BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018933
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/323 (65%), Positives = 254/323 (78%), Gaps = 5/323 (1%)
Query: 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
P+L E +RF +FPI Y +W+MYKKA+ASFWTAEEVDLS+D+QHWE L E+HFISHV
Sbjct: 72 PLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHV 131
Query: 87 LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
LAFFAASDGIV ENL RF ++Q+ EAR FYGFQIAMENIHSEMYSLL++TYIKD KE+
Sbjct: 132 LAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKER 191
Query: 147 HRLFNAIENIPCVAQKAKWALDWIHSSD-SFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
LFNAIE +PCV +KA WAL WI + ++ ER+V FA VEGIFFSGSF +IFWLKKRG
Sbjct: 192 EYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRG 251
Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
LMPGLTFSNELISRDEGLHCDFACL++ L + Q+V ++ AV IE +F+ EALP
Sbjct: 252 LMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPV 311
Query: 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQ 325
LIGMN +LM QYI+FVADRL++ LG + + VENPFD+ME ISL+GK NFFE+RVG+YQ
Sbjct: 312 KLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEKRVGEYQ 371
Query: 326 KASVMSSLQNGEKNFVFKLDEDF 348
+ VMS N +N F LD DF
Sbjct: 372 RMGVMS---NSTEN-SFTLDADF 390
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/323 (64%), Positives = 251/323 (77%), Gaps = 5/323 (1%)
Query: 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
P+L E +RF +FPI Y +W+MYKKA+ASFWTAEEVDLS+D+QHWE L E++FISHV
Sbjct: 14 PLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHV 73
Query: 87 LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
LAFFAASDGIV ENL RF ++QI EAR FYGFQIAMENIHSEMYSLL++TYIKD KE+
Sbjct: 74 LAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKER 133
Query: 147 HRLFNAIENIPCVAQKAKWALDWIHSSD-SFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
LFNAIE +PCV +KA WAL WI + ++ ER+V FA VEGIFFSGSF +IFWLKKRG
Sbjct: 134 EFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRG 193
Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
MPGLTFSNELISRDEGLHCDFACL++ L + ++V ++ AV IE +F+ EALP
Sbjct: 194 PMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPV 253
Query: 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQ 325
LIGMN +LM QYI+FVADRL++ LG + + VENPFD+ME ISL+GK NFFE+RVG+YQ
Sbjct: 254 KLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGEYQ 313
Query: 326 KASVMSSLQNGEKNFVFKLDEDF 348
+ VMSS F LD DF
Sbjct: 314 RMGVMSSPTENS----FTLDADF 332
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/321 (63%), Positives = 252/321 (78%), Gaps = 4/321 (1%)
Query: 28 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVL 87
IL +++ RF + PI Y +VW YKKA+ASFWTAEE+DLS D++ +E+L +EKHFI HVL
Sbjct: 33 ILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVL 92
Query: 88 AFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKH 147
AFFAASDGIVLENLA++FL +++I EA+ FY FQIA+ENIHSE YSLL++ YIKD KE+
Sbjct: 93 AFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERL 152
Query: 148 RLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLM 207
LF+AIENIP + KA WA WI+ ++SFAER+V ACVEGI FSGSFCAIFW KK+ +
Sbjct: 153 NLFHAIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKL 212
Query: 208 PGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCAL 267
GLTFSNELISRDEGLH DF CL+YSLL +L V ++V EAVE+E F+CE+LPC L
Sbjct: 213 HGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDL 272
Query: 268 IGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKA 327
IGMNS LMSQYI+FVADRLL LGC + ++ +NPF+WM+ ISLQGK NFFE+RV DYQK+
Sbjct: 273 IGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQKS 332
Query: 328 SVMSSLQNGEKNFVFKLDEDF 348
VM+ K VF L+ DF
Sbjct: 333 GVMAQ----RKEQVFSLNTDF 349
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
Length = 351
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/323 (62%), Positives = 252/323 (78%), Gaps = 5/323 (1%)
Query: 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
P+L + ++RF +FPI+Y +W+MYK+AQASFWTAEEVDLS+D+ HW +L EK+FISH+
Sbjct: 33 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHI 92
Query: 87 LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
LAFFAASDGIV ENL RF ++Q+PEAR FYGFQI +EN+HSEMYSLL++TYI+D K++
Sbjct: 93 LAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKR 152
Query: 147 HRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
LFNAIE +P V +KA WAL WI S F ER+V FA VEG+FFSGSF AIFWLKKRG
Sbjct: 153 EFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRG 212
Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
LMPGLTFSNELISRDEGLHCDFACL++ L + ++V ++ +AV+IE +F+ EALP
Sbjct: 213 LMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPV 272
Query: 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQ 325
LIGMN LM QYI+FVADRLLV LG + + ENPFD+ME ISL+GK NFFE+RV +YQ
Sbjct: 273 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQ 332
Query: 326 KASVMSSLQNGEKNFVFKLDEDF 348
+ +VM+ + VF LD DF
Sbjct: 333 RFAVMAETTDN----VFTLDADF 351
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/324 (61%), Positives = 249/324 (76%), Gaps = 3/324 (0%)
Query: 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISH 85
P+L E +R +FPI+Y ++W+ YK+A+ASFWTAEE+DLS+D+ W R+ ++E+ FIS
Sbjct: 97 PLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISR 156
Query: 86 VLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE 145
VLAFFAASDGIV ENL F ++QIPEA++FYGFQI +ENIHSE YSLL++TYIKD KE
Sbjct: 157 VLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKE 216
Query: 146 KHRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAIFWLKKR 204
LFNAI IP + +KA+WAL WI +D+ F ERLV FA +EG+FFSGSF +IFWLKKR
Sbjct: 217 SEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKR 276
Query: 205 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALP 264
G+MPGLTFSNELI RDEGLH DFACLL++ L+ + V +V EAVEIE ++ +ALP
Sbjct: 277 GMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALP 336
Query: 265 CALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDY 324
AL+GMN+ LM+QY++FVADRLLVA G ++ Y VENPFD+ME ISL GK NFFE+RV DY
Sbjct: 337 VALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVSDY 396
Query: 325 QKASVMSSLQNGEKNFVFKLDEDF 348
QKA VMS E F +EDF
Sbjct: 397 QKAGVMSKSTKQEAG-AFTFNEDF 419
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
Length = 399
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/324 (61%), Positives = 249/324 (76%), Gaps = 3/324 (0%)
Query: 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISH 85
P+L E +R +FPI+Y ++W+ YK+A+ASFWTAEE+DLS+D+ W R+ ++E+ FIS
Sbjct: 77 PLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISR 136
Query: 86 VLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE 145
VLAFFAASDGIV ENL F ++QIPEA++FYGFQI +ENIHSE YSLL++TYIKD KE
Sbjct: 137 VLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKE 196
Query: 146 KHRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAIFWLKKR 204
LFNAI IP + +KA+WAL WI +D+ F ERLV FA +EG+FFSGSF +IFWLKKR
Sbjct: 197 SEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKR 256
Query: 205 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALP 264
G+MPGLTFSNELI RDEGLH DFACLL++ L+ + V +V EAVEIE ++ +ALP
Sbjct: 257 GMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALP 316
Query: 265 CALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDY 324
AL+GMN+ LM+QY++FVADRLLVA G ++ Y VENPFD+ME ISL GK NFFE+RV DY
Sbjct: 317 VALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVSDY 376
Query: 325 QKASVMSSLQNGEKNFVFKLDEDF 348
QKA VMS E F +EDF
Sbjct: 377 QKAGVMSKSTKQEAG-AFTFNEDF 399
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/290 (64%), Positives = 231/290 (79%), Gaps = 1/290 (0%)
Query: 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
P+L + ++RF +FPI+Y +W+MYK+AQASFWTAEEVDLS+D+ HW +L EK+FISH+
Sbjct: 37 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHI 96
Query: 87 LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
LAFFAASDGIV ENL RF ++Q+PEAR FYGFQI +EN+HSEMYSLL++TYI+D K++
Sbjct: 97 LAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKR 156
Query: 147 HRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
LFNAIE +P V +KA WAL WI S F ER+V FA VEG+FFSGSF AIFWLKKRG
Sbjct: 157 EFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRG 216
Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
LMPGLTFSNELISRDEGLHCDFACL++ L + ++V ++ +AV+IE +F+ EALP
Sbjct: 217 LMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPV 276
Query: 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKAN 315
LIGMN LM QYI+FVADRLLV LG + + ENPFD+ME ISL+GK N
Sbjct: 277 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN 326
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/280 (66%), Positives = 224/280 (80%), Gaps = 1/280 (0%)
Query: 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
P+L E +RF +FPI Y +W+MYKKA+ASFWTAEEVDLS+D+QHWE L E++FISHV
Sbjct: 7 PLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHV 66
Query: 87 LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
