Your job contains 1 sequence.
>018927
MQQSNGGDANAAAAAAAAVSGGAGGGSQPTPQQPYHWVPPHQQQWMAMMQYPAAAMAMMQ
QQQMMMYPHHYMPYGGGGHPYYQNGGGVKQQQQQQHGLSNGKQNGSNNNFTNDETKTIWI
GDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS
LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK
VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSS
QALVLAGGPGSNGARVQGSQSDGESNNATVSPSFPCFCKHCQVSVSQLL
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018927
(349 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 842 4.4e-84 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 810 1.1e-80 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 804 4.7e-80 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 660 3.3e-67 2
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 657 5.4e-67 2
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 645 3.3e-63 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 625 4.3e-61 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 617 3.1e-60 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 584 9.6e-57 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 569 3.7e-55 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 477 2.1e-45 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 471 9.1e-45 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 390 3.5e-36 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 390 1.1e-35 1
UNIPROTKB|E2QV44 - symbol:TRNAU1AP "Uncharacterized prote... 379 5.1e-35 1
UNIPROTKB|Q9NX07 - symbol:TRNAU1AP "tRNA selenocysteine 1... 379 5.1e-35 1
UNIPROTKB|I3LHP4 - symbol:TRNAU1AP "Uncharacterized prote... 379 5.1e-35 1
UNIPROTKB|Q1RMJ7 - symbol:TRNAU1AP "tRNA selenocysteine 1... 378 6.5e-35 1
RGD|619995 - symbol:Secp43 "tRNA selenocysteine associate... 374 1.7e-34 1
MGI|MGI:1919037 - symbol:Trnau1ap "tRNA selenocysteine 1 ... 373 2.2e-34 1
UNIPROTKB|E1BZH5 - symbol:TRNAU1AP "Uncharacterized prote... 365 1.5e-33 1
ZFIN|ZDB-GENE-040426-2386 - symbol:trnau1apl "tRNA seleno... 350 6.0e-32 1
FB|FBgn0031607 - symbol:CG15440 species:7227 "Drosophila ... 301 9.4e-27 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 293 6.6e-26 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 288 2.2e-25 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 287 7.4e-25 1
ZFIN|ZDB-GENE-050522-502 - symbol:trnau1ap "tRNA selenocy... 280 1.6e-24 1
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 280 3.4e-24 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 278 4.1e-24 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 271 1.7e-23 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 273 2.8e-23 1
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 237 2.8e-23 2
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 262 6.4e-22 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 260 7.3e-22 1
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 257 8.9e-22 1
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 257 9.7e-22 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 257 9.7e-22 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 257 9.7e-22 1
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 257 9.7e-22 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 257 9.7e-22 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 257 9.7e-22 1
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 252 2.5e-21 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 249 5.6e-21 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 249 5.6e-21 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 236 4.8e-20 2
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 238 6.5e-20 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 233 1.5e-19 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 232 1.9e-19 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 231 2.5e-19 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 238 2.5e-19 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 232 3.5e-19 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 233 4.4e-19 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 233 5.3e-19 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 234 6.4e-19 1
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 232 8.5e-19 1
ASPGD|ASPL0000000406 - symbol:AN6501 species:162425 "Emer... 226 1.1e-18 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 227 1.5e-18 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 226 1.7e-18 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 226 1.8e-18 1
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 225 1.8e-18 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 222 5.5e-18 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 222 6.1e-18 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 217 7.5e-18 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 221 1.3e-17 1
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun... 214 1.6e-17 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 217 2.0e-17 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 217 2.0e-17 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 217 2.0e-17 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 216 2.5e-17 1
FB|FBgn0015818 - symbol:Spx "Spliceosomal protein on the ... 196 2.9e-17 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 208 3.4e-17 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 208 3.4e-17 2
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 205 1.4e-16 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 206 1.6e-16 1
POMBASE|SPAC31G5.01 - symbol:sap49 "U2 snRNP-associated R... 204 3.1e-16 1
GENEDB_PFALCIPARUM|PFF1425w - symbol:PFF1425w "RNA bindin... 212 3.7e-16 1
UNIPROTKB|C6KTC9 - symbol:PFF1425w "RNA binding protein, ... 212 3.7e-16 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 205 3.8e-16 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 205 3.9e-16 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 210 4.4e-16 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 205 4.6e-16 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 205 4.6e-16 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 205 4.8e-16 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 205 4.8e-16 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 205 4.8e-16 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 205 4.8e-16 1
ZFIN|ZDB-GENE-040809-2 - symbol:rbm42 "RNA binding motif ... 205 5.2e-16 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 209 5.4e-16 1
WB|WBGene00004723 - symbol:sap-49 species:6239 "Caenorhab... 204 5.9e-16 1
UNIPROTKB|Q09442 - symbol:sap-49 "Splicing factor 3B subu... 204 5.9e-16 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 208 7.1e-16 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 208 7.1e-16 1
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 198 8.2e-16 2
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 204 8.9e-16 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 207 9.1e-16 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 206 1.0e-15 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 206 1.2e-15 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 206 1.2e-15 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 206 1.2e-15 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 206 1.2e-15 1
WARNING: Descriptions of 779 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 155/221 (70%), Positives = 184/221 (83%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
+ D+ KT+W+GDL HWMDET+LH+CFSHTG+V +VKVIRNK T QSEGYGFVEF SRAAA
Sbjct: 103 SGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAA 162
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFS-GSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
E+VLQ+YSGS+MPN+DQPFR+NWA+FS G R E DLS+FVGDL+PDVTD +L ETF
Sbjct: 163 EEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETF 222
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
S +YPSVK AKV+IDSNTGR+KGYGFVRFGDENERSRA+TEMNG YCS+R MR+ +ATPK
Sbjct: 223 SDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Query: 290 KASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATV 330
+A A++LAGG GSNG+ GSQSDGES NAT+
Sbjct: 283 RAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATI 323
Score = 103 (41.3 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVE 163
G N ++++GDL + + LH FS V + KV+ + TG+S+GYGFV
Sbjct: 191 GEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVR 250
Query: 164 FYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195
F + L +G+ N + R+ AT
Sbjct: 251 FGDENERSRALTEMNGAYCSN--RQMRVGIAT 280
Score = 100 (40.3 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 198 GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257
GS E+ ++ +IFVG + PDV D L++ FS ++ V K+ + KG GFV+
Sbjct: 311 GSQSDGES-TNATIFVGGIDPDVIDEDLRQPFS-QFGEVVSVKIPVG------KGCGFVQ 362
Query: 258 FGDENERSRAMTEMNGVYCSSRPMRIDVA-TPKK 290
F D A+ +NG +R+ +P K
Sbjct: 363 FADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNK 396
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 149/220 (67%), Positives = 185/220 (84%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
++++ KTIWIGDL WMDE++LH+CFS G+V++VK+IRNKQTGQSE YGFVEF + AAA
Sbjct: 79 SSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAA 138
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EKVLQSY+G++MPNT+QPFRLNWA FS ++R E SD SIFVGDLA DVTD++L++TF+
Sbjct: 139 EKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFA 198
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
S+YPS+KGAKV++D+NTG +KGYGFVRFGDE+ERSRAMTEMNGVYCSSR MRI VATPKK
Sbjct: 199 SRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKK 258
Query: 291 ASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATV 330
S A++L+GG SNGA GSQSDG+S+N T+
Sbjct: 259 PSAHEQYSSQ-AVILSGGYASNGAATHGSQSDGDSSNTTI 297
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 152/219 (69%), Positives = 178/219 (81%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
D+ KT+W+GDL HWMDET+LH CFSHT +V +VKVIRNKQT QSEGYGFVEF SR+AAE+
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFS-GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
LQS+SG MPN +QPFRLNWA+FS G R +E DLSIFVGDLAPDV+D++L ETF+
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
+YPSVKGAKV+IDSNTGR+KGYGFVRFGDENERSRAMTEMNG +CSSR MR+ +ATPK+A
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 292 SGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATV 330
+ AL LAGG G NG S SDGESNN+T+
Sbjct: 296 AAYGQQNGSQALTLAGGHGGNG-----SMSDGESNNSTI 329
Score = 126 (49.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 57/208 (27%), Positives = 85/208 (40%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVE 163
G N +I++GDL + + L F+ V KV+ + TG+S+GYGFV
Sbjct: 202 GEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVR 261
Query: 164 F-----YSRAAAE------KVLQSYSGSLMPNTDQPF-RLNWA---TFSGSDRRTEACSD 208
F SRA E Q G P + + N + T +G + SD
Sbjct: 262 FGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSD 321
Query: 209 -----LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263
+IFVG L DVT+ L + FS + V K+ + KG GFV+F +
Sbjct: 322 GESNNSTIFVGGLDADVTEEDLMQPFSD-FGEVVSVKIPVG------KGCGFVQFANRQS 374
Query: 264 RSRAMTEMNGVYCSSRPMRIDVA-TPKK 290
A+ +NG +R+ +P K
Sbjct: 375 AEEAIGNLNGTVIGKNTVRLSWGRSPNK 402
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 660 (237.4 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 126/193 (65%), Positives = 154/193 (79%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQ--VVNVKVIRNKQTGQSEGYGF 161
N N F N E KTIW+GDL HWMDE +L++ F+ + +V+VKVIRNK G SEGYGF
Sbjct: 90 NKHQNAF-NGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGF 148
Query: 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS-DLSIFVGDLAPDV 220
VEF S A+KVL+ ++G+ MPNTDQPFRLNWA+FS ++R E DLSIFVGDL+PDV
Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDV 208
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
+D++L ETFS KYPSVK AKV++D+NTGR+KGYGFVRFGDENER++AMTEMNGV CSSR
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRA 268
Query: 281 MRIDVATPKKASG 293
MRI ATP+K +G
Sbjct: 269 MRIGPATPRKTNG 281
Score = 140 (54.3 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 61/246 (24%), Positives = 97/246 (39%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAA 170
N +I++GDL + + LH FS V KV+ + TG+S+GYGFV F
Sbjct: 193 NGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENER 252
Query: 171 EKVLQSYSG------SLMPNTDQPFRLNWATFSG----SDRRTEACSDL---SIFVGDLA 217
K + +G ++ P + N G + T D+ +IFVG L
Sbjct: 253 TKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLD 312
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277
VTD L++ F+ ++ + K+ + KG GFV+F + A+ ++NG
Sbjct: 313 SSVTDEDLKQPFN-EFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIG 365
Query: 278 SRPMRIDVA-TPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATVSPSFPC 336
+ +R+ P GG NG Q D A +P +P
Sbjct: 366 KQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPA--APYYPM 423
Query: 337 FCKHCQ 342
+ H Q
Sbjct: 424 YGGHQQ 429
Score = 41 (19.5 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 29 PTPQQPYHWVPPH 41
P P PYH P H
Sbjct: 68 PPPFPPYHQYPNH 80
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 657 (236.3 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 126/193 (65%), Positives = 154/193 (79%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQ--VVNVKVIRNKQTGQSEGYGF 161
N N F N E KTIW+GDL +WMDE +L++ F+ + +V++KVIRNK G SEGYGF
Sbjct: 92 NKHQNAF-NGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGF 150
Query: 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS-DLSIFVGDLAPDV 220
VEF S A+KVLQ ++G+ MPNTDQPFRLNWA+FS ++R E DLSIFVGDLAPDV
Sbjct: 151 VEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDV 210
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
+D++L ETFS KYPSVK AKV++D+NTGR+KGYGFVRFGDENER++AMTEMNGV CSSR
Sbjct: 211 SDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRA 270
Query: 281 MRIDVATPKKASG 293
MRI ATP+K +G
Sbjct: 271 MRIGPATPRKTNG 283
Score = 148 (57.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 64/248 (25%), Positives = 102/248 (41%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAA 170
N +I++GDL + + LH FS V KV+ + TG+S+GYGFV F
Sbjct: 195 NGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENER 254
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATF--------------SGSDRRTEACS-DLSIFVGD 215
K + +G + + + R+ AT SG+ R+E + + +IFVG
Sbjct: 255 TKAMTEMNG--VKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGG 312
Query: 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275
L VTD L++ FS ++ + K+ + KG GFV+F + A+ ++NG
Sbjct: 313 LDSSVTDEDLKQPFS-EFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTV 365
Query: 276 CSSRPMRIDVA-TPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATVSPSF 334
+ +R+ P GG NG Q D A +P +
Sbjct: 366 IGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPA--APYY 423
Query: 335 PCFCKHCQ 342
P + H Q
Sbjct: 424 PMYGGHQQ 431
Score = 42 (19.8 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 29 PTPQQPYHWVPPH 41
P P PYH P H
Sbjct: 70 PMPFSPYHQYPNH 82
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 125/216 (57%), Positives = 160/216 (74%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T +E +T+WIGDL +W+DE +L +CFS TG++V+VKVIRNK TGQ EGYGF+EF S AAA
Sbjct: 19 TLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAA 78
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
E+ LQ+Y+G+ MP T+ FRLNWA+F GS ++ +A D SIFVGDLAPDVTD +LQETF
Sbjct: 79 ERTLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
Y SV+GAKV+ D +TGR+KGYGFV+F +E+ER+RAM EMNG+YCS+RPMRI ATPKK
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
Query: 291 ASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESN 326
G A+ P + A VQ + ES+
Sbjct: 198 NVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESD 233
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 120/181 (66%), Positives = 146/181 (80%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T DE +T+WIGDL +WMDE FL+ CF+HTG++V+ KVIRNKQTGQ EGYGF+EF S AAA
Sbjct: 57 TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 116
Query: 171 EKVLQSYSGSLMPN-TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
E+VLQ+++ + +P+ DQ FRLNWA+ S D+R ++ D +IFVGDLA DVTD IL ETF
Sbjct: 117 ERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETF 175
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ YPSVKGAKV+ID TGRTKGYGFVRF DE+E+ RAMTEMNGV CS+RPMRI A K
Sbjct: 176 RASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
Query: 290 K 290
K
Sbjct: 236 K 236
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 52/194 (26%), Positives = 90/194 (46%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
TI++GDL + + L F + V KV+ ++ TG+++GYGFV F + + +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 176 SYSGSLMPNTDQPFRLNWA------TFSGSDRRTEAC--------SDLSIFVGDLAPDVT 221
+G +P + +P R+ A T ++ A ++ ++FVG L VT
Sbjct: 216 EMNG--VPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
D L+ FS +Y + K+ G K GFV+F +++ A+ +NGV +
Sbjct: 274 DDHLKNVFS-QYGEIVHVKI----PAG--KRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Query: 282 RIDVA-TPK-KASG 293
R+ +P K SG
Sbjct: 327 RLSWGRSPSNKQSG 340
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 115/181 (63%), Positives = 145/181 (80%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
+E +++WIGDL +WMDE +L CF HTG++V+ KVIRNKQTGQSEGYGF+EF S AAAE
Sbjct: 81 NEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAET 140
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
+LQ+Y+G+LMPN +Q FR+NWA+ +RR ++ ++ +IFVGDLA DVTD ILQETF S
Sbjct: 141 ILQTYNGTLMPNVEQNFRMNWASLGAGERRDDS-AEHTIFVGDLAADVTDYILQETFKSV 199
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
Y SV+GAKV+ D TGR+KGYGFV+F DE+E+ RAMTEMNGV CS+RPMRI A KK
Sbjct: 200 YSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPV 259
Query: 293 G 293
G
Sbjct: 260 G 260
Score = 148 (57.2 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 52/194 (26%), Positives = 90/194 (46%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVE 163
G+ + TI++GDL + + L F V KV+ ++ TG+S+GYGFV+
Sbjct: 165 GAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVK 224
Query: 164 FYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS---GSDRR--------TEACSD---L 209
F + + + +G L + +P R+ A G+ ++ T+ SD
Sbjct: 225 FADESEQLRAMTEMNGVLC--STRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNT 282
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+IFVG L P V + L++ FS Y + K++ G K GFV+FG +A++
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSP-YGELVHVKIV----AG--KRCGFVQFGTRASAEQALS 335
Query: 270 EMNGVYCSSRPMRI 283
+NG + +R+
Sbjct: 336 SLNGTQLGGQSIRL 349
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
TI++G L + E L FS G++V+VK++ K+ G FV+F +RA+AE+ L S
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCG------FVQFGTRASAEQALSS 336
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTE 204
+G+ + Q RL+W S S ++T+
Sbjct: 337 LNGTQLGG--QSIRLSWGR-SPSSKQTD 361
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 111/189 (58%), Positives = 142/189 (75%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
GS N + + K++WIGDL WMDE ++ + F+ +G+ + KVIRNK TGQSEGYGF+EF
Sbjct: 49 GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEF 108
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTD 222
S + AE+VLQ+Y+G+ MP+T+Q FRLNWA ++R TE D +IFVGDLAP+VTD
Sbjct: 109 VSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEG-PDHTIFVGDLAPEVTD 167
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
+L +TF + Y SVKGAKV++D TGR+KGYGFVRF DENE+ RAMTEMNG YCS+RPMR
Sbjct: 168 YMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMR 227
Query: 283 IDVATPKKA 291
I A K A
Sbjct: 228 IGPAANKNA 236
Score = 131 (51.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 48/198 (24%), Positives = 88/198 (44%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
T TI++GDL + + L + F + G V KV+ ++ TG+S+GYGFV F
Sbjct: 149 TEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENE 208
Query: 170 AEKVLQSYSGSLMPNTDQPFRLN--------------WATFSGSDRRTEACSDLSIFVGD 215
+ + +G + +P R+ + G++ ++ +IFVG
Sbjct: 209 QMRAMTEMNGQYC--STRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGG 266
Query: 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275
L +VTD L+ F ++ + K+ G K GFV++ ++ A++ +NG
Sbjct: 267 LDANVTDDELKSIFG-QFGELLHVKI----PPG--KRCGFVQYANKASAEHALSVLNGTQ 319
Query: 276 CSSRPMRIDVA-TPKKAS 292
+ +R+ +P K S
Sbjct: 320 LGGQSIRLSWGRSPNKQS 337
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 109/186 (58%), Positives = 134/186 (72%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
GS N + E +++WIGDL WMDE +L N F TG+ KVIRNKQ G SEGYGF+EF
Sbjct: 69 GSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEF 128
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
+ A AE+ LQ+Y+G+ MP+++Q FRLNWA +RR + ++FVGDLAPDVTD +
Sbjct: 129 VNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHM 188
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L ETF + Y SVKGAKV+ D TGR+KGYGFVRF DE+E+ RAMTEMNG YCSSRPMR
Sbjct: 189 LTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTG 248
Query: 285 VATPKK 290
A KK
Sbjct: 249 PAANKK 254
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 42/179 (23%), Positives = 79/179 (44%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
T+++GDL + + L F V KV+ ++ TG+S+GYGFV F + + +
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 176 SYSG---SLMPN------TDQPFRLNWATFSGSDRRTEAC--SDLSIFVGDLAPDVTDSI 224
+G S P +P + A++ + + ++ +IFVG + VT+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
L+ F G V + G K GFV++ + +A++ +NG + +R+
Sbjct: 294 LKSVFGQF-----GELVHVKIPAG--KRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 94/183 (51%), Positives = 128/183 (69%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
ND KT+W+G+L WMDE F+ +S G+ VNVKVIR++Q+G + GY FVEF S AA
Sbjct: 43 NDSAKTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGNA-GYCFVEFPSSEAA 101
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGS-DRRTEACSDLSIFVGDLAPDVTDSILQETF 229
K L +GS +PN+ + F+LNWA+ G DRR E + SIFVGDL P+V + +L F
Sbjct: 102 TKAL-GLNGSPVPNSQRVFKLNWASGGGLVDRRDERGPEYSIFVGDLGPEVNEFVLVSLF 160
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+++PS K AK++ D+ TG+++GYGFVRF DE+++ RA+ EM GVYC +RPMRI ATPK
Sbjct: 161 QARFPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTATPK 220
Query: 290 KAS 292
S
Sbjct: 221 TRS 223
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 95/186 (51%), Positives = 131/186 (70%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE-GYGFVEFYSRAAA 170
N+ T+W+G+L W+DE F+ N + G+ VNVK+IR+K +G+S GY FV+F S AAA
Sbjct: 61 NEGKTTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAA 120
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSG-SDR-RTEACSDLSIFVGDLAPDVTDSILQET 228
K L S +G+ MPNT++ F+LNWAT G +DR R + + SIFVGDL P+V + +L
Sbjct: 121 AKAL-SLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSL 179
Query: 229 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
F S++PS K AK++ D +G ++GYGFVRF DEN++ RA++EM GVYC +RPMRI ATP
Sbjct: 180 FQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATP 239
Query: 289 K-KASG 293
K K G
Sbjct: 240 KNKGPG 245
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 79/191 (41%), Positives = 116/191 (60%)
Query: 104 NGSNNNFTNDET----KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY 159
N SN + DE T+W+G+L W+ E F+ ++ G+ V VK+IRN+ TG + GY
Sbjct: 77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136
Query: 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG-SDRRTEACSDLSIFVGDLAP 218
FVEF S A + S + +P T+ F+LNWA+ G ++ S+ SIFVGDL+P
Sbjct: 137 CFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSP 195
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+V + + F+S+Y S K AK++ D T ++GYGFVRF DEN++ A+ EM G C
Sbjct: 196 NVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGD 255
Query: 279 RPMRIDVATPK 289
RP+R+ +ATPK
Sbjct: 256 RPIRVGLATPK 266
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 390 (142.3 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 82/181 (45%), Positives = 107/181 (59%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE--GYGFVEFYSRAAAEKVL 174
T+W+GDL WMD TF+ ++ + VNVKV+R+K + Y FV+F S AAAE+ L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFSSK 232
Y+ +++P F+LNWAT G D SIFVGDL P DS L TF S
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK-KA 291
YPS AK+I+D TG ++ YGFVRF E E+ A+ M G C RP+RI VA+PK +A
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRA 265
Query: 292 S 292
S
Sbjct: 266 S 266
Score = 114 (45.2 bits), Expect = 0.00090, P = 0.00090
Identities = 51/202 (25%), Positives = 90/202 (44%)
Query: 107 NNNFTN-DETKTIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
+NNF + D +I++GDL +++ L F S + K+I + TG S YGFV F
Sbjct: 172 HNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRF 231
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT-----------------FSGSDRRT--EA 205
S + L G L +P R++ A+ S S+R+ +
Sbjct: 232 SSEKEQQHALMHMQGYLCQG--RPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDL 289
Query: 206 CS----DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261
CS + ++FVG LA ++++ LQ F + + K+ KG GFV++ ++
Sbjct: 290 CSMDPLNTTVFVGGLASNLSEKDLQVCFQP-FGRILNIKIPFG------KGCGFVQYSEK 342
Query: 262 NERSRAMTEMNGVYCSSRPMRI 283
+ +A+ M G + +R+
Sbjct: 343 SAAEKAINTMQGALVGTSHIRL 364
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 81/177 (45%), Positives = 114/177 (64%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 289
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 81/177 (45%), Positives = 114/177 (64%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 289
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 81/177 (45%), Positives = 114/177 (64%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 289
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 80/177 (45%), Positives = 114/177 (64%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 289
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G + S+P+R+ VA PK
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPK 176
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 80/177 (45%), Positives = 113/177 (63%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 289
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 80/177 (45%), Positives = 113/177 (63%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 289
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK
Sbjct: 121 PSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
>UNIPROTKB|E1BZH5 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:AADN02043953
IPI:IPI00576069 RefSeq:XP_417743.3 ProteinModelPortal:E1BZH5
Ensembl:ENSGALT00000001994 GeneID:419597 KEGG:gga:419597 CTD:419597
Uniprot:E1BZH5
Length = 287
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 79/177 (44%), Positives = 112/177 (63%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G++V +VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL DV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTADVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 289
PS +G KV++D G +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK
Sbjct: 121 PSCRGGKVVLDQ-AGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 76/182 (41%), Positives = 112/182 (61%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ FS G+ VK+I ++ TG S GY FVE A+ ++ +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 176 SYSGSLMPNTDQP--FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+P ++ P F+LN+AT+ +R E + S+FVGDL +V D L + F K+
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKF 123
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRIDVATPK--K 290
PS KGAKV+ D G ++GYGFV+F DENE+ +A+ E N +P+RI +A K K
Sbjct: 124 PSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNK 182
Query: 291 AS 292
AS
Sbjct: 183 AS 184
>FB|FBgn0031607 [details] [associations]
symbol:CG15440 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
eggNOG:COG0724 GeneTree:ENSGT00510000047100 EMBL:AY089645
RefSeq:NP_608837.2 UniGene:Dm.4903 SMR:Q8SXG7 IntAct:Q8SXG7
MINT:MINT-300703 STRING:Q8SXG7 EnsemblMetazoa:FBtr0077454
GeneID:33652 KEGG:dme:Dmel_CG15440 UCSC:CG15440-RA
FlyBase:FBgn0031607 InParanoid:Q8SXG7 OMA:EREFSVW OrthoDB:EOG4F7M1N
ChiTaRS:CG15440 GenomeRNAi:33652 NextBio:784624 Uniprot:Q8SXG7
Length = 336
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 74/179 (41%), Positives = 106/179 (59%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
+W+G L +M E F+ F G+ V+++RNK TG+ GY FV F S A +
Sbjct: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67
Query: 177 YSGSLMPNTDQ--PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+G +P T+ FRLN A+ S E + S++VGDL+ DV D L + FSSK+
Sbjct: 68 LNGKPIPGTNPIVRFRLNSASNSYKLPGNER--EFSVWVGDLSSDVDDYQLYKVFSSKFT 125
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
S+K AKVI+DS G +KGYGFVRFG E+E+ A+ +MNG + ++P++I A PK S
Sbjct: 126 SIKTAKVILDS-LGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKS 183
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 71/220 (32%), Positives = 119/220 (54%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
F +++++G++ + E L F+ TG V + K+IR ++ YGFV ++ R +
Sbjct: 53 FDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRS 108
Query: 170 AEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
A + S +G + QP ++NWA +G +R + S +IFVGDL+P+VTD+ L ++F
Sbjct: 109 AALAILSLNGRHL--FGQPIKVNWAYATG--QREDTSSHFNIFVGDLSPEVTDATLYQSF 164
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
S + S A+V+ D TGR++G+GFV F ++ + A+ EMNG + SSR +R + AT
Sbjct: 165 SV-FSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG 223
Query: 290 KASGXXXXXXXXALV--LAGGPGSNGARVQGSQSDGESNN 327
SG V L G +G ++ E+N+
Sbjct: 224 ATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETP-ENNS 262
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 71/221 (32%), Positives = 117/221 (52%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
F +++++G++ + E L F+ TG V + K+IR +++ YGFV ++ R +
Sbjct: 48 FDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRS 103
Query: 170 AEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
A + S +G + QP ++NWA SG +R + S +IFVGDL+P+VTD++L F
Sbjct: 104 AGLAILSLNGRHL--FGQPIKVNWAYASG--QREDTSSHFNIFVGDLSPEVTDAMLFTCF 159
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
S YP+ A+V+ D TGR++G+GFV F ++ + A+ E+ G + SR +R + AT
Sbjct: 160 SV-YPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKG 218
Query: 290 KASGXXXXXXXXALV--LAGGPGSNGARVQGSQSDGESNNA 328
SG V L G +G + + NNA
Sbjct: 219 ATSGEDKQSSDSKSVVELTSGVSEDGKDT--TNGEAPENNA 257
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 287 (106.1 bits), Expect = 7.4e-25, P = 7.4e-25
Identities = 62/175 (35%), Positives = 102/175 (58%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ-TGQSEGYGFVEFYSRAAAEKVL 174
+ +++G L + E L F TG V++VK+I +K + YGFVEF AAE+ +
Sbjct: 90 RALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAM 149
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
