Query 018933
Match_columns 348
No_of_seqs 133 out of 1123
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00211 ribonucleoside-diphos 100.0 1.2E-86 2.5E-91 638.5 37.0 328 17-348 3-330 (330)
2 PLN02492 ribonucleoside-diphos 100.0 6.1E-85 1.3E-89 625.5 37.1 323 26-348 1-324 (324)
3 KOG1567 Ribonucleotide reducta 100.0 7E-86 1.5E-90 591.8 23.8 326 19-348 18-344 (344)
4 PRK07209 ribonucleotide-diphos 100.0 8.9E-77 1.9E-81 577.1 35.9 306 22-330 35-366 (369)
5 PRK09614 nrdF ribonucleotide-d 100.0 7.3E-75 1.6E-79 556.6 35.4 299 27-329 2-314 (324)
6 PRK09101 nrdB ribonucleotide-d 100.0 1E-74 2.3E-79 563.5 35.7 310 22-334 12-367 (376)
7 COG0208 NrdF Ribonucleotide re 100.0 1.3E-74 2.9E-79 550.5 35.4 306 25-332 15-340 (348)
8 PRK12759 bifunctional gluaredo 100.0 8.8E-72 1.9E-76 549.3 34.5 311 15-332 80-403 (410)
9 PRK13966 nrdF2 ribonucleotide- 100.0 2E-71 4.4E-76 530.5 35.4 290 34-329 12-314 (324)
10 PF00268 Ribonuc_red_sm: Ribon 100.0 4.5E-69 9.7E-74 507.2 34.1 278 27-306 2-281 (281)
11 PRK13965 ribonucleotide-diphos 100.0 9.3E-69 2E-73 514.4 34.1 290 34-329 23-325 (335)
12 cd01049 RNRR2 Ribonucleotide R 100.0 1.6E-66 3.5E-71 491.4 34.0 272 36-308 1-286 (288)
13 PRK13967 nrdF1 ribonucleotide- 100.0 2.9E-66 6.2E-71 495.0 35.4 292 33-329 9-312 (322)
14 cd07911 RNRR2_Rv0233_like Ribo 100.0 8.4E-50 1.8E-54 375.8 31.7 249 46-295 9-269 (280)
15 PRK08326 ribonucleotide-diphos 100.0 7.5E-50 1.6E-54 380.4 30.9 243 47-295 28-289 (311)
16 PF11583 AurF: P-aminobenzoate 98.5 2.7E-05 5.9E-10 74.3 20.5 178 55-241 46-233 (304)
17 cd01057 AAMH_A Aromatic and Al 97.8 0.011 2.3E-07 59.7 24.3 220 72-295 68-301 (465)
18 PF02332 Phenol_Hydrox: Methan 97.4 0.05 1.1E-06 50.0 20.6 162 74-239 66-231 (233)
19 cd01050 Acyl_ACP_Desat Acyl AC 97.2 0.057 1.2E-06 51.3 18.8 165 54-240 24-210 (297)
20 cd00657 Ferritin_like Ferritin 97.2 0.019 4E-07 45.5 13.5 111 104-231 19-129 (130)
21 cd01058 AAMH_B Aromatic and Al 97.1 0.14 3.1E-06 48.9 21.5 166 70-238 88-257 (304)
22 TIGR02156 PA_CoA_Oxy1 phenylac 97.0 0.36 7.7E-06 45.7 23.2 202 75-295 17-235 (289)
23 PF05138 PaaA_PaaC: Phenylacet 96.9 0.38 8.2E-06 45.1 23.4 207 72-295 7-226 (263)
24 PRK13778 paaA phenylacetate-Co 96.6 0.68 1.5E-05 44.3 23.4 202 75-295 35-253 (314)
25 PF11266 DUF3066: Protein of u 95.8 1.2 2.7E-05 38.9 20.8 199 76-294 4-207 (219)
26 PF03405 FA_desaturase_2: Fatt 95.7 0.26 5.6E-06 47.5 13.4 166 55-241 27-217 (330)
27 PRK13654 magnesium-protoporphy 95.3 0.45 9.8E-06 45.5 13.2 208 71-302 72-293 (355)
28 CHL00185 ycf59 magnesium-proto 95.2 0.95 2.1E-05 43.2 14.9 208 71-302 68-289 (351)
29 PRK14983 aldehyde decarbonylas 95.0 1.3 2.9E-05 39.1 14.1 199 76-294 14-217 (231)
30 TIGR02029 AcsF magnesium-proto 94.9 1.9 4E-05 41.0 15.7 208 71-302 62-283 (337)
31 cd01047 ACSF Aerobic Cyclase S 94.1 2.1 4.5E-05 40.5 14.1 208 71-302 52-273 (323)
32 PLN02508 magnesium-protoporphy 93.4 1.8 4E-05 41.3 12.5 208 71-302 68-289 (357)
33 TIGR02029 AcsF magnesium-proto 92.9 0.53 1.2E-05 44.6 8.3 44 192-235 86-131 (337)
34 PRK13654 magnesium-protoporphy 92.9 0.49 1.1E-05 45.2 8.1 44 192-235 96-141 (355)
35 cd01047 ACSF Aerobic Cyclase S 92.9 0.48 1E-05 44.7 7.9 44 192-235 76-121 (323)
36 COG1633 Uncharacterized conser 92.2 7.6 0.00016 34.1 14.8 124 104-236 45-170 (176)
37 CHL00185 ycf59 magnesium-proto 92.2 0.68 1.5E-05 44.2 8.0 44 192-235 92-137 (351)
38 PLN02508 magnesium-protoporphy 91.6 0.17 3.7E-06 48.1 3.3 44 192-235 92-137 (357)
39 cd01041 Rubrerythrin Rubreryth 91.2 4.7 0.0001 33.3 11.5 106 104-234 25-132 (134)
40 PF04305 DUF455: Protein of un 91.1 13 0.00028 34.6 15.6 142 76-239 63-212 (253)
41 PLN00179 acyl- [acyl-carrier p 90.6 5 0.00011 39.3 12.3 114 114-240 157-273 (390)
42 cd01044 Ferritin_CCC1_N Ferrit 89.5 10 0.00023 30.9 14.2 102 103-231 18-122 (125)
43 COG3396 Uncharacterized conser 85.7 31 0.00067 32.2 22.9 216 74-308 11-253 (265)
44 cd01045 Ferritin_like_AB Uncha 84.9 18 0.0004 28.9 15.8 37 104-140 19-55 (139)
45 TIGR03225 benzo_boxB benzoyl-C 80.3 64 0.0014 31.9 15.5 209 63-294 86-302 (471)
46 PF02915 Rubrerythrin: Rubrery 78.4 7.5 0.00016 31.4 6.4 111 105-232 20-137 (137)
47 cd07908 Mn_catalase_like Manga 77.6 42 0.00091 28.2 12.1 115 100-230 35-152 (154)
48 cd01051 Mn_catalase Manganese 76.8 47 0.001 28.5 11.7 105 110-235 51-155 (156)
49 PF10118 Metal_hydrol: Predict 76.8 64 0.0014 30.0 17.5 144 81-237 27-175 (253)
50 cd07908 Mn_catalase_like Manga 72.7 12 0.00027 31.6 6.4 61 200-260 39-118 (154)
51 PF03405 FA_desaturase_2: Fatt 63.2 58 0.0013 31.6 9.4 41 104-144 176-217 (330)
52 TIGR02158 PA_CoA_Oxy3 phenylac 57.5 1.6E+02 0.0034 27.2 22.0 174 105-294 15-199 (237)
53 PLN00179 acyl- [acyl-carrier p 55.8 63 0.0014 31.8 8.2 42 103-144 232-274 (390)
54 cd01050 Acyl_ACP_Desat Acyl AC 55.7 91 0.002 29.8 9.3 41 104-144 168-211 (297)
55 PF08671 SinI: Anti-repressor 54.6 8.2 0.00018 23.7 1.3 27 256-282 3-29 (30)
56 PF13668 Ferritin_2: Ferritin- 50.5 1.4E+02 0.003 24.4 13.5 98 108-232 34-135 (137)
57 cd01051 Mn_catalase Manganese 48.7 1.6E+02 0.0034 25.2 8.9 36 104-139 120-155 (156)
58 cd00907 Bacterioferritin Bacte 46.6 83 0.0018 26.1 6.9 74 189-262 18-100 (153)
59 cd01046 Rubrerythrin_like rubr 45.9 1.3E+02 0.0029 24.3 7.8 53 202-259 27-79 (123)
60 PF14518 Haem_oxygenas_2: Iron 45.5 68 0.0015 24.9 5.8 77 126-205 16-92 (106)
61 PF12902 Ferritin-like: Ferrit 40.2 31 0.00068 31.5 3.4 39 199-238 20-58 (227)
62 PF06945 DUF1289: Protein of u 38.9 34 0.00073 23.5 2.6 22 67-88 25-46 (51)
63 cd00657 Ferritin_like Ferritin 37.8 1.8E+02 0.0038 21.9 7.3 26 108-133 102-127 (130)
64 cd01041 Rubrerythrin Rubreryth 37.7 1.5E+02 0.0032 24.2 6.9 56 202-257 27-87 (134)
65 cd01046 Rubrerythrin_like rubr 34.6 2.5E+02 0.0053 22.7 14.5 95 105-233 26-120 (123)
66 PF00268 Ribonuc_red_sm: Ribon 34.5 2E+02 0.0042 26.9 8.0 76 156-236 36-113 (281)
67 PF05067 Mn_catalase: Manganes 33.9 2.7E+02 0.0059 26.4 8.6 74 51-140 121-195 (283)
68 PF02915 Rubrerythrin: Rubrery 32.7 2.5E+02 0.0054 22.1 7.7 33 103-135 104-136 (137)
69 COG1592 Rubrerythrin [Energy p 31.4 3.5E+02 0.0076 23.5 13.5 101 103-236 27-130 (166)
70 COG1528 Ftn Ferritin-like prot 31.2 2.8E+02 0.0061 24.2 7.6 54 204-260 33-99 (167)
71 PF03810 IBN_N: Importin-beta 31.2 49 0.0011 23.8 2.7 33 49-87 39-71 (77)
72 PTZ00211 ribonucleoside-diphos 29.9 2.4E+02 0.0052 27.2 7.9 78 63-141 142-223 (330)
73 PRK09614 nrdF ribonucleotide-d 27.9 1.9E+02 0.0042 27.6 6.9 60 174-236 56-116 (324)
74 cd01044 Ferritin_CCC1_N Ferrit 26.2 1.2E+02 0.0026 24.5 4.4 40 200-239 19-58 (125)
75 cd01049 RNRR2 Ribonucleotide R 25.1 5.5E+02 0.012 23.7 10.8 59 176-237 47-106 (288)
76 PF13668 Ferritin_2: Ferritin- 24.1 3.9E+02 0.0084 21.6 7.9 33 104-136 103-135 (137)
77 COG1592 Rubrerythrin [Energy p 22.1 1.5E+02 0.0033 25.8 4.4 35 200-234 28-62 (166)
78 PF09959 DUF2193: Uncharacteri 22.1 7.5E+02 0.016 24.8 9.4 80 184-263 123-214 (499)
79 PRK13967 nrdF1 ribonucleotide- 22.0 3.8E+02 0.0082 25.7 7.6 76 156-236 39-116 (322)
80 PLN02492 ribonucleoside-diphos 21.5 4.3E+02 0.0094 25.3 7.9 78 63-141 131-212 (324)
81 PRK12759 bifunctional gluaredo 21.2 8.2E+02 0.018 24.3 11.7 74 67-140 220-297 (410)
82 PF06556 ASFV_p27: IAP-like pr 20.8 1.1E+02 0.0023 24.5 2.9 44 284-327 34-83 (131)
No 1
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=100.00 E-value=1.2e-86 Score=638.55 Aligned_cols=328 Identities=69% Similarity=1.205 Sum_probs=315.2
Q ss_pred hcccccccCccccccCCCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 018933 17 QGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGI 96 (348)
Q Consensus 17 ~~~~~~~~~e~il~~~~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~ 96 (348)
