Query 018927
Match_columns 349
No_of_seqs 394 out of 2858
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:12:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 6.5E-39 2.2E-43 276.3 15.8 171 113-291 13-183 (213)
2 1l3k_A Heterogeneous nuclear r 100.0 9.5E-37 3.3E-41 259.1 19.8 179 110-293 8-187 (196)
3 3md3_A Nuclear and cytoplasmic 100.0 2.2E-36 7.4E-41 249.7 19.8 166 116-288 1-166 (166)
4 2qfj_A FBP-interacting repress 100.0 3.5E-36 1.2E-40 259.5 20.1 177 113-292 26-208 (216)
5 1b7f_A Protein (SXL-lethal pro 100.0 5.3E-36 1.8E-40 248.1 19.0 165 114-286 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 1.1E-35 3.8E-40 245.7 20.0 164 115-286 2-167 (167)
7 2cjk_A Nuclear polyadenylated 100.0 3.4E-36 1.2E-40 249.1 12.9 166 114-290 2-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 6.7E-35 2.3E-39 243.0 20.3 168 114-287 2-175 (175)
9 2g4b_A Splicing factor U2AF 65 100.0 2E-33 6.7E-38 233.6 18.5 160 113-287 2-172 (172)
10 2yh0_A Splicing factor U2AF 65 100.0 3E-33 1E-37 237.8 18.4 170 113-292 2-197 (198)
11 1fje_B Nucleolin RBD12, protei 100.0 3.1E-34 1.1E-38 239.2 11.0 167 111-290 9-175 (175)
12 3smz_A Protein raver-1, ribonu 100.0 9.2E-33 3.1E-37 248.3 21.3 173 114-292 94-267 (284)
13 3smz_A Protein raver-1, ribonu 100.0 1.1E-32 3.7E-37 247.8 20.8 157 113-290 20-176 (284)
14 3pgw_A U1-A; protein-RNA compl 100.0 1.5E-32 5E-37 246.7 20.7 166 111-287 5-281 (282)
15 3tyt_A Heterogeneous nuclear r 100.0 5.7E-33 2E-37 237.0 17.0 163 114-286 3-204 (205)
16 2ghp_A U4/U6 snRNA-associated 100.0 8.9E-33 3.1E-37 249.3 16.5 172 114-290 116-292 (292)
17 2ghp_A U4/U6 snRNA-associated 100.0 2.8E-32 9.5E-37 246.1 17.8 186 109-338 35-221 (292)
18 2adc_A Polypyrimidine tract-bi 100.0 9E-32 3.1E-36 234.2 19.7 165 112-289 31-228 (229)
19 1qm9_A Polypyrimidine tract-bi 100.0 7.6E-32 2.6E-36 229.4 15.3 163 114-289 2-197 (198)
20 3sde_A Paraspeckle component 1 100.0 2.4E-31 8.3E-36 236.0 19.0 161 111-292 18-182 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 7.2E-26 2.5E-30 185.4 14.2 147 144-293 2-154 (158)
22 2i2y_A Fusion protein consists 99.9 1.1E-23 3.8E-28 170.7 9.8 128 154-290 10-149 (150)
23 4fxv_A ELAV-like protein 1; RN 99.9 1.3E-22 4.5E-27 152.2 11.0 81 207-288 18-98 (99)
24 4f25_A Polyadenylate-binding p 99.9 1.6E-22 5.4E-27 156.3 9.3 107 114-224 4-113 (115)
25 4f25_A Polyadenylate-binding p 99.9 3.7E-22 1.3E-26 154.2 10.8 82 208-292 5-86 (115)
26 2lea_A Serine/arginine-rich sp 99.9 1.8E-22 6.1E-27 160.4 7.5 127 158-293 5-131 (135)
27 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.2E-21 4E-26 161.4 10.8 131 162-293 11-156 (165)
28 3s8s_A Histone-lysine N-methyl 99.9 2.7E-21 9.2E-26 147.8 11.7 85 206-291 4-88 (110)
29 2lxi_A RNA-binding protein 10; 99.9 4.5E-22 1.5E-26 146.9 7.0 84 208-292 1-86 (91)
30 1u6f_A Tcubp1, RNA-binding pro 99.9 9.3E-21 3.2E-25 151.5 13.6 89 204-293 38-126 (139)
31 2dnz_A Probable RNA-binding pr 99.8 6.4E-21 2.2E-25 142.0 11.6 87 206-293 3-89 (95)
32 3pgw_S U1-70K; protein-RNA com 99.8 6.2E-22 2.1E-26 186.8 7.5 88 206-294 100-187 (437)
33 2dgo_A Cytotoxic granule-assoc 99.8 2.3E-20 7.9E-25 144.1 14.4 90 203-293 10-99 (115)
34 2lkz_A RNA-binding protein 5; 99.8 1.8E-21 6.1E-26 144.4 7.4 79 209-288 10-94 (95)
35 2cpz_A CUG triplet repeat RNA- 99.8 1.3E-20 4.5E-25 145.5 12.5 88 205-293 22-109 (115)
36 3md1_A Nuclear and cytoplasmic 99.8 1.3E-20 4.5E-25 136.6 11.5 81 209-290 2-82 (83)
37 1x5t_A Splicing factor 3B subu 99.8 8.1E-21 2.8E-25 141.8 10.6 87 206-293 3-90 (96)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.2E-20 4.2E-25 142.4 11.5 88 205-293 9-96 (102)
39 2cq0_A Eukaryotic translation 99.8 1.4E-20 4.9E-25 142.3 11.8 89 204-293 11-99 (103)
40 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-20 3.9E-25 138.2 10.7 82 207-289 5-86 (87)
41 2dgs_A DAZ-associated protein 99.8 1.6E-20 5.3E-25 141.1 11.5 87 205-293 7-93 (99)
42 2do4_A Squamous cell carcinoma 99.8 3.2E-20 1.1E-24 139.6 13.3 86 205-292 14-99 (100)
43 1whw_A Hypothetical protein ri 99.8 1.5E-20 5.1E-25 141.1 11.4 86 206-292 6-91 (99)
44 4fxv_A ELAV-like protein 1; RN 99.8 8.5E-21 2.9E-25 142.3 9.9 82 113-196 17-98 (99)
45 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-20 5.3E-25 153.2 12.3 88 205-293 36-123 (156)
46 2dnm_A SRP46 splicing factor; 99.8 9.9E-21 3.4E-25 143.2 10.0 89 204-293 9-97 (103)
47 2dhg_A TRNA selenocysteine ass 99.8 1.5E-20 5.1E-25 142.5 10.5 87 205-293 6-94 (104)
48 1x5u_A Splicing factor 3B subu 99.8 2.2E-20 7.6E-25 141.8 11.0 89 204-293 11-99 (105)
49 2cpf_A RNA binding motif prote 99.8 2.3E-20 8E-25 139.8 10.9 87 206-293 3-92 (98)
50 3p5t_L Cleavage and polyadenyl 99.8 4.4E-21 1.5E-25 141.4 6.8 83 209-292 2-86 (90)
51 1x4h_A RNA-binding protein 28; 99.8 3.5E-20 1.2E-24 142.2 12.1 89 204-293 11-105 (111)
52 2x1f_A MRNA 3'-END-processing 99.8 2E-20 6.7E-25 139.7 10.4 85 207-292 1-85 (96)
53 2cqc_A Arginine/serine-rich sp 99.8 4.7E-20 1.6E-24 137.3 12.4 85 203-288 10-94 (95)
54 2cqd_A RNA-binding region cont 99.8 4.7E-20 1.6E-24 142.6 12.7 87 204-292 13-99 (116)
55 2d9p_A Polyadenylate-binding p 99.8 4.1E-20 1.4E-24 139.8 11.9 88 203-293 10-97 (103)
56 1x5s_A Cold-inducible RNA-bind 99.8 1.9E-20 6.6E-25 141.3 9.8 88 205-293 9-96 (102)
57 2dng_A Eukaryotic translation 99.8 6.1E-20 2.1E-24 138.8 12.5 86 205-293 12-97 (103)
58 2jrs_A RNA-binding protein 39; 99.8 5.2E-20 1.8E-24 140.4 12.0 86 204-290 22-107 (108)
59 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.9E-20 9.9E-25 135.4 9.9 81 206-287 5-85 (85)
60 2cph_A RNA binding motif prote 99.8 5.2E-20 1.8E-24 140.2 11.6 89 204-293 11-101 (107)
61 2fy1_A RNA-binding motif prote 99.8 4.1E-20 1.4E-24 142.8 11.1 85 206-292 5-89 (116)
62 2kxn_B Transformer-2 protein h 99.8 3E-20 1E-24 146.2 10.4 87 204-291 42-128 (129)
63 2cpe_A RNA-binding protein EWS 99.8 4.7E-20 1.6E-24 141.9 11.3 89 204-293 11-107 (113)
64 1p27_B RNA-binding protein 8A; 99.8 3.4E-20 1.2E-24 141.0 10.3 86 205-291 20-105 (106)
65 1wi8_A EIF-4B, eukaryotic tran 99.8 4.5E-20 1.5E-24 139.8 10.9 86 205-293 12-98 (104)
66 2e5h_A Zinc finger CCHC-type a 99.8 6.2E-20 2.1E-24 136.4 11.4 82 205-287 13-94 (94)
67 2dh8_A DAZ-associated protein 99.8 6.1E-20 2.1E-24 139.4 11.5 88 204-293 12-99 (105)
68 2dnh_A Bruno-like 5, RNA bindi 99.8 8.4E-20 2.9E-24 138.6 12.2 87 205-293 12-101 (105)
69 1oo0_B CG8781-PA, drosophila Y 99.8 3.5E-20 1.2E-24 141.9 10.0 87 205-292 23-109 (110)
70 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-19 4.4E-24 144.8 13.6 87 111-199 38-124 (139)
71 2hvz_A Splicing factor, argini 99.8 2.1E-20 7.3E-25 140.8 8.3 78 209-292 1-78 (101)
72 2dgp_A Bruno-like 4, RNA bindi 99.8 3.6E-20 1.2E-24 140.9 9.6 88 205-293 10-100 (106)
73 2la6_A RNA-binding protein FUS 99.8 8.1E-20 2.8E-24 137.1 11.1 83 204-287 9-99 (99)
74 2div_A TRNA selenocysteine ass 99.8 7E-20 2.4E-24 137.5 10.5 86 206-292 7-97 (99)
75 3ns6_A Eukaryotic translation 99.8 7.4E-21 2.5E-25 143.0 5.1 83 207-290 5-94 (100)
76 4a8x_A RNA-binding protein wit 99.8 6.5E-20 2.2E-24 134.5 9.6 84 207-291 3-87 (88)
77 3ex7_B RNA-binding protein 8A; 99.8 4.1E-20 1.4E-24 145.1 9.1 88 205-293 19-106 (126)
78 2dgw_A Probable RNA-binding pr 99.8 2E-19 6.9E-24 132.8 12.3 84 205-292 7-90 (91)
79 2cqg_A TDP-43, TAR DNA-binding 99.8 3.3E-19 1.1E-23 134.7 13.6 87 204-293 11-97 (103)
80 2do0_A HnRNP M, heterogeneous 99.8 4.6E-19 1.6E-23 136.6 14.6 87 205-293 12-98 (114)
81 2cq3_A RNA-binding protein 9; 99.8 2.7E-19 9.3E-24 135.2 13.1 87 204-293 11-97 (103)
82 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.7E-19 9.1E-24 135.3 13.0 87 204-293 11-97 (103)
83 3ucg_A Polyadenylate-binding p 99.8 1.2E-19 4.3E-24 133.3 10.5 81 208-290 6-86 (89)
84 2cqp_A RNA-binding protein 12; 99.8 1.1E-19 3.7E-24 136.1 10.4 85 205-290 12-96 (98)
85 1x4b_A Heterogeneous nuclear r 99.8 1.2E-19 4.1E-24 140.3 10.6 87 205-293 24-110 (116)
86 1x4a_A Splicing factor, argini 99.8 2.3E-19 8E-24 137.1 12.1 84 205-292 19-102 (109)
87 2khc_A Testis-specific RNP-typ 99.8 7.9E-20 2.7E-24 141.8 9.4 84 203-287 35-118 (118)
88 3n9u_C Cleavage and polyadenyl 99.8 7.8E-20 2.7E-24 148.5 9.7 83 207-290 54-138 (156)
89 2rs2_A Musashi-1, RNA-binding 99.8 1.7E-19 5.9E-24 137.7 10.5 87 204-292 21-107 (109)
90 2fc8_A NCL protein; structure 99.8 4.6E-19 1.6E-23 133.7 12.5 85 204-292 11-95 (102)
91 3s8s_A Histone-lysine N-methyl 99.8 1.7E-19 5.7E-24 137.8 10.1 82 113-196 4-85 (110)
92 2m2b_A RNA-binding protein 10; 99.8 5.9E-20 2E-24 145.2 7.8 86 205-292 20-111 (131)
93 2dgx_A KIAA0430 protein; RRM d 99.8 2.2E-19 7.6E-24 133.9 10.5 83 206-292 7-93 (96)
94 3s7r_A Heterogeneous nuclear r 99.8 3.6E-19 1.2E-23 130.2 11.4 80 205-286 8-87 (87)
95 2ywk_A Putative RNA-binding pr 99.8 2.2E-19 7.5E-24 133.7 10.3 82 205-288 13-94 (95)
96 2dgo_A Cytotoxic granule-assoc 99.8 5.6E-19 1.9E-23 136.3 12.7 92 107-200 7-98 (115)
97 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-19 3.7E-24 136.3 8.3 82 205-293 13-96 (105)
98 1wez_A HnRNP H', FTP-3, hetero 99.8 1.4E-19 4.7E-24 136.4 8.9 84 205-292 12-95 (102)
99 2kt5_A RNA and export factor-b 99.8 7E-19 2.4E-23 137.6 13.3 87 204-292 31-117 (124)
100 2cpi_A CCR4-NOT transcription 99.8 3E-19 1E-23 136.9 10.9 86 206-292 13-104 (111)
101 2wbr_A GW182, gawky, LD47780P; 99.8 1.6E-19 5.4E-24 129.2 8.6 74 207-287 6-79 (89)
102 3ulh_A THO complex subunit 4; 99.8 3.7E-19 1.3E-23 135.5 11.3 81 205-287 26-106 (107)
103 1x5u_A Splicing factor 3B subu 99.8 5.6E-19 1.9E-23 134.0 12.3 87 110-198 10-96 (105)
104 2dgu_A Heterogeneous nuclear r 99.8 6.9E-19 2.4E-23 133.0 12.7 81 205-294 8-88 (103)
105 1p1t_A Cleavage stimulation fa 99.8 1.6E-19 5.6E-24 136.7 9.3 85 207-292 7-91 (104)
106 2dnh_A Bruno-like 5, RNA bindi 99.8 9.9E-19 3.4E-23 132.6 13.4 89 110-199 10-99 (105)
107 2ek1_A RNA-binding protein 12; 99.8 1.3E-19 4.6E-24 134.8 8.3 81 207-288 14-94 (95)
108 2hgn_A Heterogeneous nuclear r 99.8 2.2E-20 7.7E-25 148.2 4.2 125 158-292 2-126 (139)
109 2dgv_A HnRNP M, heterogeneous 99.8 3.7E-19 1.3E-23 131.6 10.4 84 206-292 6-89 (92)
110 1x4c_A Splicing factor, argini 99.8 7.9E-19 2.7E-23 133.8 12.5 80 206-293 13-97 (108)
111 2khc_A Testis-specific RNP-typ 99.8 5.5E-19 1.9E-23 137.0 11.4 84 109-194 34-117 (118)
112 2cq0_A Eukaryotic translation 99.8 4.8E-19 1.6E-23 133.9 10.6 88 109-198 9-96 (103)
113 2cq1_A PTB-like protein L; RRM 99.8 6.8E-19 2.3E-23 131.9 11.3 83 204-293 11-95 (101)
114 2jwn_A Embryonic polyadenylate 99.8 5E-19 1.7E-23 138.5 10.8 84 207-292 35-118 (124)
115 2cq4_A RNA binding motif prote 99.8 1.8E-19 6.2E-24 138.8 8.0 85 206-292 23-107 (114)
116 4f02_A Polyadenylate-binding p 99.8 2.6E-19 8.9E-24 153.6 9.8 84 206-290 13-96 (213)
117 2cpx_A Hypothetical protein FL 99.8 1.9E-19 6.6E-24 138.9 8.0 88 205-293 22-109 (115)
118 2lcw_A RNA-binding protein FUS 99.7 7.8E-21 2.7E-25 147.0 0.0 87 205-292 4-98 (116)
119 1s79_A Lupus LA protein; RRM, 99.8 2.2E-19 7.6E-24 135.4 8.0 80 206-288 9-88 (103)
120 2cqc_A Arginine/serine-rich sp 99.8 5.9E-19 2E-23 131.3 10.1 85 109-195 9-93 (95)
121 2err_A Ataxin-2-binding protei 99.8 4.7E-19 1.6E-23 135.3 9.7 85 203-290 24-108 (109)
122 2hvz_A Splicing factor, argini 99.8 4.4E-19 1.5E-23 133.6 9.5 96 116-218 1-101 (101)
123 2lxi_A RNA-binding protein 10; 99.8 6.1E-20 2.1E-24 135.4 4.6 82 115-198 1-84 (91)
124 3r27_A HnRNP L, heterogeneous 99.8 4.1E-19 1.4E-23 131.7 9.1 80 204-290 17-98 (100)
125 2cph_A RNA binding motif prote 99.8 1.3E-18 4.6E-23 132.3 12.3 88 110-199 10-99 (107)
126 2mss_A Protein (musashi1); RNA 99.8 1.3E-19 4.5E-24 128.7 6.1 75 210-286 1-75 (75)
127 2cpz_A CUG triplet repeat RNA- 99.8 1.1E-18 3.9E-23 134.6 11.9 87 111-199 21-107 (115)
128 2cpy_A RNA-binding protein 12; 99.8 1.2E-19 4.2E-24 139.8 6.4 84 205-291 12-96 (114)
129 2e5h_A Zinc finger CCHC-type a 99.8 6.6E-19 2.3E-23 130.7 10.1 83 111-195 12-94 (94)
130 2dis_A Unnamed protein product 99.8 4.2E-19 1.4E-23 135.7 9.2 86 206-292 6-95 (109)
131 2fc9_A NCL protein; structure 99.8 8.8E-19 3E-23 131.9 10.9 84 204-292 11-94 (101)
132 2dgs_A DAZ-associated protein 99.8 1.9E-18 6.4E-23 129.6 12.6 86 111-199 6-91 (99)
133 1x5s_A Cold-inducible RNA-bind 99.8 9.7E-19 3.3E-23 131.9 11.0 87 111-199 8-94 (102)
134 2dnz_A Probable RNA-binding pr 99.8 1.7E-18 5.7E-23 128.8 12.1 84 113-198 3-86 (95)
135 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.1E-19 3.8E-24 136.6 5.7 83 205-290 16-99 (100)
136 2do4_A Squamous cell carcinoma 99.8 1.6E-18 5.4E-23 130.3 12.0 84 111-197 13-96 (100)
137 2kxn_B Transformer-2 protein h 99.8 1.2E-18 4.1E-23 137.0 11.7 86 110-197 41-126 (129)
138 2d9p_A Polyadenylate-binding p 99.8 1.9E-18 6.5E-23 130.6 12.3 87 109-199 9-95 (103)
139 1x5o_A RNA binding motif, sing 99.8 1.6E-18 5.3E-23 133.6 12.0 84 205-290 22-113 (114)
140 2ad9_A Polypyrimidine tract-bi 99.8 6.5E-19 2.2E-23 135.3 9.7 82 205-293 28-111 (119)
141 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.3E-19 2.1E-23 128.9 9.2 83 113-197 4-86 (87)
142 2div_A TRNA selenocysteine ass 99.8 1.1E-18 3.7E-23 130.9 10.6 87 111-197 5-94 (99)
143 1x4h_A RNA-binding protein 28; 99.8 1.8E-18 6E-23 132.6 12.0 88 110-199 10-103 (111)
144 2dnm_A SRP46 splicing factor; 99.8 1E-18 3.4E-23 132.1 10.4 86 111-198 9-94 (103)
145 1x4e_A RNA binding motif, sing 99.8 9E-20 3.1E-24 132.8 4.4 81 206-287 3-83 (85)
146 1x4d_A Matrin 3; structural ge 99.8 3.4E-19 1.2E-23 133.5 7.5 81 205-292 12-95 (102)
147 2dgp_A Bruno-like 4, RNA bindi 99.8 1.3E-18 4.4E-23 132.2 10.9 89 111-199 9-98 (106)
148 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.4E-19 8.3E-24 127.9 6.4 76 209-286 1-76 (77)
149 2la6_A RNA-binding protein FUS 99.8 2E-18 6.7E-23 129.5 11.6 82 111-194 9-98 (99)
150 2lkz_A RNA-binding protein 5; 99.8 2.2E-19 7.5E-24 133.1 6.1 85 112-196 6-94 (95)
151 1whw_A Hypothetical protein ri 99.8 1.4E-18 4.8E-23 130.3 10.6 86 112-199 5-90 (99)
152 3q2s_C Cleavage and polyadenyl 99.8 8.4E-20 2.9E-24 157.9 4.4 82 207-289 67-150 (229)
153 2m2b_A RNA-binding protein 10; 99.8 1E-18 3.6E-23 138.0 10.3 85 111-198 19-109 (131)
154 2dnq_A RNA-binding protein 4B; 99.8 1.7E-18 5.7E-23 127.5 10.6 80 205-293 5-84 (90)
155 3p5t_L Cleavage and polyadenyl 99.8 4.3E-19 1.5E-23 130.7 7.4 80 116-197 2-83 (90)
156 2db1_A Heterogeneous nuclear r 99.8 5.7E-19 1.9E-23 136.8 8.4 83 205-290 14-99 (118)
157 2jrs_A RNA-binding protein 39; 99.8 2.7E-18 9.3E-23 130.8 12.0 86 110-197 21-106 (108)
158 3md1_A Nuclear and cytoplasmic 99.8 1.3E-18 4.5E-23 125.9 9.8 81 115-197 1-81 (83)
159 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.7E-19 3.3E-23 127.3 9.1 82 112-195 4-85 (85)
160 2hgl_A HNRPF protein, heteroge 99.8 3.9E-19 1.3E-23 140.5 7.4 83 205-290 41-126 (136)
161 3lqv_A PRE-mRNA branch site pr 99.8 7.1E-19 2.4E-23 135.7 8.7 105 112-235 5-109 (115)
162 1wg5_A Heterogeneous nuclear r 99.8 1E-18 3.5E-23 132.2 9.3 85 205-292 12-97 (104)
163 2cpd_A Apobec-1 stimulating pr 99.8 4.6E-18 1.6E-22 127.5 12.7 80 204-292 11-92 (99)
164 1why_A Hypothetical protein ri 99.8 1.4E-18 4.8E-23 129.8 9.8 80 206-292 15-96 (97)
165 2cqd_A RNA-binding region cont 99.8 2.7E-18 9.3E-23 132.6 11.7 87 109-198 11-97 (116)
166 1p27_B RNA-binding protein 8A; 99.8 2.5E-18 8.6E-23 130.6 11.3 85 111-197 19-103 (106)
167 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.8E-18 6.2E-23 138.2 11.0 83 203-286 58-140 (140)
168 1fxl_A Paraneoplastic encephal 99.8 2.9E-18 9.8E-23 140.8 12.5 82 208-290 2-83 (167)
169 1b7f_A Protein (SXL-lethal pro 99.8 2.1E-18 7.2E-23 141.9 11.7 83 207-290 2-84 (168)
170 2ki2_A SS-DNA binding protein 99.8 9.3E-20 3.2E-24 134.3 3.1 82 209-292 2-83 (90)
171 2dng_A Eukaryotic translation 99.8 2.5E-18 8.7E-23 129.9 11.1 86 110-199 10-95 (103)
172 2nlw_A Eukaryotic translation 99.8 8.8E-19 3E-23 132.9 8.5 83 205-290 12-101 (105)
173 2cqb_A Peptidyl-prolyl CIS-tra 99.8 9.2E-19 3.1E-23 132.1 8.5 87 111-199 8-94 (102)
174 1x4g_A Nucleolysin TIAR; struc 99.8 2E-18 6.7E-23 131.9 10.3 82 205-293 22-103 (109)
175 2fy1_A RNA-binding motif prote 99.8 3.7E-18 1.3E-22 131.8 11.9 85 111-198 3-87 (116)
176 2dhg_A TRNA selenocysteine ass 99.8 7E-18 2.4E-22 127.7 13.2 86 111-199 5-92 (104)
177 1fj7_A Nucleolin RBD1, protein 99.8 1.5E-19 5.1E-24 136.2 3.8 85 205-292 14-98 (101)
178 1wex_A Hypothetical protein (r 99.8 2.1E-18 7.2E-23 130.0 10.0 81 205-292 12-94 (104)
179 2dgt_A RNA-binding protein 30; 99.8 5.3E-18 1.8E-22 125.3 12.0 80 205-293 7-86 (92)
180 1wel_A RNA-binding protein 12; 99.8 3.5E-19 1.2E-23 139.4 5.9 84 205-290 22-105 (124)
181 2dh8_A DAZ-associated protein 99.8 2.2E-18 7.6E-23 130.6 10.2 87 110-199 11-97 (105)
182 2dnn_A RNA-binding protein 12; 99.8 9.5E-19 3.2E-23 133.0 8.1 79 207-289 15-93 (109)
183 1l3k_A Heterogeneous nuclear r 99.8 2.8E-18 9.5E-23 144.9 11.7 86 204-291 9-94 (196)
184 1wi8_A EIF-4B, eukaryotic tran 99.8 2.8E-18 9.4E-23 129.9 10.4 86 110-199 10-96 (104)
185 2x1f_A MRNA 3'-END-processing 99.8 2E-18 6.8E-23 128.7 9.4 82 115-198 2-83 (96)
186 1wf1_A RNA-binding protein RAL 99.8 4.4E-18 1.5E-22 130.2 11.4 96 186-292 7-103 (110)
187 2cpe_A RNA-binding protein EWS 99.8 2.8E-18 9.6E-23 131.9 10.3 87 111-199 11-105 (113)
188 2jvr_A Nucleolar protein 3; RN 99.8 1.2E-18 4.2E-23 132.7 8.1 80 207-291 27-107 (111)
189 2e5j_A Methenyltetrahydrofolat 99.8 3.7E-18 1.3E-22 127.5 10.4 81 205-291 16-96 (97)
190 1sjq_A Polypyrimidine tract-bi 99.8 3.6E-18 1.2E-22 128.0 10.2 81 111-199 12-94 (105)
191 1x5t_A Splicing factor 3B subu 99.8 1.5E-18 5.1E-23 129.4 8.1 85 113-199 3-88 (96)
192 2cpf_A RNA binding motif prote 99.8 2.8E-18 9.7E-23 128.3 9.7 85 113-199 3-90 (98)
193 1x4e_A RNA binding motif, sing 99.8 1.5E-18 5E-23 126.3 7.8 81 113-195 3-83 (85)
194 2cq3_A RNA-binding protein 9; 99.8 1E-17 3.5E-22 126.5 12.7 87 109-199 9-95 (103)
195 2cqp_A RNA-binding protein 12; 99.8 1.6E-18 5.3E-23 129.8 8.1 84 111-196 11-94 (98)
196 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.4E-18 2.2E-22 127.7 11.5 86 110-199 10-95 (103)
197 2ywk_A Putative RNA-binding pr 99.8 2.5E-18 8.6E-23 127.9 9.0 82 111-195 12-93 (95)
198 2do0_A HnRNP M, heterogeneous 99.8 1.1E-17 3.8E-22 128.7 12.9 84 111-197 11-94 (114)
199 2a3j_A U1 small nuclear ribonu 99.8 2E-18 6.9E-23 134.9 8.7 83 205-291 26-112 (127)
200 2cpj_A Non-POU domain-containi 99.8 4.2E-18 1.4E-22 127.7 10.1 81 205-292 12-92 (99)
201 2cqh_A IGF-II mRNA-binding pro 99.8 3.8E-18 1.3E-22 126.4 9.7 80 206-293 6-87 (93)
202 3ns6_A Eukaryotic translation 99.8 1.1E-18 3.7E-23 131.1 6.8 82 113-196 4-92 (100)
203 2la4_A Nuclear and cytoplasmic 99.8 2.5E-18 8.5E-23 129.4 8.8 76 207-289 26-101 (101)
204 1oo0_B CG8781-PA, drosophila Y 99.7 3.7E-18 1.3E-22 130.5 9.4 86 111-198 22-107 (110)
205 1wex_A Hypothetical protein (r 99.7 1.3E-17 4.5E-22 125.7 12.2 83 111-199 11-93 (104)
206 1x4f_A Matrin 3; structural ge 99.7 2.2E-18 7.4E-23 131.0 7.9 82 205-293 22-106 (112)
207 2dgv_A HnRNP M, heterogeneous 99.7 1.4E-17 4.7E-22 123.0 12.0 83 112-198 5-87 (92)
208 1iqt_A AUF1, heterogeneous nuc 99.7 6.6E-19 2.3E-23 125.0 4.6 75 210-286 1-75 (75)
209 2jvo_A Nucleolar protein 3; nu 99.7 5.3E-18 1.8E-22 129.1 9.9 81 203-292 26-106 (108)
210 2lmi_A GRSF-1, G-rich sequence 99.7 5.6E-19 1.9E-23 134.4 4.4 83 205-290 8-93 (107)
211 1fjc_A Nucleolin RBD2, protein 99.7 3E-18 1E-22 127.7 8.2 82 205-292 13-94 (96)
212 1s79_A Lupus LA protein; RRM, 99.7 5.9E-18 2E-22 127.5 9.9 81 111-195 7-87 (103)
213 2xnq_A Nuclear polyadenylated 99.7 8.7E-18 3E-22 125.4 10.6 78 204-290 18-96 (97)
214 2cqg_A TDP-43, TAR DNA-binding 99.7 1.2E-17 4.2E-22 126.0 11.5 87 109-199 9-95 (103)
215 3n9u_C Cleavage and polyadenyl 99.7 4E-18 1.4E-22 138.4 9.3 82 113-196 53-136 (156)
216 1x4d_A Matrin 3; structural ge 99.7 4.2E-18 1.5E-22 127.5 8.5 81 111-197 11-92 (102)
217 3s7r_A Heterogeneous nuclear r 99.7 5.1E-18 1.7E-22 124.0 8.6 81 111-194 7-87 (87)
218 3md3_A Nuclear and cytoplasmic 99.7 8.6E-18 2.9E-22 137.8 11.0 80 209-290 1-80 (166)
219 2krb_A Eukaryotic translation 99.7 1.1E-18 3.7E-23 125.9 4.8 73 209-284 2-81 (81)
220 2dnp_A RNA-binding protein 14; 99.7 1.1E-17 3.9E-22 123.0 10.2 79 205-292 6-84 (90)
221 1nu4_A U1A RNA binding domain; 99.7 3.3E-18 1.1E-22 127.7 7.4 83 205-291 5-91 (97)
222 3ucg_A Polyadenylate-binding p 99.7 7.8E-18 2.7E-22 123.6 9.3 81 114-197 5-85 (89)
223 1x5o_A RNA binding motif, sing 99.7 3.2E-17 1.1E-21 126.1 13.2 85 111-196 21-111 (114)
224 2ek1_A RNA-binding protein 12; 99.7 1.8E-18 6.2E-23 128.6 5.8 81 113-195 13-93 (95)
225 2kvi_A Nuclear polyadenylated 99.7 4.1E-18 1.4E-22 127.0 7.7 80 205-293 7-87 (96)
226 2ytc_A PRE-mRNA-splicing facto 99.7 1.3E-17 4.3E-22 121.3 10.1 76 205-287 9-85 (85)
227 3ex7_B RNA-binding protein 8A; 99.7 1.2E-17 4.1E-22 130.9 10.6 86 111-198 18-103 (126)
228 2rs2_A Musashi-1, RNA-binding 99.7 5.4E-18 1.9E-22 129.3 8.3 86 110-198 20-105 (109)
229 3lqv_A PRE-mRNA branch site pr 99.7 5E-18 1.7E-22 130.9 8.2 83 206-292 6-88 (115)
230 2j8a_A Histone-lysine N-methyl 99.7 6.7E-18 2.3E-22 128.8 8.5 80 209-289 3-96 (136)
231 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-17 4.1E-22 125.7 9.9 82 111-197 11-92 (102)
232 2dha_A FLJ20171 protein; RRM d 99.7 2.6E-18 9E-23 133.4 6.4 81 207-290 22-106 (123)
233 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.5E-18 1.9E-22 127.3 7.9 83 111-197 15-98 (100)
234 2cq1_A PTB-like protein L; RRM 99.7 1.5E-17 5.2E-22 124.5 10.2 82 110-199 10-93 (101)
235 1x4a_A Splicing factor, argini 99.7 4.1E-17 1.4E-21 124.5 12.8 84 111-199 18-101 (109)
236 3ulh_A THO complex subunit 4; 99.7 1.2E-17 4.1E-22 127.0 9.7 82 111-195 25-106 (107)
237 1wg5_A Heterogeneous nuclear r 99.7 1.7E-17 5.8E-22 125.5 10.4 82 111-196 11-93 (104)
238 1p1t_A Cleavage stimulation fa 99.7 9.1E-18 3.1E-22 127.0 8.9 83 113-197 6-88 (104)
239 4a8x_A RNA-binding protein wit 99.7 8.2E-18 2.8E-22 123.1 8.3 82 114-197 3-85 (88)
240 2mss_A Protein (musashi1); RNA 99.7 5.4E-18 1.9E-22 120.2 7.1 75 117-194 1-75 (75)
241 1x5p_A Negative elongation fac 99.7 6E-17 2.1E-21 120.8 12.8 80 205-293 12-91 (97)
242 1h2v_Z 20 kDa nuclear CAP bind 99.7 2E-17 6.8E-22 134.7 11.0 85 111-197 35-119 (156)
243 3beg_B Splicing factor, argini 99.7 6.3E-18 2.1E-22 130.3 7.5 78 207-292 15-97 (115)
244 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-17 4.6E-22 133.1 9.7 82 111-194 59-140 (140)
245 2lea_A Serine/arginine-rich sp 99.7 6.5E-18 2.2E-22 133.9 7.8 87 111-199 43-129 (135)
246 2kt5_A RNA and export factor-b 99.7 5.2E-17 1.8E-21 126.9 12.8 84 111-197 31-114 (124)
247 3r27_A HnRNP L, heterogeneous 99.7 1E-17 3.5E-22 124.2 8.2 81 111-197 17-97 (100)
248 1wg1_A KIAA1579 protein, homol 99.7 1.8E-17 6.3E-22 121.3 9.6 76 207-290 4-79 (88)
249 1sjr_A Polypyrimidine tract-bi 99.7 2.8E-17 9.7E-22 132.6 11.5 79 208-291 46-126 (164)
250 2xs2_A Deleted in azoospermia- 99.7 4.6E-18 1.6E-22 128.2 6.3 82 207-292 8-89 (102)
251 2dis_A Unnamed protein product 99.7 2.3E-17 7.8E-22 125.9 10.2 86 112-199 5-94 (109)
252 2hgm_A HNRPF protein, heteroge 99.7 3.3E-18 1.1E-22 133.1 5.4 80 206-289 40-121 (126)
253 2cpi_A CCR4-NOT transcription 99.7 1.1E-17 3.7E-22 128.1 8.2 87 110-198 10-102 (111)
254 3tyt_A Heterogeneous nuclear r 99.7 2.1E-17 7.2E-22 140.6 10.7 78 207-290 3-81 (205)
255 2cpy_A RNA-binding protein 12; 99.7 6.9E-18 2.4E-22 129.9 6.8 82 111-196 11-93 (114)
256 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.4E-18 2.2E-22 120.5 6.2 76 116-194 1-76 (77)
257 2dgx_A KIAA0430 protein; RRM d 99.7 2E-17 6.8E-22 123.2 9.0 81 112-197 6-90 (96)
258 2dgw_A Probable RNA-binding pr 99.7 2.3E-17 7.9E-22 121.6 9.2 82 111-197 6-87 (91)
259 2ad9_A Polypyrimidine tract-bi 99.7 2.6E-17 9E-22 126.4 9.7 82 111-200 27-110 (119)
260 2f3j_A RNA and export factor b 99.7 1.2E-17 4.1E-22 138.6 8.4 84 205-290 85-168 (177)
261 2cq4_A RNA binding motif prote 99.7 6.8E-18 2.3E-22 129.9 6.4 82 112-196 22-103 (114)
262 1why_A Hypothetical protein ri 99.7 9.1E-17 3.1E-21 119.9 12.4 81 111-197 13-93 (97)
263 2err_A Ataxin-2-binding protei 99.7 1.4E-17 4.9E-22 127.0 8.0 85 109-197 23-107 (109)
264 2e5g_A U6 snRNA-specific termi 99.7 3.6E-17 1.2E-21 121.4 9.9 79 207-292 7-85 (94)
265 2ki2_A SS-DNA binding protein 99.7 4.5E-18 1.6E-22 125.1 4.8 79 116-197 2-80 (90)
266 3pgw_A U1-A; protein-RNA compl 99.7 7.9E-17 2.7E-21 144.0 13.8 82 205-290 6-91 (282)
267 3zzy_A Polypyrimidine tract-bi 99.7 5.1E-17 1.8E-21 126.3 10.9 77 209-291 29-108 (130)
268 2fc9_A NCL protein; structure 99.7 2.5E-17 8.6E-22 123.9 8.8 83 111-199 11-93 (101)
269 2kn4_A Immunoglobulin G-bindin 99.7 3.6E-17 1.2E-21 133.4 10.4 86 111-198 66-151 (158)
270 1whx_A Hypothetical protein ri 99.7 1.1E-17 3.9E-22 128.0 6.9 78 207-291 9-86 (111)
271 2cpj_A Non-POU domain-containi 99.7 5.7E-17 2E-21 121.4 10.5 80 110-197 10-89 (99)
272 2a3j_A U1 small nuclear ribonu 99.7 5.5E-17 1.9E-21 126.7 10.6 81 112-197 26-110 (127)
273 3nmr_A Cugbp ELAV-like family 99.7 3.2E-17 1.1E-21 135.6 9.8 83 207-290 2-89 (175)
274 2db1_A Heterogeneous nuclear r 99.7 1.4E-17 4.6E-22 129.0 6.9 81 111-195 13-96 (118)
275 3egn_A RNA-binding protein 40; 99.7 8.5E-18 2.9E-22 134.8 6.0 87 205-292 42-133 (143)
276 2e44_A Insulin-like growth fac 99.7 3.2E-17 1.1E-21 122.1 8.7 80 206-290 13-93 (96)
277 2fc8_A NCL protein; structure 99.7 5.2E-17 1.8E-21 122.3 9.9 85 110-199 10-94 (102)
278 1x4c_A Splicing factor, argini 99.7 8.2E-17 2.8E-21 122.6 11.0 81 112-199 12-95 (108)
279 2krb_A Eukaryotic translation 99.7 3E-17 1E-21 118.2 8.1 74 115-191 1-80 (81)
280 2adc_A Polypyrimidine tract-bi 99.7 8.3E-17 2.8E-21 139.5 12.3 80 205-290 31-111 (229)
281 1x4b_A Heterogeneous nuclear r 99.7 1.3E-17 4.6E-22 128.7 6.5 85 112-199 24-108 (116)
282 2jwn_A Embryonic polyadenylate 99.7 3.7E-17 1.3E-21 127.8 8.9 81 114-197 35-115 (124)
283 2lmi_A GRSF-1, G-rich sequence 99.7 2E-17 6.8E-22 125.8 7.2 81 111-195 7-90 (107)
284 1sjr_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 129.4 11.7 82 113-198 44-125 (164)
285 1wel_A RNA-binding protein 12; 99.7 2E-17 6.9E-22 129.3 7.1 82 111-195 21-102 (124)
286 3q2s_C Cleavage and polyadenyl 99.7 3E-17 1E-21 141.9 8.7 80 114-195 67-148 (229)
287 1qm9_A Polypyrimidine tract-bi 99.7 9.1E-17 3.1E-21 135.9 11.5 77 208-290 3-80 (198)
288 1fj7_A Nucleolin RBD1, protein 99.7 9.7E-18 3.3E-22 126.1 4.9 82 112-197 14-95 (101)
289 2cq2_A Hypothetical protein LO 99.7 3.7E-17 1.3E-21 124.2 8.0 81 205-292 22-109 (114)
290 2diu_A KIAA0430 protein; struc 99.7 5E-17 1.7E-21 117.3 8.3 75 207-292 7-87 (96)
291 2hgl_A HNRPF protein, heteroge 99.7 2.4E-17 8.2E-22 130.3 7.0 81 111-195 40-123 (136)
292 2dnq_A RNA-binding protein 4B; 99.7 1.8E-16 6E-21 116.6 11.1 78 112-199 5-82 (90)
293 2dnn_A RNA-binding protein 12; 99.7 3.1E-17 1.1E-21 124.6 6.8 79 112-195 13-91 (109)
294 2wbr_A GW182, gawky, LD47780P; 99.7 5.1E-17 1.7E-21 116.2 7.5 73 114-194 6-78 (89)
295 1rk8_A CG8781-PA, CG8781-PA pr 99.7 8.5E-17 2.9E-21 132.1 10.0 87 111-199 68-154 (165)
