BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018927
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/291 (66%), Positives = 232/291 (79%), Gaps = 12/291 (4%)
Query: 45 WMAMMQYP-AAAMAMMQQQQMMMYPHHYMPYGGGGHPYYQNGGGVKQQQQQQHG---LSN 100
WMA MQYP AAAM MMQQQQM+MYPH Y+PY G PY Q+ Q Q+G
Sbjct: 40 WMAAMQYPPAAAMMMMQQQQMLMYPHQYVPYNQG--PYQQH-----HPQLHQYGSYQQHQ 92
Query: 101 GKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYG 160
+Q+ + + + D+ KT+W+GDL HWMDET+LH+CFSHTG+V +VKVIRNK T QSEGYG
Sbjct: 93 HQQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYG 152
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS-GSDRRTEACSDLSIFVGDLAPD 219
FVEF SRAAAE+VLQ+YSGS+MPN+DQPFR+NWA+FS G R E DLS+FVGDL+PD
Sbjct: 153 FVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPD 212
Query: 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
VTD +L ETFS +YPSVK AKV+IDSNTGR+KGYGFVRFGDENERSRA+TEMNG YCS+R
Sbjct: 213 VTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNR 272
Query: 280 PMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATV 330
MR+ +ATPK+A QQQ+SSQA++LAGG GSNG+ GSQSDGES NAT+
Sbjct: 273 QMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATI 323
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 39/196 (19%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++++GDL + + LH FS V + KV+ + TG+S+GYGFV F + L
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 176 SYSGSLMPNTDQPFRLNWATFS----------------------------GSDRRTEACS 207
+G+ N + R+ AT GS E+ +
Sbjct: 263 EMNGAYCSN--RQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES-T 319
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
+ +IFVG + PDV D L++ FS ++ V K+ + KG GFV+F D A
Sbjct: 320 NATIFVGGIDPDVIDEDLRQPFS-QFGEVVSVKIPVG------KGCGFVQFADRKSAEDA 372
Query: 268 MTEMNGVYCSSRPMRI 283
+ +NG +R+
Sbjct: 373 IESLNGTVIGKNTVRL 388
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
TI++G + + + L FS G+VV+VK+ K G GFV+F R +AE ++S
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK------GCGFVQFADRKSAEDAIES 375
Query: 177 YSGSLM-PNTDQPFRLNW 193
+G+++ NT RL+W
Sbjct: 376 LNGTVIGKNT---VRLSW 390
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 336 bits (862), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 154/220 (70%), Positives = 192/220 (87%), Gaps = 1/220 (0%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
++++ KTIWIGDL WMDE++LH+CFS G+V++VK+IRNKQTGQSE YGFVEF + AAA
Sbjct: 79 SSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAA 138
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EKVLQSY+G++MPNT+QPFRLNWA FS ++R E SD SIFVGDLA DVTD++L++TF+
Sbjct: 139 EKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFA 198
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
S+YPS+KGAKV++D+NTG +KGYGFVRFGDE+ERSRAMTEMNGVYCSSR MRI VATPKK
Sbjct: 199 SRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKK 258
Query: 291 ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATV 330
S + +QYSSQA++L+GG SNGA GSQSDG+S+N T+
Sbjct: 259 PSAH-EQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTI 297
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 32/192 (16%)
Query: 117 TIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + +T L + F S + KV+ + TG S+GYGFV F + + +
Sbjct: 178 SIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMT 237
Query: 176 SYSGSL--------------MPNTDQPFRLNWATFSGSDRRTEAC----------SDLSI 211
+G P+ + + SG A S+ +I
Sbjct: 238 EMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTI 297
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
FVG L +VTD L+++F+ ++ V K+ KG GFV+F D + A+ ++
Sbjct: 298 FVGGLDSEVTDEELRQSFN-QFGEVVSVKIPAG------KGCGFVQFSDRSSAQEAIQKL 350
Query: 272 NGVYCSSRPMRI 283
+G + +R+
Sbjct: 351 SGAIIGKQAVRL 362
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 99 SNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEG 158
SNG + + + TI++G L + + L F+ G+VV+VK+ K G
Sbjct: 278 SNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGK------G 331
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193
GFV+F R++A++ +Q SG+++ Q RL+W
Sbjct: 332 CGFVQFSDRSSAQEAIQKLSGAIIGK--QAVRLSW 364
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 331 bits (849), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 157/219 (71%), Positives = 183/219 (83%), Gaps = 6/219 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
D+ KT+W+GDL HWMDET+LH CFSHT +V +VKVIRNKQT QSEGYGFVEF SR+AAE+
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFS-GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
LQS+SG MPN +QPFRLNWA+FS G R +E DLSIFVGDLAPDV+D++L ETF+
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
+YPSVKGAKV+IDSNTGR+KGYGFVRFGDENERSRAMTEMNG +CSSR MR+ +ATPK+A
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 292 SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATV 330
+ Y QQ SQAL LAGG G N GS SDGESNN+T+
Sbjct: 296 AAYGQQNGSQALTLAGGHGGN-----GSMSDGESNNSTI 329
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 32/190 (16%)
Query: 117 TIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + + L F+ V KV+ + TG+S+GYGFV F + +
