BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018930
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 133/254 (52%), Gaps = 5/254 (1%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+H GAWCWYK VA + G TALDL SGI+ + ++Y P
Sbjct: 13 KHFVLVHAAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLME 72
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELG 215
K+ILVGH+ GG +S A+E FP+KIS A+FL M V + G
Sbjct: 73 FMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTV-CTKAG 131
Query: 216 SAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL--- 272
SA Q + Y NG PPT + + + ++ SP +D+ALA A +RP L
Sbjct: 132 SA-VLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLA 190
Query: 273 GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFFS 332
I +++ LS ++YG+ +R FI ++ AL + + ++ +NPP+ V +I+GSDH S
Sbjct: 191 EDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDHVTMMS 250
Query: 333 KPQSLHKILVEIAQ 346
KPQ L L+ IA
Sbjct: 251 KPQQLFTTLLSIAN 264
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 133/254 (52%), Gaps = 5/254 (1%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+H GAWCWYK VA + G TALDL SGI+ + ++Y P
Sbjct: 13 KHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLME 72
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELG 215
K+ILVGH+ GG +S A+E FP+KIS A+FL M V + G
Sbjct: 73 FMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTV-CTKAG 131
Query: 216 SAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL--- 272
SA Q + Y NG PPT + + + ++ SP +D+ALA A +RP L
Sbjct: 132 SA-VLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLA 190
Query: 273 GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFFS 332
I +++ LS ++YG+ +R FI ++ AL + + ++ +NPP+ V +I+GSDH S
Sbjct: 191 EDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDHVTMMS 250
Query: 333 KPQSLHKILVEIAQ 346
KPQ L L+ IA
Sbjct: 251 KPQQLFTTLLSIAN 264
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 132/254 (51%), Gaps = 5/254 (1%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+H GAWCWYK VA + G TALDL SGI+ + ++Y P
Sbjct: 13 KHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLME 72
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELG 215
K+ILVGH+ GG +S A+E FP+KIS A+FL M V + G
Sbjct: 73 FMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTV-CTKAG 131
Query: 216 SAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL--- 272
SA Q + Y NG PPT + + + ++ SP +D+ALA A +RP L
Sbjct: 132 SA-VLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLA 190
Query: 273 GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFFS 332
I +++ LS ++YG+ +R FI ++ AL + + ++ +NPP+ V +I+GSD S
Sbjct: 191 EDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPPDEVKEIEGSDAVTMMS 250
Query: 333 KPQSLHKILVEIAQ 346
KPQ L L+ IA
Sbjct: 251 KPQQLFTTLLSIAN 264
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 129/257 (50%), Gaps = 8/257 (3%)
Query: 94 QYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPX 153
Q K FVL+HG GAW WYK LE G TA+DL +GI+ + + T +YS+P
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 154 XXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQR---PFDVF 210
KV+L+GHS GG + A+E +P+KIS A+F+ A M PF+ +
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 211 AEELGSAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPT 270
E+ + M +SQF YGN ++ P + Q M F +D+ LA RP
Sbjct: 129 NEKCPA--DMMLDSQFSTYGNPEN-PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPG 185
Query: 271 PL--GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHC 328
L + + S E+YG+ +R +I +D++ + Q+ V + V +IK +DH
Sbjct: 186 SLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADHM 245
Query: 329 PFFSKPQSLHKILVEIA 345
S+P+ + K L++I+
Sbjct: 246 GMLSQPREVXKCLLDIS 262
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 129/257 (50%), Gaps = 8/257 (3%)
Query: 94 QYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPX 153
Q K FVL+HG GAW WYK LE G TA+DL +GI+ + + T +YS+P
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 154 XXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQR---PFDVF 210