Q+ +G + ++ R+NWA S + + + + IFVGDL+ +V D +L + FS+ +
Sbjct: 150 QTLNGRRIHQSE--IRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA-FG 206
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
SV A+V+ D TGR++GYGFV F + + +A+T M+G + SR +R + A K
Sbjct: 207 SVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQK 261
Score = 142 (55.0 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 35/95 (36%), Positives = 52/95 (54%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
N +N T++ I++GDL + +++ L FS G V +V+ + +TG+S GYGFV
Sbjct: 171 NTANKEDTSNHFH-IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVA 229
Query: 164 FYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG 198
F RA AEK L S G + + + R NWA G
Sbjct: 230 FRERADAEKALTSMDGEWLGS--RAIRCNWANQKG 262
Score = 63 (27.2 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 15/82 (18%), Positives = 36/82 (43%)
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
+VG+L P T + + P + +I++ +G+ F++ + A+ ++
Sbjct: 311 YVGNLTPYTTQNDI-------VPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQL 363
Query: 272 NGVYCSSRPMRIDVATPKKASG 293
NG + RP++ + +G
Sbjct: 364 NGYNVNGRPLKCSWGKDRPPTG 385
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 61/175 (34%), Positives = 101/175 (57%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+G+L +MDE F+ F+ G+ VV +++IR+K TG++ GYGFVE A E+ L+
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G +P P R + S ++ E+ S S+FV DL PDV D +L E F + S
Sbjct: 63 KVNGKPLPGATPPKRFKLSR-SNYGKQGES-STFSLFVSDLTPDVDDGMLYEFFHYHFSS 120
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMRIDVATPK 289
K+++D+N G +K GFV F E E+ RA+ ++ G + +R+ +A+ +
Sbjct: 121 CCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 280 (103.6 bits), Expect = 3.4e-24, P = 3.4e-24
Identities = 62/175 (35%), Positives = 111/175 (63%)
Query: 118 IWIGDLF-HWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+W+GDL W +E+ + N ++ + +VK++R++ Y FV F + + + +Q
Sbjct: 85 MWMGDLDPQWTEES-IDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDLAIQ 143
Query: 176 SYSGSLMPNTDQPFRLNWA--TFSGS-DRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
+G +P++++ F+LN++ +GS DR T + ++ SIF+GDLAP+V+D+ L F+ K
Sbjct: 144 R-NGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMK 202
Query: 233 YPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
YP+ +K AKVI DS+T ++KG+GFV+F + +RA+ EM G S+ +R+ +A
Sbjct: 203 YPNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLA 257
Score = 111 (44.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 105 GSNNNFTNDETK-TIWIGDLFHWMDETFLHNCFS--HTGQVVNVKVIRNKQTGQSEGYGF 161
GS++ TN + +I+IGDL + + L+N F+ + Q+ KVI + T +S+G+GF
Sbjct: 167 GSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKYPNQIKQAKVITDSSTRKSKGFGF 226
Query: 162 VEFYSRAAAEKVLQSYSG 179
V+F+S + L+ G
Sbjct: 227 VKFHSPDIMNRALKEMQG 244
Score = 43 (20.2 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY 253
++ S +G L+ +T+S L++ F + + +V D TG K Y
Sbjct: 293 NNTSFTIGGLSGRITESELEQHFIG-FGDLVYCRVSKDYQTGYIKFY 338
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 278 (102.9 bits), Expect = 4.1e-24, P = 4.1e-24
Identities = 70/219 (31%), Positives = 115/219 (52%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++++ G++ + E L F+ TG + + K+IR ++ YGFV ++ R A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS----- 230
+ +G + QP ++NWA +G +R + S +IFVGDL+P+VTD+ L ++FS
Sbjct: 119 TLNGRHI--FGQPMKVNWAYATG--QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
S Y + A+V+ D TGR++G+GFV F ++ + A+ EMNG + SSR +R + AT
Sbjct: 175 SSY--YRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGA 232
Query: 291 ASGXXXXXXXXALV--LAGGPGSNGARVQGSQSDGESNN 327
G V L G +G + S D NN
Sbjct: 233 TFGEDKHSSDGKSVVELTNGSSEDGREL--SNEDAPENN 269
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 271 (100.5 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 62/179 (34%), Positives = 99/179 (55%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
+DE +T+++G+L + E F+ F+ G V KVI + G ++ Y FVEF A
Sbjct: 42 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQAS 98
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDR-RTEACSDLSIFVGDLAPDVTDSILQETFS 230
+ LQ+ + L+ D+ ++NWA G + + + +FVGDL+ +V + L+E F
Sbjct: 99 QALQTMNKRLL--LDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQ 156
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ V AKVI D+NT ++KGYGFV + E RA+ +MNG + R +R + AT K
Sbjct: 157 P-FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 214
Score = 164 (62.8 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 46/170 (27%), Positives = 86/170 (50%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL +D L F G V + KVIR+ T +S+GYGFV + R AE+ ++
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRR-----TEACSD----------LSIFVGDLAPDVTD 222
+G + + R NWAT D+ E D S++VG++A +T+
Sbjct: 197 NGQWLGR--RTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTE 253
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
+++ F+S + + ++ + +GY FV+F +++ ++A+ +MN
Sbjct: 254 DEIRQGFAS-FGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQMN 296
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 273 (101.2 bits), Expect = 2.8e-23, P = 2.8e-23
Identities = 62/175 (35%), Positives = 101/175 (57%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+ +++G L + E L F TG V NVK+I +K + YGFVE+ AA++ +Q
Sbjct: 85 RALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDDPGAADRAMQ 143
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD-LSIFVGDLAPDVTDSILQETFSSKYP 234
+ +G + ++ R+NWA + + E S+ IFVGDL+ +V D +L + FS +
Sbjct: 144 TLNGRRVHQSE--IRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSV-FG 200
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
SV A+V+ D TGR++GYGFV F D ++ +A++ M+G + SR +R + A K
Sbjct: 201 SVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQK 255
Score = 138 (53.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 111 TNDETKT---IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
T ++T I++GDL + +++ L FS G V +V+ + +TG+S GYGFV F R
Sbjct: 168 TKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDR 227
Query: 168 AAAEKVLQSYSGSLMPNTDQPFRLNWATFSG 198
+ AEK L S G + + + R NWA G
Sbjct: 228 SDAEKALSSMDGEWLGS--RAIRCNWANQKG 256
Score = 72 (30.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 22/105 (20%), Positives = 43/105 (40%)
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
+VG+L P T + P + +++S +G+ F++ ++A+ +
Sbjct: 305 YVGNLTP-------YTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGL 357
Query: 272 NGVYCSSRPMRIDVATPKKAS---GXXXXXXXXALVLAGGPGSNG 313
NG + RP++ K ++ G + AGGPG G
Sbjct: 358 NGYNVNGRPLKCSWGKDKNSTNPQGNFDPSQAFSPQSAGGPGFPG 402
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 237 (88.5 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 60/166 (36%), Positives = 93/166 (56%)
Query: 141 QVVNVKVIR--NKQTGQSE--GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP-------- 188
Q++N+ I + T Q GY FVEF ++ A+ L S + + +PN P
Sbjct: 108 QMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNP 166
Query: 189 -----FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII 243
FRLNWA+ + + + S+FVGDL+P T++ L F +++ SVK +V+
Sbjct: 167 TFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMT 226
Query: 244 DSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
D TG ++ +GFVRFGDE+ER RA+ EM+G + R +R+ ATP+
Sbjct: 227 DPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272
Score = 65 (27.9 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ 152
+ + +T+W+GDL DE + +S + V VK+IR K+
Sbjct: 29 STEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKK 70
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 262 (97.3 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 66/196 (33%), Positives = 112/196 (57%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNK--QTGQ------ 155
G++N +++GDL D+ + ++ G+ +NV+++ N G
Sbjct: 43 GASNVSLGTTGNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP 102
Query: 156 --SEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPFRLNWAT--FSGSDR---RTEACS 207
++GY FV+F S A L +G L+PN ++ +LNWAT +S S+ ++ +
Sbjct: 103 KNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGN 161
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
+ SIFVGDLAP+VT+S L E F ++Y S AK++ D TG +KGYGFV+F + +E+ A
Sbjct: 162 NCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLA 221
Query: 268 MTEMNGVYCSSRPMRI 283
++EM GV+ + R +++
Sbjct: 222 LSEMQGVFLNGRAIKV 237
Score = 97 (39.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGFV 162
N S NN + +I++GDL + E+ L F + + K++ ++ TG S+GYGFV
Sbjct: 151 NNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFV 210
Query: 163 EFYSRAAAEKVLQSYSG 179
+F + + L G
Sbjct: 211 KFTNSDEQQLALSEMQG 227
Score = 63 (27.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 38/175 (21%), Positives = 64/175 (36%)
Query: 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPD 219
GFV++ R +AE + G P + RL+W G + A ++ L
Sbjct: 351 GFVQYVDRLSAEAAIAGMQG--FPIANSRVRLSW----GRSAKQTALLQQAMLSNSLQVQ 404
Query: 220 VTDSILQETFSSKYPSVK-GAKVIIDSNTGRTK--GYGFVRFGDENERSRAMTEMNGVYC 276
LQ+ PS A V+ D+N T G + + + + + N +
Sbjct: 405 QQQPGLQQPNYGYIPSSTCEAPVLPDNNVSSTMLPGCQILNYSNPYANANGLGSNNFSFY 464
Query: 277 SSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATVS 331
S+ AT +A+ L G G +QGS++ S NA ++
Sbjct: 465 SNNN-----ATNTQATSLLADTSSMDL---SGTGGQQVIMQGSEAVVNSTNAMLN 511
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 260 (96.6 bits), Expect = 7.3e-22, P = 7.3e-22
Identities = 66/208 (31%), Positives = 111/208 (53%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
+ KT+++G+L + E L FS G V + K+IR + G ++ Y F+E+ + AA
Sbjct: 5 QPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIR--EPG-NDPYAFIEYSNYQAATTA 61
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
L + + L ++ ++NWAT G+ +T+ S IFVGDL+P++ L+E F+ +
Sbjct: 62 LTAMNKRLF--LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAP-F 118
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
+ +++ D +T ++KGY FV F + E A+ MNG + SR +R + +T K
Sbjct: 119 GEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPP 178
Query: 294 XX-XXXXXXALVLAGGPGSNGARVQGSQ 320
+ GGPG NG+ V+GSQ
Sbjct: 179 REPSKGGGQGGGMGGGPG-NGSGVKGSQ 205
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 257 (95.5 bits), Expect = 8.9e-22, P = 8.9e-22
Identities = 60/203 (29%), Positives = 106/203 (52%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A S ++ + ++ IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKA--SAHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEF 164
S +N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F
Sbjct: 90 SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
S A++ +++ +G + N +P +++A
Sbjct: 150 ASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 257 (95.5 bits), Expect = 9.7e-22, P = 9.7e-22
Identities = 60/203 (29%), Positives = 106/203 (52%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A S ++ + ++ IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKA--SAHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEF 164
S +N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F
Sbjct: 90 SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
S A++ +++ +G + N +P +++A
Sbjct: 150 ASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 257 (95.5 bits), Expect = 9.7e-22, P = 9.7e-22
Identities = 60/203 (29%), Positives = 106/203 (52%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A S ++ + ++ IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKA--SAHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEF 164
S +N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F
Sbjct: 90 SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
S A++ +++ +G + N +P +++A
Sbjct: 150 ASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 257 (95.5 bits), Expect = 9.7e-22, P = 9.7e-22
Identities = 60/203 (29%), Positives = 106/203 (52%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A S ++ + ++ IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKA--SAHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEF 164
S +N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F
Sbjct: 90 SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
S A++ +++ +G + N +P +++A
Sbjct: 150 ASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 257 (95.5 bits), Expect = 9.7e-22, P = 9.7e-22
Identities = 60/203 (29%), Positives = 106/203 (52%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A S ++ + ++ IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKA--SAHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEF 164
S +N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F
Sbjct: 90 SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
S A++ +++ +G + N +P +++A
Sbjct: 150 ASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 257 (95.5 bits), Expect = 9.7e-22, P = 9.7e-22
Identities = 60/203 (29%), Positives = 106/203 (52%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A S ++ + ++ IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKA--SAHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEF 164
S +N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F
Sbjct: 90 SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
S A++ +++ +G + N +P +++A
Sbjct: 150 ASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 257 (95.5 bits), Expect = 9.7e-22, P = 9.7e-22
Identities = 60/203 (29%), Positives = 106/203 (52%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A S ++ + ++ IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKA--SAHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEF 164
S +N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F
Sbjct: 90 SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
S A++ +++ +G + N +P +++A
Sbjct: 150 ASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 252 (93.8 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 59/203 (29%), Positives = 105/203 (51%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ +++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A S ++ + ++ IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKA--SAHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEF 164
S +N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F
Sbjct: 90 SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
S A++ +++ +G + N +P +++A
Sbjct: 150 ASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 249 (92.7 bits), Expect = 5.6e-21, P = 5.6e-21
Identities = 61/188 (32%), Positives = 100/188 (53%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
+ +E T+++G L +D+ +L F H G V+ +VI + TG+S GYG+V+F S++AA
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 171 EKVLQSYSGSLM---P-NTDQPFRLNWATFSGSDRRTEACSDLS-----IFVGDLAPDVT 221
EK L+ G + P N D A+ S +DR + S +F+G+L+ +
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNAN 282
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
L F +Y +V +V +T + KG+G+V+F +E A+ MNG Y RP
Sbjct: 283 RDNLFNVFG-EYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPC 341
Query: 282 RIDVATPK 289
R+D +TP+
Sbjct: 342 RLDFSTPR 349
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 249 (92.7 bits), Expect = 5.6e-21, P = 5.6e-21
Identities = 61/188 (32%), Positives = 100/188 (53%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
+ +E T+++G L +D+ +L F H G V+ +VI + TG+S GYG+V+F S++AA
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 171 EKVLQSYSGSLM---P-NTDQPFRLNWATFSGSDRRTEACSDLS-----IFVGDLAPDVT 221
EK L+ G + P N D A+ S +DR + S +F+G+L+ +
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNAN 282
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
L F +Y +V +V +T + KG+G+V+F +E A+ MNG Y RP
Sbjct: 283 RDNLFNVFG-EYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPC 341
Query: 282 RIDVATPK 289
R+D +TP+
Sbjct: 342 RLDFSTPR 349
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 236 (88.1 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 59/165 (35%), Positives = 91/165 (55%)
Query: 144 NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP--------------- 188
N+K N Q + GY FVEF S A+ L S +G L+P+ P
Sbjct: 175 NMKPDINFQGLTNSGYCFVEFESFEDAQHAL-SLNGQLLPDIAMPSQSNFPNNPDNQKKY 233
Query: 189 FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNT 247
FRLNWA+ + + S+FVGDL+ T++ L F +P S+K +V+ D +
Sbjct: 234 FRLNWASGATLSAPIVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPIS 293
Query: 248 GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
G+++ +GFVRF +E+ER RA+ EMNG + + RP+R+ +ATP+ +
Sbjct: 294 GKSRCFGFVRFTEESERQRALIEMNGAWFAGRPLRVALATPRNVA 338
Score = 104 (41.7 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNK--------QTGQSEGYGFV 162
+++ +T+W+GDL W+DE + + + S + V VK+I+ K Q + GY FV
Sbjct: 134 DNKPRTLWMGDLDPWLDENAIQDLWWSILQKKVVVKIIKPKNMKPDINFQGLTNSGYCFV 193
Query: 163 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193
EF S A+ L S +G L+P+ P + N+
Sbjct: 194 EFESFEDAQHAL-SLNGQLLPDIAMPSQSNF 223
Score = 66 (28.3 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
++ ++FVG L+ DV++ L F + ++ K+ G K GFV++ + E
Sbjct: 519 NNTTVFVGGLSSDVSEPTLHTLFKP-FGLIQQVKI----PPG--KNCGFVKYSNREEAEE 571
Query: 267 AMTEMNGVYCSSRPMRI 283
A+ M G +R+
Sbjct: 572 AIAAMQGFVIGGNRVRL 588
Score = 39 (18.8 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 307 GGPGSNGARVQG-SQSDGESNN 327
GG G NG QG + S SNN
Sbjct: 738 GGSGHNGDSNQGITSSSFLSNN 759
Score = 38 (18.4 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 318 GSQSDGESNNATVSPSF 334
GS +G+SN S SF
Sbjct: 739 GSGHNGDSNQGITSSSF 755
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 238 (88.8 bits), Expect = 6.5e-20, P = 6.5e-20
Identities = 56/178 (31%), Positives = 97/178 (54%)
Query: 113 DET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
DE KT+++G+L + E + FS G N K+I + T ++ Y FVEFY A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
L + +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+
Sbjct: 61 SALAAMNGRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAP 117
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 118 -FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 159 (61.0 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 42/173 (24%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRTE--------ACSDLSIFVGDLAPDV 220
G + + R NWAT + + ++ + S+ +++ G + +
Sbjct: 157 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGL 214
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 215 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 260
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 53/180 (29%), Positives = 101/180 (56%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
D+ +T+++G+L + E + FS G + K+I + TG ++ Y FVEFY A
Sbjct: 6 DQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDT-TG-NDPYCFVEFYENRHAAA 63
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
L + +G + D ++NWA+ S ++ + + +FVGDL+P+++ ++ F+
Sbjct: 64 ALAAMNGRKILGKDM--KVNWASTPSSQKK-DTSNHFHVFVGDLSPEISTDDVRAAFAP- 119
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
+ + A+V+ D TG++KGYGF+ F ++ + A+ +MNG + R +R + AT K ++
Sbjct: 120 FGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSA 179
Score = 151 (58.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 42/174 (24%), Positives = 85/174 (48%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGF+ F ++ AE +Q
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE------------------ACSDLSIFVGDLAPD 219
+G + + R NWAT S ++ + S+ +++ G +A
Sbjct: 159 NGQWLGG--RQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASG 216
Query: 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
++D ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 217 LSDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFDSHEGAAHAIVSVNG 263
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 55/178 (30%), Positives = 97/178 (54%)
Query: 113 DET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
DE KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
L + +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAP 117
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 118 -FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 135 (52.6 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 38/157 (24%), Positives = 78/157 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRTE--------ACSDLSIFVGDLAPDV 220
G + + R NWAT + + ++ + S+ +++ G + +
Sbjct: 157 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 214
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257
T+ ++++TFS + + +V D KGY FVR
Sbjct: 215 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVR 244
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 53/174 (30%), Positives = 95/174 (54%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+ +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+ +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAP-FGR 116
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 117 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 170
Score = 134 (52.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 39/157 (24%), Positives = 77/157 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRT---EACSDLS-----IFVGDLAPDV 220
G + + R NWAT + + ++ E S S ++ G + +
Sbjct: 153 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGL 210
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257
T+ ++++TFS + + +V D KGY F+R
Sbjct: 211 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFIR 240
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 238 (88.8 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 58/179 (32%), Positives = 96/179 (53%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
K +++G+L E + FS G V I N + Y F+E+ + A+ L
Sbjct: 79 KILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALN 138
Query: 176 SYSGSLMPNTDQPFRLNWA----TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
+ +G L+ + + ++NWA +G+ TE +IFVGDL+P+V D L+ FS
Sbjct: 139 TLNGRLVDDVE--IKVNWAFQSAAIAGNPNNTEEPL-FNIFVGDLSPEVNDEGLRNAFS- 194
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
K+ S+K A V+ D T R++GYGFV FG++++ A+ MNG + R +R + A+ K+
Sbjct: 195 KFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQ 253
Score = 125 (49.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G+ NN T + I++GDL +++ L N FS + V+ + QT +S GYGFV F
Sbjct: 163 GNPNN-TEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTF 221
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195
+++ AE LQ+ +G + + R NWA+
Sbjct: 222 GNQSDAELALQTMNGEWL--CGRAIRCNWAS 250
Score = 50 (22.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR-AMTEMNGVYCSSRPMR 282
P ++ I+D +G FV++ D +ER+ A+ ++ G + RP++
Sbjct: 430 PLLQNFGFIVDFKFHPERGCAFVKY-DTHERAALAIIQLAGFNLNGRPLK 478
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 232 (86.7 bits), Expect = 3.5e-19, P = 3.5e-19
Identities = 55/178 (30%), Positives = 97/178 (54%)
Query: 113 DET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
DE KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
L + +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAP 117
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 118 -FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 158 (60.7 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 43/173 (24%), Positives = 84/173 (48%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRT---EACSDLS-----IFVGDLAPDV 220
G + + R NWAT + + ++ E S S ++ G + +
Sbjct: 157 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGL 214
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V D KGY F+RF + A+ +NG
Sbjct: 215 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSVNG 260
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 233 (87.1 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 63/239 (26%), Positives = 116/239 (48%)
Query: 106 SNNNFTNDETK---TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFV 162
SN N+ET+ TI++G L +D+ +L F H G V+ +VI + T +S GYG+V
Sbjct: 155 SNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYV 214
Query: 163 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF--SGSDRRTEACSDL------SIFVG 214
+F +++ AEK +Q G + +P + +T +G++ R + D ++F+G
Sbjct: 215 DFENKSYAEKAIQEMQGKEIDG--RPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLG 272
Query: 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
+L+ + + E F+ K+ V ++ T + KG+G+V+F + + +A+ + G
Sbjct: 273 NLSFNADRDAIFELFA-KHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGE 331
Query: 275 YCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATVSPS 333
Y +RP+R+D ++P+ + GG G N R G + PS
Sbjct: 332 YIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRGGN--RGFGGRGGARGGRGGFRPS 388
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 233 (87.1 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 59/183 (32%), Positives = 97/183 (53%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
+++ +T+++ +L + + FL F+ G V+ K+I G ++ Y FVEF A
Sbjct: 36 SEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQAT 92
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFS----GSDR-RTEACSDLSIFVGDLAPDVTDSILQ 226
LQS++G + ++ + WA F G +R + E +FVGDL ++ + L+
Sbjct: 93 LALQSHNGREL--LEKEMHVTWA-FEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLR 149
Query: 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
E F K+ V AK+I D+NT + KGYGFV + + RA+ EMNG + R +R + A
Sbjct: 150 EAFV-KFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208
Query: 287 TPK 289
T K
Sbjct: 209 TRK 211
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 234 (87.4 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 68/238 (28%), Positives = 117/238 (49%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ET T+++G L +D+ +L F G +V +VI + Q+G+S+GYG+V+F + AA+
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 172 KVL-----QSYSGSLM--------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
+ + G ++ P QP+ A G D+ +E SD ++FVG+L+
Sbjct: 319 AAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFG-DQLSEP-SD-TVFVGNLSF 375
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+ T+ L F ++ ++ D +GR KG+G+V F D + + + EMNG + +
Sbjct: 376 NATEDDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAG 433
Query: 279 RPMRIDVATPKKASGXXXXXXXXA----LVLAGGPGSNGARVQGSQSDGESNNATVSP 332
RP R+D +TP+ G GG G R +G G N +V+P
Sbjct: 434 RPCRLDFSTPRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVAP 491
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 232 (86.7 bits), Expect = 8.5e-19, P = 8.5e-19
Identities = 40/90 (44%), Positives = 67/90 (74%)
Query: 201 RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260
++ ++ SDLS+++GDLA DVTD L F +YPSV+ A+VI+DS TG ++GYGFV+F
Sbjct: 105 QQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFAS 164
Query: 261 ENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
+ E+ +A+ +MNG Y +++P++++ T K+
Sbjct: 165 DVEKDKALIDMNGFYINNKPIKVNNPTHKR 194
Score = 121 (47.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 50/193 (25%), Positives = 87/193 (45%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
+D +++IGDL + + L N F V + +VI + TG S GYGFV+F S
Sbjct: 109 SDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVEK 168
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLS--------IFVGDLAPDVTD 222
+K L +G + N +P ++N T + +T DL+ I+V L + +
Sbjct: 169 DKALIDMNGFYINN--KPIKVNNPTHKRLNSQTSTIPDLTSTDPNNTAIYVSQLDHYIDE 226
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
+LQ F + Y + K++ + K FV F + E + A +N + ++
Sbjct: 227 GVLQTIFGA-YGEISYIKMLTN------KFSAFVNFVNR-ESAEAAFGLNNFPVGNTRLK 278
Query: 283 I----DVATPKKA 291
+ +VA P K+
Sbjct: 279 VQWGKNVAPPPKS 291
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 226 (84.6 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 57/185 (30%), Positives = 96/185 (51%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
++ D+ T++IG+L + ++ + G++VNV + +++ T +GYGFVEF S
Sbjct: 6 HWEQDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEE 65
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQET 228
AE + +G + +P R+N A+ +D++ +FVG+L P VT+ +L +T
Sbjct: 66 DAEYASRIMNGIRLYG--KPIRVNKAS---ADKQKSVEIGAELFVGNLDPMVTEQVLYDT 120
Query: 229 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
FS V KV D ++ +KGYGFV F D A+ MNG Y ++ + + A
Sbjct: 121 FSRFGNLVNLPKVARD-DSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYK 179
Query: 289 KKASG 293
K G
Sbjct: 180 KDGKG 184
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 227 (85.0 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 52/178 (29%), Positives = 98/178 (55%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
+++ KT+++G+L + E + F G + K+I + T ++ Y FVEF+ A
Sbjct: 4 DEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAA 61
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
L + +G + + ++NWAT S S ++ + + +FVGDL+P++T ++ F+
Sbjct: 62 ASLAAMNGRKIMGKE--VKVNWAT-SPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAP 118
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R + AT K
Sbjct: 119 -FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 175
Score = 158 (60.7 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 42/173 (24%), Positives = 84/173 (48%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRTE--------ACSDLSIFVGDLAPDV 220
G + + R NWAT + + + + S+ +++ G + +
Sbjct: 158 GGQWLGG--RQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGL 215
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 216 TEQLMRQTFSP-FGQIMEVRVFPD------KGYSFVRFNSHESAAHAIVSVNG 261
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 226 (84.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 52/176 (29%), Positives = 95/176 (53%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
+ +T+++G+L + E + FS G + K+I + T ++ Y FVEFY A
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTS-NDPYCFVEFYEHRDAAAA 64
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
L + +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+ +
Sbjct: 65 LAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFAP-F 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ A+V+ D TG++KGYGFV F ++ + A+ M G + R +R + AT K
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
Score = 162 (62.1 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 159 GGQWLGG--RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 217 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 262
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 226 (84.6 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 52/176 (29%), Positives = 95/176 (53%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
+ +T+++G+L + E + FS G + K+I + T ++ Y FVEFY A
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTS-NDPYCFVEFYEHRDAAAA 64
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
L + +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+ +
Sbjct: 65 LAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFAP-F 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ A+V+ D TG++KGYGFV F ++ + A+ M G + R +R + AT K
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
Score = 162 (62.1 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 159 GGQWLGG--RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 217 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 262