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 176 SYSGSLMPNTDQPFRLNWATF---------SGSDRRTEA-------------CSDLSIFV 213
+G+ + + R+ AT +GS T A ++ +IFV
Sbjct: 274 EMNGAFC--SSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFV 331
Query: 214 GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
G L DVT+ L + FS + V K+ + KG GFV+F + A+ +NG
Sbjct: 332 GGLDADVTEEDLMQPFS-DFGEVVSVKIPVG------KGCGFVQFANRQSAEEAIGNLNG 384
Query: 274 VYCSSRPMRI 283
+R+
Sbjct: 385 TVIGKNTVRL 394
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 91 QQQQQHGLSNGKQNGSNNNFTNDETK--TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI 148
QQ L+ +G N + ++ E+ TI++G L + E L FS G+VV+VK+
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 149 RNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM-PNTDQPFRLNW 193
K G GFV+F +R +AE+ + + +G+++ NT RL+W
Sbjct: 360 VGK------GCGFVQFANRQSAEEAIGNLNGTVIGKNT---VRLSW 396
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 281 bits (718), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 146/274 (53%), Positives = 181/274 (66%), Gaps = 34/274 (12%)
Query: 27 SQPTPQQPYHWVPPHQQQWMAMMQYPAAAMAMMQQQQMMMYPHHYMPYGGGGHPYYQNGG 86
+ PTP P HW M+YP + QMM P + PY
Sbjct: 43 TSPTP--PPHW-----------MRYPPTVII---PHQMMYAPPPFPPY------------ 74
Query: 87 GVKQQQQQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFS--HTGQVVN 144
Q H L + + + N N E KTIW+GDL HWMDE +L++ F+ ++V+
Sbjct: 75 ---HQYPNHHHLHHQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVS 131
Query: 145 VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTE 204
VKVIRNK G SEGYGFVEF S A+KVL+ ++G+ MPNTDQPFRLNWA+FS ++R E
Sbjct: 132 VKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLE 191
Query: 205 AC-SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263
DLSIFVGDL+PDV+D++L ETFS KYPSVK AKV++D+NTGR+KGYGFVRFGDENE
Sbjct: 192 NNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENE 251
Query: 264 RSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ 297
R++AMTEMNGV CSSR MRI ATP+K +GYQQQ
Sbjct: 252 RTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ 285
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 25/183 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + + LH FS V KV+ + TG+S+GYGFV F K +
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 176 SYSGSLMPNTDQPFRLNWATF--------------SGSDRRTEA-CSDLSIFVGDLAPDV 220
+G + + + R+ AT +G+ R E + +IFVG L V
Sbjct: 258 EMNG--VKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
TD L++ F+ ++ + K+ + KG GFV+F + A+ ++NG +
Sbjct: 316 TDEDLKQPFN-EFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 281 MRI 283
+R+
Sbjct: 369 VRL 371
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 273 bits (698), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/216 (59%), Positives = 166/216 (76%), Gaps = 1/216 (0%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T +E +T+WIGDL +W+DE +L +CFS TG++V+VKVIRNK TGQ EGYGF+EF S AAA
Sbjct: 19 TLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAA 78
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
E+ LQ+Y+G+ MP T+ FRLNWA+F GS ++ +A D SIFVGDLAPDVTD +LQETF
Sbjct: 79 ERTLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
Y SV+GAKV+ D +TGR+KGYGFV+F +E+ER+RAM EMNG+YCS+RPMRI ATPKK
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
Query: 291 ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESN 326
G QQQY ++A+ P + A VQ + ES+
Sbjct: 198 NVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESD 233
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 43/199 (21%)
Query: 117 TIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + + L F H V KV+ + TG+S+GYGFV+F + + +
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 176 SYSGSLMPNTDQPFRLNWAT-------------------------------FSGSDRRTE 204
+G + + +P R++ AT +
Sbjct: 177 EMNG--LYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDV 234
Query: 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264
C+ +S V +L +VT+ L++ FS +I TKGYG+V+F
Sbjct: 235 TCTTIS--VANLDQNVTEEELKKAFSQ-------LGEVIYVKIPATKGYGYVQFKTRPSA 285
Query: 265 SRAMTEMNGVYCSSRPMRI 283
A+ M G + +RI
Sbjct: 286 EEAVQRMQGQVIGQQAVRI 304
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
TI + +L + E L FS G+V+ VK+ K GYG+V+F +R +AE+ +Q
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKIPATK------GYGYVQFKTRPSAEEAVQR 291
Query: 177 YSGSLMPNTDQPFRLNWATFSGSD 200
G ++ Q R++W+ G D
Sbjct: 292 MQGQVI--GQQAVRISWSKNPGQD 313
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/244 (56%), Positives = 176/244 (72%), Gaps = 15/244 (6%)
Query: 90 QQQQQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFS--HTGQVVNVKV 147
Q H + + + N N E KTIW+GDL +WMDE +L++ F+ ++V++KV
Sbjct: 77 HQYPNHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKV 136
Query: 148 IRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS 207
IRNK G SEGYGFVEF S A+KVLQ ++G+ MPNTDQPFRLNWA+FS ++R E
Sbjct: 137 IRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNG 196
Query: 208 -DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
DLSIFVGDLAPDV+D++L ETFS KYPSVK AKV++D+NTGR+KGYGFVRFGDENER++
Sbjct: 197 PDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 256