296 2la4_A Nuclear and cytoplasmic 99.7 2.1E-17 7.3E-22 124.3 5.8 76 113-196 25-100 (101)
297 3d2w_A TAR DNA-binding protein 99.7 7.5E-17 2.6E-21 118.2 8.4 78 205-292 8-87 (89)
298 2e5j_A Methenyltetrahydrofolat 99.7 2.3E-16 7.9E-21 117.6 11.3 80 111-197 15-94 (97)
299 2ytc_A PRE-mRNA-splicing facto 99.7 1.3E-16 4.3E-21 116.0 9.6 77 111-195 8-85 (85)
300 2pe8_A Splicing factor 45; RRM 99.7 1.9E-16 6.4E-21 119.5 10.8 82 206-288 6-93 (105)
301 1iqt_A AUF1, heterogeneous nuc 99.7 2.8E-17 9.4E-22 116.5 5.7 74 117-193 1-74 (75)
302 2nlw_A Eukaryotic translation 99.7 9.1E-17 3.1E-21 121.7 8.6 81 111-195 11-98 (105)
303 2jvo_A Nucleolar protein 3; nu 99.7 1E-16 3.5E-21 121.9 8.9 78 110-197 26-103 (108)
304 1x4f_A Matrin 3; structural ge 99.7 5.7E-17 2E-21 123.1 7.3 80 112-197 22-102 (112)
305 1fje_B Nucleolin RBD12, protei 99.7 1.8E-17 6.2E-22 137.4 4.9 84 205-291 10-93 (175)
306 2e5i_A Heterogeneous nuclear r 99.7 2.7E-16 9.3E-21 121.7 11.0 75 210-291 27-104 (124)
307 2cjk_A Nuclear polyadenylated 99.7 2.1E-17 7.1E-22 135.8 4.7 80 207-289 2-81 (167)
308 2cpx_A Hypothetical protein FL 99.7 5.1E-17 1.8E-21 125.2 6.5 86 112-199 22-107 (115)
309 2jvr_A Nucleolar protein 3; RN 99.7 4.7E-17 1.6E-21 123.9 6.1 81 111-197 24-105 (111)
310 1wf0_A TDP-43, TAR DNA-binding 99.7 5.9E-17 2E-21 118.6 6.4 79 207-293 4-82 (88)
311 2hgn_A Heterogeneous nuclear r 99.7 4.4E-17 1.5E-21 129.2 6.1 82 111-197 42-123 (139)
312 2dgu_A Heterogeneous nuclear r 99.7 2.8E-16 9.5E-21 118.6 10.1 78 112-199 8-85 (103)
313 2hgm_A HNRPF protein, heteroge 99.7 1.2E-16 4.2E-21 124.2 8.4 80 111-195 38-119 (126)
314 2e5i_A Heterogeneous nuclear r 99.7 7.1E-16 2.4E-20 119.4 12.4 80 113-198 23-103 (124)
315 2voo_A Lupus LA protein; RNA-b 99.7 3.2E-16 1.1E-20 131.9 11.1 122 166-290 63-188 (193)
316 1x4g_A Nucleolysin TIAR; struc 99.7 3.2E-16 1.1E-20 119.5 9.5 80 112-199 22-101 (109)
317 2dnl_A Cytoplasmic polyadenyla 99.7 2.5E-16 8.5E-21 121.1 9.0 80 206-289 6-88 (114)
318 2lcw_A RNA-binding protein FUS 99.5 7.1E-18 2.4E-22 130.3 0.0 86 112-199 4-97 (116)
319 3zzy_A Polypyrimidine tract-bi 99.7 4E-16 1.4E-20 121.3 9.7 82 112-198 25-107 (130)
320 2e44_A Insulin-like growth fac 99.7 5E-16 1.7E-20 115.5 9.8 80 112-197 12-92 (96)
321 2dha_A FLJ20171 protein; RRM d 99.7 1.2E-16 4E-21 124.0 6.5 78 113-194 21-102 (123)
322 2f3j_A RNA and export factor b 99.7 3.6E-16 1.2E-20 129.6 9.7 83 111-196 84-166 (177)
323 2bz2_A Negative elongation fac 99.7 3.6E-16 1.2E-20 121.3 9.1 79 205-292 36-114 (121)
324 2cpd_A Apobec-1 stimulating pr 99.7 8.4E-16 2.9E-20 115.0 10.8 80 110-199 10-91 (99)
325 2xnq_A Nuclear polyadenylated 99.6 5.5E-16 1.9E-20 115.5 9.5 76 111-196 18-94 (97)
326 2kvi_A Nuclear polyadenylated 99.6 5E-16 1.7E-20 115.5 9.3 78 111-198 6-84 (96)
327 1nu4_A U1A RNA binding domain; 99.6 1.4E-16 4.9E-21 118.7 6.1 81 112-197 5-89 (97)
328 2dnp_A RNA-binding protein 14; 99.6 7.5E-16 2.5E-20 113.2 9.9 78 111-198 5-82 (90)
329 2xs2_A Deleted in azoospermia- 99.6 9.3E-17 3.2E-21 121.0 4.8 81 112-197 6-86 (102)
330 2e5g_A U6 snRNA-specific termi 99.6 1.4E-15 5E-20 112.6 11.2 79 112-198 5-83 (94)
331 1whx_A Hypothetical protein ri 99.6 2.4E-16 8.3E-21 120.5 7.1 76 113-196 8-83 (111)
332 1wf1_A RNA-binding protein RAL 99.6 7.1E-16 2.4E-20 117.8 9.7 77 111-197 23-100 (110)
333 2dgt_A RNA-binding protein 30; 99.6 5.7E-16 1.9E-20 114.3 8.8 78 111-198 6-83 (92)
334 2hzc_A Splicing factor U2AF 65 99.6 3.4E-16 1.2E-20 114.2 7.4 71 207-285 5-86 (87)
335 2i2y_A Fusion protein consists 99.6 8.4E-16 2.9E-20 124.2 10.4 80 111-197 69-148 (150)
336 2j8a_A Histone-lysine N-methyl 99.6 1.9E-16 6.5E-21 120.8 5.5 77 116-194 3-93 (136)
337 3d2w_A TAR DNA-binding protein 99.6 4.4E-16 1.5E-20 114.0 6.6 78 111-197 7-84 (89)
338 2dnl_A Cytoplasmic polyadenyla 99.6 7.4E-16 2.5E-20 118.4 7.9 64 113-177 6-72 (114)
339 1x5p_A Negative elongation fac 99.6 2.6E-15 9E-20 111.8 10.6 80 110-199 10-89 (97)
340 2qfj_A FBP-interacting repress 99.6 2.5E-15 8.6E-20 128.6 11.9 85 113-199 123-207 (216)
341 2cq2_A Hypothetical protein LO 99.6 7.3E-16 2.5E-20 117.1 7.5 78 112-195 22-104 (114)
342 2diu_A KIAA0430 protein; struc 99.6 4.6E-15 1.6E-19 107.1 11.1 74 114-199 7-86 (96)
343 1fjc_A Nucleolin RBD2, protein 99.6 2.9E-16 9.9E-21 116.9 5.0 80 111-197 12-91 (96)
344 3sde_A Paraspeckle component 1 99.6 1.8E-15 6.3E-20 133.6 10.9 77 205-288 19-95 (261)
345 2dit_A HIV TAT specific factor 99.6 5.2E-15 1.8E-19 113.3 11.6 84 204-292 11-105 (112)
346 2cqh_A IGF-II mRNA-binding pro 99.6 1.1E-15 3.7E-20 113.0 7.4 79 112-199 5-85 (93)
347 3beg_B Splicing factor, argini 99.6 1.2E-15 4.1E-20 117.4 7.8 67 113-186 14-80 (115)
348 1wg1_A KIAA1579 protein, homol 99.6 8.6E-16 2.9E-20 112.3 6.3 75 113-196 3-77 (88)
349 3u1l_A PRE-mRNA-splicing facto 99.6 3E-15 1E-19 128.9 10.4 81 205-292 131-232 (240)
350 3egn_A RNA-binding protein 40; 99.6 3.7E-16 1.3E-20 125.2 3.8 85 112-198 42-131 (143)
351 2g4b_A Splicing factor U2AF 65 99.6 3.2E-15 1.1E-19 123.2 9.7 80 113-194 92-171 (172)
352 3v4m_A Splicing factor U2AF 65 99.6 3.1E-15 1.1E-19 112.8 8.4 82 207-289 4-97 (105)
353 3pgw_S U1-70K; protein-RNA com 99.6 3.2E-15 1.1E-19 141.0 10.1 84 111-196 98-181 (437)
354 2yh0_A Splicing factor U2AF 65 99.6 6.2E-15 2.1E-19 124.4 10.5 85 111-197 110-194 (198)
355 3ue2_A Poly(U)-binding-splicin 99.6 6.8E-15 2.3E-19 113.1 9.0 81 207-288 19-108 (118)
356 1wf0_A TDP-43, TAR DNA-binding 99.6 3.4E-15 1.2E-19 109.1 6.0 78 113-199 3-80 (88)
357 2bz2_A Negative elongation fac 99.6 1.2E-14 4.2E-19 112.6 9.2 78 111-198 35-112 (121)
358 1jmt_A Splicing factor U2AF 35 99.6 2E-15 6.9E-20 113.7 4.6 72 213-286 20-103 (104)
359 2hzc_A Splicing factor U2AF 65 99.6 5.7E-15 2E-19 107.6 6.8 71 113-192 4-85 (87)
360 2pe8_A Splicing factor 45; RRM 99.5 2.1E-14 7E-19 108.3 9.5 81 113-195 6-92 (105)
361 2voo_A Lupus LA protein; RNA-b 99.5 3.1E-14 1.1E-18 119.6 8.9 78 114-195 108-185 (193)
362 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.2E-13 4.2E-18 102.7 11.0 69 217-293 26-94 (100)
363 3u1l_A PRE-mRNA-splicing facto 99.5 4.6E-14 1.6E-18 121.4 8.4 80 112-197 131-229 (240)
364 2dit_A HIV TAT specific factor 99.5 2.5E-13 8.6E-18 103.8 10.7 81 111-197 11-102 (112)
365 3s6e_A RNA-binding protein 39; 99.4 6.2E-13 2.1E-17 101.4 8.8 78 207-289 6-93 (114)
366 3tht_A Alkylated DNA repair pr 99.4 3.3E-13 1.1E-17 122.2 7.9 76 205-287 15-97 (345)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.8E-12 1.6E-16 94.1 11.8 76 114-198 9-91 (100)
368 3v4m_A Splicing factor U2AF 65 99.4 5.7E-13 2E-17 100.4 6.8 81 113-195 3-95 (105)
369 1jmt_A Splicing factor U2AF 35 99.4 1.2E-13 4E-18 104.0 3.0 72 120-194 20-103 (104)
370 3ue2_A Poly(U)-binding-splicin 99.4 9.8E-13 3.4E-17 101.0 7.3 80 114-195 19-107 (118)
371 3tht_A Alkylated DNA repair pr 99.3 2.3E-12 8E-17 116.7 7.1 79 111-195 14-97 (345)
372 2dnr_A Synaptojanin-1; RRM dom 99.3 1.5E-11 5.3E-16 87.8 7.5 73 207-289 6-86 (91)
373 1owx_A Lupus LA protein, SS-B, 99.2 6E-11 2E-15 90.5 7.6 77 205-288 15-95 (121)
374 3s6e_A RNA-binding protein 39; 99.2 6.7E-11 2.3E-15 90.1 7.8 77 113-195 5-91 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 9.8E-11 3.4E-15 84.0 4.9 73 206-288 13-94 (95)
376 3dxb_A Thioredoxin N-terminall 99.1 2.9E-10 1E-14 97.6 8.2 69 219-288 140-212 (222)
377 1owx_A Lupus LA protein, SS-B, 99.1 6.1E-10 2.1E-14 84.9 8.9 63 111-179 14-78 (121)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 9E-09 3.1E-13 73.5 5.7 70 115-195 7-84 (91)
379 3dxb_A Thioredoxin N-terminall 98.7 2.8E-08 9.5E-13 85.1 8.0 68 126-195 140-211 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.6 2.2E-07 7.6E-12 67.9 9.5 72 207-285 20-96 (117)
381 1ufw_A Synaptojanin 2; RNP dom 98.5 5.9E-08 2E-12 69.6 4.3 69 114-193 14-91 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.4 8E-07 2.7E-11 65.0 7.4 72 112-191 18-94 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.1 3.7E-05 1.3E-09 55.8 11.1 89 113-221 6-99 (104)
384 1wey_A Calcipressin 1; structu 97.9 3.7E-05 1.3E-09 56.1 6.8 76 208-290 5-85 (104)
385 1whv_A Poly(A)-specific ribonu 97.8 0.00015 5.1E-09 52.0 9.1 58 112-178 13-70 (100)
386 2dhx_A Poly (ADP-ribose) polym 97.8 0.0002 6.9E-09 51.9 9.1 78 207-293 7-88 (104)
387 1uw4_A UPF3X; nonsense mediate 97.8 0.00013 4.3E-09 52.4 8.0 68 209-277 2-71 (91)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00012 4.1E-09 52.5 7.6 68 116-183 2-71 (91)
389 1wey_A Calcipressin 1; structu 97.6 0.0002 7E-09 52.2 6.9 77 113-197 3-84 (104)
390 1whv_A Poly(A)-specific ribonu 97.3 0.0008 2.7E-08 48.2 7.1 56 207-272 15-70 (100)
391 2l08_A Regulator of nonsense t 97.2 0.00071 2.4E-08 48.7 6.0 70 207-277 8-79 (97)
392 1wwh_A Nucleoporin 35, nucleop 97.1 0.0017 5.8E-08 48.7 7.8 74 207-289 23-97 (119)
393 3ctr_A Poly(A)-specific ribonu 97.0 0.00092 3.1E-08 48.0 5.0 54 116-178 7-60 (101)
394 2l08_A Regulator of nonsense t 96.9 0.0008 2.7E-08 48.5 4.0 70 114-183 8-79 (97)
395 3ctr_A Poly(A)-specific ribonu 96.8 0.0012 4.3E-08 47.4 4.0 54 209-272 7-60 (101)
396 1wwh_A Nucleoporin 35, nucleop 96.7 0.0042 1.4E-07 46.5 6.6 64 112-183 21-84 (119)
397 3pq1_A Poly(A) RNA polymerase; 96.4 0.0017 5.9E-08 60.7 3.3 56 114-175 52-107 (464)
398 3p3d_A Nucleoporin 53; structu 96.0 0.0055 1.9E-07 46.5 3.9 77 209-288 8-98 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.4 0.0061 2.1E-07 57.0 2.4 55 208-269 53-107 (464)
400 3p3d_A Nucleoporin 53; structu 93.0 0.054 1.8E-06 41.1 2.6 69 114-184 6-88 (132)
401 3d45_A Poly(A)-specific ribonu 90.5 0.87 3E-05 43.3 8.5 56 115-179 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 85.8 1.4 4.7E-05 41.9 6.6 55 208-272 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 79.5 2.6 8.8E-05 28.4 4.4 61 218-287 11-75 (76)
404 3lpe_A Putative transcription 64.3 33 0.0011 23.9 7.3 45 128-177 21-70 (92)
405 2cu1_A Mitogen-activated prote 61.5 16 0.00053 26.0 4.9 69 214-291 22-90 (103)
406 1xn9_A 30S ribosomal protein S 46.7 66 0.0022 22.9 6.4 48 218-266 28-79 (101)
407 2v94_A RPS24, 30S ribosomal pr 46.1 19 0.00066 26.1 3.5 48 218-266 37-88 (107)
408 2i9x_A Putative septation prot 42.6 32 0.0011 23.8 4.1 26 141-166 5-30 (87)
409 3j21_T 50S ribosomal protein L 41.7 51 0.0017 22.7 5.0 56 211-269 25-81 (86)
410 1ywx_A 30S ribosomal protein S 41.1 67 0.0023 22.9 5.7 48 218-266 28-79 (102)
411 1qb3_A Cyclin-dependent kinase 40.5 6.6 0.00022 29.9 0.3 10 10-19 107-116 (150)
412 3j21_T 50S ribosomal protein L 39.9 66 0.0022 22.2 5.3 56 118-176 25-82 (86)
413 4eyt_A Telomerase associated p 39.5 92 0.0031 21.5 8.3 59 113-179 10-68 (129)
414 2g1d_A 30S ribosomal protein S 39.2 18 0.00061 25.8 2.4 47 218-265 29-79 (98)
415 2xzm_P RPS24E; ribosome, trans 38.1 37 0.0013 26.1 4.1 48 218-266 31-82 (149)
416 2ia9_A Putative septation prot 37.7 41 0.0014 24.0 4.1 26 141-166 5-30 (100)
417 2i9z_A Putative septation prot 36.8 44 0.0015 24.0 4.1 26 141-166 5-30 (105)
418 3u5c_Y RP50, 40S ribosomal pro 35.6 1.3E+02 0.0045 22.6 6.8 48 218-266 33-84 (135)
419 4eyt_A Telomerase associated p 35.2 1.1E+02 0.0037 21.1 8.3 69 208-285 12-87 (129)
420 2i9x_A Putative septation prot 34.6 53 0.0018 22.7 4.1 26 235-260 5-30 (87)
421 4e8u_A Putative uncharacterize 32.7 75 0.0026 25.1 5.2 47 210-260 14-71 (172)
422 2npt_B Mitogen-activated prote 30.1 1.3E+02 0.0045 21.0 5.4 62 215-285 35-96 (100)
423 2ia9_A Putative septation prot 29.7 69 0.0024 22.8 4.1 26 235-260 5-30 (100)
424 4e8u_A Putative uncharacterize 29.7 1.1E+02 0.0037 24.1 5.7 56 117-175 14-81 (172)
425 2i9z_A Putative septation prot 29.1 72 0.0025 22.9 4.2 46 235-287 5-52 (105)
426 3fry_A Probable copper-exporti 28.9 1.1E+02 0.0038 19.3 5.7 55 209-271 7-61 (73)
427 2jrh_A Mitogen-activated prote 26.9 1.1E+02 0.0037 21.2 4.5 66 215-289 19-84 (94)
428 2gu3_A YPMB protein; APC1927, 26.3 95 0.0032 23.4 4.7 52 210-261 64-128 (136)
429 2lfv_A Protein DAMX; cell divi 32.1 14 0.00048 26.7 0.0 64 113-181 23-88 (106)
430 3u5e_X 60S ribosomal protein L 25.5 90 0.0031 23.7 4.4 55 211-268 81-136 (142)
431 1vq8_S 50S ribosomal protein L 25.0 1E+02 0.0035 21.2 4.2 52 118-172 24-77 (85)
432 4a17_R RPL23A, 60S ribosomal p 24.8 92 0.0031 23.9 4.3 55 211-268 89-144 (150)
433 2c60_A Human mitogen-activated 24.1 1.2E+02 0.0041 21.5 4.4 63 215-286 46-108 (111)
434 4a8j_B Elongator complex prote 24.0 1.8E+02 0.0062 24.6 6.3 50 114-163 165-222 (270)
435 3mfb_A Uncharacterized protein 23.0 1.3E+02 0.0044 23.3 4.9 37 220-257 3-42 (157)
436 4bby_A Alkyldihydroxyacetoneph 22.4 92 0.0031 30.4 5.0 58 214-272 349-409 (658)
437 3u5e_X 60S ribosomal protein L 21.7 1.5E+02 0.0052 22.5 5.0 54 118-174 81-136 (142)
438 4a17_R RPL23A, 60S ribosomal p 21.4 1.5E+02 0.0051 22.8 4.9 54 118-174 89-144 (150)
439 2x4i_A CAG38848, uncharacteriz 21.1 1.8E+02 0.0063 21.1 5.1 67 161-243 41-113 (114)
440 2kpo_A Rossmann 2X2 fold prote 21.1 94 0.0032 20.8 3.2 50 220-283 33-83 (110)
441 3iz5_X 60S ribosomal protein L 20.8 89 0.003 24.1 3.5 55 211-268 91-146 (152)
442 3h7h_B Transcription elongatio 20.6 84 0.0029 22.6 3.2 26 249-274 49-74 (106)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6.5e-39 Score=276.28 Aligned_cols=171 Identities=27% Similarity=0.511 Sum_probs=152.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.+|+++|||||+|.+.++|.+|++.+++..+ .++.+++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCcccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999988 56777877
Q ss_pred ccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
++.... ........+|||+|||+++|+++|+++|+ .||.|++|+|++|. +.++|||||+|.+.++|.+||+.||
T Consensus 91 ~~~~~~---~~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 91 WSQRDP---SLRKSGVGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp ECCCCT---HHHHHCTTEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccc---cccccccccceECCcccccHHHHHHHHHh-hcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 765332 12223456899999999999999999996 99999999999985 4579999999999999999999999
Q ss_pred CeEeCCeeEEEEEcCCCCC
Q 018927 273 GVYCSSRPMRIDVATPKKA 291 (349)
Q Consensus 273 g~~~~g~~i~v~~a~~~~~ 291 (349)
|..|+|+.|+|++++++..
T Consensus 165 g~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp TCEETTEECEEEECCCHHH
T ss_pred CCEECCEEEEEEEcCCCcc
Confidence 9999999999999988653
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=9.5e-37 Score=259.08 Aligned_cols=179 Identities=18% Similarity=0.368 Sum_probs=151.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. ++..+ .++.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l 84 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVV 84 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEe
Confidence 3556789999999999999999999999999999999999999999999999999999999999975 88777 66777
Q ss_pred cccccccCCCCCc-cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHH
Q 018927 190 RLNWATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (349)
Q Consensus 190 ~~~~~~~~~~~~~-~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (349)
++.++........ ......++|||+|||+++|+++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|+
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 8777664432222 2234557999999999999999999996 9999999999999989999999999999999999999
Q ss_pred HHhCCeEeCCeeEEEEEcCCCCCCC
Q 018927 269 TEMNGVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 269 ~~l~g~~~~g~~i~v~~a~~~~~~~ 293 (349)
+. ++..|+|+.|+|+++.++....
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HC-SCCEETTEECEEEECC------
T ss_pred Hh-CCcEECCEEEEEEecCChhHhc
Confidence 65 8999999999999999987664
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=249.75 Aligned_cols=166 Identities=31% Similarity=0.605 Sum_probs=152.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
|+|||+|||+++|+++|+++|+.||+|.++++++++ +++++|||||+|.+.++|.+|++.+++..+ .++.+++.|+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcC
Confidence 689999999999999999999999999999999997 588999999999999999999999999999 67888888876
Q ss_pred cCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE
Q 018927 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (349)
Q Consensus 196 ~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (349)
.... ......++|||+|||..+|+++|+++|+ .||.|.++.++.++.++.++|||||+|.+.++|.+|++.|||..
T Consensus 78 ~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QSQQ---SSSDDTFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCC---CCCTTCEEEEEESCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCC---CCCCCCceEEECCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 4433 2344667999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred eCCeeEEEEEcCC
Q 018927 276 CSSRPMRIDVATP 288 (349)
Q Consensus 276 ~~g~~i~v~~a~~ 288 (349)
|+|+.|+|+||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999864
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.5e-36 Score=259.53 Aligned_cols=177 Identities=20% Similarity=0.392 Sum_probs=155.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++|+++|+++|+.||+|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+ .++.|++.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 4568999999999999999999999999999999999998999999999999999999999999999998 56677776
Q ss_pred ccccCCCCCc------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHH
Q 018927 193 WATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 193 ~~~~~~~~~~------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (349)
++........ ......++|||+|||.++|+++|+++|+ .||.|++|+|+.++.+++++|||||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 6553321110 1234567999999999999999999996 99999999999999899999999999999999999
Q ss_pred HHHHhCCeEeCCeeEEEEEcCCCCCC
Q 018927 267 AMTEMNGVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 267 A~~~l~g~~~~g~~i~v~~a~~~~~~ 292 (349)
|++.|||..|+|+.|+|.++.++...
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999997654
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.3e-36 Score=248.11 Aligned_cols=165 Identities=25% Similarity=0.497 Sum_probs=153.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
..++|||+|||+++|+++|+++|+.||+|.++++++++.+|+++|||||+|.+.++|.+|++.+++..+ .++.+++.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 468999999999999999999999999999999999998999999999999999999999999999999 678888888
Q ss_pred cccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018927 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (349)
+..... ....++|||+|||..+++++|+++|+ .||.|.+++++.++.++.++|||||+|.+.++|.+|++.|||
T Consensus 80 ~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPGGE-----SIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCCSS-----TTTTCEEEEESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCcc-----cCCCCCEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 765432 34567999999999999999999996 999999999999988899999999999999999999999999
Q ss_pred eEeCC--eeEEEEEc
Q 018927 274 VYCSS--RPMRIDVA 286 (349)
Q Consensus 274 ~~~~g--~~i~v~~a 286 (349)
..+.| ++|+|+||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99987 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.1e-35 Score=245.69 Aligned_cols=164 Identities=27% Similarity=0.501 Sum_probs=151.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
.++|||+|||+++|+++|+++|+.||+|.++++++++.+|+++|||||+|.+.++|.+|++.|++..+ .++.+++.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 57999999999999999999999999999999999998999999999999999999999999999998 6688888887
Q ss_pred ccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCe
Q 018927 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (349)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~ 274 (349)
.... ......+|||+|||..+++++|+++|+ .||.|.+++++.+..++.++|||||+|.+.++|.+|++.|||.
T Consensus 80 ~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RPSS-----ASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCC-----GGGTTCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCc-----ccCCCCcEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 6432 234567899999999999999999996 9999999999999888999999999999999999999999999
Q ss_pred EeCCee--EEEEEc
Q 018927 275 YCSSRP--MRIDVA 286 (349)
Q Consensus 275 ~~~g~~--i~v~~a 286 (349)
.++|+. |+|+||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 888886
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.4e-36 Score=249.08 Aligned_cols=166 Identities=26% Similarity=0.505 Sum_probs=148.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
+.++|||+|||+++|+++|+++|+.||+|.+|++++++.+|+++|||||+|.+.++|.+|++. +..+ .++.+++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 568999999999999999999999999999999999998999999999999999999999984 4455 556667666
Q ss_pred cccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 018927 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g 273 (349)
+... .......+|||+|||+++|+++|+++|+ .||.|.+++++.++.++.++|||||+|.+.++|.+|++ +++
T Consensus 78 ~~~~-----~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 78 AIPR-----DEQDKTGKIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CCCH-----HHHHHCEEEEEEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccch-----hhccCCCeEEECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 5432 2233456899999999999999999997 99999999999998899999999999999999999996 899
Q ss_pred eEeCCeeEEEEEcCCCC
Q 018927 274 VYCSSRPMRIDVATPKK 290 (349)
Q Consensus 274 ~~~~g~~i~v~~a~~~~ 290 (349)
..|+|+.|+|++|.++.
T Consensus 151 ~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp ECSSSSCEEEEECCCCC
T ss_pred EEeCCeEEEEeecCCCC
Confidence 99999999999999863
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=6.7e-35 Score=242.99 Aligned_cols=168 Identities=23% Similarity=0.436 Sum_probs=149.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCC--CccceEEEEeCCHHHHHHHHHHhCCCCC-CCCCcccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSYSGSLM-PNTDQPFR 190 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g--~~kg~afV~f~~~~~A~~Al~~l~g~~~-~~~~~~i~ 190 (349)
+.++|||+|||+++|+++|+++|+.||+|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+ .+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999776 8999999999999999999999999765 34467777
Q ss_pred ccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018927 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (349)
+.++..... .....++|||+|||.++|+++|+++|+ .||.|.+++++++. ++.++|||||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKN----NAVEDRKLFIGMISKKCTENDIRVMFS-SFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCC----SCGGGSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Ecccccccc----ccCCCCeEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 777654432 233567899999999999999999996 99999999999996 489999999999999999999999
Q ss_pred hCCeEeC---CeeEEEEEcC
Q 018927 271 MNGVYCS---SRPMRIDVAT 287 (349)
Q Consensus 271 l~g~~~~---g~~i~v~~a~ 287 (349)
|||..+. +++|+|+||.
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998776 4999999984
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2e-33 Score=233.58 Aligned_cols=160 Identities=20% Similarity=0.442 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~----G-------~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~ 181 (349)
++.++|||+|||+++|+++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 7777777654 599999999999999999 899999
Q ss_pred CCCCCccccccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCH
Q 018927 182 MPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (349)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~ 261 (349)
+ .++.+++.++.... .....++|||+|||.++|+++|+++|+ .||.|.+++++.++.++.++|||||+|.+.
T Consensus 75 ~--~g~~i~v~~~~~~~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 F--QGQSLKIRRPHDYQ-----PLPGAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp E--TTEECEEECCSSCC-----CCTTTTCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred e--cCceeeecCCcccC-----CCCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 8 66778887765332 223467999999999999999999997 999999999999988999999999999999
Q ss_pred HHHHHHHHHhCCeEeCCeeEEEEEcC
Q 018927 262 NERSRAMTEMNGVYCSSRPMRIDVAT 287 (349)
Q Consensus 262 ~~A~~A~~~l~g~~~~g~~i~v~~a~ 287 (349)
++|.+|++.|||..|+|+.|+|+||.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999984
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=3e-33 Score=237.84 Aligned_cols=170 Identities=20% Similarity=0.399 Sum_probs=146.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~----G-------~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~ 181 (349)
...++|||+|||+++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 356899999999999999999999999 5 56666554 44699999999999999999 899999
Q ss_pred CCCCCccccccccccCCCCC---------------ccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCC
Q 018927 182 MPNTDQPFRLNWATFSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246 (349)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~ 246 (349)
+ .++.|++.++....... .......++|||+|||.++++++|+++|+ .||.|.+|+++.++.
T Consensus 75 ~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 F--QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSA 151 (198)
T ss_dssp E--TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTT
T ss_pred E--cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCC
Confidence 8 66788887765432111 11224568999999999999999999997 999999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCC
Q 018927 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 247 ~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 292 (349)
++.++|||||+|.+.++|.+|++.|||..|+|+.|+|++++++...
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999999999987643
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=3.1e-34 Score=239.24 Aligned_cols=167 Identities=19% Similarity=0.304 Sum_probs=145.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.+.. .++.+..+|+++|||||+|.+.++|.+|+ .|++..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--FGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE--TTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe--CCeEEE
Confidence 4567899999999999999999999999998766 34455558899999999999999999999 5999999 578888
Q ss_pred ccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018927 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (349)
+.|+..... ......++|||+|||.++|+++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|++.
T Consensus 85 v~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 85 LEKPKGRDS---KKVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp EECCCCSSC---STTGGGGEEEEESCCSSCCHHHHHHHCT-TCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred EecCCCccc---cccccCCEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 888775433 2334567999999999999999999996 89987655 46789999999999999999999999
Q ss_pred hCCeEeCCeeEEEEEcCCCC
Q 018927 271 MNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 271 l~g~~~~g~~i~v~~a~~~~ 290 (349)
|||..|+|+.|+|+|+++|.
