Query 018927
Match_columns 349
No_of_seqs 394 out of 2858
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.6E-38 3.5E-43 289.8 28.5 176 110-293 102-279 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 1.3E-34 2.9E-39 242.0 18.8 174 111-293 58-242 (321)
3 TIGR01645 half-pint poly-U bin 100.0 1.4E-34 3.1E-39 277.0 21.3 177 113-292 105-287 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-33 4.4E-38 261.5 23.8 169 114-290 2-172 (352)
5 KOG0144 RNA-binding protein CU 100.0 3.5E-34 7.6E-39 253.6 14.6 179 111-295 30-212 (510)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.7E-33 1.7E-37 257.6 22.6 177 114-291 88-351 (352)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 5.3E-32 1.1E-36 259.0 24.2 170 112-292 55-310 (578)
8 TIGR01628 PABP-1234 polyadenyl 100.0 8.3E-32 1.8E-36 265.1 21.1 167 117-290 2-168 (562)
9 KOG0117 Heterogeneous nuclear 100.0 1.1E-31 2.4E-36 238.8 19.0 172 112-293 80-335 (506)
10 TIGR01622 SF-CC1 splicing fact 100.0 1.5E-30 3.3E-35 250.4 21.2 174 112-289 86-266 (457)
11 KOG0145 RNA-binding protein EL 100.0 5.7E-30 1.2E-34 213.1 15.2 173 111-291 37-211 (360)
12 TIGR01628 PABP-1234 polyadenyl 100.0 1.7E-29 3.6E-34 248.8 20.2 176 113-291 176-366 (562)
13 KOG0131 Splicing factor 3b, su 100.0 3.8E-30 8.3E-35 203.6 12.3 176 111-293 5-181 (203)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.5E-28 1.6E-32 231.7 23.0 163 114-289 1-174 (481)
15 KOG0148 Apoptosis-promoting RN 100.0 4.8E-29 1E-33 208.8 12.6 170 112-335 3-172 (321)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.5E-27 3.2E-32 229.6 24.5 167 114-290 95-352 (481)
17 KOG0145 RNA-binding protein EL 100.0 2.2E-28 4.8E-33 203.7 15.2 176 114-290 126-359 (360)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.3E-27 9.2E-32 229.5 20.5 171 110-290 170-376 (509)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.7E-26 3.8E-31 225.2 20.3 174 112-288 292-501 (509)
20 KOG0127 Nucleolar protein fibr 99.9 2.4E-26 5.1E-31 209.4 16.5 172 115-290 117-379 (678)
21 KOG0127 Nucleolar protein fibr 99.9 2.5E-26 5.4E-31 209.2 16.3 171 116-290 6-197 (678)
22 KOG0109 RNA-binding protein LA 99.9 5.6E-27 1.2E-31 198.3 10.1 150 116-291 3-152 (346)
23 KOG0146 RNA-binding protein ET 99.9 2.6E-26 5.7E-31 192.0 11.7 181 111-293 15-369 (371)
24 KOG0124 Polypyrimidine tract-b 99.9 1.9E-26 4.2E-31 200.5 10.9 174 114-290 112-291 (544)
25 KOG4205 RNA-binding protein mu 99.9 8E-25 1.7E-29 194.0 13.9 175 114-293 5-180 (311)
26 TIGR01622 SF-CC1 splicing fact 99.9 3.7E-24 8E-29 206.1 19.2 168 115-289 186-448 (457)
27 KOG0123 Polyadenylate-binding 99.9 5.2E-24 1.1E-28 195.6 16.2 155 116-292 2-156 (369)
28 KOG0144 RNA-binding protein CU 99.9 6.2E-24 1.4E-28 188.7 11.4 178 113-292 122-507 (510)
29 KOG0110 RNA-binding protein (R 99.9 3.5E-23 7.7E-28 194.5 11.4 174 116-290 516-694 (725)
30 KOG0147 Transcriptional coacti 99.9 1.4E-23 3.1E-28 192.2 8.0 176 111-290 175-359 (549)
31 PLN03134 glycine-rich RNA-bind 99.9 3.6E-21 7.9E-26 154.5 14.4 86 206-292 32-117 (144)
32 TIGR01645 half-pint poly-U bin 99.9 1.5E-20 3.3E-25 180.7 18.1 78 114-193 203-280 (612)
33 KOG0123 Polyadenylate-binding 99.9 5.7E-21 1.2E-25 175.6 13.8 169 118-291 79-248 (369)
34 KOG0105 Alternative splicing f 99.8 8.2E-20 1.8E-24 145.2 15.0 160 113-285 4-186 (241)
35 KOG0147 Transcriptional coacti 99.8 6.1E-19 1.3E-23 162.0 12.1 165 117-289 280-528 (549)
36 KOG4212 RNA-binding protein hn 99.8 3.2E-18 6.9E-23 152.7 16.3 174 111-287 40-292 (608)
37 TIGR01659 sex-lethal sex-letha 99.8 1.4E-18 3.1E-23 158.9 12.9 85 204-289 103-187 (346)
38 KOG4206 Spliceosomal protein s 99.8 8.9E-18 1.9E-22 138.9 15.9 162 115-287 9-220 (221)
39 KOG4211 Splicing factor hnRNP- 99.8 6.6E-18 1.4E-22 153.3 14.8 166 113-287 8-180 (510)
40 PLN03134 glycine-rich RNA-bind 99.8 1.2E-17 2.7E-22 134.0 11.9 84 112-197 31-114 (144)
41 KOG0110 RNA-binding protein (R 99.7 4.7E-17 1E-21 153.7 16.0 170 112-290 382-599 (725)
42 KOG1548 Transcription elongati 99.7 1.8E-16 3.9E-21 138.0 17.8 174 110-291 129-354 (382)
43 TIGR01648 hnRNP-R-Q heterogene 99.7 2.8E-17 6E-22 158.2 13.4 117 166-286 18-135 (578)
44 KOG0106 Alternative splicing f 99.7 5.1E-18 1.1E-22 141.7 6.2 152 116-286 2-168 (216)
45 KOG1457 RNA binding protein (c 99.7 2.9E-16 6.2E-21 128.8 15.6 161 111-276 30-273 (284)
46 KOG0117 Heterogeneous nuclear 99.7 2.2E-16 4.7E-21 141.6 12.4 123 163-288 40-163 (506)
47 KOG0122 Translation initiation 99.7 9.8E-17 2.1E-21 133.4 9.3 82 207-289 188-269 (270)
48 KOG0149 Predicted RNA-binding 99.7 2.9E-17 6.4E-22 136.0 6.2 82 206-289 10-91 (247)
49 PF00076 RRM_1: RNA recognitio 99.7 3E-16 6.5E-21 110.5 9.9 70 211-282 1-70 (70)
50 KOG0122 Translation initiation 99.7 3E-16 6.6E-21 130.5 9.7 86 110-197 184-269 (270)
51 KOG0125 Ataxin 2-binding prote 99.7 1.9E-16 4.1E-21 136.9 8.6 84 205-291 93-176 (376)
52 KOG4207 Predicted splicing fac 99.7 1.6E-16 3.4E-21 128.8 7.7 84 207-291 12-95 (256)
53 KOG4212 RNA-binding protein hn 99.6 4.2E-15 9.1E-20 133.0 15.3 72 209-286 537-608 (608)
54 KOG0120 Splicing factor U2AF, 99.6 1.7E-15 3.6E-20 141.3 12.7 180 109-289 283-492 (500)
55 KOG0149 Predicted RNA-binding 99.6 6.8E-16 1.5E-20 128.0 8.6 81 111-192 8-88 (247)
56 KOG0124 Polypyrimidine tract-b 99.6 3.8E-15 8.3E-20 130.4 13.7 171 114-287 209-533 (544)
57 KOG1190 Polypyrimidine tract-b 99.6 4.4E-15 9.6E-20 131.9 13.9 162 115-288 297-490 (492)
58 PF14259 RRM_6: RNA recognitio 99.6 3.5E-15 7.6E-20 105.1 9.6 70 211-282 1-70 (70)
59 KOG0107 Alternative splicing f 99.6 2.3E-15 5E-20 119.2 9.2 80 207-292 9-88 (195)
60 COG0724 RNA-binding proteins ( 99.6 6.1E-15 1.3E-19 132.1 12.9 151 115-268 115-284 (306)
61 KOG0121 Nuclear cap-binding pr 99.6 1.2E-15 2.6E-20 114.4 6.4 82 206-288 34-115 (153)
62 KOG0121 Nuclear cap-binding pr 99.6 1.4E-15 3E-20 114.1 6.7 83 111-195 32-114 (153)
63 KOG0131 Splicing factor 3b, su 99.6 9.6E-16 2.1E-20 122.1 6.2 80 207-287 8-87 (203)
64 PLN03120 nucleic acid binding 99.6 3.4E-15 7.3E-20 128.2 9.9 78 208-290 4-81 (260)
65 PF00076 RRM_1: RNA recognitio 99.6 3.2E-15 7E-20 105.1 7.6 66 118-184 1-66 (70)
66 KOG0105 Alternative splicing f 99.6 6.3E-15 1.4E-19 117.5 9.9 81 207-291 5-85 (241)
67 KOG0113 U1 small nuclear ribon 99.6 1.2E-14 2.7E-19 124.3 11.2 89 205-294 98-186 (335)
68 KOG1456 Heterogeneous nuclear 99.6 2.5E-13 5.5E-18 119.5 19.6 173 110-289 282-491 (494)
69 KOG0125 Ataxin 2-binding prote 99.6 1E-14 2.2E-19 126.3 9.1 92 107-202 88-179 (376)
70 KOG0111 Cyclophilin-type pepti 99.6 1.8E-15 3.8E-20 123.8 3.9 85 207-292 9-93 (298)
71 KOG0126 Predicted RNA-binding 99.6 3.8E-16 8.3E-21 124.1 -0.3 82 207-289 34-115 (219)
72 PLN03213 repressor of silencin 99.5 1.6E-14 3.5E-19 131.1 9.3 79 206-289 8-88 (759)
73 KOG1190 Polypyrimidine tract-b 99.5 1.2E-13 2.5E-18 122.9 13.8 167 113-290 148-374 (492)
74 KOG0130 RNA-binding protein RB 99.5 1.1E-14 2.4E-19 110.1 6.3 88 205-293 69-156 (170)
75 PLN03121 nucleic acid binding 99.5 5.3E-14 1.2E-18 118.9 9.9 78 207-289 4-81 (243)
76 KOG0107 Alternative splicing f 99.5 3.3E-14 7.1E-19 112.7 7.0 76 113-195 8-83 (195)
77 PF14259 RRM_6: RNA recognitio 99.5 5.1E-14 1.1E-18 99.1 7.4 66 118-184 1-66 (70)
78 PLN03120 nucleic acid binding 99.5 1.9E-13 4.1E-18 117.5 11.9 75 115-195 4-78 (260)
79 KOG0114 Predicted RNA-binding 99.5 9.6E-14 2.1E-18 100.3 8.5 81 206-290 16-96 (124)
80 smart00362 RRM_2 RNA recogniti 99.5 1.4E-13 3.1E-18 96.6 9.3 72 210-284 1-72 (72)
81 KOG0108 mRNA cleavage and poly 99.5 5.2E-14 1.1E-18 130.7 8.4 84 209-293 19-102 (435)
82 KOG0113 U1 small nuclear ribon 99.5 9.5E-14 2.1E-18 118.9 9.2 90 105-194 91-180 (335)
83 KOG1456 Heterogeneous nuclear 99.5 1.2E-12 2.7E-17 115.2 16.3 168 111-290 27-200 (494)
84 smart00360 RRM RNA recognition 99.5 2.1E-13 4.6E-18 95.3 9.0 71 213-284 1-71 (71)
85 KOG1365 RNA-binding protein Fu 99.5 2.8E-13 6E-18 119.6 11.2 170 114-289 160-362 (508)
86 KOG0129 Predicted RNA-binding 99.5 8.2E-13 1.8E-17 121.3 14.4 157 110-270 254-432 (520)
87 KOG0109 RNA-binding protein LA 99.5 7.5E-14 1.6E-18 119.1 6.8 73 209-290 3-75 (346)
88 KOG0126 Predicted RNA-binding 99.5 3.6E-15 7.8E-20 118.7 -1.2 82 112-195 32-113 (219)
89 KOG0226 RNA-binding proteins [ 99.5 2.6E-14 5.7E-19 119.6 3.8 170 117-290 98-271 (290)
90 KOG4207 Predicted splicing fac 99.5 9.2E-14 2E-18 112.9 6.2 85 111-197 9-93 (256)
91 COG0724 RNA-binding proteins ( 99.4 1E-12 2.2E-17 117.6 12.0 80 208-288 115-194 (306)
92 cd00590 RRM RRM (RNA recogniti 99.4 1.8E-12 3.8E-17 91.5 9.9 74 210-285 1-74 (74)
93 smart00361 RRM_1 RNA recogniti 99.4 9.6E-13 2.1E-17 92.4 8.2 62 222-284 2-70 (70)
94 KOG4454 RNA binding protein (R 99.4 5.4E-14 1.2E-18 115.2 1.7 145 112-280 6-154 (267)
95 PLN03121 nucleic acid binding 99.4 9.1E-13 2E-17 111.5 8.9 74 114-193 4-77 (243)
96 KOG0108 mRNA cleavage and poly 99.4 7.9E-13 1.7E-17 122.9 9.0 81 116-198 19-99 (435)
97 KOG0130 RNA-binding protein RB 99.4 4.4E-13 9.5E-18 101.6 5.9 86 112-199 69-154 (170)
98 KOG0120 Splicing factor U2AF, 99.4 8.7E-13 1.9E-17 123.3 9.1 173 112-292 172-372 (500)
99 KOG4211 Splicing factor hnRNP- 99.4 1.5E-11 3.3E-16 112.3 16.6 168 113-288 101-357 (510)
100 KOG0111 Cyclophilin-type pepti 99.4 2.7E-13 5.8E-18 111.2 4.4 84 113-198 8-91 (298)
101 KOG4210 Nuclear localization s 99.4 8.6E-13 1.9E-17 117.3 8.0 178 113-292 86-267 (285)
102 PLN03213 repressor of silencin 99.4 1.5E-12 3.3E-17 118.5 8.8 77 113-195 8-86 (759)
103 smart00362 RRM_2 RNA recogniti 99.4 2.7E-12 5.9E-17 90.0 8.4 65 117-183 1-65 (72)
104 PF13893 RRM_5: RNA recognitio 99.4 3E-12 6.6E-17 85.7 8.0 56 225-286 1-56 (56)
105 smart00360 RRM RNA recognition 99.4 3.3E-12 7.1E-17 89.2 8.1 65 120-184 1-65 (71)
106 KOG0114 Predicted RNA-binding 99.3 1.1E-11 2.3E-16 89.8 8.9 80 110-194 13-92 (124)
107 KOG0415 Predicted peptidyl pro 99.3 4.8E-12 1E-16 110.8 6.3 86 205-291 236-321 (479)
108 cd00590 RRM RRM (RNA recogniti 99.3 2.5E-11 5.4E-16 85.5 8.9 72 117-191 1-72 (74)
109 KOG0128 RNA-binding protein SA 99.2 8.9E-13 1.9E-17 127.3 -0.8 151 113-289 665-815 (881)
110 KOG0132 RNA polymerase II C-te 99.2 2.6E-11 5.6E-16 116.1 7.1 108 114-229 420-527 (894)
111 KOG4205 RNA-binding protein mu 99.2 3.5E-11 7.6E-16 107.4 6.5 85 207-293 5-89 (311)
112 smart00361 RRM_1 RNA recogniti 99.2 1E-10 2.2E-15 82.1 7.0 56 129-184 2-64 (70)
113 KOG0146 RNA-binding protein ET 99.1 8.6E-11 1.9E-15 99.4 6.8 82 110-191 280-361 (371)
114 KOG4208 Nucleolar RNA-binding 99.1 2.5E-10 5.5E-15 93.3 8.1 85 205-289 46-130 (214)
115 KOG4206 Spliceosomal protein s 99.1 1.9E-10 4.2E-15 95.6 7.5 81 207-291 8-92 (221)
116 PF13893 RRM_5: RNA recognitio 99.1 1.9E-10 4.2E-15 76.9 5.7 56 132-194 1-56 (56)
117 KOG0132 RNA polymerase II C-te 99.1 2.9E-10 6.3E-15 109.0 7.4 81 206-293 419-499 (894)
118 KOG0112 Large RNA-binding prot 99.1 1.4E-10 2.9E-15 113.0 4.8 165 110-291 367-533 (975)
119 KOG0415 Predicted peptidyl pro 99.0 2.4E-10 5.2E-15 100.3 5.6 82 112-195 236-317 (479)
120 KOG0116 RasGAP SH3 binding pro 99.0 1.1E-09 2.5E-14 101.4 10.3 82 209-292 289-370 (419)
121 KOG4208 Nucleolar RNA-binding 99.0 8.8E-10 1.9E-14 90.2 7.6 79 112-192 46-125 (214)
122 KOG0153 Predicted RNA-binding 99.0 1.6E-09 3.4E-14 95.2 8.9 81 203-290 223-304 (377)
123 KOG1365 RNA-binding protein Fu 99.0 1.6E-09 3.4E-14 96.2 8.6 173 111-288 56-242 (508)
124 KOG4661 Hsp27-ERE-TATA-binding 98.9 5.6E-09 1.2E-13 97.1 8.6 84 206-290 403-486 (940)
125 KOG0153 Predicted RNA-binding 98.9 5.4E-09 1.2E-13 91.9 7.7 80 110-196 223-302 (377)
126 PF04059 RRM_2: RNA recognitio 98.9 1.5E-08 3.3E-13 74.6 8.7 81 209-289 2-87 (97)
127 KOG0533 RRM motif-containing p 98.9 8.3E-09 1.8E-13 88.7 8.1 84 207-292 82-165 (243)
128 KOG4307 RNA binding protein RB 98.8 1E-08 2.2E-13 97.5 8.5 184 100-289 296-514 (944)
129 KOG4307 RNA binding protein RB 98.8 3.6E-08 7.8E-13 93.8 11.9 75 210-285 869-943 (944)
130 KOG1457 RNA binding protein (c 98.8 2.7E-08 6E-13 82.3 9.6 88 206-294 32-123 (284)
131 PF04059 RRM_2: RNA recognitio 98.8 2.9E-08 6.3E-13 73.2 8.7 80 116-195 2-85 (97)
132 KOG0106 Alternative splicing f 98.8 8.4E-09 1.8E-13 86.7 6.6 74 210-292 3-76 (216)
133 KOG2193 IGF-II mRNA-binding pr 98.8 9.3E-10 2E-14 98.7 0.9 156 116-291 2-159 (584)
134 KOG4660 Protein Mei2, essentia 98.8 8.2E-09 1.8E-13 96.2 6.4 163 111-289 71-250 (549)
135 KOG0226 RNA-binding proteins [ 98.8 1.7E-08 3.6E-13 85.2 6.5 81 112-194 187-267 (290)
136 KOG4661 Hsp27-ERE-TATA-binding 98.7 5.3E-08 1.1E-12 90.7 9.6 86 111-198 401-486 (940)
137 KOG4209 Splicing factor RNPS1, 98.7 1.8E-08 4E-13 86.8 6.2 85 205-291 98-182 (231)
138 KOG4454 RNA binding protein (R 98.7 8.2E-09 1.8E-13 85.1 2.7 79 207-288 8-86 (267)
139 KOG0533 RRM motif-containing p 98.7 7.5E-08 1.6E-12 82.8 7.8 80 111-193 79-158 (243)
140 KOG4660 Protein Mei2, essentia 98.6 2.4E-08 5.3E-13 93.1 3.8 73 204-282 71-143 (549)
141 KOG1548 Transcription elongati 98.6 2.8E-07 6E-12 81.2 9.1 83 205-289 131-221 (382)
142 KOG0151 Predicted splicing reg 98.6 2E-07 4.2E-12 89.2 8.1 83 111-195 170-255 (877)
143 KOG4209 Splicing factor RNPS1, 98.5 1E-07 2.2E-12 82.3 5.3 82 111-195 97-178 (231)
144 KOG0116 RasGAP SH3 binding pro 98.5 3.8E-07 8.2E-12 84.8 7.3 65 112-176 285-349 (419)
145 KOG0151 Predicted splicing reg 98.4 6E-07 1.3E-11 85.9 7.2 84 205-289 171-257 (877)
146 KOG1995 Conserved Zn-finger pr 98.4 9.8E-07 2.1E-11 78.5 6.7 84 207-291 65-156 (351)
147 KOG4676 Splicing factor, argin 98.3 1.3E-07 2.9E-12 84.4 0.6 166 116-289 8-226 (479)
148 KOG0128 RNA-binding protein SA 98.2 1.7E-07 3.7E-12 91.5 -1.2 158 114-275 570-733 (881)
149 PF11608 Limkain-b1: Limkain b 98.1 1.1E-05 2.4E-10 56.7 6.7 71 209-290 3-78 (90)
150 COG5175 MOT2 Transcriptional r 98.1 8.5E-06 1.9E-10 71.7 7.3 81 208-289 114-203 (480)
151 PF08777 RRM_3: RNA binding mo 98.0 6.2E-06 1.3E-10 62.3 4.3 70 209-285 2-76 (105)
152 PF11608 Limkain-b1: Limkain b 98.0 4.5E-05 9.8E-10 53.7 7.6 68 116-195 3-75 (90)
153 KOG1995 Conserved Zn-finger pr 98.0 2E-05 4.3E-10 70.3 7.1 82 112-195 63-152 (351)
154 KOG4849 mRNA cleavage factor I 98.0 6.1E-06 1.3E-10 72.9 3.6 70 115-184 80-151 (498)
155 KOG2314 Translation initiation 97.9 2.9E-05 6.2E-10 72.9 6.4 79 208-288 58-143 (698)
156 PF08777 RRM_3: RNA binding mo 97.9 3.6E-05 7.7E-10 58.2 5.8 59 116-180 2-60 (105)
157 KOG0115 RNA-binding protein p5 97.8 2.9E-05 6.3E-10 66.1 5.4 104 167-286 4-111 (275)
158 KOG1855 Predicted RNA-binding 97.8 3.5E-05 7.6E-10 70.1 5.2 69 204-273 227-308 (484)
159 KOG1996 mRNA splicing factor [ 97.7 9.1E-05 2E-09 64.2 6.8 67 222-289 300-367 (378)
160 PF14605 Nup35_RRM_2: Nup53/35 97.7 9.5E-05 2E-09 48.3 5.0 52 116-174 2-53 (53)
161 KOG4849 mRNA cleavage factor I 97.7 0.00012 2.7E-09 64.8 6.6 76 207-283 79-156 (498)
162 KOG4210 Nuclear localization s 97.6 4.8E-05 1E-09 68.1 4.0 81 114-197 183-264 (285)
163 KOG2202 U2 snRNP splicing fact 97.6 2.5E-05 5.3E-10 66.6 1.8 65 223-288 83-147 (260)
164 KOG3152 TBP-binding protein, a 97.5 4.1E-05 8.9E-10 65.2 2.1 72 208-280 74-157 (278)
165 KOG3152 TBP-binding protein, a 97.5 9.1E-05 2E-09 63.1 3.4 73 114-186 73-157 (278)
166 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00023 5E-09 46.5 4.2 52 209-268 2-53 (53)
167 KOG1855 Predicted RNA-binding 97.4 0.0002 4.3E-09 65.3 4.4 79 113-191 229-320 (484)
168 KOG2314 Translation initiation 97.4 0.00013 2.8E-09 68.6 3.2 73 113-186 56-134 (698)
169 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0011 2.3E-08 49.4 7.1 78 208-288 6-91 (100)
170 PF08952 DUF1866: Domain of un 97.1 0.002 4.4E-08 50.9 7.1 58 224-291 52-109 (146)
171 KOG2416 Acinus (induces apopto 97.1 0.00062 1.3E-08 64.6 4.7 79 205-289 441-522 (718)
172 KOG2591 c-Mpl binding protein, 97.1 0.0012 2.6E-08 62.2 6.4 73 207-286 174-249 (684)
173 KOG0129 Predicted RNA-binding 97.1 0.0019 4.1E-08 60.6 7.4 67 110-176 365-432 (520)
174 COG5175 MOT2 Transcriptional r 97.0 0.0014 3E-08 58.1 5.9 79 115-195 114-201 (480)
175 PF10309 DUF2414: Protein of u 97.0 0.0032 6.9E-08 42.2 6.1 54 209-271 6-62 (62)
176 PF10309 DUF2414: Protein of u 96.9 0.0066 1.4E-07 40.7 6.8 54 115-177 5-62 (62)
177 PF08675 RNA_bind: RNA binding 96.7 0.011 2.3E-07 41.9 7.0 56 114-178 8-63 (87)
178 KOG0115 RNA-binding protein p5 96.6 0.0092 2E-07 51.2 7.5 62 116-178 32-93 (275)
179 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0057 1.2E-07 45.5 5.4 78 114-194 5-89 (100)
180 KOG0112 Large RNA-binding prot 96.5 0.004 8.7E-08 62.1 5.2 80 111-196 451-530 (975)
181 KOG2416 Acinus (induces apopto 96.4 0.0025 5.3E-08 60.7 3.3 78 111-194 440-519 (718)
182 PF08675 RNA_bind: RNA binding 96.4 0.013 2.8E-07 41.5 6.0 55 209-273 10-64 (87)
183 KOG2253 U1 snRNP complex, subu 96.3 0.0098 2.1E-07 57.6 6.7 109 113-230 38-157 (668)
184 KOG4676 Splicing factor, argin 96.3 0.0052 1.1E-07 55.7 4.5 77 210-288 9-88 (479)
185 KOG2193 IGF-II mRNA-binding pr 96.3 0.0054 1.2E-07 56.1 4.3 77 209-292 2-79 (584)
186 PF07576 BRAP2: BRCA1-associat 96.2 0.044 9.6E-07 41.6 8.4 66 209-277 14-80 (110)
187 KOG1996 mRNA splicing factor [ 96.1 0.015 3.2E-07 50.8 6.2 63 129-193 300-363 (378)
188 KOG2068 MOT2 transcription fac 96.1 0.0021 4.7E-08 57.3 1.1 80 209-289 78-163 (327)
189 KOG2202 U2 snRNP splicing fact 96.0 0.0034 7.4E-08 53.8 1.8 61 130-193 83-144 (260)
190 PF07576 BRAP2: BRCA1-associat 96.0 0.094 2E-06 39.8 9.3 69 113-183 11-80 (110)
191 KOG2135 Proteins containing th 96.0 0.0092 2E-07 55.5 4.5 73 210-290 374-447 (526)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.014 3E-07 48.6 3.5 81 207-288 6-97 (176)
193 PF10567 Nab6_mRNP_bdg: RNA-re 95.4 0.28 6E-06 43.3 11.2 177 111-288 11-231 (309)
194 KOG4574 RNA-binding protein (c 95.3 0.013 2.7E-07 58.3 2.9 75 210-291 300-376 (1007)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.018 4E-07 47.8 2.9 71 113-183 5-81 (176)
196 PF04847 Calcipressin: Calcipr 95.0 0.082 1.8E-06 44.1 6.6 63 221-290 8-72 (184)
197 PF03880 DbpA: DbpA RNA bindin 94.6 0.14 3.1E-06 35.8 6.1 59 218-286 11-74 (74)
198 KOG0804 Cytoplasmic Zn-finger 94.6 0.1 2.2E-06 48.6 6.5 68 208-277 74-141 (493)
199 PF08952 DUF1866: Domain of un 94.4 0.057 1.2E-06 42.8 3.9 52 131-191 52-103 (146)
200 PF15023 DUF4523: Protein of u 94.3 0.11 2.5E-06 40.6 5.4 72 207-287 85-160 (166)
201 KOG2591 c-Mpl binding protein, 94.2 0.096 2.1E-06 49.9 5.6 60 112-178 172-233 (684)
202 KOG4574 RNA-binding protein (c 93.9 0.031 6.7E-07 55.7 2.0 74 117-196 300-373 (1007)
203 PF07292 NID: Nmi/IFP 35 domai 93.5 0.047 1E-06 39.5 1.8 69 160-229 1-73 (88)
204 KOG0804 Cytoplasmic Zn-finger 93.5 0.65 1.4E-05 43.4 9.4 68 115-184 74-142 (493)
205 KOG2318 Uncharacterized conser 93.3 0.79 1.7E-05 44.2 9.9 130 112-288 171-307 (650)
206 PF15023 DUF4523: Protein of u 93.2 0.24 5.1E-06 38.9 5.3 73 112-194 83-159 (166)
207 PF11767 SET_assoc: Histone ly 93.0 0.73 1.6E-05 31.4 6.9 55 219-283 11-65 (66)
208 KOG2068 MOT2 transcription fac 92.7 0.077 1.7E-06 47.6 2.3 76 116-194 78-160 (327)
209 KOG2253 U1 snRNP complex, subu 92.0 0.07 1.5E-06 51.9 1.3 72 205-286 37-108 (668)
210 KOG4285 Mitotic phosphoprotein 90.8 0.57 1.2E-05 41.5 5.5 62 115-184 197-258 (350)
211 PF04847 Calcipressin: Calcipr 90.1 0.45 9.7E-06 39.8 4.2 60 128-195 8-69 (184)
212 KOG4285 Mitotic phosphoprotein 90.1 1.3 2.8E-05 39.3 7.1 75 208-291 197-272 (350)
213 KOG2135 Proteins containing th 89.2 0.18 3.9E-06 47.2 1.3 78 112-198 369-447 (526)
214 PF11767 SET_assoc: Histone ly 87.5 2.1 4.5E-05 29.2 5.3 49 125-182 10-58 (66)
215 TIGR02542 B_forsyth_147 Bacter 86.3 2 4.3E-05 32.4 5.0 46 216-261 82-129 (145)
216 KOG2891 Surface glycoprotein [ 79.2 5.2 0.00011 35.1 5.6 93 142-242 67-194 (445)
217 KOG2891 Surface glycoprotein [ 78.7 0.83 1.8E-05 39.9 0.6 69 114-182 148-247 (445)
218 PF03880 DbpA: DbpA RNA bindin 74.2 12 0.00027 25.9 5.6 57 125-192 11-72 (74)
219 KOG4410 5-formyltetrahydrofola 74.1 13 0.00028 32.9 6.6 48 209-262 331-378 (396)
220 PF14111 DUF4283: Domain of un 73.5 6.3 0.00014 31.5 4.5 117 118-243 18-139 (153)
221 KOG4410 5-formyltetrahydrofola 72.2 27 0.00059 30.9 8.1 54 111-169 326-379 (396)
222 PRK11634 ATP-dependent RNA hel 71.5 17 0.00037 36.8 7.9 69 210-289 488-563 (629)
223 PRK14548 50S ribosomal protein 70.7 16 0.00036 26.2 5.5 58 117-177 22-81 (84)
224 KOG4483 Uncharacterized conser 69.4 12 0.00026 34.7 5.6 57 113-176 389-446 (528)
225 KOG3424 40S ribosomal protein 67.0 13 0.00028 28.3 4.4 46 219-265 34-83 (132)
226 KOG4019 Calcineurin-mediated s 67.0 5.4 0.00012 32.8 2.7 43 250-292 50-93 (193)
227 KOG4483 Uncharacterized conser 66.8 32 0.00069 32.1 7.7 56 207-270 390-446 (528)
228 KOG2295 C2H2 Zn-finger protein 64.9 2 4.3E-05 41.4 -0.2 70 113-182 229-298 (648)
229 PF10567 Nab6_mRNP_bdg: RNA-re 64.7 26 0.00055 31.3 6.5 81 207-288 14-107 (309)
230 TIGR03636 L23_arch archaeal ri 64.6 28 0.0006 24.5 5.6 57 117-176 15-73 (77)
231 KOG2295 C2H2 Zn-finger protein 63.3 1.6 3.5E-05 41.9 -1.1 74 207-281 230-303 (648)
232 COG5638 Uncharacterized conser 63.1 78 0.0017 29.7 9.5 36 252-287 259-296 (622)
233 COG0445 GidA Flavin-dependent 62.3 45 0.00097 32.9 8.2 93 159-260 238-344 (621)
234 PRK14548 50S ribosomal protein 61.5 31 0.00068 24.7 5.5 57 211-270 23-80 (84)
235 PF07530 PRE_C2HC: Associated 61.3 18 0.00039 24.8 4.1 63 223-289 2-65 (68)
236 KOG1924 RhoA GTPase effector D 58.3 17 0.00037 37.0 4.8 9 264-272 804-812 (1102)
237 KOG4274 Positive cofactor 2 (P 57.1 27 0.00058 34.1 5.7 17 257-273 513-529 (742)
238 TIGR03636 L23_arch archaeal ri 56.8 44 0.00096 23.5 5.5 57 211-270 16-73 (77)
239 COG5594 Uncharacterized integr 53.8 3.9 8.5E-05 41.5 -0.3 29 112-140 205-234 (827)
240 PRK11901 hypothetical protein; 51.8 36 0.00077 31.0 5.4 65 112-181 242-308 (327)
241 KOG3702 Nuclear polyadenylated 51.3 31 0.00068 34.3 5.3 71 210-282 513-583 (681)
242 PF07292 NID: Nmi/IFP 35 domai 50.9 8.6 0.00019 27.8 1.2 24 113-136 50-73 (88)
243 PF03468 XS: XS domain; Inter 50.3 20 0.00044 27.4 3.2 38 220-261 29-66 (116)
244 COG5193 LHP1 La protein, small 50.0 7.7 0.00017 36.0 1.0 62 114-175 173-244 (438)
245 PF08734 GYD: GYD domain; Int 49.7 69 0.0015 23.2 5.8 45 129-177 22-67 (91)
246 PRK01178 rps24e 30S ribosomal 49.2 56 0.0012 24.3 5.2 47 219-266 30-80 (99)
247 KOG1295 Nonsense-mediated deca 48.3 21 0.00045 33.1 3.4 70 113-182 5-77 (376)
248 PF03468 XS: XS domain; Inter 47.5 25 0.00054 27.0 3.3 46 127-175 29-75 (116)
249 PF02714 DUF221: Domain of unk 47.3 20 0.00043 32.8 3.3 36 254-291 1-36 (325)
250 PF15513 DUF4651: Domain of un 45.4 43 0.00093 22.4 3.7 20 130-149 9-28 (62)
251 smart00596 PRE_C2HC PRE_C2HC d 43.8 43 0.00092 23.0 3.6 62 223-288 2-64 (69)
252 KOG2318 Uncharacterized conser 40.9 51 0.0011 32.4 4.9 37 159-195 270-306 (650)
253 KOG4213 RNA-binding protein La 40.9 37 0.00081 28.0 3.5 55 116-176 112-169 (205)
254 PTZ00191 60S ribosomal protein 40.1 80 0.0017 25.2 5.1 55 211-268 84-139 (145)
255 PF03439 Spt5-NGN: Early trans 39.9 82 0.0018 22.4 4.9 28 249-276 42-69 (84)
256 PF07530 PRE_C2HC: Associated 39.5 38 0.00082 23.2 2.9 40 130-169 2-42 (68)
257 KOG4008 rRNA processing protei 38.8 27 0.00058 30.2 2.5 35 111-145 36-70 (261)
258 PTZ00071 40S ribosomal protein 38.3 88 0.0019 24.6 5.0 46 219-265 35-85 (132)
259 KOG1295 Nonsense-mediated deca 38.2 39 0.00084 31.4 3.6 67 209-276 8-77 (376)
260 PRK10905 cell division protein 37.7 58 0.0013 29.6 4.5 63 114-180 246-309 (328)
261 PF04026 SpoVG: SpoVG; InterP 37.7 63 0.0014 23.2 3.9 26 141-166 2-27 (84)
262 COG3254 Uncharacterized conser 36.8 1.2E+02 0.0027 22.6 5.3 43 222-268 26-68 (105)
263 PF09869 DUF2096: Uncharacteri 36.6 1.1E+02 0.0025 24.9 5.6 51 210-272 114-164 (169)
264 KOG4213 RNA-binding protein La 36.2 62 0.0013 26.8 4.0 55 209-269 112-168 (205)
265 PRK13259 regulatory protein Sp 35.4 65 0.0014 23.6 3.7 26 141-166 2-27 (94)
266 PF11823 DUF3343: Protein of u 35.3 45 0.00097 22.9 2.8 24 253-276 3-26 (73)
267 PF02714 DUF221: Domain of unk 34.9 71 0.0015 29.1 4.9 56 160-230 1-56 (325)
268 PRK10629 EnvZ/OmpR regulon mod 33.5 2.3E+02 0.005 22.1 7.2 69 210-287 37-109 (127)
269 KOG4019 Calcineurin-mediated s 32.6 23 0.0005 29.3 1.1 76 113-195 8-88 (193)
270 PRK11901 hypothetical protein; 32.5 89 0.0019 28.5 4.8 61 207-273 244-306 (327)
271 PF14893 PNMA: PNMA 32.3 49 0.0011 30.5 3.3 79 207-292 17-100 (331)
272 PF04026 SpoVG: SpoVG; InterP 32.2 90 0.002 22.4 4.0 45 235-286 2-48 (84)
273 PTZ00191 60S ribosomal protein 32.2 1.5E+02 0.0033 23.7 5.6 54 117-173 83-138 (145)
274 KOG4365 Uncharacterized conser 31.2 9.1 0.0002 35.9 -1.5 78 209-288 4-81 (572)
275 COG3254 Uncharacterized conser 30.6 1.7E+02 0.0037 21.9 5.2 43 130-175 27-69 (105)
276 COG5193 LHP1 La protein, small 28.8 34 0.00073 32.0 1.6 61 208-269 174-244 (438)
277 PF08544 GHMP_kinases_C: GHMP 28.7 2E+02 0.0043 19.8 5.6 44 130-178 37-80 (85)
278 COG5353 Uncharacterized protei 28.7 3E+02 0.0064 22.1 6.5 54 116-169 88-154 (161)
279 PRK13259 regulatory protein Sp 28.6 1E+02 0.0023 22.6 3.8 26 235-260 2-27 (94)
280 cd00874 RNA_Cyclase_Class_II R 28.5 4.6E+02 0.0099 24.2 8.9 118 117-259 111-238 (326)
281 PF11411 DNA_ligase_IV: DNA li 28.3 46 0.001 19.6 1.6 16 125-140 19-34 (36)
282 COG5353 Uncharacterized protei 27.7 2.4E+02 0.0052 22.6 5.9 55 209-263 88-154 (161)
283 COG0771 MurD UDP-N-acetylmuram 27.1 2.7E+02 0.0058 27.0 7.4 108 127-271 293-410 (448)
284 KOG1985 Vesicle coat complex C 26.6 2.1E+02 0.0045 29.7 6.7 18 206-223 293-310 (887)
285 KOG4369 RTK signaling protein 26.4 31 0.00067 36.9 1.0 12 131-142 1967-1978(2131)
286 PF00403 HMA: Heavy-metal-asso 26.4 1.8E+02 0.004 18.7 5.7 54 117-176 1-58 (62)
287 cd00187 TOP4c DNA Topoisomeras 26.0 2E+02 0.0044 27.8 6.4 61 115-177 225-289 (445)
288 PF08734 GYD: GYD domain; Int 26.0 2.6E+02 0.0056 20.2 6.3 47 222-272 22-68 (91)
289 PF01282 Ribosomal_S24e: Ribos 25.6 2.5E+02 0.0055 20.0 5.6 47 218-265 11-61 (84)
290 COG2088 SpoVG Uncharacterized 25.2 1.2E+02 0.0025 21.9 3.4 26 141-166 2-27 (95)
291 cd00875 RNA_Cyclase_Class_I RN 25.1 3.3E+02 0.0072 25.2 7.5 114 122-259 119-244 (341)
292 PF13689 DUF4154: Domain of un 25.0 1.1E+02 0.0025 24.1 4.0 60 222-287 2-61 (145)
293 PF03439 Spt5-NGN: Early trans 24.9 1.3E+02 0.0027 21.4 3.8 34 141-179 33-66 (84)
294 COG2004 RPS24A Ribosomal prote 24.3 2.5E+02 0.0053 21.2 5.2 47 218-265 30-80 (107)
295 KOG4274 Positive cofactor 2 (P 24.3 1.8E+02 0.0038 28.8 5.5 14 259-272 544-557 (742)
296 PF09707 Cas_Cas2CT1978: CRISP 23.4 1.7E+02 0.0038 21.0 4.1 48 114-164 24-71 (86)
297 PF13820 Nucleic_acid_bd: Puta 23.4 1.6E+02 0.0034 23.7 4.3 59 117-179 6-67 (149)
298 PF13046 DUF3906: Protein of u 23.3 1E+02 0.0022 20.8 2.7 34 127-162 30-63 (64)
299 KOG0921 Dosage compensation co 23.3 96 0.0021 32.6 3.7 22 313-334 1204-1225(1282)
300 PRK08559 nusG transcription an 22.8 2.3E+02 0.0049 22.8 5.3 46 129-179 18-68 (153)
301 KOG4008 rRNA processing protei 22.3 73 0.0016 27.6 2.3 32 207-239 39-70 (261)
302 cd04904 ACT_AAAH ACT domain of 21.9 2.7E+02 0.0058 19.0 5.5 49 129-179 14-65 (74)
303 PF00901 Orbi_VP5: Orbivirus o 21.5 25 0.00055 33.7 -0.6 105 116-229 356-472 (508)
304 PF14893 PNMA: PNMA 21.1 69 0.0015 29.5 2.1 53 112-166 15-71 (331)
305 CHL00030 rpl23 ribosomal prote 20.9 2.5E+02 0.0055 20.5 4.7 35 210-244 20-55 (93)
306 PF11249 DUF3047: Protein of u 20.6 2E+02 0.0044 24.0 4.7 33 223-255 145-177 (183)
307 PLN02690 Agmatine deiminase 20.4 4.2E+02 0.009 25.0 7.2 32 211-243 180-211 (374)
308 PF11061 DUF2862: Protein of u 20.1 2.1E+02 0.0046 19.3 3.7 31 131-167 19-52 (64)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.6e-38 Score=289.81 Aligned_cols=176 Identities=25% Similarity=0.462 Sum_probs=159.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++||++|+++|+.||+|++|+|++|+.+++++|||||+|.+.++|++||+.|++..+ ..+.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i 179 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRL 179 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCcee
Confidence 4556788999999999999999999999999999999999999999999999999999999999999999999 66788
Q ss_pred cccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHH
Q 018927 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (349)
++.|+..... ....++|||+|||.++||++|+++|+ +||+|++|+|++|+.++++||||||+|++.++|++||+