KV+L+GHS GG + A+E +P+KIS A+F+ A M PF+ +
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 211 AEELGSAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPT 270
E+ + M +SQF YGN ++ P + Q M F +D+ LA RP
Sbjct: 129 NEKCPA--DMMLDSQFSTYGNPEN-PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPG 185
Query: 271 PL--GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHC 328
L + + S E+YG+ +R +I +D++ + Q+ V + V +IK +DH
Sbjct: 186 SLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADHM 245
Query: 329 PFFSKPQSLHKILVEIA 345
S+P+ + K L++I+
Sbjct: 246 GMLSQPREVXKXLLDIS 262
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 128/257 (49%), Gaps = 10/257 (3%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+HG G W WYK LE G TALDL SG DL + TL +Y+ P
Sbjct: 5 KHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPLXE 64
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAE--E 213
KVILVGHS GG + A E +PQKI A+FL A V + E
Sbjct: 65 LXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQYNE 124
Query: 214 LGSAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPLG 273
AE ++ ++QFL YG+ ++ + F K LY SP +D+ALA + +RP+ L
Sbjct: 125 RTPAENWL-DTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSP-EDLALASSLVRPSSL- 181
Query: 274 PIMEKLS----LSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCP 329
E LS + E++G+ +R +I +D+ + + Q + +IKG+DH
Sbjct: 182 -FXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADHXA 240
Query: 330 FFSKPQSLHKILVEIAQ 346
+PQ L L+EIA
Sbjct: 241 XLCEPQKLCASLLEIAH 257
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 128/257 (49%), Gaps = 10/257 (3%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+HG G W WYK LE G TALDL SG DL + TL +Y+ P
Sbjct: 5 KHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPLXE 64
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAE--E 213
KVILVGHS GG + A E +PQKI A+FL A V + E
Sbjct: 65 LXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQYNE 124
Query: 214 LGSAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPLG 273
AE ++ ++QFL YG+ ++ + F K LY SP +D+ALA + +RP+ L
Sbjct: 125 RTPAENWL-DTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSP-EDLALASSLVRPSSL- 181
Query: 274 PIMEKLS----LSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCP 329
E LS + E++G+ +R +I +D+ + + Q + +IKG+DH
Sbjct: 182 -FXEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADHXA 240
Query: 330 FFSKPQSLHKILVEIAQ 346
+PQ L L+EIA
Sbjct: 241 XLCEPQKLCASLLEIAH 257
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 8/257 (3%)
Query: 94 QYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPX 153
Q K FVL+HG GAW WYK LE G TA+DL +GI+ + + T +YS+P
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 154 XXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQR---PFDVF 210
KV+L+GHS GG + A+E +P+KIS A+F+ A M PF+ +
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 211 AEELGSAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPT 270
E+ + M +SQF YGN + P + Q M F +D+ LA RP
Sbjct: 129 NEKCPA--DMMLDSQFSTYGN-PENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPG 185
Query: 271 PL--GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHC 328
L + + S E+YG+ +R +I +D++ + Q+ V + V +IK +D
Sbjct: 186 SLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADAM 245
Query: 329 PFFSKPQSLHKILVEIA 345
S+P+ + K L++I+
Sbjct: 246 GMLSQPREVCKCLLDIS 262
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 128/257 (49%), Gaps = 8/257 (3%)
Query: 94 QYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPX 153
Q K FVL+HG GAW WYK LE G TA+DL +GI+ + + T +YS+P
Sbjct: 3 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 62
Query: 154 XXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQR---PFDVF 210
KV+L+GHS GG + A+E +P+KIS A+F+ A M PF+ +
Sbjct: 63 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 122
Query: 211 AEELGSAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPT 270
E+ + M +SQF YGN ++ P + Q M F +D+ LA RP