T Consensus 156 l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HTEEEETTEEEEEEECSSCC
T ss_pred hCCCEECCeEEEEEecCCCC
Confidence 99999999999999998863
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=9.2e-33 Score=248.26 Aligned_cols=173 Identities=16% Similarity=0.303 Sum_probs=158.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
..++|||+|||+++|+++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.|++.|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 457999999999999999999999999999999999999999999999999999999999999999998 678899988
Q ss_pred cccCCCCCccccCCCcceeccCCCCCC-CHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 194 ATFSGSDRRTEACSDLSIFVGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~V~nl~~~~-t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
+...... ......++|||+|||.++ |+++|+++|+ .||.|.+++|+.+. +|.++|||||+|.+.++|.+|++.||
T Consensus 172 a~~~~~~--~~~~~~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQLT--PALLHSRCLCVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGGCC--TTTTSCSEEEEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCC--cccCCccEEEEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 8765432 233466799999999995 9999999996 99999999999986 68999999999999999999999999
Q ss_pred CeEeCCeeEEEEEcCCCCCC
Q 018927 273 GVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 273 g~~~~g~~i~v~~a~~~~~~ 292 (349)
|..|+|+.|+|+|++++..+
T Consensus 248 g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TCEETTEECEEEECCSSSCH
T ss_pred CCccCCeEEEEEEecCCCcc
Confidence 99999999999999987754
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.1e-32 Score=247.82 Aligned_cols=157 Identities=19% Similarity=0.350 Sum_probs=144.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++|+++|+++|+.|| |.++++ ++++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~ 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQ 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEE
Confidence 3568999999999999999999999999 999988 34569999999999999999999999998 56788887
Q ss_pred ccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
|+. ..++|||+|||+++|+++|+++|+ .||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+
T Consensus 91 ~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 91 LQP-----------TDALLCVANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp ECC-----------CSCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ecC-----------CCCEEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 743 346899999999999999999996 99999999999999999999999999999999999999999
Q ss_pred CeEeCCeeEEEEEcCCCC
Q 018927 273 GVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 273 g~~~~g~~i~v~~a~~~~ 290 (349)
|..|+|+.|+|.++.++.
T Consensus 159 ~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp TCEETTEECEEEECCGGG
T ss_pred CCEeCCcEEEEEECCCCC
Confidence 999999999999998754
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.5e-32 Score=246.69 Aligned_cols=166 Identities=23% Similarity=0.410 Sum_probs=144.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 111 TNDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
.....++|||+|||+++|+++|+ ++|+.||.|.+|++++ +|+++|||||+|.+.++|.+|++.|+|..| .+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--CC
Confidence 44678999999999999999977 8999999999999886 678999999999999999999999999998 55
Q ss_pred ccccccccccCCCC------------------------------------------------------------------
Q 018927 187 QPFRLNWATFSGSD------------------------------------------------------------------ 200 (349)
Q Consensus 187 ~~i~~~~~~~~~~~------------------------------------------------------------------ 200 (349)
+.|+|.|+......
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 77888777543210
Q ss_pred ----------------------------------------CccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeE
Q 018927 201 ----------------------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK 240 (349)
Q Consensus 201 ----------------------------------------~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~ 240 (349)
......++++|||+|||.++|+++|+++|+ .||.|++|+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~-~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFN-QFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHH-hcCCeEEEE
Confidence 001222457899999999999999999996 999999999
Q ss_pred EEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC-CeeEEEEEcC
Q 018927 241 VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (349)
Q Consensus 241 i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~ 287 (349)
|+.++ +|||||+|.+.++|.+|++.|||..|+ |+.|+|+|++
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99653 589999999999999999999999999 9999999986
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=5.7e-33 Score=237.03 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=138.9
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 114 ETKTIWIGDLF-HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 114 ~~~~l~V~nLp-~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
+.++|||+||+ +++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.|||..+ .++.|+|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEE
Confidence 56799999999 899999999999999999999998763 59999999999999999999999999 56778888
Q ss_pred ccccCCCCC----------------------c----------cccCCCcceeccCCCCCCCHHHHHHHHhccCCCe--ee
Q 018927 193 WATFSGSDR----------------------R----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV--KG 238 (349)
Q Consensus 193 ~~~~~~~~~----------------------~----------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v--~~ 238 (349)
|++...... + ....++++|||+|||+++|+++|+++|+ .||.| .+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD-ELGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHH-HHTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHH-hcCCcceEE
Confidence 765321100 0 0013456899999999999999999996 99999 88
Q ss_pred eEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCe----eEEEEEc
Q 018927 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR----PMRIDVA 286 (349)
Q Consensus 239 v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~----~i~v~~a 286 (349)
++++.++ +.++|||||+|.+.++|.+||..|||..|.|+ ++.|++|
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9888774 55679999999999999999999999999877 6777775
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=8.9e-33 Score=249.33 Aligned_cols=172 Identities=13% Similarity=0.296 Sum_probs=146.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
..++|||+|||+++|+++|+++|+.|| .|.+|+++.++. |.++|||||+|.+.++|.+|++.|++..+ .++.|++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 578999999999999999999999999 999999999874 88999999999999999999999999999 56888888
Q ss_pred ccccCCCCCcc--ccCCCcceeccCCCCC-CCHHHHHHHHhccCCCeeeeEEEEcCC-CCCcceEEEEEeCCHHHHHHHH
Q 018927 193 WATFSGSDRRT--EACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSN-TGRTKGYGFVRFGDENERSRAM 268 (349)
Q Consensus 193 ~~~~~~~~~~~--~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~~G~v~~v~i~~d~~-~~~~~g~afV~F~~~~~A~~A~ 268 (349)
|+.+....... .....++|||+|||.. +|+++|+++|+ .||.|.+|+|+.+.. |+.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE-GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG-GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh-ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 88765443332 3456789999999999 99999999997 999999999999876 6899999999999999999999
Q ss_pred HHhCCeEeCCeeEEEEEcCCCC
Q 018927 269 TEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 269 ~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
.|||..|+|+.|+|.|+++|.
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCCC
T ss_pred -HhcCCEECCcEEEEEEecCCC
Confidence 999999999999999999873
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.8e-32 Score=246.09 Aligned_cols=186 Identities=10% Similarity=0.187 Sum_probs=149.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......++|||+|||+++|+++|+++|+.||+|.+|+|+++... ++|||||+|.+.++|.+|++ +++..+ .++.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~--~g~~ 109 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVV--GQNE 109 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEE--TTEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEe--CCcE
Confidence 345667899999999999999999999999999999999998733 57999999999999999994 899988 6677
Q ss_pred ccccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHH
Q 018927 189 FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (349)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A 267 (349)
+++.++ ..++|||+|||+.+++++|+++|+ .|| .|.+|+++.++. +.++|||||+|.+.++|.+|
T Consensus 110 i~v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 110 IIVSHL------------TECTLWMTNFPPSYTQRNIRDLLQ-DINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp CEEEEC------------CSCEEEEECCCTTCCHHHHHHHHH-HTTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred EEEEEC------------CCCEEEEECCCCCCCHHHHHHHHH-HhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 887765 356999999999999999999997 999 999999999866 78999999999999999999
Q ss_pred HHHhCCeEeCCeeEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCceEEccCCcce
Q 018927 268 MTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATVSPSFPCFC 338 (349)
Q Consensus 268 ~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~g~g~~g~~~~~~~~~~~~~~~~~~vgn~~~~ 338 (349)
++.|||..|.|+.|+|.++.++...... .......++|||+||...
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~~~~-------------------------~~~~~~~~~l~v~nlp~~ 221 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKSKRT-------------------------DSATLEGREIMIRNLSTE 221 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC----------------------------------CCTTTEEEEEEECTT
T ss_pred HHHhCCCEeCCcEEEEEECCCCcccccc-------------------------cccCCCCceEEEECCCcc
Confidence 9999999999999999999987644211 112345789999999544
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=9e-32 Score=234.19 Aligned_cols=165 Identities=16% Similarity=0.290 Sum_probs=143.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 112 NDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 112 ~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
....++|||+|||+ ++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 35678999999999 99999999999999999999999876 58999999999999999999999999 567788
Q ss_pred ccccccCCCCCc------------------------------cccCCCcceeccCCCCCCCHHHHHHHHhccCC-Ceeee
Q 018927 191 LNWATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGA 239 (349)
Q Consensus 191 ~~~~~~~~~~~~------------------------------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v 239 (349)
+.|+........ ....++++|||+|||.++++++|+++|+ .|| .|.+|
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH-TTSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH-HcCCCeeEE
Confidence 877754311000 0123467899999999999999999997 999 99999
Q ss_pred EEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC-CeeEEEEEcCCC
Q 018927 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (349)
Q Consensus 240 ~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~~~ 289 (349)
+++.+ .+|||||+|.+.++|.+|++.|||..|+ |+.|+|+|++++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 98653 3689999999999999999999999999 999999999875
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=7.6e-32 Score=229.37 Aligned_cols=163 Identities=17% Similarity=0.294 Sum_probs=141.3
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 114 ETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 114 ~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
..++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEE
Confidence 357999999999 99999999999999999999999875 58999999999999999999999999 55777777
Q ss_pred ccccCCCCCc------------------------------cccCCCcceeccCCCCCCCHHHHHHHHhccCC-CeeeeEE
Q 018927 193 WATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKV 241 (349)
Q Consensus 193 ~~~~~~~~~~------------------------------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i 241 (349)
|+........ ....++++|||+|||..+++++|+++|+ .|| .|.+|++
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v~~v~i 153 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFKF 153 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHH-HTTSCCCEEEE
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHH-HcCCCceEEEE
Confidence 7653311000 1123467899999999999999999997 999 9999998
Q ss_pred EEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC-CeeEEEEEcCCC
Q 018927 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (349)
Q Consensus 242 ~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~~~ 289 (349)
+.+ .+|||||+|.+.++|.+|++.|||..|+ |+.|+|+|++++
T Consensus 154 ~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 754 3789999999999999999999999999 999999999875
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=2.4e-31 Score=235.98 Aligned_cols=161 Identities=26% Similarity=0.518 Sum_probs=145.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..+++..+ .++.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL--KSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE--CCceeE
Confidence 4466789999999999999999999999999999999765 49999999999999999999999999 668888
Q ss_pred ccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHH
Q 018927 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~ 270 (349)
+.|+. +..+|||+|||+.+|+++|+++|+ .||.|.+|.|+.| .+|+++|||||+|.+.++|.+|++.
T Consensus 90 v~~a~-----------~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 90 IRFAT-----------HGAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp EEECC-----------CSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eeecc-----------cCCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 88875 346899999999999999999996 9999999999999 5799999999999999999999999
Q ss_pred hC-CeEeC---CeeEEEEEcCCCCCC
Q 018927 271 MN-GVYCS---SRPMRIDVATPKKAS 292 (349)
Q Consensus 271 l~-g~~~~---g~~i~v~~a~~~~~~ 292 (349)
|| +..+. +++|.|+++.+....
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEESS
T ss_pred hcCCeEEecCCCceEEEeeccccCcc
Confidence 95 55555 999999999886543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=7.2e-26 Score=185.39 Aligned_cols=147 Identities=23% Similarity=0.316 Sum_probs=115.8
Q ss_pred EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc-----cccccccc-cCCCCCccccCCCcceeccCCC
Q 018927 144 NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ-----PFRLNWAT-FSGSDRRTEACSDLSIFVGDLA 217 (349)
Q Consensus 144 ~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~-----~i~~~~~~-~~~~~~~~~~~~~~~l~V~nl~ 217 (349)
.++|+.+.. +++|||||+|.+.++|++|++.+++........ ........ .............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 467777753 689999999999999999998877532211111 11111111 1111122334456899999999
Q ss_pred CCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCCC
Q 018927 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~ 293 (349)
+++|+++|+++|+ .||.|.+|+|++|+.++.++|||||+|.+.++|++||+.|||..|+|+.|+|++++++..+.
T Consensus 80 ~~~~~~~l~~~F~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHH-HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 9999999999996 99999999999999899999999999999999999999999999999999999999876553
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=1.1e-23 Score=170.75 Aligned_cols=128 Identities=23% Similarity=0.350 Sum_probs=110.8
Q ss_pred CCccceEEEEeCCHHHHHHHHHHh-CCCCCCCCCccccccccccCC-----------CCCccccCCCcceeccCCCCCCC
Q 018927 154 GQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPFRLNWATFSG-----------SDRRTEACSDLSIFVGDLAPDVT 221 (349)
Q Consensus 154 g~~kg~afV~f~~~~~A~~Al~~l-~g~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~~l~V~nl~~~~t 221 (349)
.+.+|+++|+|.+.++|++|++.+ ++..+++ .++++++.... ..........++|||+|||+++|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 467899999999999999999999 9999965 77777765321 12223345678999999999999
Q ss_pred HHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCC
Q 018927 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 222 ~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
+++|+++|+ .||.|.+|+|+++ ++|||||+|.+.++|.+|++.|||..|+|+.|+|+++++++
T Consensus 87 ~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFG-YYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHH-HHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHH-hhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999997 9999999999876 58999999999999999999999999999999999998875
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=152.18 Aligned_cols=81 Identities=30% Similarity=0.536 Sum_probs=77.9
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
.+++|||+|||+++|+++|+++|+ .||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356899999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 018927 287 TP 288 (349)
Q Consensus 287 ~~ 288 (349)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.6e-22 Score=156.29 Aligned_cols=107 Identities=24% Similarity=0.427 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
...+|||+|||+++|+++|+++|+.||.|.+|+|++|+ +.+||||||+|.+.++|++|++.|++..| .++.|+|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 35689999999999999999999999999999999986 45899999999999999999999999999 667888888
Q ss_pred cccCCCCCc---cccCCCcceeccCCCCCCCHHH
Q 018927 194 ATFSGSDRR---TEACSDLSIFVGDLAPDVTDSI 224 (349)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~l~V~nl~~~~t~~~ 224 (349)
+........ ......++|||+|||+++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 765433221 2233446799999999999874
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=3.7e-22 Score=154.18 Aligned_cols=82 Identities=29% Similarity=0.551 Sum_probs=75.7
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcC
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 287 (349)
..+|||+|||+++|+++|+++|+ .||.|.+|+|++|+ +.+||||||+|.+.++|++||+.||+..|+|+.|+|.+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45899999999999999999997 99999999999985 4589999999999999999999999999999999999998
Q ss_pred CCCCC
Q 018927 288 PKKAS 292 (349)
Q Consensus 288 ~~~~~ 292 (349)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 86644
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.87 E-value=1.8e-22 Score=160.38 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=84.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCee
Q 018927 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (349)
Q Consensus 158 g~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~ 237 (349)
-++|++|.+...+..|+..+++....+... ..+.. ........++|||+|||+++|+++|+++|+ .||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~~~-----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSYGR-----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFE-KYGRVG 75 (135)
T ss_dssp ---------------------------------CCSCC-----SCSSGGGCCCEEEECCCSSCHHHHHHHHHG-GGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC---CCcCC-----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEE
Confidence 367888899999999999888876543321 12222 123344567999999999999999999996 999999
Q ss_pred eeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCCC
Q 018927 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 238 ~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~ 293 (349)
+|+|+.++.+++++|||||+|.+.++|++||+.||+..|+|+.|+|++++++....
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999999899999999999999999999999999999999999999999876654
No 27
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=1.2e-21 Score=161.38 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=80.8
Q ss_pred EEeCCHHHHHHHHHHhCCCCCCCCCccccccccccCC---------------CCCccccCCCcceeccCCCCCCCHHHHH
Q 018927 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG---------------SDRRTEACSDLSIFVGDLAPDVTDSILQ 226 (349)
Q Consensus 162 V~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 226 (349)
.+|++.++|+.|+..+++......++.++..+..... ..........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999887776555555555432110 1111223455789999999999999999
Q ss_pred HHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCCC
Q 018927 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 227 ~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~ 293 (349)
++|+ .||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.|+.++....
T Consensus 91 ~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 9997 99999999999999999999999999999999999999999999999999999999877654
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=147.81 Aligned_cols=85 Identities=12% Similarity=0.210 Sum_probs=80.2
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
.+.++|||+||++++++++|+++|+ +||.|.+|+|++|+.|++++|||||+|++.++|++||+.|||..|+|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 018927 286 ATPKKA 291 (349)
Q Consensus 286 a~~~~~ 291 (349)
+..+..
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 976543
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-22 Score=146.94 Aligned_cols=84 Identities=13% Similarity=0.308 Sum_probs=77.6
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC-CeEeCCeeEEEEE
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN-GVYCSSRPMRIDV 285 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~-g~~~~g~~i~v~~ 285 (349)
+++|||+|||+++|+++|+++|+ .|| .|.+|+|++|+.++.+||||||+|.+.++|++||+.++ +..|+|++|+|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 35899999999999999999997 999 89999999999999999999999999999999998874 5679999999999
Q ss_pred cCCCCCC
Q 018927 286 ATPKKAS 292 (349)
Q Consensus 286 a~~~~~~ 292 (349)
|.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9987654
No 30
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=9.3e-21 Score=151.48 Aligned_cols=89 Identities=21% Similarity=0.463 Sum_probs=83.1
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||.++++++|+++|+ .||.|++|+|++++.+++++|||||+|.+.++|++||+.||+..|+|+.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345668999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++..+.
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999986653
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.4e-21 Score=142.03 Aligned_cols=87 Identities=32% Similarity=0.654 Sum_probs=81.9
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
.++++|||+|||.++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3567999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 018927 286 ATPKKASG 293 (349)
Q Consensus 286 a~~~~~~~ 293 (349)
++++...+
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 99987653
No 32
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=6.2e-22 Score=186.84 Aligned_cols=88 Identities=23% Similarity=0.470 Sum_probs=82.3
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
.+.++|||+|||+.+|+++|+++|+ .||.|+.|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCc
Q 018927 286 ATPKKASGY 294 (349)
Q Consensus 286 a~~~~~~~~ 294 (349)
+.++.....
T Consensus 179 a~~~~~~~~ 187 (437)
T 3pgw_S 179 ERGRTVKGW 187 (437)
T ss_pred eCCCCCCCC
Confidence 998766543
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.3e-20 Score=144.13 Aligned_cols=90 Identities=31% Similarity=0.627 Sum_probs=83.8
Q ss_pred cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 203 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
......++|||+|||+++++++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|++||+.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999996 999999999999988999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCC
Q 018927 283 IDVATPKKASG 293 (349)
Q Consensus 283 v~~a~~~~~~~ 293 (349)
|+|++++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99999987654
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=144.45 Aligned_cols=79 Identities=20% Similarity=0.426 Sum_probs=74.3
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCC--eeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCe----EeCCeeEE
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPS--VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCSSRPMR 282 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~--v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~----~~~g~~i~ 282 (349)
.+|||+|||+++|+++|+++|+ .||. |.+|+|++|+.++++||||||+|.+.++|.+|++.||+. .|+||+|+
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 4899999999999999999996 9995 679999999999999999999999999999999999986 59999999
Q ss_pred EEEcCC
Q 018927 283 IDVATP 288 (349)
Q Consensus 283 v~~a~~ 288 (349)
|+||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1.3e-20 Score=145.49 Aligned_cols=88 Identities=25% Similarity=0.422 Sum_probs=82.7
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567999999999999999999996 99999999999999899999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
|++++..+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 999887654
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.3e-20 Score=136.61 Aligned_cols=81 Identities=37% Similarity=0.705 Sum_probs=78.1
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
.+|||+|||.++++++|+++|+ .||.|.+++++.++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999996 999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 018927 289 KK 290 (349)
Q Consensus 289 ~~ 290 (349)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.1e-21 Score=141.77 Aligned_cols=87 Identities=32% Similarity=0.678 Sum_probs=81.8
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeee-EEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v-~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
.+.++|||+|||+++++++|+++|+ .||.|.+| +|++|+.++.++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3567999999999999999999997 99999999 999998899999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++++..++
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 999987654
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=142.44 Aligned_cols=88 Identities=25% Similarity=0.508 Sum_probs=82.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+.++|||+|||+++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34667999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++++..+.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999987664
No 39
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=142.34 Aligned_cols=89 Identities=27% Similarity=0.464 Sum_probs=83.3
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
+....++|||+|||+++++++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|.+||+.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++..+.
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9999987653
No 40
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=138.22 Aligned_cols=82 Identities=35% Similarity=0.691 Sum_probs=76.8
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
+.++|||+|||.++++++|+++|+ .||.|.+|+++.++.++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 567999999999999999999996 9999999999999989999999999999999999999999999999999999999
Q ss_pred CCC
Q 018927 287 TPK 289 (349)
Q Consensus 287 ~~~ 289 (349)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 41
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=141.06 Aligned_cols=87 Identities=25% Similarity=0.481 Sum_probs=81.4
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||.++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|++||+ ||+..|+|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34667999999999999999999996 99999999999999999999999999999999999997 99999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 999887654
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=139.61 Aligned_cols=86 Identities=20% Similarity=0.417 Sum_probs=80.7
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICK-AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567999999999999999999996 99999999999997 89999999999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
+++++..+
T Consensus 92 ~a~~~~~~ 99 (100)
T 2do4_A 92 ISNSGPSS 99 (100)
T ss_dssp ECCCCSCC
T ss_pred ECCCCCCC
Confidence 99987654
No 43
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=141.14 Aligned_cols=86 Identities=27% Similarity=0.367 Sum_probs=81.7
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
.+.++|||+|||+++|+++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567999999999999999999997 999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 018927 286 ATPKKAS 292 (349)
Q Consensus 286 a~~~~~~ 292 (349)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9998765
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=8.5e-21 Score=142.28 Aligned_cols=82 Identities=27% Similarity=0.465 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999 66889999
Q ss_pred cccc
Q 018927 193 WATF 196 (349)
Q Consensus 193 ~~~~ 196 (349)
|+++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9864
No 45
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.6e-20 Score=153.19 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=82.3
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
|++++....
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 999876543
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9.9e-21 Score=143.21 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=82.8
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++++++|+++|+ .||.|.+|.|+.++.++.++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344568999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9999876554
No 47
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=142.49 Aligned_cols=87 Identities=52% Similarity=0.890 Sum_probs=81.5
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhcc-CCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE-eCCeeEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMR 282 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~-~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~-~~g~~i~ 282 (349)
..+.++|||+|||+++|+++|+++|+ . ||.|.+|+|++|+ ++.++|||||+|.+.++|.+||+.||+.. |+|+.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 44668999999999999999999997 8 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEEcCCCCCCC
Q 018927 283 IDVATPKKASG 293 (349)
Q Consensus 283 v~~a~~~~~~~ 293 (349)
|++++++..+.
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99998877654
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=141.77 Aligned_cols=89 Identities=28% Similarity=0.474 Sum_probs=83.0
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++|+++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999999999999996 9999999999999989999999999999999999999999999999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 1x5u_A 90 NKASAHNKNL 99 (105)
T ss_dssp EETTTTSCCC
T ss_pred EECCCCCcCC
Confidence 9999987653
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=139.82 Aligned_cols=87 Identities=17% Similarity=0.384 Sum_probs=80.6
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCC---CCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~---~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
.+.++|||+|||+++++++|+++|+ .||.|.+|+|+.++. ++.++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3567999999999999999999996 999999999999877 668999999999999999999999999999999999
Q ss_pred EEEcCCCCCCC
Q 018927 283 IDVATPKKASG 293 (349)
Q Consensus 283 v~~a~~~~~~~ 293 (349)
|++++++....
T Consensus 82 V~~a~~~~~~~ 92 (98)
T 2cpf_A 82 VRISERATKPA 92 (98)
T ss_dssp EECSSCSSCCC
T ss_pred EEEccCCCCCC
Confidence 99999877654
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=4.4e-21 Score=141.45 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=72.8
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCC--CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G--~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
.+|||+|||+++|+++|+++|+ .|| .|.+++|+.|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999997 999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018927 287 TPKKAS 292 (349)
Q Consensus 287 ~~~~~~ 292 (349)
.++...
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 987654
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=142.17 Aligned_cols=89 Identities=18% Similarity=0.455 Sum_probs=83.1
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC------CeEeC
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN------GVYCS 277 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~------g~~~~ 277 (349)
.....++|||+|||+++|+++|+++|. .||.|.+|+|++|+.++.++|||||+|.+.++|.+||+.|| +..|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344677999999999999999999997 99999999999999999999999999999999999999999 99999
Q ss_pred CeeEEEEEcCCCCCCC
Q 018927 278 SRPMRIDVATPKKASG 293 (349)
Q Consensus 278 g~~i~v~~a~~~~~~~ 293 (349)
|+.|+|+++.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999999987654
No 52
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=2e-20 Score=139.67 Aligned_cols=85 Identities=26% Similarity=0.457 Sum_probs=80.4
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
++++|||+|||.++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 357899999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018927 287 TPKKAS 292 (349)
Q Consensus 287 ~~~~~~ 292 (349)
+++...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 987643
No 53
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=137.29 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=79.9
Q ss_pred cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 203 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
....+.++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCC
Q 018927 283 IDVATP 288 (349)
Q Consensus 283 v~~a~~ 288 (349)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=142.62 Aligned_cols=87 Identities=30% Similarity=0.482 Sum_probs=80.7
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++|+++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|++||+.|++ .|+|+.|+|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 345678999999999999999999996 999999999999999999999999999999999999999998 899999999
Q ss_pred EEcCCCCCC
Q 018927 284 DVATPKKAS 292 (349)
Q Consensus 284 ~~a~~~~~~ 292 (349)
+++.++...
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999876544
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=139.79 Aligned_cols=88 Identities=31% Similarity=0.617 Sum_probs=81.4
Q ss_pred cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 203 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
......++|||+|||+++|+++|+++|+ .||.|.+|+|+.+ ++.++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFS-PFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTT-TTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3345678999999999999999999996 9999999999998 789999999999999999999999999999999999
Q ss_pred EEEcCCCCCCC
Q 018927 283 IDVATPKKASG 293 (349)
Q Consensus 283 v~~a~~~~~~~ 293 (349)
|++++++..+.
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99999987654
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=141.34 Aligned_cols=88 Identities=33% Similarity=0.573 Sum_probs=82.4
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++++...+
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 999877653
No 57
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=6.1e-20 Score=138.83 Aligned_cols=86 Identities=20% Similarity=0.470 Sum_probs=80.2
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+.++|||+|||+++++++|+++|+ .|| |.+|+|++++.+++++|||||+|.+.++|++|| .||+..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 44568999999999999999999996 897 999999999999999999999999999999999 999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 999876553
No 58
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=140.37 Aligned_cols=86 Identities=29% Similarity=0.671 Sum_probs=81.0
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||..+++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345668999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC
Q 018927 284 DVATPKK 290 (349)
Q Consensus 284 ~~a~~~~ 290 (349)
++++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998874
No 59
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.9e-20 Score=135.44 Aligned_cols=81 Identities=25% Similarity=0.512 Sum_probs=77.4
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
.+.++|||+|||+++++++|+++|+ .||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 018927 286 AT 287 (349)
Q Consensus 286 a~ 287 (349)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=140.22 Aligned_cols=89 Identities=18% Similarity=0.353 Sum_probs=82.7
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEc-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCeEeCCeeE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID-SNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPM 281 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d-~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~i 281 (349)
.....++|||+|||+.+|+++|+++|+ .||.|.+|+|+.+ +.++.++|||||+|.+.++|++||+.| |+..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 345678999999999999999999997 9999999999999 788999999999999999999999999 9999999999
Q ss_pred EEEEcCCCCCCC
Q 018927 282 RIDVATPKKASG 293 (349)
Q Consensus 282 ~v~~a~~~~~~~ 293 (349)
+|++++++....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999999987653
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=142.78 Aligned_cols=85 Identities=20% Similarity=0.440 Sum_probs=79.9
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
...++|||+|||+++|+++|+++|+ .||.|.+|.|+.++ ++.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHH-TSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999999999999999996 99999999999997 899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 018927 286 ATPKKAS 292 (349)
Q Consensus 286 a~~~~~~ 292 (349)
++++...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9987654
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=3e-20 Score=146.23 Aligned_cols=87 Identities=25% Similarity=0.442 Sum_probs=81.8
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
...+.++|||+|||+++++++|+++|+ .||.|.+|+|++|+.+++++|||||+|.+.++|++||+.||+..|+|+.|+|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC
Q 018927 284 DVATPKKA 291 (349)
Q Consensus 284 ~~a~~~~~ 291 (349)
+|+++++.
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99998764
No 63
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=141.92 Aligned_cols=89 Identities=24% Similarity=0.331 Sum_probs=82.6
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCee--------eeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--------GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~--------~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (349)
.....++|||+|||+++|+++|+++|+ .||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.||+..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 345678999999999999999999996 999999 69999999999999999999999999999999999999
Q ss_pred eCCeeEEEEEcCCCCCCC
Q 018927 276 CSSRPMRIDVATPKKASG 293 (349)
Q Consensus 276 ~~g~~i~v~~a~~~~~~~ 293 (349)
|+|+.|+|++++++....
T Consensus 90 ~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp ETTEECEEECSSCCCCST
T ss_pred cCCCEEEEEECCCCCCCC
Confidence 999999999999987653
No 64
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.4e-20 Score=140.99 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=80.9
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
...+++|||+|||.++++++|+++|+ .||.|.+|.|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCC
Q 018927 285 VATPKKA 291 (349)
Q Consensus 285 ~a~~~~~ 291 (349)
+++++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988653
No 65
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=139.83 Aligned_cols=86 Identities=23% Similarity=0.448 Sum_probs=80.3
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCC-CCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
..+.++|||+|||+++++++|+++|+ .|| |.+|+|++++.+ ++++|||||+|.+.++|++|| .||+..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 34568999999999999999999996 999 999999999887 999999999999999999999 99999999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++..+.
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999987654
No 66
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=136.38 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=78.0
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+.++|||+|||+++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44667999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred EcC
Q 018927 285 VAT 287 (349)
Q Consensus 285 ~a~ 287 (349)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 67
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=139.36 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=81.9
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+||+. ++..|+|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 345678999999999999999999997 999999999999999999999999999999999999988 999999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9999887553
No 68
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=8.4e-20 Score=138.56 Aligned_cols=87 Identities=23% Similarity=0.422 Sum_probs=80.9
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCC---eeE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS---RPM 281 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g---~~i 281 (349)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++ ++.++|||||+|.+.++|++||+.||+..+.| +.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34578999999999999999999996 99999999999997 69999999999999999999999999999988 999
Q ss_pred EEEEcCCCCCCC
Q 018927 282 RIDVATPKKASG 293 (349)
Q Consensus 282 ~v~~a~~~~~~~ 293 (349)
+|++++++..+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999999987654
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=3.5e-20 Score=141.90 Aligned_cols=87 Identities=22% Similarity=0.411 Sum_probs=81.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||.++|+++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
+++++..+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99887654
No 70
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=144.77 Aligned_cols=87 Identities=24% Similarity=0.428 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||+|++|+|++++.+|+++|||||+|.+.++|++|++.|++..| .++.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 446778999999999999999999999999999999999998999999999999999999999999999998 567888
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
|.|+.....
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 888875533
No 71
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=140.84 Aligned_cols=78 Identities=21% Similarity=0.454 Sum_probs=73.1
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
++|||+|||+++|+++|+++|+ .||.|.+|+++.+ ++|||||+|.+.++|++|++.||+..|+|+.|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFS-YYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHH-HHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 4799999999999999999996 9999999999876 689999999999999999999999999999999999998
Q ss_pred CCCC
Q 018927 289 KKAS 292 (349)
Q Consensus 289 ~~~~ 292 (349)
+...
T Consensus 75 ~~~~ 78 (101)
T 2hvz_A 75 MPRR 78 (101)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 7644
No 72
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=3.6e-20 Score=140.89 Aligned_cols=88 Identities=18% Similarity=0.419 Sum_probs=81.9
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe---CCeeE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRPM 281 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~---~g~~i 281 (349)
....++|||+|||.++|+++|+++|+ .||.|.+|+|+.|+.+++++|||||+|.+.++|.+|++.||+..+ .|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 44667999999999999999999996 999999999999999999999999999999999999999999987 89999
Q ss_pred EEEEcCCCCCCC
Q 018927 282 RIDVATPKKASG 293 (349)
Q Consensus 282 ~v~~a~~~~~~~ 293 (349)
+|++++++....
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999999877553
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=137.13 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=78.3
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeee--------eEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~--------v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (349)
.....++|||+|||+++++++|+++|+ .||.|.+ |+|++|+.+++++|||||+|.+.++|++|++.|||..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 344667999999999999999999996 9999999 9999999999999999999999999999999999999
Q ss_pred eCCeeEEEEEcC
Q 018927 276 CSSRPMRIDVAT 287 (349)
Q Consensus 276 ~~g~~i~v~~a~ 287 (349)
|+|+.|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999985
No 74
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=137.45 Aligned_cols=86 Identities=24% Similarity=0.433 Sum_probs=80.6
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCee-eeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCee----
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVK-GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP---- 280 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~-~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~---- 280 (349)
...++|||+|||+++++++|+++|+ .||.|. +|+|++|+.++.++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 4567999999999999999999996 999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCC
Q 018927 281 MRIDVATPKKAS 292 (349)
Q Consensus 281 i~v~~a~~~~~~ 292 (349)
|+|.|+++....
T Consensus 86 l~v~~a~~~~~~ 97 (99)
T 2div_A 86 FKLNYATYSGPS 97 (99)
T ss_dssp CCEEETTCCSSS
T ss_pred EEEeecCCCCCC
Confidence 999999886543
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=7.4e-21 Score=143.04 Aligned_cols=83 Identities=27% Similarity=0.327 Sum_probs=78.8
Q ss_pred CCcceeccCCCC------CCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCC-e
Q 018927 207 SDLSIFVGDLAP------DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-R 279 (349)
Q Consensus 207 ~~~~l~V~nl~~------~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-~ 279 (349)
.+++|||+|||+ ++++++|+++|+ .||.|.+|+|++|+.|++++|||||+|.+.++|.+||+.|||..|+| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 456899999999 999999999997 99999999999999999999999999999999999999999999999 9
Q ss_pred eEEEEEcCCCC
Q 018927 280 PMRIDVATPKK 290 (349)
Q Consensus 280 ~i~v~~a~~~~ 290 (349)
.|+|.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999998753
No 76
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=134.46 Aligned_cols=84 Identities=21% Similarity=0.403 Sum_probs=78.2
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCC-cceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR-TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~-~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
..++|||+|||+++|+++|+++|+ .||.|.+++|+.++.++. ++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 356899999999999999999997 999999999999987766 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 018927 286 ATPKKA 291 (349)
Q Consensus 286 a~~~~~ 291 (349)
+.+...
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 988654
No 77
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=4.1e-20 Score=145.11 Aligned_cols=88 Identities=23% Similarity=0.423 Sum_probs=82.4
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|.+|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567999999999999999999996 99999999999999899999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
|+.++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 999877654
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=132.76 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=77.9
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++++++|+++|+ .| .|.+|+|+++ .+++++|||||+|.+.++|.+||+ ||+..|+|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLA-PL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHT-TS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHh-hC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567999999999999999999996 89 9999999999 789999999999999999999998 99999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
+++++..+
T Consensus 83 ~a~~~~~s 90 (91)
T 2dgw_A 83 REKSGPSS 90 (91)
T ss_dssp EESSCCCC
T ss_pred ECCcCCCC
Confidence 99987543
No 79
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-19 Score=134.74 Aligned_cols=87 Identities=25% Similarity=0.348 Sum_probs=80.0
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+||+ ++..|+|+.|+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 345667999999999999999999996 99999999999999999999999999999999999997 578999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
+++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9999987653
No 80
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.6e-19 Score=136.55 Aligned_cols=87 Identities=28% Similarity=0.398 Sum_probs=79.9
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++++++|+++|. .||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFS-MAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567999999999999999999996 99999999999997 58999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++....+.