T Consensus 180 ~V~~a~p~~~-----~~~~~~lfV~nLp~~vtee~L~~~F~-~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 180 KVSYARPGGE-----SIKDTNLYVTNLPRTITDDQLDTIFG-KYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eeeccccccc-----ccccceeEEeCCCCcccHHHHHHHHH-hcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 8888764321 22456899999999999999999996 99999999999999999999999999999999999999
Q ss_pred HhCCeEeCC--eeEEEEEcCCCCCCC
Q 018927 270 EMNGVYCSS--RPMRIDVATPKKASG 293 (349)
Q Consensus 270 ~l~g~~~~g--~~i~v~~a~~~~~~~ 293 (349)
.||+..+++ ++|+|++++.+...+
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HhCCCccCCCceeEEEEECCcccccc
Confidence 999999875 799999998876554
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-34 Score=242.02 Aligned_cols=174 Identities=30% Similarity=0.556 Sum_probs=158.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
..+..-.|||+.|..+++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||..|+|..| ..|.||
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IR 135 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIR 135 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceee
Confidence 344466799999999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred ccccccCCCCCc-----------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeC
Q 018927 191 LNWATFSGSDRR-----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (349)
Q Consensus 191 ~~~~~~~~~~~~-----------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~ 259 (349)
.+|+..++.+.. .....+++|||+||+..+||++|++.|+ .||.|.+|+|++| +||+||+|+
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs-~fG~I~EVRvFk~------qGYaFVrF~ 208 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS-PFGPIQEVRVFKD------QGYAFVRFE 208 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc-cCCcceEEEEecc------cceEEEEec
Confidence 999987764332 2345678999999999999999999997 9999999999987 579999999
Q ss_pred CHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCCC
Q 018927 260 DENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 260 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~ 293 (349)
+.|+|.+||..+|+.+|+|..++|.|.+......
T Consensus 209 tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred chhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 9999999999999999999999999998876543
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.4e-34 Score=276.97 Aligned_cols=177 Identities=18% Similarity=0.364 Sum_probs=156.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+||+++++|++|+++|+.||+|.+|++++|+.+|+++|||||+|.+.++|.+|++.|||..+ .++.|++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i--~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE--ecceeeec
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999 55666666
Q ss_pred ccccCCCCC------ccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHH
Q 018927 193 WATFSGSDR------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 193 ~~~~~~~~~------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (349)
+........ .......++|||+||++++++++|+++|+ .||.|++++|.+|+.++++||||||+|++.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs-~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 543221111 11223457899999999999999999996 99999999999999999999999999999999999
Q ss_pred HHHHhCCeEeCCeeEEEEEcCCCCCC
Q 018927 267 AMTEMNGVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 267 A~~~l~g~~~~g~~i~v~~a~~~~~~ 292 (349)
||+.||+..|+|+.|+|.++.++...
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999999999999999976544
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2e-33 Score=261.49 Aligned_cols=169 Identities=27% Similarity=0.507 Sum_probs=153.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
..++|||+|||.++||++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|+|..| .++.|++.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 467999999999999999999999999999999999999999999999999999999999999999988 667788888
Q ss_pred cccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018927 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (349)
+..... .....+|||+|||..+++++|+++|. .||.|..++++.+..++.++|||||+|++.++|++||+.|||
T Consensus 80 a~~~~~-----~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPSSD-----SIKGANLYVSGLPKTMTQHELESIFS-PFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eccccc-----ccccceEEECCccccCCHHHHHHHHh-ccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 764422 23456899999999999999999996 999999999999988899999999999999999999999999
Q ss_pred eEeCC--eeEEEEEcCCCC
Q 018927 274 VYCSS--RPMRIDVATPKK 290 (349)
Q Consensus 274 ~~~~g--~~i~v~~a~~~~ 290 (349)
..+.| ++|+|+++..+.
T Consensus 154 ~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CccCCCceeEEEEECCCCC
Confidence 99876 678999987665
No 5
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.5e-34 Score=253.57 Aligned_cols=179 Identities=23% Similarity=0.497 Sum_probs=160.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCC-CCCCCCccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-LMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~-~~~~~~~~i 189 (349)
.+.+.-+||||.||..++|.||+++|++||.|.+|.|++|+.++.++|||||.|.++++|.+|+..|+.. .|.|...+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3456678999999999999999999999999999999999999999999999999999999999999775 588999999
Q ss_pred cccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHH
Q 018927 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (349)
.+.+++.+... ...+++|||+.|+..+||+||+++|+ +||.|++|+|++|.+ +.+||||||+|.++|.|..||+
T Consensus 110 qvk~Ad~E~er----~~~e~KLFvg~lsK~~te~evr~iFs-~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 110 QVKYADGERER----IVEERKLFVGMLSKQCTENEVREIFS-RFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred eecccchhhhc----cccchhhhhhhccccccHHHHHHHHH-hhCccchhhheeccc-ccccceeEEEEehHHHHHHHHH
Confidence 99998754332 23467999999999999999999998 999999999999965 8999999999999999999999
Q ss_pred HhCCeE-eC--CeeEEEEEcCCCCCCCcc
Q 018927 270 EMNGVY-CS--SRPMRIDVATPKKASGYQ 295 (349)
Q Consensus 270 ~l~g~~-~~--g~~i~v~~a~~~~~~~~~ 295 (349)
.|||.. ++ ..+|.|+||++++.+..+
T Consensus 184 a~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred hhccceeeccCCCceEEEecccCCCchHH
Confidence 999854 44 579999999999877543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.7e-33 Score=257.63 Aligned_cols=177 Identities=26% Similarity=0.494 Sum_probs=156.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
..++|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.|+|..+.+...++++.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999999988778888877
Q ss_pred cccCCCCCc-----------------------------------------------------------------------
Q 018927 194 ATFSGSDRR----------------------------------------------------------------------- 202 (349)
Q Consensus 194 ~~~~~~~~~----------------------------------------------------------------------- 202 (349)
+........
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 643220000
Q ss_pred ----------------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHH
Q 018927 203 ----------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 203 ----------------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (349)
.....+.+|||+|||+++++++|+++|+ .||.|++|+|++|+.++.+||||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~-~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFG-PFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011123699999999999999999997 99999999999999999999999999999999999
Q ss_pred HHHHhCCeEeCCeeEEEEEcCCCCC
Q 018927 267 AMTEMNGVYCSSRPMRIDVATPKKA 291 (349)
Q Consensus 267 A~~~l~g~~~~g~~i~v~~a~~~~~ 291 (349)
||+.|||..|+||.|+|.|+..|..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999998764
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.3e-32 Score=259.05 Aligned_cols=170 Identities=21% Similarity=0.371 Sum_probs=139.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
+...++|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.|++..+.. ++.+.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~-Gr~l~V 132 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP-GRLLGV 132 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC-Cccccc
Confidence 345689999999999999999999999999999999999 699999999999999999999999999876631 111111
Q ss_pred cc------------------------------------------------------------------------------
Q 018927 192 NW------------------------------------------------------------------------------ 193 (349)
Q Consensus 192 ~~------------------------------------------------------------------------------ 193 (349)
.+
T Consensus 133 ~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr 212 (578)
T TIGR01648 133 CISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 212 (578)
T ss_pred cccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCc
Confidence 10
Q ss_pred ------cccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccC--CCeeeeEEEEcCCCCCcceEEEEEeCCHHHHH
Q 018927 194 ------ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265 (349)
Q Consensus 194 ------~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~--G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~ 265 (349)
+..............++|||+||++++|+++|+++|+ .| |+|++|++++ +||||+|++.++|+
T Consensus 213 ~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~-~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~ 283 (578)
T TIGR01648 213 VIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFS-EFKPGKVERVKKIR--------DYAFVHFEDREDAV 283 (578)
T ss_pred eEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHH-hcCCCceEEEEeec--------CeEEEEeCCHHHHH
Confidence 0000000000112246799999999999999999996 99 9999998763 49999999999999
Q ss_pred HHHHHhCCeEeCCeeEEEEEcCCCCCC
Q 018927 266 RAMTEMNGVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 266 ~A~~~l~g~~~~g~~i~v~~a~~~~~~ 292 (349)
+||+.||+..|+|+.|+|+|++++...
T Consensus 284 kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 284 KAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 999999999999999999999987654
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=8.3e-32 Score=265.05 Aligned_cols=167 Identities=31% Similarity=0.528 Sum_probs=151.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccccc
Q 018927 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~ 196 (349)
+|||+|||.++||++|+++|++||+|.+|+|.+|+.+++++|||||+|.+.++|++|++.+++..+ .++.|++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999999988 678899998764
Q ss_pred CCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe
Q 018927 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (349)
Q Consensus 197 ~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~ 276 (349)
..... .....+|||+||+.++++++|+++|+ .||.|.+|+|.++. +|+++|||||+|++.++|.+|++.|||..+
T Consensus 80 ~~~~~---~~~~~~vfV~nLp~~~~~~~L~~~F~-~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSLR---RSGVGNIFVKNLDKSVDNKALFDTFS-KFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc---ccCCCceEEcCCCccCCHHHHHHHHH-hcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 33222 22345899999999999999999997 99999999999984 588999999999999999999999999999
Q ss_pred CCeeEEEEEcCCCC
Q 018927 277 SSRPMRIDVATPKK 290 (349)
Q Consensus 277 ~g~~i~v~~a~~~~ 290 (349)
+|+.|.|.....+.
T Consensus 155 ~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 155 NDKEVYVGRFIKKH 168 (562)
T ss_pred cCceEEEecccccc
Confidence 99999997765544
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=238.79 Aligned_cols=172 Identities=20% Similarity=0.394 Sum_probs=145.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
..-.|.||||.||.++.|++|..+|++.|+|-+++|++|+.+|.+||||||.|.+.+.|.+|++.||+..|. .++.|++
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igv 158 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGV 158 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEE
Confidence 356789999999999999999999999999999999999999999999999999999999999999999874 3333333
Q ss_pred c-------------------------------------------------------------------------------
Q 018927 192 N------------------------------------------------------------------------------- 192 (349)
Q Consensus 192 ~------------------------------------------------------------------------------- 192 (349)
.
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 2
Q ss_pred -----ccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHH
Q 018927 193 -----WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (349)
Q Consensus 193 -----~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (349)
|+.+...........-..|||+||+.++|+|.|+++|+ .||.|++|+.++| ||||.|.+.++|.+|
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~-~~G~veRVkk~rD--------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFN-EFGKVERVKKPRD--------YAFVHFAEREDAVKA 309 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHH-hccceEEeecccc--------eeEEeecchHHHHHH
Confidence 22221111111122224799999999999999999997 9999999998876 999999999999999
Q ss_pred HHHhCCeEeCCeeEEEEEcCCCCCCC
Q 018927 268 MTEMNGVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 268 ~~~l~g~~~~g~~i~v~~a~~~~~~~ 293 (349)
++.+||++|+|..|.|.+|+|....+
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhc
Confidence 99999999999999999999976544
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.5e-30 Score=250.38 Aligned_cols=174 Identities=26% Similarity=0.498 Sum_probs=151.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||..+++++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|.+||. |+|..+. +++|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~--g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL--GRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC--CeeeEE
Confidence 3457899999999999999999999999999999999999999999999999999999999995 8999884 555555
Q ss_pred cccccCCCCC-------ccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHH
Q 018927 192 NWATFSGSDR-------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (349)
Q Consensus 192 ~~~~~~~~~~-------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A 264 (349)
.+........ ........+|||+|||..+|+++|+++|. .||.|.+|.|+.+..+|.++|||||+|.+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~-~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE-PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 5443211110 01112357999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 265 SRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 265 ~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
.+|++.|||..|.|+.|+|.|+...
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCC
Confidence 9999999999999999999998743
No 11
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=5.7e-30 Score=213.07 Aligned_cols=173 Identities=27% Similarity=0.506 Sum_probs=157.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
..+..+.|.|--||..+|+|||+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..+ ..+.|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIK 114 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIK 114 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEE
Confidence 445566799999999999999999999999999999999999999999999999999999999999999988 778899
Q ss_pred ccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018927 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (349)
|.++.++.. ......|||.+||..+|..||+.+|+ .||.|..-+|+.|.-+|.+||.+||+|+..++|++||+.
T Consensus 115 VSyARPSs~-----~Ik~aNLYvSGlPktMtqkelE~iFs-~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSD-----SIKDANLYVSGLPKTMTQKELEQIFS-PFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChh-----hhcccceEEecCCccchHHHHHHHHH-HhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 999886633 33455899999999999999999997 999999999999999999999999999999999999999
Q ss_pred hCCeEeC--CeeEEEEEcCCCCC
Q 018927 271 MNGVYCS--SRPMRIDVATPKKA 291 (349)
Q Consensus 271 l~g~~~~--g~~i~v~~a~~~~~ 291 (349)
|||..-. ..+|.|+||.....
T Consensus 189 lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCccc
Confidence 9998754 56899999987643
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.7e-29 Score=248.75 Aligned_cols=176 Identities=26% Similarity=0.498 Sum_probs=152.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCC--Ccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT--DQPFR 190 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~--~~~i~ 190 (349)
...++|||+||++++|+++|+++|+.||+|.++.++++. +|+++|||||+|.+.++|.+|++.|++..+... +..+.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 455789999999999999999999999999999999986 789999999999999999999999999998521 55566
Q ss_pred ccccccCCCC-------------CccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEE
Q 018927 191 LNWATFSGSD-------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257 (349)
Q Consensus 191 ~~~~~~~~~~-------------~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~ 257 (349)
+.++..+... .........+|||+||+.++|+++|+++|+ .||.|++|+|+.| .++.++|||||+
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~-~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFS-ECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHH-hcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 6555433211 001133456899999999999999999996 9999999999999 679999999999
Q ss_pred eCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCC
Q 018927 258 FGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (349)
Q Consensus 258 F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 291 (349)
|.+.++|.+|++.|||+.|+|++|.|.+|..+..
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 9999999999999999999999999999998753
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.97 E-value=3.8e-30 Score=203.57 Aligned_cols=176 Identities=28% Similarity=0.564 Sum_probs=158.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
+.+...+|||+||+..++++-|.++|-..|+|+++++.+|+.+...+|||||+|.++++|+-|++-|+..++ .+++|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIr 82 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIR 82 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeE
Confidence 345667999999999999999999999999999999999999999999999999999999999999997666 889999
Q ss_pred ccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeee-eEEEEcCCCCCcceEEEEEeCCHHHHHHHHH
Q 018927 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~-v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (349)
++.+.. .......+.+|||+||+++++|..|.+.|+ .||.+.. -+|++|.+||.++|||||.|++.|.+.+|+.
T Consensus 83 v~kas~----~~~nl~vganlfvgNLd~~vDe~~L~dtFs-afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 83 VNKASA----HQKNLDVGANLFVGNLDPEVDEKLLYDTFS-AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred EEeccc----ccccccccccccccccCcchhHHHHHHHHH-hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 987762 122233457999999999999999999997 9998765 4789999999999999999999999999999
Q ss_pred HhCCeEeCCeeEEEEEcCCCCCCC
Q 018927 270 EMNGVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 270 ~l~g~~~~g~~i~v~~a~~~~~~~ 293 (349)
.+||..++.|+|+|.++..+..++
T Consensus 158 s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 158 SMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HhccchhcCCceEEEEEEecCCCc
Confidence 999999999999999999887665
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=7.5e-28 Score=231.67 Aligned_cols=163 Identities=20% Similarity=0.225 Sum_probs=137.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh--CCCCCCCCCccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY--SGSLMPNTDQPFRL 191 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l--~g~~~~~~~~~i~~ 191 (349)
++++|||+|||+++||++|+++|+.||.|.+|++++++ +||||+|.+.++|.+|++.+ ++..+ .+++|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYI--RGQPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEE
Confidence 36899999999999999999999999999999998754 89999999999999999875 55556 7788999
Q ss_pred cccccCCCCCcc-------ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHH
Q 018927 192 NWATFSGSDRRT-------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (349)
Q Consensus 192 ~~~~~~~~~~~~-------~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A 264 (349)
.|+......... ......+|||+||++.+|+++|+++|+ .||.|.+|.|+++.. +|+|||+|.+.++|
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~-~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN-PYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHh-ccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 887643211111 111224799999999999999999997 999999999987632 47999999999999
Q ss_pred HHHHHHhCCeEeCC--eeEEEEEcCCC
Q 018927 265 SRAMTEMNGVYCSS--RPMRIDVATPK 289 (349)
Q Consensus 265 ~~A~~~l~g~~~~g--~~i~v~~a~~~ 289 (349)
.+|++.|||..|.+ +.|+|.|++++
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCC
Confidence 99999999999964 58999998864
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.8e-29 Score=208.80 Aligned_cols=170 Identities=33% Similarity=0.604 Sum_probs=140.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
+++.|+|||+||+.++||+-|..||...|.|.+++|+.| .+++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 567899999999999999999999999999999999886 3455
Q ss_pred cccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 018927 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (349)
.|+.......+.......-+||+.|..+++.++|++.|. +||+|.+++|++|..|+++|||+||.|.+.++|++||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~-pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA-PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc-cccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 555544333333333455799999999999999999997 9999999999999999999999999999999999999999
Q ss_pred CCeEeCCeeEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCceEEccCC
Q 018927 272 NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATVSPSFP 335 (349)
Q Consensus 272 ~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~g~g~~g~~~~~~~~~~~~~~~~~~vgn~ 335 (349)
||..|++|.|+-.||+.|..... +++ -.--.--.++.++|++|||||+
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n------------~~~----ltfdeV~NQssp~NtsVY~G~I 172 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMN------------GKP----LTFDEVYNQSSPDNTSVYVGNI 172 (321)
T ss_pred CCeeeccceeeccccccCccccC------------CCC----ccHHHHhccCCCCCceEEeCCc
Confidence 99999999999999999873320 000 0001123566889999999998
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.5e-27 Score=229.59 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=141.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
...+|||+||++++|+++|+++|+.||+|.+|.|.++.. +++|||+|.+.++|.+|++.|||..|.+....++++|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 345799999999999999999999999999999988653 3689999999999999999999999977666777777
Q ss_pred cccCCC-------C------------Cc----------------------------------------------------
Q 018927 194 ATFSGS-------D------------RR---------------------------------------------------- 202 (349)
Q Consensus 194 ~~~~~~-------~------------~~---------------------------------------------------- 202 (349)
++...- . ..
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 653110 0 00
Q ss_pred -------------------cccCCCcceeccCCCC-CCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHH
Q 018927 203 -------------------TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (349)
Q Consensus 203 -------------------~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~ 262 (349)
....++++|||+||++ .+|+++|+++|+ .||.|.+|+|++++ +|||||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~-~yG~V~~vki~~~~-----~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFC-VYGNVERVKFMKNK-----KETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCC-----CCEEEEEECCHH
Confidence 0012456899999998 699999999996 99999999999863 589999999999
Q ss_pred HHHHHHHHhCCeEeCCeeEEEEEcCCCC
Q 018927 263 ERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 263 ~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
+|.+||+.|||..|.|+.|+|++++.+.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9999999999999999999999987653
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.2e-28 Score=203.66 Aligned_cols=176 Identities=27% Similarity=0.479 Sum_probs=157.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
....|||++||..+|..||+.+|+.||.|..-+|+.|..+|.+||.+||.|+.+++|+.||+.|||.+-.+...+|.|.|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCCc----------------------------------------------------------cccCCCcceeccC
Q 018927 194 ATFSGSDRR----------------------------------------------------------TEACSDLSIFVGD 215 (349)
Q Consensus 194 ~~~~~~~~~----------------------------------------------------------~~~~~~~~l~V~n 215 (349)
+........ .......+|||.|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 762210000 0112346899999
Q ss_pred CCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCC
Q 018927 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 216 l~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
|.++.+|..|+.+|+ .||.|.+|+|++|..|.+.|||+||.+.+.++|..||..|||..+++|.|.|.|...|.
T Consensus 286 Lspd~de~~LWQlFg-pFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 286 LSPDADESILWQLFG-PFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred cCCCchHhHHHHHhC-cccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 999999999999997 99999999999999999999999999999999999999999999999999999987764
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=4.3e-27 Score=229.47 Aligned_cols=171 Identities=18% Similarity=0.292 Sum_probs=139.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHT------------GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~------------G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 177 (349)
......++|||||||+++|+++|+++|..+ +.|..+.+. +.+|||||+|.+.++|..|| .|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-cC
Confidence 345677899999999999999999999975 234444443 34599999999999999999 59
Q ss_pred CCCCCCCCCccccccccccCCCC------------------------CccccCCCcceeccCCCCCCCHHHHHHHHhccC
Q 018927 178 SGSLMPNTDQPFRLNWATFSGSD------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233 (349)
Q Consensus 178 ~g~~~~~~~~~i~~~~~~~~~~~------------------------~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~ 233 (349)
+|..+.+ ..|++.+....... ........++|||+|||..+|+++|+++|. .|
T Consensus 243 ~g~~~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~ 319 (509)
T TIGR01642 243 DSIIYSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE-SF 319 (509)
T ss_pred CCeEeeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hc
Confidence 9998854 55555432211000 000122356899999999999999999996 99
Q ss_pred CCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCC
Q 018927 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 234 G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
|.|..+.|+++..+|.++|||||+|.+.++|..||+.|||..|+|+.|+|.++....
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999999999999999999999999999999999999999999999997654
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.7e-26 Score=225.17 Aligned_cols=174 Identities=19% Similarity=0.307 Sum_probs=144.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+.+|+++|+++|+.||.|..+.|+++..+|.++|||||+|.+.++|..|++.|+|..| .+..|+|
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~--~~~~l~v 369 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT--GDNKLHV 369 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999 4556666
Q ss_pred cccccCCCCCc-----------------------cccCCCcceeccCCCCC--C--------CHHHHHHHHhccCCCeee
Q 018927 192 NWATFSGSDRR-----------------------TEACSDLSIFVGDLAPD--V--------TDSILQETFSSKYPSVKG 238 (349)
Q Consensus 192 ~~~~~~~~~~~-----------------------~~~~~~~~l~V~nl~~~--~--------t~~~l~~~F~~~~G~v~~ 238 (349)
.++........ ....++.+|+|.|+... + ..++|+++|. .||.|++
T Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-~~G~v~~ 448 (509)
T TIGR01642 370 QRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-KYGPLIN 448 (509)
T ss_pred EECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-hcCCeeE
Confidence 66542211100 01224567899998532 1 2368999996 9999999
Q ss_pred eEEEEcC---CCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 239 AKVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 239 v~i~~d~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
|.|+++. .++..+|+|||+|++.++|++||..|||..|+|+.|.|.|...
