dra_A Protein farnesyltransfe 99.1 1.4E-07 4.7E-12 76.8 25.6 230 65-303 50-298 (306)
110 2ifu_A Gamma-SNAP; membrane fu 99.1 9.7E-09 3.3E-13 84.5 19.0 188 55-245 43-253 (307)
111 3u3w_A Transcriptional activat 99.1 1.6E-07 5.6E-12 76.6 25.9 168 125-292 80-265 (293)
112 3dra_A Protein farnesyltransfe 99.1 1.1E-07 3.7E-12 77.4 24.3 223 24-252 43-286 (306)
113 3rjv_A Putative SEL1 repeat pr 99.1 6E-08 2E-12 75.1 21.2 174 31-219 4-198 (212)
114 4e6h_A MRNA 3'-END-processing 99.1 1E-07 3.5E-12 86.2 24.5 250 14-274 303-584 (679)
115 3u3w_A Transcriptional activat 99.0 9.2E-08 3.2E-12 78.1 21.3 164 90-253 81-266 (293)
116 2c2l_A CHIP, carboxy terminus 99.0 9.4E-09 3.2E-13 83.4 14.6 195 11-217 2-198 (281)
117 2qfc_A PLCR protein; TPR, HTH, 99.0 2.1E-07 7.2E-12 75.9 22.6 171 121-292 76-265 (293)
118 3gw4_A Uncharacterized protein 99.0 1E-08 3.5E-13 78.6 13.4 156 95-252 3-175 (203)
119 3rjv_A Putative SEL1 repeat pr 99.0 5.6E-08 1.9E-12 75.2 17.6 166 11-185 16-199 (212)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 8.9E-08 3E-12 74.0 18.4 87 51-144 9-95 (213)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1E-07 3.5E-12 73.6 18.2 126 13-144 6-145 (213)
122 4gco_A Protein STI-1; structur 99.0 3E-08 1E-12 69.8 13.7 95 122-217 15-109 (126)
123 4gco_A Protein STI-1; structur 98.9 4E-08 1.4E-12 69.1 13.7 110 13-127 13-122 (126)
124 2qfc_A PLCR protein; TPR, HTH, 98.9 3E-07 1E-11 75.0 20.0 170 48-217 75-265 (293)
125 1a17_A Serine/threonine protei 98.9 9.1E-08 3.1E-12 70.6 15.5 94 123-217 16-109 (166)
126 1a17_A Serine/threonine protei 98.9 1.2E-07 3.9E-12 70.0 16.0 130 85-217 14-145 (166)
127 3gyz_A Chaperone protein IPGC; 98.9 3.1E-08 1.1E-12 71.9 11.9 96 85-182 37-132 (151)
128 3gw4_A Uncharacterized protein 98.9 1E-07 3.4E-12 73.0 15.6 120 24-144 3-131 (203)
129 1na0_A Designed protein CTPR3; 98.9 1.1E-07 3.8E-12 66.2 14.5 115 13-132 9-123 (125)
130 2c2l_A CHIP, carboxy terminus 98.9 2.5E-08 8.6E-13 80.9 12.2 195 83-293 3-199 (281)
131 2lni_A Stress-induced-phosphop 98.9 1.1E-07 3.8E-12 67.2 14.3 120 10-134 13-132 (133)
132 1na0_A Designed protein CTPR3; 98.9 1.3E-07 4.5E-12 65.8 14.0 96 155-252 10-105 (125)
133 2vyi_A SGTA protein; chaperone 98.8 8.4E-08 2.9E-12 67.5 13.0 121 11-136 10-130 (131)
134 4f3v_A ESX-1 secretion system 98.8 2.5E-08 8.5E-13 79.4 10.8 198 96-305 18-248 (282)
135 3gyz_A Chaperone protein IPGC; 98.8 4.1E-08 1.4E-12 71.3 11.2 95 156-252 38-132 (151)
136 2uy1_A Cleavage stimulation fa 98.8 1.3E-05 4.4E-10 70.3 29.0 120 191-323 288-412 (493)
137 2e2e_A Formate-dependent nitri 98.8 2.2E-08 7.7E-13 75.0 10.0 118 97-217 23-143 (177)
138 2vyi_A SGTA protein; chaperone 98.8 1.2E-07 4.3E-12 66.6 13.4 96 85-182 13-108 (131)
139 2lni_A Stress-induced-phosphop 98.8 2.8E-07 9.7E-12 65.0 15.1 93 48-144 16-108 (133)
140 3q7a_A Farnesyltransferase alp 98.8 3.2E-06 1.1E-10 69.6 22.9 219 95-324 65-331 (349)
141 1p5q_A FKBP52, FK506-binding p 98.8 2.1E-07 7.3E-12 77.4 15.8 124 84-208 147-283 (336)
142 2fbn_A 70 kDa peptidylprolyl i 98.8 1.8E-08 6E-13 77.2 8.5 148 128-284 12-176 (198)
143 3q7a_A Farnesyltransferase alp 98.8 6.8E-06 2.3E-10 67.7 24.1 183 16-204 57-257 (349)
144 2e2e_A Formate-dependent nitri 98.8 6E-08 2E-12 72.7 11.0 123 58-184 20-145 (177)
145 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-07 4.9E-12 68.3 12.2 97 84-182 21-117 (148)
146 4f3v_A ESX-1 secretion system 98.8 5.7E-07 2E-11 71.6 16.1 195 25-230 18-247 (282)
147 1p5q_A FKBP52, FK506-binding p 98.8 3.5E-07 1.2E-11 76.1 15.5 153 97-253 126-294 (336)
148 2uy1_A Cleavage stimulation fa 98.7 1.6E-05 5.4E-10 69.7 26.6 101 9-112 11-117 (493)
149 2vgx_A Chaperone SYCD; alterna 98.7 1.4E-07 4.9E-12 68.3 11.5 93 157-251 24-116 (148)
150 3upv_A Heat shock protein STI1 98.7 5.3E-07 1.8E-11 63.2 13.9 100 12-114 3-102 (126)
151 3dss_A Geranylgeranyl transfer 98.7 3.4E-05 1.2E-09 63.2 26.2 233 60-305 41-316 (331)
152 4gcn_A Protein STI-1; structur 98.7 4.9E-07 1.7E-11 63.6 13.4 106 156-269 10-121 (127)
153 3upv_A Heat shock protein STI1 98.7 4.4E-07 1.5E-11 63.6 13.0 96 156-253 6-101 (126)
154 2kck_A TPR repeat; tetratricop 98.7 5.5E-07 1.9E-11 61.3 12.7 99 189-295 6-108 (112)
155 2xcb_A PCRH, regulatory protei 98.7 4.2E-07 1.4E-11 65.3 12.5 97 85-183 19-115 (142)
156 2fbn_A 70 kDa peptidylprolyl i 98.7 4.5E-08 1.5E-12 74.9 7.7 95 155-251 89-184 (198)
157 3sz7_A HSC70 cochaperone (SGT) 98.7 7.7E-07 2.6E-11 65.7 13.9 102 11-115 9-110 (164)
158 1elw_A TPR1-domain of HOP; HOP 98.7 1.7E-06 5.7E-11 59.4 14.7 96 85-182 5-100 (118)
159 4b4t_Q 26S proteasome regulato 98.7 1.2E-05 4.2E-10 69.2 23.2 98 156-253 137-245 (434)
160 1elw_A TPR1-domain of HOP; HOP 98.7 1.1E-06 3.6E-11 60.4 13.4 99 192-298 7-106 (118)
161 2xcb_A PCRH, regulatory protei 98.7 9.1E-07 3.1E-11 63.5 13.3 98 13-113 18-115 (142)
162 2kck_A TPR repeat; tetratricop 98.6 4.6E-07 1.6E-11 61.7 10.8 99 12-113 5-106 (112)
163 3sz7_A HSC70 cochaperone (SGT) 98.6 1.2E-06 4.3E-11 64.5 13.7 96 156-253 13-108 (164)
164 3q49_B STIP1 homology and U bo 98.6 1.4E-06 4.8E-11 61.9 13.6 101 11-114 7-107 (137)
165 1elr_A TPR2A-domain of HOP; HO 98.6 9E-07 3.1E-11 62.1 12.4 110 156-273 6-121 (131)
166 4gcn_A Protein STI-1; structur 98.6 1.4E-06 4.9E-11 61.2 13.2 95 86-182 10-111 (127)
167 4b4t_Q 26S proteasome regulato 98.6 5.5E-06 1.9E-10 71.4 19.6 200 92-292 12-244 (434)
168 3ro3_A PINS homolog, G-protein 98.6 7.3E-07 2.5E-11 65.2 12.1 102 191-292 51-157 (164)
169 1elr_A TPR2A-domain of HOP; HO 98.6 1E-06 3.5E-11 61.8 11.8 96 85-182 5-107 (131)
170 3q49_B STIP1 homology and U bo 98.6 2E-06 6.9E-11 61.0 13.2 97 84-182 9-105 (137)
171 3dss_A Geranylgeranyl transfer 98.6 0.00014 4.9E-09 59.6 25.4 232 13-253 26-304 (331)
172 2dba_A Smooth muscle cell asso 98.6 7.2E-06 2.5E-10 58.8 16.0 90 50-144 30-123 (148)
173 2dba_A Smooth muscle cell asso 98.5 3.1E-06 1.1E-10 60.8 13.8 100 191-299 30-134 (148)
174 1hxi_A PEX5, peroxisome target 98.5 1.1E-06 3.7E-11 61.2 10.7 87 163-251 26-112 (121)
175 1hxi_A PEX5, peroxisome target 98.5 1.3E-06 4.4E-11 60.8 10.5 97 191-295 19-116 (121)
176 3ro3_A PINS homolog, G-protein 98.5 4.9E-06 1.7E-10 60.6 13.3 59 86-144 11-73 (164)
177 1wao_1 Serine/threonine protei 98.5 3.2E-07 1.1E-11 80.1 7.7 123 88-213 10-134 (477)
178 2xev_A YBGF; tetratricopeptide 98.5 1.2E-05 4E-10 56.3 14.6 94 159-253 7-105 (129)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 6.7E-06 2.3E-10 71.5 15.6 124 84-208 268-404 (457)
180 2xev_A YBGF; tetratricopeptide 98.4 9.6E-06 3.3E-10 56.8 13.7 101 192-300 5-112 (129)
181 2hr2_A Hypothetical protein; a 98.4 1.6E-05 5.5E-10 57.3 13.9 80 191-271 59-149 (159)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 4.8E-06 1.6E-10 72.4 13.3 88 85-174 318-405 (457)
183 3k9i_A BH0479 protein; putativ 98.4 1.3E-06 4.3E-11 60.4 7.5 86 26-113 3-90 (117)
184 3rkv_A Putative peptidylprolyl 98.4 6.1E-06 2.1E-10 60.6 11.5 62 190-252 64-125 (162)
185 1wao_1 Serine/threonine protei 98.4 2E-06 6.9E-11 75.1 10.2 126 51-180 9-136 (477)
186 3k9i_A BH0479 protein; putativ 98.4 1.1E-06 3.8E-11 60.7 6.9 85 167-252 3-89 (117)
187 1ihg_A Cyclophilin 40; ppiase 98.3 9.1E-06 3.1E-10 68.5 13.6 123 13-139 223-360 (370)
188 3rkv_A Putative peptidylprolyl 98.3 1.6E-05 5.5E-10 58.3 13.0 64 155-219 64-127 (162)
189 1ihg_A Cyclophilin 40; ppiase 98.3 1.4E-05 4.8E-10 67.3 13.5 137 85-243 224-360 (370)
190 2if4_A ATFKBP42; FKBP-like, al 98.3 5.4E-06 1.9E-10 69.0 10.0 148 85-253 180-328 (338)
191 2if4_A ATFKBP42; FKBP-like, al 98.2 7.4E-06 2.5E-10 68.2 9.5 143 156-324 181-328 (338)
192 1dce_A Protein (RAB geranylger 98.2 0.00017 5.7E-09 64.3 18.0 173 99-282 44-244 (567)
193 3n71_A Histone lysine methyltr 98.2 2.9E-05 1E-09 67.6 12.8 88 94-181 319-420 (490)
194 1dce_A Protein (RAB geranylger 98.1 0.00022 7.4E-09 63.6 18.5 169 134-311 43-240 (567)
195 3n71_A Histone lysine methyltr 98.1 3E-05 1E-09 67.5 12.6 131 163-293 318-464 (490)
196 2l6j_A TPR repeat-containing p 98.1 4.8E-06 1.7E-10 56.5 5.9 88 190-285 5-99 (111)
197 2hr2_A Hypothetical protein; a 98.1 8.9E-05 3.1E-09 53.4 12.5 58 87-144 14-81 (159)
198 2kat_A Uncharacterized protein 98.0 4.2E-05 1.4E-09 52.3 9.5 80 31-113 3-82 (115)
199 2l6j_A TPR repeat-containing p 98.0 8.7E-06 3E-10 55.2 5.3 95 11-107 2-101 (111)
200 2kat_A Uncharacterized protein 97.9 0.00011 3.7E-09 50.2 10.2 79 173-253 4-82 (115)
201 1klx_A Cysteine rich protein B 97.9 0.00027 9.3E-09 50.1 12.5 88 195-293 31-126 (138)
202 1klx_A Cysteine rich protein B 97.9 0.00044 1.5E-08 49.0 13.4 87 160-252 31-125 (138)
203 1na3_A Designed protein CTPR2; 97.9 0.00011 3.7E-09 47.5 9.3 80 223-309 8-89 (91)
204 1zu2_A Mitochondrial import re 97.9 2.8E-05 9.6E-10 55.9 6.5 99 166-273 14-133 (158)
205 3ma5_A Tetratricopeptide repea 97.9 0.00012 4.1E-09 48.6 9.3 64 188-252 6-69 (100)
206 1na3_A Designed protein CTPR2; 97.9 0.00022 7.4E-09 46.0 10.4 56 87-144 12-67 (91)
207 3ma5_A Tetratricopeptide repea 97.8 0.00022 7.5E-09 47.3 9.5 60 83-144 6-65 (100)
208 1zu2_A Mitochondrial import re 97.7 0.00018 6.2E-09 51.7 7.8 38 97-136 15-52 (158)
209 3ly7_A Transcriptional activat 97.5 0.0054 1.9E-07 50.6 14.7 48 82-131 192-244 (372)
210 3ly7_A Transcriptional activat 97.3 0.011 3.6E-07 49.0 15.0 62 188-251 276-337 (372)
211 3qww_A SET and MYND domain-con 97.3 0.0019 6.7E-08 55.2 10.6 62 155-216 341-409 (433)
212 2kc7_A BFR218_protein; tetratr 97.2 0.0014 4.6E-08 43.1 7.5 56 162-218 8-64 (99)
213 3qwp_A SET and MYND domain-con 97.2 0.0053 1.8E-07 52.6 12.5 90 55-144 294-395 (429)
214 3qww_A SET and MYND domain-con 97.2 0.0045 1.5E-07 53.0 11.9 84 61-144 311-406 (433)
215 2kc7_A BFR218_protein; tetratr 97.2 0.0015 5E-08 42.9 7.0 55 20-75 7-62 (99)
216 3qwp_A SET and MYND domain-con 97.1 0.0037 1.3E-07 53.6 10.8 95 18-112 292-399 (429)
217 3mkq_A Coatomer beta'-subunit; 97.1 0.061 2.1E-06 50.2 19.6 151 23-213 609-760 (814)
218 1pc2_A Mitochondria fission pr 97.0 0.0088 3E-07 42.5 10.1 80 172-252 16-99 (152)
219 2v5f_A Prolyl 4-hydroxylase su 96.9 0.012 4E-07 39.1 9.8 71 227-297 8-79 (104)
220 3u64_A Protein TP_0956; tetrat 96.9 0.12 4.1E-06 41.1 16.5 82 170-253 179-269 (301)
221 1pc2_A Mitochondria fission pr 96.8 0.024 8.2E-07 40.3 11.0 90 204-300 13-107 (152)
222 3bee_A Putative YFRE protein; 96.8 0.013 4.4E-07 38.0 8.9 45 206-251 26-70 (93)
223 3bee_A Putative YFRE protein; 96.7 0.058 2E-06 34.8 11.4 65 10-75 3-70 (93)
224 4ady_A RPN2, 26S proteasome re 96.6 0.21 7.2E-06 46.7 17.8 255 57-323 383-657 (963)
225 2v5f_A Prolyl 4-hydroxylase su 96.5 0.061 2.1E-06 35.5 10.6 21 90-110 11-31 (104)
226 1wy6_A Hypothetical protein ST 96.4 0.14 4.7E-06 35.3 12.9 68 223-296 90-157 (172)
227 4h7y_A Dual specificity protei 96.3 0.079 2.7E-06 37.3 10.4 103 12-117 12-127 (161)
228 4h7y_A Dual specificity protei 96.3 0.085 2.9E-06 37.1 10.4 63 237-305 73-135 (161)
229 3mkq_A Coatomer beta'-subunit; 96.2 0.11 3.8E-06 48.4 14.5 100 16-144 632-731 (814)
230 3mkq_B Coatomer subunit alpha; 96.1 0.26 9E-06 35.9 13.2 101 92-213 13-113 (177)
231 1wy6_A Hypothetical protein ST 96.0 0.21 7.3E-06 34.4 15.7 63 122-184 93-155 (172)
232 3mkq_B Coatomer subunit alpha; 95.9 0.32 1.1E-05 35.5 16.8 100 22-144 14-113 (177)
233 1nzn_A CGI-135 protein, fissio 95.6 0.26 8.8E-06 33.7 10.3 89 203-298 15-108 (126)
234 3lvg_A Clathrin heavy chain 1; 95.5 7.5E-07 2.6E-11 74.9 -20.4 241 13-288 54-315 (624)
235 1nzn_A CGI-135 protein, fissio 95.3 0.36 1.2E-05 33.0 10.2 93 23-119 11-107 (126)
236 3u64_A Protein TP_0956; tetrat 95.1 0.99 3.4E-05 35.9 17.6 89 154-250 199-295 (301)
237 3lvg_A Clathrin heavy chain 1; 95.0 5.4E-05 1.8E-09 64.0 -11.1 211 85-320 55-287 (624)
238 4b4t_P 26S proteasome regulato 95.0 1.6 5.4E-05 37.5 21.2 259 26-289 29-320 (445)
239 4gns_B Protein CSD3, chitin bi 94.9 0.28 9.6E-06 44.9 11.4 125 158-291 252-398 (754)
240 4gns_B Protein CSD3, chitin bi 94.9 0.38 1.3E-05 44.1 12.2 127 88-216 252-398 (754)
241 2ff4_A Probable regulatory pro 94.9 0.18 6.2E-06 42.5 9.7 74 193-267 175-248 (388)
242 4ady_A RPN2, 26S proteasome re 94.8 2.8 9.4E-05 39.5 17.9 261 23-292 384-657 (963)
243 1v54_E Cytochrome C oxidase po 94.5 0.5 1.7E-05 30.5 8.5 62 239-305 25-86 (109)
244 4fhn_B Nucleoporin NUP120; pro 94.3 1.3 4.3E-05 43.3 15.2 145 90-242 818-989 (1139)
245 3lpz_A GET4 (YOR164C homolog); 94.1 2 6.8E-05 35.0 18.7 19 273-291 196-214 (336)
246 4b4t_P 26S proteasome regulato 93.6 3.2 0.00011 35.6 20.3 243 62-311 30-307 (445)
247 2wpv_A GET4, UPF0363 protein Y 93.0 3 0.0001 33.7 16.3 178 100-291 13-215 (312)
248 1v54_E Cytochrome C oxidase po 92.9 0.52 1.8E-05 30.5 6.5 46 207-252 28-73 (109)
249 4fhn_B Nucleoporin NUP120; pro 92.8 3 0.0001 40.7 14.9 145 53-206 817-988 (1139)
250 2y69_E Cytochrome C oxidase su 92.7 1.3 4.5E-05 30.4 8.6 62 239-305 68-129 (152)
251 2ff4_A Probable regulatory pro 92.6 0.64 2.2E-05 39.1 8.9 197 12-227 32-248 (388)
252 3ffl_A Anaphase-promoting comp 91.4 2.7 9.1E-05 30.2 9.5 26 268-293 126-151 (167)
253 3o48_A Mitochondria fission 1 91.2 2.6 8.9E-05 29.0 10.2 45 207-251 61-105 (134)
254 2y69_E Cytochrome C oxidase su 89.9 2.2 7.5E-05 29.3 7.5 60 207-272 71-130 (152)
255 2p58_C Putative type III secre 89.2 3.1 0.00011 26.8 8.3 81 205-298 23-103 (116)
256 2uwj_G Type III export protein 89.1 2.9 0.0001 26.9 7.2 53 233-296 48-100 (115)
257 4b4t_R RPN7, 26S proteasome re 89.0 6.2 0.00021 33.6 11.8 60 15-74 133-194 (429)
258 3o48_A Mitochondria fission 1 88.9 4.2 0.00014 27.9 10.7 76 219-299 35-113 (134)
259 1y8m_A FIS1; mitochondria, unk 87.3 5.7 0.0002 27.7 11.3 65 187-251 37-104 (144)
260 3eiq_C Programmed cell death p 86.6 9.4 0.00032 31.5 10.9 62 267-328 220-286 (358)
261 4b4t_R RPN7, 26S proteasome re 86.1 4.9 0.00017 34.3 9.5 98 156-253 133-237 (429)
262 1zbp_A Hypothetical protein VP 86.1 4.8 0.00017 31.5 8.4 57 162-219 5-61 (273)
263 3ffl_A Anaphase-promoting comp 85.9 7.8 0.00027 27.8 10.4 116 90-218 26-151 (167)
264 1zbp_A Hypothetical protein VP 84.9 4.3 0.00015 31.8 7.6 73 197-273 5-77 (273)
265 1wdy_A 2-5A-dependent ribonucl 84.7 4.1 0.00014 31.9 8.1 16 316-331 267-282 (285)
266 1y8m_A FIS1; mitochondria, unk 83.1 9.6 0.00033 26.6 11.5 74 221-299 36-112 (144)
267 3esl_A Checkpoint serine/threo 82.6 13 0.00044 27.7 10.0 56 97-152 92-148 (202)
268 1qsa_A Protein (soluble lytic 81.4 30 0.001 31.1 22.1 112 204-323 229-347 (618)
269 2zu6_B Programmed cell death p 81.4 14 0.00047 29.8 9.7 24 88-111 7-30 (307)
270 3eiq_C Programmed cell death p 80.8 14 0.00046 30.6 9.6 61 192-253 220-282 (358)
271 2wpv_A GET4, UPF0363 protein Y 80.1 22 0.00075 28.7 17.0 130 129-287 22-157 (312)
272 1wdy_A 2-5A-dependent ribonucl 79.3 11 0.00038 29.3 8.7 181 89-295 7-210 (285)
273 1mzb_A Ferric uptake regulatio 74.6 12 0.0004 25.8 6.6 59 4-63 9-68 (136)
274 3kea_A K1L; tropism, ANK repea 74.2 30 0.001 27.2 11.8 18 90-107 34-51 (285)
275 3esl_A Checkpoint serine/threo 74.0 25 0.00085 26.2 9.8 80 210-295 58-146 (202)
276 2d2s_A Exocyst complex compone 74.0 28 0.00095 26.7 9.8 91 18-112 23-119 (235)
277 2fu4_A Ferric uptake regulatio 73.2 12 0.00042 22.9 5.9 34 29-62 33-66 (83)
278 3txn_A 26S proteasome regulato 72.5 42 0.0014 28.1 26.0 163 51-215 22-207 (394)
279 3jxi_A Vanilloid receptor-rela 71.8 5.3 0.00018 30.9 4.9 55 20-74 9-72 (260)
280 2nsz_A Programmed cell death p 71.6 8 0.00027 26.4 5.1 67 226-298 9-77 (129)
281 4a1g_A Mitotic checkpoint seri 71.4 24 0.00082 24.9 9.1 51 173-223 84-135 (152)
282 3eyy_A Putative iron uptake re 70.7 13 0.00046 25.9 6.2 34 29-62 33-66 (145)
283 2fe3_A Peroxide operon regulat 70.6 14 0.00049 25.7 6.4 61 38-100 12-72 (145)
284 1n11_A Ankyrin; clathrin, BAND 69.9 17 0.00059 30.7 8.0 115 19-144 17-134 (437)
285 2xig_A Ferric uptake regulatio 68.8 14 0.00047 26.0 6.0 61 38-100 17-77 (150)
286 4a1g_A Mitotic checkpoint seri 68.3 29 0.00098 24.5 9.0 50 103-152 84-134 (152)
287 2ion_A PDCD4, programmed cell 67.9 10 0.00035 26.8 5.1 67 226-298 11-79 (152)
288 3lpz_A GET4 (YOR164C homolog); 67.8 49 0.0017 27.0 17.1 159 97-278 9-181 (336)
289 1k1a_A B-cell lymphoma 3-encod 67.0 28 0.00097 26.1 8.1 22 91-112 13-34 (241)
290 2w57_A Ferric uptake regulatio 66.2 16 0.00056 25.6 5.9 59 4-63 8-67 (150)
291 3ljn_A Hypothetical protein; a 65.5 53 0.0018 26.8 9.9 90 90-186 23-113 (364)
292 3kea_A K1L; tropism, ANK repea 64.2 46 0.0016 26.1 9.0 14 164-177 168-181 (285)
293 2wvi_A Mitotic checkpoint seri 62.5 40 0.0014 24.1 8.9 50 103-152 79-129 (164)
294 3eu9_A Huntingtin-interacting 62.4 20 0.00069 26.9 6.4 48 22-73 15-64 (240)
295 4ets_A Ferric uptake regulatio 62.3 20 0.00067 25.6 5.8 71 29-101 13-86 (162)
296 3txn_A 26S proteasome regulato 61.4 72 0.0025 26.7 26.3 168 14-181 20-208 (394)
297 1k1a_A B-cell lymphoma 3-encod 61.2 20 0.0007 27.0 6.3 54 19-72 12-67 (241)
298 4aez_C MAD3, mitotic spindle c 60.6 34 0.0012 25.9 6.9 50 138-187 132-183 (223)
299 1qsa_A Protein (soluble lytic 60.2 97 0.0033 27.8 25.2 226 99-335 229-490 (618)
300 2fe3_A Peroxide operon regulat 58.5 42 0.0014 23.3 6.9 61 215-281 13-73 (145)
301 2wvi_A Mitotic checkpoint seri 58.4 48 0.0016 23.7 8.8 47 243-294 79-126 (164)
302 2ion_A PDCD4, programmed cell 58.2 42 0.0014 23.6 6.8 23 17-39 13-35 (152)
303 2uwj_G Type III export protein 57.8 35 0.0012 22.0 7.3 79 27-114 20-98 (115)
304 3jxi_A Vanilloid receptor-rela 57.7 16 0.00056 28.0 5.2 54 91-144 9-70 (260)
305 2p58_C Putative type III secre 56.8 37 0.0013 22.0 7.8 78 27-113 21-98 (116)
306 3aji_A 26S proteasome non-ATPa 55.5 35 0.0012 25.4 6.7 19 91-109 10-28 (231)
307 3aji_A 26S proteasome non-ATPa 54.8 23 0.00078 26.5 5.5 19 55-73 10-28 (231)
308 2nsz_A Programmed cell death p 54.8 47 0.0016 22.5 7.7 23 17-39 11-33 (129)
309 3hra_A Ankyrin repeat family p 54.2 32 0.0011 25.0 6.1 13 210-222 159-171 (201)
310 4aez_C MAD3, mitotic spindle c 53.6 47 0.0016 25.2 6.6 51 172-222 132-183 (223)
311 2etb_A Transient receptor pote 53.4 36 0.0012 26.0 6.5 25 91-115 6-30 (256)
312 2o03_A Probable zinc uptake re 52.8 34 0.0012 23.2 5.5 47 18-64 15-61 (131)
313 3eu9_A Huntingtin-interacting 52.4 12 0.0004 28.2 3.5 48 57-107 15-62 (240)
314 3b7b_A Euchromatic histone-lys 51.9 21 0.00074 26.8 4.9 207 19-252 14-235 (237)
315 2b7e_A PRE-mRNA processing pro 50.9 18 0.00063 20.6 3.1 29 101-130 3-31 (59)
316 3hra_A Ankyrin repeat family p 50.8 21 0.00073 25.9 4.6 182 21-209 10-195 (201)
317 3mwm_A ZUR, putative metal upt 49.0 31 0.0011 23.8 4.8 60 4-64 5-64 (139)
318 4gq2_M Nucleoporin NUP120; bet 48.4 1.2E+02 0.0041 29.0 10.2 48 191-238 899-950 (950)
319 4ets_A Ferric uptake regulatio 47.3 58 0.002 23.2 6.1 49 230-281 38-86 (162)
320 1mzb_A Ferric uptake regulatio 47.1 40 0.0014 23.1 5.2 63 214-282 8-71 (136)
321 2d2s_A Exocyst complex compone 46.5 96 0.0033 23.7 9.8 19 126-144 24-42 (235)
322 2w57_A Ferric uptake regulatio 45.3 43 0.0015 23.4 5.2 63 214-282 7-70 (150)
323 2zu6_B Programmed cell death p 45.1 1.2E+02 0.0041 24.4 12.5 61 192-253 169-231 (307)
324 2pnn_A Transient receptor pote 44.9 38 0.0013 26.2 5.4 55 19-73 16-79 (273)
325 2xig_A Ferric uptake regulatio 44.7 77 0.0026 22.1 7.4 64 213-282 16-79 (150)
326 3ygs_P Procaspase 9; apoptosis 44.6 48 0.0016 21.1 4.9 38 203-244 51-88 (97)
327 4gq2_M Nucleoporin NUP120; bet 44.5 2.1E+02 0.0072 27.3 11.1 51 160-215 816-866 (950)
328 3f3f_C Nucleoporin NUP85; stru 43.1 1.1E+02 0.0038 27.0 8.1 74 62-139 495-568 (570)
329 1ug3_A EIF4GI, eukaryotic prot 43.0 1.3E+02 0.0046 24.4 8.8 25 157-181 14-38 (339)
330 2yru_A Steroid receptor RNA ac 41.9 37 0.0013 22.7 4.0 42 34-75 47-88 (118)
331 2yru_A Steroid receptor RNA ac 41.0 59 0.002 21.7 4.9 43 69-112 47-89 (118)
332 1n11_A Ankyrin; clathrin, BAND 40.9 61 0.0021 27.2 6.5 98 4-108 33-134 (437)
333 2rfa_A Transient receptor pote 40.2 93 0.0032 23.0 6.9 85 198-293 127-223 (232)
334 3eyy_A Putative iron uptake re 40.1 77 0.0026 21.9 5.8 45 39-86 10-54 (145)
335 2f6m_A Suppressor protein STP2 39.9 53 0.0018 19.2 3.9 47 15-62 4-50 (65)
336 2o03_A Probable zinc uptake re 38.1 48 0.0016 22.5 4.4 48 230-282 16-63 (131)
337 1bd8_A P19INK4D CDK4/6 inhibit 36.5 47 0.0016 22.8 4.4 14 95-108 10-23 (156)
338 3kae_A CDC27, possible protein 35.2 1.3E+02 0.0044 21.9 10.2 80 24-110 44-140 (242)
339 2etb_A Transient receptor pote 33.9 1.5E+02 0.005 22.4 7.2 55 19-74 5-69 (256)
340 3mwm_A ZUR, putative metal upt 33.3 69 0.0024 22.0 4.6 62 215-282 5-66 (139)
341 1bd8_A P19INK4D CDK4/6 inhibit 33.3 46 0.0016 22.8 3.9 17 57-73 8-24 (156)
342 2rfa_A Transient receptor pote 33.1 1.5E+02 0.005 21.9 8.0 18 56-73 42-59 (232)
343 1ug3_A EIF4GI, eukaryotic prot 32.7 2E+02 0.0068 23.4 9.5 25 16-40 14-38 (339)
344 4g8k_A 2-5A-dependent ribonucl 32.4 1.9E+02 0.0065 23.0 8.3 35 200-241 281-315 (337)
345 2rg8_A Programmed cell death p 31.9 48 0.0016 23.7 3.6 26 226-251 12-37 (165)
346 3b7b_A Euchromatic histone-lys 31.2 25 0.00087 26.4 2.3 12 312-323 224-235 (237)
347 3f3f_C Nucleoporin NUP85; stru 30.7 1.1E+02 0.0036 27.2 6.1 71 136-208 497-568 (570)
348 3lxu_X Tripeptidyl-peptidase 2 30.7 4E+02 0.014 26.7 10.4 66 206-278 1266-1331(1354)
349 2crb_A Nuclear receptor bindin 30.4 1.1E+02 0.0036 19.4 5.7 41 226-266 17-57 (97)
350 3utm_A Tankyrase-1; tankyrase, 30.2 2E+02 0.007 22.7 9.1 120 89-224 26-152 (351)
351 3ljn_A Hypothetical protein; a 30.0 1E+02 0.0035 25.0 6.0 90 46-144 16-105 (364)
352 3bqo_A Telomeric repeat-bindin 29.9 1.7E+02 0.0058 21.7 10.1 48 64-112 94-145 (211)
353 2dzn_A Probable 26S proteasome 29.7 39 0.0013 25.0 3.2 17 92-108 7-23 (228)
354 3kae_A CDC27, possible protein 29.5 1.6E+02 0.0056 21.4 8.4 27 226-252 116-142 (242)
355 2keb_A DNA polymerase subunit 29.1 1.2E+02 0.004 19.5 6.3 29 209-237 29-57 (101)
356 2ijq_A Hypothetical protein; s 29.0 1.6E+02 0.0054 21.0 7.8 16 97-112 88-103 (161)
357 4fke_A Aminopeptidase N; zinc 28.7 3.9E+02 0.013 25.4 17.3 45 96-144 738-782 (909)
358 2ko4_A Mediator of RNA polymer 28.0 42 0.0015 20.4 2.3 33 8-40 31-63 (81)
359 2pnn_A Transient receptor pote 27.1 1.1E+02 0.0037 23.5 5.4 17 273-289 239-255 (273)
360 3m0z_A Putative aldolase; MCSG 26.9 64 0.0022 24.5 3.5 82 64-146 147-244 (249)
361 2fv2_A RCD1 required for cell 26.5 1.8E+02 0.006 22.7 6.0 58 230-291 179-236 (268)
362 2fu4_A Ferric uptake regulatio 26.5 1.1E+02 0.0037 18.3 6.3 33 241-278 34-66 (83)
363 2ijq_A Hypothetical protein; s 26.4 1.8E+02 0.006 20.7 8.9 48 96-144 44-99 (161)
364 2xai_A ASB-9, ankyrin repeat a 25.7 2.2E+02 0.0075 21.6 8.1 48 20-72 7-57 (261)
365 2p22_A Suppressor protein STP2 25.4 78 0.0027 22.9 3.7 48 12-60 110-157 (174)
366 3twr_A Tankyrase-2; ankyrin re 24.8 1.7E+02 0.0058 20.0 6.3 8 133-140 18-25 (165)
367 2r9g_A AAA ATPase, central reg 24.2 2.2E+02 0.0076 21.1 9.3 38 24-62 25-62 (204)
368 3d9h_A CDNA FLJ77766, highly s 24.2 2.5E+02 0.0085 21.7 9.4 15 57-71 98-112 (285)
369 2dzn_A Probable 26S proteasome 23.9 1.2E+02 0.004 22.3 4.9 52 20-72 6-57 (228)
370 4b4t_O 26S proteasome regulato 23.8 3.2E+02 0.011 22.8 9.0 56 161-216 83-154 (393)
371 1bpo_A Protein (clathrin); cla 23.7 3.5E+02 0.012 23.3 9.6 16 127-142 368-383 (494)
372 2qfz_A TBC1 domain family memb 23.3 1.3E+02 0.0045 24.5 5.3 77 34-111 230-313 (345)
373 3t5v_B Nuclear mRNA export pro 23.2 1.4E+02 0.0047 25.6 5.5 61 192-252 179-248 (455)
374 2dod_A Transcription elongatio 23.0 1.4E+02 0.0048 18.4 4.1 34 100-134 16-49 (82)
375 4b4t_S RPN3, 26S proteasome re 22.6 3.9E+02 0.013 23.4 12.4 172 48-220 231-431 (523)
376 1ixm_A SPO0B, protein (sporula 22.6 1.9E+02 0.0065 21.2 5.5 72 204-291 14-85 (192)
377 2qq8_A TBC1 domain family memb 22.3 2.6E+02 0.0087 22.6 6.8 42 212-253 216-257 (334)
378 3qil_A Clathrin heavy chain 1; 22.2 56 0.0019 22.0 2.2 51 16-69 35-85 (125)
379 3no6_A Transcriptional activat 21.9 2.7E+02 0.0094 21.3 7.0 23 11-33 127-150 (248)
380 3bge_A Predicted ATPase; struc 21.5 2.5E+02 0.0086 20.8 8.7 42 19-60 10-54 (201)
381 1uzc_A Hypothetical protein FL 21.0 1.3E+02 0.0046 17.8 3.6 34 99-133 13-46 (71)
382 2cwy_A Hypothetical protein TT 20.4 1.7E+02 0.0059 18.4 4.3 33 25-57 13-45 (94)
383 1oyz_A Hypothetical protein YI 20.3 2.9E+02 0.01 21.1 19.8 57 262-323 204-262 (280)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-34 Score=253.35 Aligned_cols=199 Identities=12% Similarity=0.120 Sum_probs=166.9
Q ss_pred hhhhhhCCCccH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHH
Q 018924 2 QKMRDLGLARTT-VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD---------HEGIDKIL 71 (349)
Q Consensus 2 ~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~ 71 (349)
.++++.++.+++ ..++.+|++|++.|++++|+++|++|.+.|++||..||+.||.+|++.+. +++|.++|
T Consensus 14 ~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf 93 (501)
T 4g26_A 14 RKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF 93 (501)
T ss_dssp ----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHH
Confidence 356666766544 45788899999999999999999999999999999999999999887654 67888999
Q ss_pred HHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhc
Q 018924 72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAV 150 (349)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~ 150 (349)
++|. ..|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+. .+|+++|.+|++.|++++|.++|+ |...|+
T Consensus 94 ~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 94 KQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-RSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-ceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9998 7788899999999999999999999999999999988888888 899999999999999999999998 888899
Q ss_pred cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202 (349)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 202 (349)
.||..||+++|.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988899999999888888764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.9e-34 Score=250.90 Aligned_cols=185 Identities=15% Similarity=0.092 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCC---------HHHHHHHHH-HHHhhccCChh
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK---------KDDVLRIWE-LYKKAVKVLNN 155 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~-~~~~~~~~~~~ 155 (349)
.++.+|++|++.|++++|.++|++|.+.|+.|+. .+||+||.+|++.+. .+.|.++|+ |...|+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3455555555555555555555555555555555 555555555554432 456666666 66666666766
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 235 (349)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 77777777777777777777777777666677777777777777777777777777777777777777777777777777
Q ss_pred cCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHh
Q 018924 236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD 276 (349)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 276 (349)
+.|++++|.++|++|.+. +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-----g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-----VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-----TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-----CCCcCHHHHHHHHHHHhc
Confidence 777777777777777666 667777777766666654
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-30 Score=235.63 Aligned_cols=315 Identities=10% Similarity=-0.024 Sum_probs=195.0
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---------------------------------
Q 018924 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTR--------------------------------- 54 (349)
Q Consensus 8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--------------------------------- 54 (349)
|.+++..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 55668999999999999999999999999999876422 22222211
Q ss_pred -----HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc--------------
Q 018924 55 -----LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-------------- 115 (349)
Q Consensus 55 -----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------------- 115 (349)
+..|.+.|++++|.++|+++. +. +++..+|+.++.+|.+.|++++|.++|+++.+.++
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSIN-GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTST-TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhh-cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH
Confidence 233344555566666665555 22 35555566666666666666666666665554322
Q ss_pred ------------------CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHH
Q 018924 116 ------------------GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177 (349)
Q Consensus 116 ------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 177 (349)
.|+...+|+.++..|.+.|++++|.++|+......+.+..+|+.++..|.+.|++++|.++|
T Consensus 351 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22222456666666666666666666666222233334556666666666666666666666
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 018924 178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL 257 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (349)
+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|.++|+++.+..+ .
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 507 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVK-K 507 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh-c
Confidence 6666543 345566666666666666666666666666654432 556666677777777777777777776665311 1
Q ss_pred ccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcc
Q 018924 258 VKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEE 331 (349)
Q Consensus 258 ~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~ 331 (349)
.+..|+ ..+|..+..+|.+.|++++|.++++++.+.++.+..+|..+. .|.+.| ++|.+.|+++.+. .|+..
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCh
Confidence 133555 566677777777777777777777776666666666666666 666666 6677777766653 45443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.2e-29 Score=224.87 Aligned_cols=287 Identities=14% Similarity=0.092 Sum_probs=256.3
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT 89 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (349)
+++..+|+.++..|.+.|++++|+.+|+++.+.+.. +..++..++.++.+.|++++|..+++++. +.. +.+..+|+.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLV-DRH-PEKAVTWLA 378 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTSHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhC-cccHHHHHH
Confidence 589999999999999999999999999999987643 77899999999999999999999999997 433 367889999
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD 169 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (349)
++.+|.+.|++++|.++|+++.+. .|+...+|+.++.+|.+.|++++|+++|+......+.+..+|..++.+|.+.|+
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC
Confidence 999999999999999999999874 445447999999999999999999999994445556688899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc----Ccccc--hhhHHHHHHHHhcCCCHHHH
Q 018924 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK----GREIH--VKSWYYLATGYRQNSQIHKA 243 (349)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a 243 (349)
+++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|
T Consensus 457 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 457 ILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999864 557889999999999999999999999999876 55677 78999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhh
Q 018924 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNV 308 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~ 308 (349)
.++|+++.+. + +.+..+|..+..+|.+.|++++|.+.|+++.+..|.+...|..+. .|.
T Consensus 536 ~~~~~~~~~~-----~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 536 IDALNQGLLL-----S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHH-----S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHh-----C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999975 3 337899999999999999999999999999999888888887777 654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.3e-26 Score=198.69 Aligned_cols=308 Identities=15% Similarity=0.106 Sum_probs=233.8
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT 89 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (349)
+.+..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.++++. +.+. .+...+..
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~ 140 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSAL-QYNP-DLYCVRSD 140 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HHCT-TCTHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHH
Confidence 4466777777777888888888888887777653 2244567777777777888888887777776 3222 33445666
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD 169 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (349)
+...+...|++++|.+.|+++.+. .|+...+|..+...+...|++++|...|+......+.+...|..+...+...|+
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 777777778888888888877764 344446778888888888888888888884333344455677777888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924 170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK 249 (349)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 249 (349)
+++|...+++..+.. +.+..++..+..+|.+.|++++|...|+++.+.++. +..+|..+...+.+.|++++|.+.|++
T Consensus 219 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777653 345677888888899999999999999998886543 566788888899999999999999999
Q ss_pred HHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCC
Q 018924 250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSL 326 (349)
Q Consensus 250 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~ 326 (349)
+.+. .+.+..++..+...+...|++++|...++++.+..|.+...+..+. .+.+.| ++|...|+++.+ +
T Consensus 297 al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~ 368 (388)
T 1w3b_A 297 ALRL------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--I 368 (388)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--T
T ss_pred HHhh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h
Confidence 8864 2446788888888999999999999999999888777788888888 888888 889999999876 4
Q ss_pred CCCccc
Q 018924 327 AGNEET 332 (349)
Q Consensus 327 ~p~~~t 332 (349)
.|+...