LAFFAASDGIV ENL RF ++QI EAR FYGFQIAMENIHSEMYSLL++TYIKD KE+
Sbjct: 67 LAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKER 126
Query: 147 HRLFNAIENIPCVAQKAKWALDWIHSSD-SFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
LFNAIE +PCV +KA WAL WI + ++ ER+V FA VEGIFFSGSF +IFWLKKRG
Sbjct: 127 EFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRG 186
Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
LMPGLTFSNELISRDEGLHCDFACL++ L + ++V ++ AV IE +F+ EALP
Sbjct: 187 LMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPV 246
Query: 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWM 305
LIGMN +LM QYI+FVADRL++ LG + + VENPFD+M
Sbjct: 247 KLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM 286
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/280 (64%), Positives = 224/280 (80%)
Query: 28 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVL 87
IL ++ RF ++PI Y VW+ YKKA+ASFWTAEE+DLS D++ +E+L D+EKHFI HVL
Sbjct: 32 ILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVL 91
Query: 88 AFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKH 147
AFFAASDGIVLENLA++FL ++I EA+ FY FQIA+ENIHSE YSLL++ YIKD KE+
Sbjct: 92 AFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERM 151
Query: 148 RLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLM 207
LF+AIENIP V KA WA WI+ ++SFAER+V ACVEGI FSGSFCAIFW KK+ +
Sbjct: 152 NLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKL 211
Query: 208 PGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCAL 267
GLTFSNELISRDEGLH DF CL+YSLL +L + V ++V EAVE+E F+CE+LPC L
Sbjct: 212 HGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDL 271
Query: 268 IGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEF 307
IGMNS LMSQYI+FVADRLL LG + ++ +NPF+WM+
Sbjct: 272 IGMNSRLMSQYIEFVADRLLECLGSPKIFHAKNPFNWMDL 311
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
pdb|4DJN|B Chain B, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
Length = 311
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/290 (62%), Positives = 223/290 (76%), Gaps = 1/290 (0%)
Query: 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
P+L + ++RF +FPI+Y +W+ YK+AQASFWTAEEVDLS+D+ HW +L EK+FISH+
Sbjct: 22 PLLRKSSRRFVIFPIQYPDIWKXYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHI 81
Query: 87 LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
LAFFAASDGIV ENL RF ++Q+PEAR FYGFQI +EN+HSE YSLL++TYI+D K++
Sbjct: 82 LAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEXYSLLIDTYIRDPKKR 141
Query: 147 HRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
LFNAIE P V +KA WAL WI S F ER+V FA VEG+FFSGSF AIFWLKKRG
Sbjct: 142 EFLFNAIETXPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRG 201
Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
L PGLTFSNELISRDEGLHCDFACL + L + ++V ++ +AV+IE +F+ EALP
Sbjct: 202 LXPGLTFSNELISRDEGLHCDFACLXFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPV 261
Query: 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKAN 315
LIG N L QYI+FVADRLLV LG + + ENPFD+ E ISL+GK N
Sbjct: 262 GLIGXNCILXKQYIEFVADRLLVELGFSKVFQAENPFDFXENISLEGKTN 311
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
Length = 345
Score = 296 bits (757), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 143/322 (44%), Positives = 212/322 (65%), Gaps = 4/322 (1%)
Query: 28 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVL 87
+LME ++RF MFPI+Y ++W YKK +ASFWTAEE++L++D + +++L D +K +I ++L
Sbjct: 27 LLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLL 86
Query: 88 AFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKH 147
A +SD +V + L F +Q PE ++FYGFQI MENI+SE+YS++++ + KD K
Sbjct: 87 ALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK-NI 145
Query: 148 RLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAIFWLKKRGL 206
LF I N+P V KA + WI + DS +AERLV FA EGIF +G++ ++FWL + +
Sbjct: 146 PLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKI 205
Query: 207 MPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCA 266
MPGL +N I RD G + DF+CLL++ LR + + + + ++ EAVEIE ++ +LP
Sbjct: 206 MPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVE 265
Query: 267 LIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQK 326
GM+ + YI+FVAD LL G ++ YN NPF++ME ++ GK FFE++V DYQK
Sbjct: 266 KFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFMEDVATAGKTTFFEKKVSDYQK 325
Query: 327 ASVMSSLQNGEKNFVFKLDEDF 348
AS MS K F D+DF
Sbjct: 326 ASDMSKSATPSKEINF--DDDF 345
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