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 225 (84.3 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 58/204 (28%), Positives = 104/204 (50%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVNV V +++ T + YGF+E+ S A+
Sbjct: 22 NQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADY 81
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ D+++ ++F+G+L PDV + +L +TFS+
Sbjct: 82 AIKVLN--MIKLHGKPIRVNKAS---QDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE-MNGVYCSSRPMRIDVATPKKA 291
K++ D +TG ++G+GF+ + D E S A E M G Y S+R + + A K
Sbjct: 136 GVIASNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIESMTGQYLSNRQITVSYAYKKDT 194
Query: 292 SGXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P + +R
Sbjct: 195 KGERHGTPAERLLAATNPTAQKSR 218
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 222 (83.2 bits), Expect = 5.5e-18, P = 5.5e-18
Identities = 58/188 (30%), Positives = 98/188 (52%)
Query: 113 DET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
DE KT+++G+L + E + FS G N K+I + T ++ Y FVEFY A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRR---------TEACSD-LSIFVGDLAPDVT 221
L + +G + + ++NWAT S ++ T+ D +FVGDL+P++T
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +
Sbjct: 119 TEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 282 RIDVATPK 289
R + AT K
Sbjct: 178 RTNWATRK 185
Score = 159 (61.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 42/173 (24%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRTE--------ACSDLSIFVGDLAPDV 220
G + + R NWAT + + ++ + S+ +++ G + +
Sbjct: 168 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 222 (83.2 bits), Expect = 6.1e-18, P = 6.1e-18
Identities = 58/188 (30%), Positives = 98/188 (52%)
Query: 113 DET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
DE KT+++G+L + E + FS G N K+I + T ++ Y FVEFY A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRR---------TEACSD-LSIFVGDLAPDVT 221
L + +G + + ++NWAT S ++ T+ D +FVGDL+P++T
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +
Sbjct: 119 TEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 282 RIDVATPK 289
R + AT K
Sbjct: 178 RTNWATRK 185
Score = 159 (61.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 42/173 (24%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRTE--------ACSDLSIFVGDLAPDV 220
G + + R NWAT + + ++ + S+ +++ G + +
Sbjct: 168 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 57/188 (30%), Positives = 98/188 (52%)
Query: 113 DET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
DE KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRR---------TEACSD-LSIFVGDLAPDVT 221
L + +G + + ++NWAT S ++ T+ D +FVGDL+P++T
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +
Sbjct: 119 TEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 282 RIDVATPK 289
R + AT K
Sbjct: 178 RTNWATRK 185
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 221 (82.9 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 54/179 (30%), Positives = 94/179 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T+D + +++G+L + E L F G + N+K++ +K ++ Y FVE++ A
Sbjct: 72 TSD--RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDA 128
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
LQ+ +G + N ++NWA S +++ + ++FVGDL +V D L+ F
Sbjct: 129 NIALQTLNGKQIENNI--VKINWAFQS---QQSSSDDTFNLFVGDLNVNVDDETLRNAFK 183
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+PS V+ D TG ++GYGFV F +++ AM M G + RP+RI+ A +
Sbjct: 184 D-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 50/167 (29%), Positives = 89/167 (53%)
Query: 149 RNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD 208
+++ TGQ +GYGFVEF S A+ ++ + ++ +P R+N A S ++ + ++
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMN--MIKLYGKPIRVNKA--SAHNKNLDVGAN 58
Query: 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
IF+G+L P++ + +L +TFS+ ++ K++ D +TG +KGY F+ F + A+
Sbjct: 59 --IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 116
Query: 269 TEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGAR 315
MNG Y +RP+ + A K + G L+ A P S R
Sbjct: 117 EAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADR 163
Score = 118 (46.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEF 164
S +N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F
Sbjct: 47 SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 106
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
S A++ +++ +G + N +P +++A
Sbjct: 107 ASFDASDAAIEAMNGQYLCN--RPITVSYA 134
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 217 (81.4 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 57/188 (30%), Positives = 98/188 (52%)
Query: 113 DET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
DE KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRR---------TEACSD-LSIFVGDLAPDVT 221
L + +G + + ++NWAT S ++ T+ D +FVGDL+P++T
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +
Sbjct: 119 TEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 282 RIDVATPK 289
R + AT K
Sbjct: 178 RTNWATRK 185
Score = 159 (61.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 42/173 (24%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRTE--------ACSDLSIFVGDLAPDV 220
G + + R NWAT + + ++ + S+ +++ G + +
Sbjct: 168 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 217 (81.4 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 57/188 (30%), Positives = 98/188 (52%)
Query: 113 DET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
DE KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRR---------TEACSD-LSIFVGDLAPDVT 221
L + +G + + ++NWAT S ++ T+ D +FVGDL+P++T
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +
Sbjct: 119 TEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 282 RIDVATPK 289
R + AT K
Sbjct: 178 RTNWATRK 185
Score = 159 (61.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 42/173 (24%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRTE--------ACSDLSIFVGDLAPDV 220
G + + R NWAT + + ++ + S+ +++ G + +
Sbjct: 168 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 217 (81.4 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 57/188 (30%), Positives = 98/188 (52%)
Query: 113 DET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
DE KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRR---------TEACSD-LSIFVGDLAPDVT 221
L + +G + + ++NWAT S ++ T+ D +FVGDL+P++T
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +
Sbjct: 119 TEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 282 RIDVATPK 289
R + AT K
Sbjct: 178 RTNWATRK 185
Score = 159 (61.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 44/173 (25%), Positives = 84/173 (48%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRT---EACSDLS-----IFVGDLAPDV 220
G + + R NWAT + + ++ E S S ++ G + +
Sbjct: 168 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNG 271
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 216 (81.1 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 55/184 (29%), Positives = 96/184 (52%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRR---------TEACSD-LSIFVGDLAPDVTDSIL 225
+ +G + + ++NWAT S ++ T+ D +FVGDL+P++T +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 118
Query: 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
+ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R +
Sbjct: 119 KAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 177
Query: 286 ATPK 289
AT K
Sbjct: 178 ATRK 181
Score = 158 (60.7 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 43/173 (24%), Positives = 84/173 (48%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 178 SGSLMPNTDQPFRLNWAT---------FSGSDRRT---EACSDLS-----IFVGDLAPDV 220
G + + R NWAT + + ++ E S S ++ G + +
Sbjct: 164 GGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGL 221
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V D KGY F+RF + A+ +NG
Sbjct: 222 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSVNG 267
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 196 (74.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 53/193 (27%), Positives = 93/193 (48%)
Query: 143 VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR 202
VNV + +++ T +GYGFVEF S A+ ++ + ++ +P R+N A S +
Sbjct: 59 VNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMN--MIKLYGKPIRVNKA--SAHQKN 114
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
+ ++ IF+G+L +V + +L +TFS+ ++ K++ D TG++K + F+ F
Sbjct: 115 LDVGAN--IFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFE 172
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSD 322
AM MNG Y +RP+ + A K G L+ A P ++ R +D
Sbjct: 173 ASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSTHADRPHQLFAD 232
Query: 323 GESNNATVSPSFP 335
T+ P P
Sbjct: 233 APVQ--TMMPQMP 243
Score = 38 (18.4 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQV 142
++ TI+ G L + ET L F G V
Sbjct: 10 NQDATIYAGGLDDKVSETLLWELFVQAGPV 39
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 208 (78.3 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 53/175 (30%), Positives = 94/175 (53%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G+N + T ++++GDL + E L+ F+ G V +++V R+ T +S GY +V +
Sbjct: 5 GTNMMHPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNY 64
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
++ A AE+ L + + + + QP RL W+ S R++ + IFV +L + +
Sbjct: 65 HNLADAERALDTLNYTNIKG--QPARLMWSHRDPSLRKSGTGN---IFVKNLDKSIDNKA 119
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
L +TFS + ++ KV D G++K YGFV + DE A+ ++NGV S+
Sbjct: 120 LFDTFSM-FGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSK 172
Score = 124 (48.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 45/221 (20%), Positives = 94/221 (42%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T I++ +L +D L + FS G +++ KV + + G+S+ YGFV + +A++ +
Sbjct: 103 TGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAI 161
Query: 175 QSYSGSLMPNTDQ---PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
+ +G + + + PF S+R T +++V + VT++ L++ F+
Sbjct: 162 EKVNGVQLGSKNVYVGPF------IKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNP 215
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
Y + V +D+ + + + F+ + D AM +NG + + PKK
Sbjct: 216 -YGEITSMIVKMDN---KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKE 271
Query: 292 SGXXXXXXXXALVLAGGPGSNGARVQGSQSD----GESNNA 328
+ +++D G+S+NA
Sbjct: 272 EATASTSGAANQTTGTDADKTDKNDKNNKADKNEKGDSSNA 312
Score = 40 (19.1 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 309 PGSNGARVQGSQSDGESNNATVSPS 333
PG + S G +NN +SP+
Sbjct: 330 PGETTTTTANADSTGANNNNGLSPN 354
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 208 (78.3 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 53/175 (30%), Positives = 94/175 (53%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G+N + T ++++GDL + E L+ F+ G V +++V R+ T +S GY +V +
Sbjct: 5 GTNMMHPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNY 64
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
++ A AE+ L + + + + QP RL W+ S R++ + IFV +L + +
Sbjct: 65 HNLADAERALDTLNYTNIKG--QPARLMWSHRDPSLRKSGTGN---IFVKNLDKSIDNKA 119
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
L +TFS + ++ KV D G++K YGFV + DE A+ ++NGV S+
Sbjct: 120 LFDTFSM-FGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSK 172
Score = 124 (48.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 45/221 (20%), Positives = 94/221 (42%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T I++ +L +D L + FS G +++ KV + + G+S+ YGFV + +A++ +
Sbjct: 103 TGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAI 161
Query: 175 QSYSGSLMPNTDQ---PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
+ +G + + + PF S+R T +++V + VT++ L++ F+
Sbjct: 162 EKVNGVQLGSKNVYVGPF------IKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNP 215
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
Y + V +D+ + + + F+ + D AM +NG + + PKK
Sbjct: 216 -YGEITSMIVKMDN---KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKE 271
Query: 292 SGXXXXXXXXALVLAGGPGSNGARVQGSQSD----GESNNA 328
+ +++D G+S+NA
Sbjct: 272 EATASTSGAANQTTGTDADKTDKNDKNNKADKNEKGDSSNA 312
Score = 40 (19.1 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 309 PGSNGARVQGSQSDGESNNATVSPS 333
PG + S G +NN +SP+
Sbjct: 330 PGETTTTTANADSTGANNNNGLSPN 354
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 58/177 (32%), Positives = 96/177 (54%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
+E K +++G+L + +D L F G V +VI N+ T QS G+GFV + AEK
Sbjct: 111 EEAK-LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS-DRRTEACSDLS--IFVGDLAPDVTDSILQETF 229
++ ++ S N + +N A GS R D + I+VG+L DV L+ F
Sbjct: 170 AVEKFN-SFEVN-GRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF 227
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
S ++ V A+V+ D TGR++G+GFV+ +ENE + A+ ++G R ++++VA
Sbjct: 228 S-EHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 206 (77.6 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 55/188 (29%), Positives = 99/188 (52%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E +++G+L + + + L F G VV+V+++ +K T +S G+GFV S A++
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDR--RTE--------ACSDLSIFVGDLAPDVTDS 223
+Q ++ S + G + RT+ S ++ G+L ++T
Sbjct: 174 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQ 233
Query: 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD-ENERSRAMTEMNGVYCSSRPMR 282
L++ F + P V GAKVI + NTGR++G+GF+ F EN +S A+ MNGV R +R
Sbjct: 234 GLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQS-ALATMNGVEVEGRALR 291
Query: 283 IDVATPKK 290
+++A+ ++
Sbjct: 292 LNLASERE 299
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 204 (76.9 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 52/181 (28%), Positives = 88/181 (48%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ TI++G+L + ++ L G VVN+ + R++ G+GF EF E
Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
Q + + +P R+N A+ DR ++FVG+L P V + +L +TFS+
Sbjct: 68 ACQILNQVKL--FGKPIRVNRAS---QDRGVNTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
VK +V D N GR+KGYGFV + A+ MN + ++P+ + A ++
Sbjct: 123 GQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGK 181
Query: 293 G 293
G
Sbjct: 182 G 182
>GENEDB_PFALCIPARUM|PFF1425w [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 212 (79.7 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 56/184 (30%), Positives = 90/184 (48%)
Query: 107 NNNFTND-ETKTIWIGDLF----HWMDETFLHNC--FSHTGQVVNVKVIRNKQTGQSEGY 159
N N N TKT+W+GDL +DE ++ C + ++ +K+ + K + Q Y
Sbjct: 13 NKNMNNSYNTKTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSY 71
Query: 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL---------- 209
F+EF + A+ + +G +P F+LNWA ++ SD T DL
Sbjct: 72 AFIEFSTYEVAKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTY 131
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
SI+VG L + T ++ F + Y S+ K+I ++ K Y F+ F + +E RA+T
Sbjct: 132 SIYVGSLPINTTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALT 191
Query: 270 EMNG 273
EMNG
Sbjct: 192 EMNG 195
>UNIPROTKB|C6KTC9 [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 212 (79.7 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 56/184 (30%), Positives = 90/184 (48%)
Query: 107 NNNFTND-ETKTIWIGDLF----HWMDETFLHNC--FSHTGQVVNVKVIRNKQTGQSEGY 159
N N N TKT+W+GDL +DE ++ C + ++ +K+ + K + Q Y
Sbjct: 13 NKNMNNSYNTKTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSY 71
Query: 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL---------- 209
F+EF + A+ + +G +P F+LNWA ++ SD T DL
Sbjct: 72 AFIEFSTYEVAKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTY 131
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
SI+VG L + T ++ F + Y S+ K+I ++ K Y F+ F + +E RA+T
Sbjct: 132 SIYVGSLPINTTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALT 191
Query: 270 EMNG 273
EMNG
Sbjct: 192 EMNG 195
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 205 (77.2 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR--------NKQTGQS-------EG 158
+ +T+++G+L + E + FS G + K+I N G S +
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSP 123
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 279 RPMRIDVATPK 289
R +R + AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 161 (61.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 176 GGQWLGG--RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 234 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 205 (77.2 bits), Expect = 3.9e-16, P = 3.9e-16
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR--------NKQTGQS-------EG 158
+ +T+++G+L + E + FS G + K+I N G S +
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSP 123
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 279 RPMRIDVATPK 289
R +R + AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 161 (61.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 176 GGQWLGG--RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 234 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 210 (79.0 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 51/163 (31%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R++ T +S GY V F AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IFV +L + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFVKNLDRSIDSKTLYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + E RA+ +MNG++ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEEAERAIEKMNGMFLNDR 166
Score = 182 (69.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 52/176 (29%), Positives = 96/176 (54%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I++ +L +D L++ FS G +++ KV+ + + G S+GYGFV F ++ AE+ ++
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G + N + F + S DR+ E A ++++ +L D+ D LQ+ FS
Sbjct: 159 NGMFL-NDRKVFVGRFK--SRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFG 215
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
P++ KV+ D + G++KG+GFV F + +A+ EMNG + + + + A K
Sbjct: 216 PALS-VKVMTDES-GKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
Score = 137 (53.3 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 29/89 (32%), Positives = 55/89 (61%)
Query: 202 RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261
R+ C ++++V +L + D L++ FS + ++ AKV ++ GR+KG+GFV F
Sbjct: 297 RSVRCQGVNLYVKNLDDGIDDERLRKEFSP-FGTITSAKVTMEG--GRSKGFGFVCFSSP 353
Query: 262 NERSRAMTEMNGVYCSSRPMRIDVATPKK 290
E ++A+TEMNG +++P+ + +A K+
Sbjct: 354 EEATKAVTEMNGRIVATKPLYVALAQRKE 382
Score = 125 (49.1 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
Score = 96 (38.9 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I +L MD+ L + FS G ++VKV+ + ++G+S+G+GFV F A K
Sbjct: 189 EFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKA 247
Query: 174 LQSYSG 179
+ +G
Sbjct: 248 VDEMNG 253
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 205 (77.2 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR--------NKQTGQS-------EG 158
+ +T+++G+L + E + FS G + K+I N G S +
Sbjct: 6 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 65
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSP 122
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 123 EITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 181
Query: 279 RPMRIDVATPK 289
R +R + AT K
Sbjct: 182 RQIRTNWATRK 192
Score = 162 (62.1 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 175 GGQWLGG--RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 232
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 233 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 278
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 205 (77.2 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR--------NKQTGQS-------EG 158
+ +T+++G+L + E + FS G + K+I N G S +
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSP 123
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 279 RPMRIDVATPK 289
R +R + AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 162 (62.1 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 176 GGQWLGG--RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 234 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 205 (77.2 bits), Expect = 4.8e-16, P = 4.8e-16
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR--------NKQTGQS-------EG 158
+ +T+++G+L + E + FS G + K+I N G S +
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSP 123
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 279 RPMRIDVATPK 289
R +R + AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 162 (62.1 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 176 GGQWLGG--RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 234 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 205 (77.2 bits), Expect = 4.8e-16, P = 4.8e-16
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR--------NKQTGQS-------EG 158
+ +T+++G+L + E + FS G + K+I N G S +
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSP 123
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 279 RPMRIDVATPK 289
R +R + AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 162 (62.1 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 176 GGQWLGG--RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 234 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 205 (77.2 bits), Expect = 4.8e-16, P = 4.8e-16
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR--------NKQTGQS-------EG 158
+ +T+++G+L + E + FS G + K+I N G S +
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSP 123
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 279 RPMRIDVATPK 289
R +R + AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 161 (61.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 176 GGQWLGG--RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 234 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 205 (77.2 bits), Expect = 4.8e-16, P = 4.8e-16
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR--------NKQTGQS-------EG 158
+ +T+++G+L + E + FS G + K+I N G S +
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSP 123
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 279 RPMRIDVATPK 289
R +R + AT K
Sbjct: 183 RQIRTNWATRK 193
Score = 161 (61.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 45/173 (26%), Positives = 85/173 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC--SDL---------SIFVGDLAPDV 220
G + + R NWAT S + T+ D+ +++ G +A +
Sbjct: 176 GGQWLGG--RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 234 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 205 (77.2 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 42/76 (55%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS +YPS AKV+ D TG+TKGYGFV F D N+ RA
Sbjct: 302 DFRIFCGDLGNEVNDDILARAFS-RYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRA 360
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 361 MREMNGRYVGSRPIKL 376
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 209 (78.6 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 50/167 (29%), Positives = 96/167 (57%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + ++ L + F G VV V+V R+ T +S GYG+V F + A + +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +P +P R+ ++ S RR+ A + IF+ +L + L +TFSS + ++
Sbjct: 97 LN--YIPLYGKPIRVMYSHRDPSVRRSGAGN---IFIKNLDESIDHKALHDTFSS-FGNI 150
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
KV +DS+ G++KGYGFV++ +E +A+ ++NG+ + + + +
Sbjct: 151 VSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 174 (66.3 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 54/196 (27%), Positives = 103/196 (52%)
Query: 111 TNDETK--TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
T ++TK +++ +L + L N F G++ + V+++ + G+S+G+GFV F +
Sbjct: 208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENAD 266
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEA----------CSDL----SIFVG 214
A + ++S +G D+ + + A S+R TE +D +++V
Sbjct: 267 DAARAVESLNGHKFD--DKEWYVGRAQ-KKSERETELRVRYEQNLKEAADKFQSSNLYVK 323
Query: 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
+L P ++D L+E FS + +V +KV+ D N G +KG GFV F E + AM++++G
Sbjct: 324 NLDPSISDEKLKEIFSP-FGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGK 381
Query: 275 YCSSRPMRIDVATPKK 290
S+P+ + +A K+
Sbjct: 382 MIESKPLYVAIAQRKE 397
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 204 (76.9 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 49/197 (24%), Positives = 100/197 (50%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ TI++G L + E+ L G VV+V + +++ T +G+GFVEF A+
Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P ++N A S ++ + ++ IFVG+L P+V + +L +TFS+
Sbjct: 70 AIKILN--MIKLYGKPIKVNKA--SAHEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D ++G +KG+ F+ F A+ MNG + +R + + A + +
Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
Query: 293 GXXXXXXXXALVLAGGP 309
G ++ A P
Sbjct: 184 GERHGTAAERMLAAQNP 200
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 204 (76.9 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 49/197 (24%), Positives = 100/197 (50%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ TI++G L + E+ L G VV+V + +++ T +G+GFVEF A+
Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P ++N A S ++ + ++ IFVG+L P+V + +L +TFS+
Sbjct: 70 AIKILN--MIKLYGKPIKVNKA--SAHEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D ++G +KG+ F+ F A+ MNG + +R + + A + +
Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
Query: 293 GXXXXXXXXALVLAGGP 309
G ++ A P
Sbjct: 184 GERHGTAAERMLAAQNP 200
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 208 (78.3 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 161 (61.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 53/190 (27%), Positives = 96/190 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + M++ L F G ++VKV+ + G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKA 247
Query: 174 LQSYSGSLMPNTDQPF------RLNWAT-----FSG--SDRRTEACSDLSIFVGDLAPDV 220
+ +G M N F ++ T F DR T ++++V +L +
Sbjct: 248 VDEMNGKDM-NGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGI 305
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
D L++ F + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P
Sbjct: 306 DDERLRKEFLP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 281 MRIDVATPKK 290
+ + +A K+
Sbjct: 363 LYVALAQRKE 372
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN RP+RI
Sbjct: 71 TMNFDVIKGRPVRI 84
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 208 (78.3 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 178 (67.7 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 49/188 (26%), Positives = 93/188 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + FS G ++++V+ + + G+S G+GFV F A++
Sbjct: 189 EFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV++D GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 117 (46.2 bits), Expect = 0.00042, P = 0.00042
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS ++ +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPA-GAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN RP+RI
Sbjct: 71 TMNFDVIKGRPVRI 84
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 198 (74.8 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 48/170 (28%), Positives = 95/170 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ--VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
++++GDL ++E L+ FS G+ + ++ V R+ T +S GY +V F++ AE+ L
Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 244
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ + +L+ +P R+ W+ + R+T + IFV +L V +++L +TFSS +
Sbjct: 245 DTLNYTLVHG--KPCRIMWSYRDPTKRKTNVGN---IFVKNLEKGVDNAMLYDTFSS-FG 298
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
++ KV + G +KGYG+V F + +A+ ++NG +P+ ++
Sbjct: 299 NILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVE 346
Score = 165 (63.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 47/176 (26%), Positives = 91/176 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I++ +L +D L++ FS G +++ KV K G S+GYG+V F + +AEK ++
Sbjct: 276 IFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKV 333
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237
+G+L+ +P +N F R + + +F + +T ILQ+ S+++ ++
Sbjct: 334 NGTLI--LGKP--INVERFVSKVERYKV--ENKVFFRNADESITIEILQQELSNRFGEIE 387
Query: 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
+ D+N G++KG G V F ++ + + +TE + S+ ID T ++G
Sbjct: 388 SCILKNDAN-GKSKGLGLVEFKNQEDAQKILTESGALIIST----IDGTTTVSSNG 438
Score = 148 (57.2 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 40/155 (25%), Positives = 79/155 (50%)
Query: 147 VIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL--NWATF--SGS--- 199
+++N G+S+G G VEF ++ A+K+L ++ D + N T +G
Sbjct: 390 ILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPIT 449
Query: 200 --------DRRTE---ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG 248
+R TE +DLS+F+ ++ + +++E F+ K+ ++ G K++ D N
Sbjct: 450 IDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFA-KHGTIIGIKIVQDENA- 507
Query: 249 RTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
R KG+GF+ F + E +A+ +NG S+ +++
Sbjct: 508 RNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQV 542
Score = 36 (17.7 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 29 PTPQQPYHWVPP 40
P PQ Y PP
Sbjct: 44 PQPQYQYQMAPP 55
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 204 (76.9 bits), Expect = 8.9e-16, P = 8.9e-16
Identities = 58/190 (30%), Positives = 100/190 (52%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
N +NNN + +T I + L M + + + F G+V + K+IR+K TGQS GYGFV
Sbjct: 99 NNNNNNEPDPKTNLI-VNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVN 157
Query: 164 FYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDS 223
+ + AEK + + +G + N + +++ A S +E+ +++V L ++T S
Sbjct: 158 YVKQEDAEKAINALNGLRLQN--KTIKVSIARPS-----SESIKGANLYVSGLPKNMTQS 210
Query: 224 ILQETFSSKYPSVKGAKVIIDSNTGR-----TKGYGFVRFGDENERSRAMTEMNGVYC-- 276
L+ FS Y + ++++ D+ TG +KG GF+RF E RA+ E+NG
Sbjct: 211 DLESLFSP-YGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKN 269
Query: 277 SSRPMRIDVA 286
S+ P+ + A
Sbjct: 270 STEPITVKFA 279
Score = 121 (47.7 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
T A S IFV +LAPD +++L + F + +V+ KVI D + + KG+GFV +
Sbjct: 355 TIASSGWCIFVYNLAPDTEENVLWQLFGP-FGAVQSVKVIRDLQSNKCKGFGFVTMTNYE 413
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPK 289
E A+ +NG +R +++ T K
Sbjct: 414 EAVLAIQSLNGYTLGNRVLQVSFKTNK 440
Score = 92 (37.4 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 20/91 (21%), Positives = 49/91 (53%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ-----SEGYGFVEFYSRAAAEK 172
+++ L M ++ L + FS G+++ +++ + TG+ S+G GF+ F R A++
Sbjct: 198 LYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADR 257
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRT 203
++ +G+ N+ +P + +A S++ +
Sbjct: 258 AIKELNGTTPKNSTEPITVKFANNPSSNKNS 288
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 207 (77.9 bits), Expect = 9.1e-16, P = 9.1e-16
Identities = 50/163 (30%), Positives = 90/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Score = 170 (64.9 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 52/191 (27%), Positives = 100/191 (52%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L F G ++++V+ + +G+S+G+GFV F A++