T Consensus 369 ~p~~~~ 374 (388)
T 1w3b_A 369 SPTFAD 374 (388)
T ss_dssp CTTCHH
T ss_pred CCCCHH
Confidence 676543
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.8e-25 Score=195.19 Aligned_cols=308 Identities=12% Similarity=0.018 Sum_probs=261.2
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT 89 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (349)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...++++. +.+. .+..++..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~ 99 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI-QLKM-DFTAARLQ 99 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CcHHHHHH
Confidence 3467889999999999999999999999999864 3478899999999999999999999999988 4443 56788899
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcch---hhHHHH------------HHHHhhcCCHHHHHHHHHHHHhhccCCh
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVN---SAYNVI------------LTLYGKYGKKDDVLRIWELYKKAVKVLN 154 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (349)
+..+|.+.|++++|.+.|+++.+. .|+.. .++..+ ...+...|++++|+..|+......+.+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999874 45543 455555 4458899999999999995455556677
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHH----
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL---- 230 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 230 (349)
..+..++.+|...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++....+. +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 889999999999999999999999998864 556788999999999999999999999999975432 34444444
Q ss_pred --------HHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924 231 --------ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-----VESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 231 --------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 297 (349)
...|...|++++|.++|+++++. .|+ ...+..+..++.+.|++++|...++.+....+.+
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 328 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT-------EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 78899999999999999999965 454 4578888999999999999999999999888888
Q ss_pred chhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccc
Q 018924 298 TDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETL 333 (349)
Q Consensus 298 ~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~ 333 (349)
...|..+. ++...| ++|...|++..+ +.|+....
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 365 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHH
Confidence 88999999 999999 899999999987 46766543
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.2e-24 Score=186.45 Aligned_cols=304 Identities=10% Similarity=0.035 Sum_probs=262.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...|+++. +... .+..+|..+.
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~ 108 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHAL-RLKP-DFIDGYINLA 108 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCc-chHHHHHHHH
Confidence 56677788888999999999999999988764 4477899999999999999999999999987 4332 4566789999
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
.++.+.|++++|.+.|+++.+. .|+...++..+...+...|++++|.+.|+......+.+..+|..+...+...|+++
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 109 AALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999875 45554688899999999999999999999444445556788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
+|...|+++.+.+ +.+...+..+...+...|++++|...|++.....+. +..++..+...|...|++++|.+.|+++.
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999864 445678889999999999999999999999886543 57789999999999999999999999999
Q ss_pred HHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCC
Q 018924 252 AAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLA 327 (349)
Q Consensus 252 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~ 327 (349)
+. .| +..++..+...+.+.|++++|...++++.+..+.+...|..+. .+.+.| ++|...++++.+. .
T Consensus 265 ~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 335 (388)
T 1w3b_A 265 EL-------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--F 335 (388)
T ss_dssp HT-------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--C
T ss_pred hh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 53 45 5778999999999999999999999999998888889999999 999999 8999999999764 5
Q ss_pred CCcc
Q 018924 328 GNEE 331 (349)
Q Consensus 328 p~~~ 331 (349)
|+..
T Consensus 336 p~~~ 339 (388)
T 1w3b_A 336 PEFA 339 (388)
T ss_dssp TTCH
T ss_pred CCcH
Confidence 6654
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=1.4e-22 Score=171.22 Aligned_cols=319 Identities=11% Similarity=0.009 Sum_probs=263.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
|+..|..+...+.+.|++++|+..|+++.+... .+..++..+..++...|++++|...++++. +... .+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVI-ALKM-DFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCC-CcchHHHHHH
Confidence 567888999999999999999999999998743 367799999999999999999999999987 4332 4568889999
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCC---cchhhHHHH------------HHHHhhcCCHHHHHHHHHHHHhhccCChhh
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGA---KVNSAYNVI------------LTLYGKYGKKDDVLRIWELYKKAVKVLNNG 156 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 156 (349)
.++...|++++|...|++..+. .| +....+..+ ...+...|++++|...++......+.+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 9999999999999999999874 44 333555555 588899999999999999555556667788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHH--------
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY-------- 228 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------- 228 (349)
+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+..+. +...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 9999999999999999999999999864 556788999999999999999999999999886533 233332
Q ss_pred ----HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-H----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924 229 ----YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-V----ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299 (349)
Q Consensus 229 ----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (349)
.+...+...|++++|...++++.+. .|+ . ..+..+..++...|++++|...++.+.+..+.+..
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKT-------EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence 2366789999999999999999975 343 2 23555778899999999999999999998888888
Q ss_pred hHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCCChhHHHHH
Q 018924 300 LQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEE 346 (349)
Q Consensus 300 ~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~ 346 (349)
.|..+. .+.+.| ++|...|++..+. .|+.......+..+...+++
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHH
Confidence 999999 999999 8999999999874 68877665555555555543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=8.5e-22 Score=171.93 Aligned_cols=282 Identities=12% Similarity=0.035 Sum_probs=236.8
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH---HH
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW---VI 86 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 86 (349)
+.+..+|..+...+.+.|++++|+..|+++.+.+. .+..++..+..++.+.|++++|...|+++. +.+. .+. ..
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~ 133 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVL-KSNP-SENEEKEA 133 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCC-CHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-CChhhHHH
Confidence 34788999999999999999999999999998753 367799999999999999999999999998 5433 333 55
Q ss_pred HHHH------------HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh
Q 018924 87 YATV------------GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN 154 (349)
Q Consensus 87 ~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (349)
+..+ ...+.+.|++++|...|+++.+. .|+...++..++.+|...|++++|...|+......+.+.
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 211 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 5555 44589999999999999999875 444447899999999999999999999995445556677
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHH------------HHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL------------IDVYCRNGLLEKAENLVNHEKLKGREI 222 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 222 (349)
.++..++..+...|++++|...++++.+.. +.+...+..+ ...+...|++++|...|+++.+..+.
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~- 289 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS- 289 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 899999999999999999999999998753 3344445444 78899999999999999999985432
Q ss_pred c----hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924 223 H----VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 223 ~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 297 (349)
+ ...|..+...+.+.|++++|++.++++.+. .| +...+..+..+|...|++++|...++.+.+..|.+
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 2 347888999999999999999999999864 45 68899999999999999999999999999987777
Q ss_pred chhHHHHh
Q 018924 298 TDLQDKLL 305 (349)
Q Consensus 298 ~~~~~~l~ 305 (349)
...+..+.
T Consensus 363 ~~~~~~l~ 370 (450)
T 2y4t_A 363 QQIREGLE 370 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666655
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1e-21 Score=164.06 Aligned_cols=292 Identities=15% Similarity=0.033 Sum_probs=244.9
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY 87 (349)
Q Consensus 8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 87 (349)
+.+.+...+..+...+...|++++|+++|+++.+... .+...+..++.++...|++++|..+++++. +... .+...+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~ 93 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLV-DLYP-SNPVSW 93 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TSTHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHH-HhCc-CCHHHH
Confidence 3455677788899999999999999999999988743 355677778889999999999999999987 4333 456778
Q ss_pred HHHHHHHhhcC-cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924 88 ATVGNGYGKVG-LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK 166 (349)
Q Consensus 88 ~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (349)
..+...+...| ++++|.+.|++..+. .|+...+|..+...+...|++++|...++......+.+...+..+...+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 88999999999 999999999999875 344447899999999999999999999995445455566778889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc--------ccchhhHHHHHHHHhcCC
Q 018924 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR--------EIHVKSWYYLATGYRQNS 238 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~~ 238 (349)
.|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+... ..+..++..+...+...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999998864 55678889999999999999999999999886421 234568899999999999
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hh-hhcC
Q 018924 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DN-VQNG 311 (349)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~-~~~g 311 (349)
++++|.+.++++.+. . +.+...+..+...+...|++++|...++++.+..+.+...+..+. ++ ...|
T Consensus 251 ~~~~A~~~~~~a~~~-----~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 251 KYAEALDYHRQALVL-----I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp CHHHHHHHHHHHHHH-----S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHhh-----C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence 999999999999965 2 225678889999999999999999999999998888888888888 77 4455
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-21 Score=173.02 Aligned_cols=271 Identities=11% Similarity=-0.013 Sum_probs=151.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC----------
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV---------- 80 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------- 80 (349)
|+..+|..+..++.+.|++++|+..|+++.+.+. .+..+|..+..++...|++++|...|+++. ..+.
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLS-LNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCccchHHHHH
Confidence 7888888888888899999999999988887642 356688888888888888888888888775 2221
Q ss_pred --------------------------------------------------------------------CccHHHHHHHHH
Q 018924 81 --------------------------------------------------------------------ALDWVIYATVGN 92 (349)
Q Consensus 81 --------------------------------------------------------------------~~~~~~~~~li~ 92 (349)
+.+...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 001222222333
Q ss_pred HHhh---cCcHHHHHHHHHHHHHhh---c---------CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhH
Q 018924 93 GYGK---VGLLDKALAMLKKSEEQI---K---------GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY 157 (349)
Q Consensus 93 ~~~~---~g~~~~a~~~~~~~~~~~---~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (349)
.+.. .|++++|...|+++.+.. . .|....++..+...+...|++++|...++...... |+...+
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~ 273 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSY 273 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-ccHHHH
Confidence 3332 666777777776665510 0 12222456666666666666666666666222211 224455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 158 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...++++.+..+. +...+..+...+...
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHc
Confidence 555555555566555555555555432 233444555555555555555555555555543322 333444455555555
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
|++++|.++++++.+. .+.+...+..+...+...|++++|...++.+..
T Consensus 352 ~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRK------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp TCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555442 122333444444444444444444444444443
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.2e-21 Score=168.78 Aligned_cols=299 Identities=7% Similarity=-0.069 Sum_probs=249.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
....|..+...+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|...++++. +.+. .+..+|..+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL-ELKP-DYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCS-CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh-ccCh-HHHHHHHHHH
Confidence 45678888999999999999999999999875 789999999999999999999999999988 4443 5678899999
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCC------------------------------------------------------
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGA------------------------------------------------------ 117 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~------------------------------------------------------ 117 (349)
.++.+.|++++|...|+++....+..
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999987654311
Q ss_pred -----------------------cchhhHHHHHHHHhh---cCCHHHHHHHHH-HHHh----h--c-------cCChhhH
Q 018924 118 -----------------------KVNSAYNVILTLYGK---YGKKDDVLRIWE-LYKK----A--V-------KVLNNGY 157 (349)
Q Consensus 118 -----------------------~~~~~~~~l~~~~~~---~~~~~~a~~~~~-~~~~----~--~-------~~~~~~~ 157 (349)
+....+......+.. .|++++|...|+ .... . . +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 111233334444443 899999999999 3331 1 1 3345678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 158 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
..+...+...|++++|...++.+.+.. |+...+..+...|...|++++|...++++.+..+. +...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHh
Confidence 889999999999999999999998865 33778889999999999999999999999886543 677889999999999
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cc
Q 018924 238 SQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KS 313 (349)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~ 313 (349)
|++++|...++++.+. .| +...+..+...+...|++++|...++.+....+.+...|..+. .+.+.| ++
T Consensus 318 ~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKEL-------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp TCTTHHHHHHHHHHHT-------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHh-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999864 34 5678888999999999999999999999988887888899999 999988 89
Q ss_pred hHHHHHHHHhC
Q 018924 314 NLETLRELYGN 324 (349)
Q Consensus 314 a~~~~~~m~~~ 324 (349)
|...++++.+.
T Consensus 391 A~~~~~~a~~~ 401 (514)
T 2gw1_A 391 ALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=7.1e-20 Score=163.37 Aligned_cols=308 Identities=13% Similarity=0.054 Sum_probs=236.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC------------
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP------------ 78 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------ 78 (349)
.+..+|..+..++.+.|++++|++.|+++.+.+. .+..++..+..++...|++++|...|+.+....
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 135 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 4678888888999999999999999999887653 366788888888888888888877664331000
Q ss_pred --------------------------------------------------------------------------------
Q 018924 79 -------------------------------------------------------------------------------- 78 (349)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (349)
T Consensus 136 ~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 215 (537)
T 3fp2_A 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215 (537)
T ss_dssp HHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHH
Confidence
Q ss_pred --------------CCCcc--------HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924 79 --------------NVALD--------WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK 136 (349)
Q Consensus 79 --------------~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (349)
...|+ ..++..+...+...|++++|.+.|++..+. .|+. .+|..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTP-NSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-HHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCc-hHHHHHHHHHHHhcCH
Confidence 00111 123455666777788888898888888875 3444 7888888899999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924 137 DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216 (349)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 216 (349)
++|...++......+.+..++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999985445555667788888999999999999999999988764 4456788889999999999999999999988
Q ss_pred HcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhc----------CChhhHHHH
Q 018924 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE----------GDIGGAENF 286 (349)
Q Consensus 217 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----------g~~~~a~~~ 286 (349)
+..+. +...+..+...+...|++++|.+.|+++.+..+...........+......+... |++++|...
T Consensus 372 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 86543 5668888899999999999999999998876322222222333345555667777 999999999
Q ss_pred HHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924 287 IELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN 324 (349)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~ 324 (349)
++.+.+..+.+...|..+. .+.+.| ++|.+.|++..+.
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999988888888888888 999888 8999999998774
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=6.2e-19 Score=148.83 Aligned_cols=282 Identities=11% Similarity=0.009 Sum_probs=232.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC--ccHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA--LDWVIYA 88 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 88 (349)
.+..+|..+...+...|++++|...|+++.+... .+...+..+..++...|++++|...+++.. +.... .+...+.
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVL-KSNPSEQEEKEAES 112 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TSCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCcccChHHHHH
Confidence 3678899999999999999999999999998742 266789999999999999999999999998 43220 2344444
Q ss_pred HH------------HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhh
Q 018924 89 TV------------GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG 156 (349)
Q Consensus 89 ~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 156 (349)
.+ ...+...|++++|.+.++++.+. .|+...++..+...+...|++++|...++......+.+..+
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 190 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 44 58899999999999999999885 34444789999999999999999999999555556667788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHH------------HHHHHHHhcCcHHHHHHHHHHHHHcCcccch
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN------------FLIDVYCRNGLLEKAENLVNHEKLKGREIHV 224 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 224 (349)
+..+...+...|++++|...++...+.. +.+...+. .+...+.+.|++++|...++++.+..+. +.
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 268 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VA 268 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ch
Confidence 9999999999999999999999998754 33333333 2366788999999999999999986533 22
Q ss_pred ----hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924 225 ----KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299 (349)
Q Consensus 225 ----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (349)
..+..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...++.+.+..|.+..
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 23556778999999999999999999964 45 6788999999999999999999999999998887777
Q ss_pred hHHHHh
Q 018924 300 LQDKLL 305 (349)
Q Consensus 300 ~~~~l~ 305 (349)
.+..+.
T Consensus 342 ~~~~l~ 347 (359)
T 3ieg_A 342 IREGLE 347 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766665
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=3e-20 Score=155.14 Aligned_cols=281 Identities=8% Similarity=-0.069 Sum_probs=233.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhH
Q 018924 44 ITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123 (349)
Q Consensus 44 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (349)
.+.+...+..+...+...|++++|.++++++. +... .+...+..++.++...|++++|...++++.+. .|+...+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 93 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVM-EKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSW 93 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHH
Confidence 44567788888999999999999999999987 4333 44456667888899999999999999999885 44444789
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924 124 NVILTLYGKYG-KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202 (349)
Q Consensus 124 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 202 (349)
..+...+...| ++++|...|+......+.+...|..+...+...|++++|...++++.+.. +.+...+..+...|...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 99999999999 99999999995555555567789999999999999999999999998864 44567788899999999
Q ss_pred CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHHHhcCC
Q 018924 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK---WKPSVESLAACLDYFKDEGD 279 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~g~ 279 (349)
|++++|...+++..+..+. +...+..+...+...|++++|...++++.+....... ...+...+..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999986543 6788999999999999999999999999875221111 13346788999999999999
Q ss_pred hhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCccc
Q 018924 280 IGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEET 332 (349)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t 332 (349)
+++|...++.+.+..+.+...|..+. .+.+.| ++|.+.+++..+ +.|+...
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 305 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTF 305 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchH
Confidence 99999999999998888888999999 999988 899999998876 4566544
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=1.2e-20 Score=160.12 Aligned_cols=268 Identities=11% Similarity=-0.102 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG 93 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 93 (349)
..|..+...+.+.|++++|+..|+++.+... .+..+|..+..++...|++++|...|++.. .... .+..++..+..+
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCL-ELQP-NNLKALMALAVS 142 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHH
Confidence 3355555556666666666666666655432 244555556666666666666666666554 2221 334555556666
Q ss_pred HhhcCcHHHHHHHHHHHHHhhcCCcchhhH----------HHHHHHHhhcCCHHHHHHHHHHHHhhccC--ChhhHHHHH
Q 018924 94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAY----------NVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVI 161 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li 161 (349)
|...|++++|...|+++.+..+ +....+ ..+...+...|++++|...++......+. +..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNP--KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCH--HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCc--cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 6666666666666666554322 111122 22355555555566666555522222222 344555555
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924 162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 241 (349)
..+...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+..+. +..+|..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 55555566666665555555542 334445555555555556666666555555554322 3445555555555555666
Q ss_pred HHHHHHHHHHHHhcccccC------CCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 242 KAVEAMKKVLAAYQTLVKW------KPSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
+|...|+++++..+...+. ..+...|..+..++...|+.+.+..+.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6665555555441111110 0013445555555555555555554443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=6.6e-20 Score=155.61 Aligned_cols=256 Identities=11% Similarity=0.015 Sum_probs=120.2
Q ss_pred CChhHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHH
Q 018924 27 GNFEKLDS-LMHEMEENGI---TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDK 102 (349)
Q Consensus 27 g~~~~a~~-~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 102 (349)
|++++|++ .|++...... ..+...+..+...+...|++++|...++++. +... .+..++..+..++...|++++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV-QQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH-HSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 45555555 5554433211 0122344455555555555555555555554 2222 344455555555555555555
Q ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHH---------------HHHHHhcc
Q 018924 103 ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN---------------VISSLLKL 167 (349)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~ 167 (349)
|.+.|+++.+. .|+...++..+...+...|++++|...++......+.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 55555555543 22222455555555555555555555555222222222211111 12222255
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924 168 DDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 246 (349)
|++++|...++++.+..... +..++..+...|...|++++|...|+++.+..+. +...|..+...+...|++++|.+.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555432111 2444555555555555555555555555543321 344555555555555555555555
Q ss_pred HHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
|+++++. .+.+...+..+..+|.+.|++++|...++.+...
T Consensus 274 ~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 274 YRRALEL------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555543 2344455555555555555555555555555443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=2.1e-20 Score=158.72 Aligned_cols=269 Identities=10% Similarity=-0.096 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++. +.+. .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~l~~ 140 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCL-ELKP-DNQTALMALAV 140 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-hcCC-CCHHHHHHHHH
Confidence 4567788888999999999999999998874 3366788888889999999999999998887 4333 46778888899
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHH---------------HHHHHhhcCCHHHHHHHHHHHHhhccC--Chh
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV---------------ILTLYGKYGKKDDVLRIWELYKKAVKV--LNN 155 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~ 155 (349)
++...|++++|.+.|+++....+... ..+.. .+..+...|++++|...|+......+. +..
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYA--HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTG--GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 99999999999999999887543332 33321 133344888999999999833333333 467
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 235 (349)
++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..+ .+...+..+...|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 88888889999999999999999888764 44567888888899999999999999998887653 25678888888999
Q ss_pred cCCCHHHHHHHHHHHHHHhcccccCC-----CCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 236 QNSQIHKAVEAMKKVLAAYQTLVKWK-----PSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
..|++++|...|+++.+..+...+.. ....+|..+..++...|+.++|..+++
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 99999999999999886522111110 015788888888889999998887764
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=1.5e-19 Score=150.69 Aligned_cols=273 Identities=10% Similarity=-0.103 Sum_probs=216.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
+...|..+...+...|++++|..+|+++.+... .+..++..+..++...|++++|...++++. +... .+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHAR-MLDP-KDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCc-CCHHHHHHHH
Confidence 455677888899999999999999999988743 367788899999999999999999999987 4333 5677888999
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH--------------HH-HHhhcCCHHHHHHHHHHHHhhccCChhh
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI--------------LT-LYGKYGKKDDVLRIWELYKKAVKVLNNG 156 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 156 (349)
..+...|++++|.+.++++.+.. |.....+..+ .. .+...|++++|...++......+.+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence 99999999999999999998753 3332345444 33 4778899999999999544555567788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 236 (349)
+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+...|..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 8999999999999999999999988764 445778888999999999999999999998886543 57788889999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCC------CHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924 237 NSQIHKAVEAMKKVLAAYQTLVKWKP------SVESLAACLDYFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 291 (349)
.|++++|.+.++++....+...+... +...+..+..++.+.|+.++|..+++...
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999875111101000 46788888999999999999998886443
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=5.7e-19 Score=144.56 Aligned_cols=259 Identities=13% Similarity=0.068 Sum_probs=210.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDR--YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV 97 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 97 (349)
|+.....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++ .. -+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~----~~-~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIK----PS-SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC----TT-SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhc----cc-CChhHHHHHHHHHHHcCC
Confidence 45567789999999998876543 3443 355667889999999999886543 22 347888899999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHH
Q 018924 98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177 (349)
Q Consensus 98 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 177 (349)
|+.++|++.++++...+..|+....+..+...+...|++++|++.++. +.+...+..++..+.+.|++++|.+.+
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999987655576657788888999999999999999984 567778999999999999999999999
Q ss_pred HHHHhcCCCCCcchH---HHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924 178 EEWESQALCYDTRIP---NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 254 (349)
+.+.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...|+.+..++.+.|++++|.+.|++++..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~- 229 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK- 229 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9998864 554222 2233444456999999999999998754 47888999999999999999999999999965
Q ss_pred cccccCCC-CHHHHHHHHHHHHhcCChhh-HHHHHHHHhhCCCCCchh
Q 018924 255 QTLVKWKP-SVESLAACLDYFKDEGDIGG-AENFIELLNDKGFIPTDL 300 (349)
Q Consensus 255 ~~~~~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~ 300 (349)
.| +..++..++..+...|+.++ +.++++++.+..|.++..
T Consensus 230 ------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 230 ------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 55 67889999999999999976 678999998887766543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=1.3e-19 Score=153.82 Aligned_cols=260 Identities=13% Similarity=0.003 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (349)
+...+..+...+.+.|++++|...|+++. .... .+..+|..+..+|.+.|++++|.+.|++..+. .|+...+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAI-LQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 34568889999999999999999999987 4333 56888999999999999999999999999885 45544799999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhh----------HHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCcchHHHH
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNG----------YRNVISSLLKLDDLESAEKIFEEWESQALC-YDTRIPNFL 195 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 195 (349)
..+|...|++++|...|+......+.+... +..+...+...|++++|...++++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999333222222222 334588899999999999999999986422 157789999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHH
Q 018924 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYF 274 (349)
Q Consensus 196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~ 274 (349)
...|...|++++|...|+++.+..+. +..+|..+...|...|++++|.+.|+++++. .| +..++..+..+|
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEI-------QPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCchHHHHHHHHHH
Confidence 99999999999999999999987543 6789999999999999999999999999964 55 478899999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCC------------CchhHHHHh-hhhhcC--cchHHHH
Q 018924 275 KDEGDIGGAENFIELLNDKGFI------------PTDLQDKLL-DNVQNG--KSNLETL 318 (349)
Q Consensus 275 ~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~-~~~~~g--~~a~~~~ 318 (349)
...|++++|...++++.+..+. +...|..+. ++...| +.+..+.
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999988775321 356788888 887777 4444443
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=7.3e-19 Score=156.81 Aligned_cols=299 Identities=11% Similarity=0.014 Sum_probs=237.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
....|..+...+.+.|++++|+..|+++.+... .+..+|..+..++.+.|++++|.+.+++.. +.+. .+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKAL-EIKP-DHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-chHHHHHHHH
Confidence 456788899999999999999999999998753 377899999999999999999999999987 4443 5678889999
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcch------------------------------------h--------------
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVN------------------------------------S-------------- 121 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------------------------~-------------- 121 (349)
.++...|++++|.+.|+.+.. .+..... .
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999999964421 1111100 0
Q ss_pred ----------------hHHHHHHHHhh--------cCCHHHHHHHHHHHHhhccCCh-------hhHHHHHHHHhccCCH
Q 018924 122 ----------------AYNVILTLYGK--------YGKKDDVLRIWELYKKAVKVLN-------NGYRNVISSLLKLDDL 170 (349)
Q Consensus 122 ----------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~ 170 (349)
....+...+.. .|++++|..+++......+.+. .++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 11112212111 2478888888884333333332 2466777888899999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250 (349)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 250 (349)
++|...++.+.+. .|+...+..+...+...|++++|...++++.+..+. +..+|..+...+...|++++|.+.++++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999985 455778888999999999999999999999986643 6778999999999999999999999999
Q ss_pred HHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924 251 LAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN 324 (349)
Q Consensus 251 ~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~ 324 (349)
.+. .| +...+..+...+...|++++|...++.+.+..+.+...+..+. .+.+.| ++|...|+++.+.
T Consensus 337 ~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 337 QSL-------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHH-------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 965 34 4678888999999999999999999999998888888899999 999989 8999999998764
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=6.6e-19 Score=146.78 Aligned_cols=261 Identities=7% Similarity=-0.052 Sum_probs=213.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (349)
+...+..+...+...|++++|..+++++. +... .+..++..+..++...|++++|.+.|+++.+. .|+...++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVC-QAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHH
Confidence 34466778888999999999999999987 4333 46788889999999999999999999999885 44444789999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHH--------------HH-HHhccCCHHHHHHHHHHHHhcCCCCCcch
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV--------------IS-SLLKLDDLESAEKIFEEWESQALCYDTRI 191 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (349)
...+...|++++|...++......+.+...+..+ .. .+...|++++|...++++.+.. +.+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 9999999999999999994444444444444444 33 3778899999999999998865 446788
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAAC 270 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l 270 (349)
+..+...|...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.+. .| +...+..+
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~l 246 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDI-------NPGYVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHHHHHHH
Confidence 999999999999999999999999986543 5778999999999999999999999999864 34 57888999
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCC------------CchhHHHHh-hhhhcC--cchHHHHHH
Q 018924 271 LDYFKDEGDIGGAENFIELLNDKGFI------------PTDLQDKLL-DNVQNG--KSNLETLRE 320 (349)
Q Consensus 271 l~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~-~~~~~g--~~a~~~~~~ 320 (349)
...+...|++++|...++.+....+. +...|..+. ++.+.| ++|..++++
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999998876554 566788888 888888 777777654
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=169.22 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=128.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEE---NGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA 88 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 88 (349)
-..+||+||++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|. +.|+.||..|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCcHHHHH
Confidence 356899999999999999999999988764 5899999999999999999999999999999999 889999999999
Q ss_pred HHHHHHhhcCcH-HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC------hhhHHHHH
Q 018924 89 TVGNGYGKVGLL-DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL------NNGYRNVI 161 (349)
Q Consensus 89 ~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~li 161 (349)
+||+++++.|+. ++|.++|++|.+.|+.|+. .+|+.++....+.+ +++..+....+..|+ ..+...+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~-vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQA-LFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH-HHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh-hhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 999999999985 7899999999999999999 99999987665543 333333234455544 45666777
Q ss_pred HHHhccC
Q 018924 162 SSLLKLD 168 (349)
Q Consensus 162 ~~~~~~~ 168 (349)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=8.6e-18 Score=137.53 Aligned_cols=256 Identities=10% Similarity=0.009 Sum_probs=203.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (349)
++.....|+++.|+...+... .....+.......+..+|...|+++.|...++.. ..|+. .++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~-~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~-~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK-PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPEL-QAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC-CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHH-HHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhH-HHHHHHHHHHcCCC
Confidence 344567899999999998876 3332222345566889999999999999877552 23344 78889999999999
Q ss_pred CHHHHHHHHH-HHHhhccC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHH
Q 018924 135 KKDDVLRIWE-LYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212 (349)
Q Consensus 135 ~~~~a~~~~~-~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 212 (349)
+.++|++.++ +...+..| +...+..+...+...|++++|.+.++. +.+...+..++..|.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999 55555444 455677778999999999999999987 456778899999999999999999999
Q ss_pred HHHHHcCcccchhhH---HHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018924 213 NHEKLKGREIHVKSW---YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL 289 (349)
Q Consensus 213 ~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 289 (349)
+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK------CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999865 443211 22334455679999999999999974 344788899999999999999999999999
Q ss_pred HhhCCCCCchhHHHHh-hhhhcC--c-chHHHHHHHHhCCCCCCccc
Q 018924 290 LNDKGFIPTDLQDKLL-DNVQNG--K-SNLETLRELYGNSLAGNEET 332 (349)
Q Consensus 290 ~~~~~~~~~~~~~~l~-~~~~~g--~-~a~~~~~~m~~~~~~p~~~t 332 (349)
+....|.+..++..++ .+...| . .+.++++++.+ +.|+...
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 9999998999999999 888888 3 46789998876 4677654
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=169.75 Aligned_cols=119 Identities=12% Similarity=0.023 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHH---hcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHH
Q 018924 154 NNGYRNVISSLLKLDDLESAEKIFEEWE---SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL 230 (349)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 230 (349)
..||+++|.+||+.|++++|.++|++|. +.|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3578888888888888888888887765 3567888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhc
Q 018924 231 ATGYRQNSQI-HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE 277 (349)
Q Consensus 231 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 277 (349)
|.++++.|+. ++|.++|++|.+. |+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-----G~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-----GLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-----TCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-----CCCCChhhcccccChhhHH
Confidence 8888888774 6778888888887 8888888888887655543
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.7e-17 Score=129.19 Aligned_cols=227 Identities=17% Similarity=0.086 Sum_probs=166.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC--Ccc----HH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV--ALD----WV 85 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~----~~ 85 (349)
....|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+++.. +... .++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAV-EQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccccchHHHHH
Confidence 35677888888888889999999888888876 677888888888888888888888888776 2111 111 46
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHh
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL 165 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (349)
++..+...+...|++++|...|++..+. .|+. ..+...|++++|...++......+.+...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA--------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH--------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh--------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 7778888888888888888888888764 2332 23555677788888887444444444566777777788
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHH
Q 018924 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE 245 (349)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 245 (349)
..|++++|...++++.+.. +.+..++..+...|...|++++|...+++..+..+. +...|..+...+...|++++|.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888888888888877654 445667777777788888888888888877775432 46667777777888888888888
Q ss_pred HHHHHHHH
Q 018924 246 AMKKVLAA 253 (349)
Q Consensus 246 ~~~~~~~~ 253 (349)
.++++.+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877754
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=9.7e-19 Score=146.85 Aligned_cols=250 Identities=10% Similarity=0.061 Sum_probs=105.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHH
Q 018924 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL 104 (349)
Q Consensus 25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 104 (349)
+.|++++|.+.++++. ++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 5677888888888872 3358888888888888888888888542 45567888888888888888888
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924 105 AMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184 (349)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 184 (349)
+.++..++. .++. .+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~-~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARES-YVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--Cccc-hhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 877766653 3344 678888888888888888887775 366678888888888888888888888865
Q ss_pred CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCH
Q 018924 185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264 (349)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~ 264 (349)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ .+.|+
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--------~~~ad- 208 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--------VVHAD- 208 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT--------TTCHH-
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH--------HhCHh-
Confidence 36888888888888888888888877 26778888888888888888885544432 23343
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHHHHHH
Q 018924 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLETLREL 321 (349)
Q Consensus 265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~~~~m 321 (349)
....++..|.+.|.+++|..+++............|.-+. +|++.. ++.++.++..
T Consensus 209 -~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 209 -ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456788888888888888888888877666667788888 888877 5555555433
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=9.8e-17 Score=128.88 Aligned_cols=227 Identities=12% Similarity=0.044 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc--c---hhh
Q 018924 48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK--V---NSA 122 (349)
Q Consensus 48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~---~~~ 122 (349)
...|..+...+...|++++|...+++.. +.. .+..++..+..++...|++++|.+.+++..+..+... . ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAW-ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 4567788888899999999999999887 444 6677888899999999999999999999887543321 0 267
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202 (349)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 202 (349)
|..+...+...|++++|...|+.... ..|+. ..+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLT-EHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh-cCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88899999999999999999983222 23442 34566788899999998888753 34556778888889999
Q ss_pred CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChh
Q 018924 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIG 281 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~ 281 (349)
|++++|...|++..+..+. +...|..+...|...|++++|...++++++. .| +...+..+..++...|+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-------DPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999998886543 6778888889999999999999999998864 34 4778888888899999999
Q ss_pred hHHHHHHHHhhCC
Q 018924 282 GAENFIELLNDKG 294 (349)
Q Consensus 282 ~a~~~~~~~~~~~ 294 (349)
+|...++.+.+..
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999998887764
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.1e-16 Score=125.24 Aligned_cols=197 Identities=13% Similarity=0.016 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (349)
+...+..+...+.+.|++++|...|++.. +.+. .+...+..+..++.+.|++++|+..|++..+. .|+...++..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERAL-KENP-QDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 34444445555555555555555555554 3222 33444445555555555555555555555442 23332455555
Q ss_pred HHHHhhc-----------CCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 018924 127 LTLYGKY-----------GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL 195 (349)
Q Consensus 127 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (349)
...+... |++++|+..|+......+.+...+..+..++...|++++|...|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 5555555 566666655553333333344455555556666666666666666655544 445555566
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924 196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250 (349)
Q Consensus 196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 250 (349)
..+|...|++++|...|++..+..+. +...+..+...+...|++++|++.|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666666654432 4455556666666666666666666554
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=5e-19 Score=148.56 Aligned_cols=260 Identities=11% Similarity=0.073 Sum_probs=126.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
++..+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++... + .. ++..+.+.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar-k-~~-~~~~i~~~L 100 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-K-KA-RESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-H-hC-ccchhHHHH
Confidence 44569999999999999999999999653 578899999999999999999999887766 4 33 567888899
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL 170 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 170 (349)
+.+|.+.|+++++.++++ .|+. .+|+.++..|...|.+++|...|... ..|..++.++.+.|++
T Consensus 101 i~~Y~Klg~l~e~e~f~~-------~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp --------CHHHHTTTTT-------CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCH
T ss_pred HHHHHHhCCHHHHHHHHc-------CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccH
Confidence 999999999999998885 2566 79999999999999999999999922 4799999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250 (349)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 250 (349)
++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|..+++..
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999988 267899999999999999999966655432 23334557899999999999999999999
Q ss_pred HHHhcccccCCC-CHHHHHHHHHHHHh--cCChhhHHHHHHHHhhC-CCC-------CchhHHHHh-hhhhcC--cchHH
Q 018924 251 LAAYQTLVKWKP-SVESLAACLDYFKD--EGDIGGAENFIELLNDK-GFI-------PTDLQDKLL-DNVQNG--KSNLE 316 (349)
Q Consensus 251 ~~~~~~~~~~~p-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~-~~~-------~~~~~~~l~-~~~~~g--~~a~~ 316 (349)
+ +..+ ....|+-+.-+|++ .++..+..+.|. .. +.| +...|..++ .|.+.+ +.|..
T Consensus 234 L-------~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 234 L-------GLERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp T-------TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred h-------CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 8 4444 56666666666654 344445554443 22 222 356788888 888888 55654
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.5e-16 Score=124.49 Aligned_cols=201 Identities=13% Similarity=0.027 Sum_probs=159.4
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT 89 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (349)
+++...|..+...+.+.|++++|+..|++..+... .+...+..+..++.+.|++++|...+++.. +.+. .+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLV-ARTP-RYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHH
Confidence 57888999999999999999999999999998743 367789999999999999999999999987 4343 46778888
Q ss_pred HHHHHhhc-----------CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHH
Q 018924 90 VGNGYGKV-----------GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR 158 (349)
Q Consensus 90 li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (349)
+..++... |++++|+..|++..+. .|+...+|..+..++...|++++|+..|+...... .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 99999999 9999999999999885 55555789999999999999999999999333333 7778899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
.+..++...|++++|...|+...+.. +.+...+..+...+...|++++|...|++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999998864 45677888899999999999999999987653
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=5.2e-16 Score=125.81 Aligned_cols=197 Identities=11% Similarity=0.022 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc--cHHHHHHHHH
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL--DWVIYATVGN 92 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~ 92 (349)
.+......+...|++++|+..|++..+.... +...+..+..++...|++++|...+++.. ..+..+ ...+|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHH
Confidence 3444555666666777777777666665322 34456666666666666666666666665 322111 1233555666
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 172 (349)
.+...|++++|.+.|++..+. .|+...+|..+...+...|++++|+..|+......+.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666553 222224555666666666666666665552222222233344444412222335555
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc---HHHHHHHHHHHH
Q 018924 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGL---LEKAENLVNHEK 216 (349)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 216 (349)
|.+.++++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555555544432 2223333334444444444 444444444443
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.1e-14 Score=127.64 Aligned_cols=316 Identities=12% Similarity=-0.047 Sum_probs=174.2
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhc---C-
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-----G--ITY-DRYTYCTRLSAYADASDHEGIDKILTMMEA---D- 77 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~- 77 (349)
+.....||.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++... .
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345678999999999999999999999987542 1 122 345899999999999999999998887641 0
Q ss_pred CC--CCccHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH---hhcCCHHHHHHHHHHHHhhc
Q 018924 78 PN--VALDWVIYATVGNGYGK--VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY---GKYGKKDDVLRIWELYKKAV 150 (349)
Q Consensus 78 ~~--~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~ 150 (349)
.+ ......++..+..++.+ .+++++|++.|++..+. .|+.+..+..+..++ ...++.++|++.++......
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11 11234566666655555 45789999999998874 444434555444443 23455555555555222222
Q ss_pred cCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-----
Q 018924 151 KVLNNGYRNVISSLLK----LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE----- 221 (349)
Q Consensus 151 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 221 (349)
+.+...+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 2233333333332222 234445555555544432 233344445555555555555555555444432211
Q ss_pred -----------------------------------------------cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924 222 -----------------------------------------------IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY 254 (349)
Q Consensus 222 -----------------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 254 (349)
.+...+..+...|...|++++|.+.|+++++.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~- 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK- 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 13345566777788889999999999998854
Q ss_pred cccccCCCCH--HHHHHHHH-HHHhcCChhhHHHHHHHHhhC------------------------CCCCchhHHHHh-h
Q 018924 255 QTLVKWKPSV--ESLAACLD-YFKDEGDIGGAENFIELLNDK------------------------GFIPTDLQDKLL-D 306 (349)
Q Consensus 255 ~~~~~~~p~~--~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~------------------------~~~~~~~~~~l~-~ 306 (349)
...|.. ..+..+.. .....|+.++|...+++.... .|.+..+|..+. .
T Consensus 364 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 364 ----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439 (472)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred ----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 322221 11222222 234678888888877766543 345567788888 8
Q ss_pred hhhcC--cchHHHHHHHHhCC-CCCCcccc
Q 018924 307 NVQNG--KSNLETLRELYGNS-LAGNEETL 333 (349)
Q Consensus 307 ~~~~g--~~a~~~~~~m~~~~-~~p~~~t~ 333 (349)
|...| ++|++.|++..+.| ..|+..++
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHCC----------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 88888 89999999887654 23444443
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=1.4e-15 Score=123.22 Aligned_cols=250 Identities=11% Similarity=0.014 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-hhhHHHH
Q 018924 48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSAYNVI 126 (349)
Q Consensus 48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 126 (349)
...+......+...|++++|+..+++.. +... .+...+..+..+|...|++++|.+.+++..+....++. ..+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLE-AKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHH-HTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 4456667788999999999999999987 4332 34457788999999999999999999999884322222 1348999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 206 (349)
...+...|++++|+..|+......+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999995555556667889999999999999999999999998763 445666777773444566999
Q ss_pred HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcccccCCCC------HHHHHHHHHHHHhc
Q 018924 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ---IHKAVEAMKKVLAAYQTLVKWKPS------VESLAACLDYFKDE 277 (349)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~------~~~~~~ll~~~~~~ 277 (349)
+|...|+++.+..+. +...+..+...+...|+ +++|...++++.+.. .-.|+ ...|..+...|...
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC----APGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH----GGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH----hcccccchHHHHHHHHHHHHHHHHc
Confidence 999999999986543 46677778888888888 888999999998762 22222 36788899999999
Q ss_pred CChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 278 GDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
|++++|...++.+.+..|.+...+..+.
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 9999999999999999887777766655
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=2e-15 Score=120.98 Aligned_cols=201 Identities=9% Similarity=-0.015 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++. +... .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKAL-ASDS-RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCc-CcHHHHHHHHH
Confidence 3445555555555555555555555555432 1234445555555555555555555555544 2221 23444455555
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 172 (349)
.+...|++++|.+.|+++.+.+..|....++..+...+...|++++|...++......+.+...+..+...+...|++++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555544112232224445555555555555555555552222223334444455555555555555
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
|...++.+.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555544432 22333444444455555555555555555544
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=5.4e-15 Score=116.07 Aligned_cols=208 Identities=13% Similarity=-0.042 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS 162 (349)
Q Consensus 83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 162 (349)
+...+..+...+...|++++|.+.|+++.+. .|+...++..+...+...|++++|...++......+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3445556666666666666666666666553 23322466666666666666666666666333333344555666666
Q ss_pred HHhcc-CCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCH
Q 018924 163 SLLKL-DDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240 (349)
Q Consensus 163 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 240 (349)
.+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 66666 66666666666666521122 2345556666666667777777776666654432 355666666666677777
Q ss_pred HHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 298 (349)
++|.+.++++.+. ....+...+..+...+...|+.+.+..+++.+....+.+.