Reductase R2 From Chlamydia Trachomatis
Length = 346
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 157/318 (49%), Gaps = 27/318 (8%)
Query: 38 MFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHW--ERLLDSEKHFISHVLAFFAASDG 95
+ PI+YK WE Y A+ W E+ + +D++ W +RL + E+ I L FF+ ++
Sbjct: 31 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAES 90
Query: 96 IVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIEN 155
+V N+ + PEAR + Q E +H+ Y + E+ D KE +FNA
Sbjct: 91 LVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTYLYICESLGLDEKE---IFNAYNE 147
Query: 156 IPCVAQKAKWAL-------------DWIHSSDSFAERLVGFACV-EGIFFSGSFCAIFWL 201
+ K + + D + F + LVG+ + EGIFF F I
Sbjct: 148 RAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSF 207
Query: 202 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--W-----QKVHHMVHEAVEI 254
++ M G+ + I RDE +H +F L + +++ W Q++ ++ AV++
Sbjct: 208 HRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDL 267
Query: 255 ETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWM-EFISLQGK 313
E ++ + LP ++G+ +S+ Y++ +ADR L +G + Y+ +NPF WM E I L +
Sbjct: 268 EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKE 327
Query: 314 ANFFERRVGDYQKASVMS 331
NFFE RV +YQ A+ ++
Sbjct: 328 KNFFETRVIEYQHAASLT 345
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8G|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
Length = 366
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 157/318 (49%), Gaps = 27/318 (8%)
Query: 38 MFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHW--ERLLDSEKHFISHVLAFFAASDG 95
+ PI+YK WE Y A+ W E+ + +D++ W +RL + E+ I L FF+ ++
Sbjct: 51 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAES 110
Query: 96 IVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIEN 155
+V N+ + PEAR + Q E +H+ + + E+ D KE +FNA
Sbjct: 111 LVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNE 167
Query: 156 IPCVAQKAKWAL-------------DWIHSSDSFAERLVGFACV-EGIFFSGSFCAIFWL 201
+ K + + D + F + LVG+ + EGIFF F I
Sbjct: 168 RAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSF 227
Query: 202 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--W-----QKVHHMVHEAVEI 254
++ M G+ + I RDE +H +F L + +++ W Q++ ++ AV++
Sbjct: 228 HRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDL 287
Query: 255 ETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWM-EFISLQGK 313
E ++ + LP ++G+ +S+ Y++ +ADR L +G + Y+ +NPF WM E I L +
Sbjct: 288 EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKE 347
Query: 314 ANFFERRVGDYQKASVMS 331
NFFE RV +YQ A+ ++
Sbjct: 348 KNFFETRVIEYQHAASLT 365
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
Reductase From Chlamydia Trachomatis
Length = 346
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 157/318 (49%), Gaps = 27/318 (8%)
Query: 38 MFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHW--ERLLDSEKHFISHVLAFFAASDG 95
+ PI+YK WE Y A+ W E+ + +D++ W +RL + E+ I L FF+ ++
Sbjct: 31 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAES 90
Query: 96 IVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIEN 155
+V N+ + PEAR + Q E +H+ + + E+ D KE +FNA
Sbjct: 91 LVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNE 147
Query: 156 IPCVAQKAKWAL-------------DWIHSSDSFAERLVGFACV-EGIFFSGSFCAIFWL 201
+ K + + D + F + LVG+ + EGIFF F I
Sbjct: 148 RAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSF 207
Query: 202 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--W-----QKVHHMVHEAVEI 254
++ M G+ + I RDE +H +F L + +++ W Q++ ++ AV++
Sbjct: 208 HRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDL 267
Query: 255 ETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWM-EFISLQGK 313
E ++ + LP ++G+ +S+ Y++ +ADR L +G + Y+ +NPF WM E I L +
Sbjct: 268 EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKE 327
Query: 314 ANFFERRVGDYQKASVMS 331
NFFE RV +YQ A+ ++
Sbjct: 328 KNFFETRVIEYQHAASLT 345
>pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
Length = 346
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 137/308 (44%), Gaps = 23/308 (7%)
Query: 41 IRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLE- 99
+R+ + +YK A+FWT E++ S D + + L ++E+ ++ A D + +
Sbjct: 36 VRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDY 95
Query: 100 -NLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPC 158
AA +L D + + FQ E +H++ YS +L + + + + +F ++
Sbjct: 96 SXRAAEYLTDSSLAALXSVLSFQ---EVVHNQSYSYVLSSLVPKATQ-DEIFEYWKHDDV 151
Query: 159 VAQKAKWALDWIH------SSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTF 212