Sbjct: 123 NEKCPA--DMMLDSQFSTYGNPEN-PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPG 179
Query: 271 PL--GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHC 328
L + + S E+YG+ +R +I +D++ + Q+ V + V +IK +D
Sbjct: 180 SLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADAM 239
Query: 329 PFFSKPQSLHKILVEIA 345
S+P+ + K L++I+
Sbjct: 240 GMLSQPREVCKCLLDIS 256
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 113/256 (44%), Gaps = 16/256 (6%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVL+H GAW WYK LE G TA++L SGID +V T+ EYSKP
Sbjct: 7 FVLVHNAYHGAWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSKPLIETL 66
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRP---FDVFAEE- 213
+VILVG S GG ++ A + FP KI +FL A + P D + E
Sbjct: 67 KSLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMP 126
Query: 214 --LGSAERFMQESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTP 271
LG E E++ NG + + MK + P +D LA R
Sbjct: 127 GGLGDCEFSSHETR-----NGT---MSLLKMGPKFMKARLYQNCPIEDYELAKMLHRQGS 178
Query: 272 L--GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCP 329
+ +K S E YG+ +R ++ + +D+A+ D ++ VY+I G DH
Sbjct: 179 FFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNVSKVYEIDGGDHMV 238
Query: 330 FFSKPQSLHKILVEIA 345
SKPQ L L IA
Sbjct: 239 MLSKPQKLFDSLSAIA 254
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 11/254 (4%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 6 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 65
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELGSA 217
KVI+VG S G ++ A + + KI+ +F + + P E+L +
Sbjct: 66 EKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSP-SYTVEKLLES 124
Query: 218 ERFMQESQFLIYGNGKDKPPT----GFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL- 272
+++++ + N + T GF+ ++ + F + + LA MRP L
Sbjct: 125 FPDWRDTEYFTFTNITGETITTMKLGFVLLRENL----FTKCTDGEYELAKMVMRPGSLF 180
Query: 273 -GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFF 331
+ ++ + + YG+ + +I T D+ PD Q + PP+ VY+++G DH
Sbjct: 181 QNVLAQRPKFTEKGYGSIPKVYIWTDQDKIFLPDFQRWQIANYPPDKVYQVQGGDHKLQL 240
Query: 332 SKPQSLHKILVEIA 345
+K + + IL E+A
Sbjct: 241 TKTEEVAHILQEVA 254
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 11/254 (4%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 6 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 65
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELGSA 217
KVI+VG S G ++ A + + KI+ +F + + P E+L +
Sbjct: 66 EKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSP-SYTVEKLLES 124
Query: 218 ERFMQESQFLIYGNGKDKPPT----GFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL- 272
+++++ + N + T GF+ ++ + F + + LA MRP L
Sbjct: 125 FPDWRDTEYFTFTNITGETITTMKLGFVLLRENL----FTKCTDGEYELAKMVMRPGSLF 180
Query: 273 -GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFF 331
+ ++ + + YG+ ++ +I T D+ PD Q + P+ VY+++G DH
Sbjct: 181 QNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQL 240
Query: 332 SKPQSLHKILVEIA 345
+K + + IL E+A
Sbjct: 241 TKTEEVAHILQEVA 254
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 11/254 (4%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 10 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 69
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELGSA 217
KVI+VG S G ++ A + + KI+ +F + + P E+L +
Sbjct: 70 EKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSP-SYTVEKLLES 128
Query: 218 ERFMQESQFLIYGNGKDKPPT----GFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL- 272
+++++ + N + T GF+ ++ + F + + LA MR L
Sbjct: 129 FPDWRDTEYFTFTNITGETITTMKLGFVLLRENL----FTKCTDGEYELAKMVMRKGSLF 184
Query: 273 -GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFF 331
+ ++ + + YG+ ++ +I T D+ PD Q + P+ VY+++G DH
Sbjct: 185 QNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQL 244
Query: 332 SKPQSLHKILVEIA 345
+K + + IL E+A
Sbjct: 245 TKTEEVAHILQEVA 258
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 11/254 (4%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 10 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 69