Query: 267 AMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESN 326
AMTEMNGV CSSR MRI ATP+K +GYQQQ GG +GA ++S+G++
Sbjct: 257 AMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ---------GGYMPSGAF---TRSEGDTI 304
Query: 327 NATV 330
N T+
Sbjct: 305 NTTI 308
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 25/183 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + + LH FS V KV+ + TG+S+GYGFV F K +
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 176 SYSGSLMPNTDQPFRLNWATF--------------SGSDRRTEACS-DLSIFVGDLAPDV 220
+G + + + R+ AT SG+ R+E + + +IFVG L V
Sbjct: 260 EMNG--VKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
TD L++ FS ++ + K+ + KG GFV+F + A+ ++NG +
Sbjct: 318 TDEDLKQPFS-EFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 281 MRI 283
+R+
Sbjct: 371 VRL 373
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 256 bits (653), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 160/222 (72%), Gaps = 17/222 (7%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T DE +T+WIGDL +WMDE FL+ CF+HTG++V+ KVIRNKQTGQ EGYGF+EF S AAA
Sbjct: 57 TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 116
Query: 171 EKVLQSYSGSLMPN-TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
E+VLQ+++ + +P+ DQ FRLNWA+ S D+R ++ D +IFVGDLA DVTD IL ETF
Sbjct: 117 ERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETF 175
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ YPSVKGAKV+ID TGRTKGYGFVRF DE+E+ RAMTEMNGV CS+RPMRI A K
Sbjct: 176 RASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
Query: 290 K-ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATV 330
K +G + Y S A G +D + NN TV
Sbjct: 236 KGVTGQRDSYQSSA--------------AGVTTDNDPNNTTV 263
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 30/201 (14%)
Query: 98 LSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQS 156
LS+G + + ++T I++GDL + + L F + V KV+ ++ TG++
Sbjct: 143 LSSGDKRDDSPDYT------IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRT 196
Query: 157 EGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA-----------TFSGSDRRTEA 205
+GYGFV F + + + +G +P + +P R+ A ++ S
Sbjct: 197 KGYGFVRFSDESEQIRAMTEMNG--VPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTT 254
Query: 206 CSD---LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
+D ++FVG L VTD L+ F S+Y + K+ K GFV+F +++
Sbjct: 255 DNDPNNTTVFVGGLDASVTDDHLKNVF-SQYGEIVHVKIPAG------KRCGFVQFSEKS 307
Query: 263 ERSRAMTEMNGVYCSSRPMRI 283
A+ +NGV +R+
Sbjct: 308 CAEEALRMLNGVQLGGTTVRL 328
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++G L + + L N FS G++V+VK+ K+ GFV+F ++ AE+ L+
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCAEEALRM 315
Query: 177 YSGSLMPNTDQPFRLNW 193
+G + T RL+W
Sbjct: 316 LNGVQLGGTT--VRLSW 330
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 166/242 (68%), Gaps = 14/242 (5%)
Query: 89 KQQQQQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI 148
+Q QQQ+G + +E +++WIGDL +WMDE +L CF HTG++V+ KVI
Sbjct: 57 QQPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVI 116
Query: 149 RNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD 208
RNKQTGQSEGYGF+EF S AAAE +LQ+Y+G+LMPN +Q FR+NWA+ +RR ++ ++
Sbjct: 117 RNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDS-AE 175
Query: 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
+IFVGDLA DVTD ILQETF S Y SV+GAKV+ D TGR+KGYGFV+F DE+E+ RAM
Sbjct: 176 HTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAM 235
Query: 269 TEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNA 328
TEMNGV CS+RPMRI A KK G Q+ + Q Q +Q + + NN
Sbjct: 236 TEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQ-------------NPQATQGESDPNNT 282
Query: 329 TV 330
T+
Sbjct: 283 TI 284
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
TI++GDL + + L F V KV+ ++ TG+S+GYGFV+F + + +
Sbjct: 177 TIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMT 236
Query: 176 SYSGSLMPNTDQPFRLNWATFS---GSDRR--------TEACSD---LSIFVGDLAPDVT 221
+G L + +P R+ A G+ ++ T+ SD +IFVG L P V
Sbjct: 237 EMNGVLC--STRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVA 294
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
+ L++ FS Y + K++ K GFV+FG +A++ +NG + +
Sbjct: 295 EEHLRQVFS-PYGELVHVKIVAG------KRCGFVQFGTRASAEQALSSLNGTQLGGQSI 347
Query: 282 RI 283
R+
Sbjct: 348 RL 349
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 234 bits (598), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 146/200 (73%), Gaps = 7/200 (3%)
Query: 93 QQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ 152
Q Q+G+ GS N + + K++WIGDL WMDE ++ + F+ +G+ + KVIRNK
Sbjct: 43 QHQYGI------GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKL 96
Query: 153 TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEA-CSDLSI 211
TGQSEGYGF+EF S + AE+VLQ+Y+G+ MP+T+Q FRLNWA ++R + D +I
Sbjct: 97 TGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTI 156
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
FVGDLAP+VTD +L +TF + Y SVKGAKV++D TGR+KGYGFVRF DENE+ RAMTEM
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEM 216
Query: 272 NGVYCSSRPMRIDVATPKKA 291