..+++.|++|+||+||++|++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++
T Consensus 3 ~~~~~~~~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~ 82 (330)
T PTZ00211 3 EAMKENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDGI 82 (330)
T ss_pred hhhhcccccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHH
Q 018933 97 VLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSF 176 (348)
Q Consensus 97 v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~ 176 (348)
|++++.+.+++.++.||+++|+++|+++|+||+++||+++++++.|+.++.++|+++.++|++++|++|+.++++++.++
T Consensus 83 v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~~~~ 162 (330)
T PTZ00211 83 VLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINSSNSF 162 (330)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcchHH
Confidence 99999888999999999999999999999999999999999999889999999999999999999999999999988889
Q ss_pred HHHHHHHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 018933 177 AERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIET 256 (348)
Q Consensus 177 ~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eav~~E~ 256 (348)
++++++++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++++||++|.
T Consensus 163 ~~~lv~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~~ave~E~ 242 (330)
T PTZ00211 163 AERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRERVQEIIKEAVEIER 242 (330)
T ss_pred HHHHHHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhcccccCCCcccccccccccccccccccCC
Q 018933 257 QFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNG 336 (348)
Q Consensus 257 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFE~~~t~Y~~~~~~~~~~~~ 336 (348)
+|+.+++|++++||+.+++++||+|+||+||++||++|+|+++||+|||+.....+++||||+++|+|+|++.+.+.
T Consensus 243 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~--- 319 (330)
T PTZ00211 243 EFICDALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYNSKNPFDWMDMISLQGKTNFFEKRVGEYQKAGVMAER--- 319 (330)
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCchHHHhccccccccccccchhhhhcccccccc---
Confidence 99999999999999999999999999999999999999999999999998877788999999999999999776433
Q ss_pred CcccccccCCCC
Q 018933 337 EKNFVFKLDEDF 348 (348)
Q Consensus 337 ~~~~~~~~~~df 348 (348)
++++|+|||||
T Consensus 320 -~~~~~~~~~df 330 (330)
T PTZ00211 320 -TSKVFSLDADF 330 (330)
T ss_pred -ccccccccCCC
Confidence 25679999998
No 2
>PLN02492 ribonucleoside-diphosphate reductase
Probab=100.00 E-value=6.1e-85 Score=625.48 Aligned_cols=323 Identities=79% Similarity=1.340 Sum_probs=309.9
Q ss_pred ccccccCCCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018933 26 EPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARF 105 (348)
Q Consensus 26 e~il~~~~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~ 105 (348)
|+||.+|++|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+
T Consensus 1 e~~l~en~~r~~~~p~~Y~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~ 80 (324)
T PLN02492 1 EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEKLTDDERHFISHVLAFFAASDGIVLENLAARF 80 (324)
T ss_pred CcccccCCCCceecCCCcHHHHHHHHHHHHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 018933 106 LNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFAC 185 (348)
Q Consensus 106 ~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~ 185 (348)
++.+++||+++++++|+++|+||+++||+|+++++.||+++.++|+++.++|.+++|++|+.++++++++++++++++++
T Consensus 81 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~~~ 160 (324)
T PLN02492 81 MKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFAC 160 (324)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998889999999999999999999999999999988899999999999
Q ss_pred hhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018933 186 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265 (348)
Q Consensus 186 lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eav~~E~~~~~~~~~~ 265 (348)
+|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.++++++|++++++||++|.+|+.+++|.
T Consensus 161 lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~l~~eav~~E~~~~~~~~~~ 240 (324)
T PLN02492 161 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLSEERVKEIVCEAVEIEKEFVCDALPC 240 (324)
T ss_pred hhHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhcccccCCCcccccccccccccccccccCC-Cccccccc
Q 018933 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNG-EKNFVFKL 344 (348)
Q Consensus 266 ~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFE~~~t~Y~~~~~~~~~~~~-~~~~~~~~ 344 (348)
+++||+.+.+++||+|+||+||++||++|+|++.||+|||+.++..+++||||+|+|+|+|++.+.+.... .++++|+|
T Consensus 241 ~~~Gl~~~~~~~yi~y~ad~~L~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~~~~~~~~~~~~~ 320 (324)
T PLN02492 241 ALVGMNADLMSQYIEFVADRLLVALGYEKVYNVVNPFDWMELISLQGKTNFFEKRVGEYQKAGVMSSLNGGGADNHVFSL 320 (324)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCchHHHhccccccccccccchhhhhcccccccccccccccceecc
Confidence 99999999999999999999999999999999999999998887778999999999999999887665321 23567999
Q ss_pred CCCC
Q 018933 345 DEDF 348 (348)
Q Consensus 345 ~~df 348 (348)
||||
T Consensus 321 ~~df 324 (324)
T PLN02492 321 DEDF 324 (324)
T ss_pred CCCC
Confidence 9999
No 3
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=7e-86 Score=591.83 Aligned_cols=326 Identities=69% Similarity=1.154 Sum_probs=317.9
Q ss_pred ccccccCccccccCCCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 018933 19 EQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVL 98 (348)
Q Consensus 19 ~~~~~~~e~il~~~~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~ 98 (348)
.++..++|++|.+++.|++++|++|+++|+.|||++++||+++|||+++|..||.+|++.||..+.++|++++++|++|.
T Consensus 18 ~~~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~~dw~~L~~~er~fIs~vlaffaasdGivn 97 (344)
T KOG1567|consen 18 MKEGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWEKLNDDERHFISHVLAFFAASDGIVN 97 (344)
T ss_pred ccccccccccccCCCCCceecccchHHHHHHHHhhhcccCcHHHhccccchhhHHHcChhhhhhHHHHHHHHhccccchh
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCc-hHHH
Q 018933 99 ENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS-DSFA 177 (348)
Q Consensus 99 ~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~-~~~~ 177 (348)
+|++.++...++.||+|+||++|+++||||+++||.++++++.||.||+-+|+.+.+.|++++|++|+.+|+.+. .+++
T Consensus 98 enl~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~d~~s~fa 177 (344)
T KOG1567|consen 98 ENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWISDKDSLFA 177 (344)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhhHHHHHHHHHHHHHhcCCCccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999765 4599
Q ss_pred HHHHHHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 018933 178 ERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQ 257 (348)
Q Consensus 178 ~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eav~~E~~ 257 (348)
+++|||+++|||+|+|||+.+|||.++|+|||++-.+.+|+|||++|+.|+|.++.+|+.+|++++|++++.+||++|.+
T Consensus 178 eRlvAFAavEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~dFacll~~~l~~kp~~~ri~eII~eAV~IEqe 257 (344)
T KOG1567|consen 178 ERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFSHLKKKPNEERIEEIITEAVEIEQE 257 (344)
T ss_pred HHHHHHHHHhhhhcccchhhhhhhhhcCCCCccccchhhhhhccCCcccHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhcccccCCCcccccccccccccccccccCCC
Q 018933 258 FVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGE 337 (348)
Q Consensus 258 ~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFE~~~t~Y~~~~~~~~~~~~~ 337 (348)
|...++|...+|||...|.+||+|+||++|..||+.+.|+++||++||+.+++.+|+||||+||++||+.++|.+..