T Consensus 449 v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 449 IVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9998753 3456689999999999999999999999999999999999765
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.4e-26 Score=209.39 Aligned_cols=172 Identities=29% Similarity=0.497 Sum_probs=148.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
.-+|+|+||||.|.+.+|+.+|+.||.|.+|.|.+.+ .|+..|||||.|.+..+|..||+.+|+..| .+++|.++|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 5689999999999999999999999999999999766 666669999999999999999999999999 7788999887
Q ss_pred ccCCCC-------------------------------------------C--------------c---------------
Q 018927 195 TFSGSD-------------------------------------------R--------------R--------------- 202 (349)
Q Consensus 195 ~~~~~~-------------------------------------------~--------------~--------------- 202 (349)
-.+..- . .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 511000 0 0
Q ss_pred -------------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHH
Q 018927 203 -------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (349)
Q Consensus 203 -------------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (349)
.......+|||+|||+++|+++|.++|+ .||.|.++.|+.++.|+.++|.|||.|.+..+|.+||+
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs-kFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS-KFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHH-hhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 0001125899999999999999999997 99999999999999999999999999999999999998
Q ss_pred Hh-----CC-eEeCCeeEEEEEcCCCC
Q 018927 270 EM-----NG-VYCSSRPMRIDVATPKK 290 (349)
Q Consensus 270 ~l-----~g-~~~~g~~i~v~~a~~~~ 290 (349)
.. .| ..|+||.|+|..|..+.
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchH
Confidence 77 24 67899999999998764
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.5e-26 Score=209.22 Aligned_cols=171 Identities=20% Similarity=0.350 Sum_probs=151.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
.||||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.+++.+|++.+.+..+ .++.+++..+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf--~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF--EGRILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc--cceeccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999888 56667776665
Q ss_pred cCCCCCc---------------------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEE
Q 018927 196 FSGSDRR---------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYG 254 (349)
Q Consensus 196 ~~~~~~~---------------------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~a 254 (349)
....... ....+..+|.|+|||+.+.+.+|+.+|+ .||.|.+|.|++..+ |+-.|||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs-~~G~V~Ei~IP~k~d-gklcGFa 161 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS-NFGKVVEIVIPRKKD-GKLCGFA 161 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh-hcceEEEEEcccCCC-CCccceE
Confidence 3322210 0122356899999999999999999998 999999999998766 5556999
Q ss_pred EEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCC
Q 018927 255 FVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 255 fV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
||.|.+..+|..||+.+|+..|+||+|-|.||.+|.
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 999999999999999999999999999999998875
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=5.6e-27 Score=198.30 Aligned_cols=150 Identities=23% Similarity=0.460 Sum_probs=135.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
-+|||||||.++++.+|+.+|++||+|.+|.|+++ |+||..++...++.||..|+|..| .+..|+|+-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL--hg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee--cceEEEEEecc
Confidence 37999999999999999999999999999999984 799999999999999999999999 45566665554
Q ss_pred cCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE
Q 018927 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (349)
Q Consensus 196 ~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (349)
.+ ...+++|||+||.+.++.+||+..| ++||.|.++.|++| |+||.|+..++|..|++.|++.+
T Consensus 73 sK-------sk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 73 SK-------SKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred cc-------CCCccccccCCCCccccCHHHhhhh-cccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 33 4466799999999999999999999 59999999999866 99999999999999999999999
Q ss_pred eCCeeEEEEEcCCCCC
Q 018927 276 CSSRPMRIDVATPKKA 291 (349)
Q Consensus 276 ~~g~~i~v~~a~~~~~ 291 (349)
|.|++++|.+++.+-+
T Consensus 137 ~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLR 152 (346)
T ss_pred cccceeeeeeeccccc
Confidence 9999999999988643
No 23
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=192.00 Aligned_cols=181 Identities=24% Similarity=0.456 Sum_probs=156.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC-CCCCCccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~-~~~~~~~i 189 (349)
...+.++||||.|...-.|||++.+|..||+|++|.+++.. +|.+||||||.|.+..+|..||..|+|.. +.|....+
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 33478899999999999999999999999999999999987 89999999999999999999999999864 55655566
Q ss_pred cccccccC------------------------------------------------------------------------
Q 018927 190 RLNWATFS------------------------------------------------------------------------ 197 (349)
Q Consensus 190 ~~~~~~~~------------------------------------------------------------------------ 197 (349)
.|.+++.+
T Consensus 94 VVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ang 173 (371)
T KOG0146|consen 94 VVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANG 173 (371)
T ss_pred EEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcc
Confidence 66555400
Q ss_pred --------------------------------------------------------------------------------
Q 018927 198 -------------------------------------------------------------------------------- 197 (349)
Q Consensus 198 -------------------------------------------------------------------------------- 197 (349)
T Consensus 174 l~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 174 LAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred cccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence
Q ss_pred -----------------C----CCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEE
Q 018927 198 -----------------G----SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256 (349)
Q Consensus 198 -----------------~----~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV 256 (349)
. .....+...++.|||..||.++.+.||...|. .||.|.+.+++.|+.|+.+|.|+||
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~-PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL-PFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc-cccceeeeeeeehhccccccceeeE
Confidence 0 00001233457899999999999999999997 9999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCCC
Q 018927 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 257 ~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~ 293 (349)
.|++..+|+.||..|||..|+-++|+|.+.++|...+
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 9999999999999999999999999999999987653
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=200.51 Aligned_cols=174 Identities=18% Similarity=0.365 Sum_probs=153.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
--|+||||.|.+++.|+.|+..|..||+|++|.+.+|..|+++||||||+|+-+|.|..|++.+||..+ .++.|++..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc--cCccccccC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 556677654
Q ss_pred cccCCCCCc------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHH
Q 018927 194 ATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (349)
Q Consensus 194 ~~~~~~~~~------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (349)
...-+.... .+...-.+|||..+.++++|+||+..| |.||+|.+|.+.+++..+.+|||+||+|.+..+-..|
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 332211111 233445689999999999999999999 5999999999999999899999999999999999999
Q ss_pred HHHhCCeEeCCeeEEEEEcCCCC
Q 018927 268 MTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 268 ~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
|..||-+.++|..|+|-.+....
T Consensus 269 iasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhhcchhhcccceEecccccCCC
Confidence 99999999999999998776554
No 25
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.92 E-value=8e-25 Score=194.02 Aligned_cols=175 Identities=26% Similarity=0.449 Sum_probs=148.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
+.++|||++|+|+++++.|+++|..||+|.+|.+++|+.+++++||+||+|.+.+...++|.. ..+.|+ ++.|....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~d--gr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLD--GRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccC--Ccccccee
Confidence 789999999999999999999999999999999999999999999999999999999999854 344453 34444433
Q ss_pred cccCCCCCc-cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 194 ATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
+.......+ .......+|||++||.++++++++++| ++||.|.++.++.|..+.+++||+||.|.+++++++++ ...
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~ 159 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQK 159 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceec-ccc
Confidence 333222211 111245689999999999999999999 59999999999999999999999999999999999988 778
Q ss_pred CeEeCCeeEEEEEcCCCCCCC
Q 018927 273 GVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 273 g~~~~g~~i~v~~a~~~~~~~ 293 (349)
-+.|+++.+.|+.|.++....
T Consensus 160 f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eeeecCceeeEeeccchhhcc
Confidence 899999999999999987654
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=3.7e-24 Score=206.06 Aligned_cols=168 Identities=20% Similarity=0.350 Sum_probs=140.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
.++|||+|||..+|+++|+++|+.||.|..|.++.+..+|+++|||||+|.+.++|.+|++.|+|..| .++.|+|.|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEEEEEc
Confidence 68999999999999999999999999999999999998999999999999999999999999999888 5677777774
Q ss_pred ccCCCC-----------------------------------C--------------------------------------
Q 018927 195 TFSGSD-----------------------------------R-------------------------------------- 201 (349)
Q Consensus 195 ~~~~~~-----------------------------------~-------------------------------------- 201 (349)
...... .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 210000 0
Q ss_pred --------c----cccCCCcceeccCCCCCCC----------HHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeC
Q 018927 202 --------R----TEACSDLSIFVGDLAPDVT----------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (349)
Q Consensus 202 --------~----~~~~~~~~l~V~nl~~~~t----------~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~ 259 (349)
. .......+|+|.||-...+ .+||++.|. +||.|++|.|.. ....|++||+|.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~-k~G~v~~v~v~~----~~~~G~~fV~F~ 418 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECS-KYGGVVHIYVDT----KNSAGKIYLKFS 418 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHH-hcCCeeEEEEeC----CCCceeEEEEEC
Confidence 0 0113446788888854433 368999996 999999998863 345799999999
Q ss_pred CHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 260 DENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 260 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
+.++|.+|++.|||..|+|+.|.|.|....
T Consensus 419 ~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred CHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999999999999999999999999998664
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5.2e-24 Score=195.59 Aligned_cols=155 Identities=29% Similarity=0.589 Sum_probs=143.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
..|||| +++||..|.++|+.+|+|++++|.+|. + +.|||||.|.++++|++||..+|...+ .++++++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 468999 999999999999999999999999998 6 999999999999999999999999999 88999999987
Q ss_pred cCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE
Q 018927 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (349)
Q Consensus 196 ~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (349)
.... .|||.||+++++.++|.++|+ .||.|.+|++.+|.+ | ++|| ||+|+++++|.+||+.+||..
T Consensus 74 rd~~----------~~~i~nl~~~~~~~~~~d~f~-~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 74 RDPS----------LVFIKNLDESIDNKSLYDTFS-EFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred cCCc----------eeeecCCCcccCcHHHHHHHH-hhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 5433 299999999999999999997 999999999999965 4 9999 999999999999999999999
Q ss_pred eCCeeEEEEEcCCCCCC
Q 018927 276 CSSRPMRIDVATPKKAS 292 (349)
Q Consensus 276 ~~g~~i~v~~a~~~~~~ 292 (349)
+.|+.|.|-....+..+
T Consensus 140 l~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEER 156 (369)
T ss_pred cCCCeeEEeeccchhhh
Confidence 99999999888877654
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=6.2e-24 Score=188.74 Aligned_cols=178 Identities=24% Similarity=0.437 Sum_probs=156.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCC-CCCCCCccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-LMPNTDQPFRL 191 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~-~~~~~~~~i~~ 191 (349)
.+.++||||-|+..+||.||+++|++||.|++|+|++|. .+.+||||||.|.+.+.|..||+.|||. .+.|...++.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 457899999999999999999999999999999999997 8999999999999999999999999986 47888899999
Q ss_pred cccccCCCCCc---------------------------------------------------------------------
Q 018927 192 NWATFSGSDRR--------------------------------------------------------------------- 202 (349)
Q Consensus 192 ~~~~~~~~~~~--------------------------------------------------------------------- 202 (349)
.|+++.+...-
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 88871100000
Q ss_pred --------------------------------------------------------------------------------
Q 018927 203 -------------------------------------------------------------------------------- 202 (349)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (349)
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence
Q ss_pred ----------------------------------------------------------cccCCCcceeccCCCCCCCHHH
Q 018927 203 ----------------------------------------------------------TEACSDLSIFVGDLAPDVTDSI 224 (349)
Q Consensus 203 ----------------------------------------------------------~~~~~~~~l~V~nl~~~~t~~~ 224 (349)
.+...+..|||.+||.+.-+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 0011122699999999999999
Q ss_pred HHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCC
Q 018927 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 225 l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 292 (349)
|...|. .||.|.+.++..|+.|+-+|.|+||.|++..+|.+||..|||..|+.++++|...+++...
T Consensus 441 l~~~f~-pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 441 LIATFQ-PFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred HHHHhc-cccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 999996 9999999999999999999999999999999999999999999999999999998876543
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=3.5e-23 Score=194.54 Aligned_cols=174 Identities=18% Similarity=0.363 Sum_probs=145.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~---g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
++|||.||++++|.++|...|...|.|.++.|.+.+.. -.|.|||||+|.+.++|..|++.|+|..|+|....+++.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988776522 135599999999999999999999999996666555554
Q ss_pred ccccCCC--CCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018927 193 WATFSGS--DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 193 ~~~~~~~--~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (349)
...+... .........++|+|+|||+..+..+|+++|. .||.|.+|+|+.....+.++|||||+|-+..+|.+|+++
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~-aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT-AFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHh-cccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 4221111 1112223356899999999999999999997 999999999998756677899999999999999999999
Q ss_pred hCCeEeCCeeEEEEEcCCCC
Q 018927 271 MNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 271 l~g~~~~g~~i~v~~a~~~~ 290 (349)
|....+.||.|.+.||+...
T Consensus 675 l~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hcccceechhhheehhccch
Confidence 99999999999999998754
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.89 E-value=1.4e-23 Score=192.23 Aligned_cols=176 Identities=22% Similarity=0.451 Sum_probs=149.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
..+..++||+--|....++.+|.+||+.+|.|.+|+++.|+.++++||.|||+|.|.+++-.|| .|.|..+. +.+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll--g~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL--GVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc--CceeE
Confidence 4457789999999999999999999999999999999999999999999999999999999999 68999884 44444
Q ss_pred ccccccCCCC--------C-ccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCH
Q 018927 191 LNWATFSGSD--------R-RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (349)
Q Consensus 191 ~~~~~~~~~~--------~-~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~ 261 (349)
+......... . ..-..+-.+|||+||..++++++|+.+| |.||.|+.|.+.+|..||.++||+||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecH
Confidence 4332211100 0 1112233349999999999999999999 5999999999999998999999999999999
Q ss_pred HHHHHHHHHhCCeEeCCeeEEEEEcCCCC
Q 018927 262 NERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 262 ~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
++|.+|++.|||.+|.||.|+|.....+-
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeec
Confidence 99999999999999999999998876654
No 31
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=3.6e-21 Score=154.47 Aligned_cols=86 Identities=34% Similarity=0.650 Sum_probs=80.9
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
..+++|||+||++++||++|+++|. .||.|++|+|++|+.+++++|||||+|++.++|++||+.||+..|+|+.|+|++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3566899999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 018927 286 ATPKKAS 292 (349)
Q Consensus 286 a~~~~~~ 292 (349)
++++...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9887654
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=1.5e-20 Score=180.73 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
..++|||+||++++++++|+++|+.||+|++++|.+|+.+|++||||||+|.+.++|.+|++.||+..|. ++.|+|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg--Gr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG--GQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC--CeEEEEEe
Confidence 4579999999999999999999999999999999999989999999999999999999999999999884 45555543
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.7e-21 Score=175.57 Aligned_cols=169 Identities=28% Similarity=0.451 Sum_probs=143.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccccC
Q 018927 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS 197 (349)
Q Consensus 118 l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~ 197 (349)
|||.||++++|..+|.++|+.||+|.+|++..+. +| +||| ||+|++.++|.+|++.+||..+.+....+-+...+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999997 56 9999 9999999999999999999999554444433322221
Q ss_pred CCCCc-cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe
Q 018927 198 GSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (349)
Q Consensus 198 ~~~~~-~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~ 276 (349)
..... .....-..++|.|++.+++++.|..+|. .+|.|.++.++.+.. ++++||+||.|++.++|..|++.|++..+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~-~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFS-AYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKIF 233 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhc-ccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCcC
Confidence 11111 1233345799999999999999999996 999999999999855 67999999999999999999999999999
Q ss_pred CCeeEEEEEcCCCCC
Q 018927 277 SSRPMRIDVATPKKA 291 (349)
Q Consensus 277 ~g~~i~v~~a~~~~~ 291 (349)
.+..+.|..+..+..
T Consensus 234 ~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 234 GDKELYVGRAQKKSE 248 (369)
T ss_pred Cccceeecccccchh
Confidence 999999999888543
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=8.2e-20 Score=145.22 Aligned_cols=160 Identities=19% Similarity=0.259 Sum_probs=128.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||.++-|.+|.++|-+||.|.+|.|..-. ....||||+|++..+|+.||..-+|..+++ ..++|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg--~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDG--CRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCc--ceEEEE
Confidence 567899999999999999999999999999999886543 334799999999999999999999999955 455555
Q ss_pred ccccCCCCC---------------------ccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcc
Q 018927 193 WATFSGSDR---------------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTK 251 (349)
Q Consensus 193 ~~~~~~~~~---------------------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~ 251 (349)
+........ ........+|.|.+||.+.+|.||++++. +-|+|....+.+|
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmR-eaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMR-EAGDVCFADVQRD------- 150 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHH-hhCCeeeeeeecc-------
Confidence 544221100 01223446899999999999999999997 8999999998877
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCeEeC--CeeEEEEE
Q 018927 252 GYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDV 285 (349)
Q Consensus 252 g~afV~F~~~~~A~~A~~~l~g~~~~--g~~i~v~~ 285 (349)
|++.|+|...|+-+-|+..|....+. |-..-+..
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 47999999999999999999987764 44444433
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.79 E-value=6.1e-19 Score=162.04 Aligned_cols=165 Identities=20% Similarity=0.339 Sum_probs=127.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccccc
Q 018927 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~ 196 (349)
.||||||+++++|++|+.+|+.||.|..|.+.+|..+|.+|||+||+|.+.++|.+|++.|||..| .++.|+|.....
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~v~~ 357 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSVVTE 357 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEEeee
Confidence 399999999999999999999999999999999999999999999999999999999999999766 666666532110
Q ss_pred CCCCC-------------------------------------------------------------------cccc----
Q 018927 197 SGSDR-------------------------------------------------------------------RTEA---- 205 (349)
Q Consensus 197 ~~~~~-------------------------------------------------------------------~~~~---- 205 (349)
.-... ....
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p 437 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASP 437 (549)
T ss_pred ecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccc
Confidence 00000 0000
Q ss_pred ---CCCcceeccCCCC--CCC--------HHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 206 ---CSDLSIFVGDLAP--DVT--------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 206 ---~~~~~l~V~nl~~--~~t--------~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
.++.++.+.|+=. ..| .+||.+.+. +||.|..|.|-+ + +-|+.||.|.+.++|..|+++||
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~-k~g~v~hi~vd~--n---s~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECG-KHGKVCHIFVDK--N---SAGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHH-hcCCeeEEEEcc--C---CCceEEEecCcHHHHHHHHHHHh
Confidence 1223455555421 111 167788886 999998776643 2 23999999999999999999999
Q ss_pred CeEeCCeeEEEEEcCCC
Q 018927 273 GVYCSSRPMRIDVATPK 289 (349)
Q Consensus 273 g~~~~g~~i~v~~a~~~ 289 (349)
|.+|.||.|.++|-...
T Consensus 512 grWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 512 GRWFAGRMITAKYLPLE 528 (549)
T ss_pred hhhhccceeEEEEeehh
Confidence 99999999999997553
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.79 E-value=3.2e-18 Score=152.73 Aligned_cols=174 Identities=18% Similarity=0.291 Sum_probs=142.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~-~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.....+.+||.|||+++.+.+|++||.. .|+|+.|.|+.|. +|+++|||.|||+++|.+++|++.|+.+.+.++...+
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 3445567999999999999999999975 7899999999997 8999999999999999999999999999995554444
Q ss_pred cccccc------------------------------------------cCCC--CCc-----------------------
Q 018927 190 RLNWAT------------------------------------------FSGS--DRR----------------------- 202 (349)
Q Consensus 190 ~~~~~~------------------------------------------~~~~--~~~----------------------- 202 (349)
+-+... +... +..
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 433221 0000 000
Q ss_pred -----------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 018927 203 -----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (349)
Q Consensus 203 -----------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (349)
.......++||.||.+.+..+.|++.|. -.|.|+.|.+-.|+. |.++|||.++|...-+|..||..|
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfg-mAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml 276 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFG-MAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISML 276 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhc-cceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhh
Confidence 0111234799999999999999999997 899999999999977 799999999999999999999999
Q ss_pred CCeEeCCeeEEEEEcC
Q 018927 272 NGVYCSSRPMRIDVAT 287 (349)
Q Consensus 272 ~g~~~~g~~i~v~~a~ 287 (349)
++.-+..++..+++..
T Consensus 277 ~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 277 DRQGLFDRRMTVRLDR 292 (608)
T ss_pred ccCCCccccceeeccc
Confidence 9877778888887744
No 37
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.78 E-value=1.4e-18 Score=158.89 Aligned_cols=85 Identities=28% Similarity=0.522 Sum_probs=79.8
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++||++|+++|. .||.|++|+|++|+.+++++|||||+|.++++|++||+.||+..|.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~-~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFR-TIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 344678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC
Q 018927 284 DVATPK 289 (349)
Q Consensus 284 ~~a~~~ 289 (349)
.++++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998763
No 38
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.78 E-value=8.9e-18 Score=138.85 Aligned_cols=162 Identities=22% Similarity=0.406 Sum_probs=137.3
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 115 TKTIWIGDLFHWMDETFLHN----CFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~----~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
..||||.||+..+..++|+. +|+.||.|.+|...+ +.+.+|-|||.|++.+.|..|++.|+|..+ .+++++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~mr 83 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPF--YGKPMR 83 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcc--cCchhh
Confidence 34999999999999999998 999999999997776 567889999999999999999999999988 778888
Q ss_pred ccccccCCCCC---------------------------------------------ccccCCCcceeccCCCCCCCHHHH
Q 018927 191 LNWATFSGSDR---------------------------------------------RTEACSDLSIFVGDLAPDVTDSIL 225 (349)
Q Consensus 191 ~~~~~~~~~~~---------------------------------------------~~~~~~~~~l~V~nl~~~~t~~~l 225 (349)
+.|++.+...- .....+...||+.|||.+++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 87766321100 011345678999999999999999
Q ss_pred HHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC-CeeEEEEEcC
Q 018927 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (349)
Q Consensus 226 ~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~ 287 (349)
..+|. .|.....|+++.. .++.|||+|.+...|..|...+.+..|- ...+.|.+++
T Consensus 164 ~~lf~-qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFE-QFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHh-hCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99995 9999999999864 3479999999999999999999998886 8888888875
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=6.6e-18 Score=153.31 Aligned_cols=166 Identities=20% Similarity=0.254 Sum_probs=126.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
.....|.+++|||++|++||.+||+.|+ |+++.+.+. +|+..|-|||+|.+.+++++|+++ +...+ ..+-|.|-
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m--g~RYIEVf 81 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESM--GHRYIEVF 81 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHh--CCceEEEE
Confidence 4556788999999999999999999995 788766664 789999999999999999999964 66555 45555554
Q ss_pred ccccCCCCCc------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeee-eEEEEcCCCCCcceEEEEEeCCHHHHH
Q 018927 193 WATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERS 265 (349)
Q Consensus 193 ~~~~~~~~~~------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~-v~i~~d~~~~~~~g~afV~F~~~~~A~ 265 (349)
.+.....+.. ........|.+++||+.+|++||.+||+ -.-.|.. |-++.|. .+++.|-|||.|++.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFa-GL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFA-GLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhc-CCcccccceeeeccC-CCCcccceEEEecCHHHHH
Confidence 3322211111 1113456899999999999999999996 5544444 3345554 4789999999999999999
Q ss_pred HHHHHhCCeEeCCeeEEEEEcC
Q 018927 266 RAMTEMNGVYCSSRPMRIDVAT 287 (349)
Q Consensus 266 ~A~~~l~g~~~~g~~i~v~~a~ 287 (349)
+|| .-|...|+-|.|.|-.+.
T Consensus 160 ~Al-~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 160 IAL-GRHRENIGHRYIEVFRSS 180 (510)
T ss_pred HHH-HHHHHhhccceEEeehhH
Confidence 999 556688888999887654
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=1.2e-17 Score=134.04 Aligned_cols=84 Identities=32% Similarity=0.536 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+||++++||++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++|++.|++..| .++.|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 45677999999999999999999999999999999999999999999999999999999999999999998 5678888
Q ss_pred cccccC
Q 018927 192 NWATFS 197 (349)
Q Consensus 192 ~~~~~~ 197 (349)
+|+...
T Consensus 109 ~~a~~~ 114 (144)
T PLN03134 109 NPANDR 114 (144)
T ss_pred EeCCcC
Confidence 887644
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=4.7e-17 Score=153.67 Aligned_cols=170 Identities=21% Similarity=0.322 Sum_probs=133.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
.+..+.++|+|||..+..++|..+|..||+|..+.+... | --++|+|.+..+|..|.+.|....+ ...++.+
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~--k~~plyl 453 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRF--KSAPLYL 453 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhh--ccCcccc
Confidence 345678999999999999999999999999999944422 1 2399999999999999999988776 4445555
Q ss_pred cccccCCCC--------------C-------c------------------------cccCCCcceeccCCCCCCCHHHHH
Q 018927 192 NWATFSGSD--------------R-------R------------------------TEACSDLSIFVGDLAPDVTDSILQ 226 (349)
Q Consensus 192 ~~~~~~~~~--------------~-------~------------------------~~~~~~~~l~V~nl~~~~t~~~l~ 226 (349)
.|+....-. . + ......++|||.||++++|.++|.
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~ 533 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLE 533 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHH
Confidence 554311000 0 0 000111349999999999999999
Q ss_pred HHHhccCCCeeeeEEEEcCCCC---CcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCC
Q 018927 227 ETFSSKYPSVKGAKVIIDSNTG---RTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 227 ~~F~~~~G~v~~v~i~~d~~~~---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
.+|. ..|.|.++.|.+.++.. .+.|||||+|.+.++|.+|++.|+|+.|+|+.|.|+++..+.
T Consensus 534 ~~F~-k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~ 599 (725)
T KOG0110|consen 534 DLFS-KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKP 599 (725)
T ss_pred HHHH-hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcc
Confidence 9997 99999999988765421 345999999999999999999999999999999999999433
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.74 E-value=1.8e-16 Score=137.99 Aligned_cols=174 Identities=17% Similarity=0.289 Sum_probs=138.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~--------~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~ 181 (349)
..+...+.|||.|||.++|.+++.++|++||-|. .|+|+++. .|..||-|.|.|...++++.|+..|++..
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccc
Confidence 3455667799999999999999999999999765 48999997 69999999999999999999999999999
Q ss_pred CCCCCccccccccccCCCC---------------------------------CccccCCCcceeccCCCC----CCC---
Q 018927 182 MPNTDQPFRLNWATFSGSD---------------------------------RRTEACSDLSIFVGDLAP----DVT--- 221 (349)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~---------------------------------~~~~~~~~~~l~V~nl~~----~~t--- 221 (349)
+ .++.|+|..+++.... ........++|.|.|+=. ..+
T Consensus 208 ~--rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l 285 (382)
T KOG1548|consen 208 L--RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDL 285 (382)
T ss_pred c--cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHH
Confidence 9 5777888766532110 111223446788888622 223
Q ss_pred ----HHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCC
Q 018927 222 ----DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (349)
Q Consensus 222 ----~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 291 (349)
.++|++.+. +||.|.+|.|. | ..+.|.+.|.|.+.++|..||..|+|.+|+||.|...+...+..
T Consensus 286 ~~dlkedl~eec~-K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 286 LNDLKEDLTEECE-KFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHHHHH-HhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 366777785 99999998776 2 35679999999999999999999999999999999988766543
No 43
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=2.8e-17 Score=158.16 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHhCCCCCCCCCccccccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcC
Q 018927 166 SRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS 245 (349)
Q Consensus 166 ~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~ 245 (349)
-.++|.+||..++|..+. .......+..+.+..........++|||+|||.+++|++|+++|+ .||.|.+|+|++|
T Consensus 18 ~~~~a~~a~~~~~gy~~~--~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~-~~G~I~~vrl~~D- 93 (578)
T TIGR01648 18 PDEAALKALLERTGYTLV--QENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFE-KAGPIYELRLMMD- 93 (578)
T ss_pred ccHHHHHHHHHhhCcccc--ccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHH-hhCCEEEEEEEEC-
Confidence 467888999888998773 333333333322222222234568999999999999999999996 9999999999999
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC-CeeEEEEEc
Q 018927 246 NTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVA 286 (349)
Q Consensus 246 ~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~v~~a 286 (349)
.++++||||||+|.+.++|++||+.||+..|. |+.|.|.++
T Consensus 94 ~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 94 FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 78999999999999999999999999999885 777777653
No 44
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=5.1e-18 Score=141.75 Aligned_cols=152 Identities=20% Similarity=0.366 Sum_probs=127.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
..|||++|++.+.+.+|..||..||.|.++.+.. ||+||+|.+..+|..|+..+++..|.+.. +.++|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4799999999999999999999999999997754 78999999999999999999999996655 7777776
Q ss_pred cC------CCC--C-------ccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCC
Q 018927 196 FS------GSD--R-------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (349)
Q Consensus 196 ~~------~~~--~-------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~ 260 (349)
.. ... . .......+.|.|.++...+.+.+|.+.|. .+|.+....+ .++++||+|.+
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~-~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR-PAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc-ccCCCchhhh--------hccccceeehh
Confidence 32 110 0 01133456788999999999999999996 9999854433 35689999999
Q ss_pred HHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 261 ENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 261 ~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
.++|.+|++.|++..+.++.|++...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999444
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.72 E-value=2.9e-16 Score=128.79 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=120.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEe-cCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC-CCcc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-NKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQP 188 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~-~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~-~~~~ 188 (349)
.....+||||.+||.++...+|..+|..|--.+.+.|.. ++...-.+-+|||.|.+...|.+|+..|||..++- ....
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 456789999999999999999999999986666665544 33333456899999999999999999999998853 2344
Q ss_pred ccccccccCCCCCc------------------------------------------------------------------
Q 018927 189 FRLNWATFSGSDRR------------------------------------------------------------------ 202 (349)
Q Consensus 189 i~~~~~~~~~~~~~------------------------------------------------------------------ 202 (349)
++++.++......+
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 55544441110000
Q ss_pred ---------------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHH
Q 018927 203 ---------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (349)
Q Consensus 203 ---------------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (349)
.......+|||.||..++||++|+.+|+ .|.....++|.-. | ....|||+|++.+.|..|
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~-~~~gf~~l~~~~~---~-g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLS-RYPGFHILKIRAR---G-GMPVAFADFEEIEQATDA 264 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHH-hCCCceEEEEecC---C-CcceEeecHHHHHHHHHH
Confidence 0001123899999999999999999997 9988776666532 1 234899999999999999
Q ss_pred HHHhCCeEe
Q 018927 268 MTEMNGVYC 276 (349)
Q Consensus 268 ~~~l~g~~~ 276 (349)
+..|.|..|
T Consensus 265 m~~lqg~~~ 273 (284)
T KOG1457|consen 265 MNHLQGNLL 273 (284)
T ss_pred HHHhhccee
Confidence 999998776
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.2e-16 Score=141.65 Aligned_cols=123 Identities=21% Similarity=0.307 Sum_probs=94.3
Q ss_pred EeCCHHHHHHHHHHhCCCCCCCCCccccccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEE
Q 018927 163 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI 242 (349)
Q Consensus 163 ~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~ 242 (349)
...+.++|.++|..-.|..|.-..- ...+..+.+..........+.|||+.||.++.|++|.-+| |+.|+|.+++|+
T Consensus 40 ~~~~~eaal~al~E~tgy~l~ve~g--qrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplf-EkiG~I~elRLM 116 (506)
T KOG0117|consen 40 GVQSEEAALKALLERTGYTLVVENG--QRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLF-EKIGKIYELRLM 116 (506)
T ss_pred ccccHHHHHHHHHHhcCceEEEecc--ccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHH-HhccceeeEEEe
Confidence 3445677888876655544421110 0011111122222233566789999999999999999999 599999999999
Q ss_pred EcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC-CeeEEEEEcCC
Q 018927 243 IDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATP 288 (349)
Q Consensus 243 ~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~~ 288 (349)
+|+.+|.+||||||+|.+.++|++||+.||+++|. |+.|.|+.+..
T Consensus 117 mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 117 MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 99999999999999999999999999999999996 99999999766
No 47
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=9.8e-17 Score=133.42 Aligned_cols=82 Identities=24% Similarity=0.504 Sum_probs=79.5
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
...+|.|.||+.+++|++|+++|. +||.|.+|.|.+|++||.+||||||.|.+.++|.+||+.|||.-++.-.|+|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~-~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFR-PFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhh-ccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 567899999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 018927 287 TPK 289 (349)
Q Consensus 287 ~~~ 289 (349)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 48
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=2.9e-17 Score=136.05 Aligned_cols=82 Identities=35% Similarity=0.531 Sum_probs=75.5
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
..-++|||++|+|+++.|+|+++| |+||+|++..|+.|+.++++|||+||+|.|.|+|.+||+..| -.|+||+..|++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 345689999999999999999999 599999999999999999999999999999999999996655 679999999999
Q ss_pred cCCC
Q 018927 286 ATPK 289 (349)
Q Consensus 286 a~~~ 289 (349)
|.-.