NG YCS+RPMRI A K A
Sbjct: 217 NGQYCSTRPMRIGPAANKNA 236
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
TI++GDL + + L + F + G V KV+ ++ TG+S+GYGFV F + +
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 176 SYSGSLMPNTDQPFRLN--------------WATFSGSDRRTEACSDLSIFVGDLAPDVT 221
+G + +P R+ + G++ ++ +IFVG L +VT
Sbjct: 215 EMNGQYC--STRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
D L+ F ++ + K+ K GFV++ ++ A++ +NG + +
Sbjct: 273 DDELKSIFG-QFGELLHVKIPPG------KRCGFVQYANKASAEHALSVLNGTQLGGQSI 325
Query: 282 RI 283
R+
Sbjct: 326 RL 327
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 229 bits (583), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 130/177 (73%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E +++WIGDL WMDE +L N F TG+ KVIRNKQ G SEGYGF+EF + A AE+
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
LQ+Y+G+ MP+++Q FRLNWA +RR + ++FVGDLAPDVTD +L ETF + Y
Sbjct: 138 LQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVY 197
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
SVKGAKV+ D TGR+KGYGFVRF DE+E+ RAMTEMNG YCSSRPMR A KK
Sbjct: 198 SSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
T+++GDL + + L F V KV+ ++ TG+S+GYGFV F + + +
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 176 SYSGSLMPN---------TDQPFRLNWATFSGSDRRTEAC--SDLSIFVGDLAPDVTDSI 224
+G + +P + A++ + + ++ +IFVG + VT+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
L+ F G V + G K GFV++ + +A++ +NG + +R+
Sbjct: 294 LKSVFGQF-----GELVHVKIPAG--KRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 105/179 (58%), Gaps = 4/179 (2%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE--GYGFVEFYSRAAAEK 172
+ T+W+GDL WMD TF+ ++ + VNVKV+R+K + Y FV+F S AAAE+
Sbjct: 84 SDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAER 143
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFS 230
L Y+ +++P F+LNWAT G D SIFVGDL P DS L TF
Sbjct: 144 ALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFR 203
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
S YPS AK+I+D TG ++ YGFVRF E E+ A+ M G C RP+RI VA+PK
Sbjct: 204 SIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 113/264 (42%), Gaps = 59/264 (22%)
Query: 48 MMQYPAAAMAMMQQQQMMMYPHHYMPYGGGGHPYYQ----NGGGVKQQQQQQHGLSNGKQ 103
+Q+ ++A A ++ +M Y + +P G H ++ GGG+ QH
Sbjct: 132 FVQFSSSAAA---ERALMKYNNTMIP---GAHCTFKLNWATGGGI------QH------- 172
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGFV 162
NN + D +I++GDL +++ L F S + K+I + TG S YGFV
Sbjct: 173 ---NNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFV 229
Query: 163 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT-----------------FSGSDRRT-- 203
F S + L G L +P R++ A+ S S+R+
Sbjct: 230 RFSSEKEQQHALMHMQGYLC--QGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQ 287
Query: 204 EACS----DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259
+ CS + ++FVG LA ++++ LQ F + I++ KG GFV++
Sbjct: 288 DLCSMDPLNTTVFVGGLASNLSEKDLQVCF-------QPFGRILNIKIPFGKGCGFVQYS 340
Query: 260 DENERSRAMTEMNGVYCSSRPMRI 283
+++ +A+ M G + +R+
Sbjct: 341 EKSAAEKAINTMQGALVGTSHIRL 364
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++G L + E L CF G+++N+K+ K G GFV++ ++AAEK + +
Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK------GCGFVQYSEKSAAEKAINT 351
Query: 177 YSGSLMPNTDQPFRLNW 193
G+L+ + RL W
Sbjct: 352 MQGALVGTSH--IRLAW 366
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 155 bits (391), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 118/196 (60%), Gaps = 6/196 (3%)
Query: 99 SNGKQNGSNNNFTNDET----KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG 154
S +N SN + DE T+W+G+L W+ E F+ ++ G+ V VK+IRN+ TG
Sbjct: 72 SGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTG 131
Query: 155 QSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG-SDRRTEACSDLSIFV 213
+ GY FVEF S A + S + +P T+ F+LNWA+ G ++ S+ SIFV
Sbjct: 132 MNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFV 190
Query: 214 GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
GDL+P+V + + F+S+Y S K AK++ D T ++GYGFVRF DEN++ A+ EM G
Sbjct: 191 GDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250
Query: 274 VYCSSRPMRIDVATPK 289
C RP+R+ +ATPK
Sbjct: 251 QICGDRPIRVGLATPK 266
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
F + T+++G L ++ E L F + G++V VK+ K G GFV+F +R +
Sbjct: 297 FADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQFVNRQS 350
Query: 170 AEKVLQSYSGSLMPNTDQPFRLNW 193
AE + G + N+ RL+W
Sbjct: 351 AEIAINQLQGYPLGNSR--IRLSW 372
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 118/187 (63%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 118/187 (63%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G + S+P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+ T+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 113/185 (61%), Gaps = 10/185 (5%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ FS G+ VK+I ++ TG S GY FVE A+ ++ +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 176 SYSGSLMPNTDQP--FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+P ++ P F+LN+AT+ +R E + S+FVGDL +V D L + F K+