T Consensus 90 ~a~~~~~~~ 98 (114)
T 2do0_A 90 MDERALPKG 98 (114)
T ss_dssp ECSCCCCCS
T ss_pred EcccCCCCC
Confidence 998765543
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=135.23 Aligned_cols=87 Identities=20% Similarity=0.449 Sum_probs=79.7
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++|+++|+++|+ .||.|.+|+|+.++. .++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345668999999999999999999996 999999999998864 38999999999999999999999999999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9999987654
No 82
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=135.29 Aligned_cols=87 Identities=24% Similarity=0.448 Sum_probs=79.1
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++++++|+++|+ .||.|.+|+|+.++. .++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 345678999999999999999999996 999999999999854 36899999999999999999999999999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqi_A 88 NWATTPSSQK 97 (103)
T ss_dssp EECCCTTCCC
T ss_pred EECCCCcccc
Confidence 9999976553
No 83
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.2e-19 Score=133.26 Aligned_cols=81 Identities=20% Similarity=0.420 Sum_probs=77.4
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcC
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 287 (349)
.++|||+|||+++++++|+++|+ .||.|.+++++.++.+++++|||||+|.+.++|++|+ .||+..|+|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 46899999999999999999996 9999999999999989999999999999999999999 999999999999999998
Q ss_pred CCC
Q 018927 288 PKK 290 (349)
Q Consensus 288 ~~~ 290 (349)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 754
No 84
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=136.12 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=79.4
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++++++|+++|. .||.|.++.++.++.+++++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC
Q 018927 285 VATPKK 290 (349)
Q Consensus 285 ~a~~~~ 290 (349)
+++.+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 988653
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=140.34 Aligned_cols=87 Identities=23% Similarity=0.397 Sum_probs=80.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|. .||.|.+|+|+.++.++.++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 34557999999999999999999996 999999999999999999999999999999999999977 9999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
++.++....
T Consensus 102 ~a~~~~~~~ 110 (116)
T 1x4b_A 102 RAVAREESG 110 (116)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCccCC
Confidence 999987653
No 86
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=137.06 Aligned_cols=84 Identities=20% Similarity=0.430 Sum_probs=76.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|.+|+|..+ +.++|||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFY-KYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44567999999999999999999996 9999999999654 5689999999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
+++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99987655
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=7.9e-20 Score=141.78 Aligned_cols=84 Identities=29% Similarity=0.495 Sum_probs=78.5
Q ss_pred cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 203 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
......++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|++|++.|||..|+|+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q 018927 283 IDVAT 287 (349)
Q Consensus 283 v~~a~ 287 (349)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99985
No 88
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=7.8e-20 Score=148.53 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=78.1
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCC--CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G--~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..++|||+|||+++|+++|+++|+ .|| .|.+|+|+.|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 456999999999999999999996 999 99999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC
Q 018927 285 VATPKK 290 (349)
Q Consensus 285 ~a~~~~ 290 (349)
++.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 998754
No 89
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=1.7e-19 Score=137.73 Aligned_cols=87 Identities=29% Similarity=0.456 Sum_probs=77.4
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++|+++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|.+||+.+ +..|+|+.|+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 345668999999999999999999996 9999999999999999999999999999999999999876 59999999999
Q ss_pred EEcCCCCCC
Q 018927 284 DVATPKKAS 292 (349)
Q Consensus 284 ~~a~~~~~~ 292 (349)
+++.++...
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987654
No 90
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=133.74 Aligned_cols=85 Identities=29% Similarity=0.506 Sum_probs=77.7
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++|+++|+++|+ .| .+|+++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFD-GS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTST-TC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhc-CC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999999999999996 66 47888999889999999999999999999999999999999999999
Q ss_pred EEcCCCCCC
Q 018927 284 DVATPKKAS 292 (349)
Q Consensus 284 ~~a~~~~~~ 292 (349)
++++++..+
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999997765
No 91
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=137.82 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
.+.++|||+||++++||++|+++|++||.|.+|+|+.|+.+|+++|||||+|.+.++|++|++.|||..+ .++.|+|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999 66788888
Q ss_pred cccc
Q 018927 193 WATF 196 (349)
Q Consensus 193 ~~~~ 196 (349)
++..
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 7753
No 92
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-20 Score=145.20 Aligned_cols=86 Identities=16% Similarity=0.359 Sum_probs=80.2
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeee--eEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCe----EeCC
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCSS 278 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~--v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~----~~~g 278 (349)
....++|||+|||+++|+++|+++|+ .||.|.. |+|++|+.++++||||||+|.+. +|.+|++.||+. .|+|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 45667999999999999999999996 9999977 99999999999999999999999 999999999999 9999
Q ss_pred eeEEEEEcCCCCCC
Q 018927 279 RPMRIDVATPKKAS 292 (349)
Q Consensus 279 ~~i~v~~a~~~~~~ 292 (349)
|.|+|++++++...
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999987654
No 93
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=133.88 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCCcceeccCCCCCCCHHHHH----HHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 281 (349)
...++|||+|||+++++++|+ ++|+ .||.|.+|+|++|+.+ +|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345789999999999999999 9997 9999999999998765 8999999999999999999999999999999
Q ss_pred EEEEcCCCCCC
Q 018927 282 RIDVATPKKAS 292 (349)
Q Consensus 282 ~v~~a~~~~~~ 292 (349)
+|++++++...
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999886544
No 94
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=3.6e-19 Score=130.22 Aligned_cols=80 Identities=26% Similarity=0.466 Sum_probs=74.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+|+ .+++..|+|+.|+|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEE
Confidence 34667999999999999999999996 9999999999999999999999999999999999999 558899999999999
Q ss_pred Ec
Q 018927 285 VA 286 (349)
Q Consensus 285 ~a 286 (349)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 95
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=133.66 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=77.0
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+.+++++|+++|+ .||.|.+|+|+.++. +.++|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFL-QAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34567999999999999999999996 999999999999976 8999999999999999999999999999999999999
Q ss_pred EcCC
Q 018927 285 VATP 288 (349)
Q Consensus 285 ~a~~ 288 (349)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9875
No 96
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=5.6e-19 Score=136.30 Aligned_cols=92 Identities=26% Similarity=0.533 Sum_probs=82.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 107 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
.........++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++|++.|++..| .+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 84 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GG 84 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TT
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CC
Confidence 3344567889999999999999999999999999999999999988999999999999999999999999999998 66
Q ss_pred ccccccccccCCCC
Q 018927 187 QPFRLNWATFSGSD 200 (349)
Q Consensus 187 ~~i~~~~~~~~~~~ 200 (349)
+.|+|.|+......
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 88999988765443
No 97
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=136.26 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=73.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC--CeEeCCeeEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPMR 282 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~i~ 282 (349)
..+.++|||+|||+++|+++|+++|+ .||.|++|+|+++ ||||||+|++.++|++|++.|+ +..|+|++|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHH-HHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 34567999999999999999999996 9999999999865 6899999999999999999886 4789999999
Q ss_pred EEEcCCCCCCC
Q 018927 283 IDVATPKKASG 293 (349)
Q Consensus 283 v~~a~~~~~~~ 293 (349)
|.|++++....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99999876553
No 98
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=136.43 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=76.3
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .|| +.+|+|++|+ +++++|||||+|++.++|++|| .+|+..|+||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFS-PLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSC-SCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 34567999999999999999999996 999 4599999997 7999999999999999999999 679999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
++.+....
T Consensus 88 ~~~~~~~~ 95 (102)
T 1wez_A 88 LNSTAGTS 95 (102)
T ss_dssp EECCCCCC
T ss_pred ECCCCCCC
Confidence 99886644
No 99
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=7e-19 Score=137.64 Aligned_cols=87 Identities=28% Similarity=0.415 Sum_probs=80.9
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
....+++|||+|||.++++++|+++|+ .||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345668999999999999999999997 99999999999998 8999999999999999999999999999999999999
Q ss_pred EEcCCCCCC
Q 018927 284 DVATPKKAS 292 (349)
Q Consensus 284 ~~a~~~~~~ 292 (349)
++|.++...
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999886544
No 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=136.88 Aligned_cols=86 Identities=19% Similarity=0.287 Sum_probs=78.4
Q ss_pred CCCcceeccCCCCCCCHHHHH---HHHhccCCCeeeeEEEEcCCCC---CcceEEEEEeCCHHHHHHHHHHhCCeEeCCe
Q 018927 206 CSDLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSNTG---RTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~---~~F~~~~G~v~~v~i~~d~~~~---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 279 (349)
...++|||+|||+++++++|+ ++|+ .||.|.+|+|+.++.++ +++|||||+|.+.++|++||+.||+..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 346799999999999999999 9996 99999999999887654 5569999999999999999999999999999
Q ss_pred eEEEEEcCCCCCC
Q 018927 280 PMRIDVATPKKAS 292 (349)
Q Consensus 280 ~i~v~~a~~~~~~ 292 (349)
.|+|++|+++...
T Consensus 92 ~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 92 TLKASLGTTKYCS 104 (111)
T ss_dssp EEEEESCCCCSCS
T ss_pred EEEEEeccccccc
Confidence 9999999998743
No 101
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.6e-19 Score=129.19 Aligned_cols=74 Identities=8% Similarity=0.205 Sum_probs=69.4
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
.+..|||+||++.+||++|+++|. +||+|.++++.. +||||||+|.+.++|++|++.||+..+.||+|+|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHH-HHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHH-hhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356799999999999999999997 999999999864 6899999999999999999999999999999999999
Q ss_pred C
Q 018927 287 T 287 (349)
Q Consensus 287 ~ 287 (349)
+
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=3.7e-19 Score=135.48 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=77.0
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+.++|||+|||+.+|+++|+++|+ .||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44678999999999999999999997 99999999999998 89999999999999999999999999999999999999
Q ss_pred EcC
Q 018927 285 VAT 287 (349)
Q Consensus 285 ~a~ 287 (349)
+++
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 103
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-19 Score=133.97 Aligned_cols=87 Identities=30% Similarity=0.508 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.|++..| .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 3456789999999999999999999999999999999999998999999999999999999999999999998 56888
Q ss_pred cccccccCC
Q 018927 190 RLNWATFSG 198 (349)
Q Consensus 190 ~~~~~~~~~ 198 (349)
+|.|+....
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 888887553
No 104
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=6.9e-19 Score=132.99 Aligned_cols=81 Identities=30% Similarity=0.493 Sum_probs=73.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+.++|||+|||+++|+++|+++|. .||.|.+|+|+ +|||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFS-QFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHH-HHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567999999999999999999996 99999999887 4599999999999999999999999999999999
Q ss_pred EcCCCCCCCc
Q 018927 285 VATPKKASGY 294 (349)
Q Consensus 285 ~a~~~~~~~~ 294 (349)
+++++.....
T Consensus 79 ~a~~~~~~~~ 88 (103)
T 2dgu_A 79 FAKPPDQKRK 88 (103)
T ss_dssp ECCCCCCCCC
T ss_pred EcCCCcccch
Confidence 9999876643
No 105
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=136.68 Aligned_cols=85 Identities=34% Similarity=0.588 Sum_probs=80.7
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+|||..+++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 457999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018927 287 TPKKAS 292 (349)
Q Consensus 287 ~~~~~~ 292 (349)
+++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 987654
No 106
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=9.9e-19 Score=132.59 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC-CCcc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQP 188 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~-~~~~ 188 (349)
......++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|++..+.+ ..+.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344678999999999999999999999999999999999998 89999999999999999999999999998843 2288
Q ss_pred ccccccccCCC
Q 018927 189 FRLNWATFSGS 199 (349)
Q Consensus 189 i~~~~~~~~~~ 199 (349)
|+|.|+.....
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99998876543
No 107
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=1.3e-19 Score=134.80 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=76.1
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+|||+++|+++|+++|. .||.|.++.++.++.+++++|||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 457999999999999999999996 9999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 018927 287 TP 288 (349)
Q Consensus 287 ~~ 288 (349)
+.
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 108
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=2.2e-20 Score=148.17 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=75.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCCee
Q 018927 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (349)
Q Consensus 158 g~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~ 237 (349)
|+||.+|.-++.+..++..+.... .+... .-. .............++|||+|||+++|+++|+++|+ .|| |+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-gg~~~--g~~---~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~-~~G-i~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT-GGQQM--GRG---SGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS-PLN-PV 73 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC-SCC-CS
T ss_pred CcccccccCccccchhcccchhcc-CCCCC--CCC---CCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcC-Ce
Confidence 678888888887777765544321 11110 000 00011122334567999999999999999999996 999 77
Q ss_pred eeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCC
Q 018927 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 238 ~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 292 (349)
+|+|++|+. ++++|||||+|++.++|++|| .+|+..|+||.|+|.++.++...
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 999999976 999999999999999999999 89999999999999999887654
No 109
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=3.7e-19 Score=131.60 Aligned_cols=84 Identities=27% Similarity=0.438 Sum_probs=78.2
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
...++|||+|||.++++++|+++|+ .||.|.+|+|+++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFN-ECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHH-TTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567999999999999999999997 9999999999984 688999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 018927 286 ATPKKAS 292 (349)
Q Consensus 286 a~~~~~~ 292 (349)
++++...
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9987654
No 110
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.9e-19 Score=133.85 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=74.4
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCC-----ee
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-----RP 280 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~~ 280 (349)
...++|||+|||+++|+++|+++|+ .||.|.+|+|+.+ |||||+|.+.++|++||+.||+..|+| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 4567999999999999999999996 9999999999876 799999999999999999999999999 99
Q ss_pred EEEEEcCCCCCCC
Q 018927 281 MRIDVATPKKASG 293 (349)
Q Consensus 281 i~v~~a~~~~~~~ 293 (349)
|+|++++++..+.
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999977654
No 111
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=5.5e-19 Score=136.99 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=77.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......++|||+|||+++|+++|+++|+.||+|.+|++++++.+|+++|||||+|.+.++|++|++.|++..+ .++.
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 111 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKR 111 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEE
Confidence 34556778999999999999999999999999999999999988999999999999999999999999999998 5677
Q ss_pred cccccc
Q 018927 189 FRLNWA 194 (349)
Q Consensus 189 i~~~~~ 194 (349)
|+|.|+
T Consensus 112 l~V~~a 117 (118)
T 2khc_A 112 LKVQLK 117 (118)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 888775
No 112
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=133.87 Aligned_cols=88 Identities=28% Similarity=0.424 Sum_probs=80.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......++|||+|||+++|+++|+++|+.||+|.+|+|+.++.+++++|||||+|.+.++|.+|++.|++..| .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 86 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLI 86 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcE
Confidence 34567789999999999999999999999999999999999998999999999999999999999999999998 6788
Q ss_pred ccccccccCC
Q 018927 189 FRLNWATFSG 198 (349)
Q Consensus 189 i~~~~~~~~~ 198 (349)
|+|.|+....
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 8998887654
No 113
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.8e-19 Score=131.95 Aligned_cols=83 Identities=12% Similarity=0.162 Sum_probs=74.1
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHh--CCeEeCCeeE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM--NGVYCSSRPM 281 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l--~g~~~~g~~i 281 (349)
...++++|||+|||+++|+++|+++|+ .||.|.+|.|+++ ||||||+|++.++|.+|++.| ++..|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGL-PFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 345678999999999999999999996 9999999988854 789999999999999999977 4678999999
Q ss_pred EEEEcCCCCCCC
Q 018927 282 RIDVATPKKASG 293 (349)
Q Consensus 282 ~v~~a~~~~~~~ 293 (349)
+|.|++.+....
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999999877654
No 114
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=5e-19 Score=138.46 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=79.3
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+|||+++|+++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|| .|||..|+|+.|+|+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 457999999999999999999997 9999999999999999999999999999999999999 89999999999999999
Q ss_pred CCCCCC
Q 018927 287 TPKKAS 292 (349)
Q Consensus 287 ~~~~~~ 292 (349)
++....
T Consensus 113 ~~~~~~ 118 (124)
T 2jwn_A 113 RTNMPG 118 (124)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 876554
No 115
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=138.84 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=79.6
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
...++|||+|||+++++++|+++|+ .||.|.+|+|+.|+.++.++|||||+|.+.++|++|| .||+..|+|+.|+|++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3457999999999999999999996 9999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCCC
Q 018927 286 ATPKKAS 292 (349)
Q Consensus 286 a~~~~~~ 292 (349)
++++..+
T Consensus 101 a~~~~~~ 107 (114)
T 2cq4_A 101 SQAEKNR 107 (114)
T ss_dssp HHHHHHH
T ss_pred cCCCccC
Confidence 9886543
No 116
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=2.6e-19 Score=153.58 Aligned_cols=84 Identities=33% Similarity=0.493 Sum_probs=78.5
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
.+.++|||+|||+++|+++|+++|+ .||.|++|+|++|+.+++++|||||+|.+.++|.+||+.+|+..+.|+.|+|.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3567999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 018927 286 ATPKK 290 (349)
Q Consensus 286 a~~~~ 290 (349)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87654
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=138.89 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=77.4
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+.++|||+|||+++|+++|+++|+ .||.|.++.+..+..+++++|||||+|.+.++|.+||+.||+..|+|+.|+|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34568999999999999999999997 99999655444444478999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++++..+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999987654
No 118
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=7.8e-21 Score=147.03 Aligned_cols=87 Identities=25% Similarity=0.370 Sum_probs=81.2
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeee--------eEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~--------v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~ 276 (349)
..+.++|||+|||+++++++|+++|+ .||.|.+ |+|+.++.+++++|||||+|.+.++|.+|++.||+..|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 34567999999999999999999996 9999999 99999988999999999999999999999999999999
Q ss_pred CCeeEEEEEcCCCCCC
Q 018927 277 SSRPMRIDVATPKKAS 292 (349)
Q Consensus 277 ~g~~i~v~~a~~~~~~ 292 (349)
+|+.|+|++++++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999987655
No 119
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=135.36 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=75.3
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
...++|||+|||+++|+++|+++|+ .||.|.+|+|++|+. +.++|||||+|.+.++|.+||+ +++..|+|+.|+|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3457999999999999999999997 999999999999987 9999999999999999999997 999999999999999
Q ss_pred cCC
Q 018927 286 ATP 288 (349)
Q Consensus 286 a~~ 288 (349)
+.+
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 866
No 120
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=131.28 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 86 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRR 86 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEE
Confidence 34566788999999999999999999999999999999999998999999999999999999999999999999 6788
Q ss_pred ccccccc
Q 018927 189 FRLNWAT 195 (349)
Q Consensus 189 i~~~~~~ 195 (349)
|++.|++
T Consensus 87 l~v~~a~ 93 (95)
T 2cqc_A 87 IRVSGPS 93 (95)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 8888865
No 121
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=135.32 Aligned_cols=85 Identities=20% Similarity=0.447 Sum_probs=77.7
Q ss_pred cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 203 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
......++|||+|||.++|+++|+++|+ .||.|.+|+|++++ +.++|||||+|.+.++|++|++.|||..|+|+.|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445678999999999999999999996 99999999999885 35899999999999999999999999999999999
Q ss_pred EEEcCCCC
Q 018927 283 IDVATPKK 290 (349)
Q Consensus 283 v~~a~~~~ 290 (349)
|++++++.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998863
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=133.56 Aligned_cols=96 Identities=24% Similarity=0.332 Sum_probs=80.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
++|||+|||+++|+++|+++|+.||+|.+|+++.+ ++|||||+|.+.++|++|++.|++..+ .++.|++.|+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 58999999999999999999999999999999987 569999999999999999999999998 56778888887
Q ss_pred cCCCCCccc-----cCCCcceeccCCCC
Q 018927 196 FSGSDRRTE-----ACSDLSIFVGDLAP 218 (349)
Q Consensus 196 ~~~~~~~~~-----~~~~~~l~V~nl~~ 218 (349)
......... .....+|||+||+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCCC
Confidence 654332211 22356899999973
No 123
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=6.1e-20 Score=135.43 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC-CCCCCCCCcccccc
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS-GSLMPNTDQPFRLN 192 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~-g~~~~~~~~~i~~~ 192 (349)
+++|||+|||+++||++|+++|+.|| +|.+|+|++|+.+|.++|||||+|.+.++|.+|++.++ +..+ .++.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 46899999999999999999999999 89999999999999999999999999999999998774 4456 67889999
Q ss_pred ccccCC
Q 018927 193 WATFSG 198 (349)
Q Consensus 193 ~~~~~~ 198 (349)
|+.++.
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 987654
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=131.75 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=72.1
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE--eCCeeE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPM 281 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~i 281 (349)
...++++|||+|||+++|+++|+++|+ .||.|.+|++++ .||||||+|++.++|.+|++.|++.. |.||+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~-~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQ-EFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 345678999999999999999999996 999999999984 46899999999999999999999865 789999
Q ss_pred EEEEcCCCC
Q 018927 282 RIDVATPKK 290 (349)
Q Consensus 282 ~v~~a~~~~ 290 (349)
+|.|++.+.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998764
No 125
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=132.33 Aligned_cols=88 Identities=20% Similarity=0.416 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHh-CCCCCCCCCc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN-KQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQ 187 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~-~~~g~~kg~afV~f~~~~~A~~Al~~l-~g~~~~~~~~ 187 (349)
......++|||+|||+++|+++|+++|+.||.|.+|+|+++ +.+++++|||||+|.+.++|.+|++.| ++..| .++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~ 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGR 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCC
Confidence 35567899999999999999999999999999999999999 789999999999999999999999999 99999 567
Q ss_pred cccccccccCCC
Q 018927 188 PFRLNWATFSGS 199 (349)
Q Consensus 188 ~i~~~~~~~~~~ 199 (349)
.|+|.|+.....
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 889988876543
No 126
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=1.3e-19 Score=128.69 Aligned_cols=75 Identities=25% Similarity=0.435 Sum_probs=71.9
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
+|||+|||+++++++|+++|+ .||.|.+|+++.++.+++++|||||+|.+.++|++|++ ||+..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999997 99999999999999899999999999999999999996 9999999999999986
No 127
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=1.1e-18 Score=134.57 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|++..| .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999999999998 678899
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
|.|+.....
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 998876543
No 128
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-19 Score=139.76 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=77.7
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCe-eeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSV-KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v-~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
....++|||+|||+++|+++|+++|+ .||.| .+|+|++|+ +++++|||||+|.+.++|++||+. |+..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLE-GIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTT-TSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHH-hCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567999999999999999999996 99999 899999998 899999999999999999999966 999999999999
Q ss_pred EEcCCCCC
Q 018927 284 DVATPKKA 291 (349)
Q Consensus 284 ~~a~~~~~ 291 (349)
.++.++..
T Consensus 89 ~~a~~~~~ 96 (114)
T 2cpy_A 89 HVVTLEDM 96 (114)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99988653
No 129
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=130.74 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++++++|+++|+.||+|.+|+++.++.+++++|||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 445778999999999999999999999999999999999998999999999999999999999999999998 578888
Q ss_pred ccccc
Q 018927 191 LNWAT 195 (349)
Q Consensus 191 ~~~~~ 195 (349)
+.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 87763
No 130
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-19 Score=135.65 Aligned_cols=86 Identities=15% Similarity=0.279 Sum_probs=79.4
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCC-eeeeEEE-EcCCCCCcceEEEEEeCCHHHHHHHHHHhC--CeEeCCeeE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPM 281 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~-v~~v~i~-~d~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~i 281 (349)
.+.++|||+|||+++|+++|+++|. .||. |.+|.|+ .++.++.++|||||+|.+.++|.+|++.|| +..|+|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 3567999999999999999999997 9998 9999998 888889999999999999999999999996 589999999
Q ss_pred EEEEcCCCCCC
Q 018927 282 RIDVATPKKAS 292 (349)
Q Consensus 282 ~v~~a~~~~~~ 292 (349)
+|+|++++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999987654
No 131
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.8e-19 Score=131.92 Aligned_cols=84 Identities=24% Similarity=0.447 Sum_probs=75.5
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++|+++|+++|+ .||.| +++.+ .+++++|||||+|.+.++|++||+.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFE-KATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCS-SCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345678999999999999999999996 89977 56666 67899999999999999999999999999999999999
Q ss_pred EEcCCCCCC
Q 018927 284 DVATPKKAS 292 (349)
Q Consensus 284 ~~a~~~~~~ 292 (349)
++++++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999997654
No 132
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=129.62 Aligned_cols=86 Identities=20% Similarity=0.362 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++ +++..+ .++.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEE
Confidence 34577899999999999999999999999999999999999899999999999999999999998 999998 567888
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
|.|+.....
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 888875543
No 133
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.7e-19 Score=131.93 Aligned_cols=87 Identities=25% Similarity=0.455 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||+|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 445778999999999999999999999999999999999998999999999999999999999999999999 568888
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
|.|+.....
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 888876543
No 134
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=128.85 Aligned_cols=84 Identities=25% Similarity=0.538 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.|++..+ .++.|+|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4678999999999999999999999999999999999998999999999999999999999999999999 56888888
Q ss_pred ccccCC
Q 018927 193 WATFSG 198 (349)
Q Consensus 193 ~~~~~~ 198 (349)
|+....
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 887553
No 135
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=136.58 Aligned_cols=83 Identities=27% Similarity=0.482 Sum_probs=75.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcC-CCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~-~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
....++|||+|||+++++++|+++|+ .|| |.+|+|++++ .+++++|||||+|.+.++|.+|| .|||..|+|+.|+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 44668999999999999999999996 999 9999999998 58999999999999999999999 99999999999999
Q ss_pred EEcCCCC
Q 018927 284 DVATPKK 290 (349)
Q Consensus 284 ~~a~~~~ 290 (349)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998864
No 136
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=130.28 Aligned_cols=84 Identities=17% Similarity=0.342 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44567899999999999999999999999999999999998 999999999999999999999999999998 568888
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+...
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8888754
No 137
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=1.2e-18 Score=137.03 Aligned_cols=86 Identities=20% Similarity=0.329 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|++|++.|++..| .++.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3456788999999999999999999999999999999999998999999999999999999999999999999 56788
Q ss_pred cccccccC
Q 018927 190 RLNWATFS 197 (349)
Q Consensus 190 ~~~~~~~~ 197 (349)
+|.|+..+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 88887654
No 138
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=130.56 Aligned_cols=87 Identities=25% Similarity=0.450 Sum_probs=78.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......++|||+|||+++|+++|+++|+.||.|.+|+|+.+ ++.++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 84 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKP 84 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSB
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcE
Confidence 345568899999999999999999999999999999999998 899999999999999999999999999999 6788
Q ss_pred ccccccccCCC
Q 018927 189 FRLNWATFSGS 199 (349)
Q Consensus 189 i~~~~~~~~~~ 199 (349)
|+|.|+.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 LYVALAQRKEE 95 (103)
T ss_dssp CEEEECSSCCC
T ss_pred EEEEEeccccc
Confidence 88888876543
No 139
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=133.56 Aligned_cols=84 Identities=17% Similarity=0.446 Sum_probs=77.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe--------
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-------- 276 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~-------- 276 (349)
....++|||+|||+++|+++|+++|+ .||.|.+|+|++++ ++.++|||||+|.+.++|++|++.|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLK-PFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567999999999999999999996 99999999999998 899999999999999999999999999999
Q ss_pred CCeeEEEEEcCCCC
Q 018927 277 SSRPMRIDVATPKK 290 (349)
Q Consensus 277 ~g~~i~v~~a~~~~ 290 (349)
.+++|+|+|++++.
T Consensus 100 ~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 100 PTEPLLCKFSGPSS 113 (114)
T ss_dssp CSSCBEEEECCCSC
T ss_pred CCCceeEEccCCCC
Confidence 58889999999753
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=135.34 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=74.1
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC--eEeCCeeEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMR 282 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~i~ 282 (349)
..++++|||+|||+++|+++|+++|+ .||.|++|+|+++ ||||||+|++.++|.+|++.|++ ..|+|++|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHT-TTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 44667999999999999999999996 9999999999865 68999999999999999999884 689999999
Q ss_pred EEEcCCCCCCC
Q 018927 283 IDVATPKKASG 293 (349)
Q Consensus 283 v~~a~~~~~~~ 293 (349)
|.|++++....
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99999877654
No 141
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=128.88 Aligned_cols=83 Identities=29% Similarity=0.601 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.|++..+ .++.|++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4678999999999999999999999999999999999988999999999999999999999999999998 66888888
Q ss_pred ccccC
Q 018927 193 WATFS 197 (349)
Q Consensus 193 ~~~~~ 197 (349)
|+..+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 87643
No 142
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=130.88 Aligned_cols=87 Identities=43% Similarity=0.794 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE-EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc-
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP- 188 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~-~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~- 188 (349)
.....++|||+|||+++++++|+++|+.||+|. +|++++++.+++++|||||+|.+.++|++|++.|++..+.+....
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999999999 999999999999999999999999999999999999999554422
Q ss_pred -ccccccccC
Q 018927 189 -FRLNWATFS 197 (349)
Q Consensus 189 -i~~~~~~~~ 197 (349)
|++.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 888888754
No 143
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=132.59 Aligned_cols=88 Identities=25% Similarity=0.370 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC------CCCCC
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS------GSLMP 183 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~------g~~~~ 183 (349)
......++|||+|||+++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|+ +..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~- 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL- 88 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES-
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE-
Confidence 345678899999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred CCCccccccccccCCC
Q 018927 184 NTDQPFRLNWATFSGS 199 (349)
Q Consensus 184 ~~~~~i~~~~~~~~~~ 199 (349)
.++.|+|.|+.....
T Consensus 89 -~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 -DGRQLKVDLAVTRDE 103 (111)
T ss_dssp -SSCEEEEECCCCCCC
T ss_pred -cCEEEEEEECCCCcc
Confidence 678888888876543
No 144
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=132.09 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 456779999999999999999999999999999999999998999999999999999999999999999999 568888
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
|.|+....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 88887543
No 145
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9e-20 Score=132.83 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=76.0
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
.+.++|||+|||+++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3567999999999999999999996 999999999999999999999999999999999999999999999999998877
Q ss_pred cC
Q 018927 286 AT 287 (349)
Q Consensus 286 a~ 287 (349)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 146
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-19 Score=133.50 Aligned_cols=81 Identities=9% Similarity=0.150 Sum_probs=72.4
Q ss_pred cCCCcceeccCCCC-CCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC--eEeCCeeE
Q 018927 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPM 281 (349)
Q Consensus 205 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~i 281 (349)
..++++|||+|||+ ++|+++|+++|+ .||.|.+|+|+++ +|||||+|++.++|.+|++.||+ ..|+||+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVE-PFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTG-GGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 34678999999999 999999999996 9999999999865 47999999999999999999986 45999999
Q ss_pred EEEEcCCCCCC
Q 018927 282 RIDVATPKKAS 292 (349)
Q Consensus 282 ~v~~a~~~~~~ 292 (349)
+|.+|+.+..-
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 1x4d_A 85 RVHLSQKYKRI 95 (102)
T ss_dssp EEEEECCCTTS
T ss_pred EEEECCCCCCC
Confidence 99999976544
No 147
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1.3e-18 Score=132.21 Aligned_cols=89 Identities=20% Similarity=0.423 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC-CCCCCccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~-~~~~~~~i 189 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|++.. +.+.++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45677899999999999999999999999999999999999899999999999999999999999999976 55567889
Q ss_pred cccccccCCC
Q 018927 190 RLNWATFSGS 199 (349)
Q Consensus 190 ~~~~~~~~~~ 199 (349)
+|.|+.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9998876543
No 148
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=127.92 Aligned_cols=76 Identities=29% Similarity=0.465 Sum_probs=73.1
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
++|||+|||+++++++|+++|+ .||.|.+++++.++.+++++|||||+|.+.++|++|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999996 99999999999999899999999999999999999999999 9999999999987
No 149
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=129.51 Aligned_cols=82 Identities=17% Similarity=0.397 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~--------~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~ 182 (349)
.+...++|||+|||+++|+++|+++|+.||.|.+ ++++.++.+|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567789999999999999999999999999999 99999998999999999999999999999999999999
Q ss_pred CCCCcccccccc
Q 018927 183 PNTDQPFRLNWA 194 (349)
Q Consensus 183 ~~~~~~i~~~~~ 194 (349)
.++.|+|.++
T Consensus 89 --~g~~l~V~~A 98 (99)
T 2la6_A 89 --SGNPIKVSFA 98 (99)
T ss_dssp --SSSBCEEEEC
T ss_pred --CCcEEEEEec
Confidence 5677887775
No 150
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-19 Score=133.13 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC--eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC--CCCCc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ--VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM--PNTDQ 187 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~--i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~--~~~~~ 187 (349)
...-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+|++||||||+|.+.++|.+|++.|++... ...++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345679999999999999999999999995 67999999999999999999999999999999999999741 12678
Q ss_pred ccccccccc
Q 018927 188 PFRLNWATF 196 (349)
Q Consensus 188 ~i~~~~~~~ 196 (349)
.|+|+|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 899988763
No 151
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=130.29 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
..+.++|||+|||+++|+++|+++|+.||+|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45778999999999999999999999999999999999998999999999999999999999999999999 5788888
Q ss_pred cccccCCC
Q 018927 192 NWATFSGS 199 (349)
Q Consensus 192 ~~~~~~~~ 199 (349)
.|+.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 88876544
No 152
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=8.4e-20 Score=157.93 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=77.0
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCC--CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G--~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..++|||+||++++|+++|+++|+ .|| .|++|+|++|+.++++||||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 456899999999999999999996 999 99999999999999999999999999999999999999999999999999
Q ss_pred EcCCC
Q 018927 285 VATPK 289 (349)
Q Consensus 285 ~a~~~ 289 (349)
+++++
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98753
No 153
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=137.97 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE--EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCC----CCCC
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS----LMPN 184 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~--~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~----~~~~ 184 (349)
.....++|||+|||+++||++|+++|+.||.|.. |+|++|+.+|++||||||+|.+. +|.+|++.|++. .+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-- 95 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-- 95 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--
Confidence 4466789999999999999999999999999976 99999999999999999999999 999999999999 77
Q ss_pred CCccccccccccCC
Q 018927 185 TDQPFRLNWATFSG 198 (349)
Q Consensus 185 ~~~~i~~~~~~~~~ 198 (349)
.++.|+|.|+....
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 66788888887543
No 154
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=127.49 Aligned_cols=80 Identities=20% Similarity=0.447 Sum_probs=73.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+.++|||+|||.++|+++|+++|+ .||.|.+|+++ +|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFE-QYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHH-TSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567999999999999999999997 99999999987 5799999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++++....
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999987653
No 155
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=4.3e-19 Score=130.68 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=70.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G--~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
.+|||+|||+++|+++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 4799999999999999999999999 999999999999999999999999999999999999999999 567788877
Q ss_pred cccC
Q 018927 194 ATFS 197 (349)
Q Consensus 194 ~~~~ 197 (349)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 156
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=5.7e-19 Score=136.80 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=76.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCC---eeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~---v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 281 (349)
....++|||+|||+++|+++|+++|+ .||. |.+|+|++++. ++++|||||+|.+.++|++||+ ||+..|+||.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 34567899999999999999999996 9999 89999999987 9999999999999999999997 99999999999
Q ss_pred EEEEcCCCC
Q 018927 282 RIDVATPKK 290 (349)
Q Consensus 282 ~v~~a~~~~ 290 (349)
+|.++..+.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999997654
No 157
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=130.77 Aligned_cols=86 Identities=23% Similarity=0.507 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3456778999999999999999999999999999999999998999999999999999999999999999999 56788
Q ss_pred cccccccC
Q 018927 190 RLNWATFS 197 (349)
Q Consensus 190 ~~~~~~~~ 197 (349)
+|.++..+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 88887643
No 158
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1.3e-18 Score=125.94 Aligned_cols=81 Identities=35% Similarity=0.597 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
+++|||+|||+++++++|+++|+.||+|.+++++.++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|++.|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 36899999999999999999999999999999999988999999999999999999999999999999 6788898888
Q ss_pred ccC
Q 018927 195 TFS 197 (349)
Q Consensus 195 ~~~ 197 (349)
..+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 754
No 159
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=9.7e-19 Score=127.28 Aligned_cols=82 Identities=22% Similarity=0.440 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45778999999999999999999999999999999999988999999999999999999999999999999 6688888
Q ss_pred cccc
Q 018927 192 NWAT 195 (349)
Q Consensus 192 ~~~~ 195 (349)
.|++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7763
No 160
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=3.9e-19 Score=140.54 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=76.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCC---eeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~---v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 281 (349)
....++|||+|||+++|+++|+++|+ .||. |.+|+|++|+. |+++|||||+|.+.++|++||+ ||+..|+||.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34567999999999999999999996 9999 89999999987 9999999999999999999998 99999999999
Q ss_pred EEEEcCCCC
Q 018927 282 RIDVATPKK 290 (349)
Q Consensus 282 ~v~~a~~~~ 290 (349)
+|.++.++.