+ ++ ++ +D + +F E +V +EG+ F F + L + +
Sbjct: 152 LKERNEFIIDGYEKFVDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKXVSTST 211
Query: 213 SNELISRDEGLHCD-FACLLYSLLRK--RLHWQK----VHHMVHEAVEIETQFVCEALPC 265
I+RDE LH F + LL + L+ ++ V + +A ++E + +
Sbjct: 212 XINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLXKAADLEKDWFRYIIGD 271
Query: 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYN--VENPFDWMEFIS--LQGKANFFERRV 321
+ G+N YI F+A++ V LG ++ Y NP W+ GK++FFE++
Sbjct: 272 KIPGINPEDXETYISFIANKRAVQLGXEKPYPEIKHNPXKWIRAYEDVNSGKSDFFEQKS 331
Query: 322 GDYQKASV 329
Y K S
Sbjct: 332 RQYAKVSA 339
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 122/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +N
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 122/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +N
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
Length = 339
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + + I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +N
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
Length = 375
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + + I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +N
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
Group P6(1)22
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 92
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 93 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 149
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 150 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 209
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 269
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 270 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 329
Query: 300 -NPFDWM 305
NP W+
Sbjct: 330 SNPIPWI 336
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|3UUS|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|E Chain E, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|F Chain F, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|G Chain G, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|H Chain H, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 375
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRX 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +N
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 121/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
+F F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVAFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
Length = 340
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 121/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS ++ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
Length = 375
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 121/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS ++ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSHTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
Length = 375
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS + ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSXTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
Length = 375
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 122/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + F+ EEVD+S+D ++ L + EKH L + + I +
Sbjct: 32 KYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS Y+ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +N
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 120/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS ++ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RD LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
Length = 296
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 2/192 (1%)
Query: 48 EMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLN 107
E++ + +FW E++ +S D+Q W ++ E+ V D I A L
Sbjct: 30 EVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLP 89
Query: 108 DIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWAL 167
D + A Y ME++H++ YS + T + + + + F E + +KAK +
Sbjct: 90 DAETMHEEAVYTNIAFMESVHAKSYSNIFMT-LASTPQINEAFRWSEENENLQRKAKIIM 148
Query: 168 DWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 227
+ + D +++ +F+SG + ++ L R + LI RDE +H +
Sbjct: 149 SYYNGDDPLKKKVASTLLESFLFYSGFYLPMY-LSSRAKLTNTADIIRLIIRDESVHGYY 207
Query: 228 ACLLYSLLRKRL 239
Y K+L
Sbjct: 208 IGYKYQQGVKKL 219
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 319
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 2/192 (1%)