T Consensus 258 f~~eaLPv~liGMN~~lM~qYIEFVADrLL~~lG~~K~Yn~~NPFdfMEnISl~GKTNFFEKrVseYQk~~vMs~~~--- 334 (344)
T KOG1567|consen 258 FLTEALPVNLIGMNCDLMSQYIEFVADRLLVELGNEKYYNAENPFDFMENISLAGKTNFFEKRVSEYQKAGVMSNEP--- 334 (344)
T ss_pred HHHhccchhhhccCHHHHHHHHHHHHHHHHHHhCccceecCCCchHHHHHhhhccccchHHhhhHHhhhchhccCCc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred cccccccCCCC
Q 018933 338 KNFVFKLDEDF 348 (348)
Q Consensus 338 ~~~~~~~~~df 348 (348)
+++|++|+||
T Consensus 335 -~~~F~ld~dF 344 (344)
T KOG1567|consen 335 -ENVFTLDADF 344 (344)
T ss_pred -cceeccccCC
Confidence 6799999998
No 4
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=8.9e-77 Score=577.07 Aligned_cols=306 Identities=29% Similarity=0.593 Sum_probs=285.4
Q ss_pred cccCccccccCCCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhc---CCHHHHHHHHHHHHHHHHHHHHHH
Q 018933 22 QEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWER---LLDSEKHFISHVLAFFAASDGIVL 98 (348)
Q Consensus 22 ~~~~e~il~~~~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~---L~~~er~~~~~~la~l~~~d~~v~ 98 (348)
...+++|++|+++..+++|++|||+|++|+++.++||.|+|||+++|+.||++ ||+.||++++++|++|+++|++|+
T Consensus 35 ~~~~~~i~~g~~~~~~~~p~kY~~~~~~y~~~~~nfW~peEI~ls~Di~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds~v~ 114 (369)
T PRK07209 35 NVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVKRNLGFFSTADSLVA 114 (369)
T ss_pred cccccceecCCCCccccCCcccHHHHHHHHHHHhCCCCchhcCccccHHHHccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899998888999999999999999999999999999999999999974 999999999999999999999999
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcC------
Q 018933 99 ENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS------ 172 (348)
Q Consensus 99 ~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~------ 172 (348)
+++.+.+.+.++.||+++|+++|+++|+||+++||+++++++.+++ ++|+++.++|++++|++|+.++++.
T Consensus 115 ~nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~---e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~ 191 (369)
T PRK07209 115 NNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEG---EIFNMYHEVPSIRAKDEFLIPFTRSLTDPNF 191 (369)
T ss_pred HhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Confidence 9998889999999999999999999999999999999999987664 5899999999999999999998742
Q ss_pred -------chHHHHHHHHHH-HhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh----
Q 018933 173 -------SDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---- 240 (348)
Q Consensus 173 -------~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~---- 240 (348)
++++++++++++ ++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++.+.|
T Consensus 192 ~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~~~ 271 (369)
T PRK07209 192 KTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHLWT 271 (369)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 345899999986 58999999999999999999999999999999999999999999999999987654
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCCcchhh-hcccccCCC
Q 018933 241 ---WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKY-NVENPFDWME-FISLQGKAN 315 (348)
Q Consensus 241 ---~~~i~~l~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y-~~~nP~~w~~-~~~~~~~~n 315 (348)
.++|++++++||++|++|+.++++.+++||+.+++++||+|+||+||.+||++++| +++||+|||+ ..+..+++|
T Consensus 272 ~~~~~~v~~l~~eav~~E~~~~~~~~~~~i~Gl~~~~~~~Yi~y~AnrrL~~LG~~~~y~~~~nP~~wm~~~~~~~~~tn 351 (369)
T PRK07209 272 AEFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKN 351 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcHhHHHHHhcccccCc
Confidence 47899999999999999999999989999999999999999999999999999999 7899999995 456678899
Q ss_pred ccccccccccccccc
Q 018933 316 FFERRVGDYQKASVM 330 (348)
Q Consensus 316 FFE~~~t~Y~~~~~~ 330 (348)
|||+|||+|+|++.+
T Consensus 352 FFE~rvt~Y~~~~~~ 366 (369)
T PRK07209 352 FFETRVIEYQTGGAL 366 (369)
T ss_pred ccccchhhhhcccCc
Confidence 999999999998754
No 5
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=7.3e-75 Score=556.60 Aligned_cols=299 Identities=25% Similarity=0.380 Sum_probs=278.7
Q ss_pred cccccC-CCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018933 27 PILMEQ-NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARF 105 (348)
Q Consensus 27 ~il~~~-~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~ 105 (348)
+|++|+ .++.+++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+
T Consensus 2 ~~~~g~~~~~~~~~~~~y~~~~~~y~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~ 81 (324)
T PRK09614 2 KIIGGNTYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNL 81 (324)
T ss_pred CCcCCCCcccccCCCcccHHHHHHHHHHHhCCCCCccccccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 467776 5678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcC--chHHHHHHHHH
Q 018933 106 LNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVGF 183 (348)
Q Consensus 106 ~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~~ 183 (348)
.+.++.||+++|+++|+++|+||+++||+++++++ +++++.++|+++.++|++++|++|+.++++. ...+.++++++
T Consensus 82 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~-~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~ 160 (324)
T PRK09614 82 MPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLC-SPEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVAS 160 (324)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999995 4556688999999999999999999999974 23578888989
Q ss_pred HHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHH
Q 018933 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIET 256 (348)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~-------~~i~~l~~eav~~E~ 256 (348)
+++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.+. ++|++++++||++|+
T Consensus 161 ~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~~v~~l~~~ave~E~ 240 (324)
T PRK09614 161 VFLEGFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEE 240 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877663 689999999999999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCCcchhhhccc--ccCCCcccccccccccccc
Q 018933 257 QFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYN--VENPFDWMEFISL--QGKANFFERRVGDYQKASV 329 (348)
Q Consensus 257 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~--~~nP~~w~~~~~~--~~~~nFFE~~~t~Y~~~~~ 329 (348)
+|++++++ ++| +.+++++||+|+||+||++||++|+|+ ++||+|||+.++. .+++||||+++++|+++++
T Consensus 241 ~~~~~~~~--~~G-~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~np~~w~~~~~~~~~~~~nFFe~~~~~Y~~~~~ 314 (324)
T PRK09614 241 AYTELLYD--IVG-LAEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADENHDFFEGKGTSYVKGAT 314 (324)
T ss_pred HHHHHHHC--cCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCChHHHHHhccCCCeecCCCcCCccceeeccc
Confidence 99999997 999 999999999999999999999999995 7899999987743 3588999999999999864
No 6
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1e-74 Score=563.46 Aligned_cols=310 Identities=23% Similarity=0.344 Sum_probs=282.7
Q ss_pred cccCccccccCCCce-eeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 018933 22 QEDQEPILMEQNQRF-CMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100 (348)
Q Consensus 22 ~~~~e~il~~~~~~~-~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~ 100 (348)
...++|||+|++.++ .+.|++|||+|++||++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|+++
T Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~y~~~~~lyk~~~~~fW~peEv~ls~D~~dw~~Lt~~Er~~~~~~L~~lt~lDs~q~~~ 91 (376)
T PRK09101 12 DQLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRS 91 (376)
T ss_pred ccccCCccCCCCccccccCchhhHHHHHHHHHHHhCCCCcccccccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445699999997654 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCc-------
Q 018933 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS------- 173 (348)
Q Consensus 101 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~------- 173 (348)
+...+++.+++||+++|+++|+++|+||+++||+|+++++.+|+ ++|+++.++|.+++|++|+.+++++.