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRA 247
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDRRTEA--------------CSDLSIFVGDLAPD 219
+ +G M N Q + + A G +R+TE ++++V +L
Sbjct: 248 VDEMNGKEM-NGKQVY-VGRAQKKG-ERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDG 304
Query: 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++
Sbjct: 305 LDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 280 PMRIDVATPKK 290
P+ + +A K+
Sbjct: 362 PLYVALAQRKE 372
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN RP+RI
Sbjct: 71 TMNFDVIKGRPVRI 84
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 206 (77.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 179 (68.1 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 49/174 (28%), Positives = 93/174 (53%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ + + G S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L++ F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ KV+ D + G++KG+GFV F + +A+ EMNG + + + + A K
Sbjct: 218 LS-VKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 128 (50.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 41/156 (26%), Positives = 75/156 (48%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRF 258
L++ FS + ++ AKV+++ GR+KG+GFV F
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCF 340
Score = 127 (49.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 168 (64.2 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 49/188 (26%), Positives = 90/188 (47%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L F G ++VKV+ + G+S G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKA 247
Query: 174 LQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ +G ++ L R ++++V +L + D
Sbjct: 248 VDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ F+ + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFTP-FGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 181 (68.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 181 (68.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 181 (68.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 181 (68.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 180 (68.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 51/188 (27%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 180 (68.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 51/188 (27%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 181 (68.8 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 205 (77.2 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 49/179 (27%), Positives = 94/179 (52%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
GS + + + ++++GDL + E L++ FS G V +++V R+ T S GY +V F
Sbjct: 27 GSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 86
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
A K ++ + + P + R+ W+ S R+ + + IF+ +L PD+ +
Sbjct: 87 NDHEAGRKAIEQLNYT--PIKGRLCRIMWSQRDPSLRKKGSGN---IFIKNLHPDIDNKA 141
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
L +TFS + + +K+ D N G++KG+GFV F +E A+ +NG+ + + + +
Sbjct: 142 LYDTFSV-FGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Score = 149 (57.5 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 40/157 (25%), Positives = 83/157 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ K+ + + G+S+G+GFV F AA++ + +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + + + D + E +++V ++ + TD QE F+ K+
Sbjct: 187 NGMLL-NGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFA-KFGP 244
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
+ A + D++ G+ KG+GFV + + +A+ +N
Sbjct: 245 IVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALN 280
Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 46/174 (26%), Positives = 87/174 (50%)
Query: 128 DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187
DE F F+ G +V+ + ++ G+ +G+GFV + A K +++ + S + N ++
Sbjct: 232 DEQF-QELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSEL-NGEK 288
Query: 188 PF---------RLNWATFSGSDRRTEACSD---LSIFVGDLAPDVTDSILQETFSSKYPS 235
+ R++ R E + +++FV +L V D L+E F+ Y +
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAP-YGT 347
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ AKV+ N G++KG+GFV F E ++A+TE N + +P+ + +A K
Sbjct: 348 ITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
+GS+ ++ S S++VGDL P V+++ L + FS SV +V D+ T + GY +V
Sbjct: 26 TGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSP-IGSVSSIRVCRDAITKTSLGYAYV 84
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRI-----DVATPKKASG 293
F D +A+ ++N R RI D + KK SG
Sbjct: 85 NFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG 126
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 190 (71.9 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 47/185 (25%), Positives = 94/185 (50%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFT + ++++GDL + E L F+ G V N++V R+ T +S Y +V +Y+ A
Sbjct: 4 NFT-PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGA 62
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQET 228
AE+ L + + + P + R+ W+ S R++ + +F+ +L + L +T
Sbjct: 63 DAERALDTLNNT--PIRGKACRIMWSQRDPSLRKSGVGN---VFIKNLDKGIDHKALYDT 117
Query: 229 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
FS+ + ++ KV+ D +KG+GFV + + +A+ ++NG+ + + + +
Sbjct: 118 FSA-FGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKS 175
Query: 289 KKASG 293
K G
Sbjct: 176 SKERG 180
Score = 155 (59.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 40/157 (25%), Positives = 84/157 (53%)
Query: 140 GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGS 199
G++ N+ ++ + + G+S+G+GF F S AA+ V+++ +G + +P A
Sbjct: 212 GEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHG--KPIYAGRAQ-KKI 267
Query: 200 DRRTEA-------CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 252
+R E +++++ ++ + + L+E FS ++ ++ A V+ D +KG
Sbjct: 268 EREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFS-QFGTITSAIVMKDDKATTSKG 326
Query: 253 YGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+GFV + +E +RA+TEMNG ++P+ + +A K
Sbjct: 327 FGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRK 363
Score = 36 (17.7 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 307 GGPGSNGARVQGSQSDGESNNATVSPSFP 335
G P NG R G Q VS + P
Sbjct: 438 GQPRQNGPRQNGGQPRQNGPRPDVSGAQP 466
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 200 (75.5 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 54/188 (28%), Positives = 94/188 (50%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
SN ++ ++ T+++G+L E + + G VVN+ + ++ + +GYGFVEF
Sbjct: 2 SNKHWEQNKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFD 61
Query: 166 SRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSIL 225
+ +A+ ++ +G + + R+N A+ +D++ A +FV +L P V + IL
Sbjct: 62 TPESADYAARALNGIRV--FGKVIRVNKAS---ADKQKTAEIGAELFVNNLDPQVDEKIL 116
Query: 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
+TFS V V+ D+N +KGYGFV F A MNG Y S+ + ++
Sbjct: 117 FDTFSRFGQLVTPPNVVRDANN-ISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEY 175
Query: 286 ATPKKASG 293
A K G
Sbjct: 176 AYKKDGKG 183
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 204 (76.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 50/163 (30%), Positives = 90/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 181 (68.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 308 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 123 (48.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PD T+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 195 (73.7 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 53/178 (29%), Positives = 96/178 (53%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++E K +++G+L + ++ L F G V +VI N++T QS G+GFV S AE
Sbjct: 147 SEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGS--DRRTEACSD-LSIFVGDLAPDVTDSILQET 228
++ ++ + + +N A GS +R ++VG+L DV + L++
Sbjct: 206 TAVEKFNRYDL--NGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQL 263
Query: 229 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
FS ++ V A+V+ D TGR++G+GFV D +E + A++ ++G R +R++VA
Sbjct: 264 FS-EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 202 (76.2 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 49/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGY FV F ++ RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Score = 187 (70.9 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 52/188 (27%), Positives = 93/188 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L FS G+ ++VKV+ + TG+S+G+GFV F A K
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKA 247
Query: 174 LQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G ++ L R +++++ +L + D
Sbjct: 248 VEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 308 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P V +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPIRI 84
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 202 (76.2 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 49/163 (30%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 73 MNFDVVKG--KPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSA-FGNI 126
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGY FV F ++ RA+ +MNG+ + R
Sbjct: 127 LSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDR 167
Score = 180 (68.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 52/188 (27%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L F G+ ++VKV+ + TG+S G+GFV + A K
Sbjct: 190 EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKA 248
Query: 174 LQSYSGS-LMPNT----------DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G+ L T ++ L R +++++ +L + D
Sbjct: 249 VEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 308
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 309 EKLRKEFSP-FGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 365
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 366 VALAQRKE 373
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PD+T+++L E FS P V +V D T R+ GY +V F + RA+
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 72 TMNFDVVKGKPIRI 85
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 203 (76.5 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 48/174 (27%), Positives = 94/174 (54%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++G+L + E L FS G V +++V R+ T +S GY +V + + A EK L+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++
Sbjct: 122 LNYTLIKG--RPCRIMWSQRDPALRKT---GQGNVFIKNLDVAIDNKALHDTFAA-FGNI 175
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
KV D N G +KGYGFV + + S+A+ +NG+ + + + + PKK
Sbjct: 176 LSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK 228
Score = 179 (68.1 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 45/159 (28%), Positives = 88/159 (55%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D LH+ F+ G +++ KV ++ + G S+GYGFV + + AA + ++
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + + + DR+++ + +I+V ++ P+VTD + F KY
Sbjct: 210 NGMLL-NEKKVYVGHH--IPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE-KY 265
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
V + + D TG+++G+GFV F + S+A+ E+N
Sbjct: 266 GDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 197 (74.4 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 55/196 (28%), Positives = 96/196 (48%)
Query: 113 DET--KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN------KQTGQSEG------ 158
DE+ KT+++G+L + E + F+ G + K+I K S G
Sbjct: 3 DESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQH 62
Query: 159 -----YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFV 213
Y FVEF+ A L + +G + + ++NWAT S ++ + + +FV
Sbjct: 63 TSNDPYCFVEFFEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFV 119
Query: 214 GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
GDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G
Sbjct: 120 GDLSPEITTDDIRAAFAP-FGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGG 178
Query: 274 VYCSSRPMRIDVATPK 289
+ R +R + AT K
Sbjct: 179 QWLGGRQIRTNWATRK 194
Score = 149 (57.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 44/173 (25%), Positives = 82/173 (47%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 178 SGSLMPNTDQPFRLNWATF------SGSD------RRTEACSDLS-----IFVGDLAPDV 220
G + + R NWAT S D R E + S ++ G + +
Sbjct: 177 GGQWLGG--RQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGL 234
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T+ ++++TFS + + +V + KGY F+RF + A+ +NG
Sbjct: 235 TEHLMRQTFSP-FGQIMEIRVFPE------KGYSFIRFSSHESAAHAIVSVNG 280
>UNIPROTKB|K7EQ03 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000592202 Uniprot:K7EQ03
Length = 426
Score = 198 (74.8 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 326 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 384
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 385 MREMNGKYVGSRPIKL 400
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 199 (75.1 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 53/189 (28%), Positives = 96/189 (50%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
+D+ T+++G+L +D+ L F G V + +VI ++++G+S+G+G+V+F + AE
Sbjct: 235 SDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAE 294
Query: 172 KVLQSYSGSLMPNTD--QPFRLNWATFSG--SDRRTEACSDL------SIFVGDLAPDVT 221
K G+ + + F AT S + R + D ++FVG+L D
Sbjct: 295 KAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDAD 354
Query: 222 -DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
DS+ F S+ VK ++ + +GR KG+G+V F + A ++NG + R
Sbjct: 355 EDSV--GAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRN 412
Query: 281 MRIDVATPK 289
R+D +TP+
Sbjct: 413 CRLDYSTPR 421
>UNIPROTKB|F1N7X9 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00717903
UniGene:Bt.62303 GeneTree:ENSGT00390000002894 OMA:FIPHVLQ
EMBL:DAAA02046949 Ensembl:ENSBTAT00000017884 Uniprot:F1N7X9
Length = 448
Score = 198 (74.8 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 348 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 407 MREMNGKYVGSRPIKL 422
>UNIPROTKB|Q0P5L0 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:BC119904 IPI:IPI00717903 RefSeq:NP_001069673.1
UniGene:Bt.62303 ProteinModelPortal:Q0P5L0 STRING:Q0P5L0
GeneID:540172 KEGG:bta:540172 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 NextBio:20878465
Uniprot:Q0P5L0
Length = 448
Score = 198 (74.8 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 348 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 407 MREMNGKYVGSRPIKL 422
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 201 (75.8 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 51/185 (27%), Positives = 97/185 (52%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N ++ ++++GDL ++E+ L FS G V++++V R+ T S GY +V F
Sbjct: 21 GQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNF 80
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
A AE+ + + + + +P R+ W+ + RR+ A + IF+ +L + +
Sbjct: 81 QQPADAERAMDTMNFEALHG--KPMRIMWSQRDPAMRRSGAGN---IFIKNLDKVIDNKS 135
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
+ +TFS + ++ KV ID + G +KGYGFV F E A+ ++NG+ + + + +
Sbjct: 136 IYDTFSL-FGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG 193
Query: 285 VATPK 289
P+
Sbjct: 194 KFQPR 198
Score = 183 (69.5 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 61/195 (31%), Positives = 97/195 (49%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN K GD H+ ET L F+ G + + +V+ + G+S+G+GFV F +
Sbjct: 212 FTNVYVKNF--GD--HYNKET-LEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEE 264
Query: 170 AEKVLQSYSGSLMPNTDQPFRLNWATFSGSDR--------------RTEACSDLSIFVGD 215
AE +Q+ S + TD + A S+R R + ++++V +
Sbjct: 265 AETAVQALHDSTIEGTDLKLHVCRAQ-KKSERHAELKKKHEQHKAERMQKYQGVNLYVKN 323
Query: 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275
L V D L++ F S Y ++ AKV+ D N GR+KG+GFV F E + A+TEMN
Sbjct: 324 LDETVDDDGLKKQFES-YGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKM 381
Query: 276 CSSRPMRIDVATPKK 290
S+P+ + +A K+
Sbjct: 382 VCSKPLYVAIAQRKE 396
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 42/177 (23%), Positives = 87/177 (49%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D +++ FS G +++ KV ++ G S+GYGFV F + AA+ +Q
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKV 180
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRT-EACSDLS-IFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ + F + + +R E + ++V + L++ F+ K+ +
Sbjct: 181 NGMLLAGK-KVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFA-KFGN 238
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
+ +V+ + G++KG+GFV F + E A+ ++ +++ V +K S
Sbjct: 239 ITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKS 293
>UNIPROTKB|K7EP90 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000589871 Uniprot:K7EP90
Length = 458
Score = 198 (74.8 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 358 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 416
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 417 MREMNGKYVGSRPIKL 432
>MGI|MGI:1915285 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915285 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
GeneTree:ENSGT00390000002894 OrthoDB:EOG4J9N0T OMA:FIPHVLQ
EMBL:AK151000 EMBL:BC009148 EMBL:BC011286 EMBL:BC027372
EMBL:BC057928 IPI:IPI00126204 IPI:IPI00853826 RefSeq:NP_598454.2
UniGene:Mm.401747 ProteinModelPortal:Q91V81 SMR:Q91V81
STRING:Q91V81 PhosphoSite:Q91V81 PaxDb:Q91V81 PRIDE:Q91V81
Ensembl:ENSMUST00000042726 GeneID:68035 KEGG:mmu:68035
UCSC:uc009gfn.2 UCSC:uc009gfp.1 InParanoid:Q91V81 NextBio:326262
Bgee:Q91V81 CleanEx:MM_RBM42 Genevestigator:Q91V81 Uniprot:Q91V81
Length = 474
Score = 198 (74.8 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 374 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 433 MREMNGKYVGSRPIKL 448
>RGD|1306184 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 198 (74.8 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 374 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 433 MREMNGKYVGSRPIKL 448
>UNIPROTKB|Q6AXT7 [details] [associations]
symbol:Rbm42 "RNA-binding protein 42" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 198 (74.8 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 374 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 433 MREMNGKYVGSRPIKL 448
>UNIPROTKB|F1RM56 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002894 OMA:FIPHVLQ EMBL:FP243365
RefSeq:XP_003127114.1 UniGene:Ssc.7915 Ensembl:ENSSSCT00000003210
GeneID:100520432 KEGG:ssc:100520432 Uniprot:F1RM56
Length = 477
Score = 198 (74.8 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 377 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 435
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 436 MREMNGKYVGSRPIKL 451
>UNIPROTKB|Q9BTD8 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC002115 HSSP:Q15427 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 OrthoDB:EOG4J9N0T
EMBL:BC002868 EMBL:BC004204 EMBL:BC031682 IPI:IPI00021626
IPI:IPI00074329 IPI:IPI00550442 IPI:IPI00929470 RefSeq:NP_077297.2
UniGene:Hs.5086 ProteinModelPortal:Q9BTD8 SMR:Q9BTD8 IntAct:Q9BTD8
MINT:MINT-2876248 STRING:Q9BTD8 PhosphoSite:Q9BTD8 DMDM:74761247
PaxDb:Q9BTD8 PRIDE:Q9BTD8 DNASU:79171 Ensembl:ENST00000262633
Ensembl:ENST00000360475 GeneID:79171 KEGG:hsa:79171 UCSC:uc002oan.3
UCSC:uc002oap.3 UCSC:uc002oaq.3 GeneCards:GC19P036119
HGNC:HGNC:28117 HPA:HPA043671 MIM:613232 neXtProt:NX_Q9BTD8
PharmGKB:PA162400760 InParanoid:Q9BTD8 OMA:FIPHVLQ PhylomeDB:Q9BTD8
ChiTaRS:RBM42 GenomeRNAi:79171 NextBio:68133 Bgee:Q9BTD8
CleanEx:HS_RBM42 Genevestigator:Q9BTD8 Uniprot:Q9BTD8
Length = 480
Score = 198 (74.8 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 380 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 439 MREMNGKYVGSRPIKL 454
>UNIPROTKB|F1PT81 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101661 EMBL:AAEX03001010 EMBL:AAEX03001009
Ensembl:ENSCAFT00000011116 Uniprot:F1PT81
Length = 483
Score = 198 (74.8 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 41/76 (53%), Positives = 50/76 (65%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RA
Sbjct: 384 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 442
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 443 MREMNGKYVGSRPIKL 458
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 200 (75.5 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 48/163 (29%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGY FV F + ++A+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDR 166
Score = 187 (70.9 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ +G+S+G+GFV + A K
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 247
Query: 174 LQSYSGSLMPN-----------TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G M ++ L R +++++ +L + D
Sbjct: 248 VEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 308 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P V +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPIRI 84
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 200 (75.5 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 48/163 (29%), Positives = 91/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGY FV F + ++A+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDR 166
Score = 187 (70.9 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ +G+S+G+GFV + A K
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 247
Query: 174 LQSYSGSLMPN-----------TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G M ++ L R +++++ +L + D
Sbjct: 248 VEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 308 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P V +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPIRI 84
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 199 (75.1 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 48/163 (29%), Positives = 90/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGY FV F + +A+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 185 (70.2 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 50/188 (26%), Positives = 93/188 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ G+S+G+GFV + A K
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 174 LQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G ++ L R +++++ +L + D
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 308 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P V +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPIRI 84
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 199 (75.1 bits), Expect = 6.3e-15, P = 6.3e-15
Identities = 48/163 (29%), Positives = 90/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS GQ+++++V R+ T +S GY ++ F A AE L +
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ + IF+ ++ + + L +TFS+ + ++
Sbjct: 72 MNYEVIKG--RPIRIMWSQRDPGLRKSGVGN---IFIKNMDESIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGYGFV F + +RA+ MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Score = 173 (66.0 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 52/188 (27%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS-----RA 168
E ++I + +D L N F+ G+ ++V V+ +++ G+S G+GFV F + RA
Sbjct: 189 EFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRA 247
Query: 169 AAE---KVLQS---YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
E K L Y G ++ L R + ++++V +L + D
Sbjct: 248 VTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ F+ Y ++ AKV+ D G ++G+GFV F E ++A+TEMNG S++P+
Sbjct: 308 EKLRKEFAP-YGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 199 (75.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 50/163 (30%), Positives = 90/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S RR+ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRRSGVGN---VFIKNLNKTIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KG+GFV F E RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGHGFVHFETEEAAERAIEKMNGMLLNDR 166
Score = 186 (70.5 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 52/188 (27%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L+ F GQV++VKV+ + + G+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Y G D+ L + R ++++V +L + D
Sbjct: 248 VDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
LQ+ FS + ++ KV+ + GR+KG+GFV F E ++A++EMNG +++P+
Sbjct: 308 ERLQKEFSP-FGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265
C S++VGDL PDVT+++L E FSS P + +V D T R+ GY V F +
Sbjct: 8 CPMASLYVGDLHPDVTEAMLYEKFSSAGP-ILSIRVYRDVITRRSLGYASVNFEQPADAE 66
Query: 266 RAMTEMNGVYCSSRPMRI 283
RA+ MN +P+RI
Sbjct: 67 RALDTMNFDVIKGKPVRI 84
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 199 (75.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 48/163 (29%), Positives = 90/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGY FV F + +A+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 186 (70.5 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 50/188 (26%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ +G+S+G+GFV + A K
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 174 LQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G ++ L R +++++ +L + D
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 308 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P V +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPIRI 84
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 199 (75.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 48/163 (29%), Positives = 90/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGY FV F + +A+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 185 (70.2 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 50/188 (26%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ +G+S+G+GFV + A K
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 174 LQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G ++ L R +++++ +L + D
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 308 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P V +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPIRI 84
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 199 (75.1 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 48/163 (29%), Positives = 90/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGY FV F + +A+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 185 (70.2 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 50/188 (26%), Positives = 93/188 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ G+S+G+GFV + A K
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 174 LQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G ++ L R +++++ +L + D
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 308 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P V +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPIRI 84
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 199 (75.1 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 48/163 (29%), Positives = 90/163 (55%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N G +KGY FV F + +A+ +MNG+ + R
Sbjct: 126 LSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Score = 185 (70.2 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 50/188 (26%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ +G+S+G+GFV + A K
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 174 LQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G ++ L R +++++ +L + D
Sbjct: 248 VEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 308 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P V +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPIRI 84
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 43/140 (30%), Positives = 76/140 (54%)
Query: 119 WIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178
++G+L + E + FS G N K+I + T ++ Y FVEF+ A L + +
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 179 GSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG 238
G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+ + +
Sbjct: 60 GRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAP-FGRISD 115
Query: 239 AKVIIDSNTGRTKGYGFVRF 258
A+V+ D TG++KGYGFV F
Sbjct: 116 ARVVKDMATGKSKGYGFVSF 135
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 198 (74.8 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 51/163 (31%), Positives = 88/163 (53%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
+++ GDL + E L + F H VV+V+V R+ Q +S GY ++ F + A + +++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ + P D+P R+ S D T +IF+ +L + + L ETFSS + ++
Sbjct: 109 LNYT--PLFDRPIRI---MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSS-FGTI 162
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV +D TGR+KGYGFV+F E A+ ++NG+ + +
Sbjct: 163 LSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Score = 160 (61.4 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 63/250 (25%), Positives = 105/250 (42%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
N FTN +++ +L + E L F G V++ V+ Q+G S +GFV
Sbjct: 222 NTPTPRFTN-----VYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVN 275
Query: 164 FYSRAAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIF 212
F AA ++ Y G +++ L R E +++
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLY 335
Query: 213 VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
+ +L V D L+E FS +Y +V +KV+++ G ++G+GFV + + E RA++EMN
Sbjct: 336 LKNLDDSVDDEKLKEMFS-EYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMN 393
Query: 273 GVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGE-------S 325
G +P+ I +A +K + + A GP S G G
Sbjct: 394 GKMIGRKPLYIALAQ-RKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQ 452
Query: 326 NNATVSPSFP 335
N A++ PS P
Sbjct: 453 NGASMVPSQP 462
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 189 (71.6 bits), Expect = 9.3e-15, P = 9.3e-15
Identities = 47/132 (35%), Positives = 71/132 (53%)
Query: 163 EFYSRAAAEKVLQSYSGSLMPNTDQP-FRLNWAT-FSGSDRRTEACSDLSIFVGDLAPDV 220
E A A LQS+ + D+ R+ T + + D IF GDL DV
Sbjct: 150 EAIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRIFCGDLGNDV 209
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
D +L TF+ K+PS + A+V+ D TG++KG+GFV F + + RAM EM+G Y SRP
Sbjct: 210 NDEVLTRTFN-KFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGSRP 268
Query: 281 MRIDVATPKKAS 292
+++ +T ++ S
Sbjct: 269 IKLRKSTWRQRS 280
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 48/163 (29%), Positives = 86/163 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T D + + L M + L + F G++ + K++R+K TGQS GYGFV + A
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EK + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 94 EKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS 146
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 147 -QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 120 (47.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 175 QSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
Q +G NT + P +N S D S ++ V L ++T L+ F S
Sbjct: 4 QLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGS-I 62