Query: 48 EMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLN 107
E++ + ++FW E+V LS D+ W+ L +E+ V D I A +
Sbjct: 21 EVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMA 80
Query: 108 DIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWAL 167
D P A ME +H+ YS + T + +KE + E P + +KA+ L
Sbjct: 81 DAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQ-TKEVDAAYAWSEENPPLQRKAQIIL 139
Query: 168 DWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 227
S + +++ +F+SG F + RG + LI RDE +H +
Sbjct: 140 AHYVSDEPLKKKIASVFLESFLFYSG-FWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYY 198
Query: 228 ACLLYSLLRKRL 239
Y + ++L
Sbjct: 199 IGYKYQIALQKL 210
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
Length = 329
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 2/192 (1%)
Query: 48 EMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLN 107
E++ + +FW E++ +S D+Q W ++ E+ V D I A L
Sbjct: 31 EVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLP 90
Query: 108 DIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWAL 167
D + A Y ME++H++ YS + T + + + + F E + +KAK +
Sbjct: 91 DAETMHEEAVYTNIAFMESVHAKSYSNIFMT-LASTPQINEAFRWSEENENLQRKAKIIM 149
Query: 168 DWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 227
+ + D +++ +F+SG + ++ L R + LI RDE +H +
Sbjct: 150 SYYNGDDPLKKKVASTLLESFLFYSGFYLPMY-LSSRAKLTNTADIIRLIIRDESVHGYY 208
Query: 228 ACLLYSLLRKRL 239
Y K+L
Sbjct: 209 IGYKYQQGVKKL 220
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 120/307 (39%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS ++ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRA 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RDE LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 119/307 (38%), Gaps = 46/307 (14%)
Query: 42 RYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101
+Y ++ +K + FW EEVD+S+D ++ L + EKH L + D I +
Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 91
Query: 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQ 161
L I IPE + E IHS ++ ++ + D +F+ I + +
Sbjct: 92 NVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPS---VVFDDIVTNEQIQK 148
Query: 162 KAK---------------WAL--DWIHSSD------SFAER-------LVGFACVEGIFF 191
+A+ W L + H+ + S E L+ +E I
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRX 208
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHE- 250
SF F +R LM G LI+RD LH + +LLR ++ + E
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268
Query: 251 AVEIETQFVCEA-----------LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
E FV A ++IG+N ++ QY++++ + + A+G +
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 328
Query: 300 -NPFDWM 305
NP W+
Sbjct: 329 SNPIPWI 335
>pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
Length = 296
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 2/177 (1%)
Query: 48 EMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLN 107
E++ + +FW E+V +S D+ W L EK V D I A +
Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIP 85
Query: 108 DIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWAL 167
D P A ME++H++ YS + T + + E F E + +KA+ L
Sbjct: 86 DALTPHEEAVLTNIAFMESVHAKSYSQIFST-LCSTAEIDDAFRWSEENRNLQRKAEIVL 144
Query: 168 DWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH 224
+ ++ +F+SG + ++W R + LI RDE +H
Sbjct: 145 QSYRGDEPLKRKVASTLLESFLFYSGFYLPMYW-SSRAKLTNTADMIRLIIRDEAVH 200
>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
pdb|4DR0|B Chain B, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
Length = 350
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 23/297 (7%)
Query: 50 YKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASD---GIVLENLAARFL 106
Y + FW EE+ L+ D+ W+ L +E+ VLA D G + A +
Sbjct: 43 YNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHV 102
Query: 107 NDIQIPEARAFYGFQIAMEN-IHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKW 165
+ Q +A F MEN +H++ YS + T + ++ + +F ++ + +KA+
Sbjct: 103 DGHQ---RKAVLNFMAMMENAVHAKSYSNIFMT-LAPTETINEVFEWVKQNKYLQKKAQM 158
Query: 166 ALDW---IHSSD--SFAERLVGFACVEG-IFFSGSFCAIFWLKKRGLMPGLTFSNELISR 219
+ I D S + +V +E +F+SG + +++ + LM N LI R
Sbjct: 159 IVGLYKAIQKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIIN-LILR 217
Query: 220 DEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCA-----LIGMNSSL 274
DE +H + LL + + +K + A+++ Q L +G+ S
Sbjct: 218 DEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYDQVGL-SHD 276
Query: 275 MSQYIKFVADRLLVALGCQRKYNVE--NPFDWMEFISLQGKANFFERRVGDYQKASV 329