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELGSA 217
KVI+VG S G ++ A + + KI+ +F + + P E+L +
Sbjct: 70 EKLPQGEKVIIVGESXAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSP-SYTVEKLLES 128
Query: 218 ERFMQESQFLIYGNGKDKPPT----GFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL- 272
+++++ + N + T GF+ ++ + F + + LA MR L
Sbjct: 129 FPDWRDTEYFTFTNITGETITTMKLGFVLLRENL----FTKCTDGEYELAKMVMRKGSLF 184
Query: 273 -GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFF 331
+ ++ + + YG+ ++ +I T D+ PD Q + P+ VY+++G DH
Sbjct: 185 QNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQL 244
Query: 332 SKPQSLHKILVEIA 345
+K + + IL E+A
Sbjct: 245 TKTEEVAHILQEVA 258
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 11/254 (4%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 10 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 69
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELGSA 217
KVI+VG S G ++ A + + KI+ +F + + P E+L +
Sbjct: 70 EKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSP-SYTVEKLLES 128
Query: 218 ERFMQESQFLIYGNGKDKPPT----GFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL- 272
+++++ + N + T GF+ ++ + F + + LA MR L
Sbjct: 129 FPDARDTEYFTFTNITGETITTMKLGFVLLRENL----FTKCTDGEYELAKMVMRKGSLF 184
Query: 273 -GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFF 331
+ ++ + + YG+ ++ +I T D+ PD Q + P+ VY+++G DH
Sbjct: 185 QNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQL 244
Query: 332 SKPQSLHKILVEIA 345
+K + + IL E+A
Sbjct: 245 TKTEEVAHILQEVA 258
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 117/254 (46%), Gaps = 11/254 (4%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 10 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 69
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELGSA 217
KVI+VG + G ++ A + + KI+ +F + + P E+L +
Sbjct: 70 EKLPQGEKVIIVGEACAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSP-SYTVEKLLES 128
Query: 218 ERFMQESQFLIYGNGKDKPPT----GFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL- 272
+++++ + N + T GF+ ++ + F + + LA MR L
Sbjct: 129 FPDWRDTEYFTFTNITGETITTMKLGFVLLRENL----FTKCTDGEYELAKMVMRKGSLF 184
Query: 273 -GPIMEKLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFF 331
+ ++ + + YG+ ++ +I T D+ PD Q + P+ VY+++G DH
Sbjct: 185 QNVLAQRPKFTEKGYGSIKKVYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQL 244
Query: 332 SKPQSLHKILVEIA 345
+K + + IL E+A
Sbjct: 245 TKTEEVAHILQEVA 258
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 6/256 (2%)
Query: 93 IQYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKP 152
+ + FVLIH GAW W+K LE +G TALDL SG+D + + EYS+P
Sbjct: 1 MAFAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEP 60
Query: 153 XXXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAE 212
KVILVG S GG ++ A + + +KI+ A+F + + P V +
Sbjct: 61 LLTFLEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDK 120
Query: 213 ELGSAERFMQESQFLIYGNGKDKP--PTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPT 270
+ + + F +GK+ GF ++ LY P + M + + +
Sbjct: 121 LMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLREN---LYTLCGPEEYELAKMLTRKGS 177
Query: 271 PLGPIMEKLS-LSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCP 329
I+ K + E YG+ ++ ++ T D P+ Q + P+ VYK++G DH
Sbjct: 178 LFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHLL 237
Query: 330 FFSKPQSLHKILVEIA 345
+K + + +IL E+A
Sbjct: 238 QLTKTKEIAEILQEVA 253
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 6/256 (2%)
Query: 93 IQYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKP 152
+ + FVLIH GAW W+K LE +G TALDL SG+D + + EYS+P
Sbjct: 1 MAFAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEP 60
Query: 153 XXXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAE 212
KVILVG S GG ++ A + + +KI+ A+F + + P V +
Sbjct: 61 LLTFLEALPPGEKVILVGESCGGLNIAIAADKYXEKIAAAVFHNSVLPDTEHCPSYVVDK 120
Query: 213 ELGSAERFMQESQFLIYGNGKDKP--PTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPT 270