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999987653
No 161
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=7.1e-19 Score=135.70 Aligned_cols=105 Identities=12% Similarity=0.200 Sum_probs=91.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
+...++|||+|||+++|+++|+++|+.||.|.+|+++.+ +.++|||||+|.+.++|.+|++.|+|..+ .++.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVV 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 456789999999999999999999999999999999875 45689999999999999999999999999 5688888
Q ss_pred cccccCCCCCccccCCCcceeccCCCCCCCHHHHHHHHhccCCC
Q 018927 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~ 235 (349)
.|+..... ..+++...++++|+++|. +||.
T Consensus 80 ~~a~~~~~-------------~~~~~~~~~~~~l~~~~~-~~g~ 109 (115)
T 3lqv_A 80 LYYNANRA-------------FQKMDTKKKEEQLKLLKE-KYGI 109 (115)
T ss_dssp EECCHHHH-------------TTTSCHHHHHHHHHHHHH-HHCC
T ss_pred EEecCChh-------------hhhhhHhHhHHHHHHHHH-HhCC
Confidence 88764321 157888899999999996 8884
No 162
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=132.25 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=77.1
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeee-eEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~-v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
....++|||+|||+++|+++|+++|. .||.|.+ |+|+.+ .+++++|||||+|.+.++|++||+. |+..|+||.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34567999999999999999999996 9999987 888888 7899999999999999999999976 999999999999
Q ss_pred EEcCCCCCC
Q 018927 284 DVATPKKAS 292 (349)
Q Consensus 284 ~~a~~~~~~ 292 (349)
.++.++.-.
T Consensus 89 ~~~~~~~~~ 97 (104)
T 1wg5_A 89 FKSSRAEVR 97 (104)
T ss_dssp EEECTTTSC
T ss_pred EECCHHHHH
Confidence 999876543
No 163
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-18 Score=127.45 Aligned_cols=80 Identities=23% Similarity=0.473 Sum_probs=72.6
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccC--CCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~--G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 281 (349)
.....++|||+|||+++|+++|+++|+ .| |.|.+|++. +|||||+|.+.++|.+|++.||+..|+|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345678999999999999999999997 99 999988764 5799999999999999999999999999999
Q ss_pred EEEEcCCCCCC
Q 018927 282 RIDVATPKKAS 292 (349)
Q Consensus 282 ~v~~a~~~~~~ 292 (349)
+|++++++...
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpd_A 82 EVTLAKPVDKD 92 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999987654
No 164
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=129.78 Aligned_cols=80 Identities=19% Similarity=0.431 Sum_probs=73.4
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC--CeeEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRI 283 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~i~v 283 (349)
.+.++|||+|||+++|+++|+++|+ .||.|.+|.+.++ +|||||+|.+.++|++|++.||+..|+ |+.|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFD-RFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHH-TTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 3567999999999999999999996 9999999998753 689999999999999999999999999 999999
Q ss_pred EEcCCCCCC
Q 018927 284 DVATPKKAS 292 (349)
Q Consensus 284 ~~a~~~~~~ 292 (349)
+|++++..+
T Consensus 88 ~~a~~~~~~ 96 (97)
T 1why_A 88 DFAKSGPSS 96 (97)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999997654
No 165
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=132.63 Aligned_cols=87 Identities=28% Similarity=0.447 Sum_probs=78.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++ .| .++.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~ 87 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRK 87 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999998 67 6788
Q ss_pred ccccccccCC
Q 018927 189 FRLNWATFSG 198 (349)
Q Consensus 189 i~~~~~~~~~ 198 (349)
|+|.|+....
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 8998886543
No 166
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=130.57 Aligned_cols=85 Identities=20% Similarity=0.427 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 96 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPIS 96 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999 568888
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+...
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 8887654
No 167
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=138.20 Aligned_cols=83 Identities=25% Similarity=0.505 Sum_probs=77.7
Q ss_pred cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 203 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
......++|||+|||..+++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEEc
Q 018927 283 IDVA 286 (349)
Q Consensus 283 v~~a 286 (349)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=2.9e-18 Score=140.81 Aligned_cols=82 Identities=23% Similarity=0.513 Sum_probs=78.2
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcC
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 287 (349)
+++|||+|||+++|+++|+++|+ .||.|.++++++++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 56899999999999999999997 99999999999999899999999999999999999999999999999999999998
Q ss_pred CCC
Q 018927 288 PKK 290 (349)
Q Consensus 288 ~~~ 290 (349)
++.
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 754
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=2.1e-18 Score=141.91 Aligned_cols=83 Identities=28% Similarity=0.500 Sum_probs=78.8
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
++++|||+|||.++++++|+++|+ .||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 457999999999999999999997 9999999999999989999999999999999999999999999999999999999
Q ss_pred CCCC
Q 018927 287 TPKK 290 (349)
Q Consensus 287 ~~~~ 290 (349)
.++.
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8754
No 170
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=9.3e-20 Score=134.27 Aligned_cols=82 Identities=33% Similarity=0.564 Sum_probs=73.8
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
++|||+|||.++++++|+++|+ .||.|.+|++++++.+++++|||||+|.+.+ |.+|++.|||..|+|+.|+|++|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4799999999999999999997 9999999999999999999999999999999 9999999999999999999999998
Q ss_pred CCCC
Q 018927 289 KKAS 292 (349)
Q Consensus 289 ~~~~ 292 (349)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7544
No 171
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.5e-18 Score=129.86 Aligned_cols=86 Identities=22% Similarity=0.426 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.|| |.+|+|++++.+++++|||||+|.+.++|++|+ .|++..| .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l 85 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSL 85 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEEC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEE
Confidence 3456778999999999999999999999997 999999999999999999999999999999999 8999999 67888
Q ss_pred cccccccCCC
Q 018927 190 RLNWATFSGS 199 (349)
Q Consensus 190 ~~~~~~~~~~ 199 (349)
+|.|+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9988876543
No 172
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=8.8e-19 Score=132.86 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=75.9
Q ss_pred cCCCcceeccCCCCCC------CHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCC
Q 018927 205 ACSDLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~------t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 278 (349)
....++|||+|||+.+ |+++|+++|+ .||.|.+|+|+ +.+|+++|||||+|.+.++|.+|++.|||..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3446799999999999 7899999997 99999999988 4678999999999999999999999999999999
Q ss_pred e-eEEEEEcCCCC
Q 018927 279 R-PMRIDVATPKK 290 (349)
Q Consensus 279 ~-~i~v~~a~~~~ 290 (349)
+ .|+|.++.+..
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999998754
No 173
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.2e-19 Score=132.06 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 345788999999999999999999999999999999999988999999999999999999999999999999 678899
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
|.|+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 998876543
No 174
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=131.89 Aligned_cols=82 Identities=22% Similarity=0.457 Sum_probs=75.5
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||..+++++|+++|+ .||.|.+|+|+.+ +|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHH-HHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999997 9999999999865 6899999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
|++++....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 999987654
No 175
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=131.79 Aligned_cols=85 Identities=22% Similarity=0.454 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 79 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIK 79 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 34567899999999999999999999999999999999998 999999999999999999999999999999 567888
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
|.|+....
T Consensus 80 V~~a~~~~ 87 (116)
T 2fy1_A 80 VEQAKKPS 87 (116)
T ss_dssp EEECCCSS
T ss_pred EEECCCCC
Confidence 88887544
No 176
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7e-18 Score=127.65 Aligned_cols=86 Identities=28% Similarity=0.479 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC-CCCCCcc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQP 188 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~-~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~-~~~~~~~ 188 (349)
.....++|||+|||+++|+++|+++|+. ||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|++.. + .++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEe
Confidence 3456789999999999999999999999 9999999999999 99999999999999999999999999998 8 5677
Q ss_pred ccccccccCCC
Q 018927 189 FRLNWATFSGS 199 (349)
Q Consensus 189 i~~~~~~~~~~ 199 (349)
|++.|+.....
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 88888765443
No 177
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-19 Score=136.16 Aligned_cols=85 Identities=16% Similarity=0.452 Sum_probs=77.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|.. .++.+..+++++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 34567999999999999999999997 9999988 677777788999999999999999999998 99999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99987655
No 178
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=130.03 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=72.3
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCe--EeCCeeEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV--YCSSRPMR 282 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~i~ 282 (349)
..++++|||+|||+++++++|+++|+ .||.|.+|.|+++ ||||||+|++.++|.+|++.|++. .|+|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALE-KFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 44678999999999999999999996 9999999998753 689999999999999999988754 58999999
Q ss_pred EEEcCCCCCC
Q 018927 283 IDVATPKKAS 292 (349)
Q Consensus 283 v~~a~~~~~~ 292 (349)
|.|++.+...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999987654
No 179
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=125.31 Aligned_cols=80 Identities=18% Similarity=0.418 Sum_probs=73.3
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|.+|++++ +||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45667999999999999999999997 999999999873 499999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++++....
T Consensus 78 ~a~~~~~~~ 86 (92)
T 2dgt_A 78 LSTSRLRTA 86 (92)
T ss_dssp ESSCCCSCC
T ss_pred EccCCCCCC
Confidence 999876653
No 180
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-19 Score=139.38 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=77.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|.++.++.+..+++++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567999999999999999999996 99999998888887899999999999999999999998 99999999999999
Q ss_pred EcCCCC
Q 018927 285 VATPKK 290 (349)
Q Consensus 285 ~a~~~~ 290 (349)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998764
No 181
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=130.64 Aligned_cols=87 Identities=28% Similarity=0.407 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++++++|+++|+.||+|.+|+|+.++.+++++|||||+|.+.++|.+|++. ++..| .++.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l 87 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNI 87 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEE
Confidence 3557789999999999999999999999999999999999998999999999999999999999988 99888 66888
Q ss_pred cccccccCCC
Q 018927 190 RLNWATFSGS 199 (349)
Q Consensus 190 ~~~~~~~~~~ 199 (349)
+|.|+.....
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 8888875543
No 182
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=9.5e-19 Score=133.04 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=73.5
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
...+|||+|||+++|+++|+++|+ .| .|.+|+|++|+. |+++|||||+|.+.++|++|| .+|+..|+||.|+|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~-~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFH-GL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTT-TS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhc-cC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346899999999999999999996 89 899999999976 999999999999999999999 79999999999999998
Q ss_pred CCC
Q 018927 287 TPK 289 (349)
Q Consensus 287 ~~~ 289 (349)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 764
No 183
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=2.8e-18 Score=144.89 Aligned_cols=86 Identities=26% Similarity=0.429 Sum_probs=77.6
Q ss_pred ccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
.....++|||+|||+++|+++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+||+. ++..|+|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 344667999999999999999999996 999999999999999999999999999999999999955 999999999999
Q ss_pred EEcCCCCC
Q 018927 284 DVATPKKA 291 (349)
Q Consensus 284 ~~a~~~~~ 291 (349)
.++.++..
T Consensus 87 ~~~~~~~~ 94 (196)
T 1l3k_A 87 KRAVSRED 94 (196)
T ss_dssp EECCC---
T ss_pred ecccCccc
Confidence 99987654
No 184
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=129.90 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC-CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~-g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
......++|||+|||+++|+++|+++|+.|| |.+|+|+.++.+ |+++|||||+|.+.++|++|| .|++..| .++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~ 85 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKR 85 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcE
Confidence 3445678999999999999999999999999 999999999887 999999999999999999999 9999998 6788
Q ss_pred ccccccccCCC
Q 018927 189 FRLNWATFSGS 199 (349)
Q Consensus 189 i~~~~~~~~~~ 199 (349)
|+|.++.....
T Consensus 86 l~V~~a~~~~~ 96 (104)
T 1wi8_A 86 IRVDVADQAQD 96 (104)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEccCCCC
Confidence 88888876543
No 185
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2e-18 Score=128.69 Aligned_cols=82 Identities=22% Similarity=0.448 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
+++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|++.|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEEc
Confidence 57999999999999999999999999999999999998999999999999999999999999999999 5688999888
Q ss_pred ccCC
Q 018927 195 TFSG 198 (349)
Q Consensus 195 ~~~~ 198 (349)
....
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7553
No 186
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=4.4e-18 Score=130.17 Aligned_cols=96 Identities=26% Similarity=0.462 Sum_probs=78.7
Q ss_pred CccccccccccCCCCCccccCCCcceeccCCCCC-CCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHH
Q 018927 186 DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (349)
Q Consensus 186 ~~~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A 264 (349)
+..+++..+..... .......++|||+|||++ +++++|+++|+ .||.|.+|.| ++|||||+|.+.++|
T Consensus 7 g~~~~~~~s~~~~~--~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 7 GMSLKLQASNVTNK--NDPKSINSRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp SCCCCCCCCCSCCS--CCCTTCSSEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CcccccccCCCCCC--CCCCCCCcEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 44555554433211 222345579999999999 99999999996 9999999988 478999999999999
Q ss_pred HHHHHHhCCeEeCCeeEEEEEcCCCCCC
Q 018927 265 SRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 265 ~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 292 (349)
++|++.||+..|+|+.|+|+++++++..
T Consensus 76 ~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 76 RAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp HHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred HHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999999999876544
No 187
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=131.91 Aligned_cols=87 Identities=16% Similarity=0.291 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~--------~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~ 182 (349)
.....++|||+|||+++|+++|+++|+.||.|. .|+|+.++.+|+++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCCCccccccccccCCC
Q 018927 183 PNTDQPFRLNWATFSGS 199 (349)
Q Consensus 183 ~~~~~~i~~~~~~~~~~ 199 (349)
.++.|+|.|+.....
T Consensus 91 --~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPP 105 (113)
T ss_dssp --TTEECEEECSSCCCC
T ss_pred --CCCEEEEEECCCCCC
Confidence 578889988876543
No 188
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1.2e-18 Score=132.72 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=71.1
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
..++|||+|||+++++++|+++|+ .|| .|..+.|..+ .++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAR-ENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHH-HHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456899999999999999999997 999 8999988643 4789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 018927 286 ATPKKA 291 (349)
Q Consensus 286 a~~~~~ 291 (349)
++.+..
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 986543
No 189
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=127.47 Aligned_cols=81 Identities=19% Similarity=0.346 Sum_probs=73.5
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|. +.++++ .++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALR-ELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHH-HTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHH-hcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567999999999999999999997 999997 777764 578999999999999999999999999999999999
Q ss_pred EcCCCCC
Q 018927 285 VATPKKA 291 (349)
Q Consensus 285 ~a~~~~~ 291 (349)
+++++..
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9998764
No 190
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=127.97 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC--CCCCCCCcc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQP 188 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g--~~~~~~~~~ 188 (349)
.+...++|||+|||+++||++|+++|++||+|.+|+|+++ ||||||+|.+.++|++|++.|++ ..+ .+++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEE
Confidence 3457789999999999999999999999999999999986 49999999999999999998875 456 6789
Q ss_pred ccccccccCCC
Q 018927 189 FRLNWATFSGS 199 (349)
Q Consensus 189 i~~~~~~~~~~ 199 (349)
|+|.|+..+..
T Consensus 84 l~V~~A~~~~~ 94 (105)
T 1sjq_A 84 IYIQFSNHKEL 94 (105)
T ss_dssp CCBCCCSSSSC
T ss_pred EEEEEcCCCCC
Confidence 99999876543
No 191
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=129.37 Aligned_cols=85 Identities=29% Similarity=0.574 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~-~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
...++|||+|||+++|+++|+++|+.||.|.++ +|++++.++.++|||||+|.+.++|++|++.|++..+ .++.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999998 6788899
Q ss_pred cccccCCC
Q 018927 192 NWATFSGS 199 (349)
Q Consensus 192 ~~~~~~~~ 199 (349)
.|+.....
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 88875543
No 192
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=128.34 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~---~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.+.++|||+|||+++|+++|+++|+.||+|.+|+++.++. +++++|||||+|.+.++|++|++.|++..+ .++.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 4678999999999999999999999999999999999876 668999999999999999999999999998 57888
Q ss_pred cccccccCCC
Q 018927 190 RLNWATFSGS 199 (349)
Q Consensus 190 ~~~~~~~~~~ 199 (349)
+|.|+.....
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 8888876543
No 193
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=126.34 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeec
Confidence 4678999999999999999999999999999999999998999999999999999999999999999988 56777776
Q ss_pred ccc
Q 018927 193 WAT 195 (349)
Q Consensus 193 ~~~ 195 (349)
|..
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 194
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=126.49 Aligned_cols=87 Identities=22% Similarity=0.412 Sum_probs=77.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......++|||+|||+++|+++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|++|++.|++..| .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 84 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EGRK 84 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEE
Confidence 34556789999999999999999999999999999999999863 3889999999999999999999999998 6788
Q ss_pred ccccccccCCC
Q 018927 189 FRLNWATFSGS 199 (349)
Q Consensus 189 i~~~~~~~~~~ 199 (349)
|+|.|+.....
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cq3_A 85 IEVNNATARVM 95 (103)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEcccCCC
Confidence 89888876543
No 195
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=129.78 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.|++..| .++.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999998 568888
Q ss_pred cccccc
Q 018927 191 LNWATF 196 (349)
Q Consensus 191 ~~~~~~ 196 (349)
|.++..
T Consensus 89 V~~a~~ 94 (98)
T 2cqp_A 89 LVLGSG 94 (98)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 887653
No 196
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.4e-18 Score=127.65 Aligned_cols=86 Identities=27% Similarity=0.516 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeE
Confidence 4556789999999999999999999999999999999999863 3689999999999999999999999998 57889
Q ss_pred cccccccCCC
Q 018927 190 RLNWATFSGS 199 (349)
Q Consensus 190 ~~~~~~~~~~ 199 (349)
+|.|+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9999876543
No 197
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=127.86 Aligned_cols=82 Identities=18% Similarity=0.452 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++++++|+++|+.||+|.+|+|+.++. ++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEE
Confidence 456778999999999999999999999999999999999984 99999999999999999999999999998 568888
Q ss_pred ccccc
Q 018927 191 LNWAT 195 (349)
Q Consensus 191 ~~~~~ 195 (349)
|.|++
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 88765
No 198
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=128.72 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|++|++.|++..| .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEE
Confidence 44567899999999999999999999999999999999998 699999999999999999999999999999 567888
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+...
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 8887643
No 199
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=134.89 Aligned_cols=83 Identities=13% Similarity=0.265 Sum_probs=74.5
Q ss_pred cCCCcceeccCCCCCCCHHHHH----HHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCee
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~----~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 280 (349)
..++++|||+|||+.+++++|+ ++|+ .||.|.+|.+.. +++++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALAS-SQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhc-cCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 3456799999999999999876 6897 999999988753 5789999999999999999999999999999999
Q ss_pred EEEEEcCCCCC
Q 018927 281 MRIDVATPKKA 291 (349)
Q Consensus 281 i~v~~a~~~~~ 291 (349)
|+|.||+.+..
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999998754
No 200
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=127.70 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=74.4
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
..+.++|||+|||+++|+++|+++|+ .||.|.+|++.++ +|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTS-TTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-hcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 34567999999999999999999996 9999999998843 6899999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
+++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99987654
No 201
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=126.40 Aligned_cols=80 Identities=28% Similarity=0.496 Sum_probs=71.3
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCC-eeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC-eEeCCeeEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRI 283 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~-v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~i~v 283 (349)
...++|||+|||+++|+++|+++|+ .||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|+|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFG-DRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHH-HTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-HcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 3567999999999999999999996 9999 6666653 478999999999999999999999 9999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++..+.
T Consensus 78 ~~a~~~~~~~ 87 (93)
T 2cqh_A 78 DYSVSKKLRS 87 (93)
T ss_dssp EECCCCCCCC
T ss_pred EEccCccccC
Confidence 9999876553
No 202
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.1e-18 Score=131.11 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 113 DETKTIWIGDLFH------WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 113 ~~~~~l~V~nLp~------~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
...++|||+|||+ ++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|+|..+ .+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--DL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--SS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--CC
Confidence 4568999999999 999999999999999999999999999999999999999999999999999999999 55
Q ss_pred -cccccccccc
Q 018927 187 -QPFRLNWATF 196 (349)
Q Consensus 187 -~~i~~~~~~~ 196 (349)
+.|++.++.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 7888887753
No 203
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.5e-18 Score=129.42 Aligned_cols=76 Identities=13% Similarity=0.270 Sum_probs=71.2
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+|||.++++++|+++|+ .||.|.+|++. +++|||||+|.+.++|.+|++.|||..|+|+.|+|+|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQ-NFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHH-TTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHH-hCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 457999999999999999999997 99999999987 35799999999999999999999999999999999999
Q ss_pred CCC
Q 018927 287 TPK 289 (349)
Q Consensus 287 ~~~ 289 (349)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 204
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=3.7e-18 Score=130.55 Aligned_cols=86 Identities=20% Similarity=0.412 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999 678899
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
|.|+....
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 98887543
No 205
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=125.68 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
...+.++|||+|||++++|++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.|++..+...++.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998875 4999999999999999999888765434788999
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
+.|+.....
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999876543
No 206
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=130.97 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=72.8
Q ss_pred cCCCcceeccCCCCC-CCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC--CeEeCCeeE
Q 018927 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPM 281 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~i 281 (349)
..++++|||+|||++ +|+++|+++|+ .||.|.+|+|++ +||||||+|++.++|.+|++.|+ +..|+||.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~-~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAE-PYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTT-TTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHH-hcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 456789999999998 99999999996 999999999973 47899999999999999999886 456999999
Q ss_pred EEEEcCCCCCCC
Q 018927 282 RIDVATPKKASG 293 (349)
Q Consensus 282 ~v~~a~~~~~~~ 293 (349)
+|.+++.+....
T Consensus 95 ~V~~a~~~~~~~ 106 (112)
T 1x4f_A 95 KVDLSEKYKKLV 106 (112)
T ss_dssp EEEEECSCSSSS
T ss_pred EEEECccccccc
Confidence 999998876553
No 207
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=1.4e-17 Score=123.04 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++++++|+++|+.||.|.+|+++++ +|+++|||||+|.+.++|++|++.|++..+ .++.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 356789999999999999999999999999999999984 789999999999999999999999999999 5678888
Q ss_pred cccccCC
Q 018927 192 NWATFSG 198 (349)
Q Consensus 192 ~~~~~~~ 198 (349)
.|+....
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 8877543
No 208
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=6.6e-19 Score=124.98 Aligned_cols=75 Identities=27% Similarity=0.502 Sum_probs=71.4
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
+|||+|||+++++++|+++|+ .||.|.+|.+++++.++.++|||||+|.+.++|.+|++ +++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 599999999999999999997 99999999999999999999999999999999999996 5899999999999986
No 209
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=5.3e-18 Score=129.11 Aligned_cols=81 Identities=23% Similarity=0.474 Sum_probs=72.7
Q ss_pred cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 203 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
......++|||+|||+++|+++|+++|+ .||.|.+|+++ +|||||+|.+.++|++|++.|||..|+|+.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFG-PFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHT-TTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3345678999999999999999999996 99999999987 68999999999999999999999999999999
Q ss_pred EEEcCCCCCC
Q 018927 283 IDVATPKKAS 292 (349)
Q Consensus 283 v~~a~~~~~~ 292 (349)
|++++++..+
T Consensus 97 V~~a~~~~~r 106 (108)
T 2jvo_A 97 VVYSKLPAKR 106 (108)
T ss_dssp EESCSCCC--
T ss_pred EEEecCCCCC
Confidence 9999987654
No 210
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=5.6e-19 Score=134.44 Aligned_cols=83 Identities=14% Similarity=0.231 Sum_probs=76.9
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCC---eeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~---v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 281 (349)
....++|||+|||+++|+++|+++|+ .||. |.+|+|++|+. |+++|||||+|.+.++|++||+ +|+..|+||.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 44667999999999999999999996 9888 89999999987 9999999999999999999997 99999999999
Q ss_pred EEEEcCCCC
Q 018927 282 RIDVATPKK 290 (349)
Q Consensus 282 ~v~~a~~~~ 290 (349)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999998754
No 211
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=127.69 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=73.7
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++++++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHC-SEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-hCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999996 89988766 2468899999999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
+++++...
T Consensus 87 ~a~~~~~~ 94 (96)
T 1fjc_A 87 YTGEKGGT 94 (96)
T ss_dssp ECSSSCCC
T ss_pred EcCCCCCC
Confidence 99987654
No 212
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=127.53 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||+|.+|+|++|+. |+++|||||+|.+.++|.+|+. +++..+ .++.|+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~ 82 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLL 82 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEE
Confidence 345668999999999999999999999999999999999986 9999999999999999999998 899988 556677
Q ss_pred ccccc
Q 018927 191 LNWAT 195 (349)
Q Consensus 191 ~~~~~ 195 (349)
|.|+.
T Consensus 83 V~~~~ 87 (103)
T 1s79_A 83 ILFKD 87 (103)
T ss_dssp EEEHH
T ss_pred EEEch
Confidence 76654
No 213
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=8.7e-18 Score=125.38 Aligned_cols=78 Identities=17% Similarity=0.362 Sum_probs=71.4
Q ss_pred ccCCCcceeccCCCC-CCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 204 EACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
...++++|||+|||+ ++++++|+++|+ .||.|.+|++. +|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345678999999998 999999999997 99999999883 68999999999999999999999999999999
Q ss_pred EEEcCCCC
Q 018927 283 IDVATPKK 290 (349)
Q Consensus 283 v~~a~~~~ 290 (349)
|++++++.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99998764
No 214
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=126.04 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=76.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......++|||+|||+++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++ ++..+ .++.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~ 84 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRW 84 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeE
Confidence 3455678899999999999999999999999999999999999899999999999999999999998 35556 6688
Q ss_pred ccccccccCCC
Q 018927 189 FRLNWATFSGS 199 (349)
Q Consensus 189 i~~~~~~~~~~ 199 (349)
|++.|+.....
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cqg_A 85 CDCKLPNSKQS 95 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEEecCCCCc
Confidence 88888876543
No 215
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=138.38 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G--~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
...++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|++||+.|+|..| .++.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeE
Confidence 4668999999999999999999999999 999999999999999999999999999999999999999999 668888
Q ss_pred cccccc
Q 018927 191 LNWATF 196 (349)
Q Consensus 191 ~~~~~~ 196 (349)
|.++..
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 887753
No 216
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=127.49 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
...+.++|||+|||+ ++||++|+++|++||.|.+|+|++++ |||||+|.+.++|.+|++.|++......+++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 455788999999999 99999999999999999999998765 89999999999999999999876533378999
Q ss_pred cccccccC
Q 018927 190 RLNWATFS 197 (349)
Q Consensus 190 ~~~~~~~~ 197 (349)
+|.|+...
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99998754
No 217
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=5.1e-18 Score=124.04 Aligned_cols=81 Identities=25% Similarity=0.432 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++ +++..+ .++.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEEEE
Confidence 45678899999999999999999999999999999999999899999999999999999999996 477767 566676
Q ss_pred cccc
Q 018927 191 LNWA 194 (349)
Q Consensus 191 ~~~~ 194 (349)
+.++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6553
No 218
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.6e-18 Score=137.79 Aligned_cols=80 Identities=24% Similarity=0.467 Sum_probs=74.6
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
++|||+|||.++|+++|+++|+ .||.|.+|+++.++. ++++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQ-VGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHG-GGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 4799999999999999999996 999999999999965 78999999999999999999999999999999999999977
Q ss_pred CC
Q 018927 289 KK 290 (349)
Q Consensus 289 ~~ 290 (349)
+.
T Consensus 79 ~~ 80 (166)
T 3md3_A 79 SQ 80 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 219
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=125.87 Aligned_cols=73 Identities=19% Similarity=0.383 Sum_probs=67.6
Q ss_pred cceeccCCCCCC------CHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCe-eE
Q 018927 209 LSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-PM 281 (349)
Q Consensus 209 ~~l~V~nl~~~~------t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~i 281 (349)
++|||+|||..+ |+++|+++|+ .||.|.+|+|+ +.+|+++|||||+|.+.++|.+|++.|||..|+|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 589999999999 7799999997 99999999987 46789999999999999999999999999999999 88
Q ss_pred EEE
Q 018927 282 RID 284 (349)
Q Consensus 282 ~v~ 284 (349)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 773
No 220
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=123.00 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=72.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|.+|++++ +||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFE-RRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHH-HHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-cCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44667999999999999999999997 999999999873 499999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
+++++..+
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99987654
No 221
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=3.3e-18 Score=127.73 Aligned_cols=83 Identities=22% Similarity=0.404 Sum_probs=75.6
Q ss_pred cCCCcceeccCCCCCCCHHHHH----HHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCee
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~----~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 280 (349)
..++++|||+|||.++++++|+ ++|+ .||.|.+|.+.. ++.++|||||+|.+.++|.+|++.|||..|+|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFS-RFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHG-GGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 3466799999999999999999 9996 999999998873 4778999999999999999999999999999999
Q ss_pred EEEEEcCCCCC
Q 018927 281 MRIDVATPKKA 291 (349)
Q Consensus 281 i~v~~a~~~~~ 291 (349)
|+|++++++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999998754
No 222
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=7.8e-18 Score=123.56 Aligned_cols=81 Identities=19% Similarity=0.386 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
..++|||+|||+++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|+ .+++..+ .++.|++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEE
Confidence 4579999999999999999999999999999999999989999999999999999999999 9999998 678888888
Q ss_pred cccC
Q 018927 194 ATFS 197 (349)
Q Consensus 194 ~~~~ 197 (349)
++..
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 7643
No 223
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-17 Score=126.14 Aligned_cols=85 Identities=25% Similarity=0.494 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC------
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN------ 184 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~------ 184 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.|+|..+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999854
Q ss_pred CCcccccccccc
Q 018927 185 TDQPFRLNWATF 196 (349)
Q Consensus 185 ~~~~i~~~~~~~ 196 (349)
.++++++.|+.+
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 346677777663
No 224
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=1.8e-18 Score=128.65 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++|+++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.|++..+ .++.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999 56778877
Q ss_pred ccc
Q 018927 193 WAT 195 (349)
Q Consensus 193 ~~~ 195 (349)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 654
No 225
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.1e-18 Score=126.99 Aligned_cols=80 Identities=16% Similarity=0.329 Sum_probs=71.4
Q ss_pred cCCCcceeccCCCC-CCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 205 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
..+.++|||+|||+ .+++++|+++|+ .||.|.+|+|. +|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHT-TTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34677999999998 999999999996 99999999984 689999999999999999999999999999999
Q ss_pred EEcCCCCCCC
Q 018927 284 DVATPKKASG 293 (349)
Q Consensus 284 ~~a~~~~~~~ 293 (349)
++++++....
T Consensus 78 ~~a~~~~~~~ 87 (96)
T 2kvi_A 78 EVSSSNARPQ 87 (96)
T ss_dssp EEEECCCC--
T ss_pred EEcCcCCCCC
Confidence 9998876543
No 226
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=121.32 Aligned_cols=76 Identities=16% Similarity=0.354 Sum_probs=70.4
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHh-CCeEeCCeeEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRI 283 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~i~v 283 (349)
....++|||+|||.++++++|+++|+ .||.|.+|+++++ +|||||+|.+.++|.+|++.| ++..++|+.|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFY-QFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHH-hCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 44667999999999999999999997 9999999999853 789999999999999999988 999999999999
Q ss_pred EEcC
Q 018927 284 DVAT 287 (349)
Q Consensus 284 ~~a~ 287 (349)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 227
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.2e-17 Score=130.93 Aligned_cols=86 Identities=21% Similarity=0.448 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|++|++.|++..| .++.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999 667888
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
|.|+....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 88887544
No 228
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=5.4e-18 Score=129.35 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.+ +..+ .++.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEE
Confidence 45567889999999999999999999999999999999999989999999999999999999999876 4666 66888
Q ss_pred cccccccCC
Q 018927 190 RLNWATFSG 198 (349)
Q Consensus 190 ~~~~~~~~~ 198 (349)
++.++....
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 888876543
No 229
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=5e-18 Score=130.90 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=75.6
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
..+++|||+|||+.+|+++|+++|+ .||.|.+|.|+.+ +.++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999997 9999999999976 45699999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 018927 286 ATPKKAS 292 (349)
Q Consensus 286 a~~~~~~ 292 (349)
+.++...
T Consensus 82 a~~~~~~ 88 (115)
T 3lqv_A 82 YNANRAF 88 (115)
T ss_dssp CCHHHHT
T ss_pred ecCChhh
Confidence 9875433
No 230
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.7e-18 Score=128.83 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=72.2
Q ss_pred cceeccCC----CCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCe
Q 018927 209 LSIFVGDL----APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD----ENE----RSRAMT--EMNGV 274 (349)
Q Consensus 209 ~~l~V~nl----~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~----~~~----A~~A~~--~l~g~ 274 (349)
.+|||+|| |+.+++++|+++|+ .||+|.+|.++.|+.||+++|||||+|.+ .++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 99999999999997 99999999999999999999999999996 322 889988 78999
Q ss_pred EeCCeeEEEEEcCCC
Q 018927 275 YCSSRPMRIDVATPK 289 (349)
Q Consensus 275 ~~~g~~i~v~~a~~~ 289 (349)
.|+||.|+|.+.+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999986653
No 231
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=125.71 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.+...++|||+|||+++||++|+++|+.||.+ +|+|+.|+ +|+++|||||+|.+.++|++|| .+++..| .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANM--QHRYVE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeE--CCcEEE
Confidence 34567899999999999999999999999954 99999998 8999999999999999999999 4799888 556777
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.++...
T Consensus 86 V~~~~~~ 92 (102)
T 1wez_A 86 LFLNSTA 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 7766543
No 232
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=133.36 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCe----eeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSV----KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v----~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
...+|||+|||+++|+++|+++|+ .||.| .+|+|++| .+|+++|||||+|.+.++|++||+. |+..|+||.|+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999996 99875 68999999 4799999999999999999999965 99999999999
Q ss_pred EEEcCCCC
Q 018927 283 IDVATPKK 290 (349)
Q Consensus 283 v~~a~~~~ 290 (349)
|..+.++.
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 233
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=5.5e-18 Score=127.27 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecC-CCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~-~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.....++|||+|||+++++++|+++|+.|| |.+|+|++++ .+|+++|||||+|.+.++|.+|+ .|++..+ .++.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEE
Confidence 446779999999999999999999999999 9999999998 68999999999999999999999 8999999 66788
Q ss_pred cccccccC
Q 018927 190 RLNWATFS 197 (349)
Q Consensus 190 ~~~~~~~~ 197 (349)
++.++...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 88887643
No 234
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=124.53 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=71.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCCCCCCc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQ 187 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~--g~~~~~~~~ 187 (349)
....+.++|||+|||+++|+++|+++|+.||.|.+|+++++ ||||||+|.+.++|.+|++.|+ +..+ .++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr 81 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL--RNQ 81 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE--TTE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCc
Confidence 34457789999999999999999999999999999999876 4999999999999999999875 4445 788
Q ss_pred cccccccccCCC
Q 018927 188 PFRLNWATFSGS 199 (349)
Q Consensus 188 ~i~~~~~~~~~~ 199 (349)
.|+|.|+.....
T Consensus 82 ~l~V~~a~~~~~ 93 (101)
T 2cq1_A 82 PIYIQYSNHKEL 93 (101)
T ss_dssp ECEEEECSCSSC
T ss_pred EEEEEEcCcccC
Confidence 999999875543
No 235
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-17 Score=124.50 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|..+ +.++|||||+|.+.++|++|++.|++..| .++.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 4567789999999999999999999999999999999654 46889999999999999999999999998 678899
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
|.|+.....
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 998876543
No 236
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.2e-17 Score=127.02 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 44677899999999999999999999999999999999998 999999999999999999999999999999 667888
Q ss_pred ccccc
Q 018927 191 LNWAT 195 (349)
Q Consensus 191 ~~~~~ 195 (349)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 87754
No 237
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=125.50 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~-~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.....++|||+|||+++|+++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|++||+. ++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i 86 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYI 86 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEE
Confidence 3456789999999999999999999999999987 888888 6999999999999999999999987 99888 55677
Q ss_pred ccccccc
Q 018927 190 RLNWATF 196 (349)
Q Consensus 190 ~~~~~~~ 196 (349)
+|.++..
T Consensus 87 ~v~~~~~ 93 (104)
T 1wg5_A 87 EIFKSSR 93 (104)
T ss_dssp EEEEECT
T ss_pred EEEECCH
Confidence 7776653
No 238
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.1e-18 Score=126.99 Aligned_cols=83 Identities=23% Similarity=0.514 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.|++.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999 66788888
Q ss_pred ccccC
Q 018927 193 WATFS 197 (349)
Q Consensus 193 ~~~~~ 197 (349)
|+...