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D TG++ GYGFV + D + +A+ +NG+ ++ +++ A P AS
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 193 (73.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 49/164 (29%), Positives = 90/164 (54%)
Query: 111 TNDETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
+ND++KT + + L M + + F G++ + K++R+K TGQS GYGFV +
Sbjct: 82 SNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 141
Query: 170 AEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
AEK + + +G L T + ++++A S + R D +++V L +T L++ F
Sbjct: 142 AEKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 194
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
S +Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 195 S-QYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 128 (50.1 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 327 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 385
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 386 LNGYRLGDRVLQVSFKTNK 404
Score = 98 (39.6 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 21/88 (23%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G +P + +A + S + ++A
Sbjct: 236 NGQKPSGAAEPITVKFAN-NPSQKTSQA 262
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 191 (72.3 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 54/186 (29%), Positives = 98/186 (52%)
Query: 111 TNDETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
T D++KT + + L M + + F G++ + K++R+K TGQS GYGFV +
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 170 AEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
AEK + + +G L T + ++++A S + R D +++V L +T L++ F
Sbjct: 105 AEKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 157
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT 287
S +Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A
Sbjct: 158 S-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 216
Query: 288 -PKKAS 292
P + S
Sbjct: 217 NPSQKS 222
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 348
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 349 LNGYRLGDRVLQVSFKTNK 367
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 192 (72.6 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 68/232 (29%), Positives = 106/232 (45%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
+D+ K ++IG + DE L FS+ G+V+ V V+R K TG+ G+GFV F A +
Sbjct: 3 SDQGK-LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVID 61
Query: 172 KVLQSYSG---------SLMPNTDQPFRLNWATFSGSDRRTEACSDL---SIFVGDLAPD 219
+VLQ M +Q TF+ S R ++ +++ IFVG L P
Sbjct: 62 RVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNAS-RNFDSGANVRTKKIFVGGLPPA 120
Query: 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS----RAMTEMNGVY 275
+T + F + Y V A ++ID T R +G+GFV F E+ + ++NG
Sbjct: 121 LTSDEFRAYFET-YGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNG-- 177
Query: 276 CSSRPMRIDVATPKKASGXXXXXXXXALVLAGG-PGSNGARVQGSQSDGESN 326
+ + + A PK A+ AGG PG G+ G + +SN
Sbjct: 178 ---KQVEVKRALPKDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEGRVDSN 226
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 189 (71.6 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 45/162 (27%), Positives = 88/162 (54%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A S +E D ++++ L ++T +++ FS ++ + ++V++D
Sbjct: 89 KTIKVSYARPS-----SEVIKDANLYISGLPRNMTQKDVEDMFS-RFGRIINSRVLVDQT 142
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
TG ++G F+RF +E A+T NG SS P+ + A
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 118 (46.6 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + FS G+++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S L
Sbjct: 168 NGHKPPGSSEPITVKFAANPNQNKNVALLSQL 199
Score = 116 (45.9 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG + A S IF+ +L D + IL + F + +V KVI D NT + KG+GFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFV 290
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ E + A+ +NG + +++ T K
Sbjct: 291 TMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 200 DRRTEACSD----LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
D E C D ++ V L ++T L+ FSS V+ AK+I D G + GYGF
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGF 65
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
V + + RA+ +NG+ S+ +++ A P
Sbjct: 66 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 191 (72.3 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 54/186 (29%), Positives = 98/186 (52%)
Query: 111 TNDETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
T D++KT + + L M + + F G++ + K++R+K TGQS GYGFV +
Sbjct: 40 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 170 AEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
AEK + + +G L T + ++++A S + R D +++V L +T L++ F
Sbjct: 100 AEKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 152
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT 287
S +Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A
Sbjct: 153 S-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211
Query: 288 -PKKAS 292
P + S
Sbjct: 212 NPSQKS 217
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 357
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 358 LNGYRLGDRVLQVSFKTNK 376
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 191 (72.3 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 54/186 (29%), Positives = 98/186 (52%)
Query: 111 TNDETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
T D++KT + + L M + + F G++ + K++R+K TGQS GYGFV +
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 170 AEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
AEK + + +G L T + ++++A S + R D +++V L +T L++ F
Sbjct: 105 AEKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 157
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT 287
S +Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A
Sbjct: 158 S-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 216
Query: 288 -PKKAS 292
P + S
Sbjct: 217 NPSQKS 222
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 362
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 363 LNGYRLGDRVLQVSFKTNK 381
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 195 (73.7 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 55/184 (29%), Positives = 94/184 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL--- 174
I++ +L MDE L + FS G+ +VKV+R+ GQS G+GF+ F A+K +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHM 251
Query: 175 --QSYSGSLM------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQ 226
+ SG L+ ++ L R ++++V +L + D L+
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLK 311
Query: 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
E FS+ Y + AKV+ +S+ +KG+GFV F E ++A+TEMNG ++P+ + +A
Sbjct: 312 EVFST-YGVITSAKVMTESS--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 287 TPKK 290
K+
Sbjct: 369 QRKE 372
Score = 192 (72.6 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 46/163 (28%), Positives = 87/163 (53%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ QP R+ W+ RR+ + IF+ +L + + L +TFS+ + S+
Sbjct: 72 MNFEMIKG--QPIRIMWSHRDPGLRRSGMGN---IFIKNLENSIDNKALYDTFST-FGSI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
+KV+ + + R G+GFV F +A+ MNG+ + R
Sbjct: 126 LSSKVVYNEHGSR--GFGFVHFETHEAAQKAINTMNGMLLNDR 166
Score = 185 (70.2 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 53/176 (30%), Positives = 97/176 (55%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L + +D L++ FS G +++ KV+ N+ G S G+GFV F + AA+K + +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEH-G-SRGFGFVHFETHEAAQKAINTM 158
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F ++ + + A +I+V +L D+ + LQ+ FS ++
Sbjct: 159 NGMLL-NDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFS-QFGK 216
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
+ KV+ DSN G+++G+GF+ F E +A+ MNG S + + + A K+A
Sbjct: 217 TQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQ-KRA 270
Score = 136 (52.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 200 DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259
D R CS S++VGDL PDVT+++L E FS ++ +V D T R+ GY ++ F
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSP-IGTILSIRVCRDVATRRSLGYAYINFQ 60
Query: 260 DENERSRAMTEMNGVYCSSRPMRI 283
+ RA+ MN +P+RI
Sbjct: 61 QPADAERALDTMNFEMIKGQPIRI 84
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 46/163 (28%), Positives = 87/163 (53%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ QP R+ W+ R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVIKG--QPIRIMWSQRDPGLRKSGVGN---IFIKNLEDSIDNKALYDTFST-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D + R G+GFV F +A+T MNG+ + R
Sbjct: 126 LSCKVVCDDHGSR--GFGFVHFETHEAAQQAITTMNGMLLNDR 166
Score = 187 (70.9 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 53/188 (28%), Positives = 92/188 (48%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E I++ +L +DE L + FS G++++VKV+R+ +G S G+GFV F A+K
Sbjct: 189 EFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Y G ++ L R ++++V +L + D
Sbjct: 248 VMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS Y + AKV+ + G +KG+GFV F E ++A+TEMNG ++P+
Sbjct: 308 EKLRKEFSP-YGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 126 (49.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY ++ F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFEVIKGQPIRI 84
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 44/165 (26%), Positives = 89/165 (53%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T ++++GDL + E+ L+ FS G ++++++ R+K T +S GY +V + A++ L
Sbjct: 1 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 60
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
++ + ++ +P R+ W+ S R++ + +F+ +L + + L FS+ +
Sbjct: 61 ETMNFDVI--NGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSA-FG 114
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
++ KV D G KGYGFV F + RA+ +NG++ + R
Sbjct: 115 NILSCKVACDEK-G-PKGYGFVHFQKQESAERAIDALNGMFLNYR 157
Score = 124 (48.7 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL P+VT+S+L E FS P + ++ D T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGP-ILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 270 EMNGVYCSSRPMRI 283
MN + RP+RI
Sbjct: 62 TMNFDVINGRPVRI 75
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 39/127 (30%), Positives = 70/127 (55%)
Query: 156 SEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGD 215
++ Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGD
Sbjct: 8 NDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGD 64
Query: 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275
L+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 65 LSPEITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW 123
Query: 276 CSSRPMR 282
R +R
Sbjct: 124 LGGRQIR 130
Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 178 SG 179
G
Sbjct: 120 GG 121
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 195 (73.7 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 50/169 (29%), Positives = 92/169 (54%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G + T+ ++++GDL + ++ L++ F+ QVV+V+V R+ T S GYG+V +
Sbjct: 35 GGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNY 94
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
+ AEK +Q + S + + R+ +++ S RR+ + +FV +L V +
Sbjct: 95 SNTDDAEKAMQKLNYSYL--NGKMIRITYSSRDSSARRSGVGN---LFVKNLDKSVDNKT 149
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
L E FS ++ KV D + G+++GYGFV+F E+ A+ ++NG
Sbjct: 150 LHEAFSG-CGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNG 196
Score = 184 (69.8 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 48/159 (30%), Positives = 86/159 (54%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ +L +D LH FS G +V+ KV + GQS GYGFV+F + +A+ ++
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL---SIFVGDLAPDVTDSILQETFSSKYP 234
+G ++ N Q F F + R A + +++V +L+ TD L+ TF +Y
Sbjct: 195 NGKVL-NDKQIFV---GPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFG-QYG 249
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
S+ A V+ D + G+++ +GFV F + + +RA+ +NG
Sbjct: 250 SISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNG 287
Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 47/184 (25%), Positives = 87/184 (47%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS- 176
+++ +L + L F G + + V+R+ G+S +GFV F + A + +++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 177 ----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQ 226
Y G +++ L+ GS L+++V +L VTD L+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
E F+ ++ ++ KV+ D + G +KG GFV F +E SR + EMNG +P+ + +A
Sbjct: 346 ELFA-EFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Query: 287 TPKK 290
K+
Sbjct: 404 QRKE 407
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 190 (71.9 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 48/163 (29%), Positives = 86/163 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T D + + L M + L + F G++ + K++R+K TGQS GYGFV + A
Sbjct: 62 TEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 121
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EK + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 122 EKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS 174
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 175 -QYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 133 (51.9 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 307 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 366 LNGYRLGDRVLQVSFKTNK 384
Score = 115 (45.5 bits), Expect = 0.00034, P = 0.00034
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
S ++ V L +T L+ F S ++ K++ D TG++ GYGFV + D + +
Sbjct: 65 SKTNLIVNYLPQSMTQEELKSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEK 123
Query: 267 AMTEMNGVYCSSRPMRIDVATPKKAS 292
A+ +NG+ ++ +++ A P AS
Sbjct: 124 AINTLNGLRLQTKTIKVSYARPSSAS 149
Score = 106 (42.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 215 NGQKPPAATEPITVKFAN-NPSQKTNQA 241
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 44/163 (26%), Positives = 87/163 (53%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G ++++++ R+K T +S GY +V + A++ L++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L FS+ + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSA-FGNI 116
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV D G KGYGFV F + RA+ MNG++ + R
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYR 157
Score = 119 (46.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL P+VT+++L E FS P + ++ D T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGP-ILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 270 EMNGVYCSSRPMRI 283
+N RP+RI
Sbjct: 62 TLNFDVIKGRPVRI 75
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 44/163 (26%), Positives = 87/163 (53%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G ++++++ R+K T +S GY +V + A++ L++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L FS+ + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSA-FGNI 116
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV D G KGYGFV F + RA+ MNG++ + R
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYR 157
Score = 119 (46.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL P+VT+++L E FS P + ++ D T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGP-ILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 270 EMNGVYCSSRPMRI 283
+N RP+RI
Sbjct: 62 TLNFDVIKGRPVRI 75
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 189 (71.6 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 55/190 (28%), Positives = 94/190 (49%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
+ FTN K GD MD+ L + FS G+ ++VKV+ + +G+S+G+GFV F S
Sbjct: 187 SEFTNVYIKNFG-GD----MDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSH 240
Query: 168 AAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
AA+K ++ + G ++ L R C + +++ +L
Sbjct: 241 EAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNL 300
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L+ FSS + S+ KV+ + G++KG+G + F + ++AMTEMNG
Sbjct: 301 DDTIDDEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRIL 357
Query: 277 SSRPMRIDVA 286
S+P+ I +A
Sbjct: 358 GSKPLSIALA 367
Score = 188 (71.2 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 48/158 (30%), Positives = 89/158 (56%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L+ FS G++++ KV+ + Q G S+GY FV F +++AA++ ++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEM 157
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ + F R ++ R++A ++++ + D+ D L++ FS KY
Sbjct: 158 NGKLLKGC-KVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFS-KYGK 215
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
KV+ DS+ G++KG+GFV F +A+ EMNG
Sbjct: 216 TLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNG 252
Score = 181 (68.8 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 47/157 (29%), Positives = 85/157 (54%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L FS G V+++++ R++ T +S GY +V F A A+K L +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ + RL W+ RR+ + +F+ +L + + L E FS+ + +
Sbjct: 71 MNFDIIKG--KSIRLMWSQRDAYLRRSGIGN---VFIKNLDKSIDNKTLYEHFSA-FGKI 124
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+KV+ D G +KGY FV F +++ RA+ EMNG
Sbjct: 125 LSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEMNG 159
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 192 (72.6 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 55/194 (28%), Positives = 98/194 (50%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS- 176
+++G+L + E +LH F G++ + +++ + TG+S G+G+VEF + A A K ++
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 177 -------------YSGSLMPNTDQP-FR---LNWATFSGSDRRTEACSDLSIFVGDLAPD 219
Y+ N DQ F+ N A G E SD ++FVG+L
Sbjct: 338 KEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPE--SD-TLFVGNLPFS 394
Query: 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
+ + E F + +V G ++ D +GR KG+G+V++ +E +A E+ G R
Sbjct: 395 ANEDSVHEVFGPQ-GNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGR 453
Query: 280 PMRIDVATPKKASG 293
P+R+D +TP+ +G
Sbjct: 454 PIRLDFSTPRANNG 467
Score = 115 (45.5 bits), Expect = 0.00054, P = 0.00054
Identities = 25/91 (27%), Positives = 54/91 (59%)
Query: 202 RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261
+TE + ++FVG+L+ +VT+ L + F ++ + A+++ + +TGR++G+G+V F +
Sbjct: 270 KTEEGASANLFVGNLSWNVTEEWLHQEFE-QFGELS-ARIMTERDTGRSRGFGYVEFTNA 327
Query: 262 NERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
+ ++A M R + +D AT + A+
Sbjct: 328 ADAAKAYEAMKEHEIDGRKINLDYATGRPAN 358
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 184 (69.8 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 47/165 (28%), Positives = 85/165 (51%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T ++++GDL + E L+ FS G ++++++ R+ T S Y +V F AE L
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHAL 69
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ + ++ +P R+ W+ S R++ + IFV +L + + L +T S+ +
Sbjct: 70 DTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFVKNLDKSINNKALYDTVSA-FG 123
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
++ V+ D N G +KGYGFV F RA+ +MNG+ + R
Sbjct: 124 NILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 153 (58.9 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 45/160 (28%), Positives = 86/160 (53%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I++ +L ++ L++ S G +++ V+ + + G S+GYGFV F + AAE+ ++
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + F + S +R E A ++++ + D+ D L++ F
Sbjct: 159 NGMLL-NGRKVFVGQFK--SRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
P++ KV+ D + G++KG+GFV F + +A+ EMNG
Sbjct: 216 PALS-VKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 112 (44.5 bits), Expect = 0.00033, P = 0.00033
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + ++ D T + Y +V F + A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 193 (73.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 45/163 (27%), Positives = 88/163 (53%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVGN---VFIKNLDESIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D + R GYGFV F + +RA+ MNG+ + R
Sbjct: 126 LSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 182 (69.1 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 52/188 (27%), Positives = 91/188 (48%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L FS G ++VKV+ + TG+S G+GFV + + A+K
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Y G ++ L R ++++V +L + D
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS Y ++ AKV+ + G +KG+GFV F E ++A+TEMNG S++P+
Sbjct: 308 DRLRKEFSP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY ++ F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN RP+RI
Sbjct: 71 TMNFEVIKGRPIRI 84
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 44/163 (26%), Positives = 87/163 (53%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G ++++++ R+K T +S GY +V + A++ L++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L FS+ + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSA-FGNI 116
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV D G KGYGFV F + RA+ MNG++ + R
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDVMNGMFLNYR 157
Score = 119 (46.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL P+VT+++L E FS P + ++ D T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGP-ILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 270 EMNGVYCSSRPMRI 283
+N RP+RI
Sbjct: 62 TLNFDVIKGRPVRI 75
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 189 (71.6 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 55/190 (28%), Positives = 94/190 (49%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
+ FTN K GD MD+ L + FS G+ ++VKV+ + +G+S+G+GFV F S
Sbjct: 245 SEFTNVYIKNFG-GD----MDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSH 298
Query: 168 AAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
AA+K ++ + G ++ L R C + +++ +L
Sbjct: 299 EAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNL 358
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L+ FSS + S+ KV+ + G++KG+G + F + ++AMTEMNG
Sbjct: 359 DDTIDDEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRIL 415
Query: 277 SSRPMRIDVA 286
S+P+ I +A
Sbjct: 416 GSKPLSIALA 425
Score = 188 (71.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 48/158 (30%), Positives = 89/158 (56%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L+ FS G++++ KV+ + Q G S+GY FV F +++AA++ ++
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEM 215
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ + F R ++ R++A ++++ + D+ D L++ FS KY
Sbjct: 216 NGKLLKGC-KVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFS-KYGK 273
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
KV+ DS+ G++KG+GFV F +A+ EMNG
Sbjct: 274 TLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNG 310
Score = 181 (68.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 47/157 (29%), Positives = 85/157 (54%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L FS G V+++++ R++ T +S GY +V F A A+K L +
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ + RL W+ RR+ + +F+ +L + + L E FS+ + +
Sbjct: 129 MNFDIIKG--KSIRLMWSQRDAYLRRSGIGN---VFIKNLDKSIDNKTLYEHFSA-FGKI 182
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+KV+ D G +KGY FV F +++ RA+ EMNG
Sbjct: 183 LSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEMNG 217
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 44/163 (26%), Positives = 87/163 (53%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G ++++++ R+K T +S GY +V + A++ L++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ + +F+ +L + + L FS+ + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSA-FGNI 116
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV D G KGYGFV F + RA+ MNG++ + R
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYR 157
Score = 117 (46.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL P+VT+++L E FS P + ++ D T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGP-ILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 270 EMNGVYCSSRPMRI 283
+N RP+RI
Sbjct: 62 TLNFDVIKGRPVRI 75
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 192 (72.6 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 49/173 (28%), Positives = 90/173 (52%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
+++IGDL + E L FS G V++++V R+ + S GY +V F A AE+ L +
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ + RR + +IF+ +L + + + +TFS + ++
Sbjct: 118 MNFEVIHG--RPMRIMWSQRDPAARRA---GNGNIFIKNLDRVIDNKSVYDTFSL-FGNI 171
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
KV D G +KGYGFV F E+ A+ ++NG+ S + + + P+
Sbjct: 172 LSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR 223
Score = 183 (69.5 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 50/186 (26%), Positives = 98/186 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ + +D+ L FS G++ + V+ + Q G+ +G+GFV F + AA + ++
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKL 298
Query: 178 SGSLMPNTDQPFRLNWATFSGS-----DRRTEACSD--------LSIFVGDLAPDVTDSI 224
+ S++ TD + A R+ EA ++++V ++ D+ D
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDG 358
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L++ FSS + ++ AKV++D N GR+KG+GFV F E + A+T+MN ++P+ +
Sbjct: 359 LRDHFSS-FGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVA 416
Query: 285 VATPKK 290
+A K+
Sbjct: 417 LAQRKE 422
Score = 157 (60.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 45/180 (25%), Positives = 90/180 (50%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D +++ FS G +++ KV + + G S+GYGFV F + +A+ ++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKV 205
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSD-----LSIFVGDLAPDVTDSILQETFSSK 232
+G L+ +D+ ++ F +R + + ++FV + + L FS K
Sbjct: 206 NGMLL--SDK--KVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFS-K 260
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
+ + A V+ D+ G+ KG+GFV F D++ +A+ ++N ++ V +K S
Sbjct: 261 FGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKS 319
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 53/188 (28%), Positives = 92/188 (48%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L FS G+ ++VKV+ + TG+S+G+GFV F A+K
Sbjct: 189 EFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Y G ++ L R ++++V +L + D
Sbjct: 248 VADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS Y ++ AKV+ + G +KG+GFV F E ++A+TEMNG S++P+
Sbjct: 308 ERLRKEFSP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 189 (71.6 bits), Expect = 7.8e-14, P = 7.8e-14
Identities = 44/163 (26%), Positives = 88/163 (53%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ + +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVIKG--RPVRIMWSQRDPGLRKSGVGN---VFIKNLDDSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N R G+GFV F + +RA+ MNG+ + R
Sbjct: 126 LSCKVVCDENGSR--GHGFVHFETQEAATRAIQTMNGMLLNDR 166
Score = 126 (49.4 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D + R+ GY ++ F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN RP+RI
Sbjct: 71 TMNFEVIKGRPVRI 84
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 191 (72.3 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 46/173 (26%), Positives = 88/173 (50%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T + ++++G+L + E L F+ G V +++V R+ T +S GY +V F++
Sbjct: 75 TAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDG 134
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EK L + +L+ +P R+ W+ S R+ + +F+ +L P + + L +TFS
Sbjct: 135 EKALDELNYTLIKG--RPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFS 189
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
+ + + KV +D G KGYGFV F + A+ +NG+ + + + +
Sbjct: 190 A-FGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 148 (57.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 44/193 (22%), Positives = 92/193 (47%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN ++I +L + E + F G++ ++ ++++ Q + G+GFV + +
Sbjct: 259 NFTN-----VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHE 312
Query: 169 AAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
A+K + Y G ++ L + +++F+ +L
Sbjct: 313 CAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQ 372
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277
+V D L+ FS+ + ++ AK++ D G++KG+GFV + E ++A+TEMN +
Sbjct: 373 DEVDDERLKAEFSA-FGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430
Query: 278 SRPMRIDVATPKK 290
+P+ + +A K+
Sbjct: 431 GKPLYVALAQRKE 443
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 188 (71.2 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 45/162 (27%), Positives = 87/162 (53%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A S +E D ++++ L +T +++ FS ++ + ++V++D
Sbjct: 89 KTIKVSYARPS-----SEVIKDANLYISGLPRSMTQKDVEDMFS-RFGRIINSRVLVDQT 142
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
TG ++G F+RF +E A+T NG SS P+ + A
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFA 184
Score = 116 (45.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 23/92 (25%), Positives = 48/92 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + FS G+++N +V+ ++ TG S G F+ F R+ AE+ + ++
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNF 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S L
Sbjct: 168 NGHKPPGSSEPITVKFAANPNQNKNVALLSQL 199
Score = 116 (45.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG + A S IF+ +L D + IL + F + +V KVI D NT + KG+GFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFV 290
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ E + A+ +NG + +++ T K
Sbjct: 291 TMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 200 DRRTEACSD----LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
D E C D ++ V L ++T L+ FSS V+ AK+I D G + GYGF
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGF 65
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
V + + RA+ +NG+ S+ +++ A P
Sbjct: 66 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 187 (70.9 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 44/163 (26%), Positives = 85/163 (52%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ QP R+ W+ R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVIKG--QPIRIMWSQRDPGLRKSGVGN---VFIKNLEDSIDNKALYDTFST-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D + R G+GFV F A+ MNG+ + R
Sbjct: 126 LSCKVVCDDHGSR--GFGFVHFETHEAAQNAIRTMNGMLLNDR 166
Score = 185 (70.2 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 52/188 (27%), Positives = 92/188 (48%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E I++ +L +DE L + FS G++++VKV+R+ +G S G+GFV F A+K
Sbjct: 189 EFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Y G ++ L R ++++V +L + D
Sbjct: 248 VTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ F+ Y + AKV+ + G +KG+GFV F E ++A+TEMNG ++P+
Sbjct: 308 EKLRKEFAP-YGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 126 (49.4 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY ++ F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFEVIKGQPIRI 84