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKF 123
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRIDVATPK--K 290
PS KGAKV+ D G ++GYGFV+F DENE+ +A+ E N +P+RI +A K K
Sbjct: 124 PSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNK 182
Query: 291 ASGYQ 295
AS Y
Sbjct: 183 ASTYH 187
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 5/175 (2%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+G+L +MDE F+ F+ G+ VV +++IR+K TG++ GYGFVE A E+ L+
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G +P P R + S ++ E+ S S+FV DL PDV D +L E F + S
Sbjct: 63 KVNGKPLPGATPPKRFKLSR-SNYGKQGES-STFSLFVSDLTPDVDDGMLYEFFHYHFSS 120
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMRIDVATPK 289
K+++D+N G +K GFV F E E+ RA+ ++ G + +R+ +A+ +
Sbjct: 121 CCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GYQQQYSSQALVLAGGPGSNGAR 315
G + +++ L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYG 160
K + N N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY
Sbjct: 88 KASAHNKNL--DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
F+ F S A++ +++ +G + N +P +++A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GYQQQYSSQALVLAGGPGSNGAR 315
G + +++ L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYG 160
K + N N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY
Sbjct: 88 KASAHNKNL--DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
F+ F S A++ +++ +G + N +P +++A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GYQQQYSSQALVLAGGPGSNGAR 315
G + +++ L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYG 160
K + N N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY
Sbjct: 88 KASAHNKNL--DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
F+ F S A++ +++ +G + N +P +++A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 109/240 (45%), Gaps = 67/240 (27%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-------------------------N 150
+T+W+GDL DE + +S + V VK+IR N
Sbjct: 34 RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAEN 93
Query: 151 KQTGQSE----------------------------GYGFVEFYSRAAAEKVLQSYSGSLM 182
+Q+ + GY FVEF ++ A+ L S + + +
Sbjct: 94 QQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFAL-SLNATPL 152
Query: 183 PNTDQP-------------FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
PN P FRLNWA+ + + + S+FVGDL+P T++ L F
Sbjct: 153 PNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLF 212
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+++ SVK +V+ D TG ++ +GFVRFGDE+ER RA+ EM+G + R +R+ ATP+
Sbjct: 213 QTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 18/183 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQ----------SEGYGFVEFYS 166
+++GDL D+ + ++ G+ +NV+++ N ++GY FV+F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 167 RAAAEKVLQSYSGSLMPN-TDQPFRLNWATFSGSDRR-----TEACSDLSIFVGDLAPDV 220
A L +G L+PN ++ +LNWAT S S+ ++ ++ SIFVGDLAP+V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+S L E F ++Y S AK++ D TG +KGYGFV+F + +E+ A++EM GV+ + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 281 MRI 283
+++
Sbjct: 235 IKV 237
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGF 161
+Q S N+FT+ T++IG L + E L F G +V VK+ K GF
Sbjct: 299 QQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCC------GF 352
Query: 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193
V++ R +AE + G P + RL+W
Sbjct: 353 VQYVDRLSAEAAIAGMQG--FPIANSRVRLSW 382
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 117 TIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + E+ L F + + K++ ++ TG S+GYGFV+F + + L
Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223
Query: 176 SYSGSLM 182
G +
Sbjct: 224 EMQGVFL 230
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 103/194 (53%), Gaps = 11/194 (5%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
N N +E TI++G L +D+ +L F H G V+ +VI + T +S GYG+V+
Sbjct: 156 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 164 FYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF--SGSDRRTEACSDL------SIFVGD 215
F +++ AEK +Q G + +P + +T +G++ R + D ++F+G+
Sbjct: 216 FENKSYAEKAIQEMQGKEIDG--RPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGN 273
Query: 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275
L+ + + E F +K+ V ++ T + KG+G+V+F + + +A+ + G Y
Sbjct: 274 LSFNADRDAIFELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEY 332
Query: 276 CSSRPMRIDVATPK 289
+RP+R+D ++P+
Sbjct: 333 IDNRPVRLDFSSPR 346
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+IFVG L+ + D L++ F V GA+VI + T R++GYG+V F +++ +A+
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEH-IGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 227
Query: 270 EMNGVYCSSRPMRIDVATPKKA 291
EM G RP+ D++T K A
Sbjct: 228 EMQGKEIDGRPINCDMSTSKPA 249
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+ +++G+L + E L F G + N+K++ +K ++ Y FVE++ A LQ
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+ +G + N ++NWA S +++ + ++FVGDL +V D L+ F +PS
Sbjct: 134 TLNGKQIENN--IVKINWAFQS---QQSSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPS 187
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