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 87654
No 239
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=8.2e-18 Score=123.12 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCC-ccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ-SEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~-~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
..++|||+|||+++|+++|+++|+.||.|.+++++.+..++. ++|||||+|.+.++|.+|++.|+|..+ .++.|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEE
Confidence 568999999999999999999999999999999999987766 899999999999999999999999999 67888888
Q ss_pred ccccC
Q 018927 193 WATFS 197 (349)
Q Consensus 193 ~~~~~ 197 (349)
++...
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 87543
No 240
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=5.4e-18 Score=120.22 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=69.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
+|||+|||+++|+++|+++|+.||+|.+++++.++.+|+++|||||+|.+.++|++|++ +++..+ .++.+++.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999997 899999 5566776653
No 241
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-17 Score=120.84 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=72.2
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|| ++|+++|+++|+ .||.|.+|+|. .++|||||+|.+.++|.+||+.||+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~-~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHT-TTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHh-hCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345679999996 999999999996 99999999984 567999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 018927 285 VATPKKASG 293 (349)
Q Consensus 285 ~a~~~~~~~ 293 (349)
+++++....
T Consensus 83 ~a~~~~~~~ 91 (97)
T 1x5p_A 83 IARKQPMLD 91 (97)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCCCCC
Confidence 999876553
No 242
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=2e-17 Score=134.68 Aligned_cols=85 Identities=26% Similarity=0.479 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||+|.+|+|+.++.++.++|||||+|.+.++|++||+.|++..| .++.|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 112 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIR 112 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 445778999999999999999999999999999999999999999999999999999999999999999999 678899
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+...
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 9998754
No 243
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=6.3e-18 Score=130.30 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=67.4
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCee-----E
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP-----M 281 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-----i 281 (349)
..++|||+|||+++|+++|+++|. .||.|.+|.|+.+ |||||+|++.++|++||+.||+..|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 457999999999999999999996 9999999999865 89999999999999999999999999998 8
Q ss_pred EEEEcCCCCCC
Q 018927 282 RIDVATPKKAS 292 (349)
Q Consensus 282 ~v~~a~~~~~~ 292 (349)
+|..+.++...
T Consensus 87 ~v~~~~~~~~~ 97 (115)
T 3beg_B 87 RVKVDGPRSPS 97 (115)
T ss_dssp EEEECC----C
T ss_pred EeccCCCCCCC
Confidence 88887776544
No 244
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=133.08 Aligned_cols=82 Identities=22% Similarity=0.446 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||+|.++++++++.+|+++|||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 445778999999999999999999999999999999999988999999999999999999999999999988 567777
Q ss_pred cccc
Q 018927 191 LNWA 194 (349)
Q Consensus 191 ~~~~ 194 (349)
|.|+
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 7664
No 245
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=6.5e-18 Score=133.94 Aligned_cols=87 Identities=21% Similarity=0.414 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|++..| .++.|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~ 120 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELR 120 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999999999999 567888
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
|.|++....
T Consensus 121 V~~a~~~~~ 129 (135)
T 2lea_A 121 VQMARYGRP 129 (135)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 888875533
No 246
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=5.2e-17 Score=126.90 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++++++|+++|+.||+|.+|+|+.++ +|+++|||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 45677899999999999999999999999999999999998 999999999999999999999999999998 568888
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+...
T Consensus 108 V~~a~~~ 114 (124)
T 2kt5_A 108 IQLVASQ 114 (124)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 8887754
No 247
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=124.24 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
...++++|||+|||+++|+++|+++|++||.|.+++++++ ||||||+|.+.++|.+|++.|++..+...+++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 4457789999999999999999999999999999999864 4899999999999999999999887444788999
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9998754
No 248
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.8e-17 Score=121.31 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.3
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+|||+++++++|+++|+ .| .|.++++. +++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~-~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLK-DY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTC-SS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-hC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999996 99 99999884 57899999999999999999999999999999999999
Q ss_pred CCCC
Q 018927 287 TPKK 290 (349)
Q Consensus 287 ~~~~ 290 (349)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7754
No 249
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=2.8e-17 Score=132.59 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=71.5
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCC--eeEEEEE
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS--RPMRIDV 285 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~i~v~~ 285 (349)
..+|||+||++.+|+++|+++|+ +||.|++|+|+.+ .++|||||+|++.++|++|++.|||..|.| +.|+|+|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs-~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHH-HHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 35799999999999999999997 9999999998754 357999999999999999999999999965 9999999
Q ss_pred cCCCCC
Q 018927 286 ATPKKA 291 (349)
Q Consensus 286 a~~~~~ 291 (349)
++++.-
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 998753
No 250
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=4.6e-18 Score=128.20 Aligned_cols=82 Identities=27% Similarity=0.519 Sum_probs=75.7
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+|||+++++++|+++|+ .||.|.+|+|+.++ +++++|||||+|.+.++|++|++ ++..|+|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 457999999999999999999996 99999999999998 89999999999999999999997 999999999999999
Q ss_pred CCCCCC
Q 018927 287 TPKKAS 292 (349)
Q Consensus 287 ~~~~~~ 292 (349)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 877544
No 251
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=125.91 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEE-ecCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCCCCCCc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVI-RNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQ 187 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~-i~~~~~~-~~~~~g~~kg~afV~f~~~~~A~~Al~~l~--g~~~~~~~~ 187 (349)
+.+.++|||+|||+++|+++|+++|+.||. |.+|+++ .++.+|+++|||||+|.+.++|.+|++.|+ +..+ .++
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCC
Confidence 346789999999999999999999999998 9999998 788889999999999999999999999996 4777 668
Q ss_pred cccccccccCCC
Q 018927 188 PFRLNWATFSGS 199 (349)
Q Consensus 188 ~i~~~~~~~~~~ 199 (349)
.|++.|+.....
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 899999876543
No 252
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=3.3e-18 Score=133.09 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=72.6
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCee--eeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~--~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
...++|||+|||+++|+++|+++|+ .| .|. +|+|++|+. |+++|||||+|.+.++|++||+ +++..|+||.|+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4567899999999999999999996 89 677 899999987 9999999999999999999996 5779999999999
Q ss_pred EEcCCC
Q 018927 284 DVATPK 289 (349)
Q Consensus 284 ~~a~~~ 289 (349)
.++.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 253
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=128.12 Aligned_cols=87 Identities=9% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEEecCCCC---CccceEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLH---NCFSHTGQVVNVKVIRNKQTG---QSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~---~~f~~~G~i~~~~~~~~~~~g---~~kg~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
......++|||+|||+++++++|+ ++|+.||+|.+|+|++++.++ +++|||||+|.+.++|++|++.|++..|
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~- 88 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV- 88 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE-
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE-
Confidence 345567899999999999999999 999999999999999987654 5569999999999999999999999999
Q ss_pred CCCccccccccccCC
Q 018927 184 NTDQPFRLNWATFSG 198 (349)
Q Consensus 184 ~~~~~i~~~~~~~~~ 198 (349)
.++.|+|.|+..+.
T Consensus 89 -~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 -DGRTLKASLGTTKY 102 (111)
T ss_dssp -TTEEEEEESCCCCS
T ss_pred -CCEEEEEEeccccc
Confidence 67889999987654
No 254
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=2.1e-17 Score=140.55 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=72.0
Q ss_pred CCcceeccCCC-CCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 207 SDLSIFVGDLA-PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 207 ~~~~l~V~nl~-~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
++++|||+||+ +.+|+++|+++|+ .||.|.+|+|+++ .+|||||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 45799999999 8999999999997 9999999999865 379999999999999999999999999999999999
Q ss_pred cCCCC
Q 018927 286 ATPKK 290 (349)
Q Consensus 286 a~~~~ 290 (349)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97654
No 255
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-18 Score=129.88 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i-~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.+...++|||+|||+++|+++|+++|+.||.| .+|+|+.|+ +|+++|||||+|.+.++|++||+. ++..| .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEE
Confidence 45677899999999999999999999999999 889999998 999999999999999999999976 99888 66888
Q ss_pred ccccccc
Q 018927 190 RLNWATF 196 (349)
Q Consensus 190 ~~~~~~~ 196 (349)
+|.++..
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8887754
No 256
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-18 Score=120.47 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~ 194 (349)
++|||+|||+++++++|+++|+.||+|.++++++++.+|+++|||||+|.+.++|++|++.++ ..+ .++.+++.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 589999999999999999999999999999999999899999999999999999999999988 777 5566776654
No 257
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=123.20 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
..+.++|||+|||+++++++|+ ++|+.||+|.+|+|+.++.+ +|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr 80 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSK 80 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCe
Confidence 3466799999999999999999 99999999999999998754 79999999999999999999999999 678
Q ss_pred cccccccccC
Q 018927 188 PFRLNWATFS 197 (349)
Q Consensus 188 ~i~~~~~~~~ 197 (349)
.|+|.|+...
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 8999988754
No 258
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=121.59 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|.+|++ +++..+ .++.|+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEE
Confidence 34577899999999999999999999999 9999999999 689999999999999999999999 999999 667888
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.++...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 8887654
No 259
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=126.37 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC--CCCCCCCcc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQP 188 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g--~~~~~~~~~ 188 (349)
...+.++|||+|||+++||++|+++|+.||.|.+|+|+++ ||||||+|.+.++|.+|++.+++ ..+ .+++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~ 98 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQP 98 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB--TTBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCeE
Confidence 4456789999999999999999999999999999999986 49999999999999999998875 456 7789
Q ss_pred ccccccccCCCC
Q 018927 189 FRLNWATFSGSD 200 (349)
Q Consensus 189 i~~~~~~~~~~~ 200 (349)
|+|.|+......
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999998765443
No 260
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=1.2e-17 Score=138.57 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=78.8
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
...+++|||+|||+.+++++|+++|+ .||.|++|.|+.++ ++.++|||||+|.+.++|.+||+.||+..|+|+.|+|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999997 99999999999998 89999999999999999999999999999999999999
Q ss_pred EcCCCC
Q 018927 285 VATPKK 290 (349)
Q Consensus 285 ~a~~~~ 290 (349)
||....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 998754
No 261
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.8e-18 Score=129.95 Aligned_cols=82 Identities=20% Similarity=0.379 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|++|+ .|++..| .++.|+|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 98 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIV 98 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEE
Confidence 346689999999999999999999999999999999999989999999999999999999999 9999999 6678888
Q ss_pred ccccc
Q 018927 192 NWATF 196 (349)
Q Consensus 192 ~~~~~ 196 (349)
.|+..
T Consensus 99 ~~a~~ 103 (114)
T 2cq4_A 99 QASQA 103 (114)
T ss_dssp EEHHH
T ss_pred EecCC
Confidence 88764
No 262
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.1e-17 Score=119.86 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|++.|++..+.+.++.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998865 4899999999999999999999999964478899
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+...
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998754
No 263
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=126.99 Aligned_cols=85 Identities=22% Similarity=0.432 Sum_probs=76.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.......++|||+|||.++|+++|+++|+.||+|.+|+++.++ +.++|||||+|.+.++|++|++.|+|..+ .++.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~ 98 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV--EGRK 98 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEE
Confidence 3455678999999999999999999999999999999999985 35899999999999999999999999998 6788
Q ss_pred ccccccccC
Q 018927 189 FRLNWATFS 197 (349)
Q Consensus 189 i~~~~~~~~ 197 (349)
|++.|+..+
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 888887643
No 264
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=121.35 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+|||+++|+++|+++|+ .||.|.+| +.++.+++ ||||+|.+.++|.+||+ ||+..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFL-AFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGG-GTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456899999999999999999996 99999987 66766655 99999999999999998 9999999999999999
Q ss_pred CCCCCC
Q 018927 287 TPKKAS 292 (349)
Q Consensus 287 ~~~~~~ 292 (349)
.++...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 876654
No 265
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.5e-18 Score=125.13 Aligned_cols=79 Identities=24% Similarity=0.456 Sum_probs=72.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
++|||+|||+++++++|+++|+.||+|.++++++++.+|+++|||||+|.+.+ |.+|++.|++..+ .++.|++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 58999999999999999999999999999999999989999999999999999 9999999999999 56788888876
Q ss_pred cC
Q 018927 196 FS 197 (349)
Q Consensus 196 ~~ 197 (349)
..
T Consensus 79 ~~ 80 (90)
T 2ki2_A 79 PK 80 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 266
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=7.9e-17 Score=144.02 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=75.5
Q ss_pred cCCCcceeccCCCCCCCHHHHH----HHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCee
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~----~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 280 (349)
..++++|||+|||+++|+++|+ ++|+ .||.|.+|+|++ +++++|||||+|.+.++|.+||+.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFS-QFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 4567899999999999999977 8996 999999999885 5789999999999999999999999999999999
Q ss_pred EEEEEcCCCC
Q 018927 281 MRIDVATPKK 290 (349)
Q Consensus 281 i~v~~a~~~~ 290 (349)
|+|.|++.+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997765
No 267
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=5.1e-17 Score=126.30 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=70.3
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceE-EEEEeCCHHHHHHHHHHhCCeEeCC--eeEEEEE
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY-GFVRFGDENERSRAMTEMNGVYCSS--RPMRIDV 285 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g--~~i~v~~ 285 (349)
.+|||+||++.+|+++|+++|+ +||.|.+|+|+.+ .+|| |||+|.+.++|++|++.|||..|.| +.|+|.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs-~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHT-TSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHh-CcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 4688999999999999999997 9999999988864 2577 9999999999999999999999988 9999999
Q ss_pred cCCCCC
Q 018927 286 ATPKKA 291 (349)
Q Consensus 286 a~~~~~ 291 (349)
++++.-
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 998753
No 268
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=123.86 Aligned_cols=83 Identities=31% Similarity=0.427 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.| +++.+ .+++++|||||+|.+.++|++|++.|++..| .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEE
Confidence 45678999999999999999999999999977 56666 5899999999999999999999999999998 578899
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
|.|+.....
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 998876543
No 269
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=3.6e-17 Score=133.43 Aligned_cols=86 Identities=21% Similarity=0.417 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 143 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELR 143 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999998 678899
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
|.|+....
T Consensus 144 v~~a~~~~ 151 (158)
T 2kn4_A 144 VQMARYGR 151 (158)
T ss_dssp EEEECCSS
T ss_pred EEECCCCC
Confidence 99987653
No 270
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=127.97 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=71.4
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
..++|||+|||+++|+++|+++|+ .||.|.+|.|+. ++|||||+|.+.++|++||+.|||..|+|+.|+|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFS-RFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456999999999999999999997 999999998863 5789999999999999999999999999999999999
Q ss_pred CCCCC
Q 018927 287 TPKKA 291 (349)
Q Consensus 287 ~~~~~ 291 (349)
....-
T Consensus 82 ~~~~~ 86 (111)
T 1whx_A 82 PIGVF 86 (111)
T ss_dssp ETTTT
T ss_pred CCCcc
Confidence 87543
No 271
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.7e-17 Score=121.44 Aligned_cols=80 Identities=20% Similarity=0.356 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.||+|.+|++.++ +|||||+|.+.++|++|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l 81 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGKQL 81 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTBCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCceE
Confidence 34567789999999999999999999999999999999865 48999999999999999999999999 56888
Q ss_pred cccccccC
Q 018927 190 RLNWATFS 197 (349)
Q Consensus 190 ~~~~~~~~ 197 (349)
++.|+...
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpj_A 82 RVRFACHS 89 (99)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 88887754
No 272
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=126.69 Aligned_cols=81 Identities=12% Similarity=0.325 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
....++|||+|||+++++++|+ ++|+.||+|.+|.+.+ +++++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGN 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCC
Confidence 3457899999999999999876 6999999999987753 678999999999999999999999999999 567
Q ss_pred cccccccccC
Q 018927 188 PFRLNWATFS 197 (349)
Q Consensus 188 ~i~~~~~~~~ 197 (349)
.|+|.|+...
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 8999988754
No 273
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=3.2e-17 Score=135.61 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=75.0
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCC--CcceEEEEEeCCHHHHHHHHHHhCCeEeC---CeeE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG--RTKGYGFVRFGDENERSRAMTEMNGVYCS---SRPM 281 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~--~~~g~afV~F~~~~~A~~A~~~l~g~~~~---g~~i 281 (349)
..++|||+|||+++|+++|+++|+ .||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.||+..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 356899999999999999999996 99999999999998877 89999999999999999999999998775 6788
Q ss_pred EEEEcCCCC
Q 018927 282 RIDVATPKK 290 (349)
Q Consensus 282 ~v~~a~~~~ 290 (349)
.+.++..+.
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888876644
No 274
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=1.4e-17 Score=128.99 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~---i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++||+ +++..| .++
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GHR 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCe
Confidence 3456789999999999999999999999998 89999999985 9999999999999999999998 899888 567
Q ss_pred cccccccc
Q 018927 188 PFRLNWAT 195 (349)
Q Consensus 188 ~i~~~~~~ 195 (349)
.|+|.++.
T Consensus 89 ~i~V~~a~ 96 (118)
T 2db1_A 89 YIEVFKSH 96 (118)
T ss_dssp EEEEEEEC
T ss_pred EEEEEECC
Confidence 77777654
No 275
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=8.5e-18 Score=134.83 Aligned_cols=87 Identities=25% Similarity=0.417 Sum_probs=74.1
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEE-----EEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCe
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV-----IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i-----~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 279 (349)
..++++|||+|||+++|+++|+++|+ .||.|.++.+ +....++.++|||||+|.+.++|.+||+.|||..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34567999999999999999999996 9999987411 11124688999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCC
Q 018927 280 PMRIDVATPKKAS 292 (349)
Q Consensus 280 ~i~v~~a~~~~~~ 292 (349)
.|+|.+++++..+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999886544
No 276
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=122.07 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=72.4
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeE-EEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK-VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~-i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
...++|||+|||+++++++|+++|+ .||.|.+|+ |+.++.+ |.|||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467999999999999999999997 999999994 8877654 349999999999999999999999999999999
Q ss_pred EcCCCC
Q 018927 285 VATPKK 290 (349)
Q Consensus 285 ~a~~~~ 290 (349)
+++++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 999874
No 277
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=122.34 Aligned_cols=85 Identities=25% Similarity=0.496 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.| .+|+++.++.+++++|||||+|.+.++|++|++.|++..| .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 84 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKV 84 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 345678999999999999999999999977 3788889988999999999999999999999999999998 66889
Q ss_pred cccccccCCC
Q 018927 190 RLNWATFSGS 199 (349)
Q Consensus 190 ~~~~~~~~~~ 199 (349)
+|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999876543
No 278
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.2e-17 Score=122.58 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC---cc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD---QP 188 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~---~~ 188 (349)
....++|||+|||+++|+++|+++|+.||+|.+|+|+.+ |||||+|.+.++|++||+.|++..|.+.. +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356789999999999999999999999999999999886 89999999999999999999999985422 88
Q ss_pred ccccccccCCC
Q 018927 189 FRLNWATFSGS 199 (349)
Q Consensus 189 i~~~~~~~~~~ 199 (349)
|+|.++.....
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 89988876543
No 279
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=118.18 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=65.1
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 115 TKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 115 ~~~l~V~nLp~~~------te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.++|||+|||+.+ ++++|+++|+.||+|.++++. +.+|+++|||||+|.+.++|.+|++.|+|..+.+. +.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~-~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ-HT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS-SC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc-ee
Confidence 3789999999999 779999999999999999987 35899999999999999999999999999999543 04
Q ss_pred ccc
Q 018927 189 FRL 191 (349)
Q Consensus 189 i~~ 191 (349)
|++
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 544
No 280
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=8.3e-17 Score=139.49 Aligned_cols=80 Identities=26% Similarity=0.466 Sum_probs=74.0
Q ss_pred cCCCcceeccCCCC-CCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 205 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
..++++|||+|||+ ++++++|+++|+ .||.|.+|+|++++ +|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~-~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHH-HHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34667999999999 999999999996 99999999999874 789999999999999999999999999999999
Q ss_pred EEcCCCC
Q 018927 284 DVATPKK 290 (349)
Q Consensus 284 ~~a~~~~ 290 (349)
.+++++.
T Consensus 105 ~~a~~~~ 111 (229)
T 2adc_A 105 TLSKHQN 111 (229)
T ss_dssp ECCSCCC
T ss_pred EEecCcc
Confidence 9998763
No 281
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=128.70 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++||+. ++..| .++.|+|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V 100 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEP 100 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999987 88888 6788888
Q ss_pred cccccCCC
Q 018927 192 NWATFSGS 199 (349)
Q Consensus 192 ~~~~~~~~ 199 (349)
.|+.....
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 88876543
No 282
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3.7e-17 Score=127.78 Aligned_cols=81 Identities=15% Similarity=0.393 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
..++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|++|+ .|++..| .++.|+|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEE
Confidence 5689999999999999999999999999999999999889999999999999999999999 7999999 668888888
Q ss_pred cccC
Q 018927 194 ATFS 197 (349)
Q Consensus 194 ~~~~ 197 (349)
+...
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7644
No 283
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=125.78 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~---i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++||+ +++..+ .++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM--GQR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee--CCe
Confidence 4467889999999999999999999999988 89999999986 9999999999999999999998 899888 566
Q ss_pred cccccccc
Q 018927 188 PFRLNWAT 195 (349)
Q Consensus 188 ~i~~~~~~ 195 (349)
.|++.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 77776654
No 284
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=1e-16 Score=129.35 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
....+|||+||++.+|+++|+++|++||+|.+|+|..+. ++|||||+|.+.++|++|++.|+|..|.+.++.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 455679999999999999999999999999999987543 4689999999999999999999999997767899999
Q ss_pred ccccCC
Q 018927 193 WATFSG 198 (349)
Q Consensus 193 ~~~~~~ 198 (349)
|++.+.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998654
No 285
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=129.28 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++||+ +++..| .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~ 97 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQ 97 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEE
Confidence 34566899999999999999999999999999987777777799999999999999999999998 999999 567788
Q ss_pred ccccc
Q 018927 191 LNWAT 195 (349)
Q Consensus 191 ~~~~~ 195 (349)
|.++.
T Consensus 98 V~~a~ 102 (124)
T 1wel_A 98 VHPIT 102 (124)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 77765
No 286
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=3e-17 Score=141.90 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G--~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
..++|||+||++++|+++|+++|+.|| .|++|+|++|+.+|++||||||+|.+.++|++||+.|++..| .++.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 677999999999999999999999999 999999999999999999999999999999999999999999 5677887
Q ss_pred cccc
Q 018927 192 NWAT 195 (349)
Q Consensus 192 ~~~~ 195 (349)
.|+.
T Consensus 145 ~~a~ 148 (229)
T 3q2s_C 145 TPVN 148 (229)
T ss_dssp EECC
T ss_pred EECC
Confidence 7765
No 287
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.70 E-value=9.1e-17 Score=135.93 Aligned_cols=77 Identities=27% Similarity=0.478 Sum_probs=71.9
Q ss_pred CcceeccCCCC-CCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 208 DLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 208 ~~~l~V~nl~~-~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
+++|||+|||+ ++++++|+++|+ .||.|.+|++++++ +|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHH-TTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 46899999999 999999999997 99999999998764 789999999999999999999999999999999999
Q ss_pred CCCC
Q 018927 287 TPKK 290 (349)
Q Consensus 287 ~~~~ 290 (349)
+.+.
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8764
No 288
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=9.7e-18 Score=126.15 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++|+++|+++|+.||.|.. .++.+..+|+++|||||+|.+.++|++|++ |++..+ .++.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V 89 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKL 89 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEE
Confidence 456789999999999999999999999999888 677777789999999999999999999998 999999 5788888
Q ss_pred cccccC
Q 018927 192 NWATFS 197 (349)
Q Consensus 192 ~~~~~~ 197 (349)
.|+...
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 887654
No 289
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-17 Score=124.23 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=71.8
Q ss_pred cCCCcceec--cCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe-----C
Q 018927 205 ACSDLSIFV--GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-----S 277 (349)
Q Consensus 205 ~~~~~~l~V--~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~-----~ 277 (349)
..++++||| +||++++|+++|+++|+ +||.|.+|.|+. .||||||+|++.++|++|++.|||+.| .
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 345678999 77999999999999996 999999988763 378999999999999999999999998 6
Q ss_pred CeeEEEEEcCCCCCC
Q 018927 278 SRPMRIDVATPKKAS 292 (349)
Q Consensus 278 g~~i~v~~a~~~~~~ 292 (349)
|++|.|.|++.....
T Consensus 95 g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 95 KITLYLNFVEKVQWS 109 (114)
T ss_dssp EEECEEEEESCCCCS
T ss_pred CcEEEEEecccCccc
Confidence 999999999876544
No 290
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5e-17 Score=117.28 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=66.6
Q ss_pred CCcc-eeccCCCCCCCHHH----HHHHHhccC-CCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCee
Q 018927 207 SDLS-IFVGDLAPDVTDSI----LQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (349)
Q Consensus 207 ~~~~-l~V~nl~~~~t~~~----l~~~F~~~~-G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 280 (349)
++.+ |||+|||+++++++ |+++|+ .| |.|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~-~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSD-NCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHH-TTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHH-HcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 3445 99999999999988 558996 99 599988 23 99999999999999999999999999999
Q ss_pred EEEEEcCCCCCC
Q 018927 281 MRIDVATPKKAS 292 (349)
Q Consensus 281 i~v~~a~~~~~~ 292 (349)
|+|.||+.+..-
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999998754
No 291
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=2.4e-17 Score=130.26 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~---i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
.....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ +++..| .++
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr 115 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GHR 115 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999998 999988 567
Q ss_pred cccccccc
Q 018927 188 PFRLNWAT 195 (349)
Q Consensus 188 ~i~~~~~~ 195 (349)
.|+|.++.
T Consensus 116 ~i~V~~a~ 123 (136)
T 2hgl_A 116 YIEVFKSH 123 (136)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 77776654
No 292
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=116.56 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++|+++|+++|+.||+|.+|+++ +|||||+|.+.++|++|++.|++..+ .++.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEE
Confidence 4577899999999999999999999999999999997 48999999999999999999999988 6688888
Q ss_pred cccccCCC
Q 018927 192 NWATFSGS 199 (349)
Q Consensus 192 ~~~~~~~~ 199 (349)
.|+.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 88876543
No 293
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-17 Score=124.65 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
..+.++|||+|||+++|+++|+++|+.| .|.+|+|+.|+ +|+++|||||+|.+.++|++|| .+++..| .++.|+|
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V 87 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEV 87 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEE
Confidence 3456799999999999999999999999 89999999997 4999999999999999999999 6899988 5567776
Q ss_pred cccc
Q 018927 192 NWAT 195 (349)
Q Consensus 192 ~~~~ 195 (349)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 5543
No 294
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=5.1e-17 Score=116.20 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
.+..|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|++|++.||+..+ .+++|++++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~ 77 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAES 77 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEE
Confidence 456899999999999999999999999999999976 469999999999999999999999988 667777765
Q ss_pred c
Q 018927 194 A 194 (349)
Q Consensus 194 ~ 194 (349)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 295
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=8.5e-17 Score=132.15 Aligned_cols=87 Identities=20% Similarity=0.409 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|++..| .++.|+
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 145 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQ 145 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999999998 678899
Q ss_pred ccccccCCC
Q 018927 191 LNWATFSGS 199 (349)
Q Consensus 191 ~~~~~~~~~ 199 (349)
|.|+.....
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 988876543
No 296
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-17 Score=124.25 Aligned_cols=76 Identities=18% Similarity=0.361 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++++++|+++|+.||.|.++++.+ ++|||||+|.+.++|++|++.|++..+ .++.|++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEE
Confidence 3568999999999999999999999999999999984 459999999999999999999999999 67888888
Q ss_pred cccc
Q 018927 193 WATF 196 (349)
Q Consensus 193 ~~~~ 196 (349)
|++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8763
No 297
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=7.5e-17 Score=118.21 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=62.6
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE--eCCeeEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMR 282 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~i~ 282 (349)
..+.++|||+|||+++|+++|+++|+ .||.|.+|+|+++ +||||||+|++.++|++ |++.. ++|+.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~-~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFC-QYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 34567999999999999999999996 9999999999864 78999999999999884 45544 5699999
Q ss_pred EEEcCCCCCC
Q 018927 283 IDVATPKKAS 292 (349)
Q Consensus 283 v~~a~~~~~~ 292 (349)
|+++.++..+
T Consensus 78 v~~a~~k~~~ 87 (89)
T 3d2w_A 78 ISNAEPKHNK 87 (89)
T ss_dssp EEECC-----
T ss_pred EEEcCCCCcC
Confidence 9999987643
No 298
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=117.64 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|. +.++.+ +++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 445678999999999999999999999999996 666654 5679999999999999999999999999 567788
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+...
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8887654
No 299
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=115.97 Aligned_cols=77 Identities=22% Similarity=0.456 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh-CCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l-~g~~~~~~~~~i 189 (349)
.....++|||+|||+++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.| ++..+ .++.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TTEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEE
Confidence 4467789999999999999999999999999999999975 489999999999999999988 88888 56788
Q ss_pred cccccc
Q 018927 190 RLNWAT 195 (349)
Q Consensus 190 ~~~~~~ 195 (349)
++.|++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 888763
No 300
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=1.9e-16 Score=119.52 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=73.0
Q ss_pred CCCcceeccCCCC-----CCCHHHHHHHHhccCCCeeeeEEEEcCCC-CCcceEEEEEeCCHHHHHHHHHHhCCeEeCCe
Q 018927 206 CSDLSIFVGDLAP-----DVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (349)
Q Consensus 206 ~~~~~l~V~nl~~-----~~t~~~l~~~F~~~~G~v~~v~i~~d~~~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 279 (349)
.++++|+|.||.. +-++++|+++|+ +||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||..++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4567899999963 237899999996 9999999999998764 68899999999999999999999999999999
Q ss_pred eEEEEEcCC
Q 018927 280 PMRIDVATP 288 (349)
Q Consensus 280 ~i~v~~a~~ 288 (349)
.|+|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999976
No 301
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.8e-17 Score=116.52 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 117 ~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
+|||+|||+++|+++|+++|+.||+|.+++++.++.+|+++|||||+|.+.++|++|++. ++..+ .++.+++.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV--GLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB--TTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEEEE
Confidence 699999999999999999999999999999999998999999999999999999999974 88888 555565554
No 302
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=9.1e-17 Score=121.68 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 111 TNDETKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~------te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
.....++|||+|||+.+ |+++|+++|+.||.|.+|+|+ +.+|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-- 86 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-- 86 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--
Confidence 34457899999999999 789999999999999999988 35899999999999999999999999999999
Q ss_pred CCc-cccccccc
Q 018927 185 TDQ-PFRLNWAT 195 (349)
Q Consensus 185 ~~~-~i~~~~~~ 195 (349)
.++ .|++.|+.
T Consensus 87 ~g~~~l~V~~a~ 98 (105)
T 2nlw_A 87 DKQHTFRVNLFT 98 (105)
T ss_dssp STTCEEEEECSC
T ss_pred CCCceEEEEEcc
Confidence 556 78888875
No 303
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1e-16 Score=121.94 Aligned_cols=78 Identities=21% Similarity=0.403 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 95 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPL 95 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 345677899999999999999999999999999999998 48999999999999999999999999 67888
Q ss_pred cccccccC
Q 018927 190 RLNWATFS 197 (349)
Q Consensus 190 ~~~~~~~~ 197 (349)
+|.|+...
T Consensus 96 ~V~~a~~~ 103 (108)
T 2jvo_A 96 EVVYSKLP 103 (108)
T ss_dssp EEESCSCC
T ss_pred EEEEecCC
Confidence 98888754
No 304
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.7e-17 Score=123.10 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
....++|||+|||++ +|+++|+++|+.||+|.+|+|+++ ||||||+|.+.++|.+|++.|++..+...++.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 999999999999999999999754 4999999999999999999887644333778899
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9988644
No 305
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=1.8e-17 Score=137.38 Aligned_cols=84 Identities=18% Similarity=0.469 Sum_probs=73.5
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||.++|+++|+++|. .||.+.. .++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 44678999999999999999999997 8998776 34445567889999999999999999999 699999999999999
Q ss_pred EcCCCCC
Q 018927 285 VATPKKA 291 (349)
Q Consensus 285 ~a~~~~~ 291 (349)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987643
No 306
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.7e-16 Score=121.72 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=67.9
Q ss_pred ceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceE-EEEEeCCHHHHHHHHHHhCCeEeCC--eeEEEEEc
Q 018927 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY-GFVRFGDENERSRAMTEMNGVYCSS--RPMRIDVA 286 (349)
Q Consensus 210 ~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g--~~i~v~~a 286 (349)
.|||+||++.+|+++|+++|+ .||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs-~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCN-PVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHT-TTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 478999999999999999997 9999999998642 286 9999999999999999999999987 69999999
Q ss_pred CCCCC
Q 018927 287 TPKKA 291 (349)
Q Consensus 287 ~~~~~ 291 (349)
+++.-
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 98753
No 307
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=2.1e-17 Score=135.83 Aligned_cols=80 Identities=28% Similarity=0.517 Sum_probs=74.2
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
++++|||+|||+++|+++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++. +..++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 356899999999999999999996 999999999999999999999999999999999999974 67899999999998
Q ss_pred CCC
Q 018927 287 TPK 289 (349)
Q Consensus 287 ~~~ 289 (349)
.++
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 764
No 308
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.1e-17 Score=125.18 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++|+++|+++|+.||.|.++.+..+..+|+++|||||+|.+.++|++|++.|++..+ .++.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 45678999999999999999999999999985443333333788999999999999999999999999999 6788999
Q ss_pred cccccCCC
Q 018927 192 NWATFSGS 199 (349)
Q Consensus 192 ~~~~~~~~ 199 (349)
.|+.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 88876543
No 309
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=4.7e-17 Score=123.90 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=70.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.+...++|||+|||+++|+++|+++|+.|| +|..+++..+ +++|||||+|.+.++|++|++.|+|..+ .++.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i 97 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF--RGSVI 97 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 345678999999999999999999999999 8999988543 4779999999999999999999999999 67788
Q ss_pred cccccccC
Q 018927 190 RLNWATFS 197 (349)
Q Consensus 190 ~~~~~~~~ 197 (349)
+|.++...
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 88887644
No 310
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.9e-17 Score=118.62 Aligned_cols=79 Identities=27% Similarity=0.403 Sum_probs=67.4
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
.+++|||+|||+++|+++|+++|+ .||.|.+|+|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFS-QYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHST-TTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 457999999999999999999996 9999999999854 689999999999999765321 35568999999999
Q ss_pred CCCCCCC
Q 018927 287 TPKKASG 293 (349)
Q Consensus 287 ~~~~~~~ 293 (349)
+++....
T Consensus 76 ~~~~~~~ 82 (88)
T 1wf0_A 76 EPKHNSN 82 (88)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876653
No 311
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=4.4e-17 Score=129.15 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++||++|+++|+.|| |++|+|+.|+. |+++|||||+|.+.++|++|| .+++..| .++.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~ 116 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIE 116 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEE
Confidence 445678999999999999999999999999 67999999985 999999999999999999999 7899988 556777
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.++...
T Consensus 117 V~~a~~~ 123 (139)
T 2hgn_A 117 LFLNSTT 123 (139)
T ss_dssp CEECCCS
T ss_pred EEECCCC
Confidence 7666543
No 312
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=2.8e-16 Score=118.57 Aligned_cols=78 Identities=22% Similarity=0.426 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|++|++.|++..| .++.|+|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 77 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL--EGENIEI 77 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEE
Confidence 35678999999999999999999999999999999873 6999999999999999999999998 5788999
Q ss_pred cccccCCC
Q 018927 192 NWATFSGS 199 (349)
Q Consensus 192 ~~~~~~~~ 199 (349)
.|+.....
T Consensus 78 ~~a~~~~~ 85 (103)
T 2dgu_A 78 VFAKPPDQ 85 (103)
T ss_dssp EECCCCCC
T ss_pred EEcCCCcc
Confidence 88876544
No 313
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=1.2e-16 Score=124.19 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~--~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
.....++|||+|||+++||++|+++|+.| .|+ +|+|+.|+. |+++|||||+|.+.++|++||+. ++..| .++.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l--~gR~ 112 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI--GHRY 112 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB--TTBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE--CCEE
Confidence 34567899999999999999999999999 677 999999986 99999999999999999999974 77777 5667
Q ss_pred ccccccc
Q 018927 189 FRLNWAT 195 (349)
Q Consensus 189 i~~~~~~ 195 (349)
|+|.++.