+ + + F +GK+ GF ++ LY P + M + + +
Sbjct: 121 LMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLREN---LYTLCGPEEYELAKMLTRKGS 177
Query: 271 PLGPIMEKLS-LSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCP 329
I+ K + E YG+ ++ ++ T D P+ Q + P+ VYK++G DH
Sbjct: 178 LFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKL 237
Query: 330 FFSKPQSLHKILVEIA 345
+K + + +IL E+A
Sbjct: 238 QLTKTKEIAEILQEVA 253
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 6/256 (2%)
Query: 93 IQYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKP 152
+ + FVLIH GAW W+K LE +G TALDL SG+D + + EYS+P
Sbjct: 1 MAFAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEP 60
Query: 153 XXXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAE 212
KVILVG S GG ++ A + + +KI+ A+F + + P V +
Sbjct: 61 LLTFLEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDK 120
Query: 213 ELGSAERFMQESQFLIYGNGKDKP--PTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPT 270
+ + + F +GK+ GF ++ LY P + M + + +
Sbjct: 121 LMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLREN---LYTLCGPEEYELAKMLTRKGS 177
Query: 271 PLGPIMEKLS-LSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCP 329
I+ K + E YG+ ++ ++ T D P+ Q + P+ VYK++G DH
Sbjct: 178 LFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKL 237
Query: 330 FFSKPQSLHKILVEIA 345
+K + + +IL E+A
Sbjct: 238 QLTKTKEIAEILQEVA 253
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 6/254 (2%)
Query: 95 YKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXX 154
+ FVLIH GAW W+K LE +G TALDL SG+D + + EYS+P
Sbjct: 2 FAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLL 61
Query: 155 XXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEEL 214
KVILVG S GG ++ A + + +KI+ A+F + + P V + +
Sbjct: 62 TFLEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLM 121
Query: 215 GSAERFMQESQFLIYGNGKDKP--PTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPL 272
+ + F +GK+ GF ++ LY P + M + + +
Sbjct: 122 EVFPDWKDTTYFTYTKDGKEITGLKLGFTLLREN---LYTLCGPEEYELAKMLTRKGSLF 178
Query: 273 GPIMEKLS-LSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFF 331
I+ K + E YG+ ++ ++ T D P+ Q + P+ VYK++G DH
Sbjct: 179 QNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQL 238
Query: 332 SKPQSLHKILVEIA 345
+K + + +IL E+A
Sbjct: 239 TKTKEIAEILQEVA 252
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 99 VLIHGEGFGAWCWYKTVASLEEVG--LIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXX 156
+ +HG ++ W V +E V +IP DL G G N L ++ K
Sbjct: 47 IFLHGNATSSYLWRHVVPHIEPVARCIIP---DLIGMGKSGKSGNGSYRLLDHYKYLTAW 103
Query: 157 XXXXXXXXKVILVGHSSGGA-CVSYALEHFPQKISKAIFLCATMVS 201
K+I VGH G A YA EH Q KAI ++V
Sbjct: 104 FELLNLPKKIIFVGHDWGAALAFHYAYEH--QDRIKAIVHMESVVD 147
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 99 VLIHGEGFGAWCWYKTVASLEEVG--LIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXX 156
+ +HG ++ W V +E V +IP DL G G N L ++ K
Sbjct: 48 IFLHGNATSSYLWRHVVPHIEPVARCIIP---DLIGMGKSGKSGNGSYRLLDHYKYLTAW 104
Query: 157 XXXXXXXXKVILVGHSSGGA-CVSYALEHFPQKISKAIFLCATMVS 201
K+I VGH G A YA EH Q KAI ++V
Sbjct: 105 FELLNLPKKIIFVGHDWGAALAFHYAYEH--QDRIKAIVHMESVVD 148
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 99 VLIHGEGFGAWCWYKTVASLEEVG--LIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXX 156
+ +HG ++ W V +E V +IP DL G G N L ++ K
Sbjct: 47 IFLHGNATSSYLWRHVVPHIEPVARCIIP---DLIGMGKSGKSGNGSYRLLDHYKYLTAW 103
Query: 157 XXXXXXXXKVILVGHSSGGA-CVSYALEHFPQKISKAIFLCATMVS 201
K+I VGH G A YA EH Q KAI ++V
Sbjct: 104 FELLNLPKKIIFVGHDWGAALAFHYAYEH--QDRIKAIVHMESVVD 147
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 99 VLIHGEGFGAWCWYKTVASLEEVG--LIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXX 156
+ +HG ++ W V +E V +IP DL G G N L ++ K
Sbjct: 48 IFLHGNATSSYLWRHVVPHIEPVARCIIP---DLIGMGKSGKSGNGSYRLLDHYKYLTAW 104
Query: 157 XXXXXXXXKVILVGHSSGGA-CVSYALEHFPQKISKAIFLCATMVS 201
K+I VGH G A YA EH Q KAI ++V
Sbjct: 105 FELLNLPKKIIFVGHDWGAALAFHYAYEH--QDRIKAIVHMESVVD 148