T Consensus 92 ~~~~~~~~i~~pE~~~~~~~q~~~E~IHs~sYs~il~tl~~~~~---e~f~~~~~~~~i~~K~~~i~~~y~~~~~~~~~~ 168 (376)
T PRK09101 92 PNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEEILKRAKDISSYYDDLIEMTSYY 168 (376)
T ss_pred hHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 98889999999999999999999999999999999999987775 69999999999999999999987531
Q ss_pred -----------------------hHHHHHHHHHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHH
Q 018933 174 -----------------------DSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 230 (348)
Q Consensus 174 -----------------------~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~ 230 (348)
..+++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~ 248 (376)
T PRK09101 169 HLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQH 248 (376)
T ss_pred hhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 224556788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh--hhh---------HHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 018933 231 LYSLLRK--RLH---------WQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNV 298 (348)
Q Consensus 231 l~~~l~~--e~~---------~~~i~~l~~eav~~E~~~~~~~~-~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~ 298 (348)
+++.++. +.| .++|++++++||++|++|+++++ +++++||+.+.+++||+|+||+||.+||++|+|++
T Consensus 249 l~~~l~~~~e~p~~~~~~~~~~~~v~~l~~eave~E~~~~~~l~~~~~i~Gl~~~~~~~Yi~Y~An~rL~~LG~~~~f~~ 328 (376)
T PRK09101 249 MLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQT 328 (376)
T ss_pred HHHHHhhcccChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 9999984 222 35899999999999999999999 56799999999999999999999999999999986
Q ss_pred -CCCcchhhhc-cccc-CCCccccccccccccccccccc
Q 018933 299 -ENPFDWMEFI-SLQG-KANFFERRVGDYQKASVMSSLQ 334 (348)
Q Consensus 299 -~nP~~w~~~~-~~~~-~~nFFE~~~t~Y~~~~~~~~~~ 334 (348)
+||+|||+.+ +..+ ++||||+++++|++++...+-+
T Consensus 329 ~~nP~~wm~~~~~~~~~~~nffE~~~~~Y~~~~~~~~~~ 367 (376)
T PRK09101 329 RSNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSEVD 367 (376)
T ss_pred CCCCHHHHHHHhcCCccccccccccHHHHhhccCcccCC
Confidence 7999999765 4444 7899999999999998766543
No 7
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-74 Score=550.51 Aligned_cols=306 Identities=33% Similarity=0.546 Sum_probs=276.1
Q ss_pred CccccccC-CCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018933 25 QEPILMEQ-NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAA 103 (348)
Q Consensus 25 ~e~il~~~-~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~ 103 (348)
...++.|+ .+..+++|++|||+|.+|+++.+|||.|+|||+++|+.||++||+.||+++.++|++|+++|++|++++.+
T Consensus 15 ~~~~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~~dw~~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~~~ 94 (348)
T COG0208 15 EPKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWKKLSDDEKDLIIRVLAFLTLLDSIQANNGVP 94 (348)
T ss_pred ccccccCCccccccCCccccHHHHHHHHHHHhcCCCchhcCccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33455554 56689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH-HHHhhcHHHHHHHHHHHHHhcC------c--h
Q 018933 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLF-NAIENIPCVAQKAKWALDWIHS------S--D 174 (348)
Q Consensus 104 ~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~-~~~~~~p~l~~k~~~i~~~~~~------~--~ 174 (348)
.+.++++.||+++|+++|++||+||++|||+|+++++.++ +..++| +|+.++|.+++|++++...|++ + .
T Consensus 95 ~~~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e-~~~~~~~~~~~~~~~l~~k~~~i~~~y~~~~~~~~~~~~ 173 (348)
T COG0208 95 ALSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTE-DEDEVFDDWVATNEILQEKAEIILRYYDDLGDDPDDPLE 173 (348)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCcccchH
Confidence 9999999999999999999999999999999999997544 445555 7778999999999999987762 1 2
Q ss_pred HH-HHHHHHHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh-------HHHHHH
Q 018933 175 SF-AERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKVHH 246 (348)
Q Consensus 175 ~~-~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~-------~~~i~~ 246 (348)
.. .+++++.+++||++|||||+++++|++||+|||++++|++|.|||++|+.|++.+++.++.+.| ++.+++
T Consensus 174 ~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~~~ 253 (348)
T COG0208 174 EFLLKLVVASVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKDEIYD 253 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhHHHHHHHHH
Confidence 23 4444555789999999999999999999999999999999999999999999999999987754 467999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCcchhhhc-ccccCCCccccccccc
Q 018933 247 MVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE-NPFDWMEFI-SLQGKANFFERRVGDY 324 (348)
Q Consensus 247 l~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~-nP~~w~~~~-~~~~~~nFFE~~~t~Y 324 (348)
++.+||++|++|+.++++ +++||+.+.+++||+|+||+||++||++|+|+.. ||+||++.+ +..+++||||+++++|
T Consensus 254 l~~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~~lG~~~~y~~~~NP~~~~~~~~~~~~~~dFFe~~~ssY 332 (348)
T COG0208 254 LFKEAVELEKEYAEYLYP-GILGLTEDLVKQYIRYNANKRLQNLGLEPLYPAEENPIPWIELSLSADEKTDFFEGRVSSY 332 (348)
T ss_pred HHHHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHhhccccccCCccccccchH
Confidence 999999999999999998 4999999999999999999999999999999866 999999885 4468999999999999
Q ss_pred cccccccc
Q 018933 325 QKASVMSS 332 (348)
Q Consensus 325 ~~~~~~~~ 332 (348)
+||+....
T Consensus 333 ~~~~~~~~ 340 (348)
T COG0208 333 QKGSVASE 340 (348)
T ss_pred HhhhcccC
Confidence 99985544
No 8
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=8.8e-72 Score=549.28 Aligned_cols=311 Identities=26% Similarity=0.422 Sum_probs=282.0
Q ss_pred hhhcccccccCccccccCCCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHh--cCCHHHHHHHHHHHHHHHH
Q 018933 15 REQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE--RLLDSEKHFISHVLAFFAA 92 (348)
Q Consensus 15 ~~~~~~~~~~~e~il~~~~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~--~L~~~er~~~~~~la~l~~ 92 (348)
+.-+|.+...+-+|+.+ +.+++|++|||+|++|+++.++||+|+|||+++|+.||+ +||+.||++++++|++|++
T Consensus 80 ~~g~l~~~~~~~~~~~~---~~~~~p~kY~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~~~Lt~~Er~~~~~il~~~~~ 156 (410)
T PRK12759 80 RAGEVIARVKGSSLTTF---SKTYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNGKITKVEKEYITNILRLFTQ 156 (410)
T ss_pred HhCCHHHHhcCCccccc---ccccCCCccHHHHHHHHHHHHcCCCccccchhhhHHHhhhcCCCHHHHHHHHHHHHHHHH
Confidence 55566666667666654 458899999999999999999999999999999999996 6999999999999999999
Q ss_pred HHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcC
Q 018933 93 SDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS 172 (348)
Q Consensus 93 ~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~ 172 (348)
+|++|++++.+.+++.++.||+++|+++|+++|+||+++||+|+++++.+++ .|+.+.++|.+++|++|+.++...
T Consensus 157 lD~~v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~~~~----~~~~~~~~~~~~~k~~~~~~~~~~ 232 (410)
T PRK12759 157 SDVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDS----EYHAFLEYKAMTDKIDFMMDADPT 232 (410)
T ss_pred HHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHhhHHHHHHHHHHHhcCcc
Confidence 9999999998899999999999999999999999999999999999976543 499999999999999999876643
Q ss_pred -chHHHHHHHHHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh-------HHHH
Q 018933 173 -SDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKV 244 (348)
Q Consensus 173 -~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~-------~~~i 244 (348)
...+++++++++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.| .+.|
T Consensus 233 ~~~~~~~~lv~~~~lEgi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~v 312 (410)
T PRK12759 233 TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEI 312 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcChHHHHHH
Confidence 34578889988999999999999999999999999999999999999999999999999999976554 4789
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCcchhhhccc-ccCCCcccccc
Q 018933 245 HHMVHEAVEIETQFVCEALPC-ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNV-ENPFDWMEFISL-QGKANFFERRV 321 (348)
Q Consensus 245 ~~l~~eav~~E~~~~~~~~~~-~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~-~nP~~w~~~~~~-~~~~nFFE~~~ 321 (348)
++++++||++|++|++++++. .++||+.+++++||+|+||+||++||++|+|++ +||+|||+.... .+++||||+++
T Consensus 313 ~~~~~eave~E~~~~~~~~~~~~i~Gl~~~~~~~Yiky~an~~L~~LG~~~~f~~~~nP~~w~~~~~~~~~~~nFFE~rv 392 (410)
T PRK12759 313 YLMASKAVELEDRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRV 392 (410)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCChhHHHHHhccccccCCccccH
Confidence 999999999999999999964 699999999999999999999999999999996 799999986543 46899999999
Q ss_pred ccccccccccc
Q 018933 322 GDYQKASVMSS 332 (348)
Q Consensus 322 t~Y~~~~~~~~ 332 (348)
|+|++++.+.+
T Consensus 393 t~Y~~~~~~~~ 403 (410)
T PRK12759 393 TEYEVAGLTGS 403 (410)
T ss_pred HHHhhcccccc
Confidence 99999976543
No 9
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=2e-71 Score=530.53 Aligned_cols=290 Identities=19% Similarity=0.288 Sum_probs=266.6
Q ss_pred CceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHH
Q 018933 34 QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPE 113 (348)
Q Consensus 34 ~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E 113 (348)
...+++|++|||.+.+|+++.++||+|+|||+++|+.||.+||+.||++++++|++|+++|++|++++.+.+.+.++.||
T Consensus 12 ~~~n~n~~~~~~~~~~~~~~~~nfW~peEi~l~~D~~dw~~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~~~~~~pe 91 (324)
T PRK13966 12 SAINWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTPH 91 (324)
T ss_pred ccccCCCcccHHHHHHHHHHHhCCCCccccCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999998878999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhHHHHHh
Q 018933 114 ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSG 193 (348)
Q Consensus 114 ~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s 193 (348)
+++|+++|++||+||+++||+|+++++ +++++.++|+++.++|.|++|++|+.++++++. .++++++++++||++|||
T Consensus 92 ~~~~~~~q~~~E~IHsesYs~il~tl~-~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~-~~~~~va~~~lEgi~Fys 169 (324)