T Consensus 164 ~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 164 GDADYYFKKYQSR-----VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 7777777766653 2113445555555666666777777776666665544433
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=2.5e-15 Score=118.01 Aligned_cols=205 Identities=8% Similarity=-0.010 Sum_probs=150.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
+...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...+++.. .... .+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQAL-SIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHH-HhCC-CChHHHHHHH
Confidence 56778888888888888888888888887764 2356678888888888888888888888876 3332 4566777788
Q ss_pred HHHhhc-CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924 92 NGYGKV-GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL 170 (349)
Q Consensus 92 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 170 (349)
..+... |++++|...++++.+.+..|....++..+...+...|++++|...++......+.+...+..+...+...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 888888 8888888888888763223443367777888888888888888888843334444566777777888888888
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924 171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219 (349)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (349)
++|...++.+.+.....+...+..+...+...|+.+.|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 8888888877765421455566667777777888888888887776543
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=4.3e-16 Score=126.45 Aligned_cols=247 Identities=9% Similarity=-0.046 Sum_probs=163.5
Q ss_pred hcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHH
Q 018924 25 KTGNFEKLDSLMHEMEENGIT---YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD 101 (349)
Q Consensus 25 ~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 101 (349)
..|++++|+..|+++.+.... .+..++..+..++...|++++|...|++.. +.+. .+..+|..+..++...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHccCHH
Confidence 457788888888888775321 134577777888888888888888888876 4332 45677788888888888888
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 018924 102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181 (349)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 181 (349)
+|.+.|++..+. .|+...++..+...+...|++++|...|+..... .|+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888888888774 3333367888888888888888888888833222 3444344444455566688888888887776
Q ss_pred hcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc---chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 018924 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI---HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV 258 (349)
Q Consensus 182 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (349)
... +++...+ .++..+...++.++|...+.......... +...+..+...|...|++++|...|++++
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------- 242 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV------- 242 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH-------
Confidence 653 3344333 36666677777778888777766533211 14667777788888888888888888877
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 018924 259 KWKPSVESLAACLDYFKDEGDIGGAENFI 287 (349)
Q Consensus 259 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 287 (349)
...|+. +.....++...|++++|.+.+
T Consensus 243 ~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred hCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 335532 122244556667777776654
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=2.7e-15 Score=120.15 Aligned_cols=204 Identities=14% Similarity=-0.014 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..+..+...+...|++++|.+.|+++.+. .|+...++..+...+...|++++|.+.++......+.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 44455555555556666666666555543 2222245555555566666666666665532222333444555555556
Q ss_pred hccCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924 165 LKLDDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 243 (349)
...|++++|.++++++.+.+..| +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666555421122 2344555555666666666666666666554322 345555666666666666666
Q ss_pred HHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924 244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 297 (349)
..+++++.+. ...+...+..+...+...|+.++|.+.++.+.+..+.+
T Consensus 195 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 195 RQYYDLFAQG------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHTT------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHh------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 6666666531 12244455555556666666666666666665554433
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=1.7e-15 Score=128.08 Aligned_cols=244 Identities=10% Similarity=0.040 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924 49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL-LDKALAMLKKSEEQIKGAKVNSAYNVIL 127 (349)
Q Consensus 49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (349)
..|..+..++...|++++|+..+++.. ..+. -+..+|+.+..++...|+ +++|+..|++..+. .|+...+|+.+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al-~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAI-ELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHH-HhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 467777778888888888888888877 4333 456778888888888886 88888888888874 455547888888
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCcHH
Q 018924 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR-NGLLE 206 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 206 (349)
.++...|++++|+..|+......+-+...|..+..++...|++++|...++++++.. +.+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888885555556667788888888888888888999888888865 4466778888888888 56657
Q ss_pred HH-----HHHHHHHHHcCcccchhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC-
Q 018924 207 KA-----ENLVNHEKLKGREIHVKSWYYLATGYRQNS--QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG- 278 (349)
Q Consensus 207 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g- 278 (349)
+| ...|++.....+. +...|+.+...+...| ++++|++.+.++ + ....+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~------~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q------PSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T------TTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c------cCCCCHHHHHHHHHHHHHHhc
Confidence 76 4778888876543 5667888888888877 688888888776 2 33446777888888888764
Q ss_pred --------ChhhHHHHHHHH-hhCCCCCchhHHHHh
Q 018924 279 --------DIGGAENFIELL-NDKGFIPTDLQDKLL 305 (349)
Q Consensus 279 --------~~~~a~~~~~~~-~~~~~~~~~~~~~l~ 305 (349)
.+++|..+++++ .+.++.....|..+.
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 258899999998 676666666676665
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=7.9e-16 Score=122.49 Aligned_cols=205 Identities=9% Similarity=0.028 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL 167 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (349)
..+...+...|++++|...|+++.+. .|+...++..+...+...|++++|...++......+.+...+..+...+...
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ---------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 33344444444444444444444332 1222234444444444444444444444422222222333444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM 247 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 247 (349)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.+
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444432 223334444444555555555555555554443221 3444445555555555555555555
Q ss_pred HHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHH
Q 018924 248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD 302 (349)
Q Consensus 248 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 302 (349)
+++.+. . ..+..++..+...+...|++++|...++.+.+..+.+...+.
T Consensus 183 ~~~~~~-----~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 183 AAVTEQ-----D-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHH-----C-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHh-----C-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 555532 1 123444555555555555555555555555554444443333
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=7.3e-16 Score=132.70 Aligned_cols=280 Identities=15% Similarity=0.069 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhcC---C-CCCccH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDR----YTYCTRLSAYADASDHEGIDKILTMMEAD---P-NVALDW 84 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~ 84 (349)
...+..+...+...|++++|+..|+++.+.+.. +. ..+..+..++...|++++|...+++.... . +.....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 445566777889999999999999999987432 33 47888889999999999999998876511 1 122345
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc----CCcchhhHHHHHHHHhhcCC-----------------HHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIK----GAKVNSAYNVILTLYGKYGK-----------------KDDVLRIW 143 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 143 (349)
.++..+...|...|++++|...+++..+... .+....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6778899999999999999999998876421 23333588899999999999 99999998
Q ss_pred HH-HH--h--hcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCcHHHHHHHH
Q 018924 144 EL-YK--K--AVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPNFLIDVYCRNGLLEKAENLV 212 (349)
Q Consensus 144 ~~-~~--~--~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 212 (349)
+. .. . +.. ....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 82 11 1 111 12347888889999999999999999988763211 11 226788999999999999999999
Q ss_pred HHHHHcCcc-----cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 018924 213 NHEKLKGRE-----IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI 287 (349)
Q Consensus 213 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 287 (349)
++....... ....++..+...|...|++++|.+++++++..............++..+...|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988763211 124678888999999999999999999988652111111112457788888999999999999999
Q ss_pred HHHhhC
Q 018924 288 ELLNDK 293 (349)
Q Consensus 288 ~~~~~~ 293 (349)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=6.3e-15 Score=119.54 Aligned_cols=243 Identities=12% Similarity=0.042 Sum_probs=188.5
Q ss_pred hcCChHHHHHHHHHhhcCCCC---CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924 60 DASDHEGIDKILTMMEADPNV---ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK 136 (349)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (349)
..|++++|+..++++. +... +.+..++..+...+...|++++|...|++..+. .|+...+|..+...+...|++
T Consensus 17 ~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCH
Confidence 4578999999999998 4321 135677889999999999999999999999885 444447999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924 137 DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216 (349)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 216 (349)
++|...|+......+.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999555555566788999999999999999999999999885 4554455555566677899999999998888
Q ss_pred HcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924 217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-----VESLAACLDYFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 217 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 291 (349)
.... ++...+ .++..+...++.++|.+.++++... .|+ ...+..+...|.+.|++++|...++.+.
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATD-------NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS-------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc-------cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7543 244444 4777788888999999999988732 332 5778889999999999999999999999
Q ss_pred hCCCCCchhHHHHhhhhhcC--cchHHHH
Q 018924 292 DKGFIPTDLQDKLLDNVQNG--KSNLETL 318 (349)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~g--~~a~~~~ 318 (349)
...+.+...+.. ++...| ++|++.+
T Consensus 243 ~~~p~~~~~~~~--~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFVEHRY--ALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCHHHHH--HHHHHHHHHHC----
T ss_pred hCCchhHHHHHH--HHHHHHHHHhhHHHH
Confidence 887655443321 444444 5555544
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=1.7e-15 Score=126.33 Aligned_cols=281 Identities=17% Similarity=0.114 Sum_probs=209.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhc---CCC-CCcc
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD----RYTYCTRLSAYADASDHEGIDKILTMMEA---DPN-VALD 83 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~ 83 (349)
+...+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++... ..+ .+..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3456667788899999999999999999886422 3 35788889999999999999999887641 111 2123
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc----chhhHHHHHHHHhhcCC--------------------HHHH
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK----VNSAYNVILTLYGKYGK--------------------KDDV 139 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~--------------------~~~a 139 (349)
..++..+...+...|++++|...+++..+.....+ ...++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56678899999999999999999999876432211 12478889999999999 9999
Q ss_pred HHHHHH-HHh--hc--c-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCcHHHH
Q 018924 140 LRIWEL-YKK--AV--K-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPNFLIDVYCRNGLLEKA 208 (349)
Q Consensus 140 ~~~~~~-~~~--~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a 208 (349)
...++. ... .. . .....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999882 111 11 1 12346788888999999999999999988753111 11 23677888899999999999
Q ss_pred HHHHHHHHHcCcc-----cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH
Q 018924 209 ENLVNHEKLKGRE-----IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283 (349)
Q Consensus 209 ~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 283 (349)
...+++..+.... ....++..+...+...|++++|...++++...............++..+...|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999987753211 11456788889999999999999999998865211111111245777888899999999999
Q ss_pred HHHHHHHhhC
Q 018924 284 ENFIELLNDK 293 (349)
Q Consensus 284 ~~~~~~~~~~ 293 (349)
...+++....
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=4.7e-15 Score=125.41 Aligned_cols=249 Identities=11% Similarity=-0.009 Sum_probs=203.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
+...|+.+...+.+.|++++|+..|++.++.... +...|+.+..++...|+ +++|+..+++.. ..+. -+..+|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-~l~P-~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAII-EEQP-KNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHCC-CCHHHHHHH
Confidence 4677888999999999999999999999987533 67789999999999997 999999999998 5444 567889999
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc-cCC
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK-LDD 169 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~ 169 (349)
..++...|++++|+..|+++.+. .|+...+|..+..++...|++++|+..|+......+.+...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999985 555558999999999999999999999995555566677889999999998 666
Q ss_pred HHHH-----HHHHHHHHhcCCCCCcchHHHHHHHHHhcC--cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC----
Q 018924 170 LESA-----EKIFEEWESQALCYDTRIPNFLIDVYCRNG--LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS---- 238 (349)
Q Consensus 170 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 238 (349)
.++| ...+++..+.. +-+...|+.+...+...| ++++|...+.++ +..+ .+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccc
Confidence 5777 58888888764 445678888888898888 689999999888 4332 35677888888888864
Q ss_pred -----CHHHHHHHHHHH-HHHhcccccCCCC-HHHHHHHHHHHH
Q 018924 239 -----QIHKAVEAMKKV-LAAYQTLVKWKPS-VESLAACLDYFK 275 (349)
Q Consensus 239 -----~~~~a~~~~~~~-~~~~~~~~~~~p~-~~~~~~ll~~~~ 275 (349)
.+++|+++|+++ . .+.|. ...|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~-------~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAK-------EKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHH-------TTCGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH-------HhCchhHHHHHHHHHHHH
Confidence 358999999998 5 55664 455555555443
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=4.4e-15 Score=127.44 Aligned_cols=301 Identities=17% Similarity=0.091 Sum_probs=222.1
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhc---CCCCC-
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD----RYTYCTRLSAYADASDHEGIDKILTMMEA---DPNVA- 81 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~- 81 (349)
.+....+......+...|++++|...|++..+.+.. + ..++..+...+...|++++|...+++... ..+..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 456777888889999999999999999999887432 3 25788888999999999999999887641 11222
Q ss_pred ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC----CcchhhHHHHHHHHhhcCC--------------------HH
Q 018924 82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG----AKVNSAYNVILTLYGKYGK--------------------KD 137 (349)
Q Consensus 82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~--------------------~~ 137 (349)
....++..+...|...|++++|...+++..+.... +....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 23566788999999999999999999988764222 1112478899999999999 99
Q ss_pred HHHHHHHHHHh---hc--c-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCcHH
Q 018924 138 DVLRIWELYKK---AV--K-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPNFLIDVYCRNGLLE 206 (349)
Q Consensus 138 ~a~~~~~~~~~---~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~ 206 (349)
+|...++.... .. . ....++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99999882111 11 1 12346888899999999999999999998753211 11 236788899999999999
Q ss_pred HHHHHHHHHHHcCcc----c-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChh
Q 018924 207 KAENLVNHEKLKGRE----I-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIG 281 (349)
Q Consensus 207 ~a~~~~~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 281 (349)
+|...+++..+.... + ...++..+...|...|++++|.+.++++.+.............++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988753211 1 14578888999999999999999999988652111111112567788888999999999
Q ss_pred hHHHHHHHHhhC----CC--CCchhHHHHh-hhhhcC
Q 018924 282 GAENFIELLNDK----GF--IPTDLQDKLL-DNVQNG 311 (349)
Q Consensus 282 ~a~~~~~~~~~~----~~--~~~~~~~~l~-~~~~~g 311 (349)
+|...+++..+. +. ....++..+. .+...|
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999999887654 11 1233455566 666666
No 48
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=6.4e-14 Score=124.74 Aligned_cols=300 Identities=9% Similarity=-0.038 Sum_probs=187.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
|...|..++. +.+.|++++|..+|+++.+.. +-+...|..++..+.+.|++++|..+|++.. ... |+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral-~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL-MKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcC--CChHHHHHHH
Confidence 6778888887 477888999999998888763 3366688888888888888888888888887 322 4544444333
Q ss_pred H------------------------------------------HHhh---------cCcHHHHHHHHHHHHHhhcCCcch
Q 018924 92 N------------------------------------------GYGK---------VGLLDKALAMLKKSEEQIKGAKVN 120 (349)
Q Consensus 92 ~------------------------------------------~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~ 120 (349)
. ...+ .|+++.|..+|++..+. +..+..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHH
Confidence 2 1111 34555666666665541 111110
Q ss_pred hhHHHHHHHH-------------hhcCCHH--------------------------------------------------
Q 018924 121 SAYNVILTLY-------------GKYGKKD-------------------------------------------------- 137 (349)
Q Consensus 121 ~~~~~l~~~~-------------~~~~~~~-------------------------------------------------- 137 (349)
..|....... ...+++.
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 1222111100 0011111
Q ss_pred ----------HHHHHHHHHHhhccCChhhHHHHHHHHhc-------cCCHH-------HHHHHHHHHHhcCCCCCcchHH
Q 018924 138 ----------DVLRIWELYKKAVKVLNNGYRNVISSLLK-------LDDLE-------SAEKIFEEWESQALCYDTRIPN 193 (349)
Q Consensus 138 ----------~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 193 (349)
.+..+|+......+.+...|...+..+.+ .|+++ +|..++++..+.-.+.+...|.
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 12222321111222333445555555553 57766 7888888877532244566778
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCcccc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHH
Q 018924 194 FLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACL 271 (349)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll 271 (349)
.++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|++++|.++|+++.+. .|+ ...+....
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-------~~~~~~~~~~~a 397 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED-------ARTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------TTCCTHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------cCCchHHHHHHH
Confidence 8888888888888888888888874322 2 246777777777888888888888888742 332 22222222
Q ss_pred H-HHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924 272 D-YFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS 325 (349)
Q Consensus 272 ~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~ 325 (349)
. .+...|+.++|..+|+...+..|.+...|..++ .+.+.| ++|..+|++....+
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2 233578888898888888877776777888888 777777 78899998887753
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=1e-13 Score=112.43 Aligned_cols=223 Identities=12% Similarity=0.001 Sum_probs=140.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD----ASDHEGIDKILTMMEADPNVALDWVIY 87 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 87 (349)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...|++.. +.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HCC---CHHHH
Confidence 45566667777777777777777777776632 44566666667777 777777777777766 333 45566
Q ss_pred HHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhhHHH
Q 018924 88 ATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNNGYRN 159 (349)
Q Consensus 88 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (349)
..+...|.. .+++++|.+.|++..+.+ +. .++..+...|.. .+++++|+..|+...... +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~-~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YA-EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Cc-cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence 667777777 777777777777766542 33 566667777776 777777777776222211 3445555
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924 160 VISSLLK----LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLA 231 (349)
Q Consensus 160 li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 231 (349)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 5566655 666667776666666543 33455556666666 666666666666666543 244555555
Q ss_pred HHHhc----CCCHHHHHHHHHHHHHH
Q 018924 232 TGYRQ----NSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 232 ~~~~~----~~~~~~a~~~~~~~~~~ 253 (349)
..|.. .+++++|.++|++..+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 66665 66666666666666644
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1.2e-15 Score=121.35 Aligned_cols=202 Identities=13% Similarity=0.014 Sum_probs=116.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
+...|..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...+++.. +... .+..++..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKAL-ELDS-SAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-cchHHHHHHH
Confidence 44556666667777777777777777776643 2245566666777777777777777777665 3222 3456666677
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
..+...|++++|.+.++++.+.. |+...++..+...+...|++++|...++......+.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777766643 2222566667777777777777777776333334445556666666677777777
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (349)
+|...++.+.+.. +.+..++..+...|...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777776666543 3345566666666777777777777777666643
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=4.6e-14 Score=114.47 Aligned_cols=228 Identities=12% Similarity=-0.004 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhh
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSA 122 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 122 (349)
+..++..+...+...|++++|...|++.. +. .+...+..+...|.. .+++++|.+.|++..+.+ +. .+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~-~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-DL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS-NG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-HH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CH-HH
Confidence 56678888888999999999999999988 42 345677788899999 999999999999988754 44 78
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 018924 123 YNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK----LDDLESAEKIFEEWESQALCYDTRIPNF 194 (349)
Q Consensus 123 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (349)
+..+...|.. .+++++|+..|+..... .+...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 8899999999 99999999999932222 266778888888988 999999999999998865 4567777
Q ss_pred HHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcccccCCCCHHH
Q 018924 195 LIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ----NSQIHKAVEAMKKVLAAYQTLVKWKPSVES 266 (349)
Q Consensus 195 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 266 (349)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.++|++..+. + | ...
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~--~-~~a 220 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-----E--N-GGG 220 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-----T--C-HHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-----C--C-HHH
Confidence 8888888 899999999999988864 45677888888888 99999999999999864 2 3 667
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHhhCCCCCc
Q 018924 267 LAACLDYFKD----EGDIGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 267 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 298 (349)
+..+...|.. .+++++|...++...+.++++.
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 7777888888 8999999999999988766443
No 52
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=6.4e-13 Score=117.11 Aligned_cols=16 Identities=13% Similarity=-0.195 Sum_probs=7.1
Q ss_pred cCcHHHHHHHHHHHHH
Q 018924 202 NGLLEKAENLVNHEKL 217 (349)
Q Consensus 202 ~~~~~~a~~~~~~~~~ 217 (349)
.+++++|..+|++..+
T Consensus 272 ~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAE 287 (490)
T ss_dssp SCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3444444444444443
No 53
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=8.6e-13 Score=116.29 Aligned_cols=284 Identities=11% Similarity=0.004 Sum_probs=216.6
Q ss_pred cHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhcCCCCCcc
Q 018924 12 TTVVYNSMLKLYYK----TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD----ASDHEGIDKILTMMEADPNVALD 83 (349)
Q Consensus 12 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 83 (349)
+..++..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|..+|++.. +.+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---C
Confidence 66777888888888 899999999999998875 66788888888988 899999999999987 544 4
Q ss_pred HHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChh
Q 018924 84 WVIYATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNN 155 (349)
Q Consensus 84 ~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 155 (349)
...+..|...|.. .+++++|.+.|++..+.+ +. .++..|...|.. .+++++|++.|+..... .+..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~-~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD-SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 5666778888888 889999999999988753 33 678888888887 88999999999933222 3567
Q ss_pred hHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhH
Q 018924 156 GYRNVISSLLK----LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSW 227 (349)
Q Consensus 156 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 227 (349)
.+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 78888888887 899999999999998865 45677778888886 789999999999988764 44566
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhc-----CChhhHHHHHHHHhhCCCCCc
Q 018924 228 YYLATGYRQ----NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE-----GDIGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 228 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~ 298 (349)
..+...|.. .+++++|.++|++..+. + +...+..+...|... ++.++|...++...+.+. .
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~ 328 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--A 328 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--H
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--H
Confidence 666666766 78899999999888753 2 344555556666655 677777777777666542 3
Q ss_pred hhHHHHh-hhhhcC-----cchHHHHHHHHhC
Q 018924 299 DLQDKLL-DNVQNG-----KSNLETLRELYGN 324 (349)
Q Consensus 299 ~~~~~l~-~~~~~g-----~~a~~~~~~m~~~ 324 (349)
..+..+. .|.+.| ++|++.|++..+.
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 3444455 444433 5666666666554
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=2.7e-13 Score=111.99 Aligned_cols=237 Identities=8% Similarity=-0.024 Sum_probs=170.4
Q ss_pred cHHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHH
Q 018924 12 TTVVYNSMLKLYYKT----GNF----EKLDSLMHEMEENGITYDRYTYCTRLSAYAD-------ASDH-------EGIDK 69 (349)
Q Consensus 12 ~~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~ 69 (349)
+...|...+..-.+. ++. ++|..+|++..... +-+...|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 456777777765554 233 67888999988763 3366788877777653 5775 88999
Q ss_pred HHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchh-hHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 018924 70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKK 148 (349)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (349)
+|++.. ..-.+-+...|..++..+.+.|++++|.++|++..+. .|.... +|..++..+.+.|++++|..+|+....
T Consensus 86 ~~~rAl-~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 86 IYERAI-STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHH-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHH-HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999888 4212235567888888888999999999999998873 444423 788888888888999999988884444
Q ss_pred hccCChhhHHHHHHHHh-ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC-ccc--ch
Q 018924 149 AVKVLNNGYRNVISSLL-KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG-REI--HV 224 (349)
Q Consensus 149 ~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~ 224 (349)
..+++...|...+.... ..|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ..
T Consensus 163 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 33444444544333322 3688888888888887753 4456778888888888888888888888888752 233 35
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
..|..++..+.+.|+.++|..+++++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57777788888888888888888888865
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=6.6e-15 Score=126.72 Aligned_cols=274 Identities=14% Similarity=0.012 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-cc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----cCCcchh
Q 018924 49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQI----KGAKVNS 121 (349)
Q Consensus 49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~ 121 (349)
..+..+...+...|++++|...|++.. +.+.. +. ..++..+...|...|++++|...+++..+.. ..+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAI-QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHH-HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345566778889999999999999987 43321 11 2468889999999999999999999987641 1233336
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhh------ccCChhhHHHHHHHHhccCC-----------------HHHHHHHHH
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKA------VKVLNNGYRNVISSLLKLDD-----------------LESAEKIFE 178 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~ 178 (349)
++..+...|...|++++|...++..... .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7889999999999999999999822111 12233578888999999999 999999998
Q ss_pred HHHhc----CC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-cc----hhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924 179 EWESQ----AL-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-IH----VKSWYYLATGYRQNSQIHKAVEAMK 248 (349)
Q Consensus 179 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~ 248 (349)
+..+. +. .....++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 87642 11 112346778889999999999999999988763211 11 2378888999999999999999999
Q ss_pred HHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CC----chhHHHHh-hhhhcC--cchHHHHH
Q 018924 249 KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF--IP----TDLQDKLL-DNVQNG--KSNLETLR 319 (349)
Q Consensus 249 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~-~~~~~g--~~a~~~~~ 319 (349)
++...............++..+...+...|++++|...+++...... .+ ...+..+. .+.+.| ++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99875221111111256788888899999999999999998876421 11 33677777 888888 78888888
Q ss_pred HHHh
Q 018924 320 ELYG 323 (349)
Q Consensus 320 ~m~~ 323 (349)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 56
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=5.5e-13 Score=118.71 Aligned_cols=211 Identities=11% Similarity=0.060 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHhh-------cCCHH-------HHHHHHHHHHhh-ccCChhhHHHHHHHHhc
Q 018924 102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGK-------YGKKD-------DVLRIWELYKKA-VKVLNNGYRNVISSLLK 166 (349)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~-~~~~~~~~~~li~~~~~ 166 (349)
++..+|++.... .|..+..|..++..+.. .|+++ +|..+|+..... .+.+...|..++..+.+
T Consensus 256 ~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 344555555553 23444678888887775 68887 899999944443 34456788999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHH-HhcCCCHHHH
Q 018924 167 LDDLESAEKIFEEWESQALCYDT--RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-YRQNSQIHKA 243 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a 243 (349)
.|++++|..+|+.+.+. .|+. ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +...|++++|
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHH
Confidence 99999999999999985 4542 47888999999999999999999999875322 23333222222 3468999999
Q ss_pred HHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch----hHHHHh-hhhhcC--cchH
Q 018924 244 VEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD----LQDKLL-DNVQNG--KSNL 315 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~-~~~~~g--~~a~ 315 (349)
..+|+..++. .| +...|..++..+.+.|+.++|..+|+++....+.++. .|...+ ...+.| +.+.
T Consensus 411 ~~~~e~al~~-------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 411 FKIFELGLKK-------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHH-------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHH-------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999965 45 5788999999999999999999999999987654433 677777 767778 7888
Q ss_pred HHHHHHHhC
Q 018924 316 ETLRELYGN 324 (349)
Q Consensus 316 ~~~~~m~~~ 324 (349)
.+++++.+.
T Consensus 484 ~~~~r~~~~ 492 (530)
T 2ooe_A 484 KVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887653
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.2e-15 Score=124.49 Aligned_cols=242 Identities=14% Similarity=0.107 Sum_probs=167.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcC------
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-------GITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD------ 77 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 77 (349)
.+..+|..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35778999999999999999999999998873 22334557888999999999999999999887621
Q ss_pred CCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh------cCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHh--
Q 018924 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI------KGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKK-- 148 (349)
Q Consensus 78 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-- 148 (349)
.+.+....++..+...|...|++++|.+.|++..+.. ..+....++..+...+...|++++|+..++ ....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2233456778889999999999999999999987642 224443678889999999999999999998 3222
Q ss_pred ----h-ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCCcc-hHH------HHHHHHHhcCcHHHHH
Q 018924 149 ----A-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ-------ALCYDTR-IPN------FLIDVYCRNGLLEKAE 209 (349)
Q Consensus 149 ----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~------~l~~~~~~~~~~~~a~ 209 (349)
+ .+....++..+...+...|++++|...++++.+. ...+... .+. .+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1 1223356888889999999999999999988753 1122222 222 1222233344455555
Q ss_pred HHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
..+........ .+..++..+...|...|++++|.++|+++++.
T Consensus 265 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 265 GWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66666654332 25567888888899999999999999888754
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=5.3e-14 Score=106.96 Aligned_cols=166 Identities=16% Similarity=0.121 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS 162 (349)
Q Consensus 83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 162 (349)
+..+|..+...|.+.|++++|++.|++..+. .|+...+|..+..+|...|++++|...++......+.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4556777777777777777777777777664 34444677777777777777777777777444444445556666666
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH
Q 018924 163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242 (349)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 242 (349)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|...|++..+..+. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 6777777777777777766643 344556666777777777777777777777765433 55667777777777777777
Q ss_pred HHHHHHHHHH
Q 018924 243 AVEAMKKVLA 252 (349)
Q Consensus 243 a~~~~~~~~~ 252 (349)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777764
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=2.2e-14 Score=122.98 Aligned_cols=278 Identities=14% Similarity=-0.005 Sum_probs=204.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-cc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----cCC
Q 018924 45 TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQI----KGA 117 (349)
Q Consensus 45 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~ 117 (349)
.+....+......+...|++++|...+++.. +.+.. +. ..++..+...+...|++++|...+++..... ..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445567778888999999999999999987 33321 21 3567889999999999999999999876532 123
Q ss_pred cchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh--ccCC----hhhHHHHHHHHhccCC--------------------HH
Q 018924 118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKA--VKVL----NNGYRNVISSLLKLDD--------------------LE 171 (349)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~--------------------~~ 171 (349)
....++..+...+...|++++|...++..... ..++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 33357888999999999999999999822111 1122 3478888899999999 99
Q ss_pred HHHHHHHHHHhc----CCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-c----chhhHHHHHHHHhcCCCHH
Q 018924 172 SAEKIFEEWESQ----ALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-I----HVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 172 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~ 241 (349)
+|...+++..+. +.. ....++..+...|...|++++|...+++..+.... + ...++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887642 111 12346778889999999999999999988753211 1 1237888899999999999
Q ss_pred HHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CC----chhHHHHh-hhhhcC--c
Q 018924 242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF--IP----TDLQDKLL-DNVQNG--K 312 (349)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~-~~~~~g--~ 312 (349)
+|...++++....+..........++..+...|...|++++|...++....... .+ ...+..+. .+.+.| +
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998865211111111156778888899999999999999988876422 12 34666777 888888 7
Q ss_pred chHHHHHHHHh
Q 018924 313 SNLETLRELYG 323 (349)
Q Consensus 313 ~a~~~~~~m~~ 323 (349)
+|...+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877543
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=1.6e-14 Score=120.43 Aligned_cols=275 Identities=14% Similarity=0.008 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-cc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----cCCcchh
Q 018924 49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQI----KGAKVNS 121 (349)
Q Consensus 49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~ 121 (349)
..+......+...|++++|...+++.. +.... +. ...+..+...+...|++++|.+.+++..+.. ..+....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556777889999999999999987 33321 11 4677889999999999999999999876531 1223236
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhhc--cCC----hhhHHHHHHHHhccCC--------------------HHHHHH
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKAV--KVL----NNGYRNVISSLLKLDD--------------------LESAEK 175 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~~~--------------------~~~a~~ 175 (349)
++..+...+...|++++|...++...... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 78899999999999999999998222111 122 2378888899999999 999999
Q ss_pred HHHHHHhc----CC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-----cchhhHHHHHHHHhcCCCHHHHHH
Q 018924 176 IFEEWESQ----AL-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-----IHVKSWYYLATGYRQNSQIHKAVE 245 (349)
Q Consensus 176 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~ 245 (349)
.+++..+. +. .....++..+...+...|++++|...+++..+.... ....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99886542 11 112346778888999999999999999987753111 113378888899999999999999
Q ss_pred HHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CC----chhHHHHh-hhhhcC--cchHH
Q 018924 246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF--IP----TDLQDKLL-DNVQNG--KSNLE 316 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~-~~~~~g--~~a~~ 316 (349)
.+++................++..+...+...|++++|...++.+....+ .+ ...+..+. .+.+.| ++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99998865211111111256778888899999999999999988766422 12 33566777 888888 89999
Q ss_pred HHHHHHhC
Q 018924 317 TLRELYGN 324 (349)
Q Consensus 317 ~~~~m~~~ 324 (349)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99988764
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=1e-13 Score=118.23 Aligned_cols=296 Identities=12% Similarity=-0.013 Sum_probs=202.8
Q ss_pred HHhcCChhHHHHHHHHHHHC--CCCCCH--HHHHHHHHHH--HhcCChHHHH-----------HHHHHhhcCCCCCccHH
Q 018924 23 YYKTGNFEKLDSLMHEMEEN--GITYDR--YTYCTRLSAY--ADASDHEGID-----------KILTMMEADPNVALDWV 85 (349)
Q Consensus 23 ~~~~g~~~~a~~~~~~m~~~--~~~p~~--~~~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 85 (349)
+.+.+++++|..+++++.+. ..+.|. ..|-.++..- ...++++.+. +.++.+. ... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~-~~~--~~~~ 98 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID-KKQ--ARLT 98 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH-HHT--HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH-hcC--CCch
Confidence 46789999999999998764 332333 3444444321 1233344444 6666664 211 1212
Q ss_pred H------HHHHHHHHhhcCcHHHHHHHHHHHHHhhc----CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh--ccCC
Q 018924 86 I------YATVGNGYGKVGLLDKALAMLKKSEEQIK----GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA--VKVL 153 (349)
Q Consensus 86 ~------~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~ 153 (349)
. +......+...|++++|...|++..+... .+....++..+...|...|+++.|...++....- -.++
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 2 22366778899999999999999876411 1222367899999999999999999999832221 1121
Q ss_pred -----hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCcHHHHHHHHHHHHH-----c
Q 018924 154 -----NNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPNFLIDVYCRNGLLEKAENLVNHEKL-----K 218 (349)
Q Consensus 154 -----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 218 (349)
..+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+ .
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 347888999999999999999999988753211 11 23688899999999999999999998876 2
Q ss_pred CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCC
Q 018924 219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD---IGGAENFIELLNDKGF 295 (349)
Q Consensus 219 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~ 295 (349)
..+....++..+...|...|++++|.+.+++..+..... +-......+..+...+...|+ +++|..+++.... .+
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-~~ 336 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA-GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-YA 336 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-HH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-HH
Confidence 213346678899999999999999999999988651100 111122335667777888888 7777777766521 11
Q ss_pred CCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 296 IPTDLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 296 ~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
.....+..+. .|.+.| ++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234566677 888888 899999988754
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=7.3e-13 Score=109.37 Aligned_cols=221 Identities=11% Similarity=-0.035 Sum_probs=171.2
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHh-------hcCcH-------HHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924 65 EGIDKILTMMEADPNVALDWVIYATVGNGYG-------KVGLL-------DKALAMLKKSEEQIKGAKVNSAYNVILTLY 130 (349)
Q Consensus 65 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (349)
++|..+|++.. .... .+...|..++..+. +.|++ ++|..+|++..+. +.|+....|..++..+
T Consensus 33 ~~a~~~~~~al-~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCL-LVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHH-HHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHH
Confidence 67888888887 4332 56677777777765 35776 8999999999873 2455546899999999
Q ss_pred hhcCCHHHHHHHHHHHHhhccCC-hh-hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-hcCcHHH
Q 018924 131 GKYGKKDDVLRIWELYKKAVKVL-NN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC-RNGLLEK 207 (349)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 207 (349)
...|++++|..+|+.... ..|+ .. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLA-IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHT-SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHh-ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999994333 4454 33 78999999999999999999999998864 344445544333322 3699999
Q ss_pred HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccccc-CCC--CHHHHHHHHHHHHhcCChhhHH
Q 018924 208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK-WKP--SVESLAACLDYFKDEGDIGGAE 284 (349)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~ 284 (349)
|..+|++..+..+. +...|..++..+.+.|++++|..+|++++.. . +.| ....|..++....+.|+.+.|.
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS-----SSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999876443 6778889999999999999999999999863 2 355 3667888888888999999999
Q ss_pred HHHHHHhhCCCC
Q 018924 285 NFIELLNDKGFI 296 (349)
Q Consensus 285 ~~~~~~~~~~~~ 296 (349)
.+++++.+..|.
T Consensus 262 ~~~~~a~~~~p~ 273 (308)
T 2ond_A 262 KVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHccc
Confidence 999999887664
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.1e-14 Score=120.25 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-------CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh------
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADP-------NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------ 113 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 113 (349)
+..++..+...+...|++++|..+++++. +. ..+....++..+...|...|++++|...+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34578888899999999999999998887 31 23345677888999999999999999999998764
Q ss_pred hcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHh------hc-cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc--
Q 018924 114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKK------AV-KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ-- 183 (349)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 183 (349)
+..+....++..+...+...|++++|...++ .... +. +.....+..+...+...|++++|..+++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2234443678899999999999999999998 2221 11 223456888889999999999999999988764
Q ss_pred ----CCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC-------cccc-------hhhHHHHHHHHhcCCCHHHHH
Q 018924 184 ----ALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG-------REIH-------VKSWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 184 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~li~~~~~~~~~~~a~ 244 (349)
+..| ...++..+...|...|++++|...++++.+.. ..+. ...+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1122 24467788899999999999999999887531 1111 112223333444556666777
Q ss_pred HHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 245 EAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
..++..... .| +..++..+..+|.+.|++++|...+++..+.
T Consensus 265 ~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 265 GWYKACKVD-------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCC-------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777776632 33 4577888888999999999999999887653
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.6e-13 Score=120.08 Aligned_cols=213 Identities=12% Similarity=0.009 Sum_probs=175.7
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHH
Q 018924 64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL-DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI 142 (349)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (349)
++++...++... .... .+...+..+...+...|++ ++|++.|++..+. .|+...+|..+..+|...|++++|...
T Consensus 84 ~~~al~~l~~~~-~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVL-GSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHH-TTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566777777766 4332 5778888999999999999 9999999999885 455547999999999999999999999
Q ss_pred HHHHHhhccCChhhHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--------CcH
Q 018924 143 WELYKKAVKVLNNGYRNVISSLLKL---------DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN--------GLL 205 (349)
Q Consensus 143 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 205 (349)
|+... ...|+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |++
T Consensus 160 ~~~al-~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 160 FSGAL-THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHH-TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHH-hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99332 3346678888999999999 99999999999998864 45677888999999988 999
Q ss_pred HHHHHHHHHHHHcCcc--cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhh
Q 018924 206 EKAENLVNHEKLKGRE--IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 206 ~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 282 (349)
++|...|++..+..+. -+...|..+...|...|++++|.+.|+++.+. .| +...+..+...+...|++++
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-------DPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986531 27788999999999999999999999999864 45 46678888888888998888
Q ss_pred HHHHHHH
Q 018924 283 AENFIEL 289 (349)
Q Consensus 283 a~~~~~~ 289 (349)
|...+..
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 8875543
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=3e-13 Score=102.74 Aligned_cols=166 Identities=14% Similarity=0.098 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
+...|..+...+.+.|++++|++.|++..+.... +..++..+..++.+.|++++|...+.... .... .+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFV-VLDT-TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCc-hhHHHHHHHH
Confidence 3444555555555555555555555555544322 34445555555555555555555555443 2121 2333344444
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
..+...++++.|...+.+..+. .|+...++..+...+...|++++|++.|+......+.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 4455555555555555554442 22222344444444555555555554444222222333334444444444444444
Q ss_pred HHHHHHHHHHh
Q 018924 172 SAEKIFEEWES 182 (349)
Q Consensus 172 ~a~~~~~~~~~ 182 (349)
+|.+.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 66
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.2e-12 Score=114.72 Aligned_cols=205 Identities=13% Similarity=-0.020 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhc-------CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc----
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEA-------DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK---- 115 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---- 115 (349)
....|+.+...+...|++++|++.|++... ...-+....+|+.+..+|...|++++|...+++..+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 345799999999999999999999987641 111223467899999999999999999999998865321
Q ss_pred --CCcchhhHHHHHHHHhhc--CCHHHHHHHHHHHHhhccCChhhHHHHHHH---HhccCCHHHHHHHHHHHHhcCCCCC
Q 018924 116 --GAKVNSAYNVILTLYGKY--GKKDDVLRIWELYKKAVKVLNNGYRNVISS---LLKLDDLESAEKIFEEWESQALCYD 188 (349)
Q Consensus 116 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (349)
.+....++..+..++... +++++|+..|+......|.+...+..+..+ +...++.++|.+.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 122324666666666654 579999999994444344444455555444 345677888999999888764 345
Q ss_pred cchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 189 TRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 189 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
..++..+...+.. .+++++|...+++.....+. +...+..+...|...|++++|.+.++++.+.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 5566666555554 46788999999998886543 6678889999999999999999999999865
No 67
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=2.9e-12 Score=120.50 Aligned_cols=267 Identities=12% Similarity=0.135 Sum_probs=173.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG 98 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 98 (349)
+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCC
Confidence 45667778888888888877521 1222233322 5667777777776553 2466777888888888
Q ss_pred cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHH
Q 018924 99 LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178 (349)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 178 (349)
++++|.+.|.+. .+. ..|..++.++.+.|++++|.+.+.|..... +++...+.++.+|++.++++....+.
T Consensus 1120 ~~kEAIdsYiKA------dD~-say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDP-SSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 888888888552 233 567778888888888888888887544333 33333445777777777776433332
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---
Q 018924 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ--- 255 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--- 255 (349)
+ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++......
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWke 1255 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 1255 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHH
Confidence 1 334445556777777777777777777663 3667777777777777777777666532200
Q ss_pred ----------------ccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHH
Q 018924 256 ----------------TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLET 317 (349)
Q Consensus 256 ----------------~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~ 317 (349)
...++..++..+..++..|.+.|.+++|..+++............|.-+. .|++.. ++.++.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 00012235566778888899999999999999888877666666788888 888888 555544
Q ss_pred HHHHHhC
Q 018924 318 LRELYGN 324 (349)
Q Consensus 318 ~~~m~~~ 324 (349)
++-...+
T Consensus 1336 lk~f~~r 1342 (1630)
T 1xi4_A 1336 LELFWSR 1342 (1630)
T ss_pred HHHHHHh
Confidence 4444333
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=8.7e-14 Score=121.82 Aligned_cols=208 Identities=13% Similarity=0.009 Sum_probs=175.6
Q ss_pred cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH-HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHH
Q 018924 99 LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK-DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF 177 (349)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 177 (349)
.++++.+.+++.... .|+....+..+...+...|++ ++|+..|+......+.+...|..+...|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356677777766543 444447899999999999999 99999999544555556788999999999999999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhc---------CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC--------CCH
Q 018924 178 EEWESQALCYDTRIPNFLIDVYCRN---------GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN--------SQI 240 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~ 240 (349)
++..+. .|+...+..+...|... |++++|...|++..+..+. +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 999985 46678888999999999 9999999999999987644 677899999999888 999
Q ss_pred HHHHHHHHHHHHHhcccccCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cc
Q 018924 241 HKAVEAMKKVLAAYQTLVKWKP----SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KS 313 (349)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~ 313 (349)
++|++.|+++++. .| +...|..+..+|...|++++|...|+++.+..+.+...+..+. .+...| ++
T Consensus 238 ~~A~~~~~~al~~-------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 238 QQALSAYAQAEKV-------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHH-------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999964 45 7888999999999999999999999999998888888888888 777776 56
Q ss_pred hHHHH
Q 018924 314 NLETL 318 (349)
Q Consensus 314 a~~~~ 318 (349)
|++.+
T Consensus 311 Ai~~~ 315 (474)
T 4abn_A 311 LLESK 315 (474)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66443
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=1e-11 Score=105.38 Aligned_cols=278 Identities=11% Similarity=-0.015 Sum_probs=195.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHhhc---CCCCC-ccHHH
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY----TYCTRLSAYADASDHEGIDKILTMMEA---DPNVA-LDWVI 86 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~ 86 (349)
.+......+...|++++|...+++........+.. +++.+...+...|++++|...+++... ..+.. ....+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445556778999999999999988764222222 456677788889999999999988652 11211 11233
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhcC------CcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc---C--Chh
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKG------AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK---V--LNN 155 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~ 155 (349)
+..+...+...|++++|...+++..+.... |....++..+...+...|++++|...++......+ + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 567888899999999999999998764321 22324677788899999999999999993222111 1 124
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc-chHH-----HHHHHHHhcCcHHHHHHHHHHHHHcCccc---chhh
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDT-RIPN-----FLIDVYCRNGLLEKAENLVNHEKLKGREI---HVKS 226 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 226 (349)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5778888899999999999999998764222221 1222 23344778999999999999887643221 1224
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
+..+...+...|++++|...++........ .+..++. ..+..+..++...|+.++|...+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 667788899999999999999998765111 1212222 35666777889999999999999887654
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=2.4e-12 Score=109.69 Aligned_cols=231 Identities=10% Similarity=0.074 Sum_probs=174.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCC----CCCc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC-----CcchhhH
Q 018924 54 RLSAYADASDHEGIDKILTMMEADP----NVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-----AKVNSAY 123 (349)
Q Consensus 54 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~ 123 (349)
....+...|++++|...+++.. .. +-.+ ...++..+...|...|++++|...+++..+.... +....++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 5566788999999999999987 32 2112 3567888999999999999999999998764322 2222578
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhc--cCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhc----CC-CCCcchH
Q 018924 124 NVILTLYGKYGKKDDVLRIWELYKKAV--KVL----NNGYRNVISSLLKLDDLESAEKIFEEWESQ----AL-CYDTRIP 192 (349)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 192 (349)
+.+...|...|++++|...++....-. .++ ..++..+...|...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 899999999999999999998222111 122 147888999999999999999999998762 22 3345678
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC----cccchhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcccccCCCCHH
Q 018924 193 NFLIDVYCRNGLLEKAENLVNHEKLKG----REIHVKSWYYLATGYRQNSQ---IHKAVEAMKKVLAAYQTLVKWKPSVE 265 (349)
Q Consensus 193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~~~ 265 (349)
..+...|.+.|++++|...+++..+.. -......+..+...+...|+ +++|+.++++.. .......
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-------~~~~~~~ 340 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-------LYADLED 340 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-------CHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-------CHHHHHH
Confidence 889999999999999999999877531 11122335678888889998 777777777652 2222455
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 266 SLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 266 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
.+..+...|...|++++|...++....
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677888999999999999999988765
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.56 E-value=3.2e-12 Score=108.70 Aligned_cols=312 Identities=12% Similarity=-0.017 Sum_probs=208.3
Q ss_pred CCCccHHHHHHHHHHH--HhcCChhHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH--HhcCChHHHH---------HH
Q 018924 8 GLARTTVVYNSMLKLY--YKTGNFEKLDSLMHEMEEN--GITYD--RYTYCTRLSAY--ADASDHEGID---------KI 70 (349)
Q Consensus 8 g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~--~~~~~~~~a~---------~~ 70 (349)
.+.|+..+=+.|-..| .+.+++++|..+++++.+. ....| ...|-.++..- ...+.++.+. ..