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 99 VLIHGEGFGAWCWY---KTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
VL+HG G GA W + + L E G LD G G S NS + ++ +
Sbjct: 40 VLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNS-GSRSDLNARILK 98
Query: 156 XXXXXXXXXKVILVGHSSGG-ACVSYALEHFPQKISKAIFL 195
K+ L+G+S GG + V++ L+ +P+++ K + +
Sbjct: 99 SVVDQLDIAKIHLLGNSMGGHSSVAFTLK-WPERVGKLVLM 138
>pdb|3RBJ|A Chain A, Crystal Structure Of The Lid-Mutant Of Streptococcus
Agalactiae Sortase C1
pdb|3RBJ|B Chain B, Crystal Structure Of The Lid-Mutant Of Streptococcus
Agalactiae Sortase C1
Length = 230
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 278 KLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFFSKPQSL 337
KL + +K G RF+I+ + + Q K++ + E +Y I+G DH + +
Sbjct: 140 KLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTATPYM 199
Query: 338 ---HKILVEIAQIP 348
H++LV +IP
Sbjct: 200 INSHRLLVRGKRIP 213
>pdb|3RBI|A Chain A, The Type Iii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3RBI|B Chain B, The Type Iii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3RBK|A Chain A, The Type Ii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3RBK|B Chain B, The Type Ii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3TB7|A Chain A, The Type I Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3TBE|A Chain A, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|B Chain B, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|C Chain C, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|D Chain D, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|E Chain E, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|F Chain F, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
Length = 230
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 278 KLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFFS-KPQS 336
KL + +K G RF+I+ + + Q K++ + E +Y I+G DH + P
Sbjct: 140 KLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYM 199
Query: 337 L--HKILVEIAQIP 348
+ H++LV +IP
Sbjct: 200 INSHRLLVRGKRIP 213
>pdb|4G1J|A Chain A, Sortase C1 Of Gbs Pilus Island 1
pdb|4G1J|B Chain B, Sortase C1 Of Gbs Pilus Island 1
Length = 222
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 278 KLSLSPEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHCPFFS-KPQS 336
KL + +K G RF+I+ + + Q K++ + E +Y I+G DH + P
Sbjct: 129 KLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYM 188
Query: 337 L--HKILVEIAQIP 348
+ H++LV +IP
Sbjct: 189 INSHRLLVRGKRIP 202
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 40/166 (24%)
Query: 165 KVILVGHSSGGACVSYALEHFPQKISKAIFL--CATMVSDGQRPFDVFAEELGSAERFMQ 222
+ LVGHS GG S +P I K + L AT+ D
Sbjct: 120 NIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDA------------------- 160
Query: 223 ESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPLGPIMEKLSLS 282
+ GN + G + + ++ P KD+ L +R PI E +S
Sbjct: 161 -----LEGNTQ-----GVTYNPDHIP----DRLPFKDLTLGGFYLRIAQQLPIYE---VS 203
Query: 283 PEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHC 328
+ T I DD +SP+ +K + ++ I+G+DHC
Sbjct: 204 AQF--TKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHLIEGADHC 247
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 79/188 (42%), Gaps = 27/188 (14%)
Query: 168 LVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRPFDVFAEELGSAERFMQESQFL 227
+VG S G + P+ +S A+ M + G+ L A +F +++
Sbjct: 114 VVGVSMGAFIAQELMVVAPELVSSAVL----MATRGR---------LDRARQFFNKAEAE 160
Query: 228 IYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVA----LAMASMRPTPLGPIME-KLSLS 282
+Y +G PPT + ++ + ++ + DVA +AM SM P P + +L +
Sbjct: 161 LYDSGVQLPPT--YDARARLLENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCA 218
Query: 283 PEK------YGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVY-KIKGSDHCPFFSKPQ 335
P+ + D ++P + V + P G Y +I + H FF +P+
Sbjct: 219 PQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALPNGRYLQIPDAGHLGFFERPE 278
Query: 336 SLHKILVE 343