T PRK13966 92 EEAVLTNIAFMESVHAKSYSQIFSTLC-STAEIDDAFRWSEENRNLQRKAEIVLQYYRGDE-PLKRKVASTLLESFLFYS 169 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999997 567888999999999999999999999998765 479999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhh---h----HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018933 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL---H----WQKVHHMVHEAVEIETQFVCEALPCA 266 (348)
Q Consensus 194 ~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~---~----~~~i~~l~~eav~~E~~~~~~~~~~~ 266 (348)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+..+. . .+.+++++++||++|++|+.+++ +
T Consensus 170 gF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~~~~~~i~~l~~~av~~E~e~~~~~~--~ 247 (324)
T PRK13966 170 GFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVEYTQDLY--D 247 (324)
T ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 9999999999999999999999999999999999999999765432 2 24679999999999999999998 4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCcchhhhcccc--cCCCcccccccccccccc
Q 018933 267 LIGMNSSLMSQYIKFVADRLLVALGCQRKYNV----ENPFDWMEFISLQ--GKANFFERRVGDYQKASV 329 (348)
Q Consensus 267 ~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~----~nP~~w~~~~~~~--~~~nFFE~~~t~Y~~~~~ 329 (348)
++||+. ++++||+|+||+||++||++|+|++ .||+ |+...+.. +++||||+|||+|+||++
T Consensus 248 ~~Gl~~-~v~~Yi~y~An~~L~~lG~e~~f~~~~~~~nP~-~~~~~~~~~~~~~dFFe~r~t~Y~k~~~ 314 (324)
T PRK13966 248 EVGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPA-ILSALSPNADENHDFFSGSGSSYVIGKA 314 (324)
T ss_pred cCCChH-HHHHHHHHHHHHHHHHCCCCCCCCCCcCCCCCh-hHHhhccccccccCCCCCCCcccccccc
Confidence 789986 6999999999999999999999975 5998 56554543 688999999999999854
No 10
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=100.00 E-value=4.5e-69 Score=507.24 Aligned_cols=278 Identities=41% Similarity=0.764 Sum_probs=260.6
Q ss_pred cccccCCCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018933 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFL 106 (348)
Q Consensus 27 ~il~~~~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~ 106 (348)
+||..|+.+| +|++||++|++|++++++||.|+|||+++|+.+|.+||+.||++++++|++|+.+|++|++++.+.++
T Consensus 2 ~~l~~~~~~~--~pi~y~~~~~ly~k~~~~fW~peEi~~~~D~~~~~~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~ 79 (281)
T PF00268_consen 2 PLLKENAINW--NPIKYPWFWDLYKKAESNFWTPEEIDMSKDIKDWKKLSEEEREAYKRILAFFAQLDSLVSENLLPNIM 79 (281)
T ss_dssp TTTSCGTTCT--TS-SSHHHHHHHHHHHHT---GGGS-GGGHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHhC--CCCCCHHHHHHHHHHHhCCCCchhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Confidence 6888999888 99999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHHHh
Q 018933 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (348)
Q Consensus 107 ~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (348)
+.+++||+++|+++|+++|+||+++||+++++++.|+.++.++|+++.++|.+++|++++.++++++.++.+++++++++
T Consensus 80 ~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~~~~~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 159 (281)
T PF00268_consen 80 PEITSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKERDEIFDWVEEDPELQKKLDWIEKWYEDNDSLAEKLVASVIL 159 (281)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHhhHHHHHHhhchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999987888899999999999999999999999998777788999999999
Q ss_pred hHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 018933 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR--KRLHWQKVHHMVHEAVEIETQFVCEALP 264 (348)
Q Consensus 187 Egi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~--~e~~~~~i~~l~~eav~~E~~~~~~~~~ 264 (348)
|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.|+ .++.++.|++++++||++|.+|++..++
T Consensus 160 Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~i~~l~~eav~~E~~~~~~~~~ 239 (281)
T PF00268_consen 160 EGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEENKPEEEEIYELFDEAVELEIEFIDDILP 239 (281)
T ss_dssp HHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 5677899999999999999999998888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhh
Q 018933 265 CALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWME 306 (348)
Q Consensus 265 ~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~nP~~w~~ 306 (348)
+++.|++.+++++||+|+||+||.+||++|+|++.||.+||+
T Consensus 240 ~~~~gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~~~~~ 281 (281)
T PF00268_consen 240 GDIIGLNKEDIKQYIKYNANRRLRNLGFEPIYNVENPFPWME 281 (281)
T ss_dssp GGGTTBSHHHHHHHHHHHHHHHHHHTTS--SSTTCCSSTTHC
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Confidence 889999999999999999999999999999999999999985
No 11
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=9.3e-69 Score=514.37 Aligned_cols=290 Identities=18% Similarity=0.296 Sum_probs=258.8
Q ss_pred CceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHH
Q 018933 34 QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPE 113 (348)
Q Consensus 34 ~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E 113 (348)
+..++.|++|||++++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|+.++.....+....++
T Consensus 23 ~~~n~~~~~~~~~~~~~~~~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~~e~~~~~ 102 (335)
T PRK13965 23 RSINWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRSLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTDH 102 (335)
T ss_pred ccccccCcccHHHHHHHHHHHHcCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchH
Confidence 34688899999999999999999999999999999999999999999999999999999999999776554556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhHHHHHh
Q 018933 114 ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSG 193 (348)
Q Consensus 114 ~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s 193 (348)
.++|+++|+++|+||+++||+++++++.++ ++.++|+++.++|.+++|++|+.++++++. .++++++++++||++|||
T Consensus 103 e~~~l~~q~~~E~IHs~sYs~il~tl~~~~-~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~-~~~~~va~~~lEGi~Fys 180 (335)
T PRK13965 103 EQVIYTNFAFMVAIHARSYGTIFSTLCSSE-QIEEAHEWVVSTESLQRRARVLIPYYTGDD-PLKSKVAAAMMPGFLLYG 180 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHhcCHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999997655 677899999999999999999999997654 589999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHhcCCC
Q 018933 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALPCA 266 (348)
Q Consensus 194 ~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~-------~~i~~l~~eav~~E~~~~~~~~~~~ 266 (348)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+..++++ +.|++++++||++|++|+.++++
T Consensus 181 gFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~~~~~~~~e~~~~~~~~v~~l~~eav~~E~~~~~~~~~-- 258 (335)
T PRK13965 181 GFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLEKAYLRELYA-- 258 (335)
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999876554432 56999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CC--cchhhhcccccCCCcccccccccccccc
Q 018933 267 LIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE----NP--FDWMEFISLQGKANFFERRVGDYQKASV 329 (348)
Q Consensus 267 ~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~----nP--~~w~~~~~~~~~~nFFE~~~t~Y~~~~~ 329 (348)
.+|++.+ +++||+|+||+||++||++|+|++. || ++|++. ...+++||||+|+|+|+||++
T Consensus 259 ~~g~~~~-~~~Yi~y~an~~L~~LG~~~~f~~~~~~~~p~~~~~~~~-~~~~~~dFFe~~~t~Y~~~~~ 325 (335)
T PRK13965 259 GFDLAED-AIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQLSA-RADENHDFFSGNGSSYVMGIT 325 (335)
T ss_pred CCCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhCc-cccccCCCCCCCCCcCeeccc
Confidence 6899866 9999999999999999999999754 45 334442 235789999999999999854
No 12
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=100.00 E-value=1.6e-66 Score=491.45 Aligned_cols=272 Identities=55% Similarity=0.943 Sum_probs=260.1
Q ss_pred eeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHH
Q 018933 36 FCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEAR 115 (348)
Q Consensus 36 ~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~ 115 (348)
++++|++|||+|++|++++++||.|+|||+++|+.+|++||+.||++++++|++|+.+|++|++++.+.+.+.+++||++
T Consensus 1 ~~~~~~~y~~~~~ly~~~~~~~W~p~ei~~~~D~~~~~~l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~~~~e~~ 80 (288)
T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEKLTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIPEAR 80 (288)
T ss_pred CCCCccccHHHHHHHHHHHHcCCChhhcchhhhHHHHhHCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcChHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHhhHHH
Q 018933 116 AFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS-----DSFAERLVGFACVEGIF 190 (348)
Q Consensus 116 ~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~-----~~~~~~lv~~~~lEgi~ 190 (348)
+|+++|+++|+||+++||+++++++.++ ++.++|+++.++|.+++|++|+.+++++. +++++++++++++||++
T Consensus 81 ~~~~~q~~~E~iH~e~Ys~il~~l~~~~-e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~~~lv~~~~lEgi~ 159 (288)
T cd01049 81 AFYGFQAFMENIHSESYSYILDTLGKDE-ERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFAERLVAFAILEGIF 159 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc-cHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998776 78899999999999999999999999743 57999999999999999
Q ss_pred HHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHhc
Q 018933 191 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR-------LHWQKVHHMVHEAVEIETQFVCEAL 263 (348)
Q Consensus 191 f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e-------~~~~~i~~l~~eav~~E~~~~~~~~ 263 (348)
|+|||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+ ...+.|++++++||++|++|+++++
T Consensus 160 f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~~av~~E~~~~~~~~ 239 (288)
T cd01049 160 FYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVELEKEFARDLL 239 (288)
T ss_pred HHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999877 3468899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCCcchhhhc
Q 018933 264 PCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNV--ENPFDWMEFI 308 (348)
Q Consensus 264 ~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~--~nP~~w~~~~ 308 (348)
+..+.|++.+++++||+|+||+||.+||++++|++ .||+|||+.+
T Consensus 240 ~~~~~g~~~~~~~~yi~y~an~~l~~lG~~~~f~~~~~nP~~~~~~~ 286 (288)