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 4567777777777777 8899999999999998663 22223 33444444431 1112222222 55
Q ss_pred HHHhhcCCCCCcc-HH---HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC----CcchhhHHHHHHHHhhcCCHHHHHHH
Q 018924 71 LTMMEADPNVALD-WV---IYATVGNGYGKVGLLDKALAMLKKSEEQIKG----AKVNSAYNVILTLYGKYGKKDDVLRI 142 (349)
Q Consensus 71 ~~~~~~~~~~~~~-~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (349)
++.+. ....+.+ .. .+......+...|++++|...|++..+.... +....++..+...|...|+++.|...
T Consensus 85 l~~i~-~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~ 163 (378)
T 3q15_A 85 LETIE-TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163 (378)
T ss_dssp HHHHH-GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHh-ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 66654 2111111 11 2234556678899999999999998764221 22235788999999999999999999
Q ss_pred HHHHHh--hccC-----ChhhHHHHHHHHhccCCHHHHHHHHHHHHhc----CCC-CCcchHHHHHHHHHhcCcHHHHHH
Q 018924 143 WELYKK--AVKV-----LNNGYRNVISSLLKLDDLESAEKIFEEWESQ----ALC-YDTRIPNFLIDVYCRNGLLEKAEN 210 (349)
Q Consensus 143 ~~~~~~--~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 210 (349)
++.... ...+ ...+++.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|..
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 982221 1111 2356788999999999999999999987753 111 123467788999999999999999
Q ss_pred HHHHHHH-----cCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC---hhh
Q 018924 211 LVNHEKL-----KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD---IGG 282 (349)
Q Consensus 211 ~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~---~~~ 282 (349)
.+++..+ ..+. ...++..+...|.+.|++++|..++++..+.... .+-......+..+...+...|+ +.+
T Consensus 244 ~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 244 HFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA-RSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT-TCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9998876 4333 3677888999999999999999999999875111 0111123445556666777788 777
Q ss_pred HHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 283 AENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
|...++.... .+.....+..+. .|.+.| ++|...|++..+
T Consensus 322 al~~~~~~~~-~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKKNL-HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777765221 112233556666 888888 889988887653
No 72
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.52 E-value=9.2e-12 Score=117.16 Aligned_cols=261 Identities=11% Similarity=0.053 Sum_probs=176.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
+..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.+++.... +.. ++....+.++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKA--RESYVETELI 1174 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhc--ccccccHHHH
Confidence 4666777777777778888887777553 266677777777778888888877777665 323 2222233477
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
.+|++.+++++..... + .++. ..|..+...|...|++++|..+|... ..|..+...+++.|+++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHH
Confidence 7777777776433332 1 2344 45666777788888888888888732 36777888888888888
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
.|.+.+++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..+
T Consensus 1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888877765 244677777777777788777777655422 356677899999999999999999999887
Q ss_pred HHhcccccCCC-CHHHHHHHHHHHHh--cCChhhHHHHHHHHhhCCC-----CCchhHHHHh-hhhhcC--cchH
Q 018924 252 AAYQTLVKWKP-SVESLAACLDYFKD--EGDIGGAENFIELLNDKGF-----IPTDLQDKLL-DNVQNG--KSNL 315 (349)
Q Consensus 252 ~~~~~~~~~~p-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~-~~~~~g--~~a~ 315 (349)
++.| ....|+-+...|++ .++..++.+.|..-....+ .+...|..++ .|.+.| +.|.
T Consensus 1308 -------~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1308 -------GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred -------ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4444 34556555555544 4556666666553322211 2456788899 999888 6666
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=2.1e-12 Score=117.73 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS 162 (349)
Q Consensus 83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 162 (349)
+..+|+.|...|.+.|++++|++.|++..+. .|+...+|..+..+|.+.|++++|+..|+....-.+-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455666666666677777777776666653 44444566666666666666666666666333333334455666666
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH
Q 018924 163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242 (349)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 242 (349)
++...|++++|.+.|++..+.. +-+...|+.+..+|...|++++|...|++..+..+. +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 6666666666666666665543 233455566666666666666666666666654332 34455566666666666666
Q ss_pred HHHHHHHHHH
Q 018924 243 AVEAMKKVLA 252 (349)
Q Consensus 243 a~~~~~~~~~ 252 (349)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=7.4e-12 Score=94.74 Aligned_cols=163 Identities=17% Similarity=0.094 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924 50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129 (349)
Q Consensus 50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (349)
.+..+...+...|++++|...++++. +... .+..++..+...+...|++++|.+.++++.+. .|+...++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVY-DADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTC-CTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-HhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 44555555666666666666666655 3222 34555566666666666666666666666553 23322456666666
Q ss_pred HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHH
Q 018924 130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE 209 (349)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 209 (349)
+...|++++|.+.++......+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666663333334444555555666666666666666666655543 333455555666666666666666
Q ss_pred HHHHHHHH
Q 018924 210 NLVNHEKL 217 (349)
Q Consensus 210 ~~~~~~~~ 217 (349)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=2.7e-12 Score=117.03 Aligned_cols=166 Identities=8% Similarity=-0.065 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI 126 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (349)
+..+|+.+..++.+.|++++|++.|++.. +... -+..+|+.+..+|.+.|++++|++.|++..+. .|+...+|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKAL-EVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 35689999999999999999999999988 4333 45788999999999999999999999999884 56665799999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE 206 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 206 (349)
..++...|++++|++.|+....-.+-+...|..+..++...|++++|.+.|++..+.. +-+...+..+..+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999995444455567889999999999999999999999999864 445678899999999999999
Q ss_pred HHHHHHHHHHH
Q 018924 207 KAENLVNHEKL 217 (349)
Q Consensus 207 ~a~~~~~~~~~ 217 (349)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998887
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=2.6e-12 Score=104.24 Aligned_cols=228 Identities=15% Similarity=0.055 Sum_probs=152.4
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcC------CCCCccHHHHHHH
Q 018924 24 YKTGNFEKLDSLMHEMEEN-------GITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD------PNVALDWVIYATV 90 (349)
Q Consensus 24 ~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 90 (349)
...|++++|+..|++..+. +.+....++..+..++...|++++|...+++.... .+.+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888877652 11223557888999999999999999999887622 2233456678889
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhh-----c-CCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHh---h----ccCChhh
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQI-----K-GAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKK---A----VKVLNNG 156 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~---~----~~~~~~~ 156 (349)
...|...|++++|.+.|++..+.. . .|....++..+...+...|++++|...++ .... . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999987641 1 24444688899999999999999999998 3222 1 2223457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCC-cchHHHHHHHHHhcCcH------HHHHHHHHHHHHcCccc
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQ-------ALCYD-TRIPNFLIDVYCRNGLL------EKAENLVNHEKLKGREI 222 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~ 222 (349)
+..+...+...|++++|...+++..+. ...+. ...+..+...+...+.. ..+...++..... ...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888889999999999999999888753 11222 23333333333332222 2222222222111 112
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
...++..+...|...|++++|..+|+++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888889999999988888764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=5.5e-12 Score=95.47 Aligned_cols=166 Identities=14% Similarity=0.019 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS 163 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 163 (349)
...+..+...+...|++++|.+.|+++.+. .|+...++..+...+...|++++|...++......+.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 455667888888899999999999888764 333336788888888899999999998884444445566778888888
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924 164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 243 (349)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888899999999888887764 456677778888888888999998888888876532 567788888888888888888
Q ss_pred HHHHHHHHHH
Q 018924 244 VEAMKKVLAA 253 (349)
Q Consensus 244 ~~~~~~~~~~ 253 (349)
.+.++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888888764
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.48 E-value=3.4e-12 Score=103.57 Aligned_cols=233 Identities=12% Similarity=0.073 Sum_probs=154.0
Q ss_pred hcCChHHHHHHHHHhhc------CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh------hcCCcchhhHHHHH
Q 018924 60 DASDHEGIDKILTMMEA------DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------IKGAKVNSAYNVIL 127 (349)
Q Consensus 60 ~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~ 127 (349)
..|++++|...+++... ..+.+....++..+...|...|++++|...+++..+. +..|....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44565555555554431 3333346777889999999999999999999998765 22344446899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhh--------ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc------C-CCCCcchH
Q 018924 128 TLYGKYGKKDDVLRIWELYKKA--------VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ------A-LCYDTRIP 192 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~ 192 (349)
..+...|++++|...++..... .+....++..+...+...|++++|...++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999822221 1233467888999999999999999999998764 1 12234567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC-------cccc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-C
Q 018924 193 NFLIDVYCRNGLLEKAENLVNHEKLKG-------REIH-VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-S 263 (349)
Q Consensus 193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~ 263 (349)
..+...|...|++++|...+++..+.. ..+. ...|..+...+...+....+.. +..+...........| .
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHH
Confidence 889999999999999999999887631 1122 2233333333333333222222 2222111000011223 3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 264 VESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 264 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
..++..+...|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788888999999999999999887653
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=2.3e-11 Score=103.49 Aligned_cols=233 Identities=14% Similarity=0.056 Sum_probs=141.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhc---CC-CCC-ccHHHHH
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGI-TYD----RYTYCTRLSAYADASDHEGIDKILTMMEA---DP-NVA-LDWVIYA 88 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~-~~~-~~~~~~~ 88 (349)
....+...|++++|+..|++..+... .++ ..++..+..+|...|+++.|...+++... +. +.. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888887765311 112 23667777777788888888777766541 11 111 1245566
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhhc----CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHh-----hccCChhhHHH
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQIK----GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK-----AVKVLNNGYRN 159 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 159 (349)
.+..+|...|++++|.+.|++..+... .+....++..+..+|...|++++|+..++.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 777788888888888888777665321 111224667777778888888888887773222 33333456777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCc---HHHHHHHHHHHHHcCcccchhhHHHHHH
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQALCY----DTRIPNFLIDVYCRNGL---LEKAENLVNHEKLKGREIHVKSWYYLAT 232 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~ 232 (349)
+...+.+.|++++|...+++..+..... ....+..+...|...++ +++|...++.... .......+..+..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~ 344 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHH
Confidence 7777778888888888887776532111 11234444445555666 5566665554211 1112334556777
Q ss_pred HHhcCCCHHHHHHHHHHHHHH
Q 018924 233 GYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~ 253 (349)
.|...|++++|.+.|+++.+.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 777777877777777777643
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.5e-11 Score=96.73 Aligned_cols=128 Identities=9% Similarity=-0.102 Sum_probs=58.4
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC 200 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 200 (349)
.+......+...|++++|+..|+......+ ++...+..+..++...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 344444444444444444444442222222 333333334444444444444444444444432 122334444445555
Q ss_pred hcCcHHHHHHHHHHHHHcCcccch-------hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 201 RNGLLEKAENLVNHEKLKGREIHV-------KSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 201 ~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
..|++++|...+++..+..+. +. ..|..+...+...|++++|++.|++++
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 555555555555554443221 12 234455555566666666666666665
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=1.9e-11 Score=96.18 Aligned_cols=198 Identities=7% Similarity=-0.070 Sum_probs=152.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
.|+..|......+.+.|++++|+..|++..+...+++...+..+..++...|++++|+..+++.. +.+. .+..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KKNY-NLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTC-SHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-HhCc-chHHHHHHH
Confidence 35688889999999999999999999999987654678888889999999999999999999988 4343 467788899
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcch-------hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccC--ChhhHHHHH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVN-------SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVI 161 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li 161 (349)
..+|...|++++|.+.|++..+. .|+.. .+|..+...+...|++++|+..|+......+. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 99999999999999999999885 44543 35888888999999999999999943333333 346677777
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924 162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 220 (349)
.++...| ..+++++...+ ..+...|.... ....+.+++|...|++..+..+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 7775543 44556665543 23333443333 3446778999999999998653
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=1.4e-10 Score=98.28 Aligned_cols=266 Identities=13% Similarity=0.057 Sum_probs=183.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH----HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc----hhhH
Q 018924 52 CTRLSAYADASDHEGIDKILTMMEADPNVALDW----VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV----NSAY 123 (349)
Q Consensus 52 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~ 123 (349)
......+...|++++|...+++..... ...+. .+++.+...+...|++++|.+.+++.......... ..++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344456678899999999999876232 22222 24667788899999999999999998764332222 1235
Q ss_pred HHHHHHHhhcCCHHHHHHHHH-HHHh----hcc--C-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC----Ccch
Q 018924 124 NVILTLYGKYGKKDDVLRIWE-LYKK----AVK--V-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY----DTRI 191 (349)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~-~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 191 (349)
..+...+...|++++|...++ .... +.+ | ....+..+...+...|++++|...+++..+..... ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 678888999999999999998 2221 111 2 22456678888999999999999999987643211 1245
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch-hhHH-----HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCC---C
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV-KSWY-----YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK---P 262 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---p 262 (349)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|..++++.... ... .
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~ 251 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-----EFANNHF 251 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-----CCTTCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-----CCCcchh
Confidence 677888899999999999999988754222211 1222 2334477899999999999987642 111 1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-Cc-hhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 263 SVESLAACLDYFKDEGDIGGAENFIELLNDK----GFI-PT-DLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 263 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
....+..+...+...|++++|...++..... +.+ .. ..+..+. ++...| ++|...+++...
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1335667778899999999999999887654 211 11 2444555 777777 788888877654
No 83
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=1.3e-11 Score=107.40 Aligned_cols=278 Identities=17% Similarity=0.090 Sum_probs=148.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH---EGIDKILTMMEADPNVALDWVIYATVGNGYG 95 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 95 (349)
+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|..+|++.. +. +...+..|...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~-~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAA-DT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH-hC----CHHHHHHHHHHHH
Confidence 5566677788888888888877665 233444455555556666 77777777766 32 3334445555444
Q ss_pred hcC-----cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh-----------------------------------cCC
Q 018924 96 KVG-----LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK-----------------------------------YGK 135 (349)
Q Consensus 96 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------------~~~ 135 (349)
..| +.++|.+.|++..+.|.. .++..|...|.. .+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~----~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG----NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS----SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 444 667777777776653321 233344444433 232
Q ss_pred HHHHHHHHH-HHHhhccCChhhHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc----CcHHH
Q 018924 136 KDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLD---DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN----GLLEK 207 (349)
Q Consensus 136 ~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 207 (349)
++.+..... ........++..+..+...|...| +.++|.+.|+...+.| .++...+..|...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 222222211 111111233346677777777777 7778888888877766 44444445566666544 57788
Q ss_pred HHHHHHHHHHcCcccchhhHHHHHHH-H--hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC-----C
Q 018924 208 AENLVNHEKLKGREIHVKSWYYLATG-Y--RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG-----D 279 (349)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~ 279 (349)
|..+|++.. .| ++..+..+... + ...+++++|.++|++..+. + +...+..|...|. .| +
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHH-cCCCCCCC
Confidence 888888776 32 44555556555 3 4577888888888887764 4 4555555555554 44 7
Q ss_pred hhhHHHHHHHHhhCCCCCchhHHHHh-hhhhc-----C-cchHHHHHHHHhCC
Q 018924 280 IGGAENFIELLNDKGFIPTDLQDKLL-DNVQN-----G-KSNLETLRELYGNS 325 (349)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~-----g-~~a~~~~~~m~~~~ 325 (349)
+++|...|++.. +.+...+..+. .|... . ++|...|++..+.|
T Consensus 303 ~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 303 AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 777777777766 33445555555 55441 1 56777777766654
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.39 E-value=6.3e-11 Score=96.93 Aligned_cols=206 Identities=8% Similarity=-0.043 Sum_probs=131.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc---CCCCCc-cHHHHHHHHHHHhhcCcHHHHH
Q 018924 29 FEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA---DPNVAL-DWVIYATVGNGYGKVGLLDKAL 104 (349)
Q Consensus 29 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~-~~~~~~~li~~~~~~g~~~~a~ 104 (349)
+++|...|++. ...|...|++++|...|++... +.+-++ ...+|+.+..+|.+.|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 4456677888888887776541 112212 2467778888888888888888
Q ss_pred HHHHHHHHhhcCCc----chhhHHHHHHHHhhc-CCHHHHHHHHHHHHhhccC--C----hhhHHHHHHHHhccCCHHHH
Q 018924 105 AMLKKSEEQIKGAK----VNSAYNVILTLYGKY-GKKDDVLRIWELYKKAVKV--L----NNGYRNVISSLLKLDDLESA 173 (349)
Q Consensus 105 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~--~----~~~~~~li~~~~~~~~~~~a 173 (349)
..|++..+...... ...+++.+...|... |++++|+..|+....-.+. + ..++..+...+...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 88887765432211 124677788888885 8888888888822221111 1 24577778888888888888
Q ss_pred HHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch------hhHHHHHHHHh--cCCC
Q 018924 174 EKIFEEWESQALCYDTR------IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV------KSWYYLATGYR--QNSQ 239 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~~~ 239 (349)
...|++..+........ .+..+..++...|++++|...|++..+.. |+. ..+..++.+|. ..++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 88888887754322221 35667777888888888888888776532 221 12344555554 4566
Q ss_pred HHHHHHHHHHHH
Q 018924 240 IHKAVEAMKKVL 251 (349)
Q Consensus 240 ~~~a~~~~~~~~ 251 (349)
+++|+..|+.+.
T Consensus 256 ~~~A~~~~~~~~ 267 (292)
T 1qqe_A 256 LSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHhccCC
Confidence 777777776654
No 85
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=2.2e-10 Score=99.59 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhcC---cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc----CCHHHHHHHHHHHHhhccCChhhHH
Q 018924 86 IYATVGNGYGKVG---LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY----GKKDDVLRIWELYKKAVKVLNNGYR 158 (349)
Q Consensus 86 ~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (349)
.+..|...|.+.| +.++|++.|++..+.|. ++. ..+..|...|... +++++|+..|+... +-+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a-~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTA-QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCH-HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence 4444555555555 55555555555554432 111 2334444444333 45555555555221 23333444
Q ss_pred HHHHH-H--hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-----cHHHHHHHHHHHHHcCcccchhhHHHH
Q 018924 159 NVISS-L--LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG-----LLEKAENLVNHEKLKGREIHVKSWYYL 230 (349)
Q Consensus 159 ~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 230 (349)
.+... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|..+|++.. .| ++..+..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 44443 2 34555555555555555443 3334444444444 33 5555555555544 22 33444444
Q ss_pred HHHHhc----CCCHHHHHHHHHHHHH
Q 018924 231 ATGYRQ----NSQIHKAVEAMKKVLA 252 (349)
Q Consensus 231 i~~~~~----~~~~~~a~~~~~~~~~ 252 (349)
...|.. ..++++|..+|++..+
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 444443 2255555555555543
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=3.5e-11 Score=98.44 Aligned_cols=235 Identities=11% Similarity=-0.015 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C-ChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 018924 30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADA--S-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM 106 (349)
Q Consensus 30 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 106 (349)
.+|.+++.+..+. .+++...| .++ +. + ++++|...|++. ...|...|++++|...
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~ 59 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA----------------ATIYRLRKELNLAGDS 59 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH----------------HHHHHHTTCTHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH----------------HHHHHHcCCHHHHHHH
Confidence 3567777777665 33222223 222 32 2 478888887766 3457789999999999
Q ss_pred HHHHHHhhc----CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc--CC----hhhHHHHHHHHhcc-CCHHHHHH
Q 018924 107 LKKSEEQIK----GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VL----NNGYRNVISSLLKL-DDLESAEK 175 (349)
Q Consensus 107 ~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~-~~~~~a~~ 175 (349)
|++..+... .+....+|+.+..+|...|++++|+..|+....-.+ .+ ..++..+...|... |++++|..
T Consensus 60 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~ 139 (292)
T 1qqe_A 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID 139 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 998866421 122236899999999999999999999982221111 11 34688888999986 99999999
Q ss_pred HHHHHHhcCCCC-C----cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchh------hHHHHHHHHhcCCCHHHHH
Q 018924 176 IFEEWESQALCY-D----TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK------SWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 176 ~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~ 244 (349)
.|++..+..... + ..+++.+...|.+.|++++|...|++..+..+..... .|..+..++...|++++|.
T Consensus 140 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987642111 1 3467888999999999999999999998855432221 5677788889999999999
Q ss_pred HHHHHHHHHhcccccCCCCHH------HHHHHHHHHH--hcCChhhHHHHHHHHhhC
Q 018924 245 EAMKKVLAAYQTLVKWKPSVE------SLAACLDYFK--DEGDIGGAENFIELLNDK 293 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 293 (349)
..|++.+ .+.|+.. .+..++.++. ..+++++|...|+.+...
T Consensus 220 ~~~~~al-------~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 220 RTLQEGQ-------SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHGGG-------CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHH-------hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 9999987 4455422 3444555553 345566676666555443
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=1.1e-09 Score=88.25 Aligned_cols=254 Identities=13% Similarity=0.007 Sum_probs=160.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL 99 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 99 (349)
|+-..-.|.+..++.- ..+.........-.-+.+++...|+++.. ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~----------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ----------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC----------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC----------CCCCHHHHHHHHHHHHh-ccc-
Confidence 3455567888888873 33222121223334456778888876631 12224544544444443 322
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc--CChhhHHHHHHHHhccCCHHHHHHHH
Q 018924 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNNGYRNVISSLLKLDDLESAEKIF 177 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 177 (349)
|+..|++..+.+ .++. .++..+..++...|++++|++++.......+ -+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ---a~~~l~~l~~~~-~~~~-~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSP-YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCc-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677787776543 2333 5667888889999999999999983322221 34456778888999999999999999
Q ss_pred HHHHhcCCCC-----CcchHHHHHHHH--Hh--cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924 178 EEWESQALCY-----DTRIPNFLIDVY--CR--NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248 (349)
Q Consensus 178 ~~~~~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 248 (349)
++|.+. .| +..+...|..++ .. .+++++|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 999774 45 234444555552 22 338999999999987654 442233344447888999999999998
Q ss_pred HHHHHhcccc---cCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924 249 KVLAAYQTLV---KWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299 (349)
Q Consensus 249 ~~~~~~~~~~---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (349)
.+.+.++... +..| |+.++..+|......|+ +|.++++++....|.++.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 7664311000 0024 56667677766667786 888999999888765543
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=2.6e-10 Score=88.22 Aligned_cols=167 Identities=13% Similarity=0.053 Sum_probs=97.2
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHH----------------HHHHHhhcCCHHHHHHHHHHHHhhccCC
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV----------------ILTLYGKYGKKDDVLRIWELYKKAVKVL 153 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (349)
....+...|++++|+..|++..+. .|+...+|.. +..++...|++++|+..|+......+.+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 344455556666666666655543 2332234444 7777777777777777777444444455
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc--HHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924 154 NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL--LEKAENLVNHEKLKGREIHVKSWYYLA 231 (349)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li 231 (349)
...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|+ .+.+...++.... +.|....+....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 6667777777777777777777777777653 3345566666666655443 3344444544432 222222333445
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHH
Q 018924 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA 268 (349)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 268 (349)
.++...|++++|...|++++ .+.|+.....
T Consensus 165 ~~~~~~~~~~~A~~~~~~al-------~l~P~~~~~~ 194 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVI-------LRFPSTEAQK 194 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHT-------TTSCCHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH-------HhCCCHHHHH
Confidence 55556677788888888777 5567654433
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=3.5e-10 Score=90.82 Aligned_cols=188 Identities=9% Similarity=-0.117 Sum_probs=105.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-CCCccHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD---RYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIY 87 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 87 (349)
+...+-.+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|++..... +-+....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555566666677777777777777777665321 2 4466666667777777777777777765211 111224455
Q ss_pred HHHHHHHhh--------cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHH
Q 018924 88 ATVGNGYGK--------VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN 159 (349)
Q Consensus 88 ~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (349)
..+..++.. .|++++|...|+++.+. .|+.......+....... ..+ ...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~-------~~~----------~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELR-------AKL----------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHH-------HHH----------HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHH-------HHH----------HHHHHH
Confidence 566666666 77777777777777664 233312322221110000 000 011345
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhc----------CcHHHHHHHHHHHHHcC
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQALCY--DTRIPNFLIDVYCRN----------GLLEKAENLVNHEKLKG 219 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 219 (349)
+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 5666777777777777777776643111 123455566666654 67777777777777643
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=3.5e-10 Score=90.84 Aligned_cols=187 Identities=11% Similarity=-0.021 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc---HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC-Ccchhh
Q 018924 47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD---WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKVNSA 122 (349)
Q Consensus 47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 122 (349)
+...+..+...+.+.|++++|...|+++. +... .+ ...+..+..+|.+.|++++|...|++..+..+. +....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 44566666667777788888888877776 3221 12 556667777777778888888877777765331 122245
Q ss_pred HHHHHHHHhh--------cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 018924 123 YNVILTLYGK--------YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF 194 (349)
Q Consensus 123 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (349)
+..+..++.. .|++++|+..|+......+.+......+.. +..+... -...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 6666667766 777777777777333333322222222111 0000000 0011455
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCccc--chhhHHHHHHHHhcC----------CCHHHHHHHHHHHHHH
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKLKGREI--HVKSWYYLATGYRQN----------SQIHKAVEAMKKVLAA 253 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~ 253 (349)
+...|.+.|++++|...|+.+.+..+.. ....+..+..+|... |++++|...|+++++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 7778888999999999999888754321 234566777777755 8889999999998865
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=9.1e-10 Score=88.81 Aligned_cols=248 Identities=10% Similarity=-0.002 Sum_probs=168.4
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924 55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (349)
++-..-.|++..++.-...+. ...++ ..-.-+.++|...|+++... ...|.. .++..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~-~~~~~~~Rs~iAlg~~~~~~---------~~~~~~-~a~~~la~-~~~~~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDN-TLLFYKAKTLLALGQYQSQD---------PTSKLG-KVLDLYVQ-FLDTK 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCH-HHHHHHHHHHHHTTCCCCCC---------SSSTTH-HHHHHHHH-HHTTT
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchH-HHHHHHHHHHHHcCCCccCC---------CCCHHH-HHHHHHHH-Hhccc
Confidence 344556799998887444333 22233 23334568888888776421 112222 24333333 33322
Q ss_pred CHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924 135 KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL-CYDTRIPNFLIDVYCRNGLLEKAENLVN 213 (349)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 213 (349)
|+..|+......+++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+++.|.+.++
T Consensus 85 ----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67777732222245666667888999999999999999999877653 2356677889999999999999999999
Q ss_pred HHHHcCccc-----chhhHHHHHHH--Hhc--CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHH
Q 018924 214 HEKLKGREI-----HVKSWYYLATG--YRQ--NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284 (349)
Q Consensus 214 ~~~~~~~~~-----~~~~~~~li~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 284 (349)
+|.+.. | +..+...++.+ ... .+++.+|..+|+++.+ ..|+..+...++.++.+.|++++|+
T Consensus 161 ~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~-------~~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 161 NYTNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ-------TFPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT-------TSCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-------hCCCcccHHHHHHHHHHcCCHHHHH
Confidence 998853 5 34555556655 232 3489999999999874 3676445455666899999999999
Q ss_pred HHHHHHhhC----------CCCCchhHHHHh-hhhhcCcchHHHHHHHHhCCCCCCccc
Q 018924 285 NFIELLNDK----------GFIPTDLQDKLL-DNVQNGKSNLETLRELYGNSLAGNEET 332 (349)
Q Consensus 285 ~~~~~~~~~----------~~~~~~~~~~l~-~~~~~g~~a~~~~~~m~~~~~~p~~~t 332 (349)
..++.+.+. .+.++.+...++ .....|++|.+++.++.+. .|+...
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHh--CCCChH
Confidence 999977654 355677776666 5555677899999999885 566543
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=5.6e-10 Score=79.39 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 333344444444444444444444332211 23333444444444444444444444443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=6e-10 Score=79.23 Aligned_cols=129 Identities=17% Similarity=0.170 Sum_probs=75.8
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK 166 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (349)
|..+...+...|++++|..+++++.+.. |+...++..+...+...|++++|...++......+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4455566666666666666666665532 22224556666666666666666666663223333344555666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666666666666666543 334455666666666677777777776666553
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=3.5e-10 Score=87.56 Aligned_cols=96 Identities=11% Similarity=-0.034 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHHhcCChHHHHHHHHHhh
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD-RYTYCT----------------RLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
+..+-.....+.+.|++++|+..|++..+.. |+ ...|.. +..++.+.|++++|...|++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455566778899999999998888753 33 334443 4444444444444444444443
Q ss_pred cCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 76 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
+.+. -+...+..+..++...|++++|...|++..+
T Consensus 82 -~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 82 -QKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp -HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2111 2333444444444444444444444444443
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=5.6e-09 Score=81.78 Aligned_cols=209 Identities=11% Similarity=-0.006 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-hhhHHH
Q 018924 48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSAYNV 125 (349)
Q Consensus 48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 125 (349)
...+..+...+...|++++|...|+++.....-.| ....+..+..+|.+.|++++|+..|+++.+..+.... ..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455556667777777777777777662211112 2345666777777777777777777777764332211 013444
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCc
Q 018924 126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT-RIPNFLIDVYCRNGL 204 (349)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 204 (349)
+..++...+.. .+ ..|..+...+...|++++|...|+++.+.. |+. ..+......
T Consensus 84 ~g~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l------ 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL-----------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL------ 139 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH------
T ss_pred HHHHHHhhhhh-----hh-----------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH------
Confidence 44444332211 00 112223334455778888888888887753 333 222221110
Q ss_pred HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC----HHHHHHHHHHHHhcCCh
Q 018924 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS----VESLAACLDYFKDEGDI 280 (349)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~ 280 (349)
..+...+. .....+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|+.
T Consensus 140 ----~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 140 ----VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD-------YPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp ----HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTSHHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH-------CcCCCccHHHHHHHHHHHHHcCCc
Confidence 00111111 11234567788899999999999999865 443 25677888899999999
Q ss_pred hhHHHHHHHHhhCCCCCch
Q 018924 281 GGAENFIELLNDKGFIPTD 299 (349)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~ 299 (349)
++|.+.++.+...++.+..
T Consensus 201 ~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 201 AQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHhhCCCchh
Confidence 9999999988887765543
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=9.1e-10 Score=100.71 Aligned_cols=176 Identities=10% Similarity=-0.111 Sum_probs=137.1
Q ss_pred HhcCChHHHHHHHHHhhc-----C-CCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924 59 ADASDHEGIDKILTMMEA-----D-PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132 (349)
Q Consensus 59 ~~~~~~~~a~~~~~~~~~-----~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (349)
...|++++|++.+++... . ...+.+...+..+...+...|++++|++.|++..+. .|+...+|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 678899999999988751 0 122345677888889999999999999999999875 34444789999999999
Q ss_pred cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHH
Q 018924 133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV 212 (349)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 212 (349)
.|++++|+..|+......+.+...+..+..++.+.|++++ ...|++..+.+ +.+...|..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999995555555567788899999999999999 99999988864 445678888999999999999999999
Q ss_pred HHHHHcCcccchhhHHHHHHHHhcCCC
Q 018924 213 NHEKLKGREIHVKSWYYLATGYRQNSQ 239 (349)
Q Consensus 213 ~~~~~~~~~~~~~~~~~li~~~~~~~~ 239 (349)
++..+.++. +...+..+..++...++
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 988875432 45667777777777665
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=8.9e-10 Score=100.76 Aligned_cols=173 Identities=11% Similarity=-0.058 Sum_probs=143.7
Q ss_pred hhcCcHHHHHHHHHHHH--------HhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924 95 GKVGLLDKALAMLKKSE--------EQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK 166 (349)
Q Consensus 95 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (349)
...|++++|++.+++.. + ..|+....+..+..++...|++++|+..|+......+.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 78899999999999987 4 3455547899999999999999999999995555556677889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924 167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA 246 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 246 (349)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ ...|++..+.++. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999864 4467788999999999999999 9999999987654 677899999999999999999999
Q ss_pred HHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCC
Q 018924 247 MKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGD 279 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 279 (349)
|+++. .+.|+ ...+..+..++...++
T Consensus 557 ~~~al-------~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVP-------PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSC-------TTSTTHHHHHHHHHHHTC----
T ss_pred HHhhc-------ccCcccHHHHHHHHHHHHccCC
Confidence 99987 55775 4566667777666554
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.20 E-value=1.3e-10 Score=84.90 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=22.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
+...|.+.|++++|...|++..+..+. +..+|..+...|...|++++|+..|++++
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 333344444444444444443333221 23333334444444444444444444443
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=1.5e-08 Score=79.32 Aligned_cols=188 Identities=9% Similarity=-0.047 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc-HHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGIT-Y-DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD-WVIYA 88 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 88 (349)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.....-.+. ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778899999999999999999986432 1 1357888899999999999999999998722211122 12444
Q ss_pred HHHHHHhh------------------cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 018924 89 TVGNGYGK------------------VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV 150 (349)
Q Consensus 89 ~li~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (349)
.+..++.. .|++++|...|+++.+. .|+...++....... .+.....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHHH---
Confidence 45555543 57899999999998875 455433443322110 0011000
Q ss_pred cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT----RIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220 (349)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 220 (349)
.....+...+.+.|++++|...|+.+.+.. |+. ..+..+..+|.+.|++++|...++.+...++
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 012345677888899999999999988753 332 4577788899999999999999998887653
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=3.2e-10 Score=82.78 Aligned_cols=143 Identities=8% Similarity=-0.038 Sum_probs=73.5
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
..+...|++++|+..++..... .|+.+..+..+...|...|++++|++.|+......+-+..+|..+..++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 3444555566666666555442 22222345556666666666666666666333333444555666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHH-HHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL-VNHEKLKGREIHVKSWYYLATGYRQNS 238 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~ 238 (349)
+|...|++..+.. +.+...+..+...|.+.|++++|.+. +++..+..+. ++..|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666665543 23345555566666666665544433 3555553322 3444444444444443
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=1.7e-09 Score=97.07 Aligned_cols=153 Identities=10% Similarity=-0.075 Sum_probs=116.1
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHH
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI 176 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 176 (349)
.|++++|.+.|++..+. .|+...+|..+...+...|++++|...|+......+.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998874 4554478999999999999999999999955555556678899999999999999999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Q 018924 177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN---SQIHKAVEAMKKVLAA 253 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 253 (349)
+++..+.. +.+...+..+..+|.+.|++++|...|++..+.... +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998864 445778889999999999999999999999986543 567888899999999 9999999999999975
No 102
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=1.6e-07 Score=84.97 Aligned_cols=213 Identities=9% Similarity=0.005 Sum_probs=149.3
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH-HHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018924 104 LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182 (349)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 182 (349)
..+|++.... .|..+..|...+..+...|+.++|. ++|+.....++.+...|...+...-+.|+++.|.++|+.+.+
T Consensus 329 ~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555443 2223256667777777788888886 999854555666666677788888889999999999999876
Q ss_pred cC---------CCCC------------cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc-CCCH
Q 018924 183 QA---------LCYD------------TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ-NSQI 240 (349)
Q Consensus 183 ~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~ 240 (349)
.. -.|+ ..+|...+....+.|..+.|..+|.+..+.-..+....|...+..-.+ .++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 31 0132 235777788888889999999999999875111123333332222233 3458
Q ss_pred HHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC---CchhHHHHh-hhhhcC--cch
Q 018924 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI---PTDLQDKLL-DNVQNG--KSN 314 (349)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~-~~~~~g--~~a 314 (349)
+.|..+|+..++. ..-+...+...++.....|+.+.|+.+|++.....++ ....|...+ .-.+.| +.+
T Consensus 487 e~Ar~ife~~Lk~------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 487 KTACKVLELGLKY------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp HHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHHHHHHH------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999874 2235566677888888899999999999999887653 334677777 666778 788
Q ss_pred HHHHHHHHhC
Q 018924 315 LETLRELYGN 324 (349)
Q Consensus 315 ~~~~~~m~~~ 324 (349)
..+.+++.+.
T Consensus 561 ~~v~~R~~~~ 570 (679)
T 4e6h_A 561 RTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=3.3e-09 Score=95.22 Aligned_cols=154 Identities=8% Similarity=-0.076 Sum_probs=112.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHH
Q 018924 26 TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA 105 (349)
Q Consensus 26 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 105 (349)
.|++++|++.|++..+... -+...|..+...+...|++++|.+.+++.. +... .+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGL-ALHP-GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788999999999877632 256788889999999999999999999988 5443 457788889999999999999999
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc---CCHHHHHHHHHHHHh
Q 018924 106 MLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL---DDLESAEKIFEEWES 182 (349)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~ 182 (349)
.|++..+. .|+...++..+..++...|++++|.+.|+......+.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999875 4554478999999999999999999999954444555667888889999999 999999999999887
Q ss_pred cC
Q 018924 183 QA 184 (349)
Q Consensus 183 ~~ 184 (349)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.13 E-value=8.6e-10 Score=82.86 Aligned_cols=160 Identities=9% Similarity=-0.112 Sum_probs=89.5
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH-Hhcc
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS-LLKL 167 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 167 (349)
.+...+...|++++|...|++..+. .|+...++..+...+...|++++|+..++.... ..|+...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPL-EYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-GGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-ccCChHHHHHHHHHHHHhh
Confidence 4555566666666666666665553 233335666666666666666666666662111 11232222211111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc-chhhHHHHHHHHhcCCCHHHHHHH
Q 018924 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI-HVKSWYYLATGYRQNSQIHKAVEA 246 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 246 (349)
+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 22233566666666543 3345666667777777777777777777776654332 244566677777777777777777
Q ss_pred HHHHHH
Q 018924 247 MKKVLA 252 (349)
Q Consensus 247 ~~~~~~ 252 (349)
|++.+.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=2.4e-09 Score=87.23 Aligned_cols=164 Identities=9% Similarity=-0.067 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhH-HHHHH
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY-RNVIS 162 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~li~ 162 (349)
...+..+...+...|++++|...|++..+. .|+...++..+...+...|++++|...++... ...|+.... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP-LQDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-GGGCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc-hhhcchHHHHHHHHH
Confidence 334444555555566666666666655553 33333455555556666666666665555111 112222211 11122
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc-chhhHHHHHHHHhcCCCHH
Q 018924 163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI-HVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~ 241 (349)
.+...++.+.|...+++..... +.+...+..+...|...|++++|...|.++.+..+.. +...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 2334445555555555555442 3344455555555555566666666555555543221 1344555555555555555
Q ss_pred HHHHHHHHHH
Q 018924 242 KAVEAMKKVL 251 (349)
Q Consensus 242 ~a~~~~~~~~ 251 (349)
+|...|++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 5555555544
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.13 E-value=1.5e-09 Score=81.59 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=113.8
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH-H
Q 018924 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV-Y 199 (349)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 199 (349)
..+..+...+...|++++|...|+......+.+...+..+...+...|++++|...++.+.+.. |+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3566777888889999999999883333344556778888888889999999999998876643 344333222211 1
Q ss_pred HhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC---HHHHHHHHHHHHh
Q 018924 200 CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS---VESLAACLDYFKD 276 (349)
Q Consensus 200 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~ 276 (349)
...+....|...+++..+..+. +...+..+...+...|++++|...|+++++ ..|+ ...+..+...+..
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILK-------VNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTTTTTHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hCcccChHHHHHHHHHHHHH
Confidence 2222334467788887775543 567788888888888999999988888884 3543 4577788888888
Q ss_pred cCChhhHHHHHHHHh
Q 018924 277 EGDIGGAENFIELLN 291 (349)
Q Consensus 277 ~g~~~~a~~~~~~~~ 291 (349)
.|+.++|...|++..