V+ D TG ++GYGFV F +++ AM M G + RP+RI+ A +
Sbjct: 188 YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
++D+T +++GDL +D+ L N F ++ V+ + QTG S GYGFV F S+ A
Sbjct: 157 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 216
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWA 194
+ + S G + +P R+NWA
Sbjct: 217 QNAMDSMQGQDL--NGRPLRINWA 238
Score = 38.9 bits (89), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265
SD ++VG+L +T+ IL++ F P + K++ID N + Y FV + ++ +
Sbjct: 72 TSDRVLYVGNLDKAITEDILKQYFQVGGP-IANIKIMIDKNN-KNVNYAFVEYHQSHDAN 129
Query: 266 RAMTEMNGVYCSSRPMRIDVA 286
A+ +NG + ++I+ A
Sbjct: 130 IALQTLNGKQIENNIVKINWA 150
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1
Length = 392
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS +YPS AKVI D TG+TKGYGFV F D N+ RA
Sbjct: 292 DFRIFCGDLGNEVNDDILARAFS-RYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 351 MREMNGKYVGSRPIKL 366
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF-----YSRAAAE 171
I+ GDL + +++ L FS + KVIR+K+TG+++GYGFV F Y RA E
Sbjct: 295 IFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMRE 353
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS +YPS AKV+ D TG+TKGYGFV F D N+ RA
Sbjct: 302 DFRIFCGDLGNEVNDDILARAFS-RYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRA 360
Query: 268 MTEMNGVYCSSRPMRI 283
M EMNG Y SRP+++
Sbjct: 361 MREMNGRYVGSRPIKL 376
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF-----YSRAAAE 171
I+ GDL + +++ L FS + KV+R+K+TG+++GYGFV F Y RA E
Sbjct: 305 IFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMRE 363
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGRPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN ++I + M++ L F G ++VKV+ + G+S+G+GFV F
Sbjct: 190 FTN-----VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHED 243
Query: 170 AEKVLQSYSGSLM-----------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
A+K + +G M ++ L R ++++V +L
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+ D L++ F + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG ++
Sbjct: 304 GIDDERLRKEFLP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 279 RPMRIDVATPKK 290
+P+ + +A K+
Sbjct: 361 KPLYVALAQRKE 372
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN RP+RI
Sbjct: 71 TMNFDVIKGRPVRI 84
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 104/197 (52%), Gaps = 6/197 (3%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ TI++G L + E+ L G VV+V + +++ T +G+GFVEF A+
Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P ++N A S ++ + ++ IFVG+L P+V + +L +TFS+
Sbjct: 70 AIKILN--MIKLYGKPIKVNKA--SAHEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D ++G +KG+ F+ F A+ MNG + +R + + A + +
Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSK 183
Query: 293 GYQQQYSSQALVLAGGP 309
G + +++ ++ A P
Sbjct: 184 GERHGTAAERMLAAQNP 200
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
E D +I+VG L V++SIL E P V + D T +G+GFV F E
Sbjct: 7 VERNQDATIYVGGLDEKVSESILWELMVQAGPVVS-VNMPKDRVTANHQGFGFVEFMGEE 65
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAG 307
+ A+ +N + +P++++ KAS +++ A + G
Sbjct: 66 DADYAIKILNMIKLYGKPIKVN-----KASAHEKNMDVGANIFVG 105
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 94/163 (57%), Gaps = 7/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + ++ L + F G VV V+V R+ T +S GYG+V F + A + +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +P +P R+ ++ S RR+ A +IF+ +L + L +TFSS + ++
Sbjct: 97 L--NYIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNI 150
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV +DS +G++KGYGFV++ +E +A+ ++NG+ + +
Sbjct: 151 VSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDK 192
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
+ FTN +++ +L + L N F G++ + V+++ + G+S+G+GFV F
Sbjct: 210 NKTKFTN-----VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFE 263
Query: 166 SRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEA----------CSDL----SI 211
+ A + ++S +G D+ + + A S+R TE +D ++
Sbjct: 264 NADDAARAVESLNGHKF--DDKEWYVGRAQ-KKSERETELRVRYEQNLKEAADKFQSSNL 320
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
+V +L P ++D L+E FS + +V +KV+ D N G +KG GFV F E + AM+++
Sbjct: 321 YVKNLDPSISDEKLKEIFSP-FGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQL 378
Query: 272 NGVYCSSRPMRIDVATPKK 290
+G S+P+ + +A K+
Sbjct: 379 SGKMIESKPLYVAIAQRKE 397
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L F G ++VKV+ + G+S G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERH 241
Query: 168 AAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + + G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ F+ + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFTP-FGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+T+++G+L + E + FS G + K+I + ++ Y FVEFY A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+ +G + + ++NWAT + S ++ + + +FVGDL+P++T ++ F+ +
Sbjct: 67 AMNGRKILGKE--VKVNWAT-TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP-FGK 122
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ A+V+ D TG++KGYGFV F ++ + A+ M G + R +R + AT K