Score = 37 (18.1 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 309 PGSNGARVQGSQSDGESNNATVSPSFPCFCKHC 341
P + G G+Q+ G +PS P C
Sbjct: 474 PQTQGVANIGTQTTGPGVMGCATPSGPLLTHKC 506
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 190 (71.9 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 45/163 (27%), Positives = 86/163 (52%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ QP R+ W+ R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVIKG--QPIRIMWSQRDPGLRKSGVGN---IFIKNLEDSIDNKALYDTFST-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D + R G+GFV F A++ MNG+ + R
Sbjct: 126 LSCKVVCDEHGSR--GFGFVHFETHEAAQNAISTMNGMLLNDR 166
Score = 185 (70.2 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 53/188 (28%), Positives = 93/188 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E I++ +L +DE L + FS G++++VKV+R+ +G S G+GFV F A+K
Sbjct: 189 EFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ + Y G ++ L R ++++V +L + D
Sbjct: 248 VVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS Y + AKV+ + G +KG+GFV F E ++A+TEMNG ++P+
Sbjct: 308 EKLRKEFSP-YGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 126 (49.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY ++ F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFEVIKGQPIRI 84
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 188 (71.2 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 45/163 (27%), Positives = 85/163 (52%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ QP R+ W+ R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEMLKG--QPIRIMWSQRDPGLRKSGVGN---IFIKNLEDSIDNKALYDTFST-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV D + R G+GFV F +A+ MNG+ + R
Sbjct: 126 LSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDR 166
Score = 165 (63.1 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 52/166 (31%), Positives = 89/166 (53%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV ++ G S G+GFV F + AA++ + +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEH-G-SRGFGFVHFETHEAAQQAINTM 158
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + F ++ S +R E A +I+V +L DV + LQ+ FS ++
Sbjct: 159 NGMLL-NDRKVFVGHFK--SRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QF 214
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
+ KV+ D N+G ++ +GFV F E +A+ MNG S R
Sbjct: 215 GKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
Score = 126 (49.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY ++ F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFEMLKGQPIRI 84
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 190 (71.9 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 46/163 (28%), Positives = 86/163 (52%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
+++IGDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ + +F+ +L + + L +TFS+ + +
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVGN---VFIKNLDDSIDNKALYDTFSA-FGDI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D R GYGFV F + +RA+ MNG+ + R
Sbjct: 126 LSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 172 (65.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 50/188 (26%), Positives = 90/188 (47%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L FS G ++VKV+ + +G+S G+GFV + + A+K
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Y G ++ L R ++++V +L + D
Sbjct: 248 VTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS Y ++ KV+ + G +KG+GFV F E ++A+TEMNG S++P+
Sbjct: 308 DRLRKEFSP-YGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL PDVT+++L E FS P + +V D T R+ GY ++ F + RA+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN RP+RI
Sbjct: 71 TMNFEVIKGRPIRI 84
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 189 (71.6 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 64/219 (29%), Positives = 98/219 (44%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ + E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF
Sbjct: 480 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEF 535
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + + + RL GS S ++FV L+ D T+
Sbjct: 536 ASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEET 592
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F SV+ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 593 LKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 648
Query: 285 VATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 323
A PK G GG G G R G + G
Sbjct: 649 WAKPKGEGGFGGR--------GGGRGGFGGRGGGRRGQG 679
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 187 (70.9 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 45/162 (27%), Positives = 87/162 (53%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G + +
Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS-- 88
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A S +E D ++++ L +T +++ FS ++ + ++V++D
Sbjct: 89 KTIKVSYARPS-----SEVIKDANLYISGLPRTMTQKDVEDMFS-RFGRIINSRVLVDQT 142
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
TG ++G F+RF +E A+T NG SS P+ + A
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 119 (46.9 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + FS G+++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S L
Sbjct: 168 NGHKPPGSSEPITVKFAANPNQNKNMALLSQL 199
Score = 116 (45.9 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG + A S IF+ +L D + IL + F + +V KVI D NT + KG+GFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFV 290
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ E + A+ +NG + +++ T K
Sbjct: 291 TMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 200 DRRTEACSD----LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
D E C D ++ V L ++T L+ FSS V+ AK+I D G + GYGF
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSS-IGEVESAKLIRDKVAGHSLGYGF 65
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
V + + RA++ +NG+ S+ +++ A P
Sbjct: 66 VNYVTAKDAERAISTLNGLRLQSKTIKVSYARP 98
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 187 (70.9 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 45/162 (27%), Positives = 87/162 (53%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G + +
Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS-- 88
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A S +E D ++++ L +T +++ FS ++ + ++V++D
Sbjct: 89 KTIKVSYARPS-----SEVIKDANLYISGLPRTMTQKDVEDMFS-RFGRIINSRVLVDQT 142
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
TG ++G F+RF +E A+T NG SS P+ + A
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 119 (46.9 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + FS G+++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S L
Sbjct: 168 NGHKPPGSSEPITVKFAANPNQNKNMALLSQL 199
Score = 116 (45.9 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG + A S IF+ +L D + IL + F + +V KVI D NT + KG+GFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFV 290
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ E + A+ +NG + +++ T K
Sbjct: 291 TMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 200 DRRTEACSD----LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
D E C D ++ V L ++T L+ FSS V+ AK+I D G + GYGF
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSS-IGEVESAKLIRDKVAGHSLGYGF 65
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
V + + RA++ +NG+ S+ +++ A P
Sbjct: 66 VNYVTAKDAERAISTLNGLRLQSKTIKVSYARP 98
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 187 (70.9 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 45/162 (27%), Positives = 87/162 (53%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A S +E D ++++ L +T +++ FS ++ + ++V++D
Sbjct: 89 KTIKVSYARPS-----SEVIKDANLYISGLPRTMTQKDVEDMFS-RFGRIINSRVLVDQT 142
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
TG ++G F+RF +E A+T NG SS P+ + A
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 120 (47.3 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + FS G+++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S L
Sbjct: 168 NGHKPPGSSEPITVKFAANPNQNKNVALLSQL 199
Score = 116 (45.9 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG + A S IF+ +L D + IL + F + +V KVI D NT + KG+GFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFV 290
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ E + A+ +NG + +++ T K
Sbjct: 291 TMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 112 (44.5 bits), Expect = 0.00055, P = 0.00055
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 200 DRRTEAC-SDL---SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
D E C D+ ++ V L ++T L+ FSS V+ AK+I D G + GYGF
Sbjct: 7 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGF 65
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
V + + RA+ +NG+ S+ +++ A P
Sbjct: 66 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 187 (70.9 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 45/162 (27%), Positives = 87/162 (53%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G + +
Sbjct: 39 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 96
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A S +E D ++++ L +T +++ FS ++ + ++V++D
Sbjct: 97 KTIKVSYARPS-----SEVIKDANLYISGLPRTMTQKDVEDMFS-RFGRIINSRVLVDQT 150
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
TG ++G F+RF +E A+T NG SS P+ + A
Sbjct: 151 TGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 192
Score = 120 (47.3 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + FS G+++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S L
Sbjct: 176 NGHKPPGSSEPITVKFAANPNQNKNVALLSQL 207
Score = 116 (45.9 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG + A S IF+ +L D + IL + F + +V KVI D NT + KG+GFV
Sbjct: 240 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFV 298
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ E + A+ +NG + +++ T K
Sbjct: 299 TMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 331
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 33/107 (30%), Positives = 50/107 (46%)
Query: 188 PFRLNWATFSGS--DRRTEACSD----LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV 241
P R T S D E C D ++ V L ++T L+ FSS V+ AK+
Sbjct: 1 PHRFLKNTMSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKL 59
Query: 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
I D G + GYGFV + + RA+ +NG+ S+ +++ A P
Sbjct: 60 IRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 106
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 48/163 (29%), Positives = 86/163 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T D + + L M + L + F G++ + K++R+K TGQS GYGFV + A
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EK + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 94 EKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS 146
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 147 -QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 265 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 323
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 324 LNGYRLGDRVLQVSFKTNK 342
Score = 119 (46.9 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 175 QSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
Q +G NT + P +N S D S ++ V L ++T L+ F S
Sbjct: 4 QLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGS-I 62
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D TG++ GYGFV + D + +A+ +NG+ ++ +++ A P AS
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 105 (42.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQA 213
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 45/162 (27%), Positives = 87/162 (53%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G + +
Sbjct: 58 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 115
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A S +E D ++++ L +T +++ FS ++ + ++V++D
Sbjct: 116 KTIKVSYARPS-----SEVIKDANLYISGLPRTMTQKDVEDMFS-RFGRIINSRVLVDQT 169
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
TG ++G F+RF +E A+T NG SS P+ + A
Sbjct: 170 TGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 211
Score = 120 (47.3 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + FS G+++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S L
Sbjct: 195 NGHKPPGSSEPITVKFAANPNQNKNVALLSQL 226
Score = 116 (45.9 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG + A S IF+ +L D + IL + F + +V KVI D NT + KG+GFV
Sbjct: 259 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFV 317
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ E + A+ +NG + +++ T K
Sbjct: 318 TMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 350
Score = 112 (44.5 bits), Expect = 0.00064, P = 0.00064
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 200 DRRTEAC-SDL---SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
D E C D+ ++ V L ++T L+ FSS V+ AK+I D G + GYGF
Sbjct: 34 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGF 92
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
V + + RA+ +NG+ S+ +++ A P
Sbjct: 93 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 125
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 187 (70.9 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 48/163 (29%), Positives = 86/163 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T D + + L M + L + F G++ + K++R+K TGQS GYGFV + A
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EK + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 94 EKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS 146
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 147 -QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 278 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 337 LNGYRLGDRVLQVSFKTNK 355
Score = 120 (47.3 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 175 QSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
Q +G NT + P +N S D S ++ V L ++T L+ F S
Sbjct: 4 QLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGS-I 62
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D TG++ GYGFV + D + +A+ +NG+ ++ +++ A P AS
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 105 (42.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQA 213
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 187 (70.9 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 48/163 (29%), Positives = 86/163 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T D + + L M + L + F G++ + K++R+K TGQS GYGFV + A
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EK + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 94 EKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS 146
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 147 -QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 279 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 338 LNGYRLGDRVLQVSFKTNK 356
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 175 QSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
Q +G NT + P +N S D S ++ V L ++T L+ F S
Sbjct: 4 QLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGS-I 62
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D TG++ GYGFV + D + +A+ +NG+ ++ +++ A P AS
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 105 (42.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQA 213
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 184 (69.8 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 49/162 (30%), Positives = 89/162 (54%)
Query: 113 DETKTIWIGD-LFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
+++KT I + L M + L + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 95 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 146
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 278 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 337 LNGYRLGDRVLQVSFKTNK 355
Score = 112 (44.5 bits), Expect = 0.00066, P = 0.00066
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 175 QSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
Q +G NT + P +N S D S ++ L ++T L+ F S
Sbjct: 4 QLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGS-I 62
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D TG++ GYGFV + D + +A+ +NG+ ++ +++ A P AS
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 105 (42.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQA 213
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 184 (69.8 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 49/162 (30%), Positives = 89/162 (54%)
Query: 113 DETKTIWIGD-LFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
+++KT I + L M + L + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 95 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 146
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 133 (51.9 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 278 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 337 LNGYRLGDRVLQVSFKTNK 355
Score = 112 (44.5 bits), Expect = 0.00066, P = 0.00066
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 175 QSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
Q +G NT + P +N S D S ++ L ++T L+ F S
Sbjct: 4 QLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGS-I 62
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D TG++ GYGFV + D + +A+ +NG+ ++ +++ A P AS
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 105 (42.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQA 213
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 187 (70.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 48/163 (29%), Positives = 86/163 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T D + + L M + L + F G++ + K++R+K TGQS GYGFV + A
Sbjct: 62 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EK + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 122 EKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS 174
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 175 -QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 133 (51.9 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 306 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 364
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 365 LNGYRLGDRVLQVSFKTNK 383
Score = 121 (47.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 35/126 (27%), Positives = 60/126 (47%)
Query: 168 AAAEKVLQSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQ 226
AA E L + G NT + P +N S D S ++ V L ++T L+
Sbjct: 27 AAMETQLSN--GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELK 84
Query: 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
F S ++ K++ D TG++ GYGFV + D + +A+ +NG+ ++ +++ A
Sbjct: 85 SLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 143
Query: 287 TPKKAS 292
P AS
Sbjct: 144 RPSSAS 149
Score = 105 (42.0 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 215 NGQKPPGATEPITVKFAN-NPSQKTNQA 241
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 183 (69.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 51/169 (30%), Positives = 89/169 (52%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEF 164
SNN T D + + L M + L + F G++ + K++R+K T GQS GYGFV +
Sbjct: 58 SNN--TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNY 115
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
AEK + + +G L T + ++++A S + R D +++V L +T
Sbjct: 116 IDPKDAEKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKE 168
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
L++ FS +Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 169 LEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 134 (52.2 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 308 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 367 LNGYRLGDRVLQVSFKTSK 385
Score = 105 (42.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 178 SGSLMPNTDQPFRLNWA 194
+G P +P + +A
Sbjct: 215 NGQKPPGATEPITVKFA 231
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 187 (70.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 48/163 (29%), Positives = 86/163 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T D + + L M + L + F G++ + K++R+K TGQS GYGFV + A
Sbjct: 63 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EK + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 123 EKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS 175
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 176 -QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 133 (51.9 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 307 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 366 LNGYRLGDRVLQVSFKTNK 384
Score = 121 (47.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 35/126 (27%), Positives = 60/126 (47%)
Query: 168 AAAEKVLQSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQ 226
AA E L + G NT + P +N S D S ++ V L ++T L+
Sbjct: 28 AAMETQLSN--GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELK 85
Query: 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
F S ++ K++ D TG++ GYGFV + D + +A+ +NG+ ++ +++ A
Sbjct: 86 SLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 144
Query: 287 TPKKAS 292
P AS
Sbjct: 145 RPSSAS 150
Score = 105 (42.0 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 216 NGQKPPGATEPITVKFAN-NPSQKTNQA 242
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 187 (70.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 48/163 (29%), Positives = 86/163 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T D + + L M + L + F G++ + K++R+K TGQS GYGFV + A
Sbjct: 63 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EK + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 123 EKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS 175
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 176 -QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 127 (49.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 308 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 271 MNGVYCSSRPMRI 283
+NG R +++
Sbjct: 367 LNGYRLGDRVLQV 379
Score = 121 (47.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 35/126 (27%), Positives = 60/126 (47%)
Query: 168 AAAEKVLQSYSGSLMPNT-DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQ 226
AA E L + G NT + P +N S D S ++ V L ++T L+
Sbjct: 28 AAMETQLSN--GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELK 85
Query: 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
F S ++ K++ D TG++ GYGFV + D + +A+ +NG+ ++ +++ A
Sbjct: 86 SLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 144
Query: 287 TPKKAS 292
P AS
Sbjct: 145 RPSSAS 150
Score = 105 (42.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 216 NGQKPPGATEPITVKFAN-NPSQKTNQA 242
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 22 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 80
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 81 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 140
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 141 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 197
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 198 VALAQRKE 205
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 186 (70.5 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 53/184 (28%), Positives = 97/184 (52%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 40 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 99
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 100 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 151
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT-P 288
+Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A P
Sbjct: 152 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 211
Query: 289 KKAS 292
+ S
Sbjct: 212 SQKS 215
Score = 128 (50.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 270 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 328
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 329 LNGYRLGDRVLQVSFKTNK 347
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 186 (70.5 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 53/184 (28%), Positives = 97/184 (52%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 102 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 153
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT-P 288
+Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A P
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
Query: 289 KKAS 292
+ S
Sbjct: 214 SQKS 217
Score = 128 (50.1 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 343
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 344 LNGYRLGDRVLQVSFKTNK 362
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 186 (70.5 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 53/184 (28%), Positives = 97/184 (52%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 102 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 153
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT-P 288
+Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A P
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
Query: 289 KKAS 292
+ S
Sbjct: 214 SQKS 217
Score = 128 (50.1 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 343
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 344 LNGYRLGDRVLQVSFKTNK 362
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 186 (70.5 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 53/184 (28%), Positives = 97/184 (52%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 95 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 146
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT-P 288
+Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A P
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 206
Query: 289 KKAS 292
+ S
Sbjct: 207 SQKS 210
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 350
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 351 LNGYRLGDRVLQVSFKTNK 369
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 186 (70.5 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 53/184 (28%), Positives = 97/184 (52%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 95 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 146
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT-P 288
+Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A P
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 206
Query: 289 KKAS 292
+ S
Sbjct: 207 SQKS 210
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 350
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 351 LNGYRLGDRVLQVSFKTNK 369
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 137 (53.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 36/119 (30%), Positives = 64/119 (53%)
Query: 155 QSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVG 214
QS GYGFV + AEK + + +G L T + ++++A S + R D +++V
Sbjct: 118 QSLGYGFVNYIDPKDAEKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVS 170
Query: 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
L +T L++ FS +Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 171 GLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 228
Score = 133 (51.9 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +LAPD +SIL + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 319 IFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 377
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 378 LNGYRLGDRVLQVSFKTNK 396
Score = 105 (42.0 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G P +P + +A + S + +A
Sbjct: 227 NGQKPPGATEPITVKFAN-NPSQKTNQA 253
Score = 50 (22.7 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG 154
T D + + L M + L + F G++ + K++R+K TG
Sbjct: 44 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG 87
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/83 (44%), Positives = 48/83 (57%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FVG+L PD D +L+E FS KYPS+ V ID T + KG+GFV FG + A E
Sbjct: 58 LFVGNLGPDGNDELLKEAFS-KYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQE 116
Query: 271 MNGVYCSSRPM---RIDVATPKK 290
MNG Y P+ R + + PKK
Sbjct: 117 MNGKYIGQHPVQLKRAESSVPKK 139
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/83 (44%), Positives = 48/83 (57%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FVG+L PD D +L+E FS KYPS+ V ID T + KG+GFV FG + A E
Sbjct: 58 LFVGNLGPDGNDELLKEAFS-KYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQE 116
Query: 271 MNGVYCSSRPM---RIDVATPKK 290
MNG Y P+ R + + PKK
Sbjct: 117 MNGKYIGQHPVQLKRAESSVPKK 139
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 186 (70.5 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 53/184 (28%), Positives = 97/184 (52%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 102 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 153
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT-P 288
+Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A P
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
Query: 289 KKAS 292
+ S
Sbjct: 214 SQKS 217
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 357
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 358 LNGYRLGDRVLQVSFKTNK 376
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 186 (70.5 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 53/184 (28%), Positives = 97/184 (52%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 58 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 117
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 118 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 169
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT-P 288
+Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A P
Sbjct: 170 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 229
Query: 289 KKAS 292
+ S
Sbjct: 230 SQKS 233
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 301 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 359
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 360 LNGYRLGDRVLQVSFKTNK 378
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 186 (70.5 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 53/184 (28%), Positives = 97/184 (52%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 46 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 105
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 106 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 157
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT-P 288
+Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A P
Sbjct: 158 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 217
Query: 289 KKAS 292
+ S
Sbjct: 218 SQKS 221
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 303 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 361
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 362 LNGYRLGDRVLQVSFKTNK 380
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 186 (70.5 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 53/184 (28%), Positives = 97/184 (52%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 107 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 158
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT-P 288
+Y + +++++D TG ++G GF+RF E A+ +NG S + P+ + A P
Sbjct: 159 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 218
Query: 289 KKAS 292
+ S
Sbjct: 219 SQKS 222
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 362