T Consensus 88 A~lg 91 (247)
T KOG0149|consen 88 ASLG 91 (247)
T ss_pred hhhc
Confidence 8773
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.68 E-value=3e-16 Score=110.45 Aligned_cols=70 Identities=37% Similarity=0.780 Sum_probs=66.9
Q ss_pred eeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
|||+|||.++|+++|+++|+ .||.|..+.+..+ .++..+|+|||+|++.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFS-QFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHH-TTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHH-Hhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999997 8999999999998 6689999999999999999999999999999999986
No 50
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3e-16 Score=130.51 Aligned_cols=86 Identities=29% Similarity=0.456 Sum_probs=80.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
...++.++|.|.||+.+++|++|++||.+||.|..|.|.+|+.||.+||||||.|.++++|.+||+.|+|.-+ ..+.+
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LIL 261 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLIL 261 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEE
Confidence 3445888999999999999999999999999999999999999999999999999999999999999999877 77899
Q ss_pred cccccccC
Q 018927 190 RLNWATFS 197 (349)
Q Consensus 190 ~~~~~~~~ 197 (349)
+++|++++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99998864
No 51
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=1.9e-16 Score=136.90 Aligned_cols=84 Identities=23% Similarity=0.426 Sum_probs=76.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+...|-||+.+|. +||.|.+|+|+++. ..+||||||+|++.+||++|-++|||..++||+|+|+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~-kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFE-KFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHH-hhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34456899999999999999999995 99999999999873 4689999999999999999999999999999999999
Q ss_pred EcCCCCC
Q 018927 285 VATPKKA 291 (349)
Q Consensus 285 ~a~~~~~ 291 (349)
.|+.+-.
T Consensus 170 ~ATarV~ 176 (376)
T KOG0125|consen 170 NATARVH 176 (376)
T ss_pred ccchhhc
Confidence 9988643
No 52
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.67 E-value=1.6e-16 Score=128.82 Aligned_cols=84 Identities=26% Similarity=0.435 Sum_probs=79.3
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
.-+.|.|-||.+.++.++|+.+| |+||.|.+|.|+.|+.|+.++|||||.|.+..+|+.|+++|+|..|+|+.|+|.+|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvF-ekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVF-EKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecceeccCCHHHHHHHH-HHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34579999999999999999999 59999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 018927 287 TPKKA 291 (349)
Q Consensus 287 ~~~~~ 291 (349)
+-...
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 87655
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.65 E-value=4.2e-15 Score=132.97 Aligned_cols=72 Identities=28% Similarity=0.427 Sum_probs=66.2
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
++|||+|||.++||..|++.|. .||.|.++.|+ +.|+++| .|.|.++++|++||..|+|..++||.|+|+|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfr-e~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFR-EIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHH-hccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4799999999999999999997 89999999985 3477776 99999999999999999999999999999874
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.7e-15 Score=141.26 Aligned_cols=180 Identities=16% Similarity=0.320 Sum_probs=135.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......+++||++||..++++.++++++.||++....+++|..+|.+|||||.+|.+......|+..|||+.+.+....
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999998554444
Q ss_pred ccccccccCCCCC-----------------ccccCCCcceeccCCC--CCC-CH-------HHHHHHHhccCCCeeeeEE
Q 018927 189 FRLNWATFSGSDR-----------------RTEACSDLSIFVGDLA--PDV-TD-------SILQETFSSKYPSVKGAKV 241 (349)
Q Consensus 189 i~~~~~~~~~~~~-----------------~~~~~~~~~l~V~nl~--~~~-t~-------~~l~~~F~~~~G~v~~v~i 241 (349)
+............ .....+...|.+.|+= .++ .+ |+++..|+ +||.|.+|.|
T Consensus 363 vq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~-k~g~v~~v~i 441 (500)
T KOG0120|consen 363 VQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA-KFGAVRSVEI 441 (500)
T ss_pred eehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc-ccCceeEEec
Confidence 3332221110000 0111223344444431 111 11 45667776 8999999999
Q ss_pred EEc-C--CCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 242 IID-S--NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 242 ~~d-~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
.++ . ......|..||+|++.+++++|+++|+|..|.+|.|...|-...
T Consensus 442 pr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 442 PRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 877 2 22244678999999999999999999999999999999987653
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=6.8e-16 Score=127.99 Aligned_cols=81 Identities=27% Similarity=0.469 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.+..-++||||+|+|++..|+|+++|++||+|++..|+.|+.+|++|||+||+|+|.++|.+|++.-+ -.|+|+.-.++
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccc
Confidence 44566799999999999999999999999999999999999999999999999999999999997643 44655554454
Q ss_pred cc
Q 018927 191 LN 192 (349)
Q Consensus 191 ~~ 192 (349)
+.
T Consensus 87 lA 88 (247)
T KOG0149|consen 87 LA 88 (247)
T ss_pred hh
Confidence 43
No 56
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=3.8e-15 Score=130.41 Aligned_cols=171 Identities=17% Similarity=0.289 Sum_probs=129.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
.-.+|||..++++.+|+||+..|+.||+|+.|.+-++...+.+|||+||+|.+..+-..|+..+|-..+ .+.-+|+..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL--GGQyLRVGk 286 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGK 286 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--ccceEeccc
Confidence 456899999999999999999999999999999999998899999999999999999999998887766 334444322
Q ss_pred ccc-----------------------------------------------------------------------------
Q 018927 194 ATF----------------------------------------------------------------------------- 196 (349)
Q Consensus 194 ~~~----------------------------------------------------------------------------- 196 (349)
.-.
T Consensus 287 ~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~ 366 (544)
T KOG0124|consen 287 CVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVIT 366 (544)
T ss_pred ccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceec
Confidence 110
Q ss_pred ---------------------------------CCCCCc-----------------------------------cccCCC
Q 018927 197 ---------------------------------SGSDRR-----------------------------------TEACSD 208 (349)
Q Consensus 197 ---------------------------------~~~~~~-----------------------------------~~~~~~ 208 (349)
+..... .....+
T Consensus 367 ~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S 446 (544)
T KOG0124|consen 367 GVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQES 446 (544)
T ss_pred cCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccC
Confidence 000000 001122
Q ss_pred cceeccCC--CCCCC---HHHHHHHHhccCCCeeeeEEEEcCCCCCc----ceEEEEEeCCHHHHHHHHHHhCCeEeCCe
Q 018927 209 LSIFVGDL--APDVT---DSILQETFSSKYPSVKGAKVIIDSNTGRT----KGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (349)
Q Consensus 209 ~~l~V~nl--~~~~t---~~~l~~~F~~~~G~v~~v~i~~d~~~~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 279 (349)
+.|.++|+ |.+++ +.+|.+.|+ +||.|.+|.|...+.++.. ----||+|....++.+|+.+|+|..|+||
T Consensus 447 ~VivLRNMV~P~DiDe~LegEi~EECg-KfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr 525 (544)
T KOG0124|consen 447 TVIVLRNMVDPKDIDEDLEGEITEECG-KFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGR 525 (544)
T ss_pred cEEEEeccCChhhhhhHHHHHHHHHHh-cccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCc
Confidence 34666775 44444 468899997 9999999988876554421 12479999999999999999999999999
Q ss_pred eEEEEEcC
Q 018927 280 PMRIDVAT 287 (349)
Q Consensus 280 ~i~v~~a~ 287 (349)
++..+.-+
T Consensus 526 ~VvAE~YD 533 (544)
T KOG0124|consen 526 KVVAEVYD 533 (544)
T ss_pred eeehhhhh
Confidence 98776543
No 57
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.64 E-value=4.4e-15 Score=131.87 Aligned_cols=162 Identities=14% Similarity=0.289 Sum_probs=130.6
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 115 TKTIWIGDLF-HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 115 ~~~l~V~nLp-~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
++.|.|.||. ..+|++-|..+|.-||+|..|+|+.++. --|.|.|.|...|..|++.|+|..| +++.|++.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l--~gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKL--YGKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhccee--cCceEEEee
Confidence 6889999997 6799999999999999999999998875 3699999999999999999999999 668888877
Q ss_pred cccCCC------CCc------------------------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEE
Q 018927 194 ATFSGS------DRR------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII 243 (349)
Q Consensus 194 ~~~~~~------~~~------------------------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~ 243 (349)
++...- .+. ....++.+|++.|+|.+++||+|++.|.+.-+.|+..++.
T Consensus 370 SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff- 448 (492)
T KOG1190|consen 370 SKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF- 448 (492)
T ss_pred ccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-
Confidence 662210 000 0123456899999999999999999998444444444433
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC-CeeEEEEEcCC
Q 018927 244 DSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATP 288 (349)
Q Consensus 244 d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~~ 288 (349)
++.+-+|++.+++.|+|..|+-.+|.+.++ +..|+|+|++.
T Consensus 449 ----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 ----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 233459999999999999999999999997 55999999875
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=3.5e-15 Score=105.10 Aligned_cols=70 Identities=29% Similarity=0.665 Sum_probs=64.9
Q ss_pred eeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
|||+|||+++++++|+++|+ .||.|..+++..++. +..+|+|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~-~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFS-RFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCT-TSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999996 999999999999977 89999999999999999999999999999999985
No 59
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2.3e-15 Score=119.18 Aligned_cols=80 Identities=24% Similarity=0.487 Sum_probs=73.4
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
-.++|||+||+..+++.||+.+|. .||.|.+|.|... ..|||||||++..||+.|+..|+|+.|+|..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~-~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFS-KYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHH-hcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 356899999999999999999997 9999999998864 4699999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018927 287 TPKKAS 292 (349)
Q Consensus 287 ~~~~~~ 292 (349)
+-+...
T Consensus 83 ~G~~r~ 88 (195)
T KOG0107|consen 83 TGRPRG 88 (195)
T ss_pred cCCccc
Confidence 887653
No 60
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=6.1e-15 Score=132.12 Aligned_cols=151 Identities=23% Similarity=0.357 Sum_probs=116.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
.++|||+|||+++|+++|+++|..||.|..+.+..|+.+++++|||||+|.+.++|..|+..+++..+ .++.+++.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999 5566666663
Q ss_pred c----cCCCCC---------------ccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEE
Q 018927 195 T----FSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255 (349)
Q Consensus 195 ~----~~~~~~---------------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~af 255 (349)
. ...... .........+++.+++..++..++...|. .+|.+..+.+...........+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK-SRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc-ccccceeeeccCCCCCcccccccc
Confidence 2 111111 11223446799999999999999999996 999997777665544333334444
Q ss_pred EEeCCHHHHHHHH
Q 018927 256 VRFGDENERSRAM 268 (349)
Q Consensus 256 V~F~~~~~A~~A~ 268 (349)
+.+.....+...+
T Consensus 272 ~~~~~~~~~~~~~ 284 (306)
T COG0724 272 VGNEASKDALESN 284 (306)
T ss_pred cchhHHHhhhhhh
Confidence 4444444444444
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=114.43 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=77.2
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
..+++|||+||+..++||.|.++|+ ++|+|..|.+-.|+.+..+.|||||+|.+.++|..|++-++|..++.++|+|.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs-~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFS-KCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHH-hccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 4567999999999999999999998 999999999989999999999999999999999999999999999999999999
Q ss_pred cCC
Q 018927 286 ATP 288 (349)
Q Consensus 286 a~~ 288 (349)
.--
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 654
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.4e-15 Score=114.11 Aligned_cols=83 Identities=28% Similarity=0.560 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
....+++||||||++.++|+.|.++|+++|+|..|.+-.|+.+...-|||||+|.+.++|+.|++.+++..+ ..++|+
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir 109 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIR 109 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--ccccee
Confidence 346789999999999999999999999999999999999998989999999999999999999999999999 678888
Q ss_pred ccccc
Q 018927 191 LNWAT 195 (349)
Q Consensus 191 ~~~~~ 195 (349)
++|..
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 88864
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.61 E-value=9.6e-16 Score=122.06 Aligned_cols=80 Identities=30% Similarity=0.524 Sum_probs=77.0
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
...+|||+||+..++++.|+++|- ..|.|.++++++|+.+...+|||||+|.++|+|+-||+.||...+-||+|+|+.+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~i-qagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFI-QAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHH-hcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 446999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 018927 287 T 287 (349)
Q Consensus 287 ~ 287 (349)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.61 E-value=3.4e-15 Score=128.21 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=71.7
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcC
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 287 (349)
.++|||+||++.+|+++|+++|+ .||.|++|+|+.|+. ++|||||+|++.++|+.|| .|||..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS-~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFS-FSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 46899999999999999999997 999999999998853 5799999999999999999 699999999999999987
Q ss_pred CCC
Q 018927 288 PKK 290 (349)
Q Consensus 288 ~~~ 290 (349)
.-.
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 543
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=3.2e-15 Score=105.13 Aligned_cols=66 Identities=38% Similarity=0.659 Sum_probs=62.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 118 l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
|||+|||+++|+++|+++|+.||.|..+++..+ .++..+++|||+|.+.++|++|++.++|..+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999998 588999999999999999999999999988843
No 66
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=6.3e-15 Score=117.53 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=72.1
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
.+++|||+|||.++.+.||.++|. +||.|..|.+... .....||||+|++..+|+.||..-+|..++|..|+|+|+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFy-Kyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFY-KYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHh-hhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999997 9999999987533 234679999999999999999999999999999999998
Q ss_pred CCCCC
Q 018927 287 TPKKA 291 (349)
Q Consensus 287 ~~~~~ 291 (349)
.....
T Consensus 81 rggr~ 85 (241)
T KOG0105|consen 81 RGGRS 85 (241)
T ss_pred cCCCc
Confidence 77653
No 67
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.2e-14 Score=124.27 Aligned_cols=89 Identities=27% Similarity=0.542 Sum_probs=82.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+-+||||+-|+++++|.+|++.|. .||.|+.|+|+.|..||+++|||||+|+++.+...|.+..+|..|+|+.|.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~-~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFE-KYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHH-hcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 46778999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCc
Q 018927 285 VATPKKASGY 294 (349)
Q Consensus 285 ~a~~~~~~~~ 294 (349)
+-..+.-.+.
T Consensus 177 vERgRTvkgW 186 (335)
T KOG0113|consen 177 VERGRTVKGW 186 (335)
T ss_pred eccccccccc
Confidence 9877654443
No 68
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=2.5e-13 Score=119.47 Aligned_cols=173 Identities=18% Similarity=0.171 Sum_probs=132.0
Q ss_pred CCCCCCCeEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 110 FTNDETKTIWIGDLF-HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp-~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
......+.++|.+|. ..++.+.|..+|..||.|..|++++.+. |.|.|++-|..+.++|+..|++..+.|....
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 445677899999998 5778999999999999999999999874 7899999999999999999999988554444
Q ss_pred cccccccc-------------------CC-----------CCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeee
Q 018927 189 FRLNWATF-------------------SG-----------SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG 238 (349)
Q Consensus 189 i~~~~~~~-------------------~~-----------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~ 238 (349)
+.+..... .. ..+..-..++++|+.-|.|..+||+.|.++|.++--...+
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 43322110 00 0001223456789999999999999999999854444567
Q ss_pred eEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCe------eEEEEEcCCC
Q 018927 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR------PMRIDVATPK 289 (349)
Q Consensus 239 v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~------~i~v~~a~~~ 289 (349)
|+|+..+ +.++ .-+++||++.++|..||..||...|.+. .|++.|++++
T Consensus 437 vkvFp~k-serS-ssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 437 VKVFPLK-SERS-SSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred EEeeccc-cccc-ccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 7777654 3333 3589999999999999999999888643 4666776664
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1e-14 Score=126.25 Aligned_cols=92 Identities=23% Similarity=0.413 Sum_probs=77.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 107 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
.+....+..++|+|+|||+.+-|-||+.+|++||+|.+|.|+.+. .-+|||+||+|++.++|++|.++|||..+ .+
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~V--EG 163 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVV--EG 163 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhccee--ec
Confidence 334456778899999999999999999999999999999999863 46899999999999999999999999999 66
Q ss_pred ccccccccccCCCCCc
Q 018927 187 QPFRLNWATFSGSDRR 202 (349)
Q Consensus 187 ~~i~~~~~~~~~~~~~ 202 (349)
|+|+|+.+...-...+
T Consensus 164 RkIEVn~ATarV~n~K 179 (376)
T KOG0125|consen 164 RKIEVNNATARVHNKK 179 (376)
T ss_pred eEEEEeccchhhccCC
Confidence 7777776654433333
No 70
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-15 Score=123.84 Aligned_cols=85 Identities=27% Similarity=0.597 Sum_probs=81.0
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||++|..++||..|...|- .||+|.+|.++.|.++.++||||||+|+..|+|..||+.||+.+|.||.|+|.+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFI-PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFI-PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccc-cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 456999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018927 287 TPKKAS 292 (349)
Q Consensus 287 ~~~~~~ 292 (349)
+|.+-.
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 997654
No 71
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=3.8e-16 Score=124.13 Aligned_cols=82 Identities=26% Similarity=0.509 Sum_probs=76.9
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
.+.-|||+|||+++||.||..+|+ .||+|++|.+++|++||+++||||+.|++..+..-|+..|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFS-qyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFS-QYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEee-ccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 345799999999999999999997 9999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 018927 287 TPK 289 (349)
Q Consensus 287 ~~~ 289 (349)
..-
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 543
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=1.6e-14 Score=131.15 Aligned_cols=79 Identities=19% Similarity=0.403 Sum_probs=72.7
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCH--HHHHHHHHHhCCeEeCCeeEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE--NERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~--~~A~~A~~~l~g~~~~g~~i~v 283 (349)
....+||||||++.+++++|+.+|. .||.|.+|.|+ +.+| ||||||+|.+. .++.+||..|||..+.||.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFS-eFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFS-PMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3457899999999999999999997 99999999999 4566 89999999987 7899999999999999999999
Q ss_pred EEcCCC
Q 018927 284 DVATPK 289 (349)
Q Consensus 284 ~~a~~~ 289 (349)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999885
No 73
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.54 E-value=1.2e-13 Score=122.92 Aligned_cols=167 Identities=17% Similarity=0.344 Sum_probs=135.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~-afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
..--.++|.++-+.++-|-|..+|++||.|..|.-.... + +| |.|.|.+.+.|..|...|+|..|......+|+
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn-n----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN-N----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc-c----chhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 344567899999999999999999999999887555433 2 44 89999999999999999999999888888888
Q ss_pred cccccCCC------------------CC---------------------------------------ccccC-CCcceec
Q 018927 192 NWATFSGS------------------DR---------------------------------------RTEAC-SDLSIFV 213 (349)
Q Consensus 192 ~~~~~~~~------------------~~---------------------------------------~~~~~-~~~~l~V 213 (349)
++++...- .. +.+.. .+..|.|
T Consensus 223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv 302 (492)
T KOG1190|consen 223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV 302 (492)
T ss_pred ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE
Confidence 87761100 00 00000 1356788
Q ss_pred cCCCC-CCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCC
Q 018927 214 GDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 214 ~nl~~-~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
.||.. .+|.+.|..+|+ .||+|.+|+|+..+. --|+|.+.|...|+-|++.|+|..+.|++|+|.+++-..
T Consensus 303 snln~~~VT~d~LftlFg-vYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 303 SNLNEEAVTPDVLFTLFG-VYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ecCchhccchhHHHHHHh-hhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 88864 689999999997 999999999998753 369999999999999999999999999999999997643
No 74
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=110.14 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=82.0
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
......|||.++...+||++|.+.|. .||+|+++++..|+.||..||||+|+|++.++|.+|++.+||..|.|..|.|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~-dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFA-DYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHh-hcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 33456899999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
|+-.+.+.+
T Consensus 148 w~Fv~gp~~ 156 (170)
T KOG0130|consen 148 WCFVKGPER 156 (170)
T ss_pred EEEecCCcc
Confidence 998776644
No 75
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.3e-14 Score=118.89 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=71.4
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+||++.+|+++|+++|+ .||+|.+|+|++|. +.++||||+|++.++|+.|+ .|+|..|.++.|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS-~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFS-HCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHH-hcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 357999999999999999999997 99999999999884 45689999999999999999 99999999999999987
Q ss_pred CCC
Q 018927 287 TPK 289 (349)
Q Consensus 287 ~~~ 289 (349)
...
T Consensus 79 ~~y 81 (243)
T PLN03121 79 GQY 81 (243)
T ss_pred ccc
Confidence 653
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3.3e-14 Score=112.68 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++||||||+..+++.||...|..||+|.+|+|-..+. |||||||+++.+|+.|+..|+|+.| .+..++|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccc--cCceEEEE
Confidence 4578999999999999999999999999999999988653 9999999999999999999999999 45555555
Q ss_pred ccc
Q 018927 193 WAT 195 (349)
Q Consensus 193 ~~~ 195 (349)
.+.
T Consensus 81 ~S~ 83 (195)
T KOG0107|consen 81 LST 83 (195)
T ss_pred eec
Confidence 544
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=5.1e-14 Score=99.09 Aligned_cols=66 Identities=38% Similarity=0.591 Sum_probs=60.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 118 l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
|||+|||+++++++|+++|+.||.|..+++..++. +..+++|||+|.+.++|.+|++.+++..+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999999986 8999999999999999999999988787743
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.9e-13 Score=117.48 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=67.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
.++|||+||++.+||++|+++|+.||+|.+|+|++|+. .+|||||+|.+.++|+.|| .|+|..| .++.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCee--CCceEEEEec
Confidence 57999999999999999999999999999999998863 4699999999999999999 5999999 6777787776
Q ss_pred c
Q 018927 195 T 195 (349)
Q Consensus 195 ~ 195 (349)
.
T Consensus 78 ~ 78 (260)
T PLN03120 78 E 78 (260)
T ss_pred c
Confidence 5
No 79
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=9.6e-14 Score=100.31 Aligned_cols=81 Identities=17% Similarity=0.332 Sum_probs=73.0
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
...+.|||+|||+++|.|+..++|. +||.|..|+|-..+ ..+|.|||.|++..+|.+|++.|+|..++++.|.|-+
T Consensus 16 evnriLyirNLp~~ITseemydlFG-kyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFG-KYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhh-cccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3456899999999999999999997 99999999987554 4689999999999999999999999999999999998
Q ss_pred cCCCC
Q 018927 286 ATPKK 290 (349)
Q Consensus 286 a~~~~ 290 (349)
-.+.+
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 77654
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=1.4e-13 Score=96.59 Aligned_cols=72 Identities=39% Similarity=0.814 Sum_probs=67.1
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
+|||+|||..+++++|+++|. .||.|.++.+..+. +.++|+|||+|.+.++|++|++.+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~-~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFS-KFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHH-hcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999996 99999999999875 6788999999999999999999999999999999874
No 81
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=5.2e-14 Score=130.72 Aligned_cols=84 Identities=31% Similarity=0.577 Sum_probs=80.5
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
+.|||||||++++|++|.++|+ ..|.|.+++++.|+.||+.|||||++|.+.++|.+|++.|||.++.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~-~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFS-GVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHh-ccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 6899999999999999999997 999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCC
Q 018927 289 KKASG 293 (349)
Q Consensus 289 ~~~~~ 293 (349)
...+.
T Consensus 98 ~~~~~ 102 (435)
T KOG0108|consen 98 RKNAE 102 (435)
T ss_pred cchhH
Confidence 76653
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=9.5e-14 Score=118.88 Aligned_cols=90 Identities=21% Similarity=0.366 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 105 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
..+.....++-+||||+-|+++++|..|+..|+.||+|+.|.|+.|+.||+++|||||+|++..+...|.+..+|..|++
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 33444556888999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred CCcccccccc
Q 018927 185 TDQPFRLNWA 194 (349)
Q Consensus 185 ~~~~i~~~~~ 194 (349)
....|.++..
T Consensus 171 rri~VDvERg 180 (335)
T KOG0113|consen 171 RRILVDVERG 180 (335)
T ss_pred cEEEEEeccc
Confidence 5555554433
No 83
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.50 E-value=1.2e-12 Score=115.18 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=128.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
....+-.|+|++|...++|.+|.+.++.||.|..+..+..+ ..|.|+|+|.+.|+.++.......+...+..--
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 44566789999999999999999999999999998887765 479999999999999996554444444444444
Q ss_pred ccccccCCCCC--ccccCCCccee--ccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHH
Q 018927 191 LNWATFSGSDR--RTEACSDLSIF--VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 191 ~~~~~~~~~~~--~~~~~~~~~l~--V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (349)
++++......+ .+...++..|. |-|--+.+|-+-|..++. ..|.|.+|.|++. +|. -|+|||++.+.|++
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icn-p~GkVlRIvIfkk--ngV---QAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICN-PQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQR 174 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcC-CCCceEEEEEEec--cce---eeEEeechhHHHHH
Confidence 44443222111 12223333444 445567899999999997 9999999988865 333 59999999999999
Q ss_pred HHHHhCCeEe--CCeeEEEEEcCCCC
Q 018927 267 AMTEMNGVYC--SSRPMRIDVATPKK 290 (349)
Q Consensus 267 A~~~l~g~~~--~g~~i~v~~a~~~~ 290 (349)
|...|||..| +-.+|+|+||+|.+
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred HHhhcccccccccceeEEEEecCcce
Confidence 9999999887 46799999999863
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=2.1e-13 Score=95.34 Aligned_cols=71 Identities=37% Similarity=0.780 Sum_probs=67.0
Q ss_pred ccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 213 VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 213 V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
|+|||..+++++|+++|. .||.|.++.+..++.++.++|+|||+|.+.++|.+|++.+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFS-KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHH-hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 679999999999999996 99999999999988788999999999999999999999999999999999874
No 85
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=2.8e-13 Score=119.57 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=125.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc---c-CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSH---T-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~---~-G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
+.-.|.+++||+++++.++.+||.. . |..+.|.++... +|+..|-|||.|..++.|..||.+ |...| ..+-|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~i--GqRYI 235 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNI--GQRYI 235 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHH--hHHHH
Confidence 3446788999999999999999963 2 345666666654 889999999999999999999965 33333 23333
Q ss_pred cccccc--------------------cC------CCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCC-eee--eE
Q 018927 190 RLNWAT--------------------FS------GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKG--AK 240 (349)
Q Consensus 190 ~~~~~~--------------------~~------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~-v~~--v~ 240 (349)
++..+. .. ............+|.+++||++.+.|+|.++|. .|-. |.. |+
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg-dFa~~i~f~gVH 314 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG-DFATDIRFQGVH 314 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH-HHhhhcccceeE
Confidence 332211 00 000001223356899999999999999999997 6653 333 66
Q ss_pred EEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 241 VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 241 i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
+..+ ..|+..|-|||+|.+.|+|..|....+++....|.|+|--+...
T Consensus 315 mv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 315 MVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred EEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 6666 44899999999999999999999999998889999999877654
No 86
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=8.2e-13 Score=121.32 Aligned_cols=157 Identities=19% Similarity=0.277 Sum_probs=116.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEe-cCCC--CCccc---eEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-NKQT--GQSEG---YGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~-~~~~--g~~kg---~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
....-.++||||+||++++|+.|...|..||.+. |.... .... -..+| |+|+-|+++..+..-+.......
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~-- 330 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGE-- 330 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcc--
Confidence 3455678999999999999999999999999763 33332 1111 13456 99999999999988876643311
Q ss_pred CCCccccccccccCC----------------CCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCC
Q 018927 184 NTDQPFRLNWATFSG----------------SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT 247 (349)
Q Consensus 184 ~~~~~i~~~~~~~~~----------------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~ 247 (349)
...-+++.-...+. ........+.+|||||+||..++.++|..+|...||.|..+-|-+|++-
T Consensus 331 -~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 331 -GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred -cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 11111111110000 0112334567899999999999999999999769999999999999888
Q ss_pred CCcceEEEEEeCCHHHHHHHHHH
Q 018927 248 GRTKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 248 ~~~~g~afV~F~~~~~A~~A~~~ 270 (349)
+.++|-|-|+|.+..+-.+||.+
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhh
Confidence 89999999999999999999853
No 87
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=7.5e-14 Score=119.07 Aligned_cols=73 Identities=22% Similarity=0.519 Sum_probs=69.1
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
.+|||+|||.++++.+|+.+| |+||+|.+|.|+++ ||||..++...|+.||..|||..|+|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 379999999999999999999 59999999999975 999999999999999999999999999999999988
Q ss_pred CC
Q 018927 289 KK 290 (349)
Q Consensus 289 ~~ 290 (349)
|.
T Consensus 74 Ks 75 (346)
T KOG0109|consen 74 KS 75 (346)
T ss_pred cC
Confidence 74
No 88
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=3.6e-15 Score=118.66 Aligned_cols=82 Identities=23% Similarity=0.463 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
-.++.-|||||||++.||.||..+|++||+|++|.|++|+.||+++||||+.|++..+...|+..|||..| .++.|+|
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirV 109 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRV 109 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEe
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999 7788888
Q ss_pred cccc
Q 018927 192 NWAT 195 (349)
Q Consensus 192 ~~~~ 195 (349)
+...
T Consensus 110 DHv~ 113 (219)
T KOG0126|consen 110 DHVS 113 (219)
T ss_pred eecc
Confidence 6543
No 89
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.47 E-value=2.6e-14 Score=119.63 Aligned_cols=170 Identities=32% Similarity=0.449 Sum_probs=136.0
Q ss_pred eEEEcCCCCCCCHHH-H--HHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 117 TIWIGDLFHWMDETF-L--HNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 117 ~l~V~nLp~~~te~~-L--~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
..+++++-..+..+- | ...|+.+-.++..+++++. -+..++++|+.|...+.-.++-..-+++++ ...+|++..
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~a~ 174 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRLAA 174 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc--cCcceeecc
Confidence 456666655555444 3 6788888888888888887 567789999999988888877766677766 445566543
Q ss_pred cccCC-CCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 194 ATFSG-SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 194 ~~~~~-~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
...-. ...........+||.+.|..+++++.|-+.|. +|......++++|+.||+++||+||.|.+.+++.+|++.|+
T Consensus 175 gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~-Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFK-KFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred ccccCCcccccCccccceeecccccccccHHHHHHHHH-hccchhhccccccccccccccceeeeecCHHHHHHHHHhhc
Confidence 32211 12224455678999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred CeEeCCeeEEEEEcCCCC
Q 018927 273 GVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 273 g~~~~g~~i~v~~a~~~~ 290 (349)
|++++.|+|+++.+..+.
T Consensus 254 gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 254 GKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccccchhHhhhhhHHh
Confidence 999999999998877765
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=9.2e-14 Score=112.89 Aligned_cols=85 Identities=24% Similarity=0.423 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
+.+...+|.|-||.+-++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+|.+|+ ++.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld--gRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD--GRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec--cceee
Confidence 4466778999999999999999999999999999999999999999999999999999999999999999994 56666
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.++...
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 6655543
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=1e-12 Score=117.58 Aligned_cols=80 Identities=38% Similarity=0.721 Sum_probs=77.1
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcC
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 287 (349)
..+|||+||++++|+++|+++|. .||.|..+.+..|+.++.++|||||+|.+.++|..|++.+++..|.|+.|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~-~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFK-KFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHH-hcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 58999999999999999999997 99999999999999899999999999999999999999999999999999999976
Q ss_pred C
Q 018927 288 P 288 (349)
Q Consensus 288 ~ 288 (349)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.8e-12 Score=91.46 Aligned_cols=74 Identities=39% Similarity=0.809 Sum_probs=68.6
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
+|+|+|||..+++++|+++|. .||.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.|+.|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~-~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFS-KFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHH-hcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999996 8999999999988664 6789999999999999999999999999999999874
No 93
>smart00361 RRM_1 RNA recognition motif.