T cd01049 240 PDGILGLNKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDWMELI 286 (288)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence 88899999999999999999999999999999987 8999999865
No 13
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=2.9e-66 Score=494.99 Aligned_cols=292 Identities=18% Similarity=0.286 Sum_probs=261.1
Q ss_pred CCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChH
Q 018933 33 NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIP 112 (348)
Q Consensus 33 ~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~ 112 (348)
....++..++|++..++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|+.++.+.+...++.|
T Consensus 9 ~~~~nwn~~~~~~~~~~~~~~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~~~~ 88 (322)
T PRK13967 9 VHAINWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAVTP 88 (322)
T ss_pred cccCCCCCccchhhHHHHHHHHhCCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCCH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999887789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhHHHHH
Q 018933 113 EARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFS 192 (348)
Q Consensus 113 E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~ 192 (348)
|+++|+++|+++|+||+++||+|+++++. ++++.++|+++.++|.+++|++|+.+++++. ...+++++++++||++||
T Consensus 89 e~~~~l~~~~~~E~iHs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~-~~~~~~v~~~~lEgi~Fy 166 (322)
T PRK13967 89 HEEAVLTNMAFMESVHAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRKAQIIVDYYRGD-DALKRKASSVMLESFLFY 166 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999964 6677899999999999999999999999864 457888999999999999
Q ss_pred hHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHhcCC
Q 018933 193 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKVHHMVHEAVEIETQFVCEALPC 265 (348)
Q Consensus 193 s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~-------~~~i~~l~~eav~~E~~~~~~~~~~ 265 (348)
|||+++++|+++|+|||++++|++|.|||++|+.|++.+++....+++ .+.+.+++.+++++|++|+.+++
T Consensus 167 sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~~~l~~~e~~~~~~~~~~l~~~~~~~E~~~~~~~~-- 244 (322)
T PRK13967 167 SGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLYANEIDYAHDLY-- 244 (322)
T ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999987744433322 24588999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCc-chhh-hccc--ccCCCcccccccccccccc
Q 018933 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE-NPF-DWME-FISL--QGKANFFERRVGDYQKASV 329 (348)
Q Consensus 266 ~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~-nP~-~w~~-~~~~--~~~~nFFE~~~t~Y~~~~~ 329 (348)
+++||+.+ +++||+|+||+||++||++|+|++. +|. ||+. ..+. .+++||||+|+|+|+|+++
T Consensus 245 ~~~Gl~~~-v~~yi~Y~an~rL~~LGl~~~f~~~~~~~nP~~~~~~~~~~~~~~dFFe~r~t~Y~k~~~ 312 (322)
T PRK13967 245 DELGWTDD-VLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAALDPGAGENHDFFSGSGSSYVMGTH 312 (322)
T ss_pred CcCCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhccccCccCCCCCCCCccccccCc
Confidence 58999865 8899999999999999999999753 554 6652 2232 3588999999999999854
No 14
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=100.00 E-value=8.4e-50 Score=375.81 Aligned_cols=249 Identities=19% Similarity=0.239 Sum_probs=209.6
Q ss_pred HHHHHHHHhcC-CcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--hcCChHHHHHHHHHHH
Q 018933 46 VWEMYKKAQAS-FWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFL--NDIQIPEARAFYGFQI 122 (348)
Q Consensus 46 ~~~lykk~~~~-fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~--~~~~~~E~~~~~~~q~ 122 (348)
.+++|+++.++ ||+|+|||+++|+.||++||+.||++++++|++|+.+|++|+.++.+.+. ...+.||+++|+++|+
T Consensus 9 ~~~ly~~~~~~~~W~~~eid~s~D~~~w~~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l~~q~ 88 (280)
T cd07911 9 PMKLFEKGKRKGFWNPADIDFSQDREDWEQLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQFL 88 (280)
T ss_pred hHHHHHHHHccCCCCHHHcCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 46899999999 99999999999999999999999999999999999999999999987665 4567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcC--chHHHHHHHH-HHHhhHHHHHhHHHHHH
Q 018933 123 AMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVG-FACVEGIFFSGSFCAIF 199 (348)
Q Consensus 123 ~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~-~~~lEgi~f~s~F~~~~ 199 (348)
++|++|+++||+++++++.+++ .+...++....+.+.++..+....++. +..++++.+. ..++||++|||||++++
T Consensus 89 ~~EaiH~esYs~~l~tl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGilf~sgF~~~~ 167 (280)
T cd07911 89 FEEAKHTDFFRRWLDAVGVSDD-LSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVLAETGYYAWR 167 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc-hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976543 223344444444455454554544443 3456664443 46899999999999977
Q ss_pred -HHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCHH
Q 018933 200 -WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW--QKVHHMVHEAVEIETQFVCEAL---PCALIGMNSS 273 (348)
Q Consensus 200 -~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~--~~i~~l~~eav~~E~~~~~~~~---~~~~~Gl~~~ 273 (348)
+++++|+|||++++|++|+|||++|+.||+.+++.++.+.|. +.+.++++++++.|.++++.+. +..++|++.+
T Consensus 168 ~~l~~~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~e~~~~l~~~av~~~~~~~~~~~~~~~g~~~~ 247 (280)
T cd07911 168 TICEKRGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANWDVFEERMNELVPHALGLIDEIFELYDEMPFGLDPD 247 (280)
T ss_pred HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCHH
Confidence 799999999999999999999999999999999999877542 4577888888888888777664 4569999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC
Q 018933 274 LMSQYIKFVADRLLVALGCQRK 295 (348)
Q Consensus 274 ~~~~yi~y~an~~L~~lG~~~~ 295 (348)
++++|++|.||+||..||++|-
T Consensus 248 ~~~~Y~~~~a~~rL~~lg~~~~ 269 (280)
T cd07911 248 ELMQYAVDQFQRRLGYIERARG 269 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999984
No 15
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=7.5e-50 Score=380.39 Aligned_cols=243 Identities=19% Similarity=0.285 Sum_probs=214.9
Q ss_pred HHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCh---HHHHHHHHHHHH
Q 018933 47 WEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQI---PEARAFYGFQIA 123 (348)
Q Consensus 47 ~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~---~E~~~~~~~q~~ 123 (348)
.++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|+.++.+ +...++. ||+++|+++|++
T Consensus 28 ~~ly~~~~~~fW~peEidls~D~~dw~~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~-~i~~~~~~~~~e~~~~l~~q~~ 106 (311)
T PRK08326 28 MKLFAKGNAKFWNPADIDFSRDAEDWEKLSDEERDYATRLCAQFIAGEEAVTLDIQP-LISAMAAEGRLEDEMYLTQFAF 106 (311)
T ss_pred HHHHHHHHHcCCCHHhcCccchHHHHHhCCHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHhhccccCCHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999975 5556555 999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHH----HHHHHhc---CchHHHHHHHHH-HHhhHHHHHhHH
Q 018933 124 MENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAK----WALDWIH---SSDSFAERLVGF-ACVEGIFFSGSF 195 (348)
Q Consensus 124 ~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~----~i~~~~~---~~~~~~~~lv~~-~~lEgi~f~s~F 195 (348)
+|++|+++|++++++++.+. ++++++.++|.+++|.. +....+. +++.+++++++| +++|||+|||||
T Consensus 107 ~EaiH~e~Y~~~le~l~~~~----~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~iEGi~f~sgF 182 (311)
T PRK08326 107 EEAKHTEAFRRWFDAVGVTE----DLSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHVVEGVLAETGY 182 (311)
T ss_pred HHHHHHHHHHHHHHHhCCCH----HHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996443 35777778899999853 4444443 345678888876 479999999999
Q ss_pred HHH-HHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018933 196 CAI-FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH------WQKVHHMVHEAVEIETQFVCEALPCALI 268 (348)
Q Consensus 196 ~~~-~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~------~~~i~~l~~eav~~E~~~~~~~~~~~~~ 268 (348)
+++ ++++++|+|||++++|++|.|||++|+.||+.+++.++.+.| .+.+.+++.+|++. ++|+.+.++..++
T Consensus 183 ~~~~~~l~~~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~~~i~el~~~av~~-~~~~~~~~~~~i~ 261 (311)
T PRK08326 183 YAWRKICVTRGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNWDVFEERMNELLPLALGL-IDEIFALYGDQIP 261 (311)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHH-HHHHHHhccCccc
Confidence 997 699999999999999999999999999999999999987654 26788999999995 8999988877786
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 018933 269 -GMNSSLMSQYIKFVADRLLVALGCQRK 295 (348)
Q Consensus 269 -Gl~~~~~~~yi~y~an~~L~~lG~~~~ 295 (348)
|++.+++.+||+|+||+||+.||+...
T Consensus 262 ~Gl~~~~~~~Yi~y~an~RL~~iG~~~~ 289 (311)
T PRK08326 262 FELSNDEFVDYAADRGQRRLGAIERARG 289 (311)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999874
No 16
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=98.47 E-value=2.7e-05 Score=74.26 Aligned_cols=178 Identities=17% Similarity=0.080 Sum_probs=98.4
Q ss_pred cCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHh----cCChHHHHHHHHHHHHHH
Q 018933 55 ASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA-----ARFLN----DIQIPEARAFYGFQIAME 125 (348)
Q Consensus 55 ~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~-----~~~~~----~~~~~E~~~~~~~q~~~E 125 (348)
...|.|.+...--.-.-|..||+++|..+.+--..-.....+..+... ..++. .......+.+...++.+|
T Consensus 46 ~~~~~p~~~~pl~gtp~~~~l~~~~r~~l~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE 125 (304)
T PF11583_consen 46 DRPWLPPELLPLYGTPLWERLSEEQRIELLRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADE 125 (304)
T ss_dssp TS-SS-GGGSTTTT-HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHH
T ss_pred cccCCCcccCccCCCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 356777666666666789999999999777653333333344443321 23333 223566777888889999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHH-HHhhHHHHHhHHHHHHHHHhc
Q 018933 126 NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKR 204 (348)
Q Consensus 126 ~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~ 204 (348)
+.|+.+|.++++.++... .+-. ...-+........+..... ........+++ .+.|.+.- .+.-. .....