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 363 LNGYRLGDRVLQVSFKTNK 381
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 188 (71.2 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 45/163 (27%), Positives = 85/163 (52%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ QP R+ W+ R++ + IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEMLKG--QPIRIMWSQRDPGLRKSGVGN---IFIKNLEDSIDNKALYDTFST-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV D + R G+GFV F +A+ MNG+ + R
Sbjct: 126 LSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDR 166
Score = 175 (66.7 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 52/188 (27%), Positives = 92/188 (48%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E I++ +L +DE L + FS G++++VKV+R+ +G S +GFV F A+K
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Y+G ++ L R ++++V +L + D
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS Y + AKV+ + G +KG+GFV F E ++A+TEMNG ++P+
Sbjct: 308 DKLRKEFSP-YGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 126 (49.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY ++ F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFEMLKGQPIRI 84
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 183 (69.5 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 44/162 (27%), Positives = 86/162 (53%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G++ + K+IR+K G S GYGFV + + AE+ + + +G + +
Sbjct: 31 MTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A S +E D ++++ L +T +++ FS + + ++V++D
Sbjct: 89 KTIKVSYARPS-----SEVIKDANLYISGLPRTMTQKDVEDMFSP-FGRIINSRVLVDQT 142
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
TG ++G F+RF +E A+T NG SS P+ + A
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 119 (46.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 30/93 (32%), Positives = 46/93 (49%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG + A S IF+ +L D + IL + F + +V KVI D NT + KG+GFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFV 290
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ E S A+ +NG + +++ T K
Sbjct: 291 TMTNYEEASMAIASLNGYRLGDKILQVSFKTNK 323
Score = 118 (46.6 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + FS G+++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S L
Sbjct: 168 NGHKPPGSSEPITVKFAANPNQNKNVALLSQL 199
Score = 114 (45.2 bits), Expect = 0.00032, P = 0.00032
Identities = 28/93 (30%), Positives = 46/93 (49%)
Query: 200 DRRTEACSD----LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
D E C D ++ V L ++T L+ FSS ++ AK+I D G + GYGF
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSS-IGEIESAKLIRDKVAGHSLGYGF 65
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
V + + RA+ +NG+ S+ +++ A P
Sbjct: 66 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98
>WB|WBGene00021901 [details] [associations]
symbol:tag-262 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 HSSP:P09651
EMBL:FO081201 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
RefSeq:NP_498090.1 ProteinModelPortal:Q9N394 SMR:Q9N394
IntAct:Q9N394 STRING:Q9N394 PaxDb:Q9N394 EnsemblMetazoa:Y54H5A.3
GeneID:175700 KEGG:cel:CELE_Y54H5A.3 UCSC:Y54H5A.3 CTD:175700
WormBase:Y54H5A.3 HOGENOM:HOG000239273 InParanoid:Q9N394
OMA:RAMREMD NextBio:889270 Uniprot:Q9N394
Length = 302
Score = 184 (69.8 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
+D +F GDL +V+D +L + F KYPS + AKV+ +S T ++KGYGFV F D + R
Sbjct: 201 NDFRVFCGDLGNEVSDELLAKAFR-KYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVR 259
Query: 267 AMTEMNGVYCSSRPMRI 283
AM EM+G Y +RP+++
Sbjct: 260 AMREMDGKYVGNRPIKL 276
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 188 (71.2 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 56/189 (29%), Positives = 91/189 (48%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ + E+KT+ + +L + E L F + ++KV +N Q G+S+GY F+EF
Sbjct: 390 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEF 445
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + + + RL GS S ++FV L+ D T+
Sbjct: 446 ASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEET 502
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F S++ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 503 LKESFDG---SIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 558
Query: 285 VATPKKASG 293
A PK G
Sbjct: 559 WAKPKGEGG 567
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/147 (23%), Positives = 69/147 (46%)
Query: 143 VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR 202
V ++++ + G+S+G ++EF + A AEK L+ G+ + T + + G
Sbjct: 339 VEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQ--DHRGGKNS 394
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
T + ++ + +L+ T+ LQE F K +K + + G++KGY F+ F
Sbjct: 395 TWSGESKTLVLSNLSYSATEETLQEVFE-KATHIK----VPQNQNGKSKGYAFIEFASFE 449
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ A+ N R +R+++ P+
Sbjct: 450 DAKEALNSCNKREIEGRAIRLELQGPR 476
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 188 (71.2 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 56/189 (29%), Positives = 91/189 (48%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ + E+KT+ + +L + E L F + ++KV +N Q G+S+GY F+EF
Sbjct: 395 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEF 450
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + + + RL GS S ++FV L+ D T+
Sbjct: 451 ASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEET 507
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F S++ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 508 LKESFDG---SIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 563
Query: 285 VATPKKASG 293
A PK G
Sbjct: 564 WAKPKGEGG 572
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/147 (23%), Positives = 69/147 (46%)
Query: 143 VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR 202
V ++++ + G+S+G ++EF + A AEK L+ G+ + T + + G
Sbjct: 344 VEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQ--DHRGGKNS 399
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
T + ++ + +L+ T+ LQE F K +K + + G++KGY F+ F
Sbjct: 400 TWSGESKTLVLSNLSYSATEETLQEVFE-KATHIK----VPQNQNGKSKGYAFIEFASFE 454
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ A+ N R +R+++ P+
Sbjct: 455 DAKEALNSCNKREIEGRAIRLELQGPR 481
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 188 (71.2 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 56/189 (29%), Positives = 91/189 (48%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ + E+KT+ + +L + E L F + ++KV +N Q G+S+GY F+EF
Sbjct: 395 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEF 450
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + + + RL GS S ++FV L+ D T+
Sbjct: 451 ASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEET 507
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F S++ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 508 LKESFDG---SIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 563
Query: 285 VATPKKASG 293
A PK G
Sbjct: 564 WAKPKGEGG 572
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/147 (23%), Positives = 69/147 (46%)
Query: 143 VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR 202
V ++++ + G+S+G ++EF + A AEK L+ G+ + T + + G
Sbjct: 344 VEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQ--DHRGGKNS 399
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
T + ++ + +L+ T+ LQE F K +K + + G++KGY F+ F
Sbjct: 400 TWSGESKTLVLSNLSYSATEETLQEVFE-KATHIK----VPQNQNGKSKGYAFIEFASFE 454
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ A+ N R +R+++ P+
Sbjct: 455 DAKEALNSCNKREIEGRAIRLELQGPR 481
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 188 (71.2 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 56/189 (29%), Positives = 91/189 (48%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ + E+KT+ + +L + E L F + ++KV +N Q G+S+GY F+EF
Sbjct: 485 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEF 540
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + + + RL GS S ++FV L+ D T+
Sbjct: 541 ASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEET 597
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F S++ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 598 LKESFDG---SIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 653
Query: 285 VATPKKASG 293
A PK G
Sbjct: 654 WAKPKGEGG 662
Score = 118 (46.6 bits), Expect = 0.00038, P = 0.00038
Identities = 34/152 (22%), Positives = 67/152 (44%)
Query: 143 VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR 202
V ++++ + G+S+G ++EF + A AEK L+ G+ + D R
Sbjct: 427 VEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHR 484
Query: 203 -----TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257
T + ++ + +L+ T+ LQE F K +K + + G++KGY F+
Sbjct: 485 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE-KATHIK----VPQNQNGKSKGYAFIE 539
Query: 258 FGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
F + A+ N R +R+++ P+
Sbjct: 540 FASFEDAKEALNSCNKREIEGRAIRLELQGPR 571
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 187 (70.9 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ +G+S+G+GFV + A K
Sbjct: 118 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 176
Query: 174 LQSYSGSLMPN-----------TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G M ++ L R +++++ +L + D
Sbjct: 177 VEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 236
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 237 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 293
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 294 VALAQRKE 301
Score = 172 (65.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 48/174 (27%), Positives = 93/174 (53%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L++ FS G +++ KV+ + + G S+GY FV F ++ AA K ++
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 87
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ +A ++++ + +V D L+E FS ++
Sbjct: 88 NGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFS-QFGK 145
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
KV+ D + G++KG+GFV + + ++A+ EMNG S + + + A K
Sbjct: 146 TLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 198
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 185 (70.2 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 48/162 (29%), Positives = 88/162 (54%)
Query: 113 DETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D++KT + + L M + + F G++ + K++R+K TGQS GYGFV + AE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
K + + +G L T + ++++A S + R D +++V L +T L++ FS
Sbjct: 107 KAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLFS- 158
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 159 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 128 (50.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+PD +S+L + F + +V KVI D NT + KG+GFV + +E + A+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 348
Query: 271 MNGVYCSSRPMRIDVATPK 289
+NG R +++ T K
Sbjct: 349 LNGYRLGDRVLQVSFKTNK 367
Score = 112 (44.5 bits), Expect = 0.00070, P = 0.00070
Identities = 27/97 (27%), Positives = 50/97 (51%)
Query: 199 SDRRTEACSDLS---IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
S +T A +D S + V L ++T + F S ++ K++ D TG++ GYGF
Sbjct: 38 SPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRDKITGQSLGYGF 96
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
V + D + +A+ +NG+ ++ +++ A P AS
Sbjct: 97 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 133
Score = 99 (39.9 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 21/88 (23%), Positives = 45/88 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ L M + L FS G+++ +++ ++ TG S G GF+ F R AE+ ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEA 205
+G +P + +A + S + ++A
Sbjct: 199 NGQKPSGATEPITVKFAN-NPSQKTSQA 225
>WB|WBGene00011589 [details] [associations]
symbol:T07F10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00510000047100 EMBL:Z77669 PIR:T24666
RefSeq:NP_506222.2 ProteinModelPortal:Q22318 SMR:Q22318
STRING:Q22318 PaxDb:Q22318 EnsemblMetazoa:T07F10.3 GeneID:179765
KEGG:cel:CELE_T07F10.3 UCSC:T07F10.3 CTD:179765 WormBase:T07F10.3
HOGENOM:HOG000018915 InParanoid:Q22318 OMA:CFANDSY NextBio:906768
Uniprot:Q22318
Length = 371
Score = 185 (70.2 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 54/165 (32%), Positives = 86/165 (52%)
Query: 112 NDETKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
N+ +T+WIGD+ W +ET L F+ G KV R + +GY F+EF + A
Sbjct: 64 NNAQRTLWIGDVPTDWTEET-LSQVFTECGHAP-YKVKRVYVKDELKGYCFIEFITFDEA 121
Query: 171 EKVLQSYSGSLMPN-TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
+ L +G+ +P D F L +A S + S+ ++ V + D+ D+ L F
Sbjct: 122 RQTLYDLNGNRIPGFKDIRFNLCFANDSYNPN-----SEFNLHVSSVPDDMADAELYRIF 176
Query: 230 SSKYPSVKGAKVI--IDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
KY S +GAK+ +D G +KG GFVRFG++ ++ A+ EM+
Sbjct: 177 D-KYQSCRGAKMFRFVD---GSSKGSGFVRFGNQTDQQMALVEMH 217
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 184 (69.8 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 47/165 (28%), Positives = 85/165 (51%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T ++++GDL + E L+ FS G ++++++ R+ T S Y +V F AE L
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHAL 69
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ + ++ +P R+ W+ S R++ + IFV +L + + L +T S+ +
Sbjct: 70 DTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFVKNLDKSINNKALYDTVSA-FG 123
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
++ V+ D N G +KGYGFV F RA+ +MNG+ + R
Sbjct: 124 NILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 155 (59.6 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 47/176 (26%), Positives = 92/176 (52%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I++ +L ++ L++ S G +++ V+ + + G S+GYGFV F + AAE+ ++
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + F + S +R E A ++++ + D+ D L++ F
Sbjct: 159 NGMLL-NGRKVFVGQFK--SRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
P++ KV+ D + G++KG+GFV F + +A+ EMNG + + + + A K
Sbjct: 216 PALS-VKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 135 (52.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 46/163 (28%), Positives = 80/163 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSG--SDRRTEACSDLSIFVGDLAPDV 220
+ Q Y G ++ L TF DR T ++++V +L +
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELK-RTFEQMKQDRITRY-QVVNLYVKNLDDGI 305
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263
D L++ FS + ++ AKV+++ GR+KG+GFV F E
Sbjct: 306 DDERLRKAFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEE 345
Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + ++ D T + Y +V F + A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 187 (70.9 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 47/169 (27%), Positives = 91/169 (53%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T ++++GDL + ++ L F+ GQVV+V+V R+ T +S GYG+V + + A + L
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ M + R+ ++ S R++ + IF+ +L + L ETFS+ P
Sbjct: 104 NELN--FMALNGRAIRVMYSVRDPSLRKSGVGN---IFIKNLDKSIDHKALHETFSAFGP 158
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
+ KV +D + G++KGYGFV++ + A+ ++NG+ + + + +
Sbjct: 159 -ILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 158 (60.7 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 58/228 (25%), Positives = 107/228 (46%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
+G FTN +++ +L + + L+ F G + ++R+ + G+S+G+GFV
Sbjct: 217 SGEKVKFTN-----VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVN 270
Query: 164 FYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEA----------CSDLS--- 210
F + A + + + +G D+ + + A S+R TE +D S
Sbjct: 271 FENSDDAARAVDALNGKTFD--DKEWFVGKAQ-KKSERETELKQKFEQSLKEAADKSQGS 327
Query: 211 -IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
++V +L VTD L+E F+ + ++ KV+ D + G ++G GFV F E +RA+T
Sbjct: 328 NLYVKNLDESVTDDKLREHFAP-FGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAIT 385
Query: 270 EMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQ 317
EMNG ++P+ + +A K+ + P + G R+Q
Sbjct: 386 EMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQ 433
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 184 (69.8 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 51/192 (26%), Positives = 99/192 (51%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
S N T+D + + L M + + F G++ + K++R+K TGQS GYGFV +
Sbjct: 28 STNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV 87
Query: 166 SRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSIL 225
A+K + + +G L T + ++++A S + R D +++V L ++ +
Sbjct: 88 DPNDADKAINTLNG-LKLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKDM 140
Query: 226 QETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGV--YCSSRPMR 282
++ FS +Y + +++++D T G ++G GF+RF NE A+ +NG ++ P+
Sbjct: 141 EQLFS-QYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPIT 199
Query: 283 IDVAT-PKKASG 293
+ A P + +G
Sbjct: 200 VKFANNPSQKTG 211
Score = 121 (47.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFV +L+P+ +S+L + F + +V KVI D T + KG+GFV + +E + A+
Sbjct: 278 IFVYNLSPEADESVLWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 271 MNGVYCSSRPMRIDVATPKK 290
+NG R +++ T K+
Sbjct: 337 LNGYRLGDRVLQVSFKTSKQ 356
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 187 (70.9 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 62/211 (29%), Positives = 96/211 (45%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ ++ E+KT+ + +L + E L F + +KV +N+Q G+S+GY F+EF
Sbjct: 476 GKNSTWSG-ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQ-GKSKGYAFIEF 530
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + M + RL GS S ++FV L+ D T+
Sbjct: 531 ASFEDAKEALNSCNK--MEIEGRTIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEET 587
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F SV+ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 588 LKESFEG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 643
Query: 285 VATPKKASGXXXXXXXXALVLAGGPGSNGAR 315
A PK G G G G R
Sbjct: 644 WAKPKGEGGFGGRGGGRGGFGGRGGGRGGGR 674
Score = 119 (46.9 bits), Expect = 0.00029, P = 0.00029
Identities = 38/144 (26%), Positives = 66/144 (45%)
Query: 152 QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGS-DRRTEACSDLS 210
Q G+S+G ++EF S A AEK L+ G+ + + L + G RT S S
Sbjct: 425 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG--RSVSLYYTGEKGQRQERTGKNSTWS 482
Query: 211 -----IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265
+ + +L+ T+ LQE F K +K + + G++KGY F+ F +
Sbjct: 483 GESKTLVLSNLSYSATEETLQEVFE-KATFIK----VPQNQQGKSKGYAFIEFASFEDAK 537
Query: 266 RAMTEMNGVYCSSRPMRIDVATPK 289
A+ N + R +R+++ P+
Sbjct: 538 EALNSCNKMEIEGRTIRLELQGPR 561
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 169 (64.5 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG------- 83
Query: 187 QPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID 244
RL T S R +E+ D ++++ L +T +++ F + + ++V++D
Sbjct: 84 --LRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLP-FGRIINSRVLVD 140
Query: 245 SNTGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
TG ++G F+RF +E A+ NG SS P+ + A
Sbjct: 141 QATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
Score = 122 (48.0 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY 253
++ SG + + A S IF+ +L D + IL + F + +V KVI D NT + KG+
Sbjct: 229 SSISGVNVASSASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGF 287
Query: 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
GFV + E + A+ +NG + +++ T K
Sbjct: 288 GFVTMTNYEEAAMAIASLNGYRLGDKTLQVFFKTSK 323
Score = 122 (48.0 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 200 DRRTEACSD----LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
D + C D ++ V L ++T L+ FSS V+ AK+I D G + GYGF
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGF 65
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
V + + + RA+ +NG+ S+ +++ VA P S
Sbjct: 66 VNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSES 102
Score = 111 (44.1 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + F G+++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S L
Sbjct: 168 NGHKPPGSSEPITVKFAANPNQNKNMALLSQL 199
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 179 (68.1 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 49/188 (26%), Positives = 93/188 (49%)
Query: 107 NNNFTNDETKT---IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
N+NF + + + I+IG L T + F G++ + ++R++ TGQ G+GF+
Sbjct: 7 NDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFIT 66
Query: 164 FYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDS 223
F + +KV++ ++ + +G ++ + + IFVG + VT+
Sbjct: 67 FADPSVVDKVIEDTH--VINGKQVEIKRTIPKGAGGNQSKDIKTK-KIFVGGIPSTVTED 123
Query: 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
L++ F+ KY +V +VI D T R++G+GFV F E +++ N + + + I
Sbjct: 124 ELKDFFA-KYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEI 182
Query: 284 DVATPKKA 291
A PKK+
Sbjct: 183 KKAEPKKS 190
Score = 36 (17.7 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 306 AGGPGSNGARVQGSQSDGESNNATVSP 332
+GGPG + G G S+++ P
Sbjct: 329 SGGPGGSYEGAGGPYGRGYSSSSRYHP 355
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 186 (70.5 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 45/163 (27%), Positives = 86/163 (52%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
+++IGDL + E L+ FS G +++++V R+ T +S Y ++ F A AE+ L +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVIKG--RPIRIMWSQRDPGLRKSGVGN---VFIKNLDESIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D + R GYGFV F +RA+ MNG+ + R
Sbjct: 126 LSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTMNGMLLNDR 166
Score = 173 (66.0 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 50/188 (26%), Positives = 90/188 (47%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L FS G ++VKV+ + +G+S G+GFV + + A+K
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKA 247
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Y G ++ L R ++++V +L + D
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ F Y ++ AKV+ + G +KG+GFV F E ++A+TEMNG S++P+
Sbjct: 308 DRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 365 VALAQRKE 372
Score = 124 (48.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL PDVT+++L E FS P + +V D T R+ Y ++ F + RA+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN RP+RI
Sbjct: 71 TMNFEVIKGRPIRI 84
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 186 (70.5 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 50/188 (26%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ +G+S+G+GFV + A K
Sbjct: 229 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 287
Query: 174 LQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G ++ L R +++++ +L + D
Sbjct: 288 VEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 347
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 348 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 404
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 405 VALAQRKE 412
Score = 174 (66.3 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 48/174 (27%), Positives = 94/174 (54%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L++ FS G +++ KV+ + + G S+GY FV F ++ AA+K ++
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 198
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ +A ++++ + +V D L+E FS ++
Sbjct: 199 NGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QFGK 256
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
KV+ D + G++KG+GFV + + ++A+ EMNG S + + + A K
Sbjct: 257 TLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 309
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 184 (69.8 bits), Expect = 9.7e-13, P = 9.7e-13
Identities = 57/235 (24%), Positives = 112/235 (47%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 166 SRAAAEKVL----QSYSG-SLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
++ + Q G ++ Q + N A ++ + + + ++VG L ++
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNI 261
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 262 TEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 281 MRIDVATPKK-ASGXXXXXXXXALVLAG-GPGSNGARVQGSQSDGESNNATVSPS 333
M++ T + AS L G G+ G R+Q E + P+
Sbjct: 321 MKVGHVTERTDASSASSFLDSDELERTGIDLGTTG-RLQLMARLAEGTGLQIPPA 374
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 183 (69.5 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 47/163 (28%), Positives = 85/163 (52%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T ++++GDL + E L F+ G V+++++ R+ + +S GYG+V F A
Sbjct: 5 TKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDA 64
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
+K L++ + L+ + RL W+ R++ + +F+ +L + + L E FS
Sbjct: 65 QKALETMNFDLIKG--KSIRLMWSQRDACLRKSGIGN---VFIKNLDKSIDNKTLYEHFS 119
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+ + +KV+ D G +KGYGFV + D+ RA+ EMNG
Sbjct: 120 P-FGKIMSSKVMTDEE-G-SKGYGFVHYQDQRAADRAIEEMNG 159
Score = 171 (65.3 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 58/235 (24%), Positives = 108/235 (45%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L+ FS G++++ KV+ +++ G S+GYGFV + + AA++ ++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEE-G-SKGYGFVHYQDQRAADRAIEEM 157
Query: 178 SGSLMPNTDQPFRLNWATF-SGSDRRTEA----CSDLSIFVGDLAPDVTDSILQETFSSK 232
+G L+ ++ L A F S DR E ++++ + D+ D L+ FS K
Sbjct: 158 NGKLLRDST----LFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFS-K 212
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
Y KV+ D++ G++K +GFV F A+ +MNG + + + + A K
Sbjct: 213 YGQTLSVKVMKDAS-GKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVER 271
Query: 293 GXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATVSPSFPCFCKHCQVSVSQ 347
+ A++ D ++ T+ F F C+V V Q
Sbjct: 272 QAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQ 326
Score = 155 (59.6 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 47/181 (25%), Positives = 87/181 (48%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + FS GQ ++VKV+++ +G+S+ +GFV F S AA+
Sbjct: 188 EFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNA 246
Query: 174 LQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ + G ++ L R A +++ +L + D
Sbjct: 247 VEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDD 306
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ KV+ ++ G++KG+G + F ++AM EMNG S+P+
Sbjct: 307 ETLRKEFSV-FGSICRVKVMQEA--GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLN 363
Query: 283 I 283
I
Sbjct: 364 I 364
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 185 (70.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 50/188 (26%), Positives = 93/188 (49%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + +D+ L FS G+ ++VKV+R+ G+S+G+GFV + A K
Sbjct: 91 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 149
Query: 174 LQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
++ +G ++ L R +++++ +L + D
Sbjct: 150 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 209
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+
Sbjct: 210 EKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 266
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 267 VALAQRKE 274
Score = 178 (67.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 49/174 (28%), Positives = 94/174 (54%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L++ FS G +++ KV+ + + G S+GY FV F ++ AA+K ++
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ +A ++++ + +V D L+E FS ++
Sbjct: 61 NGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QFGK 118
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
KV+ D N G++KG+GFV + + ++A+ EMNG S + + + A K
Sbjct: 119 TLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 171
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 185 (70.2 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 44/180 (24%), Positives = 96/180 (53%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
+ S++ ++ T ++++GDL + E L++ F+ + +V++ ++ +G+S YG+
Sbjct: 12 DASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYAN 71
Query: 164 FYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDS 223
F SR A ++ + SL+ + R+ W+ + RR + +FV +L VT++
Sbjct: 72 FLSRQDANLAIEKKNNSLL--NGKMIRVMWSVRAPDARRNGVGN---VFVKNLPESVTNA 126
Query: 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
+LQ+ F K+ ++ KV + G+++GYGFV+F E+ A+ +N + + + +
Sbjct: 127 VLQDMFK-KFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
Score = 144 (55.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 43/174 (24%), Positives = 84/174 (48%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ +L + L + F G +V+ KV + G+S GYGFV+F AA +Q+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237
+ +++ D+ + +DR ++++ +L DV++ +L+E F+ ++ +
Sbjct: 173 NSTIV--ADKEIYVG-KFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFA-EFGKIV 228
Query: 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
+ D N +GY FV F + + RA +NG S+ + + A KKA
Sbjct: 229 SLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ-KKA 280
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 185 (70.2 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 47/178 (26%), Positives = 92/178 (51%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
+ + ++++G+L ++E L FS GQV +++V R+ + +S GY +V ++ EK
Sbjct: 49 ENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEK 108
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + + P +P R+ W+ S RR+ D +IF+ +L P + + L +TFS+
Sbjct: 109 AIEELNYN--PIEGRPCRIMWSQRDPSARRS---GDGNIFIKNLHPAIDNKALHDTFSA- 162
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
+ + KV D G++K +GFV + A+ +NG+ + R + + KK
Sbjct: 163 FGKILSCKVATDE-FGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKK 219
Score = 164 (62.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 52/192 (27%), Positives = 93/192 (48%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN K I DL ++ +E+F FS G++ ++ + Q G+S+G+GFV F
Sbjct: 231 NFTNIYVKNI---DL-NYSEESF-EKLFSPFGKITSI-YLEKDQDGKSKGFGFVNFEDHE 284
Query: 169 AAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
+A K ++ Y G ++ L + + +++FV +L
Sbjct: 285 SAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLD 344
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277
+ L+E F + ++ AKV++D G++KG+GFV F E ++A+TEMN +
Sbjct: 345 DTIDSEKLEEEFKP-FGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEMNTRMIN 402
Query: 278 SRPMRIDVATPK 289
+P+ + +A K
Sbjct: 403 GKPLYVALAQRK 414
Score = 152 (58.6 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 45/175 (25%), Positives = 89/175 (50%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D LH+ FS G++++ KV + + GQS+ +GFV + + AAE +++
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY-PSV 236
+G L+ N + F S DR ++ + F ++ + +E+F + P
Sbjct: 201 NGMLL-NDREVFV--GKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFG 257
Query: 237 KGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
K + ++ + G++KG+GFV F D +A+ E+N + + + + A K+
Sbjct: 258 KITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKR 312