Probab=99.42 E-value=9.6e-13 Score=92.41 Aligned_cols=62 Identities=23% Similarity=0.496 Sum_probs=55.2
Q ss_pred HHHHHHHHhc----cCCCeeeeE-EEEcCCC--CCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 222 DSILQETFSS----KYPSVKGAK-VIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 222 ~~~l~~~F~~----~~G~v~~v~-i~~d~~~--~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
+++|+++| + .||.|.+|. |+.++.+ +.++|||||+|.+.++|.+|++.|||..++||.|+++
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 56777777 4 899999996 7777777 8999999999999999999999999999999999873
No 94
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=5.4e-14 Score=115.22 Aligned_cols=145 Identities=20% Similarity=0.374 Sum_probs=123.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|+...++|+-|.++|-..|+|..|.|..++ +++.| ||||+|+++.++..|++.+||..+ .+.++.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l--~~~e~q~ 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDL--EEDEEQR 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchh--ccchhhc
Confidence 4577899999999999999999999999999999998887 67777 999999999999999999999888 4444443
Q ss_pred cccccCCCCCccccCCCcceeccC----CCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHH
Q 018927 192 NWATFSGSDRRTEACSDLSIFVGD----LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~V~n----l~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (349)
+++.|+ |+..++++.+.+.|+ .-+.++.+++.++.+ |+++-++|+.+....+.-.+
T Consensus 82 ------------------~~r~G~shapld~r~~~ei~~~v~s-~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 82 ------------------TLRCGNSHAPLDERVTEEILYEVFS-QAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred ------------------ccccCCCcchhhhhcchhhheeeec-ccCCCCCcccccccc-CCccCccchhhhhhhcCcHH
Confidence 566666 888999999999997 899999999999976 88999999999988888888
Q ss_pred HHHhCCeEeCCee
Q 018927 268 MTEMNGVYCSSRP 280 (349)
Q Consensus 268 ~~~l~g~~~~g~~ 280 (349)
+....+....-++
T Consensus 142 ~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 142 LDLYQGLELFQKK 154 (267)
T ss_pred hhhhcccCcCCCC
Confidence 8776665544333
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=9.1e-13 Score=111.47 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
...+|||+||++.+||++|+++|+.||+|.+|+|++|. +.++||||+|+++++++.|+ .|+|..| .++.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEEe
Confidence 45799999999999999999999999999999999984 45589999999999999999 6999999 445555543
No 96
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=7.9e-13 Score=122.91 Aligned_cols=81 Identities=25% Similarity=0.543 Sum_probs=77.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
+.|||||||++++|++|.++|+..|.|.+++++.|+.+|++|||||++|.+.++|+.|++.|+|..+ .++.++++|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 78899999887
Q ss_pred cCC
Q 018927 196 FSG 198 (349)
Q Consensus 196 ~~~ 198 (349)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 443
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=4.4e-13 Score=101.60 Aligned_cols=86 Identities=21% Similarity=0.434 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
+.+.-.|||.+++...||++|.+.|..||+|+.+.|..|+.+|-.||||+|+|++.+.|.+|+..+||..| .+..|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~V 146 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSV 146 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999988 7788999
Q ss_pred cccccCCC
Q 018927 192 NWATFSGS 199 (349)
Q Consensus 192 ~~~~~~~~ 199 (349)
+|...+..
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 98765543
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=8.7e-13 Score=123.29 Aligned_cols=173 Identities=20% Similarity=0.366 Sum_probs=137.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-----------G-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~-----------G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g 179 (349)
....+.++|+++++.++|+.+..+|..- | .+..+.+-.++ .|||++|.+.++|..|+. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhc-ccc
Confidence 3466789999999999999999998764 2 36666665554 799999999999999994 677
Q ss_pred CCCCCCCccccccccccC----------------CCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEE
Q 018927 180 SLMPNTDQPFRLNWATFS----------------GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII 243 (349)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~ 243 (349)
..+.+....+........ ............++||++||..++++.+++++. .||.+....++.
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~-~fg~lk~f~lv~ 323 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLD-SFGPLKAFRLVK 323 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHH-hcccchhheeec
Confidence 666443333322221100 011112234456899999999999999999995 999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCC
Q 018927 244 DSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 244 d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 292 (349)
|..+|-++||||.+|.+......|+..|||+.++++.|.|..|-.....
T Consensus 324 d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 324 DSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred ccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 9999999999999999999999999999999999999999998876543
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.40 E-value=1.5e-11 Score=112.34 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=119.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~-~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
...-.|.+++||+.||++||.+||+..-.|.. |.++.+. .+++.|-|||.|++.+.|++||.. +...| ..+-|.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~i--GhRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENI--GHRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhh--ccceEEe
Confidence 35568999999999999999999998765555 5556665 678999999999999999999954 22222 1111111
Q ss_pred cccc-----------------------------------cCC--------------------------------------
Q 018927 192 NWAT-----------------------------------FSG-------------------------------------- 198 (349)
Q Consensus 192 ~~~~-----------------------------------~~~-------------------------------------- 198 (349)
..+. ...
T Consensus 177 F~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~ 256 (510)
T KOG4211|consen 177 FRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRD 256 (510)
T ss_pred ehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccc
Confidence 0000 000
Q ss_pred ---C----CCc--------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHH
Q 018927 199 ---S----DRR--------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263 (349)
Q Consensus 199 ---~----~~~--------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~ 263 (349)
. ... ........++.++||+..++.+|..+|+ ......|+|-... +|+..|-|+|+|.+.++
T Consensus 257 ~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFs--pl~p~~v~i~ig~-dGr~TGEAdveF~t~ed 333 (510)
T KOG4211|consen 257 PNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFS--PLNPYRVHIEIGP-DGRATGEADVEFATGED 333 (510)
T ss_pred cccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcC--CCCceeEEEEeCC-CCccCCcceeecccchh
Confidence 0 000 0001114688899999999999999996 4555678877764 48999999999999999
Q ss_pred HHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 264 RSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 264 A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
|..|+ .-++..+..+.|.+-.-..
T Consensus 334 av~Am-skd~anm~hrYVElFln~~ 357 (510)
T KOG4211|consen 334 AVGAM-GKDGANMGHRYVELFLNGA 357 (510)
T ss_pred hHhhh-ccCCcccCcceeeecccCC
Confidence 99998 6677888888877766543
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.7e-13 Score=111.17 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++||||+|..++||.-|...|-.||.|.+|.+..|..+++.+||+||+|.-.++|.+||..||+..| .++.|+|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred ccccCC
Q 018927 193 WATFSG 198 (349)
Q Consensus 193 ~~~~~~ 198 (349)
++++..
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 988653
No 101
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.39 E-value=8.6e-13 Score=117.32 Aligned_cols=178 Identities=21% Similarity=0.307 Sum_probs=142.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...+++|++++.+.+.+.++..++..+|.+....+........++|++++.|...+.+..|+.......+.+......+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999998888888887778899999999999999999999754444443333222222
Q ss_pred ccccC---CCCCccccCCCccee-ccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHH
Q 018927 193 WATFS---GSDRRTEACSDLSIF-VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (349)
Q Consensus 193 ~~~~~---~~~~~~~~~~~~~l~-V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (349)
..... ............++| |++|+..+++++|+.+|. .+|.|..+++..++.++..+|||||+|.+..++..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~-~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV-SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhcc-CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 22210 111112223334455 999999999999999996 9999999999999999999999999999999999998
Q ss_pred HHhCCeEeCCeeEEEEEcCCCCCC
Q 018927 269 TEMNGVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 269 ~~l~g~~~~g~~i~v~~a~~~~~~ 292 (349)
.. ....+.++++++.+..+...+
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 77 888999999999999887655
No 102
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=1.5e-12 Score=118.47 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCH--HHHHHHHHHhCCCCCCCCCcccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR--AAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~--~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
....+||||||++.+++++|+.+|..||.|.+|.|+++ +| ||||||+|.+. .++.+||..|+|..+ .++.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCceeE
Confidence 34578999999999999999999999999999999944 66 89999999987 789999999999999 566677
Q ss_pred ccccc
Q 018927 191 LNWAT 195 (349)
Q Consensus 191 ~~~~~ 195 (349)
|+.++
T Consensus 82 VNKAK 86 (759)
T PLN03213 82 LEKAK 86 (759)
T ss_pred Eeecc
Confidence 76554
No 103
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=2.7e-12 Score=89.96 Aligned_cols=65 Identities=34% Similarity=0.589 Sum_probs=60.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
+|||+|||..+++++|+++|+.||.|.++++..+. +.++++|||+|.+.++|.+|++.+++..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 58999999999999999999999999999999876 778899999999999999999999988774
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=3e-12 Score=85.72 Aligned_cols=56 Identities=30% Similarity=0.629 Sum_probs=50.3
Q ss_pred HHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 225 l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
|+++|+ +||+|.++.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|+||
T Consensus 1 L~~~f~-~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFS-KFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHT-TTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhC-CcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678996 99999999987542 589999999999999999999999999999999986
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=3.3e-12 Score=89.20 Aligned_cols=65 Identities=37% Similarity=0.621 Sum_probs=60.8
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 120 IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 120 V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
|+|||..+++++|+++|+.||.|..+++..++.++.++|+|||+|.+.++|.+|++.+++..+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 67999999999999999999999999999988789999999999999999999999999887743
No 106
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=89.83 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=69.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.++..++.|||+|||+++|.+++.++|.+||.|..|+|-..+. .+|.|||.|++..+|.+|++.|+|..+ .++.+
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl 87 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYL 87 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhccccc--CCceE
Confidence 4556788999999999999999999999999999999987664 469999999999999999999999888 55666
Q ss_pred ccccc
Q 018927 190 RLNWA 194 (349)
Q Consensus 190 ~~~~~ 194 (349)
.+-+-
T Consensus 88 ~vlyy 92 (124)
T KOG0114|consen 88 VVLYY 92 (124)
T ss_pred EEEec
Confidence 65543
No 107
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.8e-12 Score=110.80 Aligned_cols=86 Identities=26% Similarity=0.439 Sum_probs=80.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+.+.|||..|.+-+|++||.-+|+ .||.|.+|.|++|+.||.+.-||||+|++.+++++|.-.|++..|++|.|+|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFS-rFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFS-RFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHh-hcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45677999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCC
Q 018927 285 VATPKKA 291 (349)
Q Consensus 285 ~a~~~~~ 291 (349)
|+..-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9866443
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=2.5e-11 Score=85.46 Aligned_cols=72 Identities=36% Similarity=0.646 Sum_probs=63.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+++|||+|.+.++|..|++.+++..+ .++.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 5899999999999999999999999999999988744 7789999999999999999999999877 3444443
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=8.9e-13 Score=127.34 Aligned_cols=151 Identities=20% Similarity=0.277 Sum_probs=133.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
+..+++||+||+..+.+.+|...|..+|.+..+.+...++.++.+|+|||+|.+.+++.+|+...++..+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 34567899999999999999999999998888888767778999999999999999999999866555442
Q ss_pred ccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
...|+|.|+|+..|.++|+.+++ .+|.+.++++++.+. |+.+|.|+|.|.+..++.++....+
T Consensus 736 ---------------K~~v~i~g~pf~gt~e~~k~l~~-~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 ---------------KISVAISGPPFQGTKEELKSLAS-KTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred ---------------hhhhheeCCCCCCchHHHHhhcc-ccCCccccchhhhhc-cccccceeccCCCcchhhhhcccch
Confidence 23799999999999999999997 999999999888765 8999999999999999999998888
Q ss_pred CeEeCCeeEEEEEcCCC
Q 018927 273 GVYCSSRPMRIDVATPK 289 (349)
Q Consensus 273 g~~~~g~~i~v~~a~~~ 289 (349)
...+..+.+.|..+.+.
T Consensus 799 ~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 799 VAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhhcCccccccCCc
Confidence 88888888888887664
No 110
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.20 E-value=2.6e-11 Score=116.09 Aligned_cols=108 Identities=23% Similarity=0.382 Sum_probs=91.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
-++|||||.|+..++|.||..+|+.||+|.+|.++..+ +||||.+..+.+|++|+.+|....+ ..+.|++.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~W 491 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAW 491 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc--cceeeEEee
Confidence 34789999999999999999999999999999998866 8999999999999999999998877 888999999
Q ss_pred cccCCCCCccccCCCcceeccCCCCCCCHHHHHHHH
Q 018927 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 229 (349)
+................|=|.-||++.-.++|+.++
T Consensus 492 a~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 492 AVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred eccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 987665554444445566777888876666677776
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.18 E-value=3.5e-11 Score=107.37 Aligned_cols=85 Identities=25% Similarity=0.446 Sum_probs=77.7
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||++|++++++|.|++.|. .||+|.+|.+++|+.+++++||+||+|++.+...++| ....+.|+|+.|.++.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~-~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFS-QFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhc-ccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceec
Confidence 567999999999999999999996 9999999999999999999999999999999988888 55568899999999999
Q ss_pred CCCCCCC
Q 018927 287 TPKKASG 293 (349)
Q Consensus 287 ~~~~~~~ 293 (349)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 9977553
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1e-10 Score=82.10 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=50.4
Q ss_pred HHHHHHHhh----ccCCeEEEE-EEecCCC--CCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 129 ETFLHNCFS----HTGQVVNVK-VIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 129 e~~L~~~f~----~~G~i~~~~-~~~~~~~--g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
+++|+++|+ .||.|.++. ++.++.+ +.++|||||+|.+.++|.+|++.|+|..+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 678999998 999999995 7777766 8999999999999999999999999999844
No 113
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=8.6e-11 Score=99.35 Aligned_cols=82 Identities=26% Similarity=0.337 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
....+.|.|||-.||.++.+.||..+|..||.|++.++..|+.|+.+|.|+||.|+++.+|..||..+||..|.-+..++
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999985444433
Q ss_pred cc
Q 018927 190 RL 191 (349)
Q Consensus 190 ~~ 191 (349)
.+
T Consensus 360 QL 361 (371)
T KOG0146|consen 360 QL 361 (371)
T ss_pred hh
Confidence 33
No 114
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=2.5e-10 Score=93.33 Aligned_cols=85 Identities=20% Similarity=0.290 Sum_probs=77.4
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
......++|..+|..+.+.+|..+|.+..|.|.++++-+++.||.++|||||+|++.+.|.-|-+.||+..|.++-|.|+
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 34455799999999999999999998434888999998999999999999999999999999999999999999999999
Q ss_pred EcCCC
Q 018927 285 VATPK 289 (349)
Q Consensus 285 ~a~~~ 289 (349)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98886
No 115
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.11 E-value=1.9e-10 Score=95.57 Aligned_cols=81 Identities=21% Similarity=0.424 Sum_probs=74.0
Q ss_pred CCcceeccCCCCCCCHHHHHH----HHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQE----TFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~----~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
+..||||.||+..+..++|++ +|+ .||.|.+|...+ +.+.||-|||.|.+.+.|-.|++.|+|..+-|++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFs-qfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFS-QFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHH-hhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 344999999999999999998 997 999999998874 578899999999999999999999999999999999
Q ss_pred EEEcCCCCC
Q 018927 283 IDVATPKKA 291 (349)
Q Consensus 283 v~~a~~~~~ 291 (349)
|.||..+..
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999988754
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=1.9e-10 Score=76.90 Aligned_cols=56 Identities=32% Similarity=0.660 Sum_probs=48.9
Q ss_pred HHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 132 L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
|+++|++||+|.++.+.++. +++|||+|.+.++|.+|++.|++..+ .++.|++.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 68999999999999997765 48999999999999999999999999 6677888764
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.06 E-value=2.9e-10 Score=109.02 Aligned_cols=81 Identities=17% Similarity=0.410 Sum_probs=74.2
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
..++||||+.|+..++|.||..+| |.||+|.+|.++. ++|||||.+....+|.+|+.+|+...+.++.|+|.|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~f-eefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLF-EEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHH-HhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 346799999999999999999999 5999999998874 578999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 018927 286 ATPKKASG 293 (349)
Q Consensus 286 a~~~~~~~ 293 (349)
+..+..+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 99887654
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=1.4e-10 Score=112.97 Aligned_cols=165 Identities=21% Similarity=0.350 Sum_probs=135.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.....+++||+|||+..+++.+|+..|..+|.|.+|.|..-. -+.-.-|+||.|.+.+.+-.|+..+.+..|......+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 345578899999999999999999999999999999887653 3344468999999999999999999888886554444
Q ss_pred cccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHH
Q 018927 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (349)
.+..- .....+.++|++|..++....|...|. .||.|..|.+-. | --||+|.|++...|..|++
T Consensus 446 glG~~---------kst~ttr~~sgglg~w~p~~~l~r~fd-~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 446 GLGQP---------KSTPTTRLQSGGLGPWSPVSRLNREFD-RFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccccc---------ccccceeeccCCCCCCChHHHHHHHhh-ccCcceeeeccc----C--CcceeeecccCccchhhHH
Confidence 43321 244667899999999999999999996 999998766532 2 2499999999999999999
Q ss_pred HhCCeEeC--CeeEEEEEcCCCCC
Q 018927 270 EMNGVYCS--SRPMRIDVATPKKA 291 (349)
Q Consensus 270 ~l~g~~~~--g~~i~v~~a~~~~~ 291 (349)
.|-|..|+ .+.|+|.|+.+...
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCC
Confidence 99999997 57899999988654
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.4e-10 Score=100.28 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
..+.+.|||..|.+-+|+++|.-+|+.||.|.+|.|++|..||.+.-||||+|++.+++++|.-+|+...| ..+.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHV 313 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHV 313 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEe
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999 5666777
Q ss_pred cccc
Q 018927 192 NWAT 195 (349)
Q Consensus 192 ~~~~ 195 (349)
+|+.
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 6654
No 120
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.04 E-value=1.1e-09 Score=101.38 Aligned_cols=82 Identities=26% Similarity=0.490 Sum_probs=69.9
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
.+|||+|||.++++++|+++|. .||.|+...|....-.++..+||||+|++.++++.||.+ +-..|++++|.|+-.++
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk-~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFK-QFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHh-hcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4599999999999999999997 999999998887543344458999999999999999954 57889999999998877
Q ss_pred CCCC
Q 018927 289 KKAS 292 (349)
Q Consensus 289 ~~~~ 292 (349)
....
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5443
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.02 E-value=8.8e-10 Score=90.22 Aligned_cols=79 Identities=28% Similarity=0.460 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~-G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
......+||..+|..+.+.+|..+|..+ |.|..+++.+++.||.+||||||+|++.+.|+-|-+.||+..+ .++.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl--~e~lL~ 123 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL--MEHLLE 123 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh--hhheee
Confidence 3455679999999999999999999998 7888899989999999999999999999999999999999998 444444
Q ss_pred cc
Q 018927 191 LN 192 (349)
Q Consensus 191 ~~ 192 (349)
+.
T Consensus 124 c~ 125 (214)
T KOG4208|consen 124 CH 125 (214)
T ss_pred eE
Confidence 43
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.6e-09 Score=95.20 Aligned_cols=81 Identities=21% Similarity=0.439 Sum_probs=70.0
Q ss_pred cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHh-CCeEeCCeeE
Q 018927 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPM 281 (349)
Q Consensus 203 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~i 281 (349)
.++....+|||++|-..++|.+|+++|. +||+|.++.+... +++|||+|.+.++|+.|.+.+ |...|+|+.|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFy-qyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFY-QYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHh-hcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 4455667999999999999999999996 9999999998854 469999999999999887655 5566899999
Q ss_pred EEEEcCCCC
Q 018927 282 RIDVATPKK 290 (349)
Q Consensus 282 ~v~~a~~~~ 290 (349)
+|.|..++.
T Consensus 296 ~i~Wg~~~~ 304 (377)
T KOG0153|consen 296 KIKWGRPKQ 304 (377)
T ss_pred EEEeCCCcc
Confidence 999999944
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.99 E-value=1.6e-09 Score=96.20 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=119.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
..+++..|..++|||..++.+|..+|+..--..-.+.+.....|+..|.+.|.|.|.|.-+.|++. +.+.+ ..+.+.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~--g~ryie 132 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHM--GTRYIE 132 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhc--cCCcee
Confidence 345566788899999999999999998764333333333344677779999999999999999965 44334 344444
Q ss_pred ccccccC-----------CCCCccccCCCcceeccCCCCCCCHHHHHHHHhccC---CCeeeeEEEEcCCCCCcceEEEE
Q 018927 191 LNWATFS-----------GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY---PSVKGAKVIIDSNTGRTKGYGFV 256 (349)
Q Consensus 191 ~~~~~~~-----------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~---G~v~~v~i~~d~~~~~~~g~afV 256 (349)
+-.+..+ ..........-..|.+++||+++++.++.++|...+ |.++.|-+++.++ |+..|-|||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFv 211 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFV 211 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEE
Confidence 4322211 111111122334688899999999999999995222 3455666666544 899999999
Q ss_pred EeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 257 ~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
.|..+++|+.|| .-|...|+-|.|++-.++.
T Consensus 212 lfa~ee~aq~aL-~khrq~iGqRYIElFRSTa 242 (508)
T KOG1365|consen 212 LFACEEDAQFAL-RKHRQNIGQRYIELFRSTA 242 (508)
T ss_pred EecCHHHHHHHH-HHHHHHHhHHHHHHHHHhH
Confidence 999999999999 4455667777777755544
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.89 E-value=5.6e-09 Score=97.05 Aligned_cols=84 Identities=23% Similarity=0.412 Sum_probs=77.7
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
..++.|||.+|...+...+|+.+|+ +||.|+-.+|+++..+.-.++|+||++.+.++|.+||+.||..+|.||.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFS-KyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFS-KYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHH-HhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3456899999999999999999998 999999999999988778899999999999999999999999999999999999
Q ss_pred cCCCC
Q 018927 286 ATPKK 290 (349)
Q Consensus 286 a~~~~ 290 (349)
++...
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87753
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=5.4e-09 Score=91.89 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=68.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
..+...++|||++|-..++|.+|++.|.+||+|+++.++..+ ++|||+|.+.++|+.|.+++-.. +...+..|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~-lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNK-LVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcce-eeecceEE
Confidence 345566899999999999999999999999999999998876 79999999999999998776543 33367778
Q ss_pred ccccccc
Q 018927 190 RLNWATF 196 (349)
Q Consensus 190 ~~~~~~~ 196 (349)
++.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 8889876
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.87 E-value=1.5e-08 Score=74.61 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=70.0
Q ss_pred cceeccCCCCCCCHHHHHHHHhccC-CCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC----CeeEEE
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS----SRPMRI 283 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~-G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~i~v 283 (349)
+||.|+|||...|.++|.+++.+.+ |...-+.++.|-.++.+.|||||.|.+.++|.+-.+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 5899999999999999999996443 56667889999999999999999999999999999999998874 566788
Q ss_pred EEcCCC
Q 018927 284 DVATPK 289 (349)
Q Consensus 284 ~~a~~~ 289 (349)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887654
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.86 E-value=8.3e-09 Score=88.70 Aligned_cols=84 Identities=30% Similarity=0.475 Sum_probs=76.0
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
...+|+|.||++.++++||+++|. .||.++.+-+..|+. |.+.|.|-|.|...++|.+|++.+++..++|+.|++.+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~-~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFA-EFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHH-HhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 346899999999999999999996 999999999999865 899999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 018927 287 TPKKAS 292 (349)
Q Consensus 287 ~~~~~~ 292 (349)
.+....
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 765433
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.84 E-value=1e-08 Score=97.46 Aligned_cols=184 Identities=14% Similarity=0.065 Sum_probs=130.5
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 018927 100 NGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g 179 (349)
+++..+........+.+.+-+.+++++.++.|+++||... .|..+.|..+...+...|.++|+|....++.+|+.. +.
T Consensus 296 ~ns~sggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~ 373 (944)
T KOG4307|consen 296 NNSYSGGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NP 373 (944)
T ss_pred cCCCCCCCCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cc
Confidence 3444444444555677888889999999999999999764 466666777665555579999999999999999864 32
Q ss_pred CCCCCCCcccccc------ccc---------------------------cCCCC-CccccCCCcceeccCCCCCCCHHHH
Q 018927 180 SLMPNTDQPFRLN------WAT---------------------------FSGSD-RRTEACSDLSIFVGDLAPDVTDSIL 225 (349)
Q Consensus 180 ~~~~~~~~~i~~~------~~~---------------------------~~~~~-~~~~~~~~~~l~V~nl~~~~t~~~l 225 (349)
..+ ..+.+.+. |.. ..... .........+|||..||..+++.++
T Consensus 374 ~~~--~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~ 451 (944)
T KOG4307|consen 374 SDD--VNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPP 451 (944)
T ss_pred hhh--hhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccch
Confidence 222 22222221 110 00000 0011223468999999999999999
Q ss_pred HHHHhccCCCeee-eEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 226 QETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 226 ~~~F~~~~G~v~~-v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
.++|+ .--.|++ |.|-..+ +++.++.|||+|..++++.+|...-+.++++-|.|+|+-...+
T Consensus 452 v~~f~-~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 452 VNKFM-GAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred hhhhh-hhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 99997 5556766 6655554 4788899999999999999998666778889999999876654
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.83 E-value=3.6e-08 Score=93.80 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=64.6
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
.|-+.|+|++++-+||.++|+ .|-.+-.-.+++..+.|...|-|.|-|++.++|.+|...|+++.|..|+|.+.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~-dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFN-DYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhc-ccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 688999999999999999997 786554333334446699999999999999999999999999999999999876
No 130
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.82 E-value=2.7e-08 Score=82.30 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=71.4
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEE-EcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC---CeeE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS---SRPM 281 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~-~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~---g~~i 281 (349)
..-+||||.+||.++...||..+|. .|...+.+.+. +++.....+-+|||+|.+..+|.+|+++|||..|+ +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457999999999999999999997 77666665554 33332334579999999999999999999999996 8899
Q ss_pred EEEEcCCCCCCCc
Q 018927 282 RIDVATPKKASGY 294 (349)
Q Consensus 282 ~v~~a~~~~~~~~ 294 (349)
+|++|+...++.+
T Consensus 111 hiElAKSNtK~kr 123 (284)
T KOG1457|consen 111 HIELAKSNTKRKR 123 (284)
T ss_pred EeeehhcCccccc
Confidence 9999988765543
No 131
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.82 E-value=2.9e-08 Score=73.16 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=68.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC--CCccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN--TDQPFRL 191 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~--~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~--~~~~i~~ 191 (349)
+||+|+|||...|.++|.+++.. .|....+.+..|..++.+.|||||.|.+.+.|.+..+.++|..+.. ..+.+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999976 3678889999999999999999999999999999999999998853 2344555
Q ss_pred cccc
Q 018927 192 NWAT 195 (349)
Q Consensus 192 ~~~~ 195 (349)
.|+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 132
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=8.4e-09 Score=86.72 Aligned_cols=74 Identities=20% Similarity=0.460 Sum_probs=67.0
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
++||++|++.+.+.+|.++|. .||.|.+|.+. .||+||+|++..+|..|+..||++.|++-.+.|.+++.+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~-~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFK-GYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHh-hccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 699999999999999999997 99999988765 369999999999999999999999999988999998876
Q ss_pred CCC
Q 018927 290 KAS 292 (349)
Q Consensus 290 ~~~ 292 (349)
...
T Consensus 74 ~~~ 76 (216)
T KOG0106|consen 74 RRG 76 (216)
T ss_pred ccc
Confidence 543
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.82 E-value=9.3e-10 Score=98.74 Aligned_cols=156 Identities=15% Similarity=0.309 Sum_probs=120.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
.+|||+||.+.++..+|..+|...- ....-.+++. ||+||++.+...|.+|++.++|+. ...+..+.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~-elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKV-ELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhh-hhcCceeeccch
Confidence 4799999999999999999998652 1222223332 899999999999999999998874 234555555544
Q ss_pred ccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEE-EcCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018927 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (349)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~-~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (349)
-.+ ...++++-|+|+|+...|+.|..++. .||.|+.|... +|.+ .-..-|+|.+.+.+..||..|+|
T Consensus 74 v~k-------kqrsrk~Qirnippql~wevld~Ll~-qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 74 VPK-------KQRSRKIQIRNIPPQLQWEVLDSLLA-QYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred hhH-------HHHhhhhhHhcCCHHHHHHHHHHHHh-ccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcc
Confidence 332 22345799999999999999999997 99999998764 3332 22345789999999999999999
Q ss_pred eEeCCeeEEEEEcCCCCC
Q 018927 274 VYCSSRPMRIDVATPKKA 291 (349)
Q Consensus 274 ~~~~g~~i~v~~a~~~~~ 291 (349)
..+....++|.|--....
T Consensus 142 ~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 142 PQLENQHLKVGYIPDEQN 159 (584)
T ss_pred hHhhhhhhhcccCchhhh
Confidence 999999999999766543
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=8.2e-09 Score=96.18 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=112.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.+...++|+|-|||.++++++|+.+|+.||+|++|+..+.+ +|.+||+|.|..+|++|++.|++..+.+.. ++
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~--~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKR--IK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhh--hc
Confidence 35678899999999999999999999999999997665543 489999999999999999999998884433 33
Q ss_pred ccccc---------------cCCC--CCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceE
Q 018927 191 LNWAT---------------FSGS--DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY 253 (349)
Q Consensus 191 ~~~~~---------------~~~~--~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~ 253 (349)
..... .... .......+...+|+ .|++..+...++..+. .+|.+.. +. ++.-+--
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~-~~~~~~~-~~-----~~~~~hq 215 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISS-VDGSSPG-RE-----TPLLNHQ 215 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchh-ccCcccc-cc-----ccchhhh
Confidence 11110 0000 00011112234444 4888888877777775 7887664 22 2221224
Q ss_pred EEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 254 afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
-|++|.+..++..+...+ |+.+.+....+.++.+.
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEecCCC
Confidence 678888888886666533 77777888888887764
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.76 E-value=1.7e-08 Score=85.19 Aligned_cols=81 Identities=30% Similarity=0.547 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
+.+.-+||.|.|..+++++.|...|.+|-....-++++|+.+|+++||+||.|.+..++.+|+++++|+.+ ..++|++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpikl 264 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKL 264 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHh
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999 6677766
Q ss_pred ccc
Q 018927 192 NWA 194 (349)
Q Consensus 192 ~~~ 194 (349)
..+
T Consensus 265 RkS 267 (290)
T KOG0226|consen 265 RKS 267 (290)
T ss_pred hhh
Confidence 443
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=5.3e-08 Score=90.70 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
...-.+.|||.+|...+-..+|+.+|++||.|+..+|+.+..+--.+.|+||++.+.++|.++|+.|+...| .++.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmIS 478 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMIS 478 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeee
Confidence 345667899999999999999999999999999999999887777889999999999999999999999999 677888
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
|..++..+
T Consensus 479 VEkaKNEp 486 (940)
T KOG4661|consen 479 VEKAKNEP 486 (940)
T ss_pred eeecccCc
Confidence 87776543
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.74 E-value=1.8e-08 Score=86.81 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=78.0
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
......+||+|+++.+|.+++..+|. .||.|..+.|+.|+.++.+|||+||+|.+.+.+++|+. |++..|.|+.|.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~-~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFE-SCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheee-ccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34556899999999999999999995 99999999999999999999999999999999999996 99999999999999
Q ss_pred EcCCCCC
Q 018927 285 VATPKKA 291 (349)
Q Consensus 285 ~a~~~~~ 291 (349)
+.+.+..
T Consensus 176 ~~r~~~p 182 (231)
T KOG4209|consen 176 LKRTNVP 182 (231)
T ss_pred eeeeecC
Confidence 9877643
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=8.2e-09 Score=85.14 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+|+...++|+.|.++|- ..|.|..|.|..+++ ++.| ||||.|+++....-|++.+||..+.++.|.|++-
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfi-qaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFI-QAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhh-ccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 456999999999999999999997 899999999998876 5566 9999999999999999999999999999988875
Q ss_pred CC
Q 018927 287 TP 288 (349)
Q Consensus 287 ~~ 288 (349)
.-
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 43
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=7.5e-08 Score=82.85 Aligned_cols=80 Identities=21% Similarity=0.372 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
......+|+|.||++.++++||+++|..||.+..+.|-.++ +|++.|.|-|.|...++|++|++.+++..+++. +++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~--~mk 155 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGR--PMK 155 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCc--eee
Confidence 34455789999999999999999999999988888888877 899999999999999999999999999777554 455
Q ss_pred ccc
Q 018927 191 LNW 193 (349)
Q Consensus 191 ~~~ 193 (349)
+..
T Consensus 156 ~~~ 158 (243)
T KOG0533|consen 156 IEI 158 (243)
T ss_pred eEE
Confidence 443
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=2.4e-08 Score=93.06 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=65.6
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
.+.+..+|+|-|||..+++++|+.+|+ .||+|..|+. +-..+|.+||+|.|..+|++|+++|++.+|.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~-~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFG-AYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHH-hhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 355678999999999999999999996 9999998653 345679999999999999999999999999999998
No 141
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.58 E-value=2.8e-07 Score=81.22 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=73.5
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCee--------eeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--------GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~--------~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~ 276 (349)
...++.|||.|||.++|.+++.++|+ +||.|. .|+|.++.. |..+|-|+|.|.-.++..-||+.|++..|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~s-KcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMS-KCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHH-hcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 33456799999999999999999998 999875 367888855 99999999999999999999999999999
Q ss_pred CCeeEEEEEcCCC
Q 018927 277 SSRPMRIDVATPK 289 (349)
Q Consensus 277 ~g~~i~v~~a~~~ 289 (349)
.|+.|+|..|+=.