T Consensus 126 ~rH~~mf~~~~~~~~~~~----~l~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~lv~Ee~i~--~~~~~-~~~D~ 196 (304)
T PF11583_consen 126 ARHSLMFARAINRTGRRR----GLAP-LPPPYPPRRLLRRLARLLP-PWERGLLFFAFALVAEEIID--AYQRE-IARDE 196 (304)
T ss_dssp HHHHHHHHHHHHHHHHHT----T-----S--HHHHHHHHHHHTS-S-HHHHHHHHHHHHHHHHHSBH--HHHHH-HHT-S
T ss_pred HHHHHHHHHHHHHHhhhc----Cccc-CCCCCchHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHH--HHHHH-hhcCC
Confidence 999999999999885100 0000 1111222222222232221 11111122222 34676532 11111 12334
Q ss_pred CCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhH
Q 018933 205 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW 241 (348)
Q Consensus 205 g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~ 241 (348)
++-|-+.++++...+||++|+.|+..++.....+.++
T Consensus 197 ~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~ 233 (304)
T PF11583_consen 197 TIQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSP 233 (304)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-H
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 4668888888999999999999999999988877664
No 17
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=97.81 E-value=0.011 Score=59.67 Aligned_cols=220 Identities=14% Similarity=0.061 Sum_probs=131.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Q 018933 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKD-SKEKHRLF 150 (348)
Q Consensus 72 ~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d-~~e~~~~~ 150 (348)
+..+++.-.++++..++.+..++-...... ..+....++++++..+.+|+..|.+|+..=.+....+.++ |+- ..--
T Consensus 68 ~~~~dp~W~~~Lk~~~~a~~~~Ey~a~~~~-a~~~R~a~s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GF-d~~~ 145 (465)
T cd01057 68 YEKVDPRWVEAMKLFLGAITPGEYAAVRGM-AMLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGF-DWAQ 145 (465)
T ss_pred cccCCHHHHHHHHHHhccccHHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-ChHH
Confidence 456899999999999999888885554444 3567889999999999999999999999877776665431 110 0001
Q ss_pred HHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHH-HhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHH
Q 018933 151 NAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (348)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~ 229 (348)
..+.++|..+.--..+.+.+.+ ...++.+++.. +.|.++=-.-|..+..++..+==..+..++.-|+.||++|...|.
T Consensus 146 ~~~~~~~~~~~~R~~~ed~~~t-~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD~~tptv~~S~QsDe~Rh~~~g~ 224 (465)
T cd01057 146 KAFHGNWYAGAAKRFFFDGFIT-GDAVEAALALQFVFETAFTNLLFVALASDAAANGDYATPTVFLSIQSDEARHMANGY 224 (465)
T ss_pred HHHhhCcHHHHHHHHHHHHHhc-CCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhHH
Confidence 2334666665433344333222 23568888875 568753222222223333222123455666778899999999999
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHH--------HhcCCCCCCCCHHHHHHHHHHHHHHHHHHc---CCCCC
Q 018933 230 LLYSLLRKRL-HWQKVHHMVHEAVEIETQFVC--------EALPCALIGMNSSLMSQYIKFVADRLLVAL---GCQRK 295 (348)
Q Consensus 230 ~l~~~l~~e~-~~~~i~~l~~eav~~E~~~~~--------~~~~~~~~Gl~~~~~~~yi~y~an~~L~~l---G~~~~ 295 (348)
.++..+.+.+ +...+..-++...-.=.+.+. |..+...... ++.+..||.-..-..+..| |++++
T Consensus 225 ~ll~~l~~Dp~N~~~lq~wld~w~wr~~~a~~~l~g~~~dY~~~~r~~s~-~e~~~~wi~~~~~~~~~~L~~~Gl~~P 301 (465)
T cd01057 225 PTLVLLENDPDNVPLLQRDLDKAFWRQHRLFDALVGMLMDYGTPKRVMSW-KEFWEEWIEEDFGSYFKDLEKYGLKKP 301 (465)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhhhhHHHHccCCcCcccH-HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9996555533 233344444433332222222 2122222111 3556666665555677777 99765
No 18
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=97.39 E-value=0.05 Score=49.99 Aligned_cols=162 Identities=17% Similarity=0.050 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHH
Q 018933 74 RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKEKHRLF 150 (348)
Q Consensus 74 ~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~---~d~~e~~~~~ 150 (348)
.|++.-++.++..++.+...+-....+. ..+....+.++++.++.+|++.|..|..--.+++..+. .++.--. =
T Consensus 66 ~l~~~w~~~l~~~~~~~~~~E~ga~~~~-a~~~r~~~~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~--k 142 (233)
T PF02332_consen 66 ALDPRWVEFLKRHLGPLRHAEYGAQMAS-AYIARFAPGTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAA--K 142 (233)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCT--H
T ss_pred cCCHHHHHHHHHHcCCcchHHHHHHHHH-HHHHhhcCcHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHH--H
Confidence 4699999999999999988886554444 35778899999999999999999999999998888874 2221000 2
Q ss_pred HHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHH-HhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHH
Q 018933 151 NAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (348)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~ 229 (348)
..+.++|..+---..+.+.+-.. ..++.+|+.. ++|+++.---|..+-..+..+==..+..++..+..||.+|...+.
T Consensus 143 ~~w~~~p~wq~~R~~vE~~~~~~-Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~ 221 (233)
T PF02332_consen 143 EAWLNDPAWQPLRRLVEDLLVTY-DWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGD 221 (233)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTSS-SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888776656666544322 3678888886 579986555555554444333346688888999999999999999
Q ss_pred HHHHHHHhhh
Q 018933 230 LLYSLLRKRL 239 (348)
Q Consensus 230 ~l~~~l~~e~ 239 (348)
.+++.+.++.
T Consensus 222 al~~~~~~~~ 231 (233)
T PF02332_consen 222 ALFKMALEDD 231 (233)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHhCC
Confidence 9999887654
No 19
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=97.17 E-value=0.057 Score=51.34 Aligned_cols=165 Identities=17% Similarity=0.022 Sum_probs=98.2
Q ss_pred hcCCcCccccCccc-------chHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHhcCC-----hHHH
Q 018933 54 QASFWTAEEVDLSQ-------DVQHWE----RLLDSEKHFISHVLAFFAASDGIVLENL---AARFLNDIQ-----IPEA 114 (348)
Q Consensus 54 ~~~fW~peeid~s~-------D~~d~~----~L~~~er~~~~~~la~l~~~d~~v~~~l---~~~~~~~~~-----~~E~ 114 (348)
...-|.|.++=+-. +..+|+ +||+..+.++...+ ++.+++ ...+..... .++.
T Consensus 24 ~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~--------itEd~LP~Y~~~L~~~f~~~~~~~~~w 95 (297)
T cd01050 24 VEKDWQPHDFLPDSASEDFDLDVKELRERAAELPDDARVALVGNL--------LTEEALPTYHSMLNRLFGLDDESPTAW 95 (297)
T ss_pred HhhccCCcccCCCCCCCChhhccccCchhhccCCHHHHHHHHHHH--------HHhhccHHHHHHHHHHcCcccccccHH
Confidence 34678887664433 556663 58887777665543 222222 122333322 2788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcHHHHHHHHHHHHHhcC--chHHHHHHHHHHHhhHHHH
Q 018933 115 RAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVGFACVEGIFF 191 (348)
Q Consensus 115 ~~~~~~q~~~E~iH~esYs~il~~~~~-d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~~~~lEgi~f 191 (348)
..|.....++|+.|+.+-..++-.-.. ||.. +.. .+...+.+-++- +.+....++.-++-|..-
T Consensus 96 ~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~---le~---------~~~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT- 162 (297)
T cd01050 96 ARWVRRWTAEENRHGDLLNKYLYLTGRVDPRA---LER---------TRQYLIGSGFDPGTDNSPYRGFVYTSFQELAT- 162 (297)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHH---HHH---------HHHHHHhCCCCCCCcccHHHHHHHHHHHHHHH-
Confidence 899999999999999999999875432 5532 111 111122222221 122234444334566542
Q ss_pred HhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh
Q 018933 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240 (348)
Q Consensus 192 ~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~ 240 (348)
.+++.-+-.+.+ .-=|-++++...|++||.+|..|...+...+....+
T Consensus 163 ~v~y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp 210 (297)
T cd01050 163 RISHRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDP 210 (297)
T ss_pred HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 233444444443 245889999999999999999999999987765444
No 20
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=97.16 E-value=0.019 Score=45.48 Aligned_cols=111 Identities=18% Similarity=0.033 Sum_probs=71.5
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 018933 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (348)
Q Consensus 104 ~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (348)
.+...+++++.+.++..++.+|..|.+....++..++.+|...... . .+.........+....+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~------------~-~~~~~~~~~~~~~~~~l~~~ 85 (130)
T cd00657 19 QLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH------------L-LAAYALPKTSDDPAEALRAA 85 (130)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------------H-HHhcccCCCccCHHHHHHHH
Confidence 4555677999999999999999999999999999987555321111 0 00111112223333444444
Q ss_pred HHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHH
Q 018933 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (348)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l 231 (348)
...|.. ....|..+. +...-+.+.++++.+.+||..|..++...