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 888888888887654
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=5.3e-09 Score=86.09 Aligned_cols=232 Identities=9% Similarity=0.006 Sum_probs=150.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHH
Q 018924 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL 104 (349)
Q Consensus 25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 104 (349)
..|++++|.+++++..+... .. + +...++++.|...|++. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 35778888888888765421 11 0 11146677777766654 34677888999998
Q ss_pred HHHHHHHHhhcCC----cchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh---c-cC--ChhhHHHHHHHHhccCCHHHHH
Q 018924 105 AMLKKSEEQIKGA----KVNSAYNVILTLYGKYGKKDDVLRIWELYKKA---V-KV--LNNGYRNVISSLLKLDDLESAE 174 (349)
Q Consensus 105 ~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~--~~~~~~~li~~~~~~~~~~~a~ 174 (349)
..|.+..+..... ....+|+.+...|...|++++|+..|+....- . .+ -..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 8888876542211 12247888888899999999999988821111 1 11 12467778888888 9999999
Q ss_pred HHHHHHHhcCCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc----ccc-hhhHHHHHHHHhcCCCHHHHH
Q 018924 175 KIFEEWESQALCY-----DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR----EIH-VKSWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 175 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~~~~~~a~ 244 (349)
..|++..+..... ...+++.+...|.+.|++++|...|++...... .+. ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998877532111 135677888889999999999999998876321 111 225666777788889999999
Q ss_pred HHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 018924 245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 286 (349)
..|++.+ ..+. ............++.++ ..|+.+.+..+
T Consensus 216 ~~~~~al-~~p~-~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPG-FSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTT-STTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCC-CCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999987 4110 00011123344555555 56777666653
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.12 E-value=2.7e-09 Score=86.95 Aligned_cols=169 Identities=8% Similarity=-0.097 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHH
Q 018924 45 TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN 124 (349)
Q Consensus 45 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (349)
+.+...+..+...+...|++++|...|++.. .... -+...+..+...+.+.|++++|...++++.... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAW-QLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH-HhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHH
Confidence 3345567777778888888888888888876 3333 355677778888888888888888888876643 34423333
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcC
Q 018924 125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNG 203 (349)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 203 (349)
.....+...++.++|...++......+.+...+..+...+...|++++|...+..+.+..... +...+..++..+...|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 344446677778888888875555556667778888888888888888888888888754221 2556788888888888
Q ss_pred cHHHHHHHHHHHHH
Q 018924 204 LLEKAENLVNHEKL 217 (349)
Q Consensus 204 ~~~~a~~~~~~~~~ 217 (349)
+.++|...|++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888876553
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=1.4e-07 Score=76.78 Aligned_cols=230 Identities=10% Similarity=-0.006 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH----hhc---CC
Q 018924 65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVG--LLDKALAMLKKSEEQIKGAKVNSAYNVILTLY----GKY---GK 135 (349)
Q Consensus 65 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 135 (349)
++|+.+++.+. ..+. -+..+|+.--.++...| +++++++.++.+.... |....+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L-~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGI-NELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHH-HHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCC
Confidence 56777777666 3332 34455666666666666 7777777777776643 33324665544444 334 56
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH--HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc------HHH
Q 018924 136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE--SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL------LEK 207 (349)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 207 (349)
+++++.+++......+-+..+|+.-.-.+.+.|.++ ++.+.++.+.+.. +-|...|+--...+.+.++ +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 667777666444444555566666655556666666 6667777766654 3455555555555555554 666
Q ss_pred HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH-HHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 018924 208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK-AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF 286 (349)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 286 (349)
+.+.++.+....+. |...|+.+-..+.+.|+... +.++..+..... ..-..+...+..+...|.+.|+.++|.++
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 66666666666554 66667766666666666433 334444443210 00122455666666666666777777777
Q ss_pred HHHHhh-CCCCCchhHHH
Q 018924 287 IELLND-KGFIPTDLQDK 303 (349)
Q Consensus 287 ~~~~~~-~~~~~~~~~~~ 303 (349)
++.+.+ .+|.....|+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHTTCGGGHHHHHH
T ss_pred HHHHHhccChHHHHHHHH
Confidence 776665 34444444443
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=9.7e-09 Score=84.50 Aligned_cols=188 Identities=9% Similarity=-0.000 Sum_probs=110.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhc---CCCC-CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC----cchhhHHHH
Q 018924 55 LSAYADASDHEGIDKILTMMEA---DPNV-ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA----KVNSAYNVI 126 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l 126 (349)
...|...|++++|...|.+... +.+- .....+|+.+..+|.+.|++++|+..|++..+..... ....+++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456667777777777766531 1111 1123466777777778888888888777765532111 112466777
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccC------ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCC----CCC-cchHHHH
Q 018924 127 LTLYGKYGKKDDVLRIWELYKKAVKV------LNNGYRNVISSLLKLDDLESAEKIFEEWESQAL----CYD-TRIPNFL 195 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l 195 (349)
...|.. |++++|+..|+....-.+. ...++..+...+...|++++|...|++..+... .+. ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 777777 8888888888722211111 134567777788888888888888887765311 111 1245556
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCccc-c---hhhHHHHHHHHhcCCCHHHHHH
Q 018924 196 IDVYCRNGLLEKAENLVNHEKLKGREI-H---VKSWYYLATGYRQNSQIHKAVE 245 (349)
Q Consensus 196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~~a~~ 245 (349)
..++...|++++|...|++.. ..+.. + ......++.++ ..|+.+.+.+
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 666777788888888888777 43211 1 11234444444 4566555544
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=1.6e-07 Score=76.57 Aligned_cols=168 Identities=15% Similarity=0.053 Sum_probs=119.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhcc--CCh----hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHH
Q 018924 125 VILTLYGKYGKKDDVLRIWELYKKAVK--VLN----NGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPN 193 (349)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 193 (349)
..+..+...|++++|...++......+ |+. ..+..+...+...+++++|...+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888899999888883333222 221 12335667777888999999999998874322 22 12588
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHc-----Cccc-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH
Q 018924 194 FLIDVYCRNGLLEKAENLVNHEKLK-----GREI-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL 267 (349)
Q Consensus 194 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 267 (349)
.+...|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|..++++.++..........-...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999988741 1112 234788899999999999999999999886522111112226788
Q ss_pred HHHHHHHHhcCC-hhhHHHHHHHHhh
Q 018924 268 AACLDYFKDEGD-IGGAENFIELLND 292 (349)
Q Consensus 268 ~~ll~~~~~~g~-~~~a~~~~~~~~~ 292 (349)
..+..++.+.|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888889999995 6999998887764
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=1.1e-07 Score=77.41 Aligned_cols=223 Identities=9% Similarity=-0.035 Sum_probs=159.6
Q ss_pred HhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHhhcCCCCCccHHHHHHHHHHH----hh
Q 018924 24 YKTGN-FEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS--DHEGIDKILTMMEADPNVALDWVIYATVGNGY----GK 96 (349)
Q Consensus 24 ~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~ 96 (349)
.+.|. .++|+.+++.++..+.. +...|+.--.++...+ ++++++++++.+. ..+. -+..+|+.-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L-~~nP-k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIA-LDNE-KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-HHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHH-HHCc-ccHHHHHHHHHHHHHHHHh
Confidence 34444 46899999988886533 4557787777787888 8999999998887 4343 3445555443333 44
Q ss_pred c---CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH--HHHHHHHHHHhhccCChhhHHHHHHHHhccCC--
Q 018924 97 V---GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD--DVLRIWELYKKAVKVLNNGYRNVISSLLKLDD-- 169 (349)
Q Consensus 97 ~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-- 169 (349)
. +++++++++++++.+. .|....+|+--.-.+...|.++ ++++.++......+-+...|+.......+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 4 7888999999888875 3444478888888888888887 88888884445555666777777777777776
Q ss_pred ----HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH-HHHHHHHHHHHcC--cccchhhHHHHHHHHhcCCCHHH
Q 018924 170 ----LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE-KAENLVNHEKLKG--REIHVKSWYYLATGYRQNSQIHK 242 (349)
Q Consensus 170 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~ 242 (349)
++++.+.++.+.... +-|...|+-+-..+.+.|+.. .+..+..++.+.+ -..++..+..+...|.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 788888888888765 557778887777787777743 3555666665533 12366778888888888899999
Q ss_pred HHHHHHHHHH
Q 018924 243 AVEAMKKVLA 252 (349)
Q Consensus 243 a~~~~~~~~~ 252 (349)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=6e-08 Score=75.09 Aligned_cols=174 Identities=13% Similarity=0.010 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC----cHHHHHHH
Q 018924 31 KLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG----LLDKALAM 106 (349)
Q Consensus 31 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~ 106 (349)
+|++.|++..+.| +...+..+...|...+++++|..+|++.. +.+ +...+..|...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAA-AQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4556666666553 55666666666666777777777777665 333 33445556666665 5 67777777
Q ss_pred HHHHHHhhcCCcchhhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCC---hhhHHHHHHHHhc----cCCHHHHHH
Q 018924 107 LKKSEEQIKGAKVNSAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVL---NNGYRNVISSLLK----LDDLESAEK 175 (349)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~----~~~~~~a~~ 175 (349)
|++..+.+ +. .++..|...|.. .+++++|+.+|+..... .++ ...+..+...|.. .+++++|..
T Consensus 76 ~~~A~~~g---~~-~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 76 AEKAVEAG---SK-SGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHTT---CH-HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHCC---CH-HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 77665432 22 456666666665 56666666666622221 121 4455566666655 556666666
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhc-C-----cHHHHHHHHHHHHHcC
Q 018924 176 IFEEWESQALCYDTRIPNFLIDVYCRN-G-----LLEKAENLVNHEKLKG 219 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 219 (349)
.|++..+. ..+...+..|...|... | ++++|..+|+...+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666554 12333455555555442 2 5666666666666554
No 114
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.05 E-value=1e-07 Score=86.16 Aligned_cols=250 Identities=9% Similarity=0.067 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHhhcCCCCCccHH
Q 018924 14 VVYNSMLKLYYKTG-------NFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID-KILTMMEADPNVALDWV 85 (349)
Q Consensus 14 ~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 85 (349)
..|...+..--..+ ..+.+..+|++..... +-+...|...+..+...|+.++|. ++|++.. . .++.+..
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi-~-~~P~s~~ 379 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ-Q-CIPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH-H-HCTTCHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-H-hCCCCHH
Confidence 56777766544433 1244667898888763 447788888888888899999996 9999987 4 3335666
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhc---------CCc-----------chhhHHHHHHHHhhcCCHHHHHHHHHH
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIK---------GAK-----------VNSAYNVILTLYGKYGKKDDVLRIWEL 145 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (349)
.|...+...-+.|++++|.++|+++.+... .|+ ...+|...+....+.|+.+.|..+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777888889999999999999999986421 131 224788888888889999999999993
Q ss_pred HHhh-ccCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc-
Q 018924 146 YKKA-VKVLNNGYRNVISSLLKL-DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI- 222 (349)
Q Consensus 146 ~~~~-~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 222 (349)
.... .......|...+..-.+. ++.+.|.++|+...+. .+.+...+...+......|+.+.|..+|++.......+
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 3332 222334444333333344 4589999999998886 45566777788888888999999999999998865421
Q ss_pred -chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHH
Q 018924 223 -HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF 274 (349)
Q Consensus 223 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 274 (349)
....|...+..-.+.|+.+.+..+.+++.+. .|+......+++-|
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-------~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-------FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-------STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCcHHHHHHHHh
Confidence 3457888888888899999999999999976 56555555555544
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.03 E-value=9.2e-08 Score=78.06 Aligned_cols=164 Identities=9% Similarity=-0.094 Sum_probs=85.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcc----hhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhcc-CCh----hhHHH
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKV----NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK-VLN----NGYRN 159 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~~~----~~~~~ 159 (349)
.+..+...|++++|.+.+++..+.....+. ...+..+...+...+++++|+..++ ....... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 345555666666666666665542111111 0123335555555556666666666 2221111 111 14556
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh----c-CCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC----ccc-chhhHH
Q 018924 160 VISSLLKLDDLESAEKIFEEWES----Q-ALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG----REI-HVKSWY 228 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~ 228 (349)
+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...+++..+.. ..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666666552 1 1111 12355666666777777777777666555321 111 134566
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHH
Q 018924 229 YLATGYRQNSQ-IHKAVEAMKKVLAA 253 (349)
Q Consensus 229 ~li~~~~~~~~-~~~a~~~~~~~~~~ 253 (349)
.+..+|...|+ +++|.+.+++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 66666777773 47777777666654
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=9.4e-09 Score=83.40 Aligned_cols=195 Identities=8% Similarity=-0.022 Sum_probs=127.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
.+...+..+...+.+.|++++|+..|++..+... .+...|..+..++.+.|++++|...+++.. +... .+...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDG-QSVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CCHHHHHHH
Confidence 3567788888999999999999999999988642 267788889999999999999999999987 5443 567788889
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL 170 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 170 (349)
..+|...|++++|...|++..+..+... ..+...+....+. ..+...........+.+......+.. + ..|+.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 9999999999999999998877544221 1222222222211 11222222223333444443333322 2 25778
Q ss_pred HHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc-CcHHHHHHHHHHHHH
Q 018924 171 ESAEKIFEEWESQALCYD-TRIPNFLIDVYCRN-GLLEKAENLVNHEKL 217 (349)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 217 (349)
++|.+.++...+. .|+ ......+...+.+. +.+++|.++|....+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888877776654 333 33333344444444 567788888877654
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=2.1e-07 Score=75.91 Aligned_cols=171 Identities=14% Similarity=0.048 Sum_probs=117.9
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC---CC--c
Q 018924 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN------NGYRNVISSLLKLDDLESAEKIFEEWESQALC---YD--T 189 (349)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 189 (349)
..+...+..+...|++++|.+.++......+... ..+..+...+...|++++|...+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4556667777888888888888873222222111 22344566677888999999999888753211 11 3
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHH---cCcc-c--chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-
Q 018924 190 RIPNFLIDVYCRNGLLEKAENLVNHEKL---KGRE-I--HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP- 262 (349)
Q Consensus 190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p- 262 (349)
.+++.+...|...|++++|...|++..+ .... + ...++..+...|...|++++|..++++.++.... .+...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~-~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCcHHH
Confidence 4678888899999999999999988773 2111 1 1257888889999999999999999998865111 11111
Q ss_pred CHHHHHHHHHHHHhcCChhhH-HHHHHHHhh
Q 018924 263 SVESLAACLDYFKDEGDIGGA-ENFIELLND 292 (349)
Q Consensus 263 ~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 292 (349)
-..+|..+..+|.+.|+.++| ...++....
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 267788888899999999999 777776554
No 118
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.99 E-value=1e-08 Score=78.63 Aligned_cols=156 Identities=10% Similarity=-0.034 Sum_probs=75.0
Q ss_pred hhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHh---h--c-cCChhhHHHHHHHHhccC
Q 018924 95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK---A--V-KVLNNGYRNVISSLLKLD 168 (349)
Q Consensus 95 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~-~~~~~~~~~li~~~~~~~ 168 (349)
...|++++|.+.++.+.. ..+....++..+...+...|++++|...++.... . . +....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 346677777774444432 1212225666677777777777777777762111 0 1 112234555555666666
Q ss_pred CHHHHHHHHHHHHhc----CCCC--CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc---ccc--hhhHHHHHHHHhcC
Q 018924 169 DLESAEKIFEEWESQ----ALCY--DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR---EIH--VKSWYYLATGYRQN 237 (349)
Q Consensus 169 ~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~~~~ 237 (349)
++++|...+++..+. +..+ ....+..+...+...|++++|...+++...... .+. ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 666666666554432 1000 122344455555555566666555555443110 001 12234445555555
Q ss_pred CCHHHHHHHHHHHHH
Q 018924 238 SQIHKAVEAMKKVLA 252 (349)
Q Consensus 238 ~~~~~a~~~~~~~~~ 252 (349)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555554
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=5.6e-08 Score=75.25 Aligned_cols=166 Identities=6% Similarity=-0.016 Sum_probs=133.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHhhcCCCCCccHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS----DHEGIDKILTMMEADPNVALDWVI 86 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 86 (349)
-+..++..|...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++.. +.+ +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAG---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTT---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCC---CHHH
Confidence 367788889999999999999999999999875 66777788888877 6 8999999999987 544 4566
Q ss_pred HHHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhhHH
Q 018924 87 YATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNNGYR 158 (349)
Q Consensus 87 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (349)
+..|...|.. .+++++|++.|++..+.+...+.+.++..|...|.. .+++++|+..|+..... +.+...+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888887 899999999999998754321112688899999988 88999999999943332 44556777
Q ss_pred HHHHHHhcc-C-----CHHHHHHHHHHHHhcCC
Q 018924 159 NVISSLLKL-D-----DLESAEKIFEEWESQAL 185 (349)
Q Consensus 159 ~li~~~~~~-~-----~~~~a~~~~~~~~~~~~ 185 (349)
.+...|... | ++++|...|+...+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 788777643 3 89999999999988773
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=8.9e-08 Score=74.01 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924 51 YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130 (349)
Q Consensus 51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (349)
+..+...+...|++++|...+++.. .|+..+|..+..+|...|++++|.+.|++..+. .|+...+|..+..++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 3444555556666666666665543 234555566666666666666666666665553 233334555666666
Q ss_pred hhcCCHHHHHHHHH
Q 018924 131 GKYGKKDDVLRIWE 144 (349)
Q Consensus 131 ~~~~~~~~a~~~~~ 144 (349)
...|++++|+..|+
T Consensus 82 ~~~~~~~~A~~~~~ 95 (213)
T 1hh8_A 82 YQTEKYDLAIKDLK 95 (213)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcccHHHHHHHHH
Confidence 66666666666665
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=1e-07 Score=73.63 Aligned_cols=126 Identities=13% Similarity=0.032 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
...+..+...+...|++++|+..|++. +.|+...|..+..++...|++++|...+++.. .... .+...|..+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK-HLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-cchHHHHHHHH
Confidence 344566777888888999988888776 35677888888888888899999988888876 3332 45677888888
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCc--------------chhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAK--------------VNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+|...|++++|.+.|++..+..+... ...++..+..++...|++++|...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888999999988888877533222 11345555555555555555555555
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=3e-08 Score=69.80 Aligned_cols=95 Identities=14% Similarity=-0.084 Sum_probs=40.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR 201 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 201 (349)
.+......|.+.|++++|++.|+......+.+...|..+..++.+.|++++|...+++..+.. +.+...|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 344444444444444444444442222223333344444444444444444444444444432 2233344444444444
Q ss_pred cCcHHHHHHHHHHHHH
Q 018924 202 NGLLEKAENLVNHEKL 217 (349)
Q Consensus 202 ~~~~~~a~~~~~~~~~ 217 (349)
.|++++|...|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.94 E-value=4e-08 Score=69.13 Aligned_cols=110 Identities=9% Similarity=-0.016 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
...|......+.+.|++++|++.|++.++... .+...|..+..++.+.|++++|+..+++.. +.+. .+...|..+..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p-~~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCI-RLDS-KFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHH-Hhhh-hhhHHHHHHHH
Confidence 45566777777777777777777777776542 256677777777777777777777777766 3333 44566777777
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (349)
++...|++++|.+.|++..+. .|+...++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 777777777777777777763 444434444443
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=3e-07 Score=74.97 Aligned_cols=170 Identities=11% Similarity=-0.062 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH----HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC---c-c
Q 018924 48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW----VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA---K-V 119 (349)
Q Consensus 48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~-~ 119 (349)
...+...+..+...|++++|.+.+++........++. ..+..+...+...|++++|...+++..+..... . .
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3456667778889999999999988766232222221 234457777888899999999999887532211 1 1
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHH---hhccCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhcC----CCC-
Q 018924 120 NSAYNVILTLYGKYGKKDDVLRIWELYK---KAVKVL----NNGYRNVISSLLKLDDLESAEKIFEEWESQA----LCY- 187 (349)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~- 187 (349)
..+|+.+...|...|++++|+..|+... ...+.+ ..++..+...|...|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 2478899999999999999999998222 222221 1578889999999999999999998876532 111
Q ss_pred CcchHHHHHHHHHhcCcHHHH-HHHHHHHHH
Q 018924 188 DTRIPNFLIDVYCRNGLLEKA-ENLVNHEKL 217 (349)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 217 (349)
-..+|..+..+|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 145678888999999999999 777776653
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=9.1e-08 Score=70.59 Aligned_cols=94 Identities=9% Similarity=-0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN 202 (349)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 202 (349)
+..+...+...|++++|...|+......+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 33333344444444444444442222222233333444444444444444444444443332 22233344444444444
Q ss_pred CcHHHHHHHHHHHHH
Q 018924 203 GLLEKAENLVNHEKL 217 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~ 217 (349)
|++++|...|++..+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444444
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=1.2e-07 Score=70.03 Aligned_cols=130 Identities=15% Similarity=0.023 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..+..+...+...|++++|...|++..+. .|+...++..+...+...|++++|...++......+.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44566777777888888888888887764 3333367778888888888888888888844444455566777888888
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcchHHH--HHHHHHhcCcHHHHHHHHHHHHH
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTRIPNF--LIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
...|++++|...+++..+.. +.+...+.. +...+...|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888877753 233334432 33336667778888877776543
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=3.1e-08 Score=71.94 Aligned_cols=96 Identities=9% Similarity=-0.068 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..+..+...+.+.|++++|+..|++.... .|+....|..+..+|...|++++|+..|+....-.|.+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 33444555555555555555555555542 2333345555555555555555555555533333333344455555555
Q ss_pred hccCCHHHHHHHHHHHHh
Q 018924 165 LKLDDLESAEKIFEEWES 182 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~ 182 (349)
...|++++|...|+...+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=1e-07 Score=73.01 Aligned_cols=120 Identities=9% Similarity=0.055 Sum_probs=60.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc---CCCCC-ccHHHHHHHHHHHhhcCc
Q 018924 24 YKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA---DPNVA-LDWVIYATVGNGYGKVGL 99 (349)
Q Consensus 24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~~~~li~~~~~~g~ 99 (349)
...|++++|.++++..... ......++..+...+...|++++|...+++... ..+.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456666666644444321 122344566666666666666666666665431 11111 223445556666666666
Q ss_pred HHHHHHHHHHHHHhhc----CC-cchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 100 LDKALAMLKKSEEQIK----GA-KVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+++|.+.+++..+... .+ ....++..+...+...|++++|...++
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYE 131 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6666666665544211 11 111345555556666666666666655
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.88 E-value=1.1e-07 Score=66.22 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|++++|...++++. .... .+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-ccHHHHHHHHH
Confidence 5667777788888888888888888877653 2356677777777888888888888887776 3222 45666777777
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK 132 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (349)
.+...|++++|...|+++.+. .|+....+..+...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHh
Confidence 888888888888888877764 33332455555554443
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=2.5e-08 Score=80.86 Aligned_cols=195 Identities=12% Similarity=-0.025 Sum_probs=114.4
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS 162 (349)
Q Consensus 83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 162 (349)
+...+..+...+.+.|++++|...|++..+. .|+....|..+..++...|++++|+..++......+.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566777788888888888888888888774 44444678888888888888888888888444444455667777888
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH
Q 018924 163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242 (349)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 242 (349)
++...|++++|...|+...+... .+...+...+....+ ...+... ..........+......+ ..+ ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 88888888888888887766431 111122222222211 1111111 112222232333333333 222 2577777
Q ss_pred HHHHHHHHHHHhcccccCCCCHHHHHHHH-HHHHhc-CChhhHHHHHHHHhhC
Q 018924 243 AVEAMKKVLAAYQTLVKWKPSVESLAACL-DYFKDE-GDIGGAENFIELLNDK 293 (349)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~-g~~~~a~~~~~~~~~~ 293 (349)
|++.++.+. ...|+......-+ ..+.+. +.+++|.++|..+.+.
T Consensus 154 A~~~~~~al-------~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNH-------EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGG-------TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhh-------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 777777766 4456543332222 223333 5567777777776654
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-07 Score=67.17 Aligned_cols=120 Identities=10% Similarity=-0.002 Sum_probs=76.3
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924 10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT 89 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (349)
+.+...|..+...+.+.|++++|...|++..+... .+...+..+..++...|++++|...+++.. +... .+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECI-QLEP-TFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HHCT-TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CchHHHHH
Confidence 34566677777777777777777777777766532 255566667777777777777777777765 3222 34556666
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (349)
+..++.+.|++++|.+.|++..+.. |.....+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 7777777777777777777766542 333245555555555443
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.85 E-value=1.3e-07 Score=65.83 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=50.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 234 (349)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 344555555555555555555555555432 233444555555555555555555555555543321 344455555555
Q ss_pred hcCCCHHHHHHHHHHHHH
Q 018924 235 RQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~ 252 (349)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555553
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.85 E-value=8.4e-08 Score=67.48 Aligned_cols=121 Identities=15% Similarity=0.061 Sum_probs=86.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
.+...|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++.. .... .+...+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~ 86 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDP-AYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH-hcCc-cCHHHHHHH
Confidence 356677778888888888888888888877653 2356677777778888888888888888776 3222 346667777
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK 136 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (349)
...+...|++++|...|++..+. .|+...++..+..++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 77888888888888888887764 333335677777777666654
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=2.5e-08 Score=79.42 Aligned_cols=198 Identities=7% Similarity=-0.099 Sum_probs=142.8
Q ss_pred hcCcHHHHHHHHHHHHHhhcCCcchhhHHHH-------HHHHhhcCCHHHHHHHHHHHHhhccCCh--------------
Q 018924 96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVI-------LTLYGKYGKKDDVLRIWELYKKAVKVLN-------------- 154 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 154 (349)
..++...|.+.|.+..+. .|+....|..+ ...+.+.++..+++..++ ...++.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~-~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS-GSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH-HTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH-HHhcCChhhhhhhhccCCccccc
Confidence 579999999999999884 56665788888 566666666666666555 122222211
Q ss_pred --------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc--h
Q 018924 155 --------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--V 224 (349)
Q Consensus 155 --------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 224 (349)
.........+...|++++|.++|+.+...+ |+......+...+.+.+++++|...|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 123446677889999999999999887654 433355667778899999999999998554421 111 2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHH
Q 018924 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD 302 (349)
Q Consensus 225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 302 (349)
..+..+..++...|++++|++.|++.... ...|. .........++.+.|+.++|..+|+++....|. ...+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g-----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDS-----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 36777888999999999999999998752 32254 345566677788999999999999999998776 66666
Q ss_pred HHh
Q 018924 303 KLL 305 (349)
Q Consensus 303 ~l~ 305 (349)
.|.
T Consensus 246 aL~ 248 (282)
T 4f3v_A 246 ALK 248 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=4.1e-08 Score=71.27 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=47.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 235 (349)
.+..+...+.+.|++++|...|+.+.+.. +.+...|..+..+|...|++++|...|++.....+. ++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 34444444555555555555555555432 233444555555555555555555555555554332 3444555555555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 018924 236 QNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 236 ~~~~~~~a~~~~~~~~~ 252 (349)
..|++++|...|+++++
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555553
No 136
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=1.3e-05 Score=70.26 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccccCCC-CHHHHH
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ-NSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLA 268 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~ 268 (349)
+|...+..+.+.+.++.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+. .| +...+.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-------~~~~~~~~~ 358 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-------HPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-------CTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-------CCCCHHHHH
Confidence 4555555566677899999999988 32 22233344322222122 33699999999999875 23 344556
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 269 ACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 269 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
..++...+.|+.+.|+.+|+.+. .....|...+ .-...| +.+..+++++..
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777788999999999999873 2455677777 555667 567777877753
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.83 E-value=2.2e-08 Score=75.04 Aligned_cols=118 Identities=7% Similarity=-0.023 Sum_probs=45.3
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH-HhccCCH--HHH
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS-LLKLDDL--ESA 173 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~a 173 (349)
.|++++|...+++..+. .|+...+|..+...|...|++++|...|+......+.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444444444444432 122223444444444444444444444442222222233333333333 3344443 444
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924 174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL 217 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 217 (349)
...++.+.+.. +.+...+..+...|...|++++|...|+++.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 44444444332 12233333344444444444444444444443
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=1.2e-07 Score=66.57 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..+..+...+...|++++|...|++.... .|+...++..+...+...|++++|...++......+.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34444555555555555555555555443 2222244555555555555555555555522222233334444444455
Q ss_pred hccCCHHHHHHHHHHHHh
Q 018924 165 LKLDDLESAEKIFEEWES 182 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~ 182 (349)
...|++++|...+++..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 555555555555555444
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=2.8e-07 Score=65.01 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924 48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127 (349)
Q Consensus 48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (349)
...+..+...+...|++++|...+++.. +... .+..++..+..++...|++++|.+.+++..+. .|+...++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAI-KRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH-TTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3455555666666666666666666655 3222 34455555666666666666666666665553 223224555566
Q ss_pred HHHhhcCCHHHHHHHHH
Q 018924 128 TLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~ 144 (349)
.++...|++++|...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 66666666666666665
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=3.2e-06 Score=69.59 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=145.0
Q ss_pred hhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC-CHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc-C-CHH
Q 018924 95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG-KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL-D-DLE 171 (349)
Q Consensus 95 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~ 171 (349)
.+.+..++|+++++++... .|+...+|+.--..+...| ++++++..++......+-+..+|+.-...+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 3344556788888888774 4455467877777777777 488888888855555555556676666555555 5 778
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH--------HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC----
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE--------KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ---- 239 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---- 239 (349)
+++++++.+.+.. +-|...|+--.-.+.+.|.++ ++.+.++++.+.++. |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 8888888887754 445666665555555555555 888899999887765 77888888888877776
Q ss_pred ---HHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCCh--------------------hhHHHHHHHHhhCC-
Q 018924 240 ---IHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDI--------------------GGAENFIELLNDKG- 294 (349)
Q Consensus 240 ---~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~- 294 (349)
++++++++++++.. .| |...|+.+-..+.+.|+. .....+...+....
T Consensus 221 ~~~~~eELe~~~~aI~~-------~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL-------IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp HHHHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred hHHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 68899999988854 56 566666665556555543 22333333333222
Q ss_pred -----CCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924 295 -----FIPTDLQDKLL-DNVQNG--KSNLETLRELYGN 324 (349)
Q Consensus 295 -----~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~ 324 (349)
++++.....++ .|...| ++|.++++.+.+.
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 34555666677 888777 7899999988643
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=2.1e-07 Score=77.45 Aligned_cols=124 Identities=15% Similarity=-0.038 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-------------hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-------------NSAYNVILTLYGKYGKKDDVLRIWELYKKAV 150 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (349)
...+..+...+.+.|++++|...|++..+..+.... ..+|..+..+|.+.|++++|+..++......
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445566666667777777777777766654322210 1344444444444444444444444222222
Q ss_pred cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208 (349)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 208 (349)
+.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444432 22233344444444444444444
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.80 E-value=1.8e-08 Score=77.18 Aligned_cols=148 Identities=11% Similarity=0.032 Sum_probs=70.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc----------------ch
Q 018924 128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT----------------RI 191 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~ 191 (349)
......|+++.+.+.|++...........+..+...+...|++++|...|++..+.. +.+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHH
Confidence 334444555555555552222222223345556666666667777777666666532 1111 34
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAAC 270 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l 270 (349)
+..+..+|...|++++|...+++..+..+. +...+..+..+|...|++++|.+.|++.++. .| +...+..+
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l 162 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL-------NPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHH
Confidence 555555556666666666666655554322 4445555555666666666666666665532 33 33444444
Q ss_pred HHHHHhcCChhhHH
Q 018924 271 LDYFKDEGDIGGAE 284 (349)
Q Consensus 271 l~~~~~~g~~~~a~ 284 (349)
..++...++.+++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.79 E-value=6.8e-06 Score=67.68 Aligned_cols=183 Identities=9% Similarity=-0.015 Sum_probs=121.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS-DHEGIDKILTMMEADPNVALDWVIYATVGNGY 94 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 94 (349)
++.+-....+.+..++|+++++.++..+.. +..+|+.--.++...| ++++++.+++.+. ..+. -+..+|+.-..++
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFA-VQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHH
Confidence 333333344455567899999999887543 5567777777777778 5899999999887 5444 5667777666666
Q ss_pred hhc-C-cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH--------HHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 95 GKV-G-LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD--------DVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 95 ~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
.+. + ++++++++++++.+. .|....+|+--.-.+.+.|.++ ++++.++......+-|...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 665 6 788899999888864 3444367776666666655555 777777744444455666777777777
Q ss_pred hccCC-------HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc
Q 018924 165 LKLDD-------LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL 204 (349)
Q Consensus 165 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 204 (349)
.+.+. ++++.+.+.++.... +-|...|+-+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 66665 567777777766653 4455566655555555444
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.79 E-value=6e-08 Score=72.67 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=85.9
Q ss_pred HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH-HhhcCCH
Q 018924 58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL-YGKYGKK 136 (349)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 136 (349)
+...|++++|...+++.. .... .+...|..+...|...|++++|...|++..+.. |+....+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKI-RANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHH-HHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCc
Confidence 345677788888888776 3332 456777788888888888888888888887754 3333577777777 6778887
Q ss_pred --HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924 137 --DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184 (349)
Q Consensus 137 --~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 184 (349)
++|...++......+.+...+..+...+...|++++|...++.+.+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888884444444556677778888888888888888888887753
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=1.4e-07 Score=68.32 Aligned_cols=97 Identities=9% Similarity=-0.071 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS 163 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 163 (349)
...+..+...+.+.|++++|...|++.... .|+....|..+..++...|++++|+..|+......+.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 344455556666666666666666665553 333334566666666666666666666663333333444555556666
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 018924 164 LLKLDDLESAEKIFEEWES 182 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~ 182 (349)
+...|++++|...|+...+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=5.7e-07 Score=71.62 Aligned_cols=195 Identities=13% Similarity=-0.019 Sum_probs=135.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHhhcCCCCCcc--------------
Q 018924 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTR-------LSAYADASDHEGIDKILTMMEADPNVALD-------------- 83 (349)
Q Consensus 25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 83 (349)
+.++...|.+.|.+..+.... ....|..+ ...+...++..+++..+..-. ++.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCcccc
Confidence 689999999999999987433 45677777 445555555555554444433 22121
Q ss_pred --------HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC--
Q 018924 84 --------WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-- 153 (349)
Q Consensus 84 --------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 153 (349)
...+..+...+...|++++|.++|+.+... .|.. .....+...+.+.+++++|+..|+. ....|+
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~-~~~~~~a~l~~~~~r~~dA~~~l~~--a~~~~d~~ 168 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEH-LVAWMKAVVYGAAERWTDVIDQVKS--AGKWPDKF 168 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHH-HHHHHHHHHHHHTTCHHHHHHHHTT--GGGCSCHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCch-HHHHHHHHHHHHcCCHHHHHHHHHH--hhccCCcc
Confidence 233345777888999999999999988764 3444 2666677788899999999999981 111222
Q ss_pred --hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHH
Q 018924 154 --NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD--TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY 229 (349)
Q Consensus 154 --~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 229 (349)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+..
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~a 246 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHH
Confidence 23677888899999999999999998875433243 2345567778889999999999999999865 44333333
Q ss_pred H
Q 018924 230 L 230 (349)
Q Consensus 230 l 230 (349)
|
T Consensus 247 L 247 (282)
T 4f3v_A 247 L 247 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=3.5e-07 Score=76.15 Aligned_cols=153 Identities=12% Similarity=-0.037 Sum_probs=116.5
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC---------------hhhHHHHH
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL---------------NNGYRNVI 161 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li 161 (349)
.+++++|...|+...+. .|.....|..+...+...|++++|+..|+......+.+ ...|..+.
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34555666666554432 23333688899999999999999999999433333333 36788889
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924 162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 241 (349)
.++.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988864 456778888899999999999999999998886543 5667888888888888888
Q ss_pred HH-HHHHHHHHHH
Q 018924 242 KA-VEAMKKVLAA 253 (349)
Q Consensus 242 ~a-~~~~~~~~~~ 253 (349)
+| ...|+.|...
T Consensus 282 ~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 282 AREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 88 4567777654
No 148
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=1.6e-05 Score=69.67 Aligned_cols=101 Identities=11% Similarity=0.153 Sum_probs=61.3
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhcCCCCC-ccHHH
Q 018924 9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMMEADPNVA-LDWVI 86 (349)
Q Consensus 9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~ 86 (349)
+.--..+|...+..+-. |+++.+..+|++.... .|+...|...+.-..+.++ .+....+|+......|.. .+...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 34445666666666654 7788888888887764 4677777777776666553 344556666655233322 35666
Q ss_pred HHHHHHHHh----hcCcHHHHHHHHHHHHH
Q 018924 87 YATVGNGYG----KVGLLDKALAMLKKSEE 112 (349)
Q Consensus 87 ~~~li~~~~----~~g~~~~a~~~~~~~~~ 112 (349)
|...+..+. ..|+++.+.++|++...
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 666666543 24567777777777765
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=1.4e-07 Score=68.32 Aligned_cols=93 Identities=13% Similarity=0.017 Sum_probs=43.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ 236 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 236 (349)
+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++.....+. +...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3334444444455555555544444432 223344444444445555555555555544443321 33344444445555
Q ss_pred CCCHHHHHHHHHHHH
Q 018924 237 NSQIHKAVEAMKKVL 251 (349)
Q Consensus 237 ~~~~~~a~~~~~~~~ 251 (349)
.|++++|.+.|++.+
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555544
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=5.3e-07 Score=63.22 Aligned_cols=100 Identities=14% Similarity=0.009 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
+...|..+...+.+.|++++|+..|++..+... .+...|..+..++.+.|++++|+..+++.. +.+. .+...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~lg 79 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAI-EKDP-NFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CcHHHHHHHH
Confidence 345677777778888888888888888777542 256677777777888888888888887776 3332 3466677777
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhh
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQI 114 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~ 114 (349)
.++...|++++|...|++..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 77888888888888887776643
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.73 E-value=3.4e-05 Score=63.24 Aligned_cols=233 Identities=9% Similarity=0.036 Sum_probs=147.4
Q ss_pred hcCChH-HHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc----------HHHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 018924 60 DASDHE-GIDKILTMMEADPNVALDWVIYATVGNGYGKVGL----------LDKALAMLKKSEEQIKGAKVNSAYNVILT 128 (349)
Q Consensus 60 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (349)
+.|.++ +|+.+++.+. ..++ -+..+|+.--..+...+. +++++.+++.+... .|....+|+.-..
T Consensus 41 ~~~e~s~eaL~~t~~~L-~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQIL-GANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHH-TTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH-HHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 445544 5777777776 4333 334445433222222222 56777777777764 3444367777777
Q ss_pred HHhhcC--CHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---
Q 018924 129 LYGKYG--KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD-LESAEKIFEEWESQALCYDTRIPNFLIDVYCRN--- 202 (349)
Q Consensus 129 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 202 (349)
.+...+ ++++++.+++......+-+...|+.-.-.....|. ++++.+.+..+.+.. +.|...|+-....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 776766 47788888874445555666777776666667776 578888888887765 45666666655555544
Q ss_pred -----------CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhcccccC
Q 018924 203 -----------GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN-----------SQIHKAVEAMKKVLAAYQTLVKW 260 (349)
Q Consensus 203 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~ 260 (349)
+.++++.+.+.......+. |...|+.+-..+.+. +.++++++.++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~------- 267 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL------- 267 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-------
Confidence 4578888888888876654 666776555555444 4578899999999865
Q ss_pred CCCH-HHHHH---HHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 261 KPSV-ESLAA---CLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 261 ~p~~-~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
.||. ..+.. +..+.-..|..+++...+.++.+.+|....-|..+.
T Consensus 268 ~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 268 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 5653 22222 222223467777888899998888776665665554
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.72 E-value=4.9e-07 Score=63.57 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=68.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc--c----hhhHHH
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI--H----VKSWYY 229 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 229 (349)
.+..+...+.+.|++++|...|++..+.. +.+...|+.+..+|...|++++|...+++..+..+.. + ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666677777777777777766643 3345566677777777777777777777666532110 0 135666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA 269 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 269 (349)
+..++...|++++|++.|++.+.. .||..+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~-------~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE-------FRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------SCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-------CcCHHHHHH
Confidence 777778888888888888888754 566554433
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=4.4e-07 Score=63.60 Aligned_cols=96 Identities=17% Similarity=0.042 Sum_probs=57.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 235 (349)
.+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+..+. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34455555666666666666666665543 334555666666666666666666666666654432 3555666666666
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 018924 236 QNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~ 253 (349)
..|++++|.+.|++.++.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666666643
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=5.5e-07 Score=61.30 Aligned_cols=99 Identities=14% Similarity=0.034 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC---CHH
Q 018924 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP---SVE 265 (349)
Q Consensus 189 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p---~~~ 265 (349)
...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.++++.+. .| +..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~ 77 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV-------IEDEYNKD 77 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------SCCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CcccchHH
Confidence 344555666666666666666666666654432 4455666666666677777777777766642 23 355
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHHHHhhCCC
Q 018924 266 SLAACLDYFKDE-GDIGGAENFIELLNDKGF 295 (349)
Q Consensus 266 ~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~ 295 (349)
.+..+..++... |++++|.+.++.+....+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 666666666677 777777777776666544
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=4.2e-07 Score=65.33 Aligned_cols=97 Identities=13% Similarity=-0.014 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..+..+...+.+.|++++|...|++.... .|+....|..+..++...|++++|+..|+......+.+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34445555666666666666666666553 3333355666666666666666666666633333344445556666666
Q ss_pred hccCCHHHHHHHHHHHHhc
Q 018924 165 LKLDDLESAEKIFEEWESQ 183 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~ 183 (349)
...|++++|...|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665553
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.69 E-value=4.5e-08 Score=74.87 Aligned_cols=95 Identities=11% Similarity=-0.050 Sum_probs=55.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY 234 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 234 (349)
..+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 456666667777777777777777776653 344556666777777777777777777777665432 444555555555
Q ss_pred hcCCCHHHHH-HHHHHHH
Q 018924 235 RQNSQIHKAV-EAMKKVL 251 (349)
Q Consensus 235 ~~~~~~~~a~-~~~~~~~ 251 (349)
...++.+++. ..+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5555555444 3344443
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.67 E-value=7.7e-07 Score=65.65 Aligned_cols=102 Identities=12% Similarity=0.007 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
.+...|..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..+++.. +.+. .+...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELAT-VVDP-KYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCC-CCHHHHHHH
Confidence 35677888888899999999999999998876432 66788888888899999999999998887 4333 457778888
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhc
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIK 115 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~ 115 (349)
..+|...|++++|...|++..+..+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC
Confidence 8889999999999999988887543
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=1.7e-06 Score=59.38 Aligned_cols=96 Identities=20% Similarity=0.155 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..+..+...+...|++++|...|++.... .|+....+..+...+...|++++|...++......+.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34445555555666666666666655543 2222245555555556666666666655532222333344455555555
Q ss_pred hccCCHHHHHHHHHHHHh
Q 018924 165 LKLDDLESAEKIFEEWES 182 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~ 182 (349)
...|++++|...++...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555554
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.2e-05 Score=69.19 Aligned_cols=98 Identities=5% Similarity=-0.064 Sum_probs=52.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC--c-cc-c--h
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCY-----DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG--R-EI-H--V 224 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~-~--~ 224 (349)
++..+...+...|++++|..+++++...-... ...++..++..|...|++++|..++++..... . .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 44555556666666666666665554311010 12345566666666677777776666554311 1 11 1 2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
..+..+...+...|++++|...|.+..+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555666677777777776666543
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=1.1e-06 Score=60.44 Aligned_cols=99 Identities=11% Similarity=-0.062 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAAC 270 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l 270 (349)
+..+...+...|++++|...|+......+. +...+..+...+...|++++|...++++.+. .| +...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ 78 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------KPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------CcccHHHHHHH
Confidence 333444444455555555555544443221 3344444444455555555555555555432 22 33444444
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924 271 LDYFKDEGDIGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 271 l~~~~~~g~~~~a~~~~~~~~~~~~~~~ 298 (349)
..++...|++++|...++...+..+.+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 4455555555555555555544444333
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=9.1e-07 Score=63.52 Aligned_cols=98 Identities=9% Similarity=-0.030 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
...+..+...+.+.|++++|...|+.....+. .+...|..+..++...|++++|...|++.. ..+. .+...+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGA-LMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCC-CCcHHHHHHHH
Confidence 34455555566666666666666666665432 245556666666666666666666666655 3222 33444555666
Q ss_pred HHhhcCcHHHHHHHHHHHHHh
Q 018924 93 GYGKVGLLDKALAMLKKSEEQ 113 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~ 113 (349)
+|...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666554
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=4.6e-07 Score=61.70 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc--cHHHHHH
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL--DWVIYAT 89 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ 89 (349)
+...|..+...+.+.|++++|...|++..+... .+...+..+..++...|++++|...+++.. +... . +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVI-NVIE-DEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSC-CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCc-ccchHHHHHH
Confidence 445566677777777777777777777766532 245566677777777777777777777766 3222 2 4566667
Q ss_pred HHHHHhhc-CcHHHHHHHHHHHHHh
Q 018924 90 VGNGYGKV-GLLDKALAMLKKSEEQ 113 (349)
Q Consensus 90 li~~~~~~-g~~~~a~~~~~~~~~~ 113 (349)
+..++.+. |++++|.+.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 77777777 7777777777777654
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=1.2e-06 Score=64.49 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=52.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 235 (349)
.+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+..+. +...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34445555555555555555555555542 224445555555555666666666666655554322 3445555555666
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 018924 236 QNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~ 253 (349)
..|++++|.+.|++.++.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666665543
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.62 E-value=1.4e-06 Score=61.90 Aligned_cols=101 Identities=9% Similarity=-0.028 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV 90 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (349)
.+...|..+...+...|++++|+..|........ .+...|..+..++...|++++|...+++.. +.+. .+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDG-QSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCc-hhHHHHHHH
Confidence 3567777778888888888888888888777642 256677777777888888888888887776 3332 356677777
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhh
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQI 114 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~ 114 (349)
..++...|++++|...|++..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 778888888888888887776643
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.62 E-value=9e-07 Score=62.07 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=72.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc--cc----hhhHHH
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE--IH----VKSWYY 229 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 229 (349)
.+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++....... ++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566666667777777777777766653 335556667777777777777777777777654321 11 556777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHH
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 273 (349)
+...+...|++++|.+.|+++.+. .|+......+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE-------HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 777888888888888888888754 4555554444433
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=1.4e-06 Score=61.15 Aligned_cols=95 Identities=19% Similarity=0.109 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHh---hccCC----hhhHH
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK---AVKVL----NNGYR 158 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~ 158 (349)
++..+...+.+.|++++|++.|++..+. .|+...+|..+..+|...|++++|+..++.... ...++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3445556666666666666666665553 333335566666666666666666666651111 11111 01334
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHh
Q 018924 159 NVISSLLKLDDLESAEKIFEEWES 182 (349)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~~~~ 182 (349)
.+..++...|++++|.+.|++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444555555555555555444
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=5.5e-06 Score=71.40 Aligned_cols=200 Identities=10% Similarity=-0.039 Sum_probs=131.4
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcc---------------hhhHHHHHHHHhhcCCHHHHHHHHHH--HHhhccCCh
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKV---------------NSAYNVILTLYGKYGKKDDVLRIWEL--YKKAVKVLN 154 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~ 154 (349)
..+.+.|++++|++.|.++.+....... ..++..+...|...|++++|.+.+.. ...+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456667777777777766653221111 02467788888889999998888872 111111221
Q ss_pred ----hhHHHHHHHHhccCCHHHHHHHHHHHHh----cCCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHHc--Cc--c
Q 018924 155 ----NGYRNVISSLLKLDDLESAEKIFEEWES----QALCYD-TRIPNFLIDVYCRNGLLEKAENLVNHEKLK--GR--E 221 (349)
Q Consensus 155 ----~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~ 221 (349)
.+.+.+...+...|+++.|..++..... .+..+. ..++..+...|...|++++|..+++.+... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1233344445567889999998887664 222222 346778999999999999999999987753 11 1
Q ss_pred c-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 222 I-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 222 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
+ ....+..++..|...|++++|..++++........ ...|. ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI-YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 24578888999999999999999999987641110 11111 34566666777889999999888776654
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.61 E-value=7.3e-07 Score=65.16 Aligned_cols=102 Identities=22% Similarity=0.159 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCc-----ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHH
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGR-----EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE 265 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 265 (349)
++..+...+...|++++|...+++..+... ......+..+...+...|++++|.+.+++..+.............