T Consensus 209 rg~~~rVerAkfq 221 (382)
T KOG1548|consen 209 RGKKLRVERAKFQ 221 (382)
T ss_pred cCcEEEEehhhhh
Confidence 9999999998643
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.56 E-value=2e-07 Score=89.16 Aligned_cols=83 Identities=28% Similarity=0.591 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~---~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
....++.|||+||++.++|+.|...|..||+|..++|+.-+. ..+.+.|+||-|-+..+|++|++.|+|..+ ...
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~ 247 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEY 247 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eee
Confidence 356678899999999999999999999999999999987542 245567999999999999999999999998 778
Q ss_pred cccccccc
Q 018927 188 PFRLNWAT 195 (349)
Q Consensus 188 ~i~~~~~~ 195 (349)
.+++.|++
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 88888886
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.54 E-value=1e-07 Score=82.26 Aligned_cols=82 Identities=21% Similarity=0.424 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
..-+.+.+||+|+.+.+|.+++...|+.||.|..+.+..|+..|.+|||+||+|.+.+.++.++. |++..| .++.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i--~~~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI--PGPAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc--ccccce
Confidence 34567899999999999999999999999999999999999999999999999999999999997 999999 445555
Q ss_pred ccccc
Q 018927 191 LNWAT 195 (349)
Q Consensus 191 ~~~~~ 195 (349)
+.+..
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 54433
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.47 E-value=3.8e-07 Score=84.83 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=55.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 176 (349)
.....+|||+|||.++++++|+++|+.||+|+...|......++...||||+|.+.+++..||.+
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 34455699999999999999999999999999988876544455559999999999999999975
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.41 E-value=6e-07 Score=85.93 Aligned_cols=84 Identities=23% Similarity=0.495 Sum_probs=73.9
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcC---CCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 281 (349)
+...+.|||+||++.++++.|...|. .||.|.+|+|+..+ +..+.+-++||-|-+..+|++|++.|+|..+.++.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfG-rfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFG-RFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhc-ccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 44557899999999999999999997 99999999998654 234556799999999999999999999999999999
Q ss_pred EEEEcCCC
Q 018927 282 RIDVATPK 289 (349)
Q Consensus 282 ~v~~a~~~ 289 (349)
++-|+++-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99999653
No 146
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.35 E-value=9.8e-07 Score=78.51 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=76.8
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCee--------eeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCC
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVK--------GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~--------~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 278 (349)
...+|||-+|+..+++++|.++|. .+|.|. .|.|-+|++|++.||-|.|.|++...|+.|++.++++.+.+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~-qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFL-QCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHh-hcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 345899999999999999999997 999875 35678899999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCC
Q 018927 279 RPMRIDVATPKKA 291 (349)
Q Consensus 279 ~~i~v~~a~~~~~ 291 (349)
.+|+|.+|..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999999988764
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.32 E-value=1.3e-07 Score=84.39 Aligned_cols=166 Identities=11% Similarity=0.073 Sum_probs=115.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~---g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
..|.|.||.+.+|.+.+..||...|.|.++.|+....+ ......|||.|.|...+..|-...|...|+ ..+ |.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvd-ral-iv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVD-RAL-IVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeee-eeE-EEEe
Confidence 38999999999999999999999999999999874322 334468999999999999888654444442 111 1111
Q ss_pred ccccCCCC----------------------------C-c---------------------cccCCCcceeccCCCCCCCH
Q 018927 193 WATFSGSD----------------------------R-R---------------------TEACSDLSIFVGDLAPDVTD 222 (349)
Q Consensus 193 ~~~~~~~~----------------------------~-~---------------------~~~~~~~~l~V~nl~~~~t~ 222 (349)
+....... . . ......++++|.+|...+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 11100000 0 0 00011257999999999999
Q ss_pred HHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 223 ~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
.++.+.|. .+|+|...++.. +...-+|.|+|........|+ .++|..+.-...++.+.+|.
T Consensus 166 ~e~~e~f~-r~Gev~ya~~as----k~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 166 PESGESFE-RKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhhh-hcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCcc
Confidence 99999995 999999887753 333457889999988888888 66777766444455554444
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=1.7e-07 Score=91.47 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=113.8
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 114 ETKTIWIGDLFHWMDET-FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~-~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
..+...+.++.+...+. ..+..|..+|.|+.|++......-..-.+.++.+....+++.|.. ..+.-+ ..+...+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~--a~~~~av~ 646 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGAL--ANRSAAVG 646 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-cccccc--CCccccCC
Confidence 44566777887666555 678899999999999887632221222378999999999999985 455555 34444444
Q ss_pred ccccCCCCCcccc-----CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHH
Q 018927 193 WATFSGSDRRTEA-----CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (349)
Q Consensus 193 ~~~~~~~~~~~~~-----~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (349)
.++.......... ....++||+||++.+.+++|...|+ .+|.+..+.+....+.++.||+|||+|...+++.+|
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~-~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFS-PSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcC-ccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 4443332222111 2235899999999999999999997 999988887775556788999999999999999999
Q ss_pred HHHhCCeE
Q 018927 268 MTEMNGVY 275 (349)
Q Consensus 268 ~~~l~g~~ 275 (349)
+....++.
T Consensus 726 V~f~d~~~ 733 (881)
T KOG0128|consen 726 VAFRDSCF 733 (881)
T ss_pred hhhhhhhh
Confidence 95444433
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.13 E-value=1.1e-05 Score=56.71 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=46.8
Q ss_pred cceeccCCCCCCCHHHHH----HHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 209 LSIFVGDLAPDVTDSILQ----ETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~----~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
..|+|.|||.+.+...|+ .++ +.|| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLs-dNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLS-DNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHH-HTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh-hccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 369999999998886654 455 3665 455441 257999999999999999999999999999999
Q ss_pred EEcCCCC
Q 018927 284 DVATPKK 290 (349)
Q Consensus 284 ~~a~~~~ 290 (349)
+|....+
T Consensus 72 ~~~~~~r 78 (90)
T PF11608_consen 72 SFSPKNR 78 (90)
T ss_dssp ESS--S-
T ss_pred EEcCCcc
Confidence 9985543
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.11 E-value=8.5e-06 Score=71.68 Aligned_cols=81 Identities=20% Similarity=0.408 Sum_probs=64.9
Q ss_pred CcceeccCCCCCCCHHHH------HHHHhccCCCeeeeEEEEcCCC-CCcceEE--EEEeCCHHHHHHHHHHhCCeEeCC
Q 018927 208 DLSIFVGDLAPDVTDSIL------QETFSSKYPSVKGAKVIIDSNT-GRTKGYG--FVRFGDENERSRAMTEMNGVYCSS 278 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l------~~~F~~~~G~v~~v~i~~d~~~-~~~~g~a--fV~F~~~~~A~~A~~~l~g~~~~g 278 (349)
..-+||-+|++.+..|++ .++|. +||.|..|.|-+...+ ....+++ ||+|.+.|+|.+||...+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFG-QyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFG-QYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhh-hccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 346899999999887773 58897 9999998777654311 1222334 999999999999999999999999
Q ss_pred eeEEEEEcCCC
Q 018927 279 RPMRIDVATPK 289 (349)
Q Consensus 279 ~~i~v~~a~~~ 289 (349)
|.|+..|.+.|
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999998775
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.03 E-value=6.2e-06 Score=62.29 Aligned_cols=70 Identities=16% Similarity=0.304 Sum_probs=44.1
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC-----eEeCCeeEEE
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-----VYCSSRPMRI 283 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g-----~~~~g~~i~v 283 (349)
..|+|.+++..++.++|++.|+ .||.|..|.+..... .|||.|.+.++|++|++.+.- ..|.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~-~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFS-QFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT--SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHH-hcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 4688999999999999999997 899999988875422 699999999999999987753 3456666665
Q ss_pred EE
Q 018927 284 DV 285 (349)
Q Consensus 284 ~~ 285 (349)
+.
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.99 E-value=4.5e-05 Score=53.70 Aligned_cols=68 Identities=16% Similarity=0.332 Sum_probs=44.7
Q ss_pred CeEEEcCCCCCCCHHHH----HHHhhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 116 KTIWIGDLFHWMDETFL----HNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L----~~~f~~~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
..|+|.|||.+.+-..| +.++..|| .|.+| +| +.|+|.|.+.+.|++|.+.|+|..+ .+..|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~~---~tAilrF~~~~~A~RA~KRmegEdV--fG~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------SG---GTAILRFPNQEFAERAQKRMEGEDV--FGNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--S--SSS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------eC---CEEEEEeCCHHHHHHHHHhhccccc--ccceEE
Confidence 36999999998887654 56666776 67666 11 6799999999999999999999988 556666
Q ss_pred ccccc
Q 018927 191 LNWAT 195 (349)
Q Consensus 191 ~~~~~ 195 (349)
+.+..
T Consensus 71 v~~~~ 75 (90)
T PF11608_consen 71 VSFSP 75 (90)
T ss_dssp EESS-
T ss_pred EEEcC
Confidence 65543
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.98 E-value=2e-05 Score=70.33 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~--------~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
.....+|||-+|+..+++.+|.++|..||.|. .|+|.+|++|++.|+-|.|.|.|...|..|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45667899999999999999999999999775 4788999999999999999999999999999999999995
Q ss_pred CCCccccccccc
Q 018927 184 NTDQPFRLNWAT 195 (349)
Q Consensus 184 ~~~~~i~~~~~~ 195 (349)
+ ..|+|..+.
T Consensus 143 g--n~ikvs~a~ 152 (351)
T KOG1995|consen 143 G--NTIKVSLAE 152 (351)
T ss_pred C--CCchhhhhh
Confidence 5 666665554
No 154
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.97 E-value=6.1e-06 Score=72.89 Aligned_cols=70 Identities=23% Similarity=0.453 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G--~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
...+|||||-|++|++||.+.+...| .+.++++..++.+|.+||||+|...+..+.++.++.|-.+.|.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 34689999999999999999998877 77889999999999999999999999999999999888887754
No 155
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=2.9e-05 Score=72.91 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=65.2
Q ss_pred CcceeccCCCCC------CCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC-Cee
Q 018927 208 DLSIFVGDLAPD------VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRP 280 (349)
Q Consensus 208 ~~~l~V~nl~~~------~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~ 280 (349)
...|+|.|+|.- .-..-|.++|+ ++|.|....++.+.++ ..+||.|++|++..+|+.|++.|||+.|+ .++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfs-k~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFS-KAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHH-hhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 457889998862 23355678996 9999999999999775 49999999999999999999999999987 778
Q ss_pred EEEEEcCC
Q 018927 281 MRIDVATP 288 (349)
Q Consensus 281 i~v~~a~~ 288 (349)
+.|+.-+.
T Consensus 136 f~v~~f~d 143 (698)
T KOG2314|consen 136 FFVRLFKD 143 (698)
T ss_pred EEeehhhh
Confidence 88765433
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.86 E-value=3.6e-05 Score=58.15 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=39.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~ 180 (349)
+.|+|.+++..++.++|++.|+.||.|..|.+.+.. ..|||.|.+.+.|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999999887754 36999999999999999877544
No 157
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.84 E-value=2.9e-05 Score=66.10 Aligned_cols=104 Identities=18% Similarity=0.389 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCccccccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCC
Q 018927 167 RAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246 (349)
Q Consensus 167 ~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~ 246 (349)
..-|+.|...|++... .++.+++.|+.. ..|+|.||...++.|.|...|+ .||.|+...++.| +
T Consensus 4 rt~ae~ak~eLd~~~~--~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~-~fg~~e~av~~vD-~ 67 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFP--KGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFR-RFGPIERAVAKVD-D 67 (275)
T ss_pred ccHHHHHHHhcCCCCC--CCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhh-hcCccchheeeec-c
Confidence 4467788888999988 677788877652 3799999999999999999996 9999999888888 4
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCeE----eCCeeEEEEEc
Q 018927 247 TGRTKGYGFVRFGDENERSRAMTEMNGVY----CSSRPMRIDVA 286 (349)
Q Consensus 247 ~~~~~g~afV~F~~~~~A~~A~~~l~g~~----~~g~~i~v~~a 286 (349)
.++..+-++|+|...-.|.+|++.++..- ..+++.-|...
T Consensus 68 r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 68 RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 48888999999999999999999886433 34555555443
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.77 E-value=3.5e-05 Score=70.09 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=57.5
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEc---CCCCC----------cceEEEEEeCCHHHHHHHHHH
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID---SNTGR----------TKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d---~~~~~----------~~g~afV~F~~~~~A~~A~~~ 270 (349)
+.-++++|.+.|||.+-.-+.|.++|+ .+|.|+.|+|+.. +.+.+ .+-+|+|+|+..+.|.+|.+.
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg-~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFG-TVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhh-cccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 345788999999999999999999998 9999999999865 22221 245799999999999999988
Q ss_pred hCC
Q 018927 271 MNG 273 (349)
Q Consensus 271 l~g 273 (349)
|+.
T Consensus 306 ~~~ 308 (484)
T KOG1855|consen 306 LNP 308 (484)
T ss_pred hch
Confidence 864
No 159
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.73 E-value=9.1e-05 Score=64.18 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=54.5
Q ss_pred HHHHHHHHhccCCCeeeeEEEEcCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 222 DSILQETFSSKYPSVKGAKVIIDSNTGRT-KGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 222 ~~~l~~~F~~~~G~v~~v~i~~d~~~~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
++++++.+ ++||.|.+|.|+.++.-... ---.||+|+..++|.+|+-.|||.+|+||.++..|-...
T Consensus 300 ede~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 46778888 59999999988877543222 124799999999999999999999999999998886543
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=9.5e-05 Score=48.32 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=42.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al 174 (349)
+.|-|.+.+.+..+ ++...|..||+|.++.+.... .+.||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 56889999987765 455588899999998887333 58999999999999985
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.65 E-value=0.00012 Score=64.79 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=65.2
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCC--CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G--~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
...++||+||-|.+|++||.+.+. ..| .+.+++++.++.+|.+||||+|-..+..+.++.++.|-.++|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~-S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQ-STGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHH-hhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 446899999999999999999885 555 4667788888889999999999999999999999999999998765444
No 162
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.64 E-value=4.8e-05 Score=68.06 Aligned_cols=81 Identities=21% Similarity=0.449 Sum_probs=70.1
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 114 ETKTIW-IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 114 ~~~~l~-V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++| |++|+..+++++|+..|..+|.|..+++..+..++.++||+||.|.+...+..++.. ....+ .++++++.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~ 259 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLRLE 259 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCcccccc
Confidence 344455 999999999999999999999999999999999999999999999999999999976 66666 66777777
Q ss_pred ccccC
Q 018927 193 WATFS 197 (349)
Q Consensus 193 ~~~~~ 197 (349)
+..+.
T Consensus 260 ~~~~~ 264 (285)
T KOG4210|consen 260 EDEPR 264 (285)
T ss_pred cCCCC
Confidence 66654
No 163
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.62 E-value=2.5e-05 Score=66.64 Aligned_cols=65 Identities=17% Similarity=0.358 Sum_probs=54.6
Q ss_pred HHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 223 ~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
++|...|.++||+|+++.|..... ..-+|-+||.|...++|++|++.||+.++.|++|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 566677756999999987775432 45578999999999999999999999999999999988744
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.54 E-value=4.1e-05 Score=65.16 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=61.1
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCC--------CCcc----eEEEEEeCCHHHHHHHHHHhCCeE
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT--------GRTK----GYGFVRFGDENERSRAMTEMNGVY 275 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~--------~~~~----g~afV~F~~~~~A~~A~~~l~g~~ 275 (349)
.-.||+++||+.++..-|+++|+ .||.|-+|.+-....+ |.++ .-|.|+|.+...|.++.+.||+..
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~-~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILS-QYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHH-hccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 35799999999999999999997 9999999988765444 2222 347899999999999999999999
Q ss_pred eCCee
Q 018927 276 CSSRP 280 (349)
Q Consensus 276 ~~g~~ 280 (349)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98875
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.49 E-value=9.1e-05 Score=63.10 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC--------CCccc----eEEEEeCCHHHHHHHHHHhCCCC
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT--------GQSEG----YGFVEFYSRAAAEKVLQSYSGSL 181 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~--------g~~kg----~afV~f~~~~~A~~Al~~l~g~~ 181 (349)
.+-.||+++||+.++-..|+++|..||.|-.|.|-....+ |.++. -+.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999999999876544 33333 36799999999999999999999
Q ss_pred CCCCC
Q 018927 182 MPNTD 186 (349)
Q Consensus 182 ~~~~~ 186 (349)
|.|..
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 96644
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.44 E-value=0.00023 Score=46.48 Aligned_cols=52 Identities=15% Similarity=0.415 Sum_probs=40.9
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHH
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (349)
+.|-|.+.+.+..+..|+ +|. .||+|.++.+... +-+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~-~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFA-SFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHH-hcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 357788888777766555 775 7999999887622 238999999999999985
No 167
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.38 E-value=0.0002 Score=65.30 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEec---CCC--CCc--------cceEEEEeCCHHHHHHHHHHhCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN---KQT--GQS--------EGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~---~~~--g~~--------kg~afV~f~~~~~A~~Al~~l~g 179 (349)
...++|.+-|||.+-..+.|.++|..+|.|..|+|.+- ..+ +.. +-+|+|+|+..+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999875 222 222 45799999999999999998865
Q ss_pred CCCCCCCccccc
Q 018927 180 SLMPNTDQPFRL 191 (349)
Q Consensus 180 ~~~~~~~~~i~~ 191 (349)
...+..+.++++
T Consensus 309 e~~wr~glkvkL 320 (484)
T KOG1855|consen 309 EQNWRMGLKVKL 320 (484)
T ss_pred hhhhhhcchhhh
Confidence 544334444443
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00013 Score=68.63 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=59.3
Q ss_pred CCCCeEEEcCCCCC--CCHH----HHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 113 DETKTIWIGDLFHW--MDET----FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 113 ~~~~~l~V~nLp~~--~te~----~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
.....|+|-|+|-- ..-+ -|..+|+++|+|+.+.+..+..+| .+||.|++|.+..+|..|++.|||+.|+...
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45568999999842 1222 356889999999999999887554 9999999999999999999999999987433
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.32 E-value=0.0011 Score=49.39 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=50.3
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeE-EEEcC------CCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCe-
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK-VIIDS------NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR- 279 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~-i~~d~------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~- 279 (349)
.+.|.|-+.|...+. .|.++|+ .||+|.+.. +.++. ..........|+|++..+|.+|| ..||..|.|.
T Consensus 6 ~~wVtVFGfp~~~~~-~Vl~~F~-~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPSASN-QVLRHFS-SFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GGGHH-HHHHHHH-CCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CeEEEEEccCHHHHH-HHHHHHH-hcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 446888899988554 5557885 999998764 11100 00122348999999999999999 8899999875
Q ss_pred eEEEEEcCC
Q 018927 280 PMRIDVATP 288 (349)
Q Consensus 280 ~i~v~~a~~ 288 (349)
.+-|.+.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 556887743
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.13 E-value=0.002 Score=50.86 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=45.2
Q ss_pred HHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCC
Q 018927 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (349)
Q Consensus 224 ~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 291 (349)
+|.+.|. .||+|.=+|+.-+ .-+|+|.+-+.|.+|+ .++|..++|+.|+|+..++.=-
T Consensus 52 ~ll~~~~-~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFA-QYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHH-CCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE------
T ss_pred HHHHHHH-hCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccHH
Confidence 6677886 8999988887743 4799999999999999 9999999999999999887543
No 171
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.10 E-value=0.00062 Score=64.64 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=66.3
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe---CCeeE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRPM 281 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~---~g~~i 281 (349)
...++.|||.||-..+|.-.|+.++...+|.|++..| | +-|.+|||.|.+.++|.+.+.+|||..+ +.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 4456789999999999999999999867777877732 3 2356899999999999999999999776 58899
Q ss_pred EEEEcCCC
Q 018927 282 RIDVATPK 289 (349)
Q Consensus 282 ~v~~a~~~ 289 (349)
.+.|....
T Consensus 515 ~adf~~~d 522 (718)
T KOG2416|consen 515 IADFVRAD 522 (718)
T ss_pred Eeeecchh
Confidence 99998764
No 172
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.08 E-value=0.0012 Score=62.22 Aligned_cols=73 Identities=10% Similarity=0.272 Sum_probs=57.4
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhc-cCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC--eEeCCeeEEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSS-KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMRI 283 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~-~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~i~v 283 (349)
..+.|.|+.||..+..|+|+-+|+. .+..+.+|++-.+.+ =||+|++..||+.|.+.|.. ++|-|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4457888999999999999999962 467888998876532 59999999999999887763 5567777665
Q ss_pred EEc
Q 018927 284 DVA 286 (349)
Q Consensus 284 ~~a 286 (349)
++.
T Consensus 247 RIK 249 (684)
T KOG2591|consen 247 RIK 249 (684)
T ss_pred hhh
Confidence 543
No 173
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0019 Score=60.58 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=61.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~-~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 176 (349)
...+..+|||||+||.-++-++|..+|+ .||.|..+-|=.|.+-+-.||-|=|.|.+..+-.+||++
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4456889999999999999999999999 699999999988877788999999999999999999964
No 174
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.03 E-value=0.0014 Score=58.09 Aligned_cols=79 Identities=13% Similarity=0.318 Sum_probs=58.4
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHhhccCCeEEEEEEecCCCC-Cccce--EEEEeCCHHHHHHHHHHhCCCCCCCC
Q 018927 115 TKTIWIGDLFHWMDETF----L--HNCFSHTGQVVNVKVIRNKQTG-QSEGY--GFVEFYSRAAAEKVLQSYSGSLMPNT 185 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~----L--~~~f~~~G~i~~~~~~~~~~~g-~~kg~--afV~f~~~~~A~~Al~~l~g~~~~~~ 185 (349)
..-|||-+|++.+-.++ | .++|.+||.|..|.|-+...+- ...+. .||.|.+.++|.+||...+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D-- 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD-- 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc--
Confidence 34579999998877666 2 4899999999998776643221 11122 499999999999999999999994
Q ss_pred Cccccccccc
Q 018927 186 DQPFRLNWAT 195 (349)
Q Consensus 186 ~~~i~~~~~~ 195 (349)
++.++..+..
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 5666665543
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.00 E-value=0.0032 Score=42.20 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=43.9
Q ss_pred cceeccCCCCCCCHHHHHHHHhccC---CCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKY---PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~---G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (349)
.+|+|++++ +++.++|+.+|. .| ....+|+++-|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~-~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFS-EYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHH-HhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999985 488889999997 66 246688888774 3899999999999999764
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.87 E-value=0.0066 Score=40.67 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~----G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 177 (349)
..+|+|+++. +++.++|+.+|..| + ...|..+.|. -|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999995 58888999999999 4 4578888875 3899999999999999764
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.68 E-value=0.011 Score=41.85 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=42.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~ 178 (349)
.....+|. .|.+....||.++|+.||.| .|..+.|. -|||...+.+.|..|+..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 33455665 99999999999999999997 56666663 59999999999999998775
No 178
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.60 E-value=0.0092 Score=51.19 Aligned_cols=62 Identities=18% Similarity=0.334 Sum_probs=55.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~ 178 (349)
..|||.||...++.+.|..-|+.||+|..-.++.|. .++..+-++|+|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 679999999999999999999999999877666664 67888899999999999999998773
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.59 E-value=0.0057 Score=45.53 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=49.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEE-EEecC------CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVK-VIRNK------QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~-~~~~~------~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
..+-|.|-+.|.. ....|.+.|++||+|.+.. +.++. ..........|.|.++.+|.+||. .||..+.+ .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g-~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG-S 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT-C
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC-c
Confidence 4567889999987 5567888999999998875 11110 001122588999999999999996 59988753 2
Q ss_pred cccccccc
Q 018927 187 QPFRLNWA 194 (349)
Q Consensus 187 ~~i~~~~~ 194 (349)
..+-+.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 33444443
No 180
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.49 E-value=0.004 Score=62.12 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
....++.+||++|..++.-..|...|..||.|..|.+-... .||||.|++...+..|++.+-|..|.+-.+.++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 34577889999999999999999999999999988775543 699999999999999999999999999889999
Q ss_pred cccccc
Q 018927 191 LNWATF 196 (349)
Q Consensus 191 ~~~~~~ 196 (349)
++++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 998874
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.43 E-value=0.0025 Score=60.72 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCC-CCCcc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP-NTDQP 188 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~-~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~-~~~~~ 188 (349)
....++.|||.||-.-+|.-.|+.++. .+|.|++.||-+ .|..|||.|.+.++|.+.+..|+|..+. +..+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456778999999999999999999999 567777775433 2367999999999999999999998875 34455
Q ss_pred cccccc
Q 018927 189 FRLNWA 194 (349)
Q Consensus 189 i~~~~~ 194 (349)
|.++|.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 555544
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.41 E-value=0.013 Score=41.46 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=41.7
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (349)
...||+ .|..+...||.++|+ .||.|. |.++-|. -|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFs-pfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFS-PFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCC-CCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhc-cCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 456665 999999999999997 999874 6666552 599999999999999988763
No 183
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.33 E-value=0.0098 Score=57.60 Aligned_cols=109 Identities=13% Similarity=0.238 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
....+|||+|+...+..+-++.++..||.|.+++... |+|++|.......+|+..++-..+++.....+++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4556899999999999999999999999998875543 8999999999999999988888886666666654
Q ss_pred ccccCCCCCc-----------cccCCCcceeccCCCCCCCHHHHHHHHh
Q 018927 193 WATFSGSDRR-----------TEACSDLSIFVGDLAPDVTDSILQETFS 230 (349)
Q Consensus 193 ~~~~~~~~~~-----------~~~~~~~~l~V~nl~~~~t~~~l~~~F~ 230 (349)
.......... ......+-++|.+++..+.+....+.|.
T Consensus 109 ~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 109 EQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 2221111110 0111134577888888777777766663
No 184
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.32 E-value=0.0052 Score=55.68 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=61.1
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCC---CCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~---~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
.|.|.||.+.+|.+.+..+|. ..|.|..++|+..... ......|||.|.|...+..|- .|.++.|-++.|.|...
T Consensus 9 vIqvanispsat~dqm~tlFg-~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFG-NLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHh-hccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 799999999999999999997 9999999988753221 234568999999999999887 66667766776666554
Q ss_pred CC
Q 018927 287 TP 288 (349)
Q Consensus 287 ~~ 288 (349)
-.
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 33
No 185
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.25 E-value=0.0054 Score=56.11 Aligned_cols=77 Identities=23% Similarity=0.463 Sum_probs=60.3
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCe-EeCCeeEEEEEcC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV-YCSSRPMRIDVAT 287 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~-~~~g~~i~v~~a~ 287 (349)
.+||++||.+.++..||+.+|.+ .-.-.+-.++. ..||+||...+...|.+|++.++|+ ++.|+.+.|..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~-ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGD-AKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhcc-ccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 37999999999999999999973 21111112222 2479999999999999999999985 4789999999998
Q ss_pred CCCCC
Q 018927 288 PKKAS 292 (349)
Q Consensus 288 ~~~~~ 292 (349)
+++.+
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 88644
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.20 E-value=0.044 Score=41.58 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=50.0
Q ss_pred cceeccCCCCCCCHHHHHHHHhccC-CCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~-G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 277 (349)
..+.+...|+.++-++|..+.. .+ ..|..++|++|.. .++-.++++|.+.++|++-.+.+||+.+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~-~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGA-PFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhh-cccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3455555666677777766654 44 4577889998743 46778999999999999999999998874
No 187
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.14 E-value=0.015 Score=50.83 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=49.1
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCCCcc-ceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSE-GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 129 e~~L~~~f~~~G~i~~~~~~~~~~~g~~k-g~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
|+++++-+++||.|..|.|..+...-... ---||+|+..++|.+|+-.|||+.+ .++.++..|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cceeeehee
Confidence 45788899999999999888775332222 2379999999999999999999999 556565444
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.12 E-value=0.0021 Score=57.26 Aligned_cols=80 Identities=18% Similarity=0.347 Sum_probs=62.4
Q ss_pred cceeccCCCCCCCHHHHH---HHHhccCCCeeeeEEEEcCC--CC-CcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 209 LSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSN--TG-RTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~---~~F~~~~G~v~~v~i~~d~~--~~-~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
..+||-+|+..+.++++. +.|. .||.|..|.+..+.. .+ ....-++|+|...++|..||...+|..++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfg-qygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFG-QYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccc-ccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457888888877665553 5776 889999888887652 11 1112389999999999999999999999999999
Q ss_pred EEEcCCC
Q 018927 283 IDVATPK 289 (349)
Q Consensus 283 v~~a~~~ 289 (349)
..+.+.+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8888776
No 189
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.01 E-value=0.0034 Score=53.84 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=45.8
Q ss_pred HHHHHHhh-ccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 130 TFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 130 ~~L~~~f~-~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
++|...|+ +||+|+++.|..+. .-...|-+||.|...++|++|+..||+..+ .+++|...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeee
Confidence 34444444 89999999776643 234557899999999999999999999999 555555443
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.00 E-value=0.094 Score=39.82 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
..+..+.+...|+.++.++|..+.+.+- .|..++|++|.. .++-.+.++|.+.+.|....+.+||+.+.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344555556666777777877766654 677889998753 35567899999999999999999999873
No 191
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.98 E-value=0.0092 Score=55.48 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=57.9
Q ss_pred ceeccCCCCCC-CHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 210 SIFVGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 210 ~l~V~nl~~~~-t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
.|-+.-++..+ |-++|...|. .||+|..|.|-.. .-.|.|+|.+..+|-+|. ..++..|++|.|+|.|-++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA-~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFA-QFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhh-hcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 34444455544 5588999997 9999999877543 226999999999998887 7899999999999999888
Q ss_pred CC
Q 018927 289 KK 290 (349)
Q Consensus 289 ~~ 290 (349)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.53 E-value=0.014 Score=48.56 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=50.6
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhcc-CCCe---eeeEEEEcCCC--CCcceEEEEEeCCHHHHHHHHHHhCCeEeCC--
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSK-YPSV---KGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYCSS-- 278 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~-~G~v---~~v~i~~d~~~--~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-- 278 (349)
...+|.|++||+.+||+++.+.++ . ++.- ..+.-..+..+ .....-|||.|.+.++...-+..++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~-~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQIS-PWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCS-S--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhh-hhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 345899999999999999998775 4 5554 23331222211 1223569999999999999999999987732
Q ss_pred ---eeEEEEEcCC
Q 018927 279 ---RPMRIDVATP 288 (349)
Q Consensus 279 ---~~i~v~~a~~ 288 (349)
....|++|--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3456666654
No 193
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.45 E-value=0.28 Score=43.29 Aligned_cols=177 Identities=11% Similarity=0.173 Sum_probs=103.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecC-------CCCCccceEEEEeCCHHHHHHHH----HHhCC
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-------QTGQSEGYGFVEFYSRAAAEKVL----QSYSG 179 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~-------~~g~~kg~afV~f~~~~~A~~Al----~~l~g 179 (349)
+...+|.|...|+..+++--++...|.+||+|++|+++.+. .+.+......+-|-+.+.+-... ..|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999999876 11223345788899988775432 33332
Q ss_pred CCCCCCCccccccccccCCC-----CC---c-------------cccCCCcceeccCCCCCC-CHHHHHHHHh--ccCC-
Q 018927 180 SLMPNTDQPFRLNWATFSGS-----DR---R-------------TEACSDLSIFVGDLAPDV-TDSILQETFS--SKYP- 234 (349)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~-----~~---~-------------~~~~~~~~l~V~nl~~~~-t~~~l~~~F~--~~~G- 234 (349)
.+-......+.+.+....-. .. . ......+.|.|. +...+ +++-+.+.+. ..-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCC
Confidence 22111333444443331100 00 0 112233456553 22333 3333333331 0112
Q ss_pred ---CeeeeEEEEcCC--CCCcceEEEEEeCCHHHHHHHHHHhCC--eEeC-CeeEEEEEcCC
Q 018927 235 ---SVKGAKVIIDSN--TGRTKGYGFVRFGDENERSRAMTEMNG--VYCS-SRPMRIDVATP 288 (349)
Q Consensus 235 ---~v~~v~i~~d~~--~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~-g~~i~v~~a~~ 288 (349)
.+++|.|+.... ..-++-||.++|-+..-|.+.++.|.- ...+ .+..-|.++..