T Consensus 113 I~V~~a~ 119 (126)
T 2hgm_A 113 IEVFKSS 119 (126)
T ss_dssp CCCEEEC
T ss_pred EEEEECC
Confidence 7776554
No 314
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=7.1e-16 Score=119.36 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~-afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
.....|||+||++.+|+++|+++|++||.|.+|+|+.. + || |||+|.+.++|.+|++.|+|..|.+..+.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--N----GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--S----SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--C----CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 34445789999999999999999999999999999752 2 86 99999999999999999999999776688999
Q ss_pred cccccCC
Q 018927 192 NWATFSG 198 (349)
Q Consensus 192 ~~~~~~~ 198 (349)
.+++...
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9987653
No 315
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=3.2e-16 Score=131.88 Aligned_cols=122 Identities=11% Similarity=0.012 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHh--CCCCCCCCCccccccccccCCCCCc--cccCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEE
Q 018927 166 SRAAAEKVLQSY--SGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV 241 (349)
Q Consensus 166 ~~~~A~~Al~~l--~g~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i 241 (349)
+.+.+..|++.. ....+...+..++.....+.+.... ......++|||+|||+++|+++|+++|+ .||.|.+|+|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHT-TSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHh-cCCCEEEEEE
Confidence 677788888766 3333433333333221111100000 0223457899999999999999999997 9999999999
Q ss_pred EEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCC
Q 018927 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (349)
Q Consensus 242 ~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 290 (349)
+++.. +.++|||||+|++.++|.+|++.++ ..|+|+.|+|.+++.-.
T Consensus 142 ~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 142 RRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYF 188 (193)
T ss_dssp EECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC-
T ss_pred EECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHH
Confidence 99864 8999999999999999999996655 59999999999987643
No 316
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=119.52 Aligned_cols=80 Identities=21% Similarity=0.480 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++|+++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 346789999999999999999999999999999999987 49999999999999999999999998 5788999
Q ss_pred cccccCCC
Q 018927 192 NWATFSGS 199 (349)
Q Consensus 192 ~~~~~~~~ 199 (349)
.|+.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99876543
No 317
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=121.11 Aligned_cols=80 Identities=16% Similarity=0.288 Sum_probs=69.0
Q ss_pred CCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCC---CCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 206 ~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~---~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
...++|||+|||+++|+++|+++|+ .||.|. +.++.++.+ |+++|||||+|++.++|++||+.|+ .++|+.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 3467999999999999999999996 999999 888888777 7999999999999999999999984 46777777
Q ss_pred EEEcCCC
Q 018927 283 IDVATPK 289 (349)
Q Consensus 283 v~~a~~~ 289 (349)
+..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 7655443
No 318
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=7.1e-18 Score=130.27 Aligned_cols=86 Identities=19% Similarity=0.383 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~--------~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
..+.++|||+|||+++++++|+++|+.||.|.+ |+|+.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 456789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCCccccccccccCCC
Q 018927 184 NTDQPFRLNWATFSGS 199 (349)
Q Consensus 184 ~~~~~i~~~~~~~~~~ 199 (349)
.++.|+|.|+.....
T Consensus 83 -~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 -SGNPIKVSFATRRAD 97 (116)
Confidence 567888888876543
No 319
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=4e-16 Score=121.25 Aligned_cols=82 Identities=17% Similarity=0.335 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~-afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
+.....|||+||++.+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|++|++.|+|..|.+..+.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3455678899999999999999999999999999988643 477 9999999999999999999999977668999
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
++|++...
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998654
No 320
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5e-16 Score=115.54 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~-~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
....++|||+|||+++|+++|+++|+.||.|.+| .++.++.+ +.|||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQL--ENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 3457899999999999999999999999999999 48887755 3499999999999999999999999 578889
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+..+
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 8888754
No 321
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=124.04 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQV----VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i----~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~ 188 (349)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.|+ +|+++|||||+|.+.++|++||+. ++..| .++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCeE
Confidence 467899999999999999999999999975 689999985 899999999999999999999975 88877 4456
Q ss_pred cccccc
Q 018927 189 FRLNWA 194 (349)
Q Consensus 189 i~~~~~ 194 (349)
|+|..+
T Consensus 97 i~V~~a 102 (123)
T 2dha_A 97 IELFRS 102 (123)
T ss_dssp ECCEEE
T ss_pred EEEEEC
Confidence 665443
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=3.6e-16 Score=129.63 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++++++|+++|+.||+|++|+|+.++ +|.++|||||+|.+.++|.+|++.|++..| .++.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44567899999999999999999999999999999999998 999999999999999999999999999999 567888
Q ss_pred cccccc
Q 018927 191 LNWATF 196 (349)
Q Consensus 191 ~~~~~~ 196 (349)
|.|+..
T Consensus 161 V~~a~~ 166 (177)
T 2f3j_A 161 IQLVAS 166 (177)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 888764
No 323
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=3.6e-16 Score=121.32 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=71.1
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|| ++|+++|+++|+ .||.|.+|.|. .++|||||+|.+.++|.+||+.||+..|+|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~-~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHS-TTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHH-ccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345789999996 799999999996 99999999985 468999999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 018927 285 VATPKKAS 292 (349)
Q Consensus 285 ~a~~~~~~ 292 (349)
|++++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99987544
No 324
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.4e-16 Score=115.00 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=70.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHT--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~--G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
......++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|++..+ .++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 79 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL--DGS 79 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE--TTE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe--CCc
Confidence 344577899999999999999999999999 999998765 37999999999999999999999999 578
Q ss_pred cccccccccCCC
Q 018927 188 PFRLNWATFSGS 199 (349)
Q Consensus 188 ~i~~~~~~~~~~ 199 (349)
.|+|.|+.....
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpd_A 80 PIEVTLAKPVDK 91 (99)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCC
Confidence 899998876543
No 325
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=5.5e-16 Score=115.55 Aligned_cols=76 Identities=16% Similarity=0.327 Sum_probs=68.2
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.....++|||+|||+ ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 87 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN--FGKKL 87 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE--TTEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 446788999999998 99999999999999999999883 58999999999999999999999988 57888
Q ss_pred ccccccc
Q 018927 190 RLNWATF 196 (349)
Q Consensus 190 ~~~~~~~ 196 (349)
++.|+..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 8888764
No 326
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=5e-16 Score=115.54 Aligned_cols=78 Identities=15% Similarity=0.315 Sum_probs=68.0
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
...+.++|||+|||+ ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 75 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN--FGKKL 75 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC--BTTTB
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee--CCcEE
Confidence 346788999999998 99999999999999999999984 48999999999999999999999999 56778
Q ss_pred cccccccCC
Q 018927 190 RLNWATFSG 198 (349)
Q Consensus 190 ~~~~~~~~~ 198 (349)
+|.|+....
T Consensus 76 ~V~~a~~~~ 84 (96)
T 2kvi_A 76 ILEVSSSNA 84 (96)
T ss_dssp CEEEEECCC
T ss_pred EEEEcCcCC
Confidence 888876543
No 327
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=1.4e-16 Score=118.73 Aligned_cols=81 Identities=28% Similarity=0.442 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
....++|||+|||+++++++|+ ++|+.||.|.+|++.+ +|.++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDK 79 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCc
Confidence 4567899999999999999999 9999999999998874 577889999999999999999999999999 678
Q ss_pred cccccccccC
Q 018927 188 PFRLNWATFS 197 (349)
Q Consensus 188 ~i~~~~~~~~ 197 (349)
.+++.|+...
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 8999888754
No 328
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.5e-16 Score=113.17 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|++|++.|++..+ .++.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 74 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV--KGKRIN 74 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 456778999999999999999999999999999999974 4999999999999999999999998 678889
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
+.|+....
T Consensus 75 v~~a~~~~ 82 (90)
T 2dnp_A 75 VELSTKGQ 82 (90)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 98887553
No 329
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=9.3e-17 Score=120.97 Aligned_cols=81 Identities=32% Similarity=0.535 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|++|++ ++..+ .++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999997 77777 5566776
Q ss_pred cccccC
Q 018927 192 NWATFS 197 (349)
Q Consensus 192 ~~~~~~ 197 (349)
.++...
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 666543
No 330
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=112.57 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~ 191 (349)
....++|||+|||+++|+++|+++|+.||.|.+| +.++.+|+ ||||+|.+.++|.+|++ |++..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V 76 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRV 76 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEE
Confidence 3466899999999999999999999999999987 66665665 99999999999999999 999999 5678888
Q ss_pred cccccCC
Q 018927 192 NWATFSG 198 (349)
Q Consensus 192 ~~~~~~~ 198 (349)
.++....
T Consensus 77 ~~a~~~~ 83 (94)
T 2e5g_A 77 RPREQKE 83 (94)
T ss_dssp BCSCCSC
T ss_pred EECCcCC
Confidence 8776443
No 331
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=120.52 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++|+++|+++|+.||.|.+|+|.+ ++|||||+|.+.++|++|++.|+|..+ .++.|+|.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 3567999999999999999999999999999998875 348999999999999999999999999 67888998
Q ss_pred cccc
Q 018927 193 WATF 196 (349)
Q Consensus 193 ~~~~ 196 (349)
|+..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 8764
No 332
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=7.1e-16 Score=117.76 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=69.0
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 111 TNDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
.....++|||+|||++ +|+++|+++|+.||.|.+|++ ++|||||+|.+.++|++|++.|++..+ .++.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 92 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL--AGQTL 92 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 3445689999999999 999999999999999999988 359999999999999999999999999 67888
Q ss_pred cccccccC
Q 018927 190 RLNWATFS 197 (349)
Q Consensus 190 ~~~~~~~~ 197 (349)
+|.|+...
T Consensus 93 ~V~~a~~~ 100 (110)
T 1wf1_A 93 DINMAGEP 100 (110)
T ss_dssp CEEESCCC
T ss_pred EEEECCCC
Confidence 88888644
No 333
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=114.31 Aligned_cols=78 Identities=13% Similarity=0.282 Sum_probs=70.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 75 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEF--QGKRMH 75 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCee--CCcEEE
Confidence 456778999999999999999999999999999999974 4999999999999999999999999 678899
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
+.|+....
T Consensus 76 V~~a~~~~ 83 (92)
T 2dgt_A 76 VQLSTSRL 83 (92)
T ss_dssp EEESSCCC
T ss_pred EEEccCCC
Confidence 98887553
No 334
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=3.4e-16 Score=114.19 Aligned_cols=71 Identities=21% Similarity=0.471 Sum_probs=65.4
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccC----C-------CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~----G-------~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (349)
..++|||+|||+++++++|+++|+ .| | .|.++++.++ +|||||+|.+.++|.+|+ .||+..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~-~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457999999999999999999997 89 8 8999988744 789999999999999999 999999
Q ss_pred eCCeeEEEEE
Q 018927 276 CSSRPMRIDV 285 (349)
Q Consensus 276 ~~g~~i~v~~ 285 (349)
|+|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 335
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=8.4e-16 Score=124.17 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|.+|+++++ ++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 141 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL--CGCRVR 141 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 4567789999999999999999999999999999999886 469999999999999999999999998 678888
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
|.|+...
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8887654
No 336
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.9e-16 Score=120.84 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=66.9
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCC----HHH----HHHHHH--HhCCCC
Q 018927 116 KTIWIGDL----FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS----RAA----AEKVLQ--SYSGSL 181 (349)
Q Consensus 116 ~~l~V~nL----p~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~----~~~----A~~Al~--~l~g~~ 181 (349)
+.|||+|| ++.++|++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred CCCCCcccccccc
Q 018927 182 MPNTDQPFRLNWA 194 (349)
Q Consensus 182 ~~~~~~~i~~~~~ 194 (349)
| .++.|+|...
T Consensus 83 I--~Gr~irV~ln 93 (136)
T 2j8a_A 83 I--MGFKFEVILN 93 (136)
T ss_dssp E--TTEEEEEEEC
T ss_pred e--cCcEEEEEEC
Confidence 9 5566666543
No 337
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=4.4e-16 Score=114.04 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=64.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++||++|+++|++||.|.+|+|+++ +||||||+|.+.++|++ +++..+.+.++.++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999875 67999999999999983 56666666788899
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
+.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 8887754
No 338
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.4e-16 Score=118.44 Aligned_cols=64 Identities=19% Similarity=0.397 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHh
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSY 177 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~---g~~kg~afV~f~~~~~A~~Al~~l 177 (349)
...++|||+|||+++|+++|+++|+.||+|. +.++.++.+ |+++|||||+|.+.++|++|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4678999999999999999999999999999 888888766 799999999999999999999988
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=111.84 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=69.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccc
Q 018927 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (349)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i 189 (349)
......++|||+|| ++|+++|+++|+.||+|.+|+|. +++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l 79 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQL 79 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 34457789999996 89999999999999999999985 4569999999999999999999999998 67889
Q ss_pred cccccccCCC
Q 018927 190 RLNWATFSGS 199 (349)
Q Consensus 190 ~~~~~~~~~~ 199 (349)
+|.|+.....
T Consensus 80 ~v~~a~~~~~ 89 (97)
T 1x5p_A 80 KVNIARKQPM 89 (97)
T ss_dssp EEECCSSCCC
T ss_pred EEEECCCCCC
Confidence 9999875543
No 340
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=2.5e-15 Score=128.62 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..| .++.|+|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~i~V~ 200 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL--GGQYLRVG 200 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC--SSSBCEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe--CCcEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999 67888888
Q ss_pred ccccCCC
Q 018927 193 WATFSGS 199 (349)
Q Consensus 193 ~~~~~~~ 199 (349)
|+.....
T Consensus 201 ~a~~~~~ 207 (216)
T 2qfj_A 201 KAVTPPM 207 (216)
T ss_dssp ECSSCSS
T ss_pred EecCCCC
Confidence 8876543
No 341
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.3e-16 Score=117.09 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC---CCCC
Q 018927 112 NDETKTIWI--GDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM---PNTD 186 (349)
Q Consensus 112 ~~~~~~l~V--~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~---~~~~ 186 (349)
..++++||| +||++++||++|+++|++||+|.+|.+..+ ||||||+|.+.++|++|++.|||..+ .+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 346788999 779999999999999999999999988643 59999999999999999999999876 2346
Q ss_pred ccccccccc
Q 018927 187 QPFRLNWAT 195 (349)
Q Consensus 187 ~~i~~~~~~ 195 (349)
+++.+.++.
T Consensus 96 ~~l~v~~a~ 104 (114)
T 2cq2_A 96 ITLYLNFVE 104 (114)
T ss_dssp EECEEEEES
T ss_pred cEEEEEecc
Confidence 677776655
No 342
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-15 Score=107.05 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 114 ETKT-IWIGDLFHWMDETF----LHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 114 ~~~~-l~V~nLp~~~te~~----L~~~f~~~-G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
++.+ |||+|||+++++++ |+++|+.| |+|.+| ++ |+|||.|.+.++|.+|++.|+|..+ .++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~gr 74 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FGN 74 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CCc
Confidence 4455 99999999999998 55899999 599999 34 9999999999999999999999999 789
Q ss_pred cccccccccCCC
Q 018927 188 PFRLNWATFSGS 199 (349)
Q Consensus 188 ~i~~~~~~~~~~ 199 (349)
+|++.+++....
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999886543
No 343
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-16 Score=116.85 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=70.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 44577899999999999999999999999987666 34788999999999999999999999999988 668888
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
+.|+...
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 8887654
No 344
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=1.8e-15 Score=133.61 Aligned_cols=77 Identities=29% Similarity=0.518 Sum_probs=70.5
Q ss_pred cCCCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEE
Q 018927 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (349)
....++|||+|||+++|+++|+++|+ .||.|.+|.|.+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 34567899999999999999999996 999999999864 37899999999999999999999999999999999
Q ss_pred EcCC
Q 018927 285 VATP 288 (349)
Q Consensus 285 ~a~~ 288 (349)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9863
No 345
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.2e-15 Score=113.30 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=71.5
Q ss_pred ccCCCcceeccCCCCCC-----------CHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 204 EACSDLSIFVGDLAPDV-----------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 204 ~~~~~~~l~V~nl~~~~-----------t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
...++++|+|.||.... ++++|+++|+ +||.|.+|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHH-ccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 34567899999994433 2689999996 9999999965 553 379999999999999999999999
Q ss_pred CeEeCCeeEEEEEcCCCCCC
Q 018927 273 GVYCSSRPMRIDVATPKKAS 292 (349)
Q Consensus 273 g~~~~g~~i~v~~a~~~~~~ 292 (349)
|..|+||.|+|.++.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999887644
No 346
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=113.02 Aligned_cols=79 Identities=15% Similarity=0.319 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC-CCCCCCCccc
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG-SLMPNTDQPF 189 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~-i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g-~~~~~~~~~i 189 (349)
....++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.|++ ..+ .++.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEE
Confidence 356789999999999999999999999999 6666553 358999999999999999999999 888 67889
Q ss_pred cccccccCCC
Q 018927 190 RLNWATFSGS 199 (349)
Q Consensus 190 ~~~~~~~~~~ 199 (349)
++.|+.....
T Consensus 76 ~v~~a~~~~~ 85 (93)
T 2cqh_A 76 EVDYSVSKKL 85 (93)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCccc
Confidence 9998876533
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.2e-15 Score=117.41 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=60.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
...++|||+|||+++|+++|+++|+.||+|.+|+|+.+ |||||+|.+.++|++||+.|++..|.+..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45689999999999999999999999999999999876 89999999999999999999999995543
No 348
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=8.6e-16 Score=112.34 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++++++|+++|+.| .|.++++. +++|||||+|.+.++|++|++.|++..+ .++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 456899999999999999999999999 99999884 5679999999999999999999999998 67888988
Q ss_pred cccc
Q 018927 193 WATF 196 (349)
Q Consensus 193 ~~~~ 196 (349)
|+..
T Consensus 74 ~a~~ 77 (88)
T 1wg1_A 74 LQPT 77 (88)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8753
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=3e-15 Score=128.85 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=70.9
Q ss_pred cCCCcceeccCCCCCC---------CHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeE
Q 018927 205 ACSDLSIFVGDLAPDV---------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~~---------t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 275 (349)
....++|||+||+..+ ++++|+++|+ .||.|++|+|+. +||||||+|.+.++|+.|++.|+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHH-ccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567899999999998 7999999997 999999999984 47999999999999999999999999
Q ss_pred e------------CCeeEEEEEcCCCCCC
Q 018927 276 C------------SSRPMRIDVATPKKAS 292 (349)
Q Consensus 276 ~------------~g~~i~v~~a~~~~~~ 292 (349)
| .|+.|.|+||+++...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EeccccccccccCCCCEEEEEEccCCCCH
Confidence 9 8999999999987654
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=3.7e-16 Score=125.23 Aligned_cols=85 Identities=20% Similarity=0.334 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEE--E---EecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVK--V---IRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~--~---~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
....++|||+|||+++|+++|+++|+.||.|..+. + ++...+|+++|||||+|.+.++|.+|++.|+|..+ .+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CC
Confidence 35678999999999999999999999999987641 1 11123788999999999999999999999999999 67
Q ss_pred ccccccccccCC
Q 018927 187 QPFRLNWATFSG 198 (349)
Q Consensus 187 ~~i~~~~~~~~~ 198 (349)
+.|+|.|+....
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 889999887543
No 351
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=3.2e-15 Score=123.24 Aligned_cols=80 Identities=18% Similarity=0.452 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++|+++|+++|+.||.|.++++.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|++.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 169 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL--GDKKLLVQ 169 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 3478999999999999999999999999999999999988999999999999999999999999999999 56888887
Q ss_pred cc
Q 018927 193 WA 194 (349)
Q Consensus 193 ~~ 194 (349)
|+
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.59 E-value=3.1e-15 Score=112.85 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=70.8
Q ss_pred CCcceeccCC--CCCCC--------HHHHHHHHhccCCCeeeeEEEEcCCC--CCcceEEEEEeCCHHHHHHHHHHhCCe
Q 018927 207 SDLSIFVGDL--APDVT--------DSILQETFSSKYPSVKGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGV 274 (349)
Q Consensus 207 ~~~~l~V~nl--~~~~t--------~~~l~~~F~~~~G~v~~v~i~~d~~~--~~~~g~afV~F~~~~~A~~A~~~l~g~ 274 (349)
++++|.|.|+ +.++. +++|++.|+ +||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5668888887 33443 379999997 9999999999988764 367999999999999999999999999
Q ss_pred EeCCeeEEEEEcCCC
Q 018927 275 YCSSRPMRIDVATPK 289 (349)
Q Consensus 275 ~~~g~~i~v~~a~~~ 289 (349)
.++||.|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998653
No 353
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=3.2e-15 Score=140.98 Aligned_cols=84 Identities=17% Similarity=0.312 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+.+|+++|+++|+.||.|+.|+|+.++.+|.++|||||+|.+.++|.+||..|+|..| .++.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~ 175 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVL 175 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEE
Confidence 345668999999999999999999999999999999999998999999999999999999999999999999 667788
Q ss_pred cccccc
Q 018927 191 LNWATF 196 (349)
Q Consensus 191 ~~~~~~ 196 (349)
|.|+..
T Consensus 176 V~~a~~ 181 (437)
T 3pgw_S 176 VDVERG 181 (437)
T ss_pred EEEeCC
Confidence 888764
No 354
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=6.2e-15 Score=124.40 Aligned_cols=85 Identities=18% Similarity=0.455 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|||+++++++|+++|+.||.|.++++..++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 110 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 187 (198)
T 2yh0_A 110 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL--GDKKLL 187 (198)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 346778999999999999999999999999999999999988999999999999999999999999999999 678899
Q ss_pred ccccccC
Q 018927 191 LNWATFS 197 (349)
Q Consensus 191 ~~~~~~~ 197 (349)
+.|+.+.
T Consensus 188 v~~a~~~ 194 (198)
T 2yh0_A 188 VQRASVG 194 (198)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9888754
No 355
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=6.8e-15 Score=113.12 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCcceeccCCCC--CC---CHHHHHHHHhccCCCeeeeEEEEcCC----CCCcceEEEEEeCCHHHHHHHHHHhCCeEeC
Q 018927 207 SDLSIFVGDLAP--DV---TDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (349)
Q Consensus 207 ~~~~l~V~nl~~--~~---t~~~l~~~F~~~~G~v~~v~i~~d~~----~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 277 (349)
++++|+|.|+-. ++ .++||++.|+ +||.|.+|+|++++. +++++||+||+|.+.++|.+|++.|||..++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 567899999832 22 3689999996 999999999999865 4577899999999999999999999999999
Q ss_pred CeeEEEEEcCC
Q 018927 278 SRPMRIDVATP 288 (349)
Q Consensus 278 g~~i~v~~a~~ 288 (349)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 356
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.4e-15 Score=109.12 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccccc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~ 192 (349)
...++|||+|||+++|+++|+++|+.||+|.+|+++++ ++|||||+|.+.++|++| ++..+...++.|++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 45789999999999999999999999999999999865 569999999999999754 444555578889998
Q ss_pred ccccCCC
Q 018927 193 WATFSGS 199 (349)
Q Consensus 193 ~~~~~~~ 199 (349)
|+.....
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 8876543
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1.2e-14 Score=112.62 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCcccc
Q 018927 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~ 190 (349)
.....++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~ 104 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLK 104 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 3457789999996 69999999999999999999986 3569999999999999999999999998 678889
Q ss_pred ccccccCC
Q 018927 191 LNWATFSG 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
|.|+....
T Consensus 105 V~~a~~~~ 112 (121)
T 2bz2_A 105 VNIARKQP 112 (121)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 98887553
No 358
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=2e-15 Score=113.72 Aligned_cols=72 Identities=22% Similarity=0.441 Sum_probs=63.2
Q ss_pred ccCCCCCCCHHHHHHHH------------hccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCee
Q 018927 213 VGDLAPDVTDSILQETF------------SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (349)
Q Consensus 213 V~nl~~~~t~~~l~~~F------------~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 280 (349)
+.+|++.+++++|+++| + +||.|.+|+|+++.. ++++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45677777777666555 8 999999999998864 789999999999999999999999999999999
Q ss_pred EEEEEc
Q 018927 281 MRIDVA 286 (349)
Q Consensus 281 i~v~~a 286 (349)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=5.7e-15 Score=107.59 Aligned_cols=71 Identities=17% Similarity=0.505 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~----G-------~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~ 181 (349)
...++|||+|||+++|+++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 567899999999999999999999999 8 9999998866 499999999999999999 999999
Q ss_pred CCCCCcccccc
Q 018927 182 MPNTDQPFRLN 192 (349)
Q Consensus 182 ~~~~~~~i~~~ 192 (349)
+ .++.+++.
T Consensus 77 ~--~g~~l~V~ 85 (87)
T 2hzc_A 77 F--QGQSLKIR 85 (87)
T ss_dssp E--TTEECEEE
T ss_pred E--CCeEEEEe
Confidence 8 55666654
No 360
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.1e-14 Score=108.27 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEEecCCC-CCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 113 DETKTIWIGDLFH-----WMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 113 ~~~~~l~V~nLp~-----~~te~~L~~~f~~~G~i~~~~~~~~~~~-g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
..+++|+|.||.. +-++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||+.+ .+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CC
Confidence 5678999999962 2378999999999999999999998654 68999999999999999999999999999 66
Q ss_pred ccccccccc
Q 018927 187 QPFRLNWAT 195 (349)
Q Consensus 187 ~~i~~~~~~ 195 (349)
+.|++.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 888888765
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=3.1e-14 Score=119.63 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccc
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~ 193 (349)
..++|||+|||+++|+++|+++|+.||.|.+|+|+++. +|+++|||||+|.+.++|.+|++.++ ..+ .++.|+|.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEE
Confidence 35899999999999999999999999999999999987 69999999999999999999997654 466 667777777
Q ss_pred cc
Q 018927 194 AT 195 (349)
Q Consensus 194 ~~ 195 (349)
..
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 54
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=102.72 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCCCC
Q 018927 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (349)
Q Consensus 217 ~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~ 293 (349)
+..+++++|+++|+ +||.|.+|+|+ ++++|||||+|++.++|++|++.+++ +.|++|+|+|++++....
T Consensus 26 ~~~~te~~L~~~F~-~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQ-KYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CCSCCHHHHHHHHH-TTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCCHHHHHHHHH-hcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 35799999999997 99999999998 46799999999999999999988554 689999999999876543
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=4.6e-14 Score=121.44 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC
Q 018927 112 NDETKTIWIGDLFHWM---------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~---------te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~ 182 (349)
....++|||+||+..+ +|++|+++|+.||+|++|+|+.+ ||||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578899999999998 79999999999999999999864 49999999999999999999999998
Q ss_pred C----------CCCccccccccccC
Q 018927 183 P----------NTDQPFRLNWATFS 197 (349)
Q Consensus 183 ~----------~~~~~i~~~~~~~~ 197 (349)
. +.++.|.|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 2 25678899998754
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.5e-13 Score=103.82 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=68.6
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 018927 111 TNDETKTIWIGDLFHWMD-----------ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t-----------e~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g 179 (349)
.+..+++|+|.||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.|+|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 556789999999954332 6899999999999999966 554 3789999999999999999999999
Q ss_pred CCCCCCCccccccccccC
Q 018927 180 SLMPNTDQPFRLNWATFS 197 (349)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~ 197 (349)
..+ .++.|++.|+...
T Consensus 87 ~~~--~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWF--GGRQITAQAWDGT 102 (112)
T ss_dssp CEE--TTEECEEEECCSC
T ss_pred CEE--CCcEEEEEEeCCC
Confidence 999 6788999887654
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.41 E-value=6.2e-13 Score=101.43 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=64.7
Q ss_pred CCcceeccCCCCC----------CCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe
Q 018927 207 SDLSIFVGDLAPD----------VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (349)
Q Consensus 207 ~~~~l~V~nl~~~----------~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~ 276 (349)
++++|.|.|+=.. -.++||++.|+ +||.|.+|.|.++ ..+||+||+|.+.++|.+|++.|||..+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4557777776321 12368899996 9999999988654 2589999999999999999999999999
Q ss_pred CCeeEEEEEcCCC
Q 018927 277 SSRPMRIDVATPK 289 (349)
Q Consensus 277 ~g~~i~v~~a~~~ 289 (349)
+||.|+|.|+...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999998654
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=3.3e-13 Score=122.23 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=65.5
Q ss_pred cCCCcceeccC--CCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC---Ce
Q 018927 205 ACSDLSIFVGD--LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS---SR 279 (349)
Q Consensus 205 ~~~~~~l~V~n--l~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~---g~ 279 (349)
..++.+|||+| |++.+||++|+++|+ +||+|++|.+.. +||||||+|.+.++|++||+.|||+++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~-~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHH-TTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 45677999999 578999999999997 999999887652 4799999999999999999999999883 45
Q ss_pred --eEEEEEcC
Q 018927 280 --PMRIDVAT 287 (349)
Q Consensus 280 --~i~v~~a~ 287 (349)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 67888874
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.8e-12 Score=94.10 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=62.7
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 114 ETKTIWIGDLF-------HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 114 ~~~~l~V~nLp-------~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
..++|.|.-.. .++++++|+++|++||+|.+|+|+ ++++|||||+|.+.++|++|++.+++ + .+
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~g 79 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L--VD 79 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C--SS
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C--CC
Confidence 35677776554 458999999999999999999998 36789999999999999999987554 3 57
Q ss_pred ccccccccccCC
Q 018927 187 QPFRLNWATFSG 198 (349)
Q Consensus 187 ~~i~~~~~~~~~ 198 (349)
++|+|.|+....
T Consensus 80 ~~l~V~~a~~~~ 91 (100)
T 2d9o_A 80 NPLKISWLEGQP 91 (100)
T ss_dssp SBCEEECSSCCC
T ss_pred CeEEEEEccCCC
Confidence 889999987554
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=5.7e-13 Score=100.35 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=68.8
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEEEecCCC--CCccceEEEEeCCHHHHHHHHHHhCCC
Q 018927 113 DETKTIWIGDL--FHWMD--------ETFLHNCFSHTGQVVNVKVIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (349)
Q Consensus 113 ~~~~~l~V~nL--p~~~t--------e~~L~~~f~~~G~i~~~~~~~~~~~--g~~kg~afV~f~~~~~A~~Al~~l~g~ 180 (349)
.+++.|.|.|+ +.++. +++|++.|++||.|.+|+|.+++.+ ++++|++||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36789999998 33443 3689999999999999999988754 468899999999999999999999999
Q ss_pred CCCCCCccccccccc
Q 018927 181 LMPNTDQPFRLNWAT 195 (349)
Q Consensus 181 ~~~~~~~~i~~~~~~ 195 (349)
.+ .++.|++.+..
T Consensus 83 ~f--~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KF--ANRVVVTKYCD 95 (105)
T ss_dssp EE--TTEECEEEEEC
T ss_pred Ee--CCCEEEEEEeC
Confidence 99 67888887754
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=1.2e-13 Score=104.02 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=61.5
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 120 IGDLFHWMDETFLHNCF------------SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 120 V~nLp~~~te~~L~~~f------------~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
+.+|++.+++++|++.| ++||+|.+|+|+++. +++++|||||+|.+.++|.+|++.|||+.+ .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCE
Confidence 45677777777777666 999999999999887 589999999999999999999999999999 667
Q ss_pred ccccccc
Q 018927 188 PFRLNWA 194 (349)
Q Consensus 188 ~i~~~~~ 194 (349)
.|++.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 7877764
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=9.8e-13 Score=101.01 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHhhccCCeEEEEEEecCC----CCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 114 ETKTIWIGDLFH--W---MDETFLHNCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 114 ~~~~l~V~nLp~--~---~te~~L~~~f~~~G~i~~~~~~~~~~----~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
++++|+|.|+-. + --+++|++.|++||+|.+|+|++++. +++++|++||+|.+.++|.+|++.|||+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 678999999942 2 23789999999999999999999864 467889999999999999999999999999
Q ss_pred CCccccccccc
Q 018927 185 TDQPFRLNWAT 195 (349)
Q Consensus 185 ~~~~i~~~~~~ 195 (349)
.++.|++.+..
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 67888877654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=2.3e-12 Score=116.69 Aligned_cols=79 Identities=13% Similarity=0.236 Sum_probs=65.3
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCC-C--C
Q 018927 111 TNDETKTIWIGD--LFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP-N--T 185 (349)
Q Consensus 111 ~~~~~~~l~V~n--Lp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~-~--~ 185 (349)
.+.++++|||+| |++.+||++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.|||..+. . .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356788999999 578999999999999999999987754 4599999999999999999999999873 2 2
Q ss_pred Cccccccccc
Q 018927 186 DQPFRLNWAT 195 (349)
Q Consensus 186 ~~~i~~~~~~ 195 (349)
...+.+.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 2256666653
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-11 Score=87.84 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=61.4
Q ss_pred CCcceeccCCC----CCCCH----HHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCC
Q 018927 207 SDLSIFVGDLA----PDVTD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (349)
Q Consensus 207 ~~~~l~V~nl~----~~~t~----~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 278 (349)
+..||+|.-++ .++-+ .+|.+.|+ .||+|..++|+.|+ +||+|.+.++|.+||+ |||..++|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFA-SFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHH-TTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHH-hCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 44577776655 23333 67899997 99999999999863 8999999999999997 99999999
Q ss_pred eeEEEEEcCCC
Q 018927 279 RPMRIDVATPK 289 (349)
Q Consensus 279 ~~i~v~~a~~~ 289 (349)
|.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999875
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=6e-11 Score=90.51 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=68.0
Q ss_pred cCCCcceeccCCCCC-CCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CeEeCCee
Q 018927 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD-ENERSRAMTEMN--GVYCSSRP 280 (349)
Q Consensus 205 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~-~~~A~~A~~~l~--g~~~~g~~ 280 (349)
...+..|+|+||++. +++++|+++|+ .||+|.+|.+.++.. .|||+|.+ .++|..|++.|+ +..|+|..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~-~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFS-NHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTC-SSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHH-hcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 446779999999999 99999999997 899999999988754 59999999 899999999995 78899999
Q ss_pred EEEEEcCC
Q 018927 281 MRIDVATP 288 (349)
Q Consensus 281 i~v~~a~~ 288 (349)
+++++..-
T Consensus 88 ~~~evL~G 95 (121)
T 1owx_A 88 VTWEVLEG 95 (121)
T ss_dssp EEEEECCH
T ss_pred EEEEECCC
Confidence 99887653
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=6.7e-11 Score=90.10 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCC
Q 018927 113 DETKTIWIGDLFHWM----------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~----------te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~ 182 (349)
..+++|.|.|+-..- -+++|++.|++||.|.+|.|.++. .+|++||+|.+.++|.+|++.|||+.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 467789999984321 135789999999999999987653 479999999999999999999999999
Q ss_pred CCCCccccccccc
Q 018927 183 PNTDQPFRLNWAT 195 (349)
Q Consensus 183 ~~~~~~i~~~~~~ 195 (349)
.++.|++.+..
T Consensus 81 --~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 --AGKMITAAYVP 91 (114)
T ss_dssp --TTEECEEEEEC
T ss_pred --CCEEEEEEEEc
Confidence 67888887764
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=9.8e-11 Score=84.04 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=61.1
Q ss_pred CCCcceeccCCCCC-----CCH----HHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe
Q 018927 206 CSDLSIFVGDLAPD-----VTD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (349)
Q Consensus 206 ~~~~~l~V~nl~~~-----~t~----~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~ 276 (349)
.+..||+|.-++.. +-+ .+|.+.|+ .||+|..++|+.|+ +||+|.+.++|.+||+ |||..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLG-SYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHH-HHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHH-HCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 35568888777632 323 56889997 89999999999873 9999999999999997 999999
Q ss_pred CCeeEEEEEcCC
Q 018927 277 SSRPMRIDVATP 288 (349)
Q Consensus 277 ~g~~i~v~~a~~ 288 (349)
+||.|+|++..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998654
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.06 E-value=2.9e-10 Score=97.58 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHhccCCCeeeeEEEEcCC----CCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCC
Q 018927 219 DVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (349)
Q Consensus 219 ~~t~~~l~~~F~~~~G~v~~v~i~~d~~----~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 288 (349)
+-.+++|++.|+ +||.|.++.|+++.. +++++|++||+|.+.++|.+|++.|||..++||.|+|.+...