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344455555555555555555555443110 001334555666666677777777777666643111100011234
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924 266 SLAACLDYFKDEGDIGGAENFIELLND 292 (349)
Q Consensus 266 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 292 (349)
.+..+...+...|++++|...+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455666666777777777777766543
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.58 E-value=1e-06 Score=61.77 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc---CC----hhhH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK---VL----NNGY 157 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~----~~~~ 157 (349)
..+..+...+...|++++|...|++..+.. |+...++..+...+...|++++|...++......+ ++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 344555566666666666666666665532 22224556666666666666666666662111111 11 3445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 018924 158 RNVISSLLKLDDLESAEKIFEEWES 182 (349)
Q Consensus 158 ~~li~~~~~~~~~~~a~~~~~~~~~ 182 (349)
..+..++...|++++|.+.++...+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555555556666666666655555
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=2e-06 Score=61.03 Aligned_cols=97 Identities=12% Similarity=-0.062 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS 163 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 163 (349)
...+..+...+...|++++|...|++.... .|+...+|..+..++...|++++|...++......+.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 344444555555555555555555554442 222224455555555555555555555552222223333444444455
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 018924 164 LLKLDDLESAEKIFEEWES 182 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~ 182 (349)
+...|++++|...|+...+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555544443
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=0.00014 Score=59.57 Aligned_cols=232 Identities=8% Similarity=-0.027 Sum_probs=161.1
Q ss_pred HHHHHHHHHHH---HhcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHhhcCC
Q 018924 13 TVVYNSMLKLY---YKTGNFE-KLDSLMHEMEENGITYDRYTYCTRLSAYADASD----------HEGIDKILTMMEADP 78 (349)
Q Consensus 13 ~~~~~~li~~~---~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 78 (349)
+..|..+...+ .+.|.++ +|+++++.++..+.. +..+|+.--.++...+. +++++.+++.+. ..
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L-~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL-RV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH-Hh
Confidence 44565555543 4566666 799999999987533 44466655444444333 678889999887 43
Q ss_pred CCCccHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCC-HHHHHHHHHHHHhhccCChh
Q 018924 79 NVALDWVIYATVGNGYGKVG--LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNN 155 (349)
Q Consensus 79 ~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~ 155 (349)
+. -+..+|+.-..++.+.| .+++++.+++++.+. .|....+|+--...+...|. ++++++.++......+-|..
T Consensus 104 ~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S 180 (331)
T 3dss_A 104 NP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 180 (331)
T ss_dssp CT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence 44 57778877777777777 489999999999985 44444789888888888888 58999999844455566777
Q ss_pred hHHHHHHHHhcc--------------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-----------CcHHHHHH
Q 018924 156 GYRNVISSLLKL--------------DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN-----------GLLEKAEN 210 (349)
Q Consensus 156 ~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~ 210 (349)
.|+.....+.+. +.++++.+.+....... +-|...|+-+-..+.+. +.++++.+
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 777766655544 45788999999888764 55677776554444444 45789999
Q ss_pred HHHHHHHcCcccchhhHHHHHH-----HHhcCCCHHHHHHHHHHHHHH
Q 018924 211 LVNHEKLKGREIHVKSWYYLAT-----GYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~~~~~ 253 (349)
.++++.+.. ||. .|..+.. .....+..+++..++.++.+.
T Consensus 260 ~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 260 SCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 999999855 554 3433222 223467788889999998854
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=7.2e-06 Score=58.84 Aligned_cols=90 Identities=16% Similarity=-0.017 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc----HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHH
Q 018924 50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALD----WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125 (349)
Q Consensus 50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 125 (349)
.+..+...+...|++++|...|++.. +.. |+ ...+..+..+|...|++++|...+++..+. .|+...+|..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 104 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL-GLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH-TSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH-HHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence 33334444444444444444444443 211 22 233334444444444444444444444432 1222234444
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 018924 126 ILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~ 144 (349)
+..++...|++++|...|+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~ 123 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQ 123 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4444444444444444444
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.1e-06 Score=60.79 Aligned_cols=100 Identities=10% Similarity=-0.131 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc----hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHH
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH----VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVE 265 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~ 265 (349)
.+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|.+.+++..+. .| +..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~ 100 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-------DGGDVK 100 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TSCCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------CccCHH
Confidence 34444444555555555555555554432 22 344444555555555555555555555532 22 344
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924 266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299 (349)
Q Consensus 266 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (349)
.+..+..++...|++++|...|++.....+.+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4445555555555555555555555554443333
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=1.1e-06 Score=61.19 Aligned_cols=87 Identities=20% Similarity=0.115 Sum_probs=33.0
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH
Q 018924 163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242 (349)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 242 (349)
.+.+.|++++|...++...+.. +.+...|..+..++...|++++|...|++..+..+. +...+..+..++...|++++
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3333444444444444433322 222333333333444444444444444443333221 22333333334444444444
Q ss_pred HHHHHHHHH
Q 018924 243 AVEAMKKVL 251 (349)
Q Consensus 243 a~~~~~~~~ 251 (349)
|+..+++++
T Consensus 104 A~~~~~~al 112 (121)
T 1hxi_A 104 ALASLRAWL 112 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=1.3e-06 Score=60.80 Aligned_cols=97 Identities=15% Similarity=0.002 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHH
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAA 269 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ 269 (349)
.+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..|+++++. .| +...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML-------DPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHH
Confidence 4556777888999999999999999886643 6778888889999999999999999999854 56 5677888
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 270 CLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 270 ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
+..++...|++++|...++.+.+..|
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 88889999999999999998887654
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=4.9e-06 Score=60.62 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc----hhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV----NSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
++..+...+...|++++|...+++..+....... ..++..+...+...|++++|...++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555566666666666666555443211110 0245555555555666666665555
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.46 E-value=3.2e-07 Score=80.13 Aligned_cols=123 Identities=15% Similarity=0.027 Sum_probs=85.4
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL 167 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (349)
..+...+.+.|++++|.+.|++..+. .|+...+|..+..+|.+.|++++|+..++......+.+...+..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33445567788888888888888774 4544468888888888888888888888844444455567788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCcHHHHHHHHH
Q 018924 168 DDLESAEKIFEEWESQALCYDTRIPNFLIDV--YCRNGLLEKAENLVN 213 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 213 (349)
|++++|.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888887753 2334455555555 677788888888777
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=1.2e-05 Score=56.30 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=49.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc--hhhHHHHHHH
Q 018924 159 NVISSLLKLDDLESAEKIFEEWESQALCYDT---RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATG 233 (349)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~ 233 (349)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|++..+..+... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34444555566666666666555532 1122 2444555556666666666666666555432210 3345555556
Q ss_pred HhcCCCHHHHHHHHHHHHHH
Q 018924 234 YRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~ 253 (349)
+...|++++|...|+.+...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666543
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.45 E-value=6.7e-06 Score=71.48 Aligned_cols=124 Identities=14% Similarity=-0.009 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-------------hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 018924 84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-------------NSAYNVILTLYGKYGKKDDVLRIWELYKKAV 150 (349)
Q Consensus 84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (349)
...|..+...+.+.|++++|...|++..+..+.... ..+|..+..+|.+.|++++|+..++......
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345566777777777777777777777664332210 1345555555555555555555555333333
Q ss_pred cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924 151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208 (349)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 208 (349)
+.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555554432 22333444444444444444443
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=9.6e-06 Score=56.75 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch---hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC----H
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV---KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS----V 264 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~ 264 (349)
+..+...+...|++++|...|+.+.+..+. +. ..+..+..++...|++++|...|+++... .|+ .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-------YPTHDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTSTTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------CCCCcccH
Confidence 445677888999999999999999986533 23 47778889999999999999999999965 443 5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchh
Q 018924 265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300 (349)
Q Consensus 265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 300 (349)
..+..+..++...|++++|...|+.+....|.+...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 677888889999999999999999998876655443
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=1.6e-05 Score=57.29 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHc-------CcccchhhH----HHHHHHHhcCCCHHHHHHHHHHHHHHhccccc
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLK-------GREIHVKSW----YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK 259 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 259 (349)
.|+.+..++.+.|++++|...+++.++. ++. +...| .....++...|++++|+..|++.++..+...+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 6777777888888888888888877774 432 45567 78888899999999999999999887666667
Q ss_pred CCCCHHHHHHHH
Q 018924 260 WKPSVESLAACL 271 (349)
Q Consensus 260 ~~p~~~~~~~ll 271 (349)
+.+........+
T Consensus 138 ~~~~~~~~~~~~ 149 (159)
T 2hr2_A 138 ETPGKERMMEVA 149 (159)
T ss_dssp CCTTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655544444
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=4.8e-06 Score=72.40 Aligned_cols=88 Identities=8% Similarity=-0.064 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
.+|..+..+|.+.|++++|+..+++..+. .|+...+|..+..+|...|++++|+..|+......+.+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45555666666666666666666665553 2333345666666666666666666666633333333444555555555
Q ss_pred hccCCHHHHH
Q 018924 165 LKLDDLESAE 174 (349)
Q Consensus 165 ~~~~~~~~a~ 174 (349)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=1.3e-06 Score=60.39 Aligned_cols=86 Identities=9% Similarity=-0.005 Sum_probs=39.9
Q ss_pred cCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHH
Q 018924 26 TGNFEKLDSLMHEMEENGI--TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA 103 (349)
Q Consensus 26 ~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 103 (349)
.|++++|+..|++..+.+. +-+...+..+..++...|++++|...+++.. +... -+..++..+..++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3455555555555554321 1122344555555555555555555555544 2222 2344444555555555555555
Q ss_pred HHHHHHHHHh
Q 018924 104 LAMLKKSEEQ 113 (349)
Q Consensus 104 ~~~~~~~~~~ 113 (349)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=6.1e-06 Score=60.56 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=38.6
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
..|..+..+|.+.|++++|...++...+.++. +...|..+..+|...|++++|...|++.+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 45555666666666666666666666664432 455566666666666666666666666664
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.36 E-value=2e-06 Score=75.12 Aligned_cols=126 Identities=19% Similarity=0.080 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924 51 YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY 130 (349)
Q Consensus 51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (349)
+..+...+.+.|++++|.+.+++.. +... .+..+|..+..+|.+.|++++|++.+++..+. .|+...+|..+..+|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAI-ELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3344556778899999999999988 4333 45788999999999999999999999999884 555557899999999
Q ss_pred hhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH--HhccCCHHHHHHHHHHH
Q 018924 131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS--LLKLDDLESAEKIFEEW 180 (349)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~ 180 (349)
...|++++|++.|+......+.+...+..+..+ +.+.|++++|.+.+++.
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999994444444445566666555 77889999999888753
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.35 E-value=1.1e-06 Score=60.66 Aligned_cols=85 Identities=16% Similarity=0.026 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924 167 LDDLESAEKIFEEWESQA--LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 244 (349)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 1222334455555555555555555555555554332 3444555555555555555555
Q ss_pred HHHHHHHH
Q 018924 245 EAMKKVLA 252 (349)
Q Consensus 245 ~~~~~~~~ 252 (349)
+.+++.+.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=9.1e-06 Score=68.46 Aligned_cols=123 Identities=15% Similarity=0.071 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcC
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENG--------------ITY-DRYTYCTRLSAYADASDHEGIDKILTMMEAD 77 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 77 (349)
...|..+...+.+.|++++|+..|++.++.- ..| +..+|..+..++.+.|++++|+..+++.. +
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al-~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL-E 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-H
Confidence 3457778888888999999999888887620 111 23455556666666666666666666665 3
Q ss_pred CCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924 78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139 (349)
Q Consensus 78 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (349)
... .+...|..+..+|...|++++|++.|++..+. .|+...++..+..++...++.+++
T Consensus 302 ~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 302 IDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 322 34555556666666666666666666666553 333324555555555555544444
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=1.6e-05 Score=58.26 Aligned_cols=64 Identities=17% Similarity=0.047 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (349)
..|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++.....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 456666666667777777777777666653 3345566666777777777777777777766643
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.29 E-value=1.4e-05 Score=67.31 Aligned_cols=137 Identities=13% Similarity=-0.036 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..+..+...+.+.|++++|++.|++..+... .. . .....+.+ ....+.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~-~----------~~~~~~~~-------~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GS-R----------AAAEDADG-------AKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HH-H----------HHSCHHHH-------GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cC-c----------cccChHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888887765210 00 0 00000000 001111223444555555
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA 243 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 243 (349)
.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+...++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555432 223444455555555555555555555555543321 333444444444444444444
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.25 E-value=5.4e-06 Score=68.97 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
..+..+...+.+.|++++|...|++.... .|+. .. +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~-~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDD-FM-------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHH-HH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccc-hh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 44556777777888888888888877653 3333 11 112222233222221 12455666666
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHH-HhcCCCHHHH
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-YRQNSQIHKA 243 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a 243 (349)
.+.|++++|...++..++.. +.+...|..+..+|...|++++|...|++..+..+. +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666543 334555666666666677777777666666553321 23333333333 2234455566
Q ss_pred HHHHHHHHHH
Q 018924 244 VEAMKKVLAA 253 (349)
Q Consensus 244 ~~~~~~~~~~ 253 (349)
...|+.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 6666666544
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.19 E-value=7.4e-06 Score=68.17 Aligned_cols=143 Identities=14% Similarity=0.071 Sum_probs=80.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 235 (349)
.+..+...+.+.|++++|...|++..+. .|+.. .+...++.+++...+ ....|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHHHH
Confidence 4666666777777777777777776653 22221 112233333332221 1237788899999
Q ss_pred cCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhh-cC-
Q 018924 236 QNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQ-NG- 311 (349)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~-~g- 311 (349)
+.|++++|+..++++++. .| +...+..+..+|...|++++|...|+.+.+..+.+...+..+. ...+ .+
T Consensus 242 ~~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE-------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999964 45 6788899999999999999999999999988776766776666 4333 33
Q ss_pred -cchHHHHHHHHhC
Q 018924 312 -KSNLETLRELYGN 324 (349)
Q Consensus 312 -~~a~~~~~~m~~~ 324 (349)
+.+...|+.|...
T Consensus 315 ~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 315 YQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHHhhCC
Confidence 7788888888653
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=0.00017 Score=64.32 Aligned_cols=173 Identities=9% Similarity=0.021 Sum_probs=126.4
Q ss_pred cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCC----------HHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924 99 LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK----------KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD 168 (349)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 168 (349)
..++|++.++++... .|+...+|+.-..++...|+ ++++++.++......+-+..+|+.-.-.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 346778888888874 45554678777777777776 888888888555555556677877777777888
Q ss_pred --CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC--------
Q 018924 169 --DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG-LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN-------- 237 (349)
Q Consensus 169 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 237 (349)
+++++.+.++++.+.. +-+...|+--..++.+.| .++++.+.++++.+.++. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6799999999988875 456777877777777788 888999998888887665 677777766665542
Q ss_pred ------CCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhh
Q 018924 238 ------SQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 238 ------~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 282 (349)
+.++++++++++++.. .| |...|..+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~-------~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT-------DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH-------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhh-------CCCCccHHHHHHHHHhcCCCccc
Confidence 5678899999888854 55 56667666666666665443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=2.9e-05 Score=67.58 Aligned_cols=88 Identities=7% Similarity=-0.039 Sum_probs=40.3
Q ss_pred HhhcCcHHHHHHHHHHHHHhh------cCCcchhhHHHHHHHHhhcCCHHHHHHHHHHH----HhhccCC----hhhHHH
Q 018924 94 YGKVGLLDKALAMLKKSEEQI------KGAKVNSAYNVILTLYGKYGKKDDVLRIWELY----KKAVKVL----NNGYRN 159 (349)
Q Consensus 94 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~----~~~~~~ 159 (349)
+...|++++|+.++++..+.. -.|+...+++.|...|...|++++|+.+++.. ..-..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334556666665555554321 01222234555555555555555555555511 1111111 123445
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 018924 160 VISSLLKLDDLESAEKIFEEWE 181 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~ 181 (349)
+...|...|++++|..++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555554443
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.15 E-value=0.00022 Score=63.61 Aligned_cols=169 Identities=7% Similarity=-0.118 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC----------HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 018924 134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD----------LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG 203 (349)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 203 (349)
...++|++.++......+-+...|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 344677888885444445555667776666766666 899999999999875 556778887777888888
Q ss_pred --cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhc--
Q 018924 204 --LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS-QIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDE-- 277 (349)
Q Consensus 204 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~-- 277 (349)
+++++...++++.+.+++ |...|+.-...+.+.| .++++++.++++++ ..| |...|......+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-------~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-------RNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-------TTCCCHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH-------HCCCCccHHHHHHHHHHhhcc
Confidence 779999999999998765 7888988888888888 89999999999984 456 667777766666553
Q ss_pred ------------CChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC
Q 018924 278 ------------GDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG 311 (349)
Q Consensus 278 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g 311 (349)
+.++++.+.++.+....|.+...|.... .+.+.+
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 5578899999999988888889998888 776666
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.14 E-value=3e-05 Score=67.51 Aligned_cols=131 Identities=9% Similarity=-0.059 Sum_probs=97.4
Q ss_pred HHhccCCHHHHHHHHHHHHhc---CCCC----CcchHHHHHHHHHhcCcHHHHHHHHHHHHHc-----Cc-ccc-hhhHH
Q 018924 163 SLLKLDDLESAEKIFEEWESQ---ALCY----DTRIPNFLIDVYCRNGLLEKAENLVNHEKLK-----GR-EIH-VKSWY 228 (349)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 228 (349)
.+...|++++|..++++.++. -+.+ ...+++.|..+|...|++++|..++++..+- |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456889999999999887752 1122 2356889999999999999999999987642 21 122 34688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccccC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW-KPS-VESLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
.|...|...|++++|+.+++++++-.....|- .|+ ..+...+-.++...+.+++|+.+++.+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988653222232 232 345566667788899999999999988763
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=4.8e-06 Score=56.51 Aligned_cols=88 Identities=8% Similarity=-0.018 Sum_probs=49.0
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC------
Q 018924 190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS------ 263 (349)
Q Consensus 190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~------ 263 (349)
..+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|++.+++++ .+.|+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~ 76 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGL-------RYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------TSCSSTTSHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------HhCCCccHHHH
Confidence 34455555666666666666666666654332 45556666666666666666666666666 33443
Q ss_pred -HHHHHHHHHHHHhcCChhhHHH
Q 018924 264 -VESLAACLDYFKDEGDIGGAEN 285 (349)
Q Consensus 264 -~~~~~~ll~~~~~~g~~~~a~~ 285 (349)
...+..+..++...|+.+.|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHh
Confidence 3334444444445555444443
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=8.9e-05 Score=53.39 Aligned_cols=58 Identities=12% Similarity=-0.035 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc-----c-----hhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-----V-----NSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+......+.+.|++++|+..|++..+..+..+ . ..+|+.+..++.+.|++++|+..++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455566666777777777766665433210 0 0145555555555555555555555
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.04 E-value=4.2e-05 Score=52.31 Aligned_cols=80 Identities=14% Similarity=0.036 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 018924 31 KLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS 110 (349)
Q Consensus 31 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 110 (349)
+|+..|++..+... .+...+..+..++...|++++|...+++.. ..+. .+...|..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556666655432 245566666666666677777766666665 3222 33455666666666666776666666666
Q ss_pred HHh
Q 018924 111 EEQ 113 (349)
Q Consensus 111 ~~~ 113 (349)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=8.7e-06 Score=55.20 Aligned_cols=95 Identities=7% Similarity=-0.006 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc-c----HH
Q 018924 11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL-D----WV 85 (349)
Q Consensus 11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~ 85 (349)
++...|..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...+++.. +..... + ..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTAEHVAIRSK 79 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSSTTSHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCccHHHHHHH
Confidence 3566777788888888888888888888877642 256677778888888888888888888877 333211 1 33
Q ss_pred HHHHHHHHHhhcCcHHHHHHHH
Q 018924 86 IYATVGNGYGKVGLLDKALAML 107 (349)
Q Consensus 86 ~~~~li~~~~~~g~~~~a~~~~ 107 (349)
.+..+..++...|+.+.|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4444555555555544444333
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.95 E-value=0.00011 Score=50.20 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
|...+++..+.. +.+...+..+...|...|++++|...|++..+..+. +...|..+..+|...|++++|...|++.++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555543 334555666666666777777777777766665432 445666666667777777777777776664
Q ss_pred H
Q 018924 253 A 253 (349)
Q Consensus 253 ~ 253 (349)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=0.00027 Score=50.12 Aligned_cols=88 Identities=11% Similarity=-0.076 Sum_probs=38.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHH
Q 018924 195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ----NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC 270 (349)
Q Consensus 195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 270 (349)
|...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|.++|++..+. + +...+..|
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g---~~~a~~~L 99 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----N---DQDGCLIL 99 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T---CHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----C---CHHHHHHH
Confidence 3333333444444444444444432 33334444444443 44455555555554432 2 23333344
Q ss_pred HHHHHh----cCChhhHHHHHHHHhhC
Q 018924 271 LDYFKD----EGDIGGAENFIELLNDK 293 (349)
Q Consensus 271 l~~~~~----~g~~~~a~~~~~~~~~~ 293 (349)
-..|.. .++.++|..+|+...+.
T Consensus 100 g~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 100 GYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 444444 44455555555444444
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=0.00044 Score=49.02 Aligned_cols=87 Identities=13% Similarity=-0.030 Sum_probs=41.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR 235 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 235 (349)
+...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|..+|++..+.| ++..+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333334444444555554444432 23334444444444 445555555555555443 3334444444444
Q ss_pred c----CCCHHHHHHHHHHHHH
Q 018924 236 Q----NSQIHKAVEAMKKVLA 252 (349)
Q Consensus 236 ~----~~~~~~a~~~~~~~~~ 252 (349)
. .+++++|.++|++..+
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHH
Confidence 4 4555555555555554
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=0.00011 Score=47.52 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhH
Q 018924 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ 301 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 301 (349)
+...+..+...+...|++++|...|++.++. .| +...+..+..++...|++++|...+++.....+.+...+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 3455666777777778888888888877754 33 456677777777778888888888877777666666666
Q ss_pred HHHh-hhhh
Q 018924 302 DKLL-DNVQ 309 (349)
Q Consensus 302 ~~l~-~~~~ 309 (349)
..+. .+.+
T Consensus 81 ~~l~~~~~~ 89 (91)
T 1na3_A 81 QNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 6655 5443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.90 E-value=2.8e-05 Score=55.89 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=67.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc----------HHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924 166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL----------LEKAENLVNHEKLKGREIHVKSWYYLATGYR 235 (349)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 235 (349)
+.+.+++|.+.++...+.. +.+...|..+..++...++ +++|...|++..+.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445666666666666653 4455566666666666554 45888888888875543 5567777888777
Q ss_pred cC-----------CCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHH
Q 018924 236 QN-----------SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273 (349)
Q Consensus 236 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 273 (349)
.. |++++|++.|+++++ +.|+...|...+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~-------l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD-------EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHH
Confidence 66 489999999999994 48877666555543
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.89 E-value=0.00012 Score=48.62 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=38.4
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
+...+..+..+|...|++++|...|++..+..+. +...|..+..+|...|++++|.+.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555666666666666666666666654432 344566666666666666666666666654
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.88 E-value=0.00022 Score=46.05 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+..+...+...|++++|...|++..+. .|+...++..+..++...|++++|...++
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444444444444432 12221334444444444444444444444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.81 E-value=0.00022 Score=47.30 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+...+..+..+|...|++++|+..|++..+. .|+...+|..+..+|...|++++|...|+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455666667777777777777777776664 33333566777777777777777777766
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.68 E-value=0.00018 Score=51.68 Aligned_cols=38 Identities=3% Similarity=-0.105 Sum_probs=18.9
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK 136 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (349)
.+.+++|.+.+++..+. .|+...+|+.+..++...+++
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhccc
Confidence 34455555555555543 333334555555555555443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.46 E-value=0.0054 Score=50.64 Aligned_cols=48 Identities=8% Similarity=-0.074 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHHh--hc---CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHh
Q 018924 82 LDWVIYATVGNGYG--KV---GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG 131 (349)
Q Consensus 82 ~~~~~~~~li~~~~--~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (349)
.+...|...+.+.. .. ....+|..+|++..+. .|+...+|..+..+|.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDI 244 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34455555554432 22 2346788888888874 5555445555554443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.34 E-value=0.011 Score=48.95 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=29.7
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.++.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444444444455555555555555433 344444444444445555555555555554
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.29 E-value=0.0019 Score=55.22 Aligned_cols=62 Identities=13% Similarity=-0.011 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHh-----cCC-CC-CcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924 155 NGYRNVISSLLKLDDLESAEKIFEEWES-----QAL-CY-DTRIPNFLIDVYCRNGLLEKAENLVNHEK 216 (349)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 216 (349)
.+++.+..+|...|++++|..++++.++ .|. .| ...+++.|...|...|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3455666666666666666666655543 110 11 12346666666666666666666666554
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.25 E-value=0.0014 Score=43.06 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 162 SSLLKLDDLESAEKIFEEWESQALCYDTR-IPNFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
..+...|++++|...++...+.. +.+.. .+..+..+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33445555555555555555432 22333 4445555555555555555555555543
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.0053 Score=52.60 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=55.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhcC--CCCC----ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh------hcCCcchhh
Q 018924 55 LSAYADASDHEGIDKILTMMEAD--PNVA----LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------IKGAKVNSA 122 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~ 122 (349)
+..+.+.|++++|+.++++.... .-+. ....+++.|...|...|++++|+.++++..+. ...|+...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667777777777766521 1111 22455677777777777777777777766542 112334356
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 018924 123 YNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
++.|...|...|++++|+.+++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 7777777777777777777776
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.0045 Score=52.97 Aligned_cols=84 Identities=11% Similarity=-0.050 Sum_probs=45.0
Q ss_pred cCChHHHHHHHHHhhc--CC----CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh-----h-cCCcchhhHHHHHH
Q 018924 61 ASDHEGIDKILTMMEA--DP----NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-----I-KGAKVNSAYNVILT 128 (349)
Q Consensus 61 ~~~~~~a~~~~~~~~~--~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~l~~ 128 (349)
.|++++|..++++... +. ..+....+++.|..+|...|++++|+.++++..+. | ..|+...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3556666666555431 11 11112345566666666666666666666665432 1 12333345666666
Q ss_pred HHhhcCCHHHHHHHHH
Q 018924 129 LYGKYGKKDDVLRIWE 144 (349)
Q Consensus 129 ~~~~~~~~~~a~~~~~ 144 (349)
.|...|++++|+.+++
T Consensus 391 ~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 391 LYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHH
Confidence 6666666666666665
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.17 E-value=0.0015 Score=42.92 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=32.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
...+.+.|++++|+..|++..+... .+.. .+..+..++...|++++|...|++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566666666666666665432 1344 55556666666666666666666655
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0037 Score=53.57 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=73.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhc------CCCCCccH
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENG---ITYD----RYTYCTRLSAYADASDHEGIDKILTMMEA------DPNVALDW 84 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~ 84 (349)
..+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.++++... -...+...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34556778899999999999987641 2222 34789999999999999999988887642 12222345
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6688999999999999999999998754
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.09 E-value=0.061 Score=50.16 Aligned_cols=151 Identities=12% Similarity=0.036 Sum_probs=80.9
Q ss_pred HHhcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHH
Q 018924 23 YYKTGNFEKLDS-LMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD 101 (349)
Q Consensus 23 ~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 101 (349)
....+++++|.+ ++.. ++ +......++..+.+.|.++.|.++.+. |.. -.......|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~~-----~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD--------QDQ-----KFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC--------HHH-----HHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC--------cch-----heehhhhcCCHH
Confidence 345677777766 4411 11 122235566666777777777654421 111 123445677888
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 018924 102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181 (349)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 181 (349)
.|.++.+.+ .+. ..|..+...+.+.++++.|.+.|.... -|..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~-~~W~~la~~al~~~~~~~A~~~y~~~~--------d~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAE-MKWRALGDASLQRFNFKLAIEAFTNAH--------DLESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHT--------CHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcH-hHHHHHHHHHHHcCCHHHHHHHHHHcc--------ChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 777775442 223 578888888888888888887777221 13344444555566555554444444
Q ss_pred hcCCCCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924 182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213 (349)
Q Consensus 182 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 213 (349)
..| -++.-..+|.+.|++++|.+++.
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 332 12333333444555555555443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.04 E-value=0.0088 Score=42.50 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---cHHHHHHHHHHHHHcC-cccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNG---LLEKAENLVNHEKLKG-REIHVKSWYYLATGYRQNSQIHKAVEAM 247 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~ 247 (349)
.+.+.|.+..+.+ .++..+...+..++++.+ +++++..+|+.+.+.+ +.-+...+-.+.-+|.+.|++++|.+++
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4444454444444 245555555556666655 4456666666666544 1112334444555566666666666666
Q ss_pred HHHHH
Q 018924 248 KKVLA 252 (349)
Q Consensus 248 ~~~~~ 252 (349)
+.+++
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66663
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.93 E-value=0.012 Score=39.10 Aligned_cols=71 Identities=13% Similarity=-0.051 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccccc-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924 227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 297 (349)
+..+...+.+.|++..|..+|+.+++....... -.+....+..+..++.+.|+++.|...++++....|.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 334445555555555555555555543111100 11233445555555555555555555555555544433
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.86 E-value=0.12 Score=41.06 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC-CCH
Q 018924 170 LESAEKIFEEWESQALCYD---TRIPNFLIDVYCR-----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN-SQI 240 (349)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~ 240 (349)
...|...+++..+. .|+ ...|..|...|.+ -|+.++|.+.|++..+.++.-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666677777663 444 4578888888888 489999999999998865432466777788888884 889
Q ss_pred HHHHHHHHHHHHH
Q 018924 241 HKAVEAMKKVLAA 253 (349)
Q Consensus 241 ~~a~~~~~~~~~~ 253 (349)
+++.+++++.+..
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999865
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.84 E-value=0.024 Score=40.27 Aligned_cols=90 Identities=13% Similarity=0.031 Sum_probs=70.3
Q ss_pred cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcccccCCC--CHHHHHHHHHHHHhcC
Q 018924 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS---QIHKAVEAMKKVLAAYQTLVKWKP--SVESLAACLDYFKDEG 278 (349)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g 278 (349)
....+.+-|.+..+.+. ++..+...+..++++.+ ++++++.+|+...+. . .| +...+-.+.-+|.+.|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~-~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----G-SKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----S-CHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C-CccchHHHHHHHHHHHHHcc
Confidence 35566777777766665 57888888888999988 677999999999976 3 35 3455566677789999
Q ss_pred ChhhHHHHHHHHhhCCCCCchh
Q 018924 279 DIGGAENFIELLNDKGFIPTDL 300 (349)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~ 300 (349)
++++|.+.++.+.+..|.+...
T Consensus 86 ~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 86 EYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999987766543
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.83 E-value=0.013 Score=38.02 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
++|..++++..+..+. ++.....+...+.+.|++++|+..|++++
T Consensus 26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444443322 33333334444444444444444444444
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.68 E-value=0.058 Score=34.82 Aligned_cols=65 Identities=6% Similarity=-0.058 Sum_probs=43.2
Q ss_pred CccHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 10 ARTTVVYNSMLKLYYKTGN---FEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 10 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
++|...+..+..++...++ .++|..+|++..+.+.. +......+...+.+.|++++|+..|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666666654444 57777777777775432 55566666777777777777777777776
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.55 E-value=0.21 Score=46.71 Aligned_cols=255 Identities=12% Similarity=0.013 Sum_probs=137.3
Q ss_pred HHHhcCChHHHHHHHHHhhcCC-CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc-------CCcc-hhhHHHHH
Q 018924 57 AYADASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-------GAKV-NSAYNVIL 127 (349)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~-~~~~~~l~ 127 (349)
+....|+.++++.++....... .-.+....=..+.-+...+|..+++..++.......- .+.. ..+...|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556777777777776654111 1112233334455666777776778887777655321 0111 01122333
Q ss_pred HHHhhcCCHHHHHHHHH-HHHhhccCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHH--HHHHhc
Q 018924 128 TLYGKYGKKDDVLRIWE-LYKKAVKVLN--NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLI--DVYCRN 202 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~-~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~ 202 (349)
.+|..+++. ++.+.+. ...... +.. ..-.++...+...|+.+....++..+.+.. +..+...+. -++...
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 333444443 3444444 332211 111 112234445667888888888888776532 223333333 344467
Q ss_pred CcHHHHHHHHHHHHHcCcccchhhH--HHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCCh
Q 018924 203 GLLEKAENLVNHEKLKGREIHVKSW--YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI 280 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 280 (349)
|+.+.+..+.+.+... ..|....- .++.-+|+..|+.....++++.+... ...+......+.-++...|+.
T Consensus 538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d------~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD------SNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHTSSSC
T ss_pred CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC------CcHHHHHHHHHHHHhhccCCH
Confidence 8988888888888763 12333222 23455788889987777788888753 223333333333345556777
Q ss_pred hhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHHHHh
Q 018924 281 GGAENFIELLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRELYG 323 (349)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~m~~ 323 (349)
+.+.++++.+...+-+....-..+. +....| .++++++..+..
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7777777766655433333222233 444444 578888888764
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.46 E-value=0.061 Score=35.52 Aligned_cols=21 Identities=5% Similarity=-0.086 Sum_probs=8.7
Q ss_pred HHHHHhhcCcHHHHHHHHHHH
Q 018924 90 VGNGYGKVGLLDKALAMLKKS 110 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~ 110 (349)
|...+.+.|++..|...|+..
T Consensus 11 lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHH
Confidence 334444444444444444433
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.36 E-value=0.14 Score=35.34 Aligned_cols=68 Identities=16% Similarity=0.030 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018924 223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 296 (349)
+.......+..+..+|+-++-.+++..+.. +..|++.....+..+|.+.|+..++.+++.++.+.|.+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK------NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344556666677777777777777777543 45677777778888888888888888888888777654
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.31 E-value=0.079 Score=37.27 Aligned_cols=103 Identities=14% Similarity=0.047 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHHH------HHhcCChHHHHHHHHHhhcCC
Q 018924 12 TTVVYNSMLKLYYKTGNF------EKLDSLMHEMEENGITYDRY-TYCTRLSA------YADASDHEGIDKILTMMEADP 78 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~ 78 (349)
|..+|=..+...-+.|++ ++..++|++.... ++|+.. .|..-+.. +...+++++|.++|+.+. +.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~-~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR-AN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HH
Confidence 677787788877777888 7888888887764 566532 11111111 123367777777777765 22
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC
Q 018924 79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA 117 (349)
Q Consensus 79 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 117 (349)
.-+. ...|......-.+.|+++.|.+++......++.|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2222 5566666666667777777777777777654443
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.27 E-value=0.085 Score=37.12 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
.++.++|.++|+.++.. .-+- ...|....+--.++|++..|++++......++.+.......+
T Consensus 73 i~D~d~aR~vy~~a~~~-----hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN-----CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHCGGGCHHHHHHHHHH-----CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH-----hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 37888888999888765 3333 666666666667889999999999988888776766666655
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.19 E-value=0.11 Score=48.42 Aligned_cols=100 Identities=7% Similarity=0.126 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG 95 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 95 (349)
...++..+.+.|.++.|+++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al 692 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHH
Confidence 3777778888888888887663211 1133456789999999886544 45678999999999
Q ss_pred hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+.|+++.|++.|.++.. |..+...+...|+.+...++-+
T Consensus 693 ~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 99999999999998632 4445555555676666555444
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.26 Score=35.91 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=53.5
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE 171 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (349)
......|+++.|.++.+++ .+. ..|..|.......|+++-|.+.|... .-+..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~-~~Wk~Lg~~AL~~gn~~lAe~cy~~~--------~D~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDS-ITWERLIQEALAQGNASLAEMIYQTQ--------HSFDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHT--------TCHHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCH-HHHHHHHHHHHHcCChHHHHHHHHHh--------CCHHHHHHHHHHhCCHH
Confidence 4445566666666665553 122 46666666666666666666666611 11334444455556655
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924 172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 213 (349)
...++-+.....| -++.-...+.-.|+++++.++|.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 5554444444333 23334444455566666666653
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.02 E-value=0.21 Score=34.41 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924 122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA 184 (349)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 184 (349)
..+..+..+...|.-+.-.+++.-.....+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444444444444444444442112333344444444444444444444444444444444
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.32 Score=35.49 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=60.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHH
Q 018924 22 LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD 101 (349)
Q Consensus 22 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 101 (349)
...+.|+++.|.++.+.+ -+...|..|.......|+++-|...|.+.. + +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-S---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-C---------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-C---------HHHHHHHHHHhCCHH
Confidence 345567777777776554 256677777777777777777777777665 2 233445555566665
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
...++-+..... .-++.....+...|+++++.++|.
T Consensus 78 ~L~kla~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 78 KLSKMQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHH
Confidence 555444433322 124455555666677777777765
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.59 E-value=0.26 Score=33.65 Aligned_cols=89 Identities=11% Similarity=-0.019 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH---HHHHHHHHHHHhcccccCCC--CHHHHHHHHHHHHhc
Q 018924 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK---AVEAMKKVLAAYQTLVKWKP--SVESLAACLDYFKDE 277 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~ 277 (349)
..+..+.+-|......|. ++..+--.+..++.+..+... ++.++...... + .| .....-.|.-++.+.
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~-~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----G-SKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----S-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C-CcchHHHHHHHHHHHHHHh
Confidence 334444555554444333 445554555556666555444 66666665532 1 13 222333344456666
Q ss_pred CChhhHHHHHHHHhhCCCCCc
Q 018924 278 GDIGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~ 298 (349)
|++++|.+.++.+.+..|.+.
T Consensus 88 g~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCCH
Confidence 666666666666666655443
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.53 E-value=7.5e-07 Score=74.91 Aligned_cols=241 Identities=12% Similarity=0.054 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN 92 (349)
Q Consensus 13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 92 (349)
...|..|..+....+++.+|++-|-+. -|+..|..++.+..+.|.+++-...+...+ +..-.|... +.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~ke~~ID--teLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKARESYVE--TELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCCSTTTT--HHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcccccH--HHHHH
Confidence 456778888888888888887766221 266778889999999999999888886655 433334333 47899
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHh---------------------hcc
Q 018924 93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK---------------------AVK 151 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------~~~ 151 (349)
+|++.++..+-++++. .|+. .-...+..-|...|.++.|.-+|..... .-.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~-A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSS-SCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHhhCcHHHHHHHHc-------CCCc-ccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988765444331 2444 4456666666666666666655541100 001
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924 152 VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA 231 (349)
Q Consensus 152 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 231 (349)
.++.||-.+-.+|...+.+..|.-.--.+.- .+| -...++..|-..|.+++-..+++.-... -+.....|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 3445666666666666666555444333332 111 1223555566667777666666655521 123555666666
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924 232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE 288 (349)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 288 (349)
-.|++- ++++..+.++..-. +.| .--+|++|.+..-|.++.-++.
T Consensus 271 ILYsKY-~PeKlmEHlklf~s--------riN---ipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWS--------RVN---IPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSS--------SSC---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHH--------hcc---HHHHHHHHHHHhhHHHHHHHHh
Confidence 666655 34444443333211 111 1245777777777777766554
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.30 E-value=0.36 Score=32.97 Aligned_cols=93 Identities=9% Similarity=0.004 Sum_probs=60.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHhhcCCCCC-ccHHHHHHHHHHHhhcC
Q 018924 23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG---IDKILTMMEADPNVA-LDWVIYATVGNGYGKVG 98 (349)
Q Consensus 23 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 98 (349)
-........+.+-|......|. |+..+--.+.-++++..+... ++.+++.+. +.+.+ -.....-.|.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHhh
Confidence 3334445566666666655554 566665556667777766555 888888887 44321 23444456778888999
Q ss_pred cHHHHHHHHHHHHHhhcCCcc
Q 018924 99 LLDKALAMLKKSEEQIKGAKV 119 (349)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~ 119 (349)
++++|.+.++.+.+. .|+.
T Consensus 89 ~Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp CHHHHHHHHHHHHHH--CTTC
T ss_pred hHHHHHHHHHHHHHh--CCCC
Confidence 999999999888874 5544
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.10 E-value=0.99 Score=35.93 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CcHHHHHHHHHHHHHcCcc--cchh
Q 018924 154 NNGYRNVISSLLKL-----DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN-GLLEKAENLVNHEKLKGRE--IHVK 225 (349)
Q Consensus 154 ~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~ 225 (349)
...|..+...|.+. |+.++|.+.|++.++.+..-+..++......+++. |+.+.+.+.+++.....+. |+..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 45788999999884 99999999999999965333477788888889885 9999999999999997766 5544
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKV 250 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~ 250 (349)
..+.+ .-.+|..++.++
T Consensus 279 lan~~--------~q~eA~~LL~~~ 295 (301)
T 3u64_A 279 LLVIL--------SQKRARWLKAHV 295 (301)
T ss_dssp HHHHH--------HHHHHHHHHHTH
T ss_pred HHHHH--------HHHHHHHHHHHh
Confidence 44433 335555555554
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.98 E-value=5.4e-05 Score=63.99 Aligned_cols=211 Identities=13% Similarity=0.153 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL 164 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 164 (349)
.+|..|..++.+.|++.+|++.|-+ .+.+..|..++.+..+.|.+++-+.++.|.....+ ++..=+.++-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHH
Confidence 3467788888888877777765533 22225688888888888888888888886554433 333445788888
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc--------------------Ccccch
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK--------------------GREIHV 224 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~ 224 (349)
++.++..+.++++. .||..-...+.+-|...|.++.|.-+|..+... .-.-++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 88887665444332 455555666677777777777776666543211 001255
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHH
Q 018924 225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKL 304 (349)
Q Consensus 225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 304 (349)
.||.-+-.+|...+.+.-|.-.--.++- .| .....++..|-..|-+++-..+++............|+-|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv--------ha--deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTEL 269 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV--------HA--DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 269 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC--------CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc--------cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 6777777777777766655443333321 12 2233455666777777777777776665444566677777
Q ss_pred h-hhhhcC-cchHHHHHH
Q 018924 305 L-DNVQNG-KSNLETLRE 320 (349)
Q Consensus 305 ~-~~~~~g-~~a~~~~~~ 320 (349)
. .|++.. ++-++.++-
T Consensus 270 aILYsKY~PeKlmEHlkl 287 (624)
T 3lvg_A 270 AILYSKFKPQKMREHLEL 287 (624)
T ss_dssp HHHHHSSCTTHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 7 777776 666555543
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.96 E-value=1.6 Score=37.52 Aligned_cols=259 Identities=9% Similarity=0.031 Sum_probs=147.3
Q ss_pred cCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH--HHHHHHHhhcC
Q 018924 26 TGNFEKLDSLMHEMEEN-----GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY--ATVGNGYGKVG 98 (349)
Q Consensus 26 ~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g 98 (349)
.|+++.|++.+..+.+. +..-.......++..|...++++...+.+..+..+.|..+...+. ..++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888887666542 233355678889999999999999988888776455654444332 22233332333
Q ss_pred cHHH--HHHHHHHHHH--hh-cCCc--chhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh-----hhHHHHHHHHh
Q 018924 99 LLDK--ALAMLKKSEE--QI-KGAK--VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN-----NGYRNVISSLL 165 (349)
Q Consensus 99 ~~~~--a~~~~~~~~~--~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~-----~~~~~li~~~~ 165 (349)
..+. -..+.+.+.. .| +... .......|...+...|++.+|..++. ....-...+. ..+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3222 1112211110 00 0010 11234678888999999999999999 4333222222 35667788899
Q ss_pred ccCCHHHHHHHHHHHHh----cCCCCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHHc-CcccchhhHH----HHHHHH
Q 018924 166 KLDDLESAEKIFEEWES----QALCYD--TRIPNFLIDVYCRNGLLEKAENLVNHEKLK-GREIHVKSWY----YLATGY 234 (349)
Q Consensus 166 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~li~~~ 234 (349)
..+++..|..++..+.. ....|+ ...+...+..+...+++.+|.+.|.++... ...-|...+. .++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999988753 111222 234566777778889999998888877542 1111222221 122222
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhc--CChhhHHHHHHH
Q 018924 235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE--GDIGGAENFIEL 289 (349)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~ 289 (349)
.-.+..+.-..++...... ..-++...+..++.+|... .+++...+.|..