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~ 231 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPH 231 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCc
Confidence 367777774322 223567999999999999999887763 3333 44455555443
No 194
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.31 E-value=0.013 Score=58.30 Aligned_cols=75 Identities=24% Similarity=0.266 Sum_probs=64.5
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe--CCeeEEEEEcC
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVAT 287 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~i~v~~a~ 287 (349)
+..+.|.+...+..-|..+|+ .||.|.+++.++|-+ +|.|+|.+.+.|..|+++|+|+++ -|-+.+|.+|+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s-~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCS-DYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHH-hhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 455566666788899999997 999999999988754 799999999999999999999886 48899999998
Q ss_pred CCCC
Q 018927 288 PKKA 291 (349)
Q Consensus 288 ~~~~ 291 (349)
.-.-
T Consensus 373 ~~~~ 376 (1007)
T KOG4574|consen 373 TLPM 376 (1007)
T ss_pred cccc
Confidence 8543
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.07 E-value=0.018 Score=47.79 Aligned_cols=71 Identities=11% Similarity=0.075 Sum_probs=45.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEEEec-CCCC-CccceEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSH-TGQV---VNVKVIRN-KQTG-QSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~-~G~i---~~~~~~~~-~~~g-~~kg~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
....+|.|+.||+.+||+++.+.+.. ++.. ..+.-... .... ....-|||.|.+.+++......++|..+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 45569999999999999999987776 6655 22221121 1111 12246999999999999999999997653
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.04 E-value=0.082 Score=44.14 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=45.7
Q ss_pred CHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC--CeEeCCeeEEEEEcCCCC
Q 018927 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 221 t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~i~v~~a~~~~ 290 (349)
..+.|+++|. .|+.+..+.+++. -+-..|.|.+.++|.+|...|+ +..+.|..++|.|+....
T Consensus 8 ~~~~l~~l~~-~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFS-TYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHH-TT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHH-hcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999997 9998887776643 2358999999999999999999 999999999999996543
No 197
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.63 E-value=0.14 Score=35.84 Aligned_cols=59 Identities=12% Similarity=0.274 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHhccCCC-----eeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 218 PDVTDSILQETFSSKYPS-----VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~-----v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++..+|..++. ..+. |-+|+|..+ |+||+-.. +.|..+++.|++..+.|+.|+|+.|
T Consensus 11 dg~~~~~iv~~i~-~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAIC-NEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHH-TCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHH-hccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4688899999997 4433 445665532 89999874 4788999999999999999999875
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.61 E-value=0.1 Score=48.59 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=58.9
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 277 (349)
++.|+|-.+|..+|-.||..|+....-.|.+++|++|.. ..+-..+|+|.+.++|..-.+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 678999999999999999999974445689999999743 45668999999999999999999998874
No 199
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.40 E-value=0.057 Score=42.79 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=40.0
Q ss_pred HHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 131 FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 131 ~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
+|.+.|..||++.-++++.+ .-+|+|.+-++|.+|+. ++|..+.+....|++
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 56778888999888887765 38999999999999995 899999544444443
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.33 E-value=0.11 Score=40.62 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=52.1
Q ss_pred CCcceeccCCCCCC----CHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 207 SDLSIFVGDLAPDV----TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 207 ~~~~l~V~nl~~~~----t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
+=.+|.|+=|..++ +-..+...++ .||.|.+|...- + --|.|.|+|..+|=+|+.++.. ..-|..+.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls-~fGpI~SVT~cG-----r--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLS-VFGPIQSVTLCG-----R--QSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHH-hcCCcceeeecC-----C--ceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 34567776554443 3345556675 899999998762 2 2599999999999999988885 56688888
Q ss_pred EEEcC
Q 018927 283 IDVAT 287 (349)
Q Consensus 283 v~~a~ 287 (349)
+.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 87743
No 201
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.20 E-value=0.096 Score=49.89 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=50.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~--~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~ 178 (349)
....|.|+|+.||..+-+|+++.||+. |-++.+|.+-.+. -=||+|++..+|..|.+.|.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 446678899999999999999999986 7788999887654 26999999999999986553
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.95 E-value=0.031 Score=55.66 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=64.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccccc
Q 018927 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~ 196 (349)
+.++.|.+-..+-.-|..+|.+||.|.+.+.+++. ..|.|+|.+.+.|..|++.+.|+.+..-+.+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34555566678888999999999999999999987 479999999999999999999999877788888888774
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.53 E-value=0.047 Score=39.47 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=44.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccccCCCCCc----cccCCCcceeccCCCCCCCHHHHHHHH
Q 018927 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR----TEACSDLSIFVGDLAPDVTDSILQETF 229 (349)
Q Consensus 160 afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~l~V~nl~~~~t~~~l~~~F 229 (349)
|+|+|.+..-|.+.++. ..+.+......+++........... ......++|.|.|||..+++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999963 3333333333333332222111111 223456789999999999999998777
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.48 E-value=0.65 Score=43.41 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=58.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
.+.|.|-.+|..+|..||..|...+- .|.++++++|.. ..+=.+.|+|.+.++|....+.+||+.+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998754 789999999642 233458899999999999999999998743
No 205
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.79 Score=44.21 Aligned_cols=130 Identities=14% Similarity=0.215 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 112 NDETKTIWIGDLFHW-MDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~-~te~~L~~~f~~~----G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
...+++|-|-||.|+ +...+|.-+|..| |.|.+|.|+... || .+.|....+.|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-------FG-------------keRM~eEeV~G-- 228 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-------FG-------------KERMKEEEVHG-- 228 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-------hh-------------HHHhhhhcccC--
Confidence 457789999999984 6788999888876 588999888753 22 11122222211
Q ss_pred ccccccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHH
Q 018927 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (349)
.++.+.-.. . ..... . .+...-++-.+.-+. .|+ +..++ .-||.|+|.+.+.|..
T Consensus 229 P~~el~~~~-e-~~~~s------~-----sD~ee~~~~~~~kLR-~Yq-~~rLk----------YYyAVvecDsi~tA~~ 283 (650)
T KOG2318|consen 229 PPKELFKPV-E-EYKES------E-----SDDEEEEDVDREKLR-QYQ-LNRLK----------YYYAVVECDSIETAKA 283 (650)
T ss_pred Chhhhcccc-c-cCccc------c-----cchhhhhhHHHHHHH-HHH-hhhhe----------eEEEEEEecCchHHHH
Confidence 111111000 0 00000 0 111111122234443 443 22222 2389999999999999
Q ss_pred HHHHhCCeEeC--CeeEEEEEcCC
Q 018927 267 AMTEMNGVYCS--SRPMRIDVATP 288 (349)
Q Consensus 267 A~~~l~g~~~~--g~~i~v~~a~~ 288 (349)
..+.|+|..+. +..|-++|.-.
T Consensus 284 vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 284 VYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred HHHhcCcceeccccceeeeeecCC
Confidence 99999999997 55666666544
No 206
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.20 E-value=0.24 Score=38.93 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCCCCeEEEcCCCCCCC----HHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 112 NDETKTIWIGDLFHWMD----ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~t----e~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
...-.+|.|+=|..++. -..+...++.||+|.+|.+.-. --|.|.|+|..+|.+|+.++.... -+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~---pgt 152 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRA---PGT 152 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCC---CCc
Confidence 34456788876654443 3345566778999999977543 359999999999999999887643 345
Q ss_pred ccccccc
Q 018927 188 PFRLNWA 194 (349)
Q Consensus 188 ~i~~~~~ 194 (349)
.+...|.
T Consensus 153 m~qCsWq 159 (166)
T PF15023_consen 153 MFQCSWQ 159 (166)
T ss_pred eEEeecc
Confidence 5666664
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.03 E-value=0.73 Score=31.39 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 219 ~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.++-++++..|. .|+ .. +|..|+. | -||.|.+.++|+++.+..+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr-~y~-~~--~I~~d~t-----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLR-KYR-WD--RIRDDRT-----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHh-cCC-cc--eEEecCC-----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 577899999996 886 33 4444532 3 489999999999999999999888777654
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.68 E-value=0.077 Score=47.58 Aligned_cols=76 Identities=8% Similarity=0.220 Sum_probs=55.5
Q ss_pred CeEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEEecCC----CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 116 KTIWIGDLFHWMDETFLH---NCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~---~~f~~~G~i~~~~~~~~~~----~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
+-+||-+|+.....+++. ++|..||.|..|.+.++.. .+-. .-+||+|...++|..||...+|..+++..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~-- 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRA-- 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhh--
Confidence 457888888766555443 7888999999998888762 1111 12899999999999999999999885543
Q ss_pred cccccc
Q 018927 189 FRLNWA 194 (349)
Q Consensus 189 i~~~~~ 194 (349)
++..+.
T Consensus 155 lka~~g 160 (327)
T KOG2068|consen 155 LKASLG 160 (327)
T ss_pred hHHhhC
Confidence 444443
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.05 E-value=0.07 Score=51.92 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=62.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+..++||+|+.+.+..+-++.++. .+|.|.++.... |||++|.....+.+|+..|+-..++|..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~-~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILA-KSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHh-hCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 34567999999999999999999996 999988776542 99999999999999999999999999888777
Q ss_pred Ec
Q 018927 285 VA 286 (349)
Q Consensus 285 ~a 286 (349)
..
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 64
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.79 E-value=0.57 Score=41.47 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=46.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
..=|-|-++++.-. ..|..+|++||+|++..... +| .+-+|.|.++.+|.+||. .+|+.|++
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALs-kng~ii~g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALS-KNGTIIDG 258 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhh-hcCeeecc
Confidence 34466778877543 46778999999998774442 22 589999999999999996 58888854
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.14 E-value=0.45 Score=39.77 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=43.3
Q ss_pred CHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCCCCCCccccccccc
Q 018927 128 DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 128 te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~--g~~~~~~~~~i~~~~~~ 195 (349)
..+.|+++|..++.+..+..++.. +-..|.|.+.++|.+|...|+ +..+ .+..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEcc
Confidence 357899999999999888888765 458999999999999999988 7766 45557776664
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.12 E-value=1.3 Score=39.26 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=55.3
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCe-eEEEEEc
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-PMRIDVA 286 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~i~v~~a 286 (349)
..-|.|-++++.-..-. ..+|. +||+|.+.... ..--+-+|+|.++-+|++|| ..||+.|+|. .|-|+.+
T Consensus 197 D~WVTVfGFppg~~s~v-L~~F~-~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSIV-LNLFS-RCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccchhHH-HHHHH-hhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeec
Confidence 34577778887766554 46775 99999865433 12238999999999999999 7799999864 5678887
Q ss_pred CCCCC
Q 018927 287 TPKKA 291 (349)
Q Consensus 287 ~~~~~ 291 (349)
.+|.-
T Consensus 268 tDksv 272 (350)
T KOG4285|consen 268 TDKSV 272 (350)
T ss_pred CCHHH
Confidence 77643
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.19 E-value=0.18 Score=47.20 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=61.1
Q ss_pred CCCCCeEEEcCCCCCC-CHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 112 NDETKTIWIGDLFHWM-DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~-te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
....+.|-+.-+|+.. |-++|...|..||+|..|.+-... -.|.|+|.+..+|-+|. +.++..| .++.|+
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avl--nnr~iK 439 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVL--NNRFIK 439 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-cccccee--cCceeE
Confidence 3455667777777655 467899999999999999775542 35999999999998887 4688888 778999
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
+.|..+..
T Consensus 440 l~whnps~ 447 (526)
T KOG2135|consen 440 LFWHNPSP 447 (526)
T ss_pred EEEecCCc
Confidence 99987653
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.53 E-value=2.1 Score=29.21 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC
Q 018927 125 HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (349)
Q Consensus 125 ~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~ 182 (349)
..++-++|+..|..|+- .+|+.|+ + | -||.|.+..+|+++....++..+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEE
Confidence 35678899999999963 3445565 3 3 48999999999999999888776
No 215
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=86.26 E-value=2 Score=32.40 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHhcc--CCCeeeeEEEEcCCCCCcceEEEEEeCCH
Q 018927 216 LAPDVTDSILQETFSSK--YPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (349)
Q Consensus 216 l~~~~t~~~l~~~F~~~--~G~v~~v~i~~d~~~~~~~g~afV~F~~~ 261 (349)
-|+.+|-.+|+++|+|. |-.|.+-.+.+|.-...+-..||.-|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 47889999999999863 44566555666543334456888888654
No 216
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.25 E-value=5.2 Score=35.12 Aligned_cols=93 Identities=12% Similarity=0.269 Sum_probs=53.5
Q ss_pred eEEEEEEecCCCCCccceEEEEeC----CHHHHHHHHHHhCCCCCCCC--Cccccc-------------cccccCCCC--
Q 018927 142 VVNVKVIRNKQTGQSEGYGFVEFY----SRAAAEKVLQSYSGSLMPNT--DQPFRL-------------NWATFSGSD-- 200 (349)
Q Consensus 142 i~~~~~~~~~~~g~~kg~afV~f~----~~~~A~~Al~~l~g~~~~~~--~~~i~~-------------~~~~~~~~~-- 200 (349)
..+|+|... ..-||.|+ +.....+.+..|+|..+... .-+++| +|...-...
T Consensus 67 ~dsckires-------nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kd 139 (445)
T KOG2891|consen 67 FDSCKIRES-------NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKD 139 (445)
T ss_pred ccceeeccc-------ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhh
Confidence 345666543 25677775 34445566777888765332 223333 232211000
Q ss_pred --CccccCCCcceeccCCCCC------------CCHHHHHHHHhccCCCeeeeEEE
Q 018927 201 --RRTEACSDLSIFVGDLAPD------------VTDSILQETFSSKYPSVKGAKVI 242 (349)
Q Consensus 201 --~~~~~~~~~~l~V~nl~~~------------~t~~~l~~~F~~~~G~v~~v~i~ 242 (349)
.-.......+||+.+||.. -+++.|+..| +.||.|..|.|+
T Consensus 140 mdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~-eafg~ir~vdip 194 (445)
T KOG2891|consen 140 MDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAF-EAFGEIRNVDIP 194 (445)
T ss_pred hhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHH-HHhccceecCCc
Confidence 0011122357888888864 3578899999 599999988776
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.69 E-value=0.83 Score=39.91 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=46.7
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEEEe-----cCCCCCcc-----ce---------EEE
Q 018927 114 ETKTIWIGDLFHW------------MDETFLHNCFSHTGQVVNVKVIR-----NKQTGQSE-----GY---------GFV 162 (349)
Q Consensus 114 ~~~~l~V~nLp~~------------~te~~L~~~f~~~G~i~~~~~~~-----~~~~g~~k-----g~---------afV 162 (349)
...+||+.+||-. -+|+.|+..|+.||.|..|.|.. ..-+|+.. || |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 4457888888731 36888999999999998887753 22344432 33 355
Q ss_pred EeCCHHHHHHHHHHhCCCCC
Q 018927 163 EFYSRAAAEKVLQSYSGSLM 182 (349)
Q Consensus 163 ~f~~~~~A~~Al~~l~g~~~ 182 (349)
.|........|+..|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 66666667777777777654
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.22 E-value=12 Score=25.91 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHhhccC-----CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 125 HWMDETFLHNCFSHTG-----QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 125 ~~~te~~L~~~f~~~G-----~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
..++..+|..++...+ .|-.|.|.. .|+||+-.. +.|+.+++.|++..+ .++.++++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~--~gk~v~ve 72 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKI--KGKKVRVE 72 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--S--SS----EE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCC--CCeeEEEE
Confidence 5678889999998764 455666655 378998775 478889999999988 45555543
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=74.13 E-value=13 Score=32.92 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=35.1
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHH
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~ 262 (349)
.-|+++||+.++.-.||+..+. +-+.+ -..|-.. .+.|-||+.|-+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr-~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELR-KRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHH-hcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 4699999999999999999996 55532 1233222 34678999998854
No 220
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=73.54 E-value=6.3 Score=31.51 Aligned_cols=117 Identities=12% Similarity=0.007 Sum_probs=66.0
Q ss_pred EEEcCCC--CCCCHHHHHHHhhc-cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 118 IWIGDLF--HWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 118 l~V~nLp--~~~te~~L~~~f~~-~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
..|+.+. ...+-..|...+.. ++....+.+..-. .++..+.|.+.+++.++++. ....+ .+..+.+..-
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~-~p~~~--~~~~~~l~~W 89 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG-GPWNF--NGHFLILQRW 89 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec-ccccc--cccchhhhhh
Confidence 4444442 34556666666654 3333234443322 16889999999999998852 33333 2333333222
Q ss_pred ccCCC-CCccccCCCcceeccCCCCC-CCHHHHHHHHhccCCCeeeeEEEE
Q 018927 195 TFSGS-DRRTEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVII 243 (349)
Q Consensus 195 ~~~~~-~~~~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~~G~v~~v~i~~ 243 (349)
.+... ..........-|.|.|||.. .+++-|+.+.+ .+|++.++...+
T Consensus 90 ~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~-~iG~~i~vD~~t 139 (153)
T PF14111_consen 90 SPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGS-KIGEPIEVDENT 139 (153)
T ss_pred cccccccccceeccchhhhhccCCHHHhhhHHHHHHHH-hcCCeEEEEcCC
Confidence 21111 11111122334778899987 67778888886 999998776543
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=72.19 E-value=27 Score=30.93 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=38.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHH
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~ 169 (349)
......-|+++||+.++--.||+..+.+.+.+ -+.|.... ..|-||+.|-+...
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg----~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG----HFGKCFLHFGNRKG 379 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeec----CCcceeEecCCccC
Confidence 33445569999999999999999999987743 34443322 33679999987643
No 222
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=71.48 E-value=17 Score=36.80 Aligned_cols=69 Identities=6% Similarity=0.115 Sum_probs=48.8
Q ss_pred ceeccCCC--CCCCHHHHHHHHhccCCCe-----eeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 210 SIFVGDLA--PDVTDSILQETFSSKYPSV-----KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 210 ~l~V~nl~--~~~t~~~l~~~F~~~~G~v-----~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
++|| |+- ..++..+|..++. .-+.| -.|+|.. .|.||+.. .+.|...++.|++..+.|+.|.
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~-~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIA-NEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHH-hhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceE
Confidence 3555 333 4577778877776 44434 3455542 38899986 5568888999999999999999
Q ss_pred EEEcCCC
Q 018927 283 IDVATPK 289 (349)
Q Consensus 283 v~~a~~~ 289 (349)
|+.++..
T Consensus 557 ~~~~~~~ 563 (629)
T PRK11634 557 MQLLGDA 563 (629)
T ss_pred EEECCCC
Confidence 9998643
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=70.72 E-value=16 Score=26.15 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=42.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 018927 117 TIWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~-~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 177 (349)
.-|+-.++...+..+|++.++. || .|.+|..+.-+ .+ .--|||.+...+.|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHhh
Confidence 3455567889999999999998 55 67777776654 22 234999999988888776543
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.37 E-value=12 Score=34.69 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i-~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 176 (349)
+-...|-|.++|.....+||...|+.|+.- -+|+++.|. .||..|.+...|..||..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 345678999999999999999999999742 245555553 699999999999999953
No 225
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=67.05 E-value=13 Score=28.29 Aligned_cols=46 Identities=13% Similarity=0.406 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHhccCCCeeeeEEEE----cCCCCCcceEEEEEeCCHHHHH
Q 018927 219 DVTDSILQETFSSKYPSVKGAKVII----DSNTGRTKGYGFVRFGDENERS 265 (349)
Q Consensus 219 ~~t~~~l~~~F~~~~G~v~~v~i~~----d~~~~~~~g~afV~F~~~~~A~ 265 (349)
.++.+||++-+++-|-.-.++.++. .-..|++.|||.| |++.|.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 5788899988886675544443332 2345788899976 56665544
No 226
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=66.97 E-value=5.4 Score=32.84 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=36.5
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCeEeCCe-eEEEEEcCCCCCC
Q 018927 250 TKGYGFVRFGDENERSRAMTEMNGVYCSSR-PMRIDVATPKKAS 292 (349)
Q Consensus 250 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~i~v~~a~~~~~~ 292 (349)
+.++.-|.|.+.+.|.+|...++...|.|. .++.-++.+.-..
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~ 93 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPE 93 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCcc
Confidence 345678999999999999999999999988 8999998876544
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.84 E-value=32 Score=32.09 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=44.7
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCC-eeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~-v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (349)
-.+.|-|.++|.....+||...|. .|+. =.+|.++-|. +||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~-~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFE-TYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHH-HhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 446789999999998889999996 7764 3456666552 799999999999999944
No 228
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=64.90 E-value=2 Score=41.38 Aligned_cols=70 Identities=7% Similarity=0.065 Sum_probs=53.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~ 182 (349)
..+|+||++|+++.++-.+|..+++.+--+..+.+.........+.+..|.|+---....|+.+|++..+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 4568899999999999999999999987666666655443445556788999876666667767777655
No 229
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=64.70 E-value=26 Score=31.34 Aligned_cols=81 Identities=7% Similarity=0.124 Sum_probs=60.2
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCC-------CCCcceEEEEEeCCHHHHHHHH----HHhC--C
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN-------TGRTKGYGFVRFGDENERSRAM----TEMN--G 273 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~-------~~~~~g~afV~F~~~~~A~~A~----~~l~--g 273 (349)
..+.|.+.|+..+++-..+...|. +||.|++|+++.+.. ..+...-..+.|-+.+.+..-. ..|. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv-~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFV-KFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhh-ccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 456789999999999888889996 999999999997751 1223456899999998876543 2333 2
Q ss_pred eEeCCeeEEEEEcCC
Q 018927 274 VYCSSRPMRIDVATP 288 (349)
Q Consensus 274 ~~~~g~~i~v~~a~~ 288 (349)
..+....|.|.|..-
T Consensus 93 ~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 93 TKLKSESLTLSFVSL 107 (309)
T ss_pred HhcCCcceeEEEEEE
Confidence 456788888888764
No 230
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=64.59 E-value=28 Score=24.52 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=41.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Q 018927 117 TIWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~-~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 176 (349)
.-|+-.++.+.+..+|+..++. |+ .|.+|..+.-+ . ..--|||.+...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHh
Confidence 3566678889999999999998 55 66777666554 2 223499999888887766544
No 231
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=63.28 E-value=1.6 Score=41.93 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=54.8
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 281 (349)
..++||+.|+.+.++-++|..+|+ .+..+..+-+-.+..-..-..+.+|+|.-.-.-..|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck-~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCK-GIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhc-cCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 346799999999999999999996 77666655544332222334578999988888888888889877654443
No 232
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=63.09 E-value=78 Score=29.70 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=29.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCeEeC--CeeEEEEEcC
Q 018927 252 GYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVAT 287 (349)
Q Consensus 252 g~afV~F~~~~~A~~A~~~l~g~~~~--g~~i~v~~a~ 287 (349)
-||.|++.+.+.+......|+|.++. +..+.++|.-
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 38999999999999999999998886 4455566543
No 233
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=62.25 E-value=45 Score=32.89 Aligned_cols=93 Identities=12% Similarity=0.293 Sum_probs=59.8
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCCCCC------Ccc---ccccccccCCCCCc-----cccCCCcceeccCCCCCCCHHH
Q 018927 159 YGFVEFYSRAAAEKVLQSYSGSLMPNT------DQP---FRLNWATFSGSDRR-----TEACSDLSIFVGDLAPDVTDSI 224 (349)
Q Consensus 159 ~afV~f~~~~~A~~Al~~l~g~~~~~~------~~~---i~~~~~~~~~~~~~-----~~~~~~~~l~V~nl~~~~t~~~ 224 (349)
-||+++.+....+-..+.|+...+-.. .+- |.=...++...++. .+......+|+.+|+.++.++-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 599999999988888877776654211 111 10011111112211 3344567899999999999998
Q ss_pred HHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCC
Q 018927 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (349)
Q Consensus 225 l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~ 260 (349)
-.+++. ....+++++|++. ||| |||+-
T Consensus 318 Q~~~ir-sipGlEna~i~rp-------gYA-IEYD~ 344 (621)
T COG0445 318 QEQIIR-SIPGLENAEILRP-------GYA-IEYDY 344 (621)
T ss_pred HHHHHH-hCcccccceeecc-------cee-eeecc
Confidence 888886 7777888888753 566 66653
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=61.45 E-value=31 Score=24.73 Aligned_cols=57 Identities=9% Similarity=0.181 Sum_probs=40.9
Q ss_pred eeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (349)
-|+-.++...+..+|++.+..-|| .|.+|+.+.-+. ..--|||++....+|.+....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 444467889999999999864565 477777765532 233699999998888876544
No 235
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.34 E-value=18 Score=24.77 Aligned_cols=63 Identities=10% Similarity=0.127 Sum_probs=43.2
Q ss_pred HHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 223 SILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 223 ~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
++|++.|. ..| .|..+.-+..+.+...--.-||+.+...+..+ .++=+.+++..|+|+....+
T Consensus 2 ~~I~~~L~-~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELK-DQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHH-HcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46667775 444 67777777776666677788999887766333 44556788888888775543
No 236
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=58.28 E-value=17 Score=36.95 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=4.0
Q ss_pred HHHHHHHhC
Q 018927 264 RSRAMTEMN 272 (349)
Q Consensus 264 A~~A~~~l~ 272 (349)
...||+.+.
T Consensus 804 vt~ACEE~r 812 (1102)
T KOG1924|consen 804 VTAACEELR 812 (1102)
T ss_pred HHHHHHHHH
Confidence 344454443
No 237
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=57.10 E-value=27 Score=34.14 Aligned_cols=17 Identities=18% Similarity=0.593 Sum_probs=8.4
Q ss_pred EeCCHHHHHHHHHHhCC
Q 018927 257 RFGDENERSRAMTEMNG 273 (349)
Q Consensus 257 ~F~~~~~A~~A~~~l~g 273 (349)
.+.+.++-++-+.++++
T Consensus 513 ki~n~~~~~~~m~km~~ 529 (742)
T KOG4274|consen 513 KIDNNEDRKKDMSKMKS 529 (742)
T ss_pred cCCCcHHHHhhhhhccC
Confidence 34445555555555553
No 238
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=56.79 E-value=44 Score=23.51 Aligned_cols=57 Identities=9% Similarity=0.166 Sum_probs=40.5
Q ss_pred eeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (349)
-|+-.++.+.+..+|++.+...|+ .|.+|+.+.-+. ..--|||++..-++|.+.-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 455578889999999988864565 477777665432 233699999888887766443
No 239
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=53.79 E-value=3.9 Score=41.50 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccC
Q 018927 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTG 140 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~-~te~~L~~~f~~~G 140 (349)
.-.+|+|+|.+||.+ .++++|.++|.+.+
T Consensus 205 ~~ssRTvlis~LP~~~~~~e~L~~~~~kl~ 234 (827)
T COG5594 205 NLSSRTVLISGLPSELRSDEELKELFDKLK 234 (827)
T ss_pred CCCCceEEeecCChhhcCchhHHHHHhhcC
Confidence 457889999999965 46778999999864
No 240
>PRK11901 hypothetical protein; Reviewed
Probab=51.83 E-value=36 Score=31.02 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=44.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEE--EeCCHHHHHHHHHHhCCCC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFV--EFYSRAAAEKVLQSYSGSL 181 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV--~f~~~~~A~~Al~~l~g~~ 181 (349)
+....+|-|..+ .+++.|..|.++++ +..+++++...+|+.- |..| .|.+.++|..|+..|-...
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHH
Confidence 344445555544 46888999998886 4667777766555442 4333 5999999999999876543
No 241
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=51.31 E-value=31 Score=34.32 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=53.4
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
+||+.+--..-+..-+..++. .++.+....++.....+..-+-++++|.....+..|. .|-++.+..+.++
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~-~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~k 583 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSE-KKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLK 583 (681)
T ss_pred ceecccccccCCCcchhhCcc-cccccccceeeccccCCCcCCchhhhhcCCcchhhhh-cccccccccccee
Confidence 678887777777777878884 8888888888887777776678999999998887765 5555555444443
No 242
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=50.93 E-value=8.6 Score=27.85 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHh
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCF 136 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f 136 (349)
-..++|.|.|||...+|++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 466899999999999999998765
No 243
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.33 E-value=20 Score=27.42 Aligned_cols=38 Identities=16% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCH
Q 018927 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (349)
Q Consensus 220 ~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~ 261 (349)
.+.++|++.|+ .|..++ ++.+.+.. .++|+++|+|...
T Consensus 29 ~~~~~l~~~l~-~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLA-EFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHH-H---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred cCHHHHHHHHH-hcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 35588999997 687764 66666643 5789999999763
No 244
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=50.05 E-value=7.7 Score=36.01 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=51.8
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHhhc--cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Q 018927 114 ETKTIWIGDLFHWMDET--------FLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~--------~L~~~f~~--~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~ 175 (349)
..+.+|+.+.....+.+ ++...|.. .+++..+...+|..+..++|..|++|...+.+.+++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34667888887666555 89999998 6788899999988778889999999999999999884
No 245
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=49.71 E-value=69 Score=23.24 Aligned_cols=45 Identities=9% Similarity=-0.060 Sum_probs=33.4
Q ss_pred HHHHHHHhhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 018927 129 ETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (349)
Q Consensus 129 e~~L~~~f~~~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 177 (349)
.+.++++++.+| +++++.+.....+ ....+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD----~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYD----FVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCC----EEEEEEcCCHHHHHHHHHHH
Confidence 345778888876 8888888765443 67889999999888776443
No 246
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=49.22 E-value=56 Score=24.27 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHhccCCCeeeeEEEEcC----CCCCcceEEEEEeCCHHHHHH
Q 018927 219 DVTDSILQETFSSKYPSVKGAKVIIDS----NTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 219 ~~t~~~l~~~F~~~~G~v~~v~i~~d~----~~~~~~g~afV~F~~~~~A~~ 266 (349)
..+..+|++.+...|+.=.+..++..- ..++++|||.| |+|.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 567788887777677743343333322 23456677755 455555443
No 247
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=48.30 E-value=21 Score=33.11 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=49.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEEecCCC--CCccceEEEEeCCHHHHHHHHHHhCCCCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~-i~~~~~~~~~~~--g~~kg~afV~f~~~~~A~~Al~~l~g~~~ 182 (349)
...+.|-|..||+..++.+|.+-+..+-+ +....+...... ..-.+.|||.|...++.......++|..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45678999999999999999888887642 333333321101 11236799999999998888888888764
No 248
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.47 E-value=25 Score=26.97 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=26.8
Q ss_pred CCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCC-HHHHHHHHH
Q 018927 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS-RAAAEKVLQ 175 (349)
Q Consensus 127 ~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~-~~~A~~Al~ 175 (349)
++.++|++.|..|..+ .++.+.++. -+.|++.|+|.+ -..-..|++
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 3557899999999876 455666542 567899999965 444455553
No 249
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=47.30 E-value=20 Score=32.76 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=26.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCC
Q 018927 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (349)
Q Consensus 254 afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 291 (349)
|||+|++.++|..|++.+.... .+.++|+.|-+.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998655433 35567777766543
No 250
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.44 E-value=43 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.4
Q ss_pred HHHHHHhhccCCeEEEEEEe
Q 018927 130 TFLHNCFSHTGQVVNVKVIR 149 (349)
Q Consensus 130 ~~L~~~f~~~G~i~~~~~~~ 149 (349)
.+||++|+..|+|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999997766644
No 251
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=43.80 E-value=43 Score=22.99 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=42.2
Q ss_pred HHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 223 SILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 223 ~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
++|++.|. .+| .+..++-+..++++.+--.-+|+.....+-.. .|+=+.|+++.+.|+....
T Consensus 2 ~~I~~~L~-~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALK-DIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHH-HcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 35667775 565 67788877777766666788888876643333 4555678899988876443
No 252
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.92 E-value=51 Score=32.39 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=31.1
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 159 ~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
||.|+|.+.+.|.+..+.++|..+......+-+.|-.
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 7899999999999999999999997777666665543
No 253
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=40.87 E-value=37 Score=28.00 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=36.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEEecCCCC--CccceEEEEeCCHHHHHHHHHH
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQS 176 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~-~G~i~~~~~~~~~~~g--~~kg~afV~f~~~~~A~~Al~~ 176 (349)
+++|.. .|++.|.++..= -|.+..+.+.+.. .+ ..+|-.||.|.+.+.|.+.++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455554 455544444322 1678887766543 33 6778999999999999887754
No 254
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=40.09 E-value=80 Score=25.21 Aligned_cols=55 Identities=11% Similarity=0.220 Sum_probs=37.1
Q ss_pred eeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHH
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (349)
-|+-.++...+..+|++.+...|+ .|..|..+.-+. | .--|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 445567889999999988854465 466776665433 2 225999998777655443
No 255
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=39.86 E-value=82 Score=22.40 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=23.1
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCeEe
Q 018927 249 RTKGYGFVRFGDENERSRAMTEMNGVYC 276 (349)
Q Consensus 249 ~~~g~afV~F~~~~~A~~A~~~l~g~~~ 276 (349)
.-+||-|||=.+..+..+|++.+.+...