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC-----------SDLSIFVGDLAPDV 220
G + + R NWAT S + T+ + +++ G +A +
Sbjct: 159 GGQWLGG--RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 217 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT 263
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PD T+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRI 283
MN +P+RI
Sbjct: 71 TMNFDVIKGKPVRI 84
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 15/184 (8%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVTDSIL 225
+ +G + + ++NWAT S ++ + S + +FVGDL+P++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
+ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R +
Sbjct: 123 KAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 286 ATPK 289
AT K
Sbjct: 182 ATRK 185
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 36/208 (17%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRT-----------------EACSDLSIFVGDLAPDV 220
G + + R NWAT ++ + S+ +++ G + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG------- 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 274 VYCSSRPMRIDVATP---KKASGYQQQY 298
V C +D+ P + GY Q Y
Sbjct: 279 VKCYWGKETLDMINPVQQQNQIGYPQPY 306
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1
Length = 392
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D IF GDL +V D IL FS +YPS AKVI D TG+TKGYGFV F D N+ RA
Sbjct: 292 DFRIFCGDLGNEVNDDILARAFS-RYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350
Query: 268 MTEMNGVYCSSRPMRI 283
EMNG Y SRP+++
Sbjct: 351 TREMNGKYVGSRPIKL 366
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF-----YSRAAAE 171
I+ GDL + +++ L FS + KVIR+K+TG+++GYGFV F Y RA E
Sbjct: 295 IFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATRE 353
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 15/188 (7%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVT 221
L + +G + + ++NWAT S ++ + S + +FVGDL+P++T
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +
Sbjct: 119 TEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 282 RIDVATPK 289
R + AT K
Sbjct: 178 RTNWATRK 185
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEACS-----------DLSIFVGDLAPDV 220
G + + R NWAT S + T+ S + +++ G + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNGT 272
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++
Sbjct: 372 ADDFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 430
Query: 266 RAMTEMNGVYCSSRPMRI 283
RAM EMNG Y SRP+++
Sbjct: 431 RAMREMNGKYVGSRPIKL 448
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF-----YSRAAAE 171
I+ GDL + +++ L FS + KVIR+K+TG+++GYGFV F Y RA E
Sbjct: 377 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 435
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++
Sbjct: 372 ADDFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 430
Query: 266 RAMTEMNGVYCSSRPMRI 283
RAM EMNG Y SRP+++
Sbjct: 431 RAMREMNGKYVGSRPIKL 448
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF-----YSRAAAE 171
I+ GDL + +++ L FS + KVIR+K+TG+++GYGFV F Y RA E
Sbjct: 377 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 435
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1
Length = 480
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++
Sbjct: 378 ADDFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 436
Query: 266 RAMTEMNGVYCSSRPMRI 283
RAM EMNG Y SRP+++
Sbjct: 437 RAMREMNGKYVGSRPIKL 454
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF-----YSRAAAE 171
I+ GDL + +++ L FS + KVIR+K+TG+++GYGFV F Y RA E
Sbjct: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 441
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265
D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++
Sbjct: 346 ADDFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 404
Query: 266 RAMTEMNGVYCSSRPMRI 283
RAM EMNG Y SRP+++
Sbjct: 405 RAMREMNGKYVGSRPIKL 422
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF-----YSRAAAE 171
I+ GDL + +++ L FS + KVIR+K+TG+++GYGFV F Y RA E
Sbjct: 351 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 409
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E +++G+L + +D L F G V +VI N++T +S G+GFV + AEK
Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 112
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDRRT---EACSDLSIFVGDLAPDVTDSILQETFS 230
++ +G M + +N A GS R + ++VG+L DV S L++ FS
Sbjct: 113 VELLNGYDMDG--RQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFS 170
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT--P 288
++ V A+V+ D TGR++G+GFV E+E + A+ ++G R +R++VA P
Sbjct: 171 -EHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 229
Query: 289 KKA 291
++A
Sbjct: 230 RRA 232
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 96/176 (54%), Gaps = 7/176 (3%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
+ ++++G+L + E L FS G V +++V R+ T +S GY +V + + A EK L
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ + +L+ +P R+ W+ + R+T A +IF+ +L + + L +TF++ +
Sbjct: 119 EELNYTLI--KGRPCRIMWSQRDPALRKTGAG---NIFIKNLDAAIDNKALHDTFAA-FG 172
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
++ KV D + G +KGYGFV + + S+A+ +NG+ + + + + PKK