T Consensus 269 iLa~~~~~~~~ll~~~~~~-----~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQND-----NNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHH-----SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HhCCCCchHHHHHHHHhhc-----ccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 2222222223333443333 3345667788888888653 344555554443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.28 Score=44.91 Aligned_cols=125 Identities=8% Similarity=-0.090 Sum_probs=77.3
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHhcCCCCCcchH--HHHHHHHHhcC-cHHHHHHHHHHHHHc------Cccc-ch--
Q 018924 158 RNVISSLLKLDD-LESAEKIFEEWESQALCYDTRIP--NFLIDVYCRNG-LLEKAENLVNHEKLK------GREI-HV-- 224 (349)
Q Consensus 158 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~-- 224 (349)
..++..+...++ .+.|..+++++.+.. |...++ ..++..+...+ +--+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555555 577888888887753 322222 22333222222 222344444443321 1111 11
Q ss_pred --------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924 225 --------KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 225 --------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 291 (349)
.....=...|...|+++-|+++-+++.. ..| +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~-------~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE-------LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh-------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1122223456778999999999999984 477 47899999999999999999999998884
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.38 Score=44.09 Aligned_cols=127 Identities=14% Similarity=0.011 Sum_probs=75.8
Q ss_pred HHHHHHHhhcCc-HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC-CHHHHHHHHH-HHH------hhccCCh----
Q 018924 88 ATVGNGYGKVGL-LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG-KKDDVLRIWE-LYK------KAVKVLN---- 154 (349)
Q Consensus 88 ~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~-~~~------~~~~~~~---- 154 (349)
.+++..+...|+ .+.|..+|+++....+.... .....++..+...+ +--+|.+++. ... ...++..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 455666655666 57788888888775332222 12223333333332 2224444444 211 1111111
Q ss_pred -------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924 155 -------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK 216 (349)
Q Consensus 155 -------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 216 (349)
.....=...|...|+++.|+++-++....- +.+-.+|..|..+|...|+++.|.-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222445667899999999998888752 4456789999999999999999999888774
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.86 E-value=0.18 Score=42.48 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH
Q 018924 193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL 267 (349)
Q Consensus 193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 267 (349)
..++..+...|++++|...+..+....+ .+...|..+|.++.+.|+..+|++.|+...+...+..|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3466667778888888888887776543 3666788888888888888888888888776555556888877653
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.78 E-value=2.8 Score=39.49 Aligned_cols=261 Identities=12% Similarity=0.009 Sum_probs=138.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHhhcCCC-C-----CccHHHHHHHHHHH
Q 018924 23 YYKTGNFEKLDSLMHEMEENGITYDRY--TYCTRLSAYADASDHEGIDKILTMMEADPN-V-----ALDWVIYATVGNGY 94 (349)
Q Consensus 23 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-----~~~~~~~~~li~~~ 94 (349)
....|+.++++.++......+-..+.. .-..+.-+.+..|..+++..++.......+ + .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445667777766666544321112322 223333345566666667776665441211 0 01122223344444
Q ss_pred hhcCc-HHHHHHHHHHHHHhhcCCcc-hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924 95 GKVGL-LDKALAMLKKSEEQIKGAKV-NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES 172 (349)
Q Consensus 95 ~~~g~-~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 172 (349)
+-.|. -+++.+.+..+.... .... ..+-.+|...++..|+.+....++.........+..-...+.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 44443 245566665555421 1111 01223445556677888877777773222222222223334444557889999
Q ss_pred HHHHHHHHHhcCCCCCcchH--HHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924 173 AEKIFEEWESQALCYDTRIP--NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV 250 (349)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 250 (349)
+..+++.+.... .|....- .++..+|+..|+.....++++.+.+.. ..++.....+.-++...|+.+.+.+++..+
T Consensus 543 ~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 543 ADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp GHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 998888887632 2222211 234556778899888888999888642 234444444555666677766666766655
Q ss_pred HHHhcccccCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHHHhh
Q 018924 251 LAAYQTLVKWKPSVESLAACLDYFKDEGDI-GGAENFIELLND 292 (349)
Q Consensus 251 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 292 (349)
.+ ...|....-..+.-+....|.. .++..++..+..
T Consensus 621 ~~------~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 621 SK------SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GG------CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred Hh------cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 43 3355555444555555555554 467777777754
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.48 E-value=0.5 Score=30.54 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
+.-+..+-++.+... .+.|++....+.+++|.+.+|+..|.++|+-++.+-......|..++
T Consensus 25 D~~e~rrglN~l~~~-----DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGY-----DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTS-----SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhcc-----ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 444555556665554 66777777777777777777777777777777665333344565554
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.29 E-value=1.3 Score=43.31 Aligned_cols=145 Identities=9% Similarity=0.022 Sum_probs=88.3
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC----------------
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL---------------- 153 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 153 (349)
++..+.+.+..+-+.++..- ...+. ..--.+..++...|++++|.+.|+....++..+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~-~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDP-IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCH-HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 44445555555555443322 22233 344566778888999999999987322222111
Q ss_pred -------hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924 154 -------NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT----RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222 (349)
Q Consensus 154 -------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 222 (349)
..=|..++..+-+.+.++.+.++-....+...+.+. ..|..+...+...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 012556677777788888888777766654222121 25777888888889999998888877765443
Q ss_pred chhhHHHHHHHHhcCCCHHH
Q 018924 223 HVKSWYYLATGYRQNSQIHK 242 (349)
Q Consensus 223 ~~~~~~~li~~~~~~~~~~~ 242 (349)
......|+..+|..|..+.
T Consensus 971 -~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHhCCChhh
Confidence 3456666666666554433
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.10 E-value=2 Score=35.01 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=13.2
Q ss_pred HHHhcCChhhHHHHHHHHh
Q 018924 273 YFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 273 ~~~~~g~~~~a~~~~~~~~ 291 (349)
-|...+++..|..+++...
T Consensus 196 ~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3556788888888765544
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.56 E-value=3.2 Score=35.60 Aligned_cols=243 Identities=10% Similarity=0.029 Sum_probs=141.6
Q ss_pred CChHHHHHHHHHhhc----CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHh----hc
Q 018924 62 SDHEGIDKILTMMEA----DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG----KY 133 (349)
Q Consensus 62 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 133 (349)
|+++.|++.+-.+.+ ..+...+......++..|...|+++...+.+.-+........ .+...+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 567777776655431 344556677788899999999999999888776654322222 23344444332 23
Q ss_pred CCHHHHHH--HHHHHHhhccC--------ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-----cchHHHHHHH
Q 018924 134 GKKDDVLR--IWELYKKAVKV--------LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD-----TRIPNFLIDV 198 (349)
Q Consensus 134 ~~~~~a~~--~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~ 198 (349)
...+...+ +.+ ....+.. .......+...+...|++.+|..++..+...-...+ ...+...++.
T Consensus 108 ~~~d~~~~~~~i~-~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTRISVIE-TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHHHHHHH-CCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHH-HHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33332222 222 1111111 112235678888999999999999999864211111 2356677888
Q ss_pred HHhcCcHHHHHHHHHHHHH----cCcccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHH--
Q 018924 199 YCRNGLLEKAENLVNHEKL----KGREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC-- 270 (349)
Q Consensus 199 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l-- 270 (349)
|...+++.+|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++... ....-|...+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~----~~~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT----DAIKSDEAKWKPVLS 262 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----HHHHSCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----ccccCCHHHHHHHHH
Confidence 9999999999999998753 222222 235677777888899999999999998764 1222233322222
Q ss_pred --HHHHHhcCChhhHHHHHHHHhh-CCCCCchhHHHHh-hhhhcC
Q 018924 271 --LDYFKDEGDIGGAENFIELLND-KGFIPTDLQDKLL-DNVQNG 311 (349)
Q Consensus 271 --l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~-~~~~~g 311 (349)
+.+..-.+..+.-..++..... ...++...|..++ +|....
T Consensus 263 ~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~ 307 (445)
T 4b4t_P 263 HIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNE 307 (445)
T ss_dssp HHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhch
Confidence 2222222222222333333222 2234556677788 777665
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.05 E-value=3 Score=33.70 Aligned_cols=178 Identities=11% Similarity=0.045 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHH----
Q 018924 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK---- 175 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~---- 175 (349)
+++.+.-++.-++.|-.-.....|.++..-|.+.+++++|++++... ...+.+.|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHH
Confidence 44445555555554444444456666667777777777777766510 011222333332222
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCcHH-HHHHHHHHHHH----cC--cccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLE-KAENLVNHEKL----KG--REIHVKSWYYLATGYRQNSQIHKAVEAMK 248 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 248 (349)
+++...+.+.+++......++..+.....-+ .=.++++++.+ .| ..-|+.....+...|.+.|++.+|...|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3333444455555555555555544322111 11222233221 11 11255566666677777777776666442
Q ss_pred -----------HHHHHhcccc-cCCCC-HHHH-HHHHHHHHhcCChhhHHHHHHHHh
Q 018924 249 -----------KVLAAYQTLV-KWKPS-VESL-AACLDYFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 249 -----------~~~~~~~~~~-~~~p~-~~~~-~~ll~~~~~~g~~~~a~~~~~~~~ 291 (349)
.|+-...... .-.|. ...| ...+--|...|+...|..+++...
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1111111110 01221 1111 222223557889999999887654
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.89 E-value=0.52 Score=30.49 Aligned_cols=46 Identities=13% Similarity=-0.078 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444455555555566666666666666666666666666666554
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.77 E-value=3 Score=40.71 Aligned_cols=145 Identities=9% Similarity=-0.025 Sum_probs=93.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC----------------
Q 018924 53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG---------------- 116 (349)
Q Consensus 53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---------------- 116 (349)
.++..+...+..+.+.++..... . +...--.+..+|...|++++|.+.|++.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-S-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-C-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-C-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhccccccc
Confidence 45555666777777766555443 2 2222235777888899999999999765210 10
Q ss_pred ------CcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh-----hhHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 018924 117 ------AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NGYRNVISSLLKLDDLESAEKIFEEWESQAL 185 (349)
Q Consensus 117 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 185 (349)
.....-|.-++..+-+.+.++.+.++-+.......++. ..|..+..++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 00102366778888888999999888773322222222 2578889999999999999998877765433
Q ss_pred CCCcchHHHHHHHHHhcCcHH
Q 018924 186 CYDTRIPNFLIDVYCRNGLLE 206 (349)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~~~~ 206 (349)
-......|+...|..|+.+
T Consensus 970 --r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHH
T ss_pred --HHHHHHHHHHHHHhCCChh
Confidence 2345667777777766543
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.68 E-value=1.3 Score=30.38 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924 239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL 305 (349)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 305 (349)
+.-+..+-++.+... .+.|++......+++|.+.+|+..|.++|+-++.+-.+....|..++
T Consensus 68 D~wElrrglN~l~~~-----DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGY-----DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTS-----SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhcc-----ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 344555555665554 77788888888888888888888888888887776444455566665
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.56 E-value=0.64 Score=39.10 Aligned_cols=197 Identities=10% Similarity=-0.059 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh-cCChHHHHHHHHHhh------cCCCCCcc
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGIT-YDRYTYCTRLSAYAD-ASDHEGIDKILTMME------ADPNVALD 83 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~------~~~~~~~~ 83 (349)
+...+..|.-.....|+.-...++.+.+-....+ ....+....+.-+-+ .+.....-..+.... .......|
T Consensus 32 ~~k~~~LL~~L~~~~g~~vsr~~L~~~lW~~~~~~~a~~~L~~~i~rLRk~L~~~~~~~~~i~~~~~~GY~l~~~~~~~D 111 (388)
T 2ff4_A 32 TPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCD 111 (388)
T ss_dssp SHHHHHHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGGBH
T ss_pred ChHHHHHHHHHHhCCCCcccHHHHHHHhCCCCCChhHHHHHHHHHHHHHHhhcccCCCCceEEEEECCEEEEcCCCccch
Confidence 4555555555555667777777777777654321 122333333332221 111100000111111 01122345
Q ss_pred HHHHHHHHHHHh---hcCcHHHHHHHHHHHHHh--hcCCcchhhHHHHHHHHhhcCCHHHH-HHHHH-HHHhhccCChhh
Q 018924 84 WVIYATVGNGYG---KVGLLDKALAMLKKSEEQ--IKGAKVNSAYNVILTLYGKYGKKDDV-LRIWE-LYKKAVKVLNNG 156 (349)
Q Consensus 84 ~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~-~~~~~~~~~~~~ 156 (349)
...|..++..-. ..|+.+.|.+.+++.... |..... .. ...|-.. ..-++ ... ..
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~-~~----------~~~w~~~~r~~l~~~~~-------~a 173 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-LR----------DFQFVEPFATALVEDKV-------LA 173 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-GT----------TSTTHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC-CC----------chhHHHHHHHHHHHHHH-------HH
Confidence 556665554332 357888888888887653 221111 00 0111111 11222 111 13
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH-----cCcccchhhH
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL-----KGREIHVKSW 227 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 227 (349)
...++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|.+.|+.+.+ .|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4456777888999999998888887654 56777888999999999999999999987653 5888877653
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.36 E-value=2.7 Score=30.19 Aligned_cols=26 Identities=4% Similarity=-0.023 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 268 AACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 268 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
--+..||.+.+++++|..+++.+...
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 34667788899999999888766443
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.18 E-value=2.6 Score=28.96 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
++..+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.++
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444443321122333344445555555555555555555
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.86 E-value=2.2 Score=29.31 Aligned_cols=60 Identities=15% Similarity=-0.016 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHH
Q 018924 207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD 272 (349)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~ 272 (349)
+..+-++.+...++.|++......+.+|-+.+++..|.++|+-++. ++.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~------K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD------KAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH------hcCCchhhHHHHHH
Confidence 4455566666667778888888888888888888888888887775 34444555666654
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.18 E-value=3.1 Score=26.82 Aligned_cols=81 Identities=16% Similarity=0.054 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHH
Q 018924 205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE 284 (349)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 284 (349)
.++|..+-+-+...+. ....--+-+..+.+.|++++|..+.+. ...||...|..|-. .+.|-..++.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~---------~c~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNK---------LAYPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTT---------SCCGGGHHHHHHHH--HHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC---------CCCchHHHHHHHHH--HhcccHHHHH
Confidence 4555555555544432 111111222345566666666665544 33566666655543 3566666666
Q ss_pred HHHHHHhhCCCCCc
Q 018924 285 NFIELLNDKGFIPT 298 (349)
Q Consensus 285 ~~~~~~~~~~~~~~ 298 (349)
..+.++...+.|..
T Consensus 90 ~rL~~la~sg~p~~ 103 (116)
T 2p58_C 90 SRLNRLARSQDPRI 103 (116)
T ss_dssp HHHHHHTTCCCHHH
T ss_pred HHHHHHHhCCCHHH
Confidence 66655555554433
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.10 E-value=2.9 Score=26.90 Aligned_cols=53 Identities=11% Similarity=-0.000 Sum_probs=25.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018924 233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI 296 (349)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 296 (349)
.+.+.|++++|..+.+. ...||...|..|-. .+.|-.+++...+.++...+.|
T Consensus 48 SLmNrG~Yq~Al~l~~~---------~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~p 100 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHG---------NPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSSDP 100 (115)
T ss_dssp HHHHTTCHHHHHGGGTT---------CCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCSSH
T ss_pred HHHcchhHHHHHHhcCC---------CCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCCH
Confidence 34455555555554433 33455555544433 2555555555555455444433
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.97 E-value=6.2 Score=33.64 Aligned_cols=60 Identities=8% Similarity=-0.002 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEEN--GITYDRYTYCTRLSAYADASDHEGIDKILTMM 74 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 74 (349)
++..+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445666666666666666666666553 22222345555666666666666666666554
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.93 E-value=4.2 Score=27.94 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=55.3
Q ss_pred CcccchhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 219 GREIHVKSWYYLATGYRQNSQ---IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 219 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
+..|+..+--.+..++.+..+ ..+++.++....+. +..-....+-.|.-++.+.|++++|++..+.+.+..|
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 344666665666677777654 55789999998876 4111345556667789999999999999999999877
Q ss_pred CCch
Q 018924 296 IPTD 299 (349)
Q Consensus 296 ~~~~ 299 (349)
.+..
T Consensus 110 ~N~Q 113 (134)
T 3o48_A 110 NNKQ 113 (134)
T ss_dssp TCHH
T ss_pred CCHH
Confidence 6654
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.34 E-value=5.7 Score=27.66 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=31.1
Q ss_pred CCcchHHHHHHHHHhcCc---HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 187 YDTRIPNFLIDVYCRNGL---LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
|+..+--.+..++.++.. ..++..+++.+...+..-.....-.|.-++.+.|++++|.++.+.++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333334444444443 33455555555544322122233344455566666666666666665
No 260
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=86.63 E-value=9.4 Score=31.49 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC----cchHHHHHHHHhCCCCC
Q 018924 267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG----KSNLETLRELYGNSLAG 328 (349)
Q Consensus 267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g----~~a~~~~~~m~~~~~~p 328 (349)
...++.-|...|+.++|.+.++++.....-...+...+. ++-+.+ +...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 466677777778888888888777542222222333334 444432 34566676666665443
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.10 E-value=4.9 Score=34.28 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=56.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCcHHHHHHHHHHHHH---cCcccchhh--HH
Q 018924 156 GYRNVISSLLKLDDLESAEKIFEEWESQALCY--DTRIPNFLIDVYCRNGLLEKAENLVNHEKL---KGREIHVKS--WY 228 (349)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~ 228 (349)
+...+...|.+.|+++.|.+.+.++...-..+ -...+-.+++.+...+++..+...+.++.. .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667777777777777777777776532222 223455566666777777777777766653 222222211 11
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 229 YLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 229 ~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
.-...+...+++..|...|.++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1222344566777777777776654
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.05 E-value=4.8 Score=31.53 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=42.2
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924 162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG 219 (349)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 219 (349)
....+.|++++++.....-++.. +.|...-..|+..+|-.|++++|.+-++...+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34567788888888777777664 5566677778888888888888888888777643
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.91 E-value=7.8 Score=27.81 Aligned_cols=116 Identities=8% Similarity=-0.046 Sum_probs=55.8
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhh-cCCcc------hhhHHHHHHHHhhcCCHHHHHHHHHH--HHhhccCCh-hhHHH
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQI-KGAKV------NSAYNVILTLYGKYGKKDDVLRIWEL--YKKAVKVLN-NGYRN 159 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~-~~~~~ 159 (349)
-+..+...|.++.|+-+.+.+.... ..++. ..++..+.+++...+++..|...|+. .....-+.. .++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4556666777777777666654421 11110 01456666777777888888877772 122211111 11111
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK 218 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 218 (349)
+.. ....+. ......+...-..+..+|.+.+++++|..+++.+..+
T Consensus 106 ~~~---~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TGN---SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc---cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 100 000000 0011223344445667777778888887777766543
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.87 E-value=4.3 Score=31.80 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=54.2
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHH
Q 018924 197 DVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY 273 (349)
Q Consensus 197 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 273 (349)
....+.|++++|......-++..+. |...-..++.-+|-.|++++|.+-++...+. .+...|...+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH
Confidence 3456789999999999988887654 7777788999999999999999999998865 11222234455555544
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.70 E-value=4.1 Score=31.89 Aligned_cols=16 Identities=6% Similarity=-0.053 Sum_probs=8.8
Q ss_pred HHHHHHHhCCCCCCcc
Q 018924 316 ETLRELYGNSLAGNEE 331 (349)
Q Consensus 316 ~~~~~m~~~~~~p~~~ 331 (349)
++.+-+.+.|..|+..
T Consensus 267 ~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 267 KIAELLCKRGASTDCG 282 (285)
T ss_dssp HHHHHHHHHSSCSCCS
T ss_pred HHHHHHHHcCCCCCcc
Confidence 3444455566666654
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.12 E-value=9.6 Score=26.56 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=54.1
Q ss_pred ccchhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924 221 EIHVKSWYYLATGYRQNSQ---IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP 297 (349)
Q Consensus 221 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 297 (349)
.|+..+--.+..++.+..+ ..+++.+++..... +..-.....-.|.-++.+.|++++|+++.+.+.+..|.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4666666667777777764 55788899998875 321133444556668999999999999999999987766
Q ss_pred ch
Q 018924 298 TD 299 (349)
Q Consensus 298 ~~ 299 (349)
..
T Consensus 111 ~Q 112 (144)
T 1y8m_A 111 KQ 112 (144)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.57 E-value=13 Score=27.67 Aligned_cols=56 Identities=11% Similarity=-0.021 Sum_probs=42.2
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccC
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKV 152 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~ 152 (349)
++...++..+|..|...|+....+.-|......+-..|++.+|.++|+ -...+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444668888888888888877776678888888888888888888888 44445455
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.45 E-value=30 Score=31.10 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHHcCcccchh----hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC
Q 018924 204 LLEKAENLVNHEKLKGREIHVK----SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD 279 (349)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 279 (349)
+.+.|...+....+... .+.. .+..+...+...+...++...+...... .++.....-.+....+.|+
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-------SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-------CCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc-------CCChHHHHHHHHHHHHCCC
Confidence 67888888887765332 1222 2233333444555455666677665432 3343334444444557799
Q ss_pred hhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924 280 IGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYG 323 (349)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~ 323 (349)
++.|...|+.|.........-..-+. ++...| ++|..+|+.+.+
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999888664222222222223 666667 678888877653
No 269
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=81.38 E-value=14 Score=29.78 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHH
Q 018924 88 ATVGNGYGKVGLLDKALAMLKKSE 111 (349)
Q Consensus 88 ~~li~~~~~~g~~~~a~~~~~~~~ 111 (349)
..++.-|...|+.++|...++++.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 457777777888888888877764
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=80.82 E-value=14 Score=30.56 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC--HHHHHHHHHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ--IHKAVEAMKKVLAA 253 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~ 253 (349)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 456777788888888888888887642222 22334444555554432 34566666666654
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.11 E-value=22 Score=28.69 Aligned_cols=130 Identities=8% Similarity=-0.056 Sum_probs=79.3
Q ss_pred HHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924 129 LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208 (349)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 208 (349)
.....|++=+|.+.++ ++..=|.+.+++++|.+++..-- ..+.+.|+...|
T Consensus 22 ~~I~~G~yYEAhQ~~R--------------tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa 72 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLR--------------TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSG 72 (312)
T ss_dssp HHHHHTCHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHH
T ss_pred HHhhccChHHHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchH
Confidence 3344566656655554 56666778888888888775432 122344554444
Q ss_pred HH----HHHHHHHcCcccchhhHHHHHHHHhcCCCH-HHHHHHHHHHHHHhccccc-CCCCHHHHHHHHHHHHhcCChhh
Q 018924 209 EN----LVNHEKLKGREIHVKSWYYLATGYRQNSQI-HKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 209 ~~----~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~ 282 (349)
-+ +.+...+.+.+++......++..+.....- ..=.++++++++......+ ..-++.....+...|.+.|++.+
T Consensus 73 ~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~ 152 (312)
T 2wpv_A 73 TDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYE 152 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHH
Confidence 33 445555667778887778887776553321 1235566666654221112 22377888888899999999988
Q ss_pred HHHHH
Q 018924 283 AENFI 287 (349)
Q Consensus 283 a~~~~ 287 (349)
|+.-|
T Consensus 153 A~~H~ 157 (312)
T 2wpv_A 153 AERYF 157 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88755
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.27 E-value=11 Score=29.33 Aligned_cols=181 Identities=9% Similarity=-0.036 Sum_probs=81.8
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcch--hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh---hhHHHHHHH
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN--SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN---NGYRNVISS 163 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~ 163 (349)
+.+...++.|+.+.+..+++ .|..++.. ..-.+.+...+..|+.+-+..+++ .+..++. ...+. +..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~g~t~-L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR---HGADPVLRKKNGATP-FLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH---TTCCTTCCCTTCCCH-HHH
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH---cCCCCcccCCCCCCH-HHH
Confidence 45666777888765555544 34443321 111234555566677655544444 3433322 22222 333
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh------------HH
Q 018924 164 LLKLDDLESAEKIFEEWESQALCYDTR---IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS------------WY 228 (349)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~ 228 (349)
.+..|+.+ +++.+.+.|..++.. -++ .+...+..|+.+-+ +.+.+.|..++... -.
T Consensus 79 A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 79 AAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCC
Confidence 34556654 344444555544432 222 33344556665443 44444554444321 12
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924 229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS---VESLAACLDYFKDEGDIGGAENFIELLNDKGF 295 (349)
Q Consensus 229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 295 (349)
..+...+..|+.+-+..+++.. +..++ ..-.+.+. ..+..|+.....++++.+.+.+.
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~~--------~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDEM--------GADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTS--------CCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTC
T ss_pred cHHHHHHHcCCHHHHHHHHHhc--------CCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCC
Confidence 4455555555554333333221 33332 12222222 23345555555556666655543
No 273
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=74.56 E-value=12 Score=25.82 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=31.2
Q ss_pred hhhhCCCccHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 018924 4 MRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63 (349)
Q Consensus 4 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 63 (349)
|++.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4555655554432 2344444444 555666666666666555555555555555555543
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=74.23 E-value=30 Score=27.20 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=8.8
Q ss_pred HHHHHhhcCcHHHHHHHH
Q 018924 90 VGNGYGKVGLLDKALAML 107 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~ 107 (349)
.+...+..|+.+-+..++
T Consensus 34 ~L~~A~~~g~~~~v~~Ll 51 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLL 51 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444445556655444433
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.98 E-value=25 Score=26.17 Aligned_cols=80 Identities=8% Similarity=-0.002 Sum_probs=51.0
Q ss_pred HHHHHHHHc-----CcccchhhHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCCh
Q 018924 210 NLVNHEKLK-----GREIHVKSWYYLATGYRQ---NSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDI 280 (349)
Q Consensus 210 ~~~~~~~~~-----~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~ 280 (349)
.++++.... ..+-|+.....-+. |+. .+...++.++|..|... ++.- -+..|......+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~-Ya~~~~~~~~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIW-YINLFLSNNFHESENTFKYMFNK-----GIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHH-HHHHHSTTCHHHHHHHHHHHHHH-----TSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHH-HHHhhcccccCCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCH
Confidence 456655542 23334443333333 444 33366888888888887 7655 356677777777788888
Q ss_pred hhHHHHHHHHhhCCC
Q 018924 281 GGAENFIELLNDKGF 295 (349)
Q Consensus 281 ~~a~~~~~~~~~~~~ 295 (349)
.+|.++|+.-.+..-
T Consensus 132 ~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 132 LEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 888888887777654
No 276
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=73.95 E-value=28 Score=26.72 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=51.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEEN--GITY----DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG 91 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 91 (349)
--++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+. . .++...-...+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHH
Confidence 3467788889999999988887642 2332 11222233333333333333444555554 3 23344445566
Q ss_pred HHHhhcCcHHHHHHHHHHHHH
Q 018924 92 NGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~~~~~ 112 (349)
..+.+.|+.++|.++|-+...
T Consensus 99 ~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHH
Confidence 777888888888887766543
No 277
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=73.16 E-value=12 Score=22.86 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 018924 29 FEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62 (349)
Q Consensus 29 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 62 (349)
.-.+.++++.+.+.+...+..|....+..+...|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3444455555444433334444444444444333
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.48 E-value=42 Score=28.13 Aligned_cols=163 Identities=9% Similarity=0.043 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc---cHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHhhcCCcchhhH---
Q 018924 51 YCTRLSAYADASDHEGIDKILTMMEADPNVAL---DWVIYATVGNGYGKV-GLLDKALAMLKKSEEQIKGAKVNSAY--- 123 (349)
Q Consensus 51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~--- 123 (349)
...|...|.+.|+.++...++.....-.+.-| .......+++.+... +..+.-.++..+..+...... .+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--r~flr~ 99 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEK--RTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 34455556666666666655555431111111 122234455555543 223333344444333221111 223
Q ss_pred ---HHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh-----hhHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCCcchH
Q 018924 124 ---NVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN-----NGYRNVISSLLKLDDLESAEKIFEEWESQ--ALCYDTRIP 192 (349)
Q Consensus 124 ---~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 192 (349)
.-++..|...|++.+|.+++. ....--..|. ..|..-+..|...++..++...+...... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 145666667777777766666 2221111121 23444555666667777776666665431 122222221
Q ss_pred HH----HHHHHH-hcCcHHHHHHHHHHH
Q 018924 193 NF----LIDVYC-RNGLLEKAENLVNHE 215 (349)
Q Consensus 193 ~~----l~~~~~-~~~~~~~a~~~~~~~ 215 (349)
.. -...+. ..+++..|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 111233 456666666665544
No 279
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=71.81 E-value=5.3 Score=30.92 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=32.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--hcCChHHHHHHHHHh
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYT-------YCTRLSAYA--DASDHEGIDKILTMM 74 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 74 (349)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4455677888888888887777665555332 233333322 456666665555543
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.56 E-value=8 Score=26.44 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=39.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCCCc
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD--IGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 298 (349)
....++.-|...|+.++|.+.++++... .. ........+..++-+.++ .+....++..+...+..+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p-----~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVP-----HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG-----GG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCC-----cc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567788888888888888888886311 11 122333444444444332 3456667777766655443
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.44 E-value=24 Score=24.89 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc
Q 018924 173 AEKIFEEWESQALCYDT-RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223 (349)
Q Consensus 173 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 223 (349)
+..+|..|..+|+-... ..|......+-..|++.+|.++|+.-.+.+..|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 66677777766654443 3355566666667777777777777766665553
No 282
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=70.68 E-value=13 Score=25.90 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 018924 29 FEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62 (349)
Q Consensus 29 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 62 (349)
.-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4445555555544444444444333344444433
No 283
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=70.60 E-value=14 Score=25.73 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH
Q 018924 38 EMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL 100 (349)
Q Consensus 38 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 100 (349)
.+.+.|++++..= ..++..+...+..-.|.++++.+. +.+...+..|..--+..+...|-+
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALE-GKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHG-GGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCChhhHHHHHHHHHHCCCE
Confidence 3556666655432 234444444455556777777776 444445555555566666666654
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=69.87 E-value=17 Score=30.66 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=53.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRY--TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK 96 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 96 (349)
.+...+..|+.+-+.. +.+.|..|+.. .....+...+..|+.+-+..+++.-. ..+. .+... .+.+...+.
T Consensus 17 ~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~-~~~~g-~t~L~~A~~ 89 (437)
T 1n11_A 17 PLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNA-KAKDD-QTPLHCAAR 89 (437)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSC-CCTTS-CCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCC-CCCCC-CCHHHHHHH
Confidence 4455566777654444 44456555432 11234445566788776666655432 2111 11111 123444556
Q ss_pred cCcHHHHHHHHHHHHHhhcCCcch-hhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 97 VGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
.|+.+-+.-++ +.|..++.. ..-.+.+...+..|+.+.+..+++
T Consensus 90 ~g~~~~v~~Ll----~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 90 IGHTNMVKLLL----ENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp HTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCHHHHHHHH----hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 67665444333 334433320 011223344456677666555554
No 285
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=68.80 E-value=14 Score=26.00 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=32.0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH
Q 018924 38 EMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL 100 (349)
Q Consensus 38 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 100 (349)
.+.+.|++++.. -..++..+...+..-.|.++++.+. +.+...+..|..--+..+...|-+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIR-QKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCcE
Confidence 355566664432 2334445555555556777777775 334445555555556666666644
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.27 E-value=29 Score=24.51 Aligned_cols=50 Identities=6% Similarity=-0.035 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccC
Q 018924 103 ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKV 152 (349)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~ 152 (349)
+.++|..|...|+....+.-|......+-..|++.+|.++|+ -...+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666677776666665555566666666666777777777776 33344444
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=67.95 E-value=10 Score=26.83 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=39.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCCCc
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD--IGGAENFIELLNDKGFIPT 298 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 298 (349)
....++.-|...|+.++|.+.++++.. ...........+..++-+.++ .+.+..++..+...+..+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~------p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV------PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC------GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC------CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456778888888888888888888731 111122333444444444322 3456667777766655444
No 288
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=67.82 E-value=49 Score=26.99 Aligned_cols=159 Identities=16% Similarity=0.093 Sum_probs=86.3
Q ss_pred cCcHHHHHHHHHHHHHhhcC---CcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924 97 VGLLDKALAMLKKSEEQIKG---AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA 173 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 173 (349)
.+++++.+.-++.-++.|.. -.....|.++..-|.+.+++++|++++.. -...+.+.|+...|
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~--------------GA~~ll~~~Q~~sg 74 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS--------------VSQTLLRSGQGGSG 74 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH--------------HHHHHHHCCCcchH
Confidence 34455666666666666654 44446778888888888888888887761 11122334554433
Q ss_pred ----HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH-HHHHHHHHHHHc----Cccc--chhhHHHHHHHHhcCCCHHH
Q 018924 174 ----EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE-KAENLVNHEKLK----GREI--HVKSWYYLATGYRQNSQIHK 242 (349)
Q Consensus 174 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~ 242 (349)
.-+++...+.++++|......++..+.....-+ .=..+.+++.+. |-.| |+.....+...|.+.+++.+
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 334455566777787777777777666554321 123344444431 2112 23345555666666666666
Q ss_pred HHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC
Q 018924 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG 278 (349)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 278 (349)
|...| +. +-.+....|..++.-+...+
T Consensus 155 Ae~H~--il-------g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 155 AEKHL--VL-------GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHHH--TT-------SCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHH--Hh-------cCCchHHHHHHHHHHHHHhc
Confidence 55544 32 43444455555554444433
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.03 E-value=28 Score=26.12 Aligned_cols=22 Identities=9% Similarity=-0.124 Sum_probs=10.0
Q ss_pred HHHHhhcCcHHHHHHHHHHHHH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~ 112 (349)
+...+..|+.+.+..+++.+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444555544444444433
No 290
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=66.24 E-value=16 Score=25.63 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=28.0
Q ss_pred hhhhCCCccHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 018924 4 MRDLGLARTTVVYNSMLKLYYKTG-NFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63 (349)
Q Consensus 4 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 63 (349)
|++.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4445555443332 2333333333 445555666665555444455544444445554443
No 291
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=65.46 E-value=53 Score=26.77 Aligned_cols=90 Identities=10% Similarity=-0.029 Sum_probs=38.9
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchh-hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924 90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD 168 (349)
Q Consensus 90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 168 (349)
.+...+..|+.+-+..+++ .|..++... .-.+.+...+..|+.+-+..+++ .+..++...-.+.+...+..|
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS---VGEVHSLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH---HCCCCCCBTTBCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH---CCCCccccCCCCHHHHHHHcC
Confidence 4444556676655554443 333332210 11223344455566555444444 222222211112233334556
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 018924 169 DLESAEKIFEEWESQALC 186 (349)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~ 186 (349)
+.+-+..+++.....|..
T Consensus 96 ~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQM 113 (364)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHhccccCCC
Confidence 666655555554443433
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.17 E-value=46 Score=26.10 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=6.1
Q ss_pred HhccCCHHHHHHHH
Q 018924 164 LLKLDDLESAEKIF 177 (349)
Q Consensus 164 ~~~~~~~~~a~~~~ 177 (349)
.+..|+.+-+..++
T Consensus 168 A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 168 TIKNGHVDMMILLL 181 (285)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcChHHHHHHHH
Confidence 33445544444333
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.47 E-value=40 Score=24.13 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccC
Q 018924 103 ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKV 152 (349)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~ 152 (349)
+.++|..|...|+....+..|......+-..|++.+|.++|+ -...+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 555666666666655554556666666666666666666666 33344444
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.42 E-value=20 Score=26.86 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=23.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHH
Q 018924 22 LYYKTGNFEKLDSLMHEMEENGITYDRY--TYCTRLSAYADASDHEGIDKILTM 73 (349)
Q Consensus 22 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~ 73 (349)
..++.|+.+....+ .+.|..++.. .-...+...+..|+.+-+..+++.
T Consensus 15 ~A~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 15 KATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 34566765544443 3445443321 112244455666777655555443
No 295
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=62.34 E-value=20 Score=25.65 Aligned_cols=71 Identities=8% Similarity=0.175 Sum_probs=45.7
Q ss_pred hhHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC--CCCccHHHHHHHHHHHhhcCcHH
Q 018924 29 FEKLDSLMHE-MEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP--NVALDWVIYATVGNGYGKVGLLD 101 (349)
Q Consensus 29 ~~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 101 (349)
.+.+++-+.+ +.+.|++++. .-..++..+...+..-.|.++++.+. +. +...+..|..--++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~-~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIK-QAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHH-HHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445555544 4556887654 33456666767777777888888887 44 44456666656677788877653
No 296
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.45 E-value=72 Score=26.74 Aligned_cols=168 Identities=12% Similarity=-0.021 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCC-hHHH----HHHHHHhhcCCCCCccH
Q 018924 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITY---DRYTYCTRLSAYADASD-HEGI----DKILTMMEADPNVALDW 84 (349)
Q Consensus 14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~-~~~a----~~~~~~~~~~~~~~~~~ 84 (349)
.+...|...|.+.|+.++..+++...... +.-| .......++..+....+ .+.- .+.++....+...-...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999998876432 1111 22345667777766433 3333 33344433121110111
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc----hhhHHHHHHHHhhcCCHHHHHHHHHH---HHhhccCChhhH
Q 018924 85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV----NSAYNVILTLYGKYGKKDDVLRIWEL---YKKAVKVLNNGY 157 (349)
Q Consensus 85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~ 157 (349)
..=.-|+..|...|++.+|.+++.++.+.-...+. ..++..-+..|...+++..+...+.. ....+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 12236889999999999999999999875433332 13466667788899999999999982 223332444322
Q ss_pred H----HHHHHHh-ccCCHHHHHHHHHHHH
Q 018924 158 R----NVISSLL-KLDDLESAEKIFEEWE 181 (349)
Q Consensus 158 ~----~li~~~~-~~~~~~~a~~~~~~~~ 181 (349)
. .-...+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 2233445 7899999998887764
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=61.25 E-value=20 Score=26.96 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHH
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYT--YCTRLSAYADASDHEGIDKILT 72 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 72 (349)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 34555677888888777777766665544321 1223444556677664444443
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.59 E-value=34 Score=25.95 Aligned_cols=50 Identities=6% Similarity=0.080 Sum_probs=22.6
Q ss_pred HHHHHHH-HHHhhccCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 018924 138 DVLRIWE-LYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCY 187 (349)
Q Consensus 138 ~a~~~~~-~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (349)
++..+|. +...++.... ..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444 4444443222 234444444445555555555555544444333
No 299
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.18 E-value=97 Score=27.85 Aligned_cols=226 Identities=8% Similarity=-0.068 Sum_probs=113.1
Q ss_pred cHHHHHHHHHHHHHhhcCCcchh---hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHH
Q 018924 99 LLDKALAMLKKSEEQIKGAKVNS---AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK 175 (349)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 175 (349)
+.+.|...+....+... .+... .+..+...+...+...++...+.... ....+.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-MRSQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-HTCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc-ccCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 56777777777655332 22201 12222223333442444555555211 222333333344444556788888888
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc------------Cccc-------c---hh-----hHH
Q 018924 176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK------------GREI-------H---VK-----SWY 228 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-------~---~~-----~~~ 228 (349)
.|..|.... .........+..++...|+.++|..+|..+... |..+ + .. .--
T Consensus 307 ~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 385 (618)
T 1qsa_A 307 WLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM 385 (618)
T ss_dssp HHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH
T ss_pred HHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHH
Confidence 887765422 112333445667777788888888887766431 1110 0 00 011
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC---CchhHHHHh
Q 018924 229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI---PTDLQDKLL 305 (349)
Q Consensus 229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~ 305 (349)
.-+..+...|....|...+..... + .+......+.......|..+.+..........+.. -+..|...+
T Consensus 386 ~r~~~L~~~g~~~~a~~ew~~~~~------~--~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i 457 (618)
T 1qsa_A 386 ARVRELMYWNLDNTARSEWANLVK------S--KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLF 457 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT------T--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHH
T ss_pred HHHHHHHHCCChhhHHHHHHHHHh------c--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHH
Confidence 223456677888888888777663 2 23333334444455677777766555433322210 011345555
Q ss_pred -hh-hhcC-cchHHHHHHHHhCCCCCCcccccC
Q 018924 306 -DN-VQNG-KSNLETLRELYGNSLAGNEETLSG 335 (349)
Q Consensus 306 -~~-~~~g-~~a~~~~~~m~~~~~~p~~~t~~~ 335 (349)
.. .+.| +.++-.---..+.++.|+.++..+
T Consensus 458 ~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~S~~G 490 (618)
T 1qsa_A 458 KRYTSGKEIPQSYAMAIARQESAWNPKVKSPVG 490 (618)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHTTCTTCBCTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCCCCcCCCC
Confidence 33 3445 444333233456677887766543
No 300
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=58.52 E-value=42 Score=23.29 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=32.9
Q ss_pred HHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChh
Q 018924 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIG 281 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 281 (349)
+.+.|.+++.. =..++..+...+..-.|.++++.+.+. +...+..|....++.+...|-+.
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGK-----FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGG-----CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHh-----CCCCChhhHHHHHHHHHHCCCEE
Confidence 44555554432 223344444445555666666666555 55566666666666666666544
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.35 E-value=48 Score=23.72 Aligned_cols=47 Identities=2% Similarity=-0.019 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924 243 AVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKG 294 (349)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 294 (349)
+.++|..|... ++-- -+..|......+-..|++.+|.++|+.-...+
T Consensus 79 p~~if~~L~~~-----~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQ-----GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHT-----TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44455555554 4433 23444444445555555555555555555543
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.23 E-value=42 Score=23.65 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 018924 17 NSMLKLYYKTGNFEKLDSLMHEM 39 (349)
Q Consensus 17 ~~li~~~~~~g~~~~a~~~~~~m 39 (349)
+.+|.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 44555555555555555555555
No 303
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=57.82 E-value=35 Score=22.05 Aligned_cols=79 Identities=13% Similarity=-0.060 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 018924 27 GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM 106 (349)
Q Consensus 27 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 106 (349)
.+.++|..+-+.+...+. ....--+-+..+...|++++|..+.+.+ ..||...|..|. -.+.|..+++...