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccceee
Confidence 4689999999999999999988776543
No 256
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.55 E-value=38 Score=23.16 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=31.5
Q ss_pred HHHHHHhhccC-CeEEEEEEecCCCCCccceEEEEeCCHHH
Q 018927 130 TFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169 (349)
Q Consensus 130 ~~L~~~f~~~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~ 169 (349)
++|++-|...| +|.++.-+..+.++.....-||+.+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~ 42 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN 42 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc
Confidence 57888888888 78888888877677777888999877654
No 257
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=38.84 E-value=27 Score=30.15 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEE
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV 145 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~ 145 (349)
......+||+-|||..+|++.|..+.+.+|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34577899999999999999999999999855443
No 258
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=38.27 E-value=88 Score=24.55 Aligned_cols=46 Identities=17% Similarity=0.414 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHhccCC-CeeeeEEE----EcCCCCCcceEEEEEeCCHHHHH
Q 018927 219 DVTDSILQETFSSKYP-SVKGAKVI----IDSNTGRTKGYGFVRFGDENERS 265 (349)
Q Consensus 219 ~~t~~~l~~~F~~~~G-~v~~v~i~----~d~~~~~~~g~afV~F~~~~~A~ 265 (349)
..+..||++.+...|+ .=.++.++ +.-..+.+.|||.| |++.+.|.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 5677888888876777 22222222 22233566777765 45555433
No 259
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=38.20 E-value=39 Score=31.38 Aligned_cols=67 Identities=15% Similarity=0.311 Sum_probs=46.8
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCC-eeeeEEEEcCCC--CCcceEEEEEeCCHHHHHHHHHHhCCeEe
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~-v~~v~i~~d~~~--~~~~g~afV~F~~~~~A~~A~~~l~g~~~ 276 (349)
.++.|.+||+.+++++|.+.+. .+.. |....+.....+ ..-.+.+||.|.+.++...-.+.++|..+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~-p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQIN-PFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcC-CCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4788999999999999998885 6543 333333321111 12257899999999997777777888665
No 260
>PRK10905 cell division protein DamX; Validated
Probab=37.71 E-value=58 Score=29.60 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=40.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCcc-ceEEEEeCCHHHHHHHHHHhCCC
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE-GYGFVEFYSRAAAEKVLQSYSGS 180 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~k-g~afV~f~~~~~A~~Al~~l~g~ 180 (349)
...+|-|+.+ .+++.|++|..+.| +....++....+|+.. -.-|=.|.+.++|++|++.|-..
T Consensus 246 ~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 246 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 3344555544 46789999998885 4555565555455432 11223599999999999987543
No 261
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=37.70 E-value=63 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCCCccceEEEEeCC
Q 018927 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (349)
Q Consensus 141 ~i~~~~~~~~~~~g~~kg~afV~f~~ 166 (349)
+|.+++|.+-...|+.++||-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47889998877679999999999986
No 262
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=36.85 E-value=1.2e+02 Score=22.61 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=30.2
Q ss_pred HHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHH
Q 018927 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (349)
Q Consensus 222 ~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (349)
+.+|..+++ .+| |.+..|..|.. .+.=||++++.|.++..++|
T Consensus 26 WPE~~a~lk-~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 26 WPELLALLK-EAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred cHHHHHHHH-HcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHH
Confidence 356778886 777 66667776643 34569999999777666555
No 263
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.65 E-value=1.1e+02 Score=24.89 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=39.9
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
++.| +|+..+.++.|.++. |.+|.|.+. +.+ .-.+-|-+.+...+|++.+.
T Consensus 114 ~iRv-~l~~~i~~erl~ei~-E~~gvI~Ef----ee~------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 114 TIRV-KLKKPIQEERLQEIS-EWHGVIFEF----EED------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred eEEE-ecCccchHHHHHHHH-HHhceeEEe----cCC------cEEEEeccHHHHHHHHHHHH
Confidence 5666 899999999999999 689977654 212 24788899999999998764
No 264
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=36.20 E-value=62 Score=26.78 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=34.6
Q ss_pred cceeccCCCCCCCHHHHHHHHhccC-CCeeeeEEEEcCCC-CCcceEEEEEeCCHHHHHHHHH
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKY-PSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMT 269 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~-G~v~~v~i~~d~~~-~~~~g~afV~F~~~~~A~~A~~ 269 (349)
+++|.. .|++.|.++.. .- |.+..|..-...+. ...+|-.||+|.+.+.|.+.++
T Consensus 112 r~v~~K-----~td~ql~~l~q-w~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQ-WASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred hhhhcc-----CCHHHHHHHHH-HhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 455554 66666666552 22 46666554432221 1457899999999999988774
No 265
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=35.43 E-value=65 Score=23.64 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCCCccceEEEEeCC
Q 018927 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (349)
Q Consensus 141 ~i~~~~~~~~~~~g~~kg~afV~f~~ 166 (349)
+|++|++.+-...|+-|+||-|.|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47888888776678999999999987
No 266
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.33 E-value=45 Score=22.94 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.0
Q ss_pred EEEEEeCCHHHHHHHHHHhCCeEe
Q 018927 253 YGFVRFGDENERSRAMTEMNGVYC 276 (349)
Q Consensus 253 ~afV~F~~~~~A~~A~~~l~g~~~ 276 (349)
+.+|.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999888775443
No 267
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.93 E-value=71 Score=29.12 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=34.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHh
Q 018927 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230 (349)
Q Consensus 160 afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~ 230 (349)
|||.|++..+|..|++.+..... ..+++..+.. .+-|.=.||..+..+..+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~APe-----------P~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAPE-----------PDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCCC-----------cccccccccCCChHHHHHHHHHH
Confidence 79999999999999986554432 2233333221 11244457766666666666554
No 268
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=33.46 E-value=2.3e+02 Score=22.05 Aligned_cols=69 Identities=6% Similarity=0.076 Sum_probs=44.7
Q ss_pred ceeccCCCCC---CCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 210 SIFVGDLAPD---VTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 210 ~l~V~nl~~~---~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
.|.|+..... .+-+.+.+.+. .-| .++++.. +. +-..|+|.+.++-.+|.+.|....-++..|.+..
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~-~~gI~~ksi~~--~~------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLD-ANGIHIKSITP--EN------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHH-HCCCCcceEEe--eC------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 4555544222 56788888886 554 3444332 21 2588999999999999888875554556666666
Q ss_pred cC
Q 018927 286 AT 287 (349)
Q Consensus 286 a~ 287 (349)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 54
No 269
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=32.56 E-value=23 Score=29.28 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=50.7
Q ss_pred CCCCeEEEcCCCCCC-CHH----HHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 113 DETKTIWIGDLFHWM-DET----FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~-te~----~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
+-..++++.+|+..+ ++. ....+|..|.+.....+++.. ++.-|.|.+++.|..|...+++..+.+..
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~- 80 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKN- 80 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCc-
Confidence 445567788887543 222 334566666666666666544 56789999999999999999999886543
Q ss_pred cccccccc
Q 018927 188 PFRLNWAT 195 (349)
Q Consensus 188 ~i~~~~~~ 195 (349)
.++.-++.
T Consensus 81 ~~k~yfaQ 88 (193)
T KOG4019|consen 81 ELKLYFAQ 88 (193)
T ss_pred eEEEEEcc
Confidence 44444443
No 270
>PRK11901 hypothetical protein; Reviewed
Probab=32.49 E-value=89 Score=28.54 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=40.1
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEE--EEEeCCHHHHHHHHHHhCC
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYG--FVRFGDENERSRAMTEMNG 273 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~a--fV~F~~~~~A~~A~~~l~g 273 (349)
..++|-|..+ .+++.|..|.. +++ +..+++..-...|+.. |. |=.|.+.++|.+|+..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~-~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAK-KQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHH-HcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 4456666554 45788888885 665 5566666544445443 33 3468999999999988753
No 271
>PF14893 PNMA: PNMA
Probab=32.35 E-value=49 Score=30.50 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEE---cCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe--CCeeE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII---DSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPM 281 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~---d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~i 281 (349)
..+.|.|.+||.++++++|.+.+....-.+-..+|.. .++. ..--++|+|...-+-... -.+| .|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~~n~~~i-----P~~i~g~gg~W 89 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAEDVNYSLI-----PREIPGKGGPW 89 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccccchhhC-----chhcCCCCCce
Confidence 3457999999999999999998863232333344431 1111 123689999754332111 1223 46677
Q ss_pred EEEEcCCCCCC
Q 018927 282 RIDVATPKKAS 292 (349)
Q Consensus 282 ~v~~a~~~~~~ 292 (349)
+|-+..+....
T Consensus 90 ~Vv~~p~~~D~ 100 (331)
T PF14893_consen 90 RVVFKPPAPDA 100 (331)
T ss_pred EEEecCCCCCH
Confidence 77776665443
No 272
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=32.20 E-value=90 Score=22.36 Aligned_cols=45 Identities=11% Similarity=0.302 Sum_probs=28.6
Q ss_pred CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe-C-CeeEEEEEc
Q 018927 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-S-SRPMRIDVA 286 (349)
Q Consensus 235 ~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~-~-g~~i~v~~a 286 (349)
.|++|+|..-...++-++||-|+|.+ ++ .+++..+ . ...+.|.+-
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd------~f-~I~~ikVieg~~GlFVaMP 48 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD------CF-VIHDIKVIEGEKGLFVAMP 48 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT------TE-EEEEEEEEEETTEEEEE--
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC------EE-EEEeEEEEECCCCcEEECC
Confidence 36788887766668899999999987 22 4555443 2 334555553
No 273
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.18 E-value=1.5e+02 Score=23.68 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=36.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHH
Q 018927 117 TIWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~-~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~A 173 (349)
.-|+--++...+..+|++.++. |+ .|..|..+.-+ .|. --|||.+....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~--KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGL--KKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCc--eEEEEEECCCCcHHHH
Confidence 3455557788999999999997 55 56666555543 222 2499999776665443
No 274
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.22 E-value=9.1 Score=35.95 Aligned_cols=78 Identities=6% Similarity=-0.111 Sum_probs=59.8
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
.+.|+..++...+++++.-+| +.||.|..+.+-+....+..+-.+||+-.. .++..+|..+.-..+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~-~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKH-EDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhc-cCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 467888999999999999999 599999887766555556666678887653 456777777666677788888888755
No 275
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=30.55 E-value=1.7e+02 Score=21.86 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Q 018927 130 TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (349)
Q Consensus 130 ~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~ 175 (349)
.+|.++++.+| |.+..|..|..+ ..-|||+++.|.+..-+++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHHh
Confidence 36778899998 566666665422 34799999997776666653
No 276
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.78 E-value=34 Score=31.96 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=48.4
Q ss_pred CcceeccCCCCCCCHH--------HHHHHHhcc--CCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHH
Q 018927 208 DLSIFVGDLAPDVTDS--------ILQETFSSK--YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~--------~l~~~F~~~--~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (349)
.+.+|+.+.....+.+ ++...|. . ++.+..++.-+|......+|..|++|...+.|.+.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p-~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFP-PHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCC-CcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3568887777665554 9999995 6 6778888888877567788999999999999999873
No 277
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.70 E-value=2e+02 Score=19.79 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 018927 130 TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (349)
Q Consensus 130 ~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~ 178 (349)
++|++.+..+| +...++.-.- -| ++.|+-+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG-~G---~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG-GG---PTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS-SS---SEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC-CC---CeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 4444443320 02 578888889999988887663
No 278
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.67 E-value=3e+02 Score=22.12 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=39.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---CCeEEEEEEecCCC---------CCccc-eEEEEeCCHHH
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHT---GQVVNVKVIRNKQT---------GQSEG-YGFVEFYSRAA 169 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~---G~i~~~~~~~~~~~---------g~~kg-~afV~f~~~~~ 169 (349)
.+|++.-+...++|++.++..++- +++.+|.+-+.+.. ...+. |-+|.|++-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 688999999999999999988764 56777777654422 12233 88899987554
No 279
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=28.60 E-value=1e+02 Score=22.57 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=20.4
Q ss_pred CeeeeEEEEcCCCCCcceEEEEEeCC
Q 018927 235 SVKGAKVIIDSNTGRTKGYGFVRFGD 260 (349)
Q Consensus 235 ~v~~v~i~~d~~~~~~~g~afV~F~~ 260 (349)
+|++|+|..-...|+-++||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47778777654557889999999987
No 280
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=28.47 E-value=4.6e+02 Score=24.17 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=60.9
Q ss_pred eEEEc---CCCCCCCHHHHHHH----hhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 117 TIWIG---DLFHWMDETFLHNC----FSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 117 ~l~V~---nLp~~~te~~L~~~----f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
+|-+. |.+++-+-|.++.. +++||--.++++.+--. .++|-+-|.|.-.-. +.+....+...++..
T Consensus 111 ~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~-----~~l~~i~l~~~g~i~ 183 (326)
T cd00874 111 TVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS-----KLLPPLLLEERGEIE 183 (326)
T ss_pred EEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc-----cCCCcceeecCCCeE
Confidence 45443 34566666666654 46788666777766422 233445565543211 011111111111111
Q ss_pred cccccccCCCCCccccCCCcceeccCCCCCCCHHHHH---HHHhccCCCeeeeEEEEcCCCCCcceEEEEEeC
Q 018927 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~---~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~ 259 (349)
+ -.-..++.+||..+.+..+. +.|. +. ...++.+..+...+.+.|++++-+.
T Consensus 184 ~----------------irg~~~~~~l~~~va~r~~~~a~~~L~-~~-~~~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 184 K----------------IRGISHAANLPPHVAERQAEAAAALLR-KA-LGLQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred E----------------EEEEEEEccCCHHHHHHHHHHHHHHHh-hc-cCCCeEEEEEecCCCCCCEEEEEEE
Confidence 1 11156788999988776554 4453 41 2235566666555778888876665
No 281
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.26 E-value=46 Score=19.60 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhhccC
Q 018927 125 HWMDETFLHNCFSHTG 140 (349)
Q Consensus 125 ~~~te~~L~~~f~~~G 140 (349)
.++++++|++.|....
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998754
No 282
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.73 E-value=2.4e+02 Score=22.62 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=38.1
Q ss_pred cceeccCCCCCCCHHHHHHHHhcc--CCCeeeeEEEEcCCC---------CCcce-EEEEEeCCHHH
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSK--YPSVKGAKVIIDSNT---------GRTKG-YGFVRFGDENE 263 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~--~G~v~~v~i~~d~~~---------~~~~g-~afV~F~~~~~ 263 (349)
.+|++.-+...+++++.++..+.. -+++.+|.+-+..+. ...+. |-+|.|++-+.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 589999999999999999998732 345666665443321 12233 88999988654
No 283
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=27.12 E-value=2.7e+02 Score=26.97 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=63.6
Q ss_pred CCHHHHHHHhhccCCeE-EEEEEecCCCCCccceEEEEe---CCHHHHHHHHHHhCCCCCCCCCccccccccccCCCCCc
Q 018927 127 MDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEF---YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR 202 (349)
Q Consensus 127 ~te~~L~~~f~~~G~i~-~~~~~~~~~~g~~kg~afV~f---~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~~~~~ 202 (349)
+..+.|.+.++.|-.+. .+..+.+.. |.-||.= .+..++..||..+.+. +
T Consensus 293 v~~e~i~~~L~~F~gl~HR~e~v~~~~-----gv~f~NDSKATN~~At~~AL~~~~~~-v-------------------- 346 (448)
T COG0771 293 VPPEAILEALSSFTGLPHRLEFVGEKD-----GVLFINDSKATNVDATLAALSGFDGP-V-------------------- 346 (448)
T ss_pred CCHHHHHHHHHhCCCCCcceEEEEecC-----CEEEecCCCCCCHHHHHHHHHcCCCC-E--------------------
Confidence 55677888888875442 344444432 4455542 4566666666654411 1
Q ss_pred cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCC------CcceEEEEEeCCHHHHHHHHHHh
Q 018927 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG------RTKGYGFVRFGDENERSRAMTEM 271 (349)
Q Consensus 203 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~------~~~g~afV~F~~~~~A~~A~~~l 271 (349)
.|.+|+++...+-+.|.++|. .. +..+.++ ..... ...+.-++.+++.++|.......
T Consensus 347 -------~lI~GG~~Kg~df~~L~~~~~-~~--~~~~~~~-G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~ 410 (448)
T COG0771 347 -------ILIAGGDDKGADFSPLAEILA-KV--IKKLVLI-GEDAEKIAAALKEAGPSLVICETLEEAVQLAREL 410 (448)
T ss_pred -------EEEECCCCCCCChhHHHHHhh-hc--ceEEEEe-CCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHh
Confidence 477899999999999999996 43 3333333 11111 11122288889998887766443
No 284
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.57 E-value=2.1e+02 Score=29.71 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=11.9
Q ss_pred CCCcceeccCCCCCCCHH
Q 018927 206 CSDLSIFVGDLAPDVTDS 223 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~ 223 (349)
.+..-+||-.++....+.
T Consensus 293 ~Pavy~FliDVS~~a~ks 310 (887)
T KOG1985|consen 293 QPAVYVFLIDVSISAIKS 310 (887)
T ss_pred CCceEEEEEEeehHhhhh
Confidence 344567887777776665
No 285
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=26.43 E-value=31 Score=36.95 Aligned_cols=12 Identities=25% Similarity=-0.047 Sum_probs=4.8
Q ss_pred HHHHHhhccCCe
Q 018927 131 FLHNCFSHTGQV 142 (349)
Q Consensus 131 ~L~~~f~~~G~i 142 (349)
+++..-+..|.|
T Consensus 1967 ~~~~~~~~lg~~ 1978 (2131)
T KOG4369|consen 1967 PSYTDASVLGQI 1978 (2131)
T ss_pred cccccccccccc
Confidence 333333444443
No 286
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.43 E-value=1.8e+02 Score=18.68 Aligned_cols=54 Identities=13% Similarity=-0.010 Sum_probs=38.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCH----HHHHHHHHH
Q 018927 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR----AAAEKVLQS 176 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~----~~A~~Al~~ 176 (349)
++.|.||.-.--...|++.+...-.|.++.+-... +.+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777777666677889999998889888876554 5688888754 455555554
No 287
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=26.04 E-value=2e+02 Score=27.76 Aligned_cols=61 Identities=25% Similarity=0.326 Sum_probs=38.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc---cCCeEEEEEEecCCCCCccceEE-EEeCCHHHHHHHHHHh
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSH---TGQVVNVKVIRNKQTGQSEGYGF-VEFYSRAAAEKVLQSY 177 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~---~G~i~~~~~~~~~~~g~~kg~af-V~f~~~~~A~~Al~~l 177 (349)
.++|.|..||+.++.+.+.+.+.. -+.+..|.=++|..+. .|+.| |+++....++..+..|
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~--~~vrivI~lk~~~~~~~~~~~L 289 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDR--EGIRFVIELKRGAMAEVVLNGL 289 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCC--CceEEEEEECCCccHHHHHHHH
Confidence 368999999999999988876653 2344444445555332 25666 5666665565555443
No 288
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=26.02 E-value=2.6e+02 Score=20.21 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=33.7
Q ss_pred HHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 222 ~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
.+.+++++....|+++++.+... ..-....+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHHH
Confidence 45677777544567888888754 445788999999998887764443
No 289
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=25.63 E-value=2.5e+02 Score=20.00 Aligned_cols=47 Identities=9% Similarity=0.247 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHhccCCCeeee----EEEEcCCCCCcceEEEEEeCCHHHHH
Q 018927 218 PDVTDSILQETFSSKYPSVKGA----KVIIDSNTGRTKGYGFVRFGDENERS 265 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~v----~i~~d~~~~~~~g~afV~F~~~~~A~ 265 (349)
...+..+|++.+...|+.=.+. .|.+.-..+.+.|||.| |++.+.+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~k 61 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALK 61 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHH
Confidence 4566778887777566542222 22233233456677765 45555544
No 290
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=25.21 E-value=1.2e+02 Score=21.89 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCCCccceEEEEeCC
Q 018927 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (349)
Q Consensus 141 ~i~~~~~~~~~~~g~~kg~afV~f~~ 166 (349)
+|++|+|.+-..+|+-|-|+-|+|.+
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~ 27 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDN 27 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecc
Confidence 47899999888789999899898876
No 291
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=25.15 E-value=3.3e+02 Score=25.24 Aligned_cols=114 Identities=11% Similarity=0.179 Sum_probs=57.1
Q ss_pred CCCCCCCHHHHHHH----hhccCCe---EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 122 DLFHWMDETFLHNC----FSHTGQV---VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 122 nLp~~~te~~L~~~----f~~~G~i---~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
|.+++-+-|.++.. +++||-. .++++.+-- -..+|-+-|.|...- .+.+....+...+...++
T Consensus 119 ~~~~spsvD~~~~v~lP~l~~fG~~~~~~~l~v~rrG--~yP~GgG~V~~~~~~-----~~~l~~i~l~~~G~i~~i--- 188 (341)
T cd00875 119 NSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKRG--VAPGGGGEVGFRCPV-----RKPLTPHLNDSPGRIKRI--- 188 (341)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccceEEEEEecc--CCCCCCEEEEEEecC-----cccccceeeccCCceEEE---
Confidence 45677777777655 5678853 466665532 234455666665221 111222222111211111
Q ss_pred ccCCCCCccccCCCcceeccCCCCCCCHHHH---HHHHhccCCCeeeeEEE--EcCCCCCcceEEEEEeC
Q 018927 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSIL---QETFSSKYPSVKGAKVI--IDSNTGRTKGYGFVRFG 259 (349)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l---~~~F~~~~G~v~~v~i~--~d~~~~~~~g~afV~F~ 259 (349)
.-..|+.+||..+.+..+ ++.+. ++..-.++.+. ...+.+.+.|++.+-+.
T Consensus 189 -------------rG~~~~~~l~~~va~r~~~~a~~~L~-~~~~dv~i~~~~~~~~~~~~~~G~gi~L~a 244 (341)
T cd00875 189 -------------RGVAYSTRVSPSIANRMIDAARGVLN-PFIPDVYIYTDVRKGDNSGKSPGFGISLVA 244 (341)
T ss_pred -------------EEEEEEccCCHHHHHHHHHHHHHHHH-hhCCCceEEEEecccccCCCCCCeEEEEEE
Confidence 125778899998877555 45553 44432222222 22234566777766554
No 292
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=24.98 E-value=1.1e+02 Score=24.11 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=39.0
Q ss_pred HHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcC
Q 018927 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (349)
Q Consensus 222 ~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 287 (349)
|.+|+..| -|.-+..++++... ...-+-++.+.+.. ...++..+.++.+.|++|+|..-.
T Consensus 2 e~~lkAa~--l~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAY--LYNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHH--HHHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 56666666 35555566666442 22235566665555 345677889999999999998764
No 293
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.93 E-value=1.3e+02 Score=21.42 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=22.9
Q ss_pred CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 018927 141 QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 141 ~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g 179 (349)
.|.++....+ .+||-|||=.+.+++..|++.+.+
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 4555544333 569999999999999999976554
No 294
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=24.31 E-value=2.5e+02 Score=21.20 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHhccCCCeeeeEEEEcC----CCCCcceEEEEEeCCHHHHH
Q 018927 218 PDVTDSILQETFSSKYPSVKGAKVIIDS----NTGRTKGYGFVRFGDENERS 265 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~v~i~~d~----~~~~~~g~afV~F~~~~~A~ 265 (349)
...+.++|++.+.+.+|.=.++.++..- ..++++|||-| |.|.+.|.
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~ 80 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAK 80 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHH
Confidence 4567788888887677754444333322 23456677655 45555543
No 295
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=24.26 E-value=1.8e+02 Score=28.82 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHhC
Q 018927 259 GDENERSRAMTEMN 272 (349)
Q Consensus 259 ~~~~~A~~A~~~l~ 272 (349)
++..-++.|++++.
T Consensus 544 ~tl~kce~Alek~~ 557 (742)
T KOG4274|consen 544 KTLQKCEIALEKLK 557 (742)
T ss_pred hhhccccccHhhcc
Confidence 33444555555544
No 296
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.38 E-value=1.7e+02 Score=21.04 Aligned_cols=48 Identities=15% Similarity=0.314 Sum_probs=30.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEe
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f 164 (349)
...-||||+++..+-|.-...+.+..++-.-+-+..+.+ ..||+|-..
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n---eqG~~~~t~ 71 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN---EQGFDFRTL 71 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC---CCCEEEEEe
Confidence 344699999998877766555555555444444444432 458888766
No 297
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=23.35 E-value=1.6e+02 Score=23.71 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=37.4
Q ss_pred eEEEcCCC-CCCCHHHHHHHhhc-cCC-eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 018927 117 TIWIGDLF-HWMDETFLHNCFSH-TGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 117 ~l~V~nLp-~~~te~~L~~~f~~-~G~-i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g 179 (349)
.+|+|+|. ...+-++|+..+.. |+. +.+++..+.+.. +-+.|+|.-+.++..-+..|..
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~----~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPW----NSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccC----ceEEEEEechHHHHHHHHHHhh
Confidence 46778887 33344566666655 333 333444433322 5799999999999888877654
No 298
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.35 E-value=1e+02 Score=20.79 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=24.6
Q ss_pred CCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEE
Q 018927 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFV 162 (349)
Q Consensus 127 ~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV 162 (349)
.-|.+|...|-+--+|.++.|+..+.-++ |-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 34567888888888999999988765443 55555
No 299
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=23.32 E-value=96 Score=32.64 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCceEEccC
Q 018927 313 GARVQGSQSDGESNNATVSPSF 334 (349)
Q Consensus 313 g~~~~~~~~~~~~~~~~~~vgn 334 (349)
|++++|....+-..+...+|||
T Consensus 1204 gsGGYGgsa~~~~~~~Gagvg~ 1225 (1282)
T KOG0921|consen 1204 GSGGYGGSAPSARANYGAGVGN 1225 (1282)
T ss_pred CCCCCCCCCCCCCCCccccccC
Confidence 3333444444445566666665
No 300
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.85 E-value=2.3e+02 Score=22.77 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=29.7
Q ss_pred HHHHHHHhhc----cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 018927 129 ETFLHNCFSH----TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 129 e~~L~~~f~~----~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g 179 (349)
|..+.+.+.. .+ .|.++.+... .+||.||+....+++..+++.+.+
T Consensus 18 E~~V~~~L~~~~~~~~~~i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 18 ERNVALMLAMRAKKENLPIYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555544433 22 2556655443 469999999988888888866543
No 301
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.28 E-value=73 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=26.5
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeee
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA 239 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v 239 (349)
...+||+-|+|...|++-|.++.+ ..|-+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vs-qlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVS-QLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHH-Hhhhhhhe
Confidence 345899999999999999999997 78755443
No 302
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.91 E-value=2.7e+02 Score=18.97 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHhhccC-CeEEEEEEecCCCCCccce-EEEEeC-CHHHHHHHHHHhCC
Q 018927 129 ETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGY-GFVEFY-SRAAAEKVLQSYSG 179 (349)
Q Consensus 129 e~~L~~~f~~~G-~i~~~~~~~~~~~g~~kg~-afV~f~-~~~~A~~Al~~l~g 179 (349)
--++...|+.+| .+..|.-...+ ++.--| -||+++ +.+...+|++.+..
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~--~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSR--RNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCC--CCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 456777888876 55555443332 222223 457776 55566777877654
No 303
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.51 E-value=25 Score=33.71 Aligned_cols=105 Identities=18% Similarity=0.194 Sum_probs=60.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
-.|+|---||+.++--|..+.+.|..-.++.+.-|- ..-||.|+|...-..++ +|....-.++.++-.+..
T Consensus 356 P~IHiYtaPwDSD~Vfifh~isPhH~~~sF~lgfDL------~id~V~feDl~~~~H~l---~g~a~~~~grtf~~Ay~e 426 (508)
T PF00901_consen 356 PQIHIYTAPWDSDYVFIFHCISPHHQNESFFLGFDL------EIDYVHFEDLTVHWHAL---HGGAQEAVGRTFREAYSE 426 (508)
T ss_pred CceEEecCCCCCCcEEEEEeecCcCCCceeEEEEec------ccceEEEEecccccccc---ccccccccCccHHHHHHH
Confidence 357777778877765555555666655666666665 45788888876554444 222222233433332221
Q ss_pred --------cCCCC----CccccCCCcceeccCCCCCCCHHHHHHHH
Q 018927 196 --------FSGSD----RRTEACSDLSIFVGDLAPDVTDSILQETF 229 (349)
Q Consensus 196 --------~~~~~----~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 229 (349)
..... +-.......-||||.++|+++-+.|+.--
T Consensus 427 Ff~~a~~~~~ss~iH~~Rl~RS~~~hPIYlGS~~Y~~sY~ql~~NA 472 (508)
T PF00901_consen 427 FFNLAASHPGSSEIHKRRLQRSRGVHPIYLGSMHYDISYEQLKSNA 472 (508)
T ss_pred HHHHHhcCCCCcHHHHHHHHhccCCCCeeecCcCccccHHHHHHHH
Confidence 11000 00223344569999999999999887654
No 304
>PF14893 PNMA: PNMA
Probab=21.06 E-value=69 Score=29.51 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=33.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEEec---CCCCCccceEEEEeCC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRN---KQTGQSEGYGFVEFYS 166 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~-~G~i~~~~~~~~---~~~g~~kg~afV~f~~ 166 (349)
-+..+.|.|.+||.+|++++|.+.+.. .-++-.++|... +.. ..--|+|+|..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e 71 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAE 71 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeeccc
Confidence 356788999999999999999888765 222222222221 111 12468888875
No 305
>CHL00030 rpl23 ribosomal protein L23
Probab=20.88 E-value=2.5e+02 Score=20.51 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=24.8
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEc
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIID 244 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d 244 (349)
.-|+-.++.+++..+|++.+..-|+ .|.+|..+.-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 3555567889999999999964465 4666766543
No 306
>PF11249 DUF3047: Protein of unknown function (DUF3047); InterPro: IPR021409 This bacterial family of proteins has no known function.
Probab=20.55 E-value=2e+02 Score=23.96 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=25.4
Q ss_pred HHHHHHHhccCCCeeeeEEEEcCCCCCcceEEE
Q 018927 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255 (349)
Q Consensus 223 ~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~af 255 (349)
+|.+++|.+..+.|..|-|+.|.++-..++-|+
T Consensus 145 ~Dy~~~FG~~p~~i~~vai~tDsDnT~~~a~A~ 177 (183)
T PF11249_consen 145 ADYRRAFGEEPPRIVGVAIMTDSDNTGGSARAY 177 (183)
T ss_pred HHHHHHhCCCCCceeEEEEEEEcCCCCCEEEEE
Confidence 788999988888999999999976544444333
No 307
>PLN02690 Agmatine deiminase
Probab=20.36 E-value=4.2e+02 Score=24.98 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=22.8
Q ss_pred eeccCCCCCCCHHHHHHHHhccCCCeeeeEEEE
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVII 243 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~ 243 (349)
|.-.|=.+.+++++|++.|.+.+| |++|.++.
T Consensus 180 lln~nRNP~lsk~~ie~~Lk~~LG-v~kvIWL~ 211 (374)
T PLN02690 180 LLNPNRNPHLTKEEIEEELKEYLG-VEKVIWLP 211 (374)
T ss_pred hcCCCCCCCCCHHHHHHHHHHHhC-CCEEEEeC
Confidence 333456778999999999974455 77776664
No 308
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=20.12 E-value=2.1e+02 Score=19.32 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=21.1
Q ss_pred HHHHHhhc--cCCeEEEEEEecCCCCCccceEE-EEeCCH
Q 018927 131 FLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGF-VEFYSR 167 (349)
Q Consensus 131 ~L~~~f~~--~G~i~~~~~~~~~~~g~~kg~af-V~f~~~ 167 (349)
+|.+.+.. .|.|...++.... |.++ |+|.+.
T Consensus 19 ~l~~~l~~~~~g~I~~fKmtDG~------giG~vv~~~ng 52 (64)
T PF11061_consen 19 ELVDKLGKNPIGTIKGFKMTDGS------GIGVVVEFSNG 52 (64)
T ss_pred HHHHHhccCCcEEEEEEEEecCC------cEEEEEEecCC
Confidence 55566666 8889999887654 6554 777753
Done!