Sbjct: 173 NILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK 227
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 28/169 (16%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D LH+ F+ G +++ KV +++ G S+GYGFV + + AA + ++
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHV 208
Query: 178 SGSLM-----------PNTDQ--PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
+G L+ P D+ F A F+ +++V ++ +VTD
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT------------NVYVKNINNEVTDEE 256
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+E F+ K+ V + + D G+++G+GFV F ++A+ E+NG
Sbjct: 257 FRELFA-KFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNG 303
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 58/245 (23%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN +++ ++ + + + F+ G+V + + R+ Q G+S G+GFV F +
Sbjct: 239 NFTN-----VYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGFVNFTTHE 292
Query: 169 AAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
AA + + Y G ++ L + + + +++++ +L
Sbjct: 293 AAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLG 352
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDS-------------------------------- 245
DV D L+ FS +Y + AKV+ DS
Sbjct: 353 DDVDDDKLRAMFS-EYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEK 411
Query: 246 --------NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ 297
G++KG+GFV F + ++ ++A+TEMN +P+ + +A K Q +
Sbjct: 412 KTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLE 471
Query: 298 YSSQA 302
S QA
Sbjct: 472 ASIQA 476
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 95/174 (54%), Gaps = 7/174 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++G+L + E L++ FS G + +++V R+ T S GY +V + A +K +Q
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ + + +P R+ W+ + R+ + +IF+ +L P + + L ETFS+ + V
Sbjct: 111 LNYAEI--NGRPCRIMWSERDPAIRKKGSG---NIFIKNLHPAIDNKALHETFST-FGEV 164
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
KV +D N G ++G+GFV F +E++ A+ +NG+ + + + + PKK
Sbjct: 165 LSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKK 217
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN K I + DE F FS G++V+ + ++ + G+ +G+GFV F
Sbjct: 229 NFTNIYVKNIDV----ETTDEEF-EQLFSQYGEIVSAALEKDAE-GKPKGFGFVNFVDHN 282
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL------------------S 210
AA K ++ +G + F+ + ++ E +L +
Sbjct: 283 AAAKAVEELNG-------KEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVN 335
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+ +L + D L+E F+ Y ++ A+V+ D G +KG+GFV F E ++AMTE
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAP-YGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTE 393
Query: 271 MNGVYCSSRPMRIDVATPK 289
N + +P+ + +A K
Sbjct: 394 KNQQIVAGKPLYVAIAQRK 412
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2
Length = 335
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 6/181 (3%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ TI++G+L + ++ L G VVN+ + R++ G+GF EF E
Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
Q + + +P R+N A+ DR ++FVG+L P V + +L +TFS+
Sbjct: 68 ACQILNQVKL--FGKPIRVNRAS---QDRGVNTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
VK +V D N GR+KGYGFV + A+ MN + ++P+ + A ++
Sbjct: 123 GQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGK 181
Query: 293 G 293
G
Sbjct: 182 G 182
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 202 RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261
R + D +I++G+L VTDSIL E P V + D G+GF F E
Sbjct: 4 REDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVN-IHIPRDRVRNSHNGFGFCEFLHE 62
Query: 262 NERSRAMTEMNGVYCSSRPMRIDVAT 287
+ A +N V +P+R++ A+
Sbjct: 63 QDVEYACQILNQVKLFGKPIRVNRAS 88
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL ++E+ L + FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ L+ N +P R+ W+ S RR+ ++F+ +L + + + +TFS+ + ++
Sbjct: 63 MNFDLVRN--KPIRIMWSQRDPSLRRSGVG---NVFIKNLDRAIDNKAIYDTFSA-FGNI 116
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
KV D G +KGYGFV F E + ++ ++NG+ + + + + P+K
Sbjct: 117 LSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN +++ + D+ L F G++ + KV+ +K+ G+S+G+GFV F + A
Sbjct: 182 FTN-----VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEA 235
Query: 170 AEKVLQSYSGSLM------------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
AE +Q+ +G M ++ L +R E+ ++++V +L
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLD 295
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277
+ D L+ FS Y ++ AKV+ D GR+KG+GFV F +E + A+TE+NG
Sbjct: 296 DTIDDDRLRIAFSP-YGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVG 353
Query: 278 SRPMRIDVATPKK 290
S+P+ + +A K+
Sbjct: 354 SKPLYVALAQRKE 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,620,885
Number of Sequences: 539616
Number of extensions: 6147078
Number of successful extensions: 33753
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 383
Number of HSP's that attempted gapping in prelim test: 29673
Number of HSP's gapped (non-prelim): 3265
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)