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALc--e~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALC--EWHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHH--HHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHH--HHhcccHHHHHHH
Confidence 456777777777766543 2222223344566778888887654433 247777765543 4567777777777
Q ss_pred HHHHHHhh
Q 018924 107 LKKSEEQI 114 (349)
Q Consensus 107 ~~~~~~~~ 114 (349)
+.++..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 77776544
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=57.66 E-value=16 Score=28.04 Aligned_cols=54 Identities=11% Similarity=-0.015 Sum_probs=27.4
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhcCCcch------hhHHHHHHHHh--hcCCHHHHHHHHH
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVN------SAYNVILTLYG--KYGKKDDVLRIWE 144 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~a~~~~~ 144 (349)
+...++.|+.+....+++.+.+.+...+.. .-++.|..+.. +.|+.+-+..+++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~ 70 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH
Confidence 344455666666666666655555444421 12233433332 4566665555555
No 305
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=56.78 E-value=37 Score=21.98 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 018924 27 GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM 106 (349)
Q Consensus 27 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 106 (349)
.+.++|..+-+.+...+. ....--+-+..+...|++++|..+.+.+. .||...|..|. -.+.|..+++...
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALC--EYRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHH--HHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHH
Confidence 456677777766666542 22222223345566778887776654332 47777765443 3466777777777
Q ss_pred HHHHHHh
Q 018924 107 LKKSEEQ 113 (349)
Q Consensus 107 ~~~~~~~ 113 (349)
+.++..+
T Consensus 92 L~~la~s 98 (116)
T 2p58_C 92 LNRLARS 98 (116)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 7666544
No 306
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=55.52 E-value=35 Score=25.43 Aligned_cols=19 Identities=16% Similarity=0.024 Sum_probs=9.8
Q ss_pred HHHHhhcCcHHHHHHHHHH
Q 018924 91 GNGYGKVGLLDKALAMLKK 109 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~ 109 (349)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444555555555555543
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=54.83 E-value=23 Score=26.51 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=11.5
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 018924 55 LSAYADASDHEGIDKILTM 73 (349)
Q Consensus 55 l~~~~~~~~~~~a~~~~~~ 73 (349)
+...+..|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566777666666654
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.77 E-value=47 Score=22.55 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 018924 17 NSMLKLYYKTGNFEKLDSLMHEM 39 (349)
Q Consensus 17 ~~li~~~~~~g~~~~a~~~~~~m 39 (349)
+.++.-|...|+.++|...++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 44555555566666666665555
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=54.23 E-value=32 Score=24.97 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=5.6
Q ss_pred HHHHHHHHcCccc
Q 018924 210 NLVNHEKLKGREI 222 (349)
Q Consensus 210 ~~~~~~~~~~~~~ 222 (349)
++.+.+.+.|..+
T Consensus 159 ~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 159 DIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHCCCCC
Confidence 3444444444433
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.63 E-value=47 Score=25.16 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924 172 SAEKIFEEWESQALCYDT-RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI 222 (349)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 222 (349)
.+..+|..|...|+-... ..|......+-..|++.+|..+|+.-++.+..|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444555555555544332 234445555555566666666665555554444
No 311
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=53.43 E-value=36 Score=25.98 Aligned_cols=25 Identities=12% Similarity=-0.042 Sum_probs=14.6
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhc
Q 018924 91 GNGYGKVGLLDKALAMLKKSEEQIK 115 (349)
Q Consensus 91 i~~~~~~g~~~~a~~~~~~~~~~~~ 115 (349)
+...+..|+.+.+..+++.+.+.|.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4445566666666666666555544
No 312
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=52.77 E-value=34 Score=23.24 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 018924 18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64 (349)
Q Consensus 18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 64 (349)
.++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45566666777788888888888877666777766677777776654
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.37 E-value=12 Score=28.22 Aligned_cols=48 Identities=10% Similarity=-0.125 Sum_probs=22.1
Q ss_pred HHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHH
Q 018924 57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAML 107 (349)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 107 (349)
..++.|+++....+++.-. .... ++.. -.+.+...+..|+.+-+.-++
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~-~~~~-~~~~-g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGY-DVRQ-PDKE-NVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTC-CTTC-CCTT-SCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHcCC-CcCC-CCCC-CCCHHHHHHHhCCHHHHHHHH
Confidence 3456677766655554322 1111 1111 112455556667665444433
No 314
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=51.94 E-value=21 Score=26.80 Aligned_cols=207 Identities=13% Similarity=0.052 Sum_probs=93.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc---HHHHHHHHH
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRY---TYCTRLSAYADASDHEGIDKILTMMEADPNVALD---WVIYATVGN 92 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~ 92 (349)
.+...++.|+.+ +++.+.+.|..++.. -++ .+...+..|+.+-+..+++. |..++ ... .+.+.
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g-~t~L~ 82 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVKYLIKA-----GALVDPKDAEG-STCLH 82 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTT-----TCCCCCCCTTS-CCHHH
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHHHHHhC-----CCCCCCCCCCC-CcHHH
Confidence 344556677765 444555566554432 222 34444566777655444432 22221 111 12344
Q ss_pred HHhhcCcHHHHHHHHHHHHHhh-cCCcc--hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhh--HHHHHHHHhcc
Q 018924 93 GYGKVGLLDKALAMLKKSEEQI-KGAKV--NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG--YRNVISSLLKL 167 (349)
Q Consensus 93 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~li~~~~~~ 167 (349)
..+..|+.+-+..++ +.+ ..++. ..-+ +.+...+..|+.+-+..+++ .+..++... -.+.+...+..
T Consensus 83 ~A~~~~~~~~~~~Ll----~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~ 154 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLL----SNGQMDVNCQDDGGW-TPMIWATEYKHVDLVKLLLS---KGSDINIRDNEENICLHWAAFS 154 (237)
T ss_dssp HHHHTTCHHHHHHHH----TTTCCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHH---TTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH----hCCCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHC
Confidence 455667655444433 333 11111 0112 23344455666654444443 343332211 11223333455
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcch--HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh--HHHHHHHHhcCCCHHHH
Q 018924 168 DDLESAEKIFEEWESQALCYDTRI--PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS--WYYLATGYRQNSQIHKA 243 (349)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a 243 (349)
|+.+ +++.+.+.|..++... -.+.+...++.|+.+-+.. +.+.|..++... -.+-+...+..|+.+.+
T Consensus 155 ~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~ 226 (237)
T 3b7b_A 155 GCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL----FLSRDSDVTLKNKEGETPLQCASLNSQVWSA 226 (237)
T ss_dssp CCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH----HHTTTCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred CCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH----HHHcCCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 6654 4445555555544321 1123444456676654443 344454443221 11233444567777777
Q ss_pred HHHHHHHHH
Q 018924 244 VEAMKKVLA 252 (349)
Q Consensus 244 ~~~~~~~~~ 252 (349)
.++.+.+.+
T Consensus 227 ~~l~~~l~d 235 (237)
T 3b7b_A 227 LQMSKALQD 235 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 777776654
No 315
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=50.89 E-value=18 Score=20.64 Aligned_cols=29 Identities=7% Similarity=-0.036 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924 101 DKALAMLKKSEEQIKGAKVNSAYNVILTLY 130 (349)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (349)
++|++.|.+|.+..-.++. .+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHh
Confidence 4566666666554434444 5666666666
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.76 E-value=21 Score=25.95 Aligned_cols=182 Identities=13% Similarity=0.018 Sum_probs=77.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH
Q 018924 21 KLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL 100 (349)
Q Consensus 21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 100 (349)
...+..|+.+....++..-...--.+|..-++ .+...+..|+.+-+..+++.-. ..+. .+.... +.+...+..|+.
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~-~~~~-~~~~g~-t~l~~A~~~~~~ 85 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEIAKALIDRGA-DINL-QNSISD-SPYLYAGAQGRT 85 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTC-CTTC-CCTTSC-CHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCC-CCCC-CCCCCC-CHHHHHHHcCCH
Confidence 34456788777766664321000011222222 3344456677765555554321 1111 111111 234445566776
Q ss_pred HHHHHHHHHHHHhhcCCcch-hhHHHHHHHHhhcCCHHHHHHHHHHH-HhhccCChhhHHHHHHHHhccCCHHHHHHHHH
Q 018924 101 DKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIWELY-KKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178 (349)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 178 (349)
+-+..+++.- +..++.. ..-.+.+...+..|+.+-+..+++.. ..-...+..-.+.+..++........-.++++
T Consensus 86 ~~~~~Ll~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 86 EILAYMLKHA---TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHHHS---CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHHHhcc---CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 6555555331 1111110 01112334445667766555555411 11111233333444444433322333356666
Q ss_pred HHHhcCCCCCcchHH--HHHHHHHhcCcHHHHH
Q 018924 179 EWESQALCYDTRIPN--FLIDVYCRNGLLEKAE 209 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 209 (349)
.+.+.|..++..... +-+...++.|+.+-+.
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence 777777666543211 1233334445554433
No 317
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=48.99 E-value=31 Score=23.80 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=38.3
Q ss_pred hhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 018924 4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH 64 (349)
Q Consensus 4 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 64 (349)
.++.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.---+..+...|-+
T Consensus 5 ~r~~g~r~T~qR-~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 5 GPPVKGRATRQR-AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp -----CHHHHHH-HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred cCCCCCccCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 455566654433 345666666677788888888888877777777766677777777654
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.43 E-value=1.2e+02 Score=28.97 Aligned_cols=48 Identities=4% Similarity=-0.220 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc----hhhHHHHHHHHhcCC
Q 018924 191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH----VKSWYYLATGYRQNS 238 (349)
Q Consensus 191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~ 238 (349)
-|..++..+-+.+.++.+.++-+...+.--.-| ...|+.++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 577888889999999999888887775311112 236777777766543
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=47.25 E-value=58 Score=23.16 Aligned_cols=49 Identities=6% Similarity=0.047 Sum_probs=21.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChh
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIG 281 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 281 (349)
++..+...+..-.|.++++.+.+. .++...+..|.-.-++.+...|-+.
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~---~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQA---EPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHH---CGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhh---cCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344444444444555555554431 0022334444444455555555443
No 320
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.08 E-value=40 Score=23.06 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=40.4
Q ss_pred HHHHcCcccchhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhh
Q 018924 214 HEKLKGREIHVKSWYYLATGYRQNS-QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 282 (349)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+. +...+..|...-++.+...|-+.+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEA-----GEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3555666655432 34455555555 566778888887776 667777777777777777776654
No 321
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.51 E-value=96 Score=23.72 Aligned_cols=19 Identities=0% Similarity=-0.172 Sum_probs=12.6
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 018924 126 ILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~ 144 (349)
-+..+....++++|..+++
T Consensus 24 eLDv~IA~r~feeAv~lle 42 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLL 42 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3556666677777777766
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.31 E-value=43 Score=23.42 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=34.9
Q ss_pred HHHHcCcccchhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhh
Q 018924 214 HEKLKGREIHVKSWYYLATGYRQNS-QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 282 (349)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+. +...+..|....|..+...|-+.+
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDL-----GEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3445555544432 23444444444 455666666666665 556666666666666666665543
No 323
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.06 E-value=1.2e+02 Score=24.36 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC--HHHHHHHHHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ--IHKAVEAMKKVLAA 253 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~ 253 (349)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 356788888899999999999988642222 23344455556655433 45566777777765
No 324
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=44.92 E-value=38 Score=26.21 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=32.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC-------CHHHHHHHHHHHH--hcCChHHHHHHHHH
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITY-------DRYTYCTRLSAYA--DASDHEGIDKILTM 73 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~ 73 (349)
.+...++.|+.+.+..+++.....+... |..-++.|..++. +.|+.+-+..+++.
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 3444567888888888888777665433 2233444444443 24666666666655
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.69 E-value=77 Score=22.09 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=43.3
Q ss_pred HHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhh
Q 018924 213 NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 213 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 282 (349)
+.+.+.|.+++.. =..++..+...+..-.|.++++.+.+. +...+..|....+..+...|-+.+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQK-----DKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHH-----STTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHh-----CCCCCHhhHHHHHHHHHHCCcEEE
Confidence 3456677765443 344556666666778889999998876 666678888888888888876543
No 326
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=44.56 E-value=48 Score=21.12 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924 203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV 244 (349)
Q Consensus 203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 244 (349)
...++|.++++.+..+|. ..|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHH
Confidence 467788888888877653 36777777777666654443
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.52 E-value=2.1e+02 Score=27.34 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=26.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHH
Q 018924 160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215 (349)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 215 (349)
++..|...|..+.|.++... .+.+...-..+..+|...|++++|...|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444555555544332221 2223333334556667777777777777654
No 328
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=43.09 E-value=1.1e+02 Score=27.03 Aligned_cols=74 Identities=9% Similarity=-0.014 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924 62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV 139 (349)
Q Consensus 62 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (349)
.+.......+..+..+..+ -+..--.-++..|.+.|-.+.|.++++.+-....... ..+ ..+..|+++|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl-~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g--~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPF-VTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAH--NII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCC-CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCc--cHH-HHHHHHHHcCChhhc
Confidence 3444455555555534444 3334445677777777777777777777765433222 244 555667777776654
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.04 E-value=1.3e+02 Score=24.40 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=18.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 018924 157 YRNVISSLLKLDDLESAEKIFEEWE 181 (349)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~~~ 181 (349)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5667778888888888887777663
No 330
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.88 E-value=37 Score=22.74 Aligned_cols=42 Identities=10% Similarity=-0.019 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924 34 SLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME 75 (349)
Q Consensus 34 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 75 (349)
-+|+.+....+.|+...--.-+..+...++++.|.+++..+.
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666676655544444555667899999999998887
No 331
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.98 E-value=59 Score=21.74 Aligned_cols=43 Identities=5% Similarity=-0.218 Sum_probs=31.6
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 69 KILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
-+|+.+. +..+.|+...--.-+......++++.|.++...+..
T Consensus 47 ~LfdkLn-~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 47 LLREQWA-GGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666 667766665555556667788999999999988875
No 332
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=40.87 E-value=61 Score=27.20 Aligned_cols=98 Identities=17% Similarity=0.152 Sum_probs=43.9
Q ss_pred hhhhCCCccHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHhhcCCC
Q 018924 4 MRDLGLARTTVV--YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY--TYCTRLSAYADASDHEGIDKILTMMEADPN 79 (349)
Q Consensus 4 m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 79 (349)
+.+.|..|+... ....+...++.|+.+-+..++ +.|..++.. .-.+.+...+..|+.+-+.-+++.-. ..+
T Consensus 33 Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~ 107 (437)
T 1n11_A 33 LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA-NPN 107 (437)
T ss_dssp HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-CTT
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC-CCC
Confidence 344555554321 123344556667765444443 444443321 11223444556777765555554422 212
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHHHHHHH
Q 018924 80 VALDWVIYATVGNGYGKVGLLDKALAMLK 108 (349)
Q Consensus 80 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 108 (349)
. .+... .+.+...+..|+.+-+..+++
T Consensus 108 ~-~~~~g-~t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 108 L-ATTAG-HTPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp C-CCTTC-CCHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCCCC-CcHHHHHHHcCCHHHHHHHHh
Confidence 1 11111 123444556677665555544
No 333
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.25 E-value=93 Score=23.04 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=40.4
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCcccchh---hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC---------CHH
Q 018924 198 VYCRNGLLEKAENLVNHEKLKGREIHVK---SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP---------SVE 265 (349)
Q Consensus 198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p---------~~~ 265 (349)
..+..|+.+-+..+ .+.|..++.. -.+ .+...+..|+.+-+..+++.+.+. +..+ |..
T Consensus 127 ~A~~~~~~~~v~~L----l~~ga~~~~~d~~g~t-~L~~A~~~~~~~~~~~i~~~Ll~~-----g~~~~~~~~~~~~~~~ 196 (232)
T 2rfa_A 127 FAACVGSEEIVRLL----IEHGADIRAQDSLGNT-VLHILILQPNKTFACQMYNLLLSY-----DGGDHLKSLELVPNNQ 196 (232)
T ss_dssp HHHHHTCHHHHHHH----HHTTCCTTCCCTTSCC-HHHHHHTCSCHHHHHHHHHHHHHT-----TCSCSSCCGGGCCCTT
T ss_pred HHHHcCCHHHHHHH----HHCCCCCCCCCCCCCC-HHHHHHHcCChHHHHHHHHHHHhc-----CCchhhhhhhccCCCC
Confidence 33455665444333 3444443322 222 233345566776666666666655 3322 222
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924 266 SLAACLDYFKDEGDIGGAENFIELLNDK 293 (349)
Q Consensus 266 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 293 (349)
-.+. +...++.|+.+-+..+++.-...
T Consensus 197 g~tp-l~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 197 GLTP-FKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp SCCH-HHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCCH-HHHHHHcCCHHHHHHHHhcCccc
Confidence 2222 33344567776666666554443
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.12 E-value=77 Score=21.93 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=19.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHH
Q 018924 39 MEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVI 86 (349)
Q Consensus 39 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 86 (349)
+.+.|++++..= ..++..+...+ .-.|.++++.+. +.+...+..|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~-~~~~~is~~T 54 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVR-KTASGINIST 54 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHH-TTCTTCCHHH
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHH-hhCCCCCHhH
Confidence 344455544321 22233333333 445556666655 4344444444
No 335
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=39.91 E-value=53 Score=19.17 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 018924 15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62 (349)
Q Consensus 15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 62 (349)
.++.++..+++..-.++++..+.+..+.|. .+..+|.--.+.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 456677777777777778888888777763 36666666666555543
No 336
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.08 E-value=48 Score=22.47 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=30.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhh
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 282 (349)
++..+...+..-.|.++++.+.+. +...+..|....++.+...|-+.+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~-----~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRR-----GENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHT-----TCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-----CCCCCHhhHHHHHHHHHHCCCEEE
Confidence 444444555566677777777665 666666676677777777666543
No 337
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=36.50 E-value=47 Score=22.76 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=5.8
Q ss_pred hhcCcHHHHHHHHH
Q 018924 95 GKVGLLDKALAMLK 108 (349)
Q Consensus 95 ~~~g~~~~a~~~~~ 108 (349)
+..|+.+.+..+++
T Consensus 10 ~~~g~~~~v~~ll~ 23 (156)
T 1bd8_A 10 AARGDVQEVRRLLH 23 (156)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444433
No 338
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=35.19 E-value=1.3e+02 Score=21.89 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=44.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC--ccH---------------HH
Q 018924 24 YKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA--LDW---------------VI 86 (349)
Q Consensus 24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~---------------~~ 86 (349)
.-+|.+..++-++... + ..+..-|.. -+|-+..++..|...++.+. ...+. ||. .-
T Consensus 44 yyngEY~R~Lf~L~~l---N-T~Ts~YYk~--LCy~klKdYkkA~~~le~il-~~kvd~d~~~d~~~~~ffvd~~DkEfF 116 (242)
T 3kae_A 44 YLNGEYTRALFHLHKL---N-TCTSKYYES--LCYKKKKDYKKAIKSLESIL-EGKVERDPDVDARIQEMFVDPGDEEFF 116 (242)
T ss_dssp HHTTCHHHHHHHHHTC---C-BHHHHHHHH--HHHHHTTCHHHHHHHHHHHH-TTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred hhcchHhHHHHHHHhc---c-hHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-hcccccCcccccccceeeeccchHHHH
Confidence 3467777766554322 1 111222222 25678899999999999887 44443 221 22
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHH
Q 018924 87 YATVGNGYGKVGLLDKALAMLKKS 110 (349)
Q Consensus 87 ~~~li~~~~~~g~~~~a~~~~~~~ 110 (349)
|+.+...+...|+.++|+..|..-
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhh
Confidence 445555555666666666655543
No 339
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=33.92 E-value=1.5e+02 Score=22.42 Aligned_cols=55 Identities=15% Similarity=-0.002 Sum_probs=32.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhc---CChHHHHHHHHHh
Q 018924 19 MLKLYYKTGNFEKLDSLMHEMEENGITYDR-------YTYCTRLSAYADA---SDHEGIDKILTMM 74 (349)
Q Consensus 19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~ 74 (349)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|.. .+.. |+.+-+..+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcC
Confidence 345567788888887888877777765443 22333333 3344 6666666565543
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.35 E-value=69 Score=21.98 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=40.5
Q ss_pred HHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhh
Q 018924 215 EKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGG 282 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 282 (349)
+.+.|.+++. .=..++..+...+..-.|.++++.+.+. +...+..|....|+.+...|-+.+
T Consensus 5 ~r~~g~r~T~-qR~~Il~~L~~~~~h~sa~eI~~~l~~~-----~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 5 GPPVKGRATR-QRAAVSAALQEVEEFRSAQELHDMLKHK-----GDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp -----CHHHH-HHHHHHHHHTTCSSCEEHHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred cCCCCCccCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3444554333 2345666676777778899999998876 666678888888888888886543
No 341
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=33.27 E-value=46 Score=22.80 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=9.2
Q ss_pred HHHhcCChHHHHHHHHH
Q 018924 57 AYADASDHEGIDKILTM 73 (349)
Q Consensus 57 ~~~~~~~~~~a~~~~~~ 73 (349)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34455666655555554
No 342
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.06 E-value=1.5e+02 Score=21.90 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=9.4
Q ss_pred HHHHhcCChHHHHHHHHH
Q 018924 56 SAYADASDHEGIDKILTM 73 (349)
Q Consensus 56 ~~~~~~~~~~~a~~~~~~ 73 (349)
...+..|+.+-+..+++.
T Consensus 42 ~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 42 HIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334455666655555544
No 343
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.70 E-value=2e+02 Score=23.36 Aligned_cols=25 Identities=8% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEME 40 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~ 40 (349)
.+.++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4678888889999999988888874
No 344
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.37 E-value=1.9e+02 Score=22.99 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=17.4
Q ss_pred HhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924 200 CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241 (349)
Q Consensus 200 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 241 (349)
++.|+.+-+ +.+.+.|..+|..+ .+ ..-++.|+.+
T Consensus 281 ~~~g~~~iv----~~Ll~~GAd~n~~~--~L-~~A~~~~~~~ 315 (337)
T 4g8k_A 281 VELKLKKIA----ELLCKRGASTDCGD--LV-MTARRNYDHS 315 (337)
T ss_dssp HHTTCHHHH----HHHHTTSCSSTTCC--HH-HHHHHTTCHH
T ss_pred HHcCCHHHH----HHHHHCCCCCCCCC--HH-HHHHHcCCHH
Confidence 455665433 34455666666544 22 2334455544
No 345
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=31.92 E-value=48 Score=23.72 Aligned_cols=26 Identities=8% Similarity=0.201 Sum_probs=20.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVL 251 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~ 251 (349)
....++.-|...++.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 35667788888888888888888864
No 346
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.25 E-value=25 Score=26.37 Aligned_cols=12 Identities=25% Similarity=0.183 Sum_probs=6.0
Q ss_pred cchHHHHHHHHh
Q 018924 312 KSNLETLRELYG 323 (349)
Q Consensus 312 ~~a~~~~~~m~~ 323 (349)
..+.++.+.+.+
T Consensus 224 ~~~~~l~~~l~d 235 (237)
T 3b7b_A 224 WSALQMSKALQD 235 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 445555555543
No 347
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=30.75 E-value=1.1e+02 Score=27.16 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhccCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924 136 KDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA 208 (349)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 208 (349)
..............++.+. .--.-++..|.+.|-.+.|.++++.+-.+-+ -+...+ .-+..|.++|+++.+
T Consensus 497 ~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 497 RSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred hhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHHHHHcCChhhc
Confidence 3344444443344454333 3455677777788888888888777765432 233344 445567777777654
No 348
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=30.68 E-value=4e+02 Score=26.71 Aligned_cols=66 Identities=8% Similarity=-0.030 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC
Q 018924 206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG 278 (349)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 278 (349)
+.-.+.|.++.+.--.-|.......+..-..++++..|++++.++.+. +|....|..++..+...|
T Consensus 1266 ~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~-------k~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE-------KRTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-------TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHcC
Confidence 344445555554211112222222333334577888888888888876 467777777776665554
No 349
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.35 E-value=1.1e+02 Score=19.44 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=23.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHH
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVES 266 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 266 (349)
.+......+.+.|++++|++..........+...+..+...
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa 57 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQA 57 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 34555667777888888877666554332222244444443
No 350
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=30.18 E-value=2e+02 Score=22.70 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=56.9
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcch-hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh---hhHHHHHHHH
Q 018924 89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN-SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN---NGYRNVISSL 164 (349)
Q Consensus 89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~ 164 (349)
+.+...++.|+.+....++... +..++.. ..-.+.+...+..|+.+-+..+++ .+..++. ...+.+ ...
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~g~t~L-~~A 98 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPL---NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ---HGADVHAKDKGGLVPL-HNA 98 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTT---TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH---TTCCTTCCCTTCCCHH-HHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhc---CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH---cCCCCCccCCCCCcHH-HHH
Confidence 4455566778887777776542 2222110 111234455566677665555544 3433322 222233 334
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch
Q 018924 165 LKLDDLESAEKIFEEWESQALCYDTR---IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV 224 (349)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 224 (349)
+..|+.+- ++.+.+.|..++.. -++ .+...+..|+.+-+.. +.+.|..|+.
T Consensus 99 ~~~g~~~i----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~----Ll~~g~~~~~ 152 (351)
T 3utm_A 99 CSYGHYEV----TELLLKHGACVNAMDLWQFT-PLHEAASKNRVEVCSL----LLSHGADPTL 152 (351)
T ss_dssp HHTTCHHH----HHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHH----HHHTTCCTTC
T ss_pred HHCCCHHH----HHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHH----HHHcCCCCcc
Confidence 45666553 44444455444432 222 3333456666654443 4445555443
No 351
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.04 E-value=1e+02 Score=24.98 Aligned_cols=90 Identities=14% Similarity=0.018 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHH
Q 018924 46 YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV 125 (349)
Q Consensus 46 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 125 (349)
.|..-++.|. ..+..|+.+.+..+++.-. ..+. .+..- .+.+...+..|+.+-+.-+++ .|..++. ..-.+
T Consensus 16 ~d~~g~t~L~-~Aa~~g~~~~v~~Ll~~g~-~~~~-~d~~g-~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~-~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIH-VAARKGQTDEVRRLIETGV-SPTI-QNRFG-CTALHLACKFGCVDTAKYLAS----VGEVHSL-WHGQK 86 (364)
T ss_dssp CCHHHHHHHH-HHHHHTCHHHHHHHHHTTC-CTTC-CCTTC-CCHHHHHHHHCCHHHHHHHHH----HCCCCCC-BTTBC
T ss_pred cCCCCCCHHH-HHHHcCCHHHHHHHHHcCC-Cccc-cCCCC-CcHHHHHHHcCCHHHHHHHHH----CCCCccc-cCCCC
Confidence 3555555554 4557788876666664322 2222 22222 245566677787765544444 3444443 12223
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 018924 126 ILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~ 144 (349)
.+...+..|+.+-+..+++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~ 105 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVE 105 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4445566788877777776
No 352
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.89 E-value=1.7e+02 Score=21.70 Aligned_cols=48 Identities=15% Similarity=0.005 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHH----HHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924 64 HEGIDKILTMMEADPNVALDWVIY----ATVGNGYGKVGLLDKALAMLKKSEE 112 (349)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~ 112 (349)
++.|+.+|+.+..+.+ .+....- -..+..|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 5678899988873332 1111111 2345678889999999999988654
No 353
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=29.75 E-value=39 Score=25.05 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=7.7
Q ss_pred HHHhhcCcHHHHHHHHH
Q 018924 92 NGYGKVGLLDKALAMLK 108 (349)
Q Consensus 92 ~~~~~~g~~~~a~~~~~ 108 (349)
...++.|+.+.+..+++
T Consensus 7 ~~A~~~g~~~~v~~Ll~ 23 (228)
T 2dzn_A 7 HQACMENEFFKVQELLH 23 (228)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHh
Confidence 33444555544444443
No 354
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.48 E-value=1.6e+02 Score=21.36 Aligned_cols=27 Identities=4% Similarity=-0.097 Sum_probs=19.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924 226 SWYYLATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 226 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
.|+.+...|...|+.++|+..+..-..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 456666777788888888888877653
No 355
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.09 E-value=1.2e+02 Score=19.50 Aligned_cols=29 Identities=14% Similarity=0.000 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924 209 ENLVNHEKLKGREIHVKSWYYLATGYRQN 237 (349)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 237 (349)
.++.++...-|+.|+......++..|...
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y 57 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQY 57 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 33444444444555544444444444433
No 356
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.99 E-value=1.6e+02 Score=20.99 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=8.2
Q ss_pred cCcHHHHHHHHHHHHH
Q 018924 97 VGLLDKALAMLKKSEE 112 (349)
Q Consensus 97 ~g~~~~a~~~~~~~~~ 112 (349)
.|+...|..++.+...
T Consensus 88 rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 88 FEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 4555555555555433
No 357
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.73 E-value=3.9e+02 Score=25.43 Aligned_cols=45 Identities=9% Similarity=-0.115 Sum_probs=21.6
Q ss_pred hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924 96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE 144 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (349)
+.|..++-..+++..... .+. .--..++.+++...+.....++++
T Consensus 738 ~~g~~~~~~~l~~~~~~~---~~~-~ek~~ll~aL~~~~d~~~l~~~L~ 782 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQA---QLV-NEADKLRSALACSNEVWLLNRYLG 782 (909)
T ss_dssp HHSCHHHHHHHHHHHHHC---CSH-HHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHcc---CCH-HHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344444444444444331 111 234455666666666665555555
No 358
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=28.04 E-value=42 Score=20.38 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=21.5
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018924 8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEME 40 (349)
Q Consensus 8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 40 (349)
+++|++.||+-+...+-+..-..++..+.+++-
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 678888888887765555544556666655543
No 359
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.08 E-value=1.1e+02 Score=23.53 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=9.9
Q ss_pred HHHhcCChhhHHHHHHH
Q 018924 273 YFKDEGDIGGAENFIEL 289 (349)
Q Consensus 273 ~~~~~g~~~~a~~~~~~ 289 (349)
..++.|+.+-+..+++.
T Consensus 239 ~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 239 LAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHC
Confidence 34566776666655554
No 360
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=26.87 E-value=64 Score=24.47 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhhcCCCCC-------ccHHHHHHHHHHHhhcC---------cHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924 64 HEGIDKILTMMEADPNVA-------LDWVIYATVGNGYGKVG---------LLDKALAMLKKSEEQIKGAKVNSAYNVIL 127 (349)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (349)
.+.|..++..|- -..++ ....-|..+..+|.+.| +.+...++++...+.|++.-.++.|+++|
T Consensus 147 vetAiaml~dmG-~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssII 225 (249)
T 3m0z_A 147 LETAIALLKDMG-GSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSII 225 (249)
T ss_dssp HHHHHHHHHHTT-CCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGB
T ss_pred HHHHHHHHHHcC-CCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceec
Confidence 567888888875 22211 34566778888888877 34556667777777776666556777777
Q ss_pred HHHhhcCCHHHHHHHHHHH
Q 018924 128 TLYGKYGKKDDVLRIWELY 146 (349)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~ 146 (349)
+--.-.-+.++..+++.+.
T Consensus 226 Dk~TG~TrpedV~~ll~~~ 244 (249)
T 3m0z_A 226 DKASGNTRPADVRQLLEMT 244 (249)
T ss_dssp CTTTCCBCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 6655555677777777643
No 361
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=26.49 E-value=1.8e+02 Score=22.73 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=46.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924 230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN 291 (349)
Q Consensus 230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 291 (349)
+-..|....++.....++..|... ..-.|+......++++|.+.-+-..|.+.++...
T Consensus 179 L~YiC~t~eRF~av~~vL~~mV~~----l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 179 LAYICQTYERFSHVAMILGKMVLQ----LSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHH----TTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHHHHccHHHHHHHHHHHHHHHHH----HhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 344566667888888899999875 3457899999999999999999999999988654
No 362
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.46 E-value=1.1e+02 Score=18.33 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC
Q 018924 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG 278 (349)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 278 (349)
-.+.++++.+.+. +...+..|....+..+...|
T Consensus 34 ~s~~el~~~l~~~-----~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDM-----GEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh-----CCCCCHhhHHHHHHHHHHCC
Confidence 3444444444433 33334444444444444444
No 363
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.36 E-value=1.8e+02 Score=20.72 Aligned_cols=48 Identities=4% Similarity=0.057 Sum_probs=32.0
Q ss_pred hcCcHHHHHHHHHHHHHhhcCC--cchhhHHHHHH------HHhhcCCHHHHHHHHH
Q 018924 96 KVGLLDKALAMLKKSEEQIKGA--KVNSAYNVILT------LYGKYGKKDDVLRIWE 144 (349)
Q Consensus 96 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~------~~~~~~~~~~a~~~~~ 144 (349)
..|++=+|-++|++.-.....+ .. ..|..||. ...+.|+...|..++.
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er-~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~ 99 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTES-KFLHGMVQVAAGAYKHFDFEDDDGMRSLFR 99 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3477777777777775543333 33 56666666 2346888999988888
No 364
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=25.67 E-value=2.2e+02 Score=21.57 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=22.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHH
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRY---TYCTRLSAYADASDHEGIDKILT 72 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~ 72 (349)
+...++.|+.+-+..+ .+.|..++.. -.+ .+...+..|+.+-+..+++
T Consensus 7 L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~ 57 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNL----ISQGWAVNIITADHVS-PLHEACLGGHLSCVKILLK 57 (261)
T ss_dssp HHHHHHHTCHHHHHHH----HHTTCCSSCCCTTCCC-HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHH
Confidence 3445556666544433 3445444322 122 2333445577665544444
No 365
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.42 E-value=78 Score=22.86 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 018924 12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60 (349)
Q Consensus 12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 60 (349)
....++.++..++...-.++++..+.+....|. .+..+|.--.+.+++
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELAR 157 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 334455566665555555666666666555553 344455444444444
No 366
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=24.83 E-value=1.7e+02 Score=20.01 Aligned_cols=8 Identities=25% Similarity=0.302 Sum_probs=3.0
Q ss_pred cCCHHHHH
Q 018924 133 YGKKDDVL 140 (349)
Q Consensus 133 ~~~~~~a~ 140 (349)
.|+.+...
T Consensus 18 ~g~~~~v~ 25 (165)
T 3twr_A 18 AGDVETVK 25 (165)
T ss_dssp HTCHHHHH
T ss_pred hCCHHHHH
Confidence 34433333
No 367
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.24 E-value=2.2e+02 Score=21.13 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=22.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 018924 24 YKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62 (349)
Q Consensus 24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 62 (349)
.+..+++.|+-.+.+|++.| .|.-..-..++.+.-..|
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 34577888888888888877 544333333343433333
No 368
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=24.19 E-value=2.5e+02 Score=21.70 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=7.1
Q ss_pred HHHhcCChHHHHHHH
Q 018924 57 AYADASDHEGIDKIL 71 (349)
Q Consensus 57 ~~~~~~~~~~a~~~~ 71 (349)
..+..|+.+-+..++
T Consensus 98 ~A~~~g~~~~v~~Ll 112 (285)
T 3d9h_A 98 EACLGGHLSCVKILL 112 (285)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHCCcHHHHHHHH
Confidence 334556655444333
No 369
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.89 E-value=1.2e+02 Score=22.32 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=23.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 018924 20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT 72 (349)
Q Consensus 20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 72 (349)
+...++.|+.+.+..+++.-.......|..-.+ .+...+..|+.+-+..+++
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~ 57 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRI-PLHWSVSFQAHEITSFLLS 57 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCC-HHHHHHHcCCHHHHHHHHh
Confidence 444566677666655554432211112222222 2333445566654444443
No 370
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.76 E-value=3.2e+02 Score=22.76 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCC--------------C--cchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924 161 ISSLLKLDDLESAEKIFEEWESQALCY--------------D--TRIPNFLIDVYCRNGLLEKAENLVNHEK 216 (349)
Q Consensus 161 i~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 216 (349)
+..+....+.+++.+.++.+...-..+ . ..+...+...|...|+.+.|..++++..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344445566666666666654431000 1 1122334445555666666666666554
No 371
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.72 E-value=3.5e+02 Score=23.31 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=6.6
Q ss_pred HHHHhhcCCHHHHHHH
Q 018924 127 LTLYGKYGKKDDVLRI 142 (349)
Q Consensus 127 ~~~~~~~~~~~~a~~~ 142 (349)
.+.+...|++++|.++
T Consensus 368 F~~l~~~g~y~~AA~~ 383 (494)
T 1bpo_A 368 FNALFAQGNYSEAAKV 383 (494)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3333444444444433
No 372
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=23.30 E-value=1.3e+02 Score=24.46 Aligned_cols=77 Identities=5% Similarity=0.078 Sum_probs=50.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc-HHHHH--HHHHH----HhhcCcHHHHHHH
Q 018924 34 SLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD-WVIYA--TVGNG----YGKVGLLDKALAM 106 (349)
Q Consensus 34 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~--~li~~----~~~~g~~~~a~~~ 106 (349)
+++..+.+.|+.|...++.-++..+++.=.++.+..+|+.+. ..|.... ...|- +++.. .....++++...+
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l-~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~ 308 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQ-SEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 308 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHT-TSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 466667777888887888888888887777888889998887 5454322 22222 22222 2335777888877
Q ss_pred HHHHH
Q 018924 107 LKKSE 111 (349)
Q Consensus 107 ~~~~~ 111 (349)
++.+.
T Consensus 309 L~~~p 313 (345)
T 2qfz_A 309 LQNLP 313 (345)
T ss_dssp HTSCS
T ss_pred HHcCC
Confidence 77654
No 373
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.18 E-value=1.4e+02 Score=25.63 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch--------hhHHH-HHHHHhcCCCHHHHHHHHHHHHH
Q 018924 192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV--------KSWYY-LATGYRQNSQIHKAVEAMKKVLA 252 (349)
Q Consensus 192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~-li~~~~~~~~~~~a~~~~~~~~~ 252 (349)
.+.|...|.+.+++..+..+++.+...+..|+. .+|.. +...++..+++.+|.+.+..+..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 455666667777777777777666655442221 12222 22334456666666665555544
No 374
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.00 E-value=1.4e+02 Score=18.36 Aligned_cols=34 Identities=12% Similarity=-0.048 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924 100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG 134 (349)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (349)
.++|...|.+|....-..+. .+|...+...+.-.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~Dp 49 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDP 49 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCC
Confidence 46677777777654333333 47777766555433
No 375
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.63 E-value=3.9e+02 Score=23.40 Aligned_cols=172 Identities=10% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhhH
Q 018924 48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSAY 123 (349)
Q Consensus 48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (349)
...+|.+++.|...+.++.|..+..+.. -.....+..-+....-..++ .+++.+|.+.|.......+......-+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Q ss_pred HHHHHHHh----------------hcCCHHHHHHHHH-HHHhhccCChhhHHHHH----HHHhccCCHHHHHHHHHHHHh
Q 018924 124 NVILTLYG----------------KYGKKDDVLRIWE-LYKKAVKVLNNGYRNVI----SSLLKLDDLESAEKIFEEWES 182 (349)
Q Consensus 124 ~~l~~~~~----------------~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~~~~ 182 (349)
...+.-|. .....+.++.-|- ....--..|...|...+ ..+.+.|.+.-..++.....+
T Consensus 310 r~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir 389 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIK 389 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHH
Q ss_pred cCCCCCcchHH----HHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924 183 QALCYDTRIPN----FLIDVYCRNGLLEKAENLVNHEKLKGR 220 (349)
Q Consensus 183 ~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~ 220 (349)
.++.-=..+|+ .-+..-......++|+.+...|...|.
T Consensus 390 ~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 390 TGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
No 376
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=22.60 E-value=1.9e+02 Score=21.19 Aligned_cols=72 Identities=8% Similarity=-0.023 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH
Q 018924 204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA 283 (349)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 283 (349)
++....++.+.++. .+-+-.-.-.+|.++.+.|++++|.++..++... +..... ..+.+++.-|
T Consensus 14 ~l~~~~~~~~~LR~--qrHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~-------------~q~~~~-~~~i~~P~la 77 (192)
T 1ixm_A 14 DTALTNELIHLLGH--SRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID-------------AKHESK-LSNLKTPHLA 77 (192)
T ss_dssp CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------HHHHHH-HHTTTCHHHH
T ss_pred HHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHHHH-HHhCCCHHHH
Confidence 44555555555555 2222222345788899999999999999988764 111111 4456666666
Q ss_pred HHHHHHHh
Q 018924 284 ENFIELLN 291 (349)
Q Consensus 284 ~~~~~~~~ 291 (349)
--++....
T Consensus 78 ~lLl~K~~ 85 (192)
T 1ixm_A 78 FDFLTFNW 85 (192)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHH
Confidence 55555443
No 377
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=22.27 E-value=2.6e+02 Score=22.62 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=22.7
Q ss_pred HHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924 212 VNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253 (349)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 253 (349)
++.+.+.|+.|...++.-++..|.+.=.++.+.++|+.....
T Consensus 216 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 216 FAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 344444555555555555555555555555566666655544
No 378
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.24 E-value=56 Score=21.96 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 018924 16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDK 69 (349)
Q Consensus 16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 69 (349)
|.-.|...+.+++.+-|.++++...+.| +...|.+.+-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3334555555666666666666665544 45555566655555555554443
No 379
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=21.88 E-value=2.7e+02 Score=21.33 Aligned_cols=23 Identities=9% Similarity=-0.184 Sum_probs=11.9
Q ss_pred ccHHHHHHHHHHHHhc-CChhHHH
Q 018924 11 RTTVVYNSMLKLYYKT-GNFEKLD 33 (349)
Q Consensus 11 p~~~~~~~li~~~~~~-g~~~~a~ 33 (349)
|....|...+...+.. |++.+++
T Consensus 127 p~~~aYt~~ll~~a~~~g~~~~~l 150 (248)
T 3no6_A 127 PSGDHYIKHMYFNAFARENAAFTI 150 (248)
T ss_dssp HHHHHHHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3445555555555555 5555443
No 380
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.52 E-value=2.5e+02 Score=20.78 Aligned_cols=42 Identities=7% Similarity=-0.141 Sum_probs=27.1
Q ss_pred HHHHH---HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 018924 19 MLKLY---YKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60 (349)
Q Consensus 19 li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 60 (349)
+|+++ .+..+++.|+-.+.+|++.|-.|.-..-..++.+.-.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 44555 4568888999999999888866554444444444433
No 381
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.98 E-value=1.3e+02 Score=17.81 Aligned_cols=34 Identities=6% Similarity=0.034 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc
Q 018924 99 LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY 133 (349)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (349)
..++|.+.|.+|....-..+. .+|...+..+..-
T Consensus 13 t~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~D 46 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSN-ASWEQAMKMIIND 46 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccC
Confidence 356777777777654333333 4777777655543
No 382
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.42 E-value=1.7e+02 Score=18.44 Aligned_cols=33 Identities=6% Similarity=0.089 Sum_probs=18.6
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 018924 25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA 57 (349)
Q Consensus 25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 57 (349)
..|++-+|-++++..-.....|....|..+|..
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~ 45 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILL 45 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 347777777777776655422334455555543
No 383
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.30 E-value=2.9e+02 Score=21.09 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHHHHHHHh
Q 018924 262 PSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLETLRELYG 323 (349)
Q Consensus 262 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~~~~m~~ 323 (349)
++...-...+.++.+.|+......+...+.. ++ .-...+ ++.+.| ..+...+.++.+
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~~~~~~L~~~l~ 262 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELKK---NT--VYDDIIEAAGELGDKTLLPVLDTMLY 262 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS---SS--CCHHHHHHHHHHCCGGGHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC---cc--HHHHHHHHHHhcCchhhhHHHHHHHh
Confidence 3444444445555555544333333333322 11 122233 555555 555555555544
Done!