T Consensus 140 ~e~~~dl~~e~~-~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHT-TTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHH-ccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 346789999997 999999999996544 458999999999999999999999999999999999999764
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=6.1e-10 Score=84.92 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=57.0
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCC-HHHHHHHHHHhCC
Q 018927 111 TNDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS-RAAAEKVLQSYSG 179 (349)
Q Consensus 111 ~~~~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~-~~~A~~Al~~l~g 179 (349)
.-...+.|||+||+++ +++++|+++|+.||+|..|.+.++.. .|||+|.+ .++|..|++.++.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~ 78 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANN 78 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhc
Confidence 4467789999999999 99999999999999999999998873 59999999 8999999999853
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=9e-09 Score=73.53 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=55.9
Q ss_pred CCeEEEcCCC----CC-CCH---HHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 115 TKTIWIGDLF----HW-MDE---TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 115 ~~~l~V~nLp----~~-~te---~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
.-||+|.-++ .+ .++ .+|.+.|..||+|..++++.|+ +||+|.+.++|.+|++ |+|..+ .+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v--~G 75 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL--LN 75 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE--TT
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe--CC
Confidence 3467776555 22 332 5789999999999999999875 8999999999999997 999999 66
Q ss_pred ccccccccc
Q 018927 187 QPFRLNWAT 195 (349)
Q Consensus 187 ~~i~~~~~~ 195 (349)
+.++|..+.
T Consensus 76 r~LkV~lkt 84 (91)
T 2dnr_A 76 RTITIALKS 84 (91)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEeCC
Confidence 777776654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=2.8e-08 Score=85.12 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=58.6
Q ss_pred CCCHHHHHHHhhccCCeEEEEEEecCC----CCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCccccccccc
Q 018927 126 WMDETFLHNCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (349)
Q Consensus 126 ~~te~~L~~~f~~~G~i~~~~~~~~~~----~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~ 195 (349)
+-.+++|++.|++||.|.++.|.++.. +++++|++||+|.+.++|.+|++.|+|+.+ .++.|++.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--AGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--CCeEEEEEEcC
Confidence 345779999999999999999986543 458999999999999999999999999999 66777776654
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.2e-07 Score=67.91 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=64.8
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccC-----CCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKY-----PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~-----G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 281 (349)
..++|-+-|||..+++..|+.++. .+ |.++.|.+..|-. =|+|+|+|...|-+|.-.|+|.+|+||+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve-~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQ-EEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHH-HHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHh-hhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 356899999999999999999995 89 9999999987743 59999999999999998999999999999
Q ss_pred EEEE
Q 018927 282 RIDV 285 (349)
Q Consensus 282 ~v~~ 285 (349)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=5.9e-08 Score=69.63 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=56.4
Q ss_pred CCCeEEEcCCCCC------CCH---HHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 018927 114 ETKTIWIGDLFHW------MDE---TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (349)
Q Consensus 114 ~~~~l~V~nLp~~------~te---~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~ 184 (349)
+.-||+|.-++.. .++ .+|.+.|..||+|..+++..|+ +||+|.+.++|.+||+ |+|..+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v-- 82 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV-- 82 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE--
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee--
Confidence 4458888877632 332 4688999999999999999886 9999999999999998 999999
Q ss_pred CCccccccc
Q 018927 185 TDQPFRLNW 193 (349)
Q Consensus 185 ~~~~i~~~~ 193 (349)
.++.+++.+
T Consensus 83 ~Gr~L~V~~ 91 (95)
T 1ufw_A 83 KGRAVKISG 91 (95)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEec
Confidence 666676654
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=8e-07 Score=65.01 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~-----G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~ 186 (349)
.+..++|-+-|||..+++..|+.+++++ |.|+.+.+..|. +-|+|+|.|...|.+|.-.|+|..|. +
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~--g 89 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQ--G 89 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEET--T
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeec--C
Confidence 3567899999999999999999999999 999999999987 56999999999999999899999994 5
Q ss_pred ccccc
Q 018927 187 QPFRL 191 (349)
Q Consensus 187 ~~i~~ 191 (349)
+.+++
T Consensus 90 r~Lr~ 94 (117)
T 2l9w_A 90 KVIRS 94 (117)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55544
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=3.7e-05 Score=55.81 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHT-----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~-----G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
...++|.|.|||.+++++.|.-+|+.- |+|.++.... +-|+|+|.+.+.|++.|+. ..+.|. +.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~--~~ 74 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELH--GA 74 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSS--SS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-Ccceec--Ce
Confidence 456799999999999999999999872 5888887755 3599999999999999964 345553 34
Q ss_pred cccccccccCCCCCccccCCCcceeccCCCCCCC
Q 018927 188 PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVT 221 (349)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 221 (349)
.+.|.... .....+|++.+|++.++
T Consensus 75 ~LsV~P~~---------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAP---------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECC---------CCCCCCCCCCSCCCCCC
T ss_pred EEEEEcCC---------CCCcceEeeecCCCCCC
Confidence 44443222 22455899999998875
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=3.7e-05 Score=56.07 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=62.3
Q ss_pred CcceeccCCCCCC-C----HHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 208 DLSIFVGDLAPDV-T----DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 208 ~~~l~V~nl~~~~-t----~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
.++|+|.||+.++ . .+.++++|. .|+++.....++. =.-..|.|.+.++|.+|...||+..+.|+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~-~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFR-TYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHH-TTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHH-hhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 4589999998865 2 257789996 9998887766643 12478999999999999999999999999999
Q ss_pred EEEcCCCC
Q 018927 283 IDVATPKK 290 (349)
Q Consensus 283 v~~a~~~~ 290 (349)
|-|+.+-.
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99998543
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.82 E-value=0.00015 Score=51.96 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~ 178 (349)
......++| ++|.++...||.++|+.||.| .|+.+.|- -|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344456666 999999999999999999954 67777763 69999999999999998764
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.0002 Score=51.94 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=62.5
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhcc----CCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSK----YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~----~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 282 (349)
...+|.|.|||..++++.|.-+|... -|.|.++.... +-|+|+|.+.+.|++.| .-..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL-~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL-AQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH-TCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh-cCCcceecCeEEE
Confidence 45689999999999999999999531 36788877652 36999999999999988 3335788999999
Q ss_pred EEEcCCCCCCC
Q 018927 283 IDVATPKKASG 293 (349)
Q Consensus 283 v~~a~~~~~~~ 293 (349)
|.-..++...+
T Consensus 78 V~P~~~~~~~r 88 (104)
T 2dhx_A 78 LRPAPPRAPAR 88 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEcCCCCCcce
Confidence 98877776554
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.76 E-value=0.00013 Score=52.36 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=56.4
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCC--cceEEEEEeCCHHHHHHHHHHhCCeEeC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR--TKGYGFVRFGDENERSRAMTEMNGVYCS 277 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~ 277 (349)
++|.|++||+.+||+++.+.++ ....+....+...+.+.. ...-|||.|.+.+++..-.+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQ-PMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHC-SCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhc-CcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 3789999999999999999997 788887777766543322 2367999999999999999999998874
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.73 E-value=0.00012 Score=52.48 Aligned_cols=68 Identities=9% Similarity=0.085 Sum_probs=57.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ--SEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~--~kg~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
++|-|++||+.+||+++.+.+.....+.....+..+.+.+ .-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5899999999999999999999998888777766554332 2256999999999999999999998763
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=0.0002 Score=52.17 Aligned_cols=77 Identities=8% Similarity=0.015 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCC-CH----HHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCCCCCc
Q 018927 113 DETKTIWIGDLFHWM-DE----TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~-te----~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~~~~~ 187 (349)
...++|+|.||+.++ +. +.++++|..|+++......+.- .-..|.|.+.++|.+|...|++..+ .+.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f--~g~ 74 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEF--LGK 74 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEE--TTE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhcccee--cCc
Confidence 456789999998654 22 5778999999999888888765 3479999999999999999999999 556
Q ss_pred cccccccccC
Q 018927 188 PFRLNWATFS 197 (349)
Q Consensus 188 ~i~~~~~~~~ 197 (349)
.+++-++...
T Consensus 75 ~~r~YFgq~~ 84 (104)
T 1wey_A 75 EMKLYFAQTL 84 (104)
T ss_dssp ECEEECCCCS
T ss_pred eeEEEecCCC
Confidence 7888887643
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.31 E-value=0.0008 Score=48.20 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=46.6
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
..+.++| ++|.++...||.++|+ .||.| .|+++-|. .|||.|.+.+.|..|++.+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs-~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFS-AFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHT-TTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhh-ccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3446777 9999999999999997 99954 57777663 69999999999999998663
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.21 E-value=0.00071 Score=48.75 Aligned_cols=70 Identities=11% Similarity=0.179 Sum_probs=52.1
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCC--CcceEEEEEeCCHHHHHHHHHHhCCeEeC
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG--RTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~--~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 277 (349)
.+.+|.|+.||+.+||+++.+.++ ..-++..........+- ..-.-|||.|.+.++...-.+.++|..+-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLR-PLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTS-CCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhC-CcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 345899999999999999998886 55555444433322221 12256999999999999999999998873
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.15 E-value=0.0017 Score=48.67 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=57.5
Q ss_pred CCcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeC-CeeEEEEE
Q 018927 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDV 285 (349)
Q Consensus 207 ~~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~v~~ 285 (349)
..+.|.|-+.|..... .|.+.|+ .||+|.+.... ....+-.|+|.+..+|++|| ..||..|+ +-.|-|..
T Consensus 23 ~~~wVtVFGFp~~~~~-~VL~~F~-~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQASAS-YILLQFA-QYGNILKHVMS------NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGGHH-HHHHHHH-TTSCEEEEEEC------SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHHHH-HHHHHHH-hhCcEEEeccC------CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 3457889999998754 4556775 89999987752 12348999999999999999 77999998 47788888
Q ss_pred cCCC
Q 018927 286 ATPK 289 (349)
Q Consensus 286 a~~~ 289 (349)
..++
T Consensus 94 ~~d~ 97 (119)
T 1wwh_A 94 CIDK 97 (119)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 6543
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.01 E-value=0.00092 Score=48.04 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=46.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 018927 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (349)
Q Consensus 116 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~ 178 (349)
..++| ++|.++...||.++|+.||. ..|+.+.|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34566 99999999999999999994 477777763 69999999999999998764
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.92 E-value=0.0008 Score=48.46 Aligned_cols=70 Identities=7% Similarity=0.025 Sum_probs=52.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ--SEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~--~kg~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
-+-+|.|+.||+.+||+++.+.+..+-++.....+..+.+-+ .-.-|||.|.+.++.....+.++|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 346899999999999999988888765654443333222211 1245999999999999999999998763
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.77 E-value=0.0012 Score=47.36 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=45.5
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
..++| ++|.++...||.++|+ .||. ..|+++-|. .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs-~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFS-AFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTT-TSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHh-ccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 35667 9999999999999997 9994 457777662 69999999999999998774
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.70 E-value=0.0042 Score=46.51 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=52.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCCCCCC
Q 018927 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (349)
Q Consensus 112 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g~~~~ 183 (349)
....+-|.|-+.|... ...|...|+.||+|.+..... ...+-.|.|.++.+|++||. .||..+.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 3457789999999885 567888999999999887621 12689999999999999995 5888874
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.37 E-value=0.0017 Score=60.71 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~ 175 (349)
..|+|+|. .+..+++.+|.++|+.||+|.++.+.+++. -||.|||.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 44789997 799999999999999999999998887652 699999999999987764
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.02 E-value=0.0055 Score=46.53 Aligned_cols=77 Identities=12% Similarity=0.210 Sum_probs=55.5
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeee-eEEEEc--------CCCC-----CcceEEEEEeCCHHHHHHHHHHhCCe
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIID--------SNTG-----RTKGYGFVRFGDENERSRAMTEMNGV 274 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~-v~i~~d--------~~~~-----~~~g~afV~F~~~~~A~~A~~~l~g~ 274 (349)
..|.|-+.|.+.+...| +.|+ +||.|.+ +....+ +.+. ....+..|+|++..+|.+|| ..||.
T Consensus 8 ~~VtVFGFp~~~~~~VI-~~Fs-~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMANQVI-AYFQ-EFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp CEEEEECCCGGGHHHHH-HHHG-GGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred eEEEEEecCHHHHHHHH-HHHH-hhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 45778888877776666 5674 8999876 221110 0000 12457899999999999999 88999
Q ss_pred EeCCeeEEEEEcCC
Q 018927 275 YCSSRPMRIDVATP 288 (349)
Q Consensus 275 ~~~g~~i~v~~a~~ 288 (349)
.|+|..|-|...++
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999988754
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.37 E-value=0.0061 Score=57.03 Aligned_cols=55 Identities=9% Similarity=0.211 Sum_probs=40.5
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHH
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (349)
.+.|+|. .+..+++.+|.++|+ .||.|.++.+..+. | -||.|||.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~-~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLS-QFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHG-GGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHH-hcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 3579996 799999999999997 99999988776542 2 599999999999887763
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.00 E-value=0.054 Score=41.13 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=46.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEEecC--------CCC-----CccceEEEEeCCHHHHHHHHHHhCC
Q 018927 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNK--------QTG-----QSEGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 114 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~-~~~~~~~--------~~g-----~~kg~afV~f~~~~~A~~Al~~l~g 179 (349)
...-|.|-+.|.+.+ ..+.+.|++||.|.+ +.+.++. ... .......|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 445688888877654 467789999999876 2211100 000 123577999999999999995 588
Q ss_pred CCCCC
Q 018927 180 SLMPN 184 (349)
Q Consensus 180 ~~~~~ 184 (349)
..+.+
T Consensus 84 ~ii~G 88 (132)
T 3p3d_A 84 AVFNG 88 (132)
T ss_dssp CEETT
T ss_pred eEeCc
Confidence 88844
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.46 E-value=0.87 Score=43.29 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=46.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 018927 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 115 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g 179 (349)
...++|+ ++..+...+|.++|+.||.+ +|+.+.| ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 88889999999999999964 6666555 3699999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.80 E-value=1.4 Score=41.93 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=44.3
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
...++|+ ++..+...+|.++|+ .||. .+|+++.| ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs-~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFS-AFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGG-GGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHH-hcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3466665 899999999999997 9995 35665543 269999999999999998885
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=79.52 E-value=2.6 Score=28.41 Aligned_cols=61 Identities=7% Similarity=0.124 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHhccCC----CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcC
Q 018927 218 PDVTDSILQETFSSKYP----SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G----~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 287 (349)
..++..+|..++....| .|-.|.|.- .|.||+-.. +.|..+++.|++..+.|+.++|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 35666777777763333 234445432 278999874 45778899999999999999998765
No 404
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=64.26 E-value=33 Score=23.92 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=29.3
Q ss_pred CHHHHHHHhhc----cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 018927 128 DETFLHNCFSH----TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (349)
Q Consensus 128 te~~L~~~f~~----~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 177 (349)
.|..+++.+.. .| .|.++.+... ..||.||++...++...+++.+
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASES-----LKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECTT-----STTEEEEEESSHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEecc-----cCCEEEEEEecchhHHHHHHCC
Confidence 45555554443 23 3555555432 5699999999999888888644
No 405
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=61.50 E-value=16 Score=26.01 Aligned_cols=69 Identities=6% Similarity=0.048 Sum_probs=51.8
Q ss_pred cCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCCCC
Q 018927 214 GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (349)
Q Consensus 214 ~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 291 (349)
--++..+.-+||.....+.||.-.+++.. +. -..|-..+.+|-++|++.|+- .-.-+.|+|-+..++..
T Consensus 22 i~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDr-ss~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 22 LQFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDR-SIHMKSLKILLVINGST 90 (103)
T ss_dssp EEEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHH-CSSCCSEEEEEEECCCC
T ss_pred EeccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHcc-CCcccceEEEEecCCCC
Confidence 35678899999998888889987777655 32 267999999999999988763 34556677766666644
No 406
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=46.74 E-value=66 Score=22.94 Aligned_cols=48 Identities=10% Similarity=0.186 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHhccCCCeeeeEE----EEcCCCCCcceEEEEEeCCHHHHHH
Q 018927 218 PDVTDSILQETFSSKYPSVKGAKV----IIDSNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~v~i----~~d~~~~~~~g~afV~F~~~~~A~~ 266 (349)
...+..+|++.+...|+.-.++.+ .+.-..+++.|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567888888888766765333222 233334567777755 566666554
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=46.10 E-value=19 Score=26.06 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHhccCCCeeeeEEE----EcCCCCCcceEEEEEeCCHHHHHH
Q 018927 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~v~i~----~d~~~~~~~g~afV~F~~~~~A~~ 266 (349)
...+..+|++.+...|+.-.++.++ +.-..|++.|||.| |+|.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4567888888877666653333222 22234677788865 677776654
No 408
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=42.59 E-value=32 Score=23.81 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCCCccceEEEEeCC
Q 018927 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (349)
Q Consensus 141 ~i~~~~~~~~~~~g~~kg~afV~f~~ 166 (349)
+|+++++.+-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68899998887788999999999975
No 409
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.68 E-value=51 Score=22.74 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=38.9
Q ss_pred eeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHH
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~ 269 (349)
-++-.++...+..+|++.+.+-|+ .|..|..+.-+. + .--|||++..-.+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHH
Confidence 344467789999999988865566 577777765432 2 2359999988777766543
No 410
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=41.07 E-value=67 Score=22.95 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHhccCCCeeeeE----EEEcCCCCCcceEEEEEeCCHHHHHH
Q 018927 218 PDVTDSILQETFSSKYPSVKGAK----VIIDSNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~v~----i~~d~~~~~~~g~afV~F~~~~~A~~ 266 (349)
...+..+|++.+...|+.-.++. +.+.-..|++.|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56778888888875666432222 2233334677788855 667766554
No 411
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=40.54 E-value=6.6 Score=29.91 Aligned_cols=10 Identities=40% Similarity=0.315 Sum_probs=5.0
Q ss_pred hHHHHHHHHh
Q 018927 10 NAAAAAAAAV 19 (349)
Q Consensus 10 ~~a~~a~~~~ 19 (349)
+....++++.
T Consensus 107 ~~~~~~a~~~ 116 (150)
T 1qb3_A 107 EAELRAATAA 116 (150)
T ss_dssp HHHHHHHHHH
T ss_pred CCCcchhhHH
Confidence 3444556664
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.88 E-value=66 Score=22.18 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=38.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Q 018927 118 IWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (349)
Q Consensus 118 l~V~nLp~~~te~~L~~~f~~-~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 176 (349)
-|+-.+....+..+|++.++. |+ .|..|..+.-+ .|. --|||.+....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHHh
Confidence 444556788999999999987 55 66777666543 222 3499999887776655433
No 413
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=39.54 E-value=92 Score=21.49 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=46.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~g 179 (349)
...|-+-|-|+|..+-..++.-.....|---.|..+. |-|.|.|.+.++-..|+..|-.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 4567889999999988888877777777544554433 6799999999999999988643
No 414
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=39.21 E-value=18 Score=25.79 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHhccCCCeeeeEEEEcCC----CCCcceEEEEEeCCHHHHH
Q 018927 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERS 265 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~v~i~~d~~----~~~~~g~afV~F~~~~~A~ 265 (349)
...+..+|++.+...|+.-.++.++..-. .+++.|||.| |+|.+.|.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 35677788877775665534444443222 3566777755 44454443
No 415
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=38.12 E-value=37 Score=26.10 Aligned_cols=48 Identities=13% Similarity=0.347 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHhccCCCeeeeEEEEc----CCCCCcceEEEEEeCCHHHHHH
Q 018927 218 PDVTDSILQETFSSKYPSVKGAKVIID----SNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~v~i~~d----~~~~~~~g~afV~F~~~~~A~~ 266 (349)
...+..||++.+...|+.=.++.++.. -..+.+.|||.| |+|.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 467778888888755665333333322 223567788866 566766654
No 416
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=37.73 E-value=41 Score=23.96 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCCCCccceEEEEeCC
Q 018927 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (349)
Q Consensus 141 ~i~~~~~~~~~~~g~~kg~afV~f~~ 166 (349)
+|++|++.+-...|+-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68899998877779999999999975
No 417
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=36.81 E-value=44 Score=24.03 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCCCccceEEEEeCC
Q 018927 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (349)
Q Consensus 141 ~i~~~~~~~~~~~g~~kg~afV~f~~ 166 (349)
+|++|++.+-...|+-++||-|.|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57889998877789999999999975
No 418
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=35.57 E-value=1.3e+02 Score=22.60 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHhccCCCeeeeEEE----EcCCCCCcceEEEEEeCCHHHHHH
Q 018927 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSR 266 (349)
Q Consensus 218 ~~~t~~~l~~~F~~~~G~v~~v~i~----~d~~~~~~~g~afV~F~~~~~A~~ 266 (349)
...+..+|++.+...|+.-.++.++ +.-..|.+.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4678899999997677753333332 33234567788866 566766654
No 419
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=35.23 E-value=1.1e+02 Score=21.10 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=48.7
Q ss_pred CcceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCC-------eEeCCee
Q 018927 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-------VYCSSRP 280 (349)
Q Consensus 208 ~~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g-------~~~~g~~ 280 (349)
.+-|.|-|+|..+-..++.-... ..|--..|..+ .|-|.|+|.+.++-.-|+..|-+ .+|.|..
T Consensus 12 nclikiinipqgtlkaevvlavr-hlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVR-HLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHH-TTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred CcEEEEEecCCCceeeeeEEeeh-hcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 34577889999999988876664 66655555544 24699999999999999877632 3355665
Q ss_pred EEEEE
Q 018927 281 MRIDV 285 (349)
Q Consensus 281 i~v~~ 285 (349)
..|--
T Consensus 83 cdvis 87 (129)
T 4eyt_A 83 CDVIS 87 (129)
T ss_dssp EEEEC
T ss_pred eeeee
Confidence 55543
No 420
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=34.64 E-value=53 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.3
Q ss_pred CeeeeEEEEcCCCCCcceEEEEEeCC
Q 018927 235 SVKGAKVIIDSNTGRTKGYGFVRFGD 260 (349)
Q Consensus 235 ~v~~v~i~~d~~~~~~~g~afV~F~~ 260 (349)
+|++|+|..-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766668889999999985
No 421
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.67 E-value=75 Score=25.06 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=32.2
Q ss_pred ceeccCCCC---------CCCHHHHHHHH--hccCCCeeeeEEEEcCCCCCcceEEEEEeCC
Q 018927 210 SIFVGDLAP---------DVTDSILQETF--SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (349)
Q Consensus 210 ~l~V~nl~~---------~~t~~~l~~~F--~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~ 260 (349)
.+.|-|++. .....+|++.| + .|..+. |+.+.+.. .++|++.|+|.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~-~F~p~k-v~~l~~~~--Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILR-GFNPTR-VRPLWNYL--GHSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHT-TCCCSE-EEEEECSS--BEEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhc-CCCCce-eEecccCC--CCceeEEEEecC
Confidence 344557665 24457888866 7 787654 66666543 578999999977
No 422
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=30.15 E-value=1.3e+02 Score=21.03 Aligned_cols=62 Identities=6% Similarity=0.062 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEE
Q 018927 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (349)
Q Consensus 215 nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (349)
-++..+.-+||.......||.-.++....+ --.|-..+.+|-++|++.|+ ....-+.|+|-.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLD-rs~~~kSLrIlL 96 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLD-RSIHMKSLKILL 96 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHH-HCSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhc-cCccccceEEEE
Confidence 567788899998888878998888776632 26788999999999998876 333344445444
No 423
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=29.70 E-value=69 Score=22.79 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=21.3
Q ss_pred CeeeeEEEEcCCCCCcceEEEEEeCC
Q 018927 235 SVKGAKVIIDSNTGRTKGYGFVRFGD 260 (349)
Q Consensus 235 ~v~~v~i~~d~~~~~~~g~afV~F~~ 260 (349)
.|++|+|..-...|+-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766668889999999985
No 424
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.69 E-value=1.1e+02 Score=24.14 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=36.2
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hccCCeEEEEEEecCCCCCccceEEEEeCCHH-HHHHHHH
Q 018927 117 TIWIGDLFH-W--------MDETFLHNCF--SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA-AAEKVLQ 175 (349)
Q Consensus 117 ~l~V~nLp~-~--------~te~~L~~~f--~~~G~i~~~~~~~~~~~g~~kg~afV~f~~~~-~A~~Al~ 175 (349)
.+.|-|++. . .+..+|++.| ..|.++. ++.+.+. ....|++.|+|.+.. .-..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 356667765 1 3457899977 8898864 5555543 236689999996544 4444553
No 425
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=29.10 E-value=72 Score=22.89 Aligned_cols=46 Identities=9% Similarity=0.185 Sum_probs=29.7
Q ss_pred CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEe-C-CeeEEEEEcC
Q 018927 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-S-SRPMRIDVAT 287 (349)
Q Consensus 235 ~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~-~-g~~i~v~~a~ 287 (349)
.|++|+|..-...|+-++||-|+|.+. + .+++..+ . ...|.|.+-.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd~------F-vI~dIKViEg~~GlFVaMPS 52 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA------F-VIHDLRVIEGNSGLFVAMPS 52 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETTT------E-EEEEEEEEEETTEEEEECCE
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECCE------E-EEeeEEEEECCCceEEECCC
Confidence 477888876666688899999999852 2 4455443 2 3345555533
No 426
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.93 E-value=1.1e+02 Score=19.28 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=40.9
Q ss_pred cceeccCCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 018927 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (349)
Q Consensus 209 ~~l~V~nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l 271 (349)
.++.|.++.-.--...|++.+. . ..|..+.+-. ..+.+.|+|.+.++..++|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~-~-~gv~~~~v~~------~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALE-E-AGAKVEKVDL------NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHH-H-TTCEEEEECS------SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhc-c-CCcEEEEEEc------cCCEEEEEECCHHHHHHHHHHc
Confidence 4688889988888899999997 7 7788777643 2356888888666666777543
No 427
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=26.86 E-value=1.1e+02 Score=21.18 Aligned_cols=66 Identities=8% Similarity=0.117 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEcCCC
Q 018927 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (349)
Q Consensus 215 nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 289 (349)
-++..+.-++|.......||.-.++....+ --.|-..+.+|-++|++.|+ ....-+.|+|-...++
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLD-rs~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILD-RSSSMKSLRILLLSQD 84 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHH-HSTTTTEEEEEEEECS
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhc-cCccccceEEEEEcCC
Confidence 567788889998888778998887776622 25688899999999998776 3444556666666554
No 428
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=26.28 E-value=95 Score=23.35 Aligned_cols=52 Identities=6% Similarity=0.104 Sum_probs=34.5
Q ss_pred cee-ccCCCCCCCHHHHHHHHhccCC--CeeeeEEEEcC----------CCCCcceEEEEEeCCH
Q 018927 210 SIF-VGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDS----------NTGRTKGYGFVRFGDE 261 (349)
Q Consensus 210 ~l~-V~nl~~~~t~~~l~~~F~~~~G--~v~~v~i~~d~----------~~~~~~g~afV~F~~~ 261 (349)
.+. |..+...++++++++.+...++ .|.++.+-... +.....+|.|+.|.+-
T Consensus 64 ~v~~v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 64 AKILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp SCCEEEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred eEEEEEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 344 7788999999999999953454 45555432211 1133467999999863
No 429
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=32.06 E-value=14 Score=26.72 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=40.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCccceE--EEEeCCHHHHHHHHHHhCCCC
Q 018927 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYG--FVEFYSRAAAEKVLQSYSGSL 181 (349)
Q Consensus 113 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~~~~~~~~~~g~~kg~a--fV~f~~~~~A~~Al~~l~g~~ 181 (349)
...-+|-|... .++++|..+..+.+ +..+++.+...+|+.. |. |=.|.+.++|.+|++.|....
T Consensus 23 ~~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 23 SSHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 34445555444 45677888888876 4557776654444332 22 236999999999998876543
No 430
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=25.49 E-value=90 Score=23.74 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=37.3
Q ss_pred eeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHH
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (349)
-++-.++...+..+|++.+.+-|+ .|..|..+.-+. | .--|||++....+|....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIA 136 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHH
Confidence 444457788999999877754555 577777765543 2 235999998776666543
No 431
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=25.01 E-value=1e+02 Score=21.16 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=36.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHH
Q 018927 118 IWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172 (349)
Q Consensus 118 l~V~nLp~~~te~~L~~~f~~-~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~ 172 (349)
-|+-.++.+.+..+|++.++. |+ .|..|..+.-+ .| .--|||.+....+|..
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid 77 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQE 77 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHH
Confidence 345567788999999999987 55 67777666644 22 2349999987665443
No 432
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=24.76 E-value=92 Score=23.91 Aligned_cols=55 Identities=13% Similarity=0.255 Sum_probs=37.1
Q ss_pred eeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHH
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (349)
-++-.++...+..+|++.+.+-|+ .|..|..+.-+. | .--|||++....+|....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHHH
Confidence 344457778999999877754555 577777765543 2 235999998776666544
No 433
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=24.10 E-value=1.2e+02 Score=21.53 Aligned_cols=63 Identities=8% Similarity=0.113 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHhccCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEEEEc
Q 018927 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (349)
Q Consensus 215 nl~~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v~~a 286 (349)
-++..+.-++|.......||.-.++....+ --.|-..+.+|-++|++.|+ ....-+.|+|-..
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLD-rs~~mkSLRIlL~ 108 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILD-RSSSMKSLRILLL 108 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHH-HCSSCCSEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhc-cCccccceEEEEe
Confidence 567788889998888778998887776622 24688899999999998876 3333444555443
No 434
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=24.00 E-value=1.8e+02 Score=24.60 Aligned_cols=50 Identities=14% Similarity=0.340 Sum_probs=39.5
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhcc-------CCeEEEEEEecCCCCCccceEEEE
Q 018927 114 ETKTIWIGDLFH-WMDETFLHNCFSHT-------GQVVNVKVIRNKQTGQSEGYGFVE 163 (349)
Q Consensus 114 ~~~~l~V~nLp~-~~te~~L~~~f~~~-------G~i~~~~~~~~~~~g~~kg~afV~ 163 (349)
.++.+-|..+.. .++||+|...+++| .++-.+.+...+++|++--|.|.-
T Consensus 165 ATTIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~i 222 (270)
T 4a8j_B 165 ATTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIV 222 (270)
T ss_dssp CSEEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEE
T ss_pred hhheEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEE
Confidence 345677777765 77999999999987 367778888888899999888863
No 435
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=22.99 E-value=1.3e+02 Score=23.34 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=26.7
Q ss_pred CCHHHHHHHHhccCCCee---eeEEEEcCCCCCcceEEEEE
Q 018927 220 VTDSILQETFSSKYPSVK---GAKVIIDSNTGRTKGYGFVR 257 (349)
Q Consensus 220 ~t~~~l~~~F~~~~G~v~---~v~i~~d~~~~~~~g~afV~ 257 (349)
+|+++|+++-. ..|++. ++.+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~-~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAAN-KQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHH-TTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHH-hCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999995 888763 44555564478888777654
No 436
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.36 E-value=92 Score=30.35 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=41.0
Q ss_pred cCCCCCCCHHHHHHHHhc---cCCCeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 018927 214 GDLAPDVTDSILQETFSS---KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (349)
Q Consensus 214 ~nl~~~~t~~~l~~~F~~---~~G~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~ 272 (349)
+..+.+.+--||+.+|.- .+|.|+++.+-.-+. ...+.++++.|.+.++|.+++..+-
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHHH
Confidence 344555555688888842 467788887665443 3456688999999999999987663
No 437
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.69 E-value=1.5e+02 Score=22.48 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=36.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 018927 118 IWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174 (349)
Q Consensus 118 l~V~nLp~~~te~~L~~~f~~-~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al 174 (349)
-|+--+....+..+|++.++. |+ .|..|..+.-+ .|. --|||.+....+|....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~--KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NGT--KKAYVRLTADYDALDIA 136 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TSC--EEEEEEECTTCCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCc--eEEEEEeCCCCcHHHHH
Confidence 444456778899999998887 55 67777666544 222 24999998776655543
No 438
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.45 E-value=1.5e+02 Score=22.76 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=36.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 018927 118 IWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174 (349)
Q Consensus 118 l~V~nLp~~~te~~L~~~f~~-~G-~i~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al 174 (349)
-|+--+....+..+|++.++. |+ .|..|..+.-+ .|. --|||.+....+|....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g~--KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TGN--KKAYIRLAADSDSLTLA 144 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TSC--EEEEEEECSSSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCc--EEEEEEcCCCCcHHHHH
Confidence 344456778899999998887 55 66777666544 232 24999997766655543
No 439
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=21.07 E-value=1.8e+02 Score=21.08 Aligned_cols=67 Identities=12% Similarity=0.219 Sum_probs=40.9
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCccccccccccCCCCCccccCCCcceecc----CCCCC--CCHHHHHHHHhccCC
Q 018927 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVG----DLAPD--VTDSILQETFSSKYP 234 (349)
Q Consensus 161 fV~f~~~~~A~~Al~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~V~----nl~~~--~t~~~l~~~F~~~~G 234 (349)
||.+--.++...++..+-|..+.-....++++..+ +++|- .||.. ++.+||.++|. -|
T Consensus 41 ~iSaIGH~sTA~lls~Llg~~ip~NR~~i~~~~GD--------------~alv~~L~~Rl~EG~vl~~eEi~k~~e--~g 104 (114)
T 2x4i_A 41 IINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKED--------------KLYVVQISQRLEEGKILTLEEILKLYE--SG 104 (114)
T ss_dssp EEECCCCHHHHHHHHHHHCCCCCCCCCCCCBCTTC--------------EEEEEEEC-------CCCHHHHHHHHH--HT
T ss_pred eEEeeccHHHHHHHHHHhCCCccccceeEEecCCC--------------EEEEEEecccCCCCccCCHHHHHHHHH--cC
Confidence 66666778888888888887776555555543321 33332 23332 46799999994 57
Q ss_pred CeeeeEEEE
Q 018927 235 SVKGAKVII 243 (349)
Q Consensus 235 ~v~~v~i~~ 243 (349)
.|.-.++..
T Consensus 105 ~i~~~~~~~ 113 (114)
T 2x4i_A 105 KVQFFEIIV 113 (114)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEEee
Confidence 777666553
No 440
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=21.05 E-value=94 Score=20.85 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=32.2
Q ss_pred CCHHHHHHHHhccCCCe-eeeEEEEcCCCCCcceEEEEEeCCHHHHHHHHHHhCCeEeCCeeEEE
Q 018927 220 VTDSILQETFSSKYPSV-KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (349)
Q Consensus 220 ~t~~~l~~~F~~~~G~v-~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~v 283 (349)
-|+++|++++. .|-.- ..|+ .+|-..+.++..+|.+.....+|+-|.-+|
T Consensus 33 ktedelkkyle-efrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLE-EFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHH-HHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHH-HHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 47899999984 66431 1222 345566788888888766666666555444
No 441
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=20.84 E-value=89 Score=24.07 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=36.6
Q ss_pred eeccCCCCCCCHHHHHHHHhccCC-CeeeeEEEEcCCCCCcceEEEEEeCCHHHHHHHH
Q 018927 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (349)
Q Consensus 211 l~V~nl~~~~t~~~l~~~F~~~~G-~v~~v~i~~d~~~~~~~g~afV~F~~~~~A~~A~ 268 (349)
-|+-.++...+..+|++.+.+-|+ .|..|..+.-+. | .--|||++....+|....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD-G--KKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC-C--ceEEEEEcCCCCcHHHHH
Confidence 444456778888888877754455 577777765432 2 235999998877665543
No 442
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.60 E-value=84 Score=22.56 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=21.8
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCe
Q 018927 249 RTKGYGFVRFGDENERSRAMTEMNGV 274 (349)
Q Consensus 249 ~~~g~afV~F~~~~~A~~A~~~l~g~ 274 (349)
.-+||-|||=.+..+..+|++.+.+.
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 36899999999999999999766543
Done!