+ ++I++ A++ L+ LG + E NP + +FF + Y+KA+V
Sbjct: 277 VKKFIRYNANKALMNLGFDPYFEEEDINPIVLNGLNTKTKSHDFFSMKGNGYKKATV 333
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli
pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
With Ferrous Ions
pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
Length = 319
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 6/179 (3%)
Query: 48 EMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL--AARF 105
E++ + ++FW E+V LS D+ W+ L E+ V D L+N+ A
Sbjct: 21 EVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLD--TLQNVIGAPSL 78
Query: 106 LNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKW 165
+ D P A ME +H+ YS + T + + EN P + +KA+
Sbjct: 79 MPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAP-LQRKAQI 137
Query: 166 ALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH 224
D +++ +F+SG F + RG + LI RDE +H
Sbjct: 138 IQQHYRGDDPLKKKIASVFLESFLFYSG-FWLPMYFSSRGKLTNTADLIRLIIRDEAVH 195
>pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
pdb|4AC8|A Chain A, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|B Chain B, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|C Chain C, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|D Chain D, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
Length = 323
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 39/200 (19%)
Query: 48 EMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLN 107
+++ A FW ++D ++D WE+L D E+ + + + F A + V E++ F++
Sbjct: 31 KLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMS 89
Query: 108 DIQIPE--ARAFYGFQIAMENI-HSEMYSLLLET---------YIKDSKEKHRLF----- 150
++ A Y Q A E H++++ + L+ Y+ D ++F
Sbjct: 90 AMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELP 149
Query: 151 ---NAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLK---KR 204
NA+ P A + + ++ + H VEG+ + A W K +R
Sbjct: 150 ECLNALSADPSPAAQVRASVTYNH-------------IVEGMLALTGYYA--WHKICVER 194
Query: 205 GLMPGLTFSNELISRDEGLH 224
++PG+ I DE H
Sbjct: 195 AILPGMQELVRRIGDDERRH 214
>pdb|3V4P|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 503
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 294 RKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNF 340
R ++PF + +SL G A FER VG + SV +L + E F
Sbjct: 200 RLERCQSPFSFHHVLSLTGDAQAFEREVG---RQSVSGNLDSPEGGF 243
>pdb|2LBP|A Chain A, Structure Of The L-Leucine-Binding Protein Refined At 2.4
Angstroms Resolution And Comparison With The Leu(Slash)
Ile(Slash)val-Binding Protein Structure
Length = 346
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 204 RGLMPGLTFSNELISRDEGLHC---DFACLLYSLLRKRL-------HWQKVHHMVHEA-- 251
R + GL +N + +G+ DF+ L+ L ++ + ++ ++ M+ +A
Sbjct: 156 RSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARS 215
Query: 252 VEIETQFVC-EALPCALI---------GMNSSLMSQYIKFVADRLLVALGCQRKYNVENP 301
V ++TQF+ E + A + GM ++ +Y + A++ +V K + P
Sbjct: 216 VGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGP 275
Query: 302 FDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDED 347
+ W+ + ++Q A ER D A V NG + L+ D
Sbjct: 276 YVWITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWD 321
>pdb|1USG|A Chain A, L-Leucine-Binding Protein, Apo Form
pdb|1USK|A Chain A, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|B Chain B, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|C Chain C, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|D Chain D, L-Leucine-Binding Protein With Leucine Bound
pdb|1USI|A Chain A, L-Leucine-Binding Protein With Phenylalanine Bound
pdb|1USI|C Chain C, L-Leucine-Binding Protein With Phenylalanine Bound
Length = 346
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 204 RGLMPGLTFSNELISRDEGLHC---DFACLLYSLLRKRL-------HWQKVHHMVHEA-- 251
R + GL +N + +G+ DF+ L+ L ++ + ++ ++ M+ +A
Sbjct: 156 RSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARS 215
Query: 252 VEIETQFVC-EALPCALI---------GMNSSLMSQYIKFVADRLLVALGCQRKYNVENP 301
V ++TQF+ E + A + GM ++ +Y + A++ +V K + P
Sbjct: 216 VGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGP 275
Query: 302 FDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDED 347
+ W+ + ++Q A ER D A V NG + L+ D
Sbjct: 276 YVWITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWD 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,519,070
Number of Sequences: 62578
Number of extensions: 367707
Number of successful extensions: 911
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 61
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)