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 184 (69.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 57/235 (24%), Positives = 112/235 (47%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 166 SRAAAEKVL----QSYSG-SLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
++ + Q G ++ Q + N A ++ + + + ++VG L ++
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNI 261
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 262 TEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 281 MRIDVATPKK-ASGXXXXXXXXALVLAG-GPGSNGARVQGSQSDGESNNATVSPS 333
M++ T + AS L G G+ G R+Q E + P+
Sbjct: 321 MKVGHVTERTDASSASSFLDSDELERTGIDLGTTG-RLQLMARLAEGTGLQIPPA 374
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 184 (69.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 57/235 (24%), Positives = 112/235 (47%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 166 SRAAAEKVL----QSYSG-SLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
++ + Q G ++ Q + N A ++ + + + ++VG L ++
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNI 261
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 262 TEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 281 MRIDVATPKK-ASGXXXXXXXXALVLAG-GPGSNGARVQGSQSDGESNNATVSPS 333
M++ T + AS L G G+ G R+Q E + P+
Sbjct: 321 MKVGHVTERTDASSASSFLDSDELERTGIDLGTTG-RLQLMARLAEGTGLQIPPA 374
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 184 (69.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 57/235 (24%), Positives = 112/235 (47%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 166 SRAAAEKVL----QSYSG-SLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
++ + Q G ++ Q + N A ++ + + + ++VG L ++
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNI 261
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 262 TEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 281 MRIDVATPKK-ASGXXXXXXXXALVLAG-GPGSNGARVQGSQSDGESNNATVSPS 333
M++ T + AS L G G+ G R+Q E + P+
Sbjct: 321 MKVGHVTERTDASSASSFLDSDELERTGIDLGTTG-RLQLMARLAEGTGLQIPPA 374
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 184 (69.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 57/235 (24%), Positives = 112/235 (47%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 166 SRAAAEKVL----QSYSG-SLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
++ + Q G ++ Q + N A ++ + + + ++VG L ++
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNI 261
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 262 TEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 281 MRIDVATPKK-ASGXXXXXXXXALVLAG-GPGSNGARVQGSQSDGESNNATVSPS 333
M++ T + AS L G G+ G R+Q E + P+
Sbjct: 321 MKVGHVTERTDASSASSFLDSDELERTGIDLGTTG-RLQLMARLAEGTGLQIPPA 374
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 184 (69.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 57/235 (24%), Positives = 112/235 (47%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 166 SRAAAEKVL----QSYSG-SLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
++ + Q G ++ Q + N A ++ + + + ++VG L ++
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNI 261
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 262 TEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 281 MRIDVATPKK-ASGXXXXXXXXALVLAG-GPGSNGARVQGSQSDGESNNATVSPS 333
M++ T + AS L G G+ G R+Q E + P+
Sbjct: 321 MKVGHVTERTDASSASSFLDSDELERTGIDLGTTG-RLQLMARLAEGTGLQIPPA 374
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 184 (69.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 57/235 (24%), Positives = 112/235 (47%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 166 SRAAAEKVL----QSYSG-SLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
++ + Q G ++ Q + N A ++ + + + ++VG L ++
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNI 261
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 262 TEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 281 MRIDVATPKK-ASGXXXXXXXXALVLAG-GPGSNGARVQGSQSDGESNNATVSPS 333
M++ T + AS L G G+ G R+Q E + P+
Sbjct: 321 MKVGHVTERTDASSASSFLDSDELERTGIDLGTTG-RLQLMARLAEGTGLQIPPA 374
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 184 (69.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 57/235 (24%), Positives = 112/235 (47%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 166 SRAAAEKVL----QSYSG-SLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
++ + Q G ++ Q + N A ++ + + + ++VG L ++
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNI 261
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 262 TEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 281 MRIDVATPKK-ASGXXXXXXXXALVLAG-GPGSNGARVQGSQSDGESNNATVSPS 333
M++ T + AS L G G+ G R+Q E + P+
Sbjct: 321 MKVGHVTERTDASSASSFLDSDELERTGIDLGTTG-RLQLMARLAEGTGLQIPPA 374
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 184 (69.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 57/235 (24%), Positives = 112/235 (47%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFV 202
Query: 166 SRAAAEKVL----QSYSG-SLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
++ + Q G ++ Q + N A ++ + + + ++VG L ++
Sbjct: 203 DVSSVPLAIGLTGQRVLGVPIIVQASQAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNI 261
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 262 TEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 281 MRIDVATPKK-ASGXXXXXXXXALVLAG-GPGSNGARVQGSQSDGESNNATVSPS 333
M++ T + AS L G G+ G R+Q E + P+
Sbjct: 321 MKVGHVTERTDASSASSFLDSDELERTGIDLGTTG-RLQLMARLAEGTGLQIPPA 374
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 184 (69.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 52/193 (26%), Positives = 96/193 (49%)
Query: 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL----QSYSG-SLMPNTD 186
L + FS G+V +V++I ++ + +S+G +VEF + + Q G ++
Sbjct: 183 LEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDSTSVPLAIGLTGQRVLGVPIIVQAS 242
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
Q + N A S + + ++VG L ++T+ +L+ F + ++G ++++DS
Sbjct: 243 QAEK-NRAAAMASMLQRGGAGPMRLYVGSLHFNITEDMLRGIFEP-FGKIEGIQLMMDSE 300
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK-ASGXXXXXXXXALVL 305
TGR+KGYGF+ F D +A+ ++NG + RPM++ T + AS L
Sbjct: 301 TGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDASSASSFLDNDELER 360
Query: 306 AG-GPGSNGARVQ 317
G G+ G R+Q
Sbjct: 361 TGIDLGTTG-RLQ 372
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 185 (70.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 57/189 (30%), Positives = 90/189 (47%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ + E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF
Sbjct: 475 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEF 530
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + + + RL GS S ++FV L+ D T+
Sbjct: 531 ASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEET 587
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F SV+ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 588 LKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 643
Query: 285 VATPKKASG 293
A PK G
Sbjct: 644 WAKPKGEGG 652
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 185 (70.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 57/189 (30%), Positives = 90/189 (47%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ + E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF
Sbjct: 476 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEF 531
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + + + RL GS S ++FV L+ D T+
Sbjct: 532 ASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEET 588
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F SV+ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 589 LKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 644
Query: 285 VATPKKASG 293
A PK G
Sbjct: 645 WAKPKGEGG 653
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 182 (69.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 50/170 (29%), Positives = 91/170 (53%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
NGS ++ TN + + L M + L + F G++ + K++R+K TGQS GYGFV
Sbjct: 61 NGSEDSKTN-----LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 115
Query: 164 FYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDS 223
+ AEK + + +G L T + ++++A S + R D +++V L +T
Sbjct: 116 YMEPKDAEKAINTLNG-LRLQT-KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQK 168
Query: 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
L++ FS ++ + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 169 ELEQLFS-QFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 130 (50.8 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 188 PFRLNWAT-FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
P ++ T +G + A + IFV +LAPD +++L + F + +V KVI D N
Sbjct: 283 PMTIDGVTSLAGINLPAHAGTGWCIFVYNLAPDADENVLWQMFGP-FGAVTNVKVIRDFN 341
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
T + KG+GFV + +E + A+ +NG R +++ T K
Sbjct: 342 TNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKTNK 384
Score = 112 (44.5 bits), Expect = 0.00075, P = 0.00075
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
S ++ V L ++T L+ F S ++ K++ D TG++ GYGFV + + + +
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEK 124
Query: 267 AMTEMNGVYCSSRPMRIDVATPKKAS 292
A+ +NG+ ++ +++ A P AS
Sbjct: 125 AINTLNGLRLQTKTIKVSYARPSSAS 150
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 185 (70.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 57/189 (30%), Positives = 90/189 (47%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ + E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF
Sbjct: 477 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEF 532
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + + + RL GS S ++FV L+ D T+
Sbjct: 533 ASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEET 589
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F SV+ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 590 LKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 645
Query: 285 VATPKKASG 293
A PK G
Sbjct: 646 WAKPKGEGG 654
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 184 (69.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 47/165 (28%), Positives = 85/165 (51%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T ++++GDL + E L+ FS G ++++++ R+ T S Y +V F AE L
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHAL 69
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ + ++ +P R+ W+ S R++ + IFV +L + + L +T S+ +
Sbjct: 70 DTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFVKNLDKSINNKALYDTVSA-FG 123
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
++ V+ D N G +KGYGFV F RA+ +MNG+ + R
Sbjct: 124 NILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 184 (69.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 55/190 (28%), Positives = 99/190 (52%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSG--SDRRTEACSDLSIFVGDLAPDV 220
+ Q Y G ++ L TF DR T ++++V +L +
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELK-RTFEQMKQDRITRY-QVVNLYVKNLDDGI 305
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P
Sbjct: 306 DDERLRKAFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 281 MRIDVATPKK 290
+ + +A K+
Sbjct: 363 LYVALAQRKE 372
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 43/173 (24%), Positives = 85/173 (49%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNK-----------QTGQSEGYGFVEFYSRAAAEKVLQ 175
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAIN 90
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+ +G + + + ++++A S +E+ D ++++ L +T +++ F +
Sbjct: 91 TLNGLRLQS--KTIKVSFARPS-----SESIKDANLYISGLPRTMTQKDVEDMFLP-FGH 142
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVA 286
+ ++V++D TG ++G F+RF +E A+ NG SS P+ + A
Sbjct: 143 IINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 195
Score = 120 (47.3 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY 253
++ S + + A S IFV +L D + IL + F + +V KVI D NT + KG+
Sbjct: 240 SSISSVNVASSATSGWCIFVYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGF 298
Query: 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
GFV + E + A+ +NG + +++ T K
Sbjct: 299 GFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSK 334
Score = 109 (43.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 22/92 (23%), Positives = 46/92 (50%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + F G ++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 119 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 178
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL 209
+G P + +P + +A ++ S +
Sbjct: 179 NGHKPPGSSEPITVKFAANPNQNKNVALLSQI 210
>TAIR|locus:2100840 [details] [associations]
symbol:AT3G04500 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC022287 eggNOG:NOG306795
HSSP:O08583 HOGENOM:HOG000239273 EMBL:BT005571 EMBL:AK118315
IPI:IPI00527216 RefSeq:NP_187100.1 UniGene:At.40828
ProteinModelPortal:Q9M837 SMR:Q9M837 PaxDb:Q9M837 PRIDE:Q9M837
EnsemblPlants:AT3G04500.1 GeneID:819606 KEGG:ath:AT3G04500
TAIR:At3g04500 InParanoid:Q9M837 OMA:SNWRERT PhylomeDB:Q9M837
ProtClustDB:CLSN2684283 ArrayExpress:Q9M837 Genevestigator:Q9M837
Uniprot:Q9M837
Length = 245
Score = 173 (66.0 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 33/77 (42%), Positives = 51/77 (66%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
+D +F GDL +V D +L + F+ ++P+ AKVI D TG+TKGYGFV F + + +
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFA-RFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAA 193
Query: 267 AMTEMNGVYCSSRPMRI 283
A+ EMNG Y +RP+++
Sbjct: 194 ALKEMNGKYVGNRPIKL 210
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 180 (68.4 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 55/189 (29%), Positives = 90/189 (47%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N+ + E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF
Sbjct: 129 GGKNSTWSGESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEF 184
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
S A++ L S + + + RL GS S ++FV L+ + T+
Sbjct: 185 ASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEETTEET 241
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L+E+F S++ A+++ D TG +KG+GFV F E + A M + +D
Sbjct: 242 LKESFDG---SIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 297
Query: 285 VATPKKASG 293
A PK G
Sbjct: 298 WAKPKGEGG 306
Score = 121 (47.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 35/152 (23%), Positives = 67/152 (44%)
Query: 143 VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT-----FS 197
V ++++ + G+S+G ++EF + A AEK L+ G+ + F
Sbjct: 71 VEIRLV--SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFR 128
Query: 198 GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257
G T + ++ + +LA T+ LQE F K +K + + G++KGY F+
Sbjct: 129 GGKNSTWSGESKTLVLSNLAYSATEETLQEVFE-KATFIK----VPQNQNGKSKGYAFIE 183
Query: 258 FGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
F + A+ N R +R+++ P+
Sbjct: 184 FASFEDAKEALNSCNKREIEGRAIRLELQGPR 215
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 180 (68.4 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 52/209 (24%), Positives = 101/209 (48%)
Query: 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL----QSYSG-SLMPNTD 186
L FS G+V +V++I ++ + +S+G +VEF ++ + Q G ++
Sbjct: 12 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQAS 71
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
Q + N A ++ + + + ++VG L ++T+ +L+ F + ++ ++++DS
Sbjct: 72 QAEK-NRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSE 129
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK-ASGXXXXXXXXALVL 305
TGR+KGYGF+ F D +A+ ++NG + RPM++ T + AS L
Sbjct: 130 TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELER 189
Query: 306 AG-GPGSNGARVQGSQSDGESNNATVSPS 333
G G+ G R+Q E + P+
Sbjct: 190 TGIDLGTTG-RLQLMARLAEGTGLQIPPA 217
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 181 (68.8 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 48/176 (27%), Positives = 89/176 (50%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + L + F+ G+V KVIR+ QT +S+GYGFV F ++ AE +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACS-----------DLSIFVGDLAPDVTDSILQ 226
+G + + R NWA S+ + + + S++VG+++ TD+ L+
Sbjct: 287 NGKWIGK--RAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLR 344
Query: 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
+ FS+ Y + ++ +T+ Y FVR+ + ++A+ EMNG + +R
Sbjct: 345 DLFST-YGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVR 393
Score = 159 (61.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 200 DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259
+ R + +FVGDL+ DV++ +L+ TF+ K+ V AKVI D T ++KGYGFV F
Sbjct: 216 EMRIDTSKHFHVFVGDLSKDVSNELLKSTFT-KFGEVSEAKVIRDVQTQKSKGYGFVSFP 274
Query: 260 DENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
++ A+ MNG + R +R + A K +
Sbjct: 275 NKQNAENAIAGMNGKWIGKRAVRTNWAARKNS 306
>UNIPROTKB|F1MN26 [details] [associations]
symbol:F1MN26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 EMBL:DAAA02057528
IPI:IPI00686039 Ensembl:ENSBTAT00000013961 OMA:ITVSHAF
Uniprot:F1MN26
Length = 398
Score = 180 (68.4 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 53/204 (25%), Positives = 98/204 (48%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAE 171
++ +++G + E L F G VVN + ++ T GQ +GYGFVEF S A+
Sbjct: 10 NQDAAVYVGGPDEKVREPLLWELFLQAGLVVNTNMAKDSVTVGQHQGYGFVEFLSGKNAD 69
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
++ + ++ +P R+N A S ++ + ++ IF+G+L P + +L +TFS+
Sbjct: 70 YAIKIMN--MIKRYGKPTRVNKA--SAHSKKLDVGAN--IFIGNLDPQI-GKLLYDTFST 122
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
++ +++ + +TG +KGY F+ F + A+ MN Y + + + A K +
Sbjct: 123 FGVILQTPRIMRNPDTGNSKGYAFIHFVSCDVVDAAIKAMNRQYLCNHLITVSHAFKKDS 182
Query: 292 SGXXXXXXXXALVLAGGPGSNGAR 315
G L+ A P S R
Sbjct: 183 KGERHGSGTEQLLAAQNPLSQADR 206
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 171 (65.3 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 44/168 (26%), Positives = 87/168 (51%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-- 88
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A S +E D ++++ L +T +++ F + + ++V++D
Sbjct: 89 KTIKVSFARPS-----SETIKDANLYISGLPRTMTQKDVEDMFLP-FGHIINSRVLVDQA 142
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRID-VATPKKA 291
TG ++G F+RF +E A+ NG SS P+ + A P ++
Sbjct: 143 TGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQS 190
Score = 119 (46.9 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY 253
++ S + + A S IF+ +L D + IL + F + +V KVI D NT + KG+
Sbjct: 229 SSISSVNVASSASSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGF 287
Query: 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
GFV + E + A+ +NG + +++ T K
Sbjct: 288 GFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSK 323
Score = 107 (42.7 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L M + + + F G ++N +V+ ++ TG S G F+ F R+ AE+ + S+
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 178 SGSLMPNTDQPFRLNWA 194
+G P + +P + +A
Sbjct: 168 NGHKPPGSSEPITVKFA 184
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 182 (69.1 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 50/174 (28%), Positives = 93/174 (53%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ + + G S+GYGFV F ++ AAE+ ++
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L+E F P+
Sbjct: 95 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 153
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ KV+ D + G++KG+GFV F + +A+ EMNG + + + + A K
Sbjct: 154 LS-VKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 205
Score = 180 (68.4 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 51/188 (27%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 125 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 183
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 184 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 243
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 244 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 300
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 301 VALAQRKE 308
Score = 123 (48.4 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 33/110 (30%), Positives = 60/110 (54%)
Query: 170 AEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
AE+ L + + ++ +P R+ W+ S R++ + IF+ +L + + L +TF
Sbjct: 1 AERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTF 55
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
S+ + ++ KV+ D N G +KGYGFV F + RA+ +MNG+ + R
Sbjct: 56 SA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 102
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 173 (66.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 48/177 (27%), Positives = 88/177 (49%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
TK ++ G+L + +D L V+V+ N+ TGQS G+ FV + ++
Sbjct: 85 TK-LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRT-EACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+ G+ + ++N+A ++ ++ +FVG+L+ VT L F +
Sbjct: 144 DNLDGT--EYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFR-EC 200
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
V GA+V+ D +TGR++GYGFV + + E A+ ++G R +R+++A KK
Sbjct: 201 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 176 (67.0 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 55/180 (30%), Positives = 86/180 (47%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF S A++
Sbjct: 109 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEA 164
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
L S + + + RL GS S ++FV L+ D T+ L+E+F
Sbjct: 165 LNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFDG-- 219
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
SV+ A+++ D TG +KG+GFV F E + A M + +D A PK G
Sbjct: 220 -SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 277
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 180 (68.4 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 51/188 (27%), Positives = 94/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 21 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 79
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 80 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 139
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 140 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 196
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 197 VALAQRKE 204
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 181 (68.8 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 144 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 202
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 203 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 262
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 263 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 319
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 320 VALAQRKE 327
Score = 179 (68.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 49/174 (28%), Positives = 93/174 (53%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ + + G S+GYGFV F ++ AAE+ ++
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 113
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L++ F P+
Sbjct: 114 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 172
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ KV+ D + G++KG+GFV F + +A+ EMNG + + + + A K
Sbjct: 173 LS-VKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 224
Score = 153 (58.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 40/127 (31%), Positives = 69/127 (54%)
Query: 153 TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIF 212
T +S GY +V F A AE+ L + + ++ +P R+ W+ S R++ + IF
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IF 57
Query: 213 VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
+ +L + + L +TFS+ + ++ KV+ D N G +KGYGFV F + RA+ +MN
Sbjct: 58 IKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMN 114
Query: 273 GVYCSSR 279
G+ + R
Sbjct: 115 GMLLNDR 121
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 181 (68.8 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 51/188 (27%), Positives = 95/188 (50%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 215
Query: 174 L-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTD 222
+ Q Y G ++ L R ++++V +L + D
Sbjct: 216 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 275
Query: 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+
Sbjct: 276 ERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 332
Query: 283 IDVATPKK 290
+ +A K+
Sbjct: 333 VALAQRKE 340
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 38/136 (27%), Positives = 71/136 (52%)
Query: 156 SEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFV 213
S+GYGFV F ++ AAE+ ++ +G L+ N + F R ++ A ++++
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYI 163
Query: 214 GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+ D+ D L++ F P++ KV+ D + G++KG+GFV F + +A+ EMNG
Sbjct: 164 KNFGEDMDDERLKDLFGKFGPALS-VKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNG 221
Query: 274 VYCSSRPMRIDVATPK 289
+ + + + A K
Sbjct: 222 KELNGKQIYVGRAQKK 237
Score = 127 (49.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
Score = 114 (45.2 bits), Expect = 0.00085, P = 0.00085
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSD 208
+ ++ +P R+ W+ S R++ D
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVVCD 101
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 177 (67.4 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 44/173 (25%), Positives = 94/173 (54%)
Query: 104 NGSNNNFTND--ETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYG 160
NG ++ ++ ++KT + + L M + L + FS G+V + K+IR+K G S GYG
Sbjct: 19 NGYEDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 78
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
FV + + AE+ + + +G + + + ++++A S +++ D ++++ L +
Sbjct: 79 FVNYLNPNDAERAISTLNGLRLQS--KTIKVSYARPS-----SDSIKDANLYISGLPKTM 131
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
T ++E F +Y + ++V++D +G ++G F+RF E A+ ++NG
Sbjct: 132 TQKDVEEMFG-RYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
S ++ V L +++ L+ FSS V+ AK+I D G + GYGFV + + N+ R
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAER 90
Query: 267 AMTEMNGVYCSSRPMRIDVATPKKAS 292
A++ +NG+ S+ +++ A P S
Sbjct: 91 AISTLNGLRLQSKTIKVSYARPSSDS 116
Score = 112 (44.5 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG + + S IF+ +L D + IL + F + +V KVI D NT + KG+GFV
Sbjct: 246 SGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFV 304
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
E + A+ +NG + +++ T K
Sbjct: 305 TMTHYEEAAMAIASLNGYRLGDKILQVSFKTSK 337
Score = 95 (38.5 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 111 TNDETK--TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
++D K ++I L M + + F G+++N +V+ ++ +G S G F+ F RA
Sbjct: 113 SSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRA 172
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTE 204
AE ++ +G P + + +A + T+
Sbjct: 173 EAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNTQ 208
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 171 (65.3 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
DE +++G L + L F G +++ V++N ++G+S G+GFV F
Sbjct: 4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNH 63
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
VLQ+ +L T P N T ++ + +F+G L +VT++ L+ TF ++
Sbjct: 64 VLQNGPHTLDGRTIDPKPCNPRTL----QKPKKGGGYKVFLGGLPSNVTETDLR-TFFNR 118
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
Y V ++ D +++G+GF+ F +E+ E + + + + I A P+ S
Sbjct: 119 YGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERY-INLNGKQVEIKKAEPRDGS 177
Query: 293 G 293
G
Sbjct: 178 G 178
Score = 43 (20.2 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 288 PKKASGXXXXXXXXALVLA-GGPGSNGARVQGSQSDGESNNATVSPS 333
P +G A A GGP + G V G G N+A+ S S
Sbjct: 325 PGAGAGTATDMYSRAQAWATGGPSTTGP-VGGMPRTGPGNSASKSGS 370
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 180 (68.4 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 47/189 (24%), Positives = 96/189 (50%)
Query: 108 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+N T +E +T++ L + L FS G+V +V++I ++ + +S+G ++EF
Sbjct: 139 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFV 198
Query: 166 SRAAAEKVLQSYSGSLM---PNTDQPFRL--NWATFSGSDRRTEACSDLSIFVGDLAPDV 220
+ + SG + P Q + N A ++ + + + ++VG L ++
Sbjct: 199 DSTSVPLAI-GLSGQRLLGVPIIVQASQAEKNRAAALANNLQKGSAGPMRLYVGSLHFNI 257
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ +L+ F + + ++++DS TGR+KGYGF+ F D +A+ ++NG + RP
Sbjct: 258 TEDMLRGIFEP-FGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRP 316
Query: 281 MRIDVATPK 289
M++ T +
Sbjct: 317 MKVGHVTER 325
>ASPGD|ASPL0000013776 [details] [associations]
symbol:AN3953 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001302 EMBL:AACD01000064 eggNOG:NOG306795 OrthoDB:EOG469V4H
RefSeq:XP_661557.1 ProteinModelPortal:Q5B677
EnsemblFungi:CADANIAT00004740 GeneID:2873369 KEGG:ani:AN3953.2
HOGENOM:HOG000215409 OMA:AQIAQWQ Uniprot:Q5B677
Length = 353
Score = 177 (67.4 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 46/118 (38%), Positives = 65/118 (55%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FVG+LA +VTD L + FS KY SV+ A+VI D T ++KGYGFV F D ++ +A E
Sbjct: 229 LFVGNLAGEVTDDSLFKAFS-KYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAARE 287
Query: 271 MNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSN-GARVQ--GSQSDGES 325
M G Y S P+ + AT + GG G N GA+V+ G + G++
Sbjct: 288 MQGKYIGSHPVLLRRATTEVRPVSNTKNNKKNAGKGGGSGGNQGAKVKHDGIKKPGKT 345
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 179 (68.1 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 50/189 (26%), Positives = 93/189 (49%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L+N FS G + K++R+ +TG S GYGFV++ + + +E +Q +G + N
Sbjct: 104 MTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRN-- 161
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A G ++ D +++V +L+ ++ D +L FS Y + ++ D
Sbjct: 162 KRLKVSYARPGG-----QSIKDTNLYVINLSRNINDDMLDRIFSP-YGLIVQRNILRDKL 215
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVATPKKASGXXXXXXXXALV 304
TGR +G FVR+ E A+ +N S+P+ + +A + G A +
Sbjct: 216 TGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLA---EEHGKAKAAQFMAQI 272
Query: 305 LAGGPGSNG 313
GG G G
Sbjct: 273 -GGGNGGGG 280
Score = 116 (45.9 bits), Expect = 0.00037, P = 0.00037
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 201 RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260
++ + S ++ + L D+TD L FS P + K++ D TG + GYGFV +
Sbjct: 85 QQVDRTSATNLIINYLPQDMTDRELYNLFSGCGP-INTCKIMRDFKTGYSFGYGFVDYKT 143
Query: 261 ENERSRAMTEMNGVYCSSRPMRIDVATP 288
E++ A+ ++NG Y ++ +++ A P
Sbjct: 144 ESDSEDAIQKLNGFYVRNKRLKVSYARP 171
WARNING: HSPs involving 629 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 349 258 0.00087 114 3 11 23 0.37 34
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 879
No. of states in DFA: 609 (65 KB)
Total size of DFA: 207 KB (2115 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.03u 0.22s 20.25t Elapsed: 00:00:01
Total cpu time: 20.07u 0.22s 20.29t Elapsed: 00:00:01
Start: Fri May 10 11:27:16 2013 End: Fri May 10 11:27:17 2013
WARNINGS ISSUED: 2