+++ +++
Sbjct: 279 AVNTAMLK 286
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 40/166 (24%)
Query: 165 KVILVGHSSGGACVSYALEHFPQKISKAIFL--CATMVSDGQRPFDVFAEELGSAERFMQ 222
+ LVGH+ GG S +P I K + L AT+ D
Sbjct: 120 NIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDA------------------- 160
Query: 223 ESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPLGPIMEKLSLS 282
+ GN + G + + ++ P KD+ L +R PI E +S
Sbjct: 161 -----LEGNTQ-----GVTYNPDHIP----DRLPFKDLTLGGFYLRIAQQLPIYE---VS 203
Query: 283 PEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHC 328
+ T I DD +SP+ +K + ++ I+G+DHC
Sbjct: 204 AQF--TKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHLIEGADHC 247
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 40/166 (24%)
Query: 165 KVILVGHSSGGACVSYALEHFPQKISKAIFL--CATMVSDGQRPFDVFAEELGSAERFMQ 222
+ LVGH+ GG S +P I K + L AT+ D
Sbjct: 120 NIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDA------------------- 160
Query: 223 ESQFLIYGNGKDKPPTGFMFEKQQMKGLYFNQSPSKDVALAMASMRPTPLGPIMEKLSLS 282
+ GN + G + + ++ P KD+ L +R PI E +S
Sbjct: 161 -----LEGNTQ-----GVTYNPDHIP----DRLPFKDLTLGGFYLRIAQQLPIYE---VS 203
Query: 283 PEKYGTGRRFFIQTLDDRALSPDVQEKLVRENPPEGVYKIKGSDHC 328
+ T I DD +SP+ +K + ++ I+G+DHC
Sbjct: 204 AQF--TKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHLIEGADHC 247
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 100 LIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXXXX 159
L HG + W + +L + G A+D+KG G ++++ + EY
Sbjct: 44 LCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG----ESSAPPEIEEYCMEVLCKEMV 99
Query: 160 XXX----XXKVILVGHSSGGACVSYALEHFPQKI 189
+ + +GH GG V Y +P+++
Sbjct: 100 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERV 133
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 100 LIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXXXX 159
L HG + W + +L + G A+D+KG G ++++ + EY
Sbjct: 263 LCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG----ESSAPPEIEEYCMEVLCKEMV 318
Query: 160 XXX----XXKVILVGHSSGGACVSYALEHFPQKI 189
+ + +GH GG V Y +P+++
Sbjct: 319 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERV 352
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 100 LIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXXXX 159
L HG + W + +L + G A+D+KG G ++++ + EY
Sbjct: 59 LCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG----ESSAPPEIEEYCMEVLCKEMV 114
Query: 160 XXX----XXKVILVGHSSGGACVSYALEHFPQKI 189
+ + +GH GG V Y +P+++
Sbjct: 115 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERV 148
>pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
Length = 377
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 93 IQYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSK 151
I+ K++++ E W W K VA L + + A +GS + +S VT EY++
Sbjct: 148 IRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAA--NQGSSVGIS---RVTNAEEYTE 201
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 167 ILVGHSSGGA-CVSYALEHFPQKISKAIFLCAT 198
+ VGHS+GG V Y H K++KA+ + A
Sbjct: 92 VHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAV 124
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 178 VSYALEHFPQKISKAIFLCATMVSD-GQRPFDVFAEELGSAERFMQESQFLIYGNGKDKP 236
+S+ + P+ ++ IF T++ + F++ E G A F+ Y +G D P
Sbjct: 21 ISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFIA-----TYDSGLDGP 75
Query: 237 PTGFMFEKQQMKGL 250
GF+ E + GL
Sbjct: 76 AIGFLAEYDALPGL 89
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
L HG + W + +L + G A+D+KG G D++S + EY+
Sbjct: 259 LCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYG----DSSSPPEIEEYAMELLCKE 314
Query: 158 XXXXXXX----KVILVGHSSGGACVSYALEHFPQKI 189
+ + +GH G V +P+++
Sbjct: 315 MVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERV 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,597,463
Number of Sequences: 62578
Number of extensions: 369770
Number of successful extensions: 796
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 44
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)