T Consensus 86 ~~~E~~-~~~~y~~~~---~~~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 86 LEVEAR-AIAAYRELI---EQADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHH-HHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567773 223333332 22226889999999999999999987654
No 21
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=97.14 E-value=0.14 Score=48.89 Aligned_cols=166 Identities=11% Similarity=-0.047 Sum_probs=112.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHH-HH
Q 018933 70 QHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKD-SKE-KH 147 (348)
Q Consensus 70 ~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d-~~e-~~ 147 (348)
..+..|++.-++.++..++-+...+-....+.. .+......+.++.++.+|++.|..|+..-+++...+.++ |.- -.
T Consensus 88 ~~~~~ld~~w~~~l~~~l~p~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~ 166 (304)
T cd01058 88 GLAEALSPEWREFLARYLGPLRHVEHGLQMANA-YVAQYAPSTTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGD 166 (304)
T ss_pred CChhhCCHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCch
Confidence 346679999999999999888887754444433 467788899999999999999999999988776555432 110 11
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHH-HhhHHHHHhHHHHHHHHH-hcCCCCchHHHHHHHHhhhhhhH
Q 018933 148 RLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHC 225 (348)
Q Consensus 148 ~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~-~~g~l~g~~~~i~~I~rDE~~H~ 225 (348)
.--..+.++|.-+---+.+.+.+-. ...++.+++.. ++|+++----|..+-..+ .+| =.-+..++..+..||.+|.
T Consensus 167 ~~k~~W~~dp~Wq~~R~~~E~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nG-D~~t~~l~~s~q~d~~Rh~ 244 (304)
T cd01058 167 AAKEAWEEDPAWQGLRELVEKLLVT-YDWGEAFVAQNLVFDPLVGELVRRELDRLAASNG-DTLTPLLTEFMLDDAQRHR 244 (304)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHHHHHH
Confidence 1223456777665422333333322 24678888875 679875433333333222 333 2457778899999999999
Q ss_pred HHHHHHHHHHHhh
Q 018933 226 DFACLLYSLLRKR 238 (348)
Q Consensus 226 ~f~~~l~~~l~~e 238 (348)
..+..++..+.++
T Consensus 245 ~~~~alvk~l~~~ 257 (304)
T cd01058 245 RWTDALVKTAAED 257 (304)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999988764
No 22
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=96.96 E-value=0.36 Score=45.74 Aligned_cols=202 Identities=13% Similarity=0.018 Sum_probs=133.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018933 75 LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 154 (348)
Q Consensus 75 L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~ 154 (348)
||+.-|..+.+.+..++-.+-+.+.-.. ......|..|.+..++..+-+|.=|+..+-.+..+++.+.+ +....+.
T Consensus 17 mp~~yr~~L~r~l~~~AdsEli~a~r~~-eW~~~AP~LeediAl~niaqDelGHar~ly~~a~~LG~~r~---ed~~a~~ 92 (289)
T TIGR02156 17 MPAAYRKTLIRQISQHAHSEIVGMLPEG-NWITRAPTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSRE---ELLDALL 92 (289)
T ss_pred CCHHHHHHHHHHHHHHhhHHHHhccccc-cHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH---HHHHHHh
Confidence 7888899999999888886655554333 45678888999999999999999999999999999965432 2222221
Q ss_pred hcHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhHHHHHhHHHHHH--HHHhcCCCCchHHHHHHHHhhhhhhHHHHHHH
Q 018933 155 NIPCVAQKAKWALDWIHS-SDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (348)
Q Consensus 155 ~~p~l~~k~~~i~~~~~~-~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l 231 (348)
. .+.++.+ ..+- ..+|+..++.- +|+.++.+.. .| .+.--+.++.+..+|++.|+.|...+...
T Consensus 93 r-----~~~~f~n-l~e~P~~dwA~tivr~------~l~D~~~~~~~~~L-~~SSy~plA~ia~Ki~KEe~yH~rh~~~w 159 (289)
T TIGR02156 93 T-----GKAKYSS-IFNYPTLTWADIGVIG------WLVDGAAIMNQTPL-CRCSYGPYSRAMVRICKEESFHQRQGYEI 159 (289)
T ss_pred c-----ChHhhcc-chhCCCCCHHHHHHHH------HHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222211 2221 22455444322 3445555543 22 34456789999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CCC-CCHHHHHHHHHHHHHHHHHHcCCCCC
Q 018933 232 YSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCA-------------LIG-MNSSLMSQYIKFVADRLLVALGCQRK 295 (348)
Q Consensus 232 ~~~l~~e~~~~~i~~l~~eav~~E~~~~~~~~~~~-------------~~G-l~~~~~~~yi~y~an~~L~~lG~~~~ 295 (348)
+..|.. ..++-++.+.+|++.=--++..+|+.+ -++ .+.+++.+--.-.....|..+|++-+
T Consensus 160 l~rL~~--GT~esr~r~Q~Ald~~Wp~~~emFg~~d~e~~~~~~~~~~Gi~~~~n~eLR~~w~~~v~~~l~~agL~~P 235 (289)
T TIGR02156 160 MLTLAR--GTQEQRQMAQDALNRWWWPSLMMFGPHDADSPNSGQSTKWKIKRNSNDELRQKFIDATVPQLESLGLTIP 235 (289)
T ss_pred HHHHHc--CCHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 888863 234556666677665555555555221 222 46667766555577788999998764
No 23
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=96.90 E-value=0.38 Score=45.07 Aligned_cols=207 Identities=12% Similarity=0.041 Sum_probs=126.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH-HH
Q 018933 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR-LF 150 (348)
Q Consensus 72 ~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~-~~ 150 (348)
-..+|+..+..+.+.+..++=.+-+.+..+.. .....|..|.+..++..+-+|.-|+..+-.++..+.+.....++ .|
T Consensus 7 ~~~~~~~~~~~L~~~l~~laD~elil~~r~~e-w~~~AP~LeediAl~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~ 85 (263)
T PF05138_consen 7 PDEMPEEYREALIRYLLRLADDELILGQRLSE-WCGHAPSLEEDIALANIAQDELGHARLLYRLLEELEGEGRDEDDLAF 85 (263)
T ss_dssp TSS--HHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHhChHHHhhhHHhH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHh
Confidence 34689999999999998888777666666654 56788999999999999999999999999999998332211111 12
Q ss_pred HHHhhcHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhHHHHHhHHHHHH--HHHhcCCCCchHHHHHHHHhhhhhhHHH
Q 018933 151 NAIENIPCVAQKAKWALDWIHS-SDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDF 227 (348)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~rDE~~H~~f 227 (348)
..-.. .. |+ ...++- ..++...++... |+..+..+. .| .+.--+.++.+.++|.++|..|..+
T Consensus 86 ~R~~~--~~--rn---~~l~e~p~~dwa~~v~r~~------l~d~~~~~~l~~l-~~ssy~pla~~a~k~~kEe~yH~~h 151 (263)
T PF05138_consen 86 LRDAR--EF--RN---LLLFEQPNGDWADTVARQF------LFDRAGKVLLEAL-ADSSYEPLAAIAAKILKEEAYHLRH 151 (263)
T ss_dssp HHHTT--CS---S---SGGGGS---SHHHHHHHHH------HHHHHHHHHHHHH-TT-SBHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc--hh--hh---hhhhccCCCCHHHHHHHHH------HHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 21100 00 00 011111 223554444322 333333333 33 4455688999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 018933 228 ACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALP---------CALIGMNSSLMSQYIKFVADRLLVALGCQRK 295 (348)
Q Consensus 228 ~~~l~~~l~~e~~~~~i~~l~~eav~~E~~~~~~~~~---------~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~ 295 (348)
+...+..|...- ++-++.+.+|++.=-.++...|+ ..+.+.+.+.+.+=-.-.....|..+|++-+
T Consensus 152 ~~~w~~rL~~gt--~es~~r~q~Al~~~wp~~~elF~~~~~~~~l~~~~~~~~~~~lr~~w~~~v~~~l~~~gL~~P 226 (263)
T PF05138_consen 152 GEDWLRRLGDGT--EESRERMQAALDRLWPYTLELFGPDDSEEALAWGGRAPDNEELRQRWLAEVVPVLEEAGLEVP 226 (263)
T ss_dssp HHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHCC-S-HCHHHHHCTTSSS-HHHHHHHHHHHHHHHHHHTT---S
T ss_pred HHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999988886322 33444455555544444443442 2456777777766555678888999998753
No 24
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=96.64 E-value=0.68 Score=44.32 Aligned_cols=202 Identities=12% Similarity=0.009 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018933 75 LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 154 (348)
Q Consensus 75 L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~ 154 (348)
||+.-|..+.+.+..++-.+-+.+.-+. ......|..|.+..++..+-+|.=|+..+-.+..+++.+.+ +....+.
T Consensus 35 mp~~yr~~L~~~l~~laDseLi~a~r~~-eWi~~AP~LeediAl~niaqDelGHa~~ly~~aeeLG~~r~---e~~~a~~ 110 (314)
T PRK13778 35 MPDAYRKTLIRQISQHAHSEIVGMLPEG-NWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSRE---ELIDDLL 110 (314)
T ss_pred cCHHHHHHHHHHHHHHhhHHHHhcchhc-cHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH---HHHHHHh
Confidence 6777788888888888776655554443 45677888999999999999999999999999999965432 3333222
Q ss_pred hcHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhHHHHHhHHHHHH--HHHhcCCCCchHHHHHHHHhhhhhhHHHHHHH
Q 018933 155 NIPCVAQKAKWALDWIHS-SDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (348)
Q Consensus 155 ~~p~l~~k~~~i~~~~~~-~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l 231 (348)
. .+.++.. ..+- ..+|+..++.- +|+.++.++. .| .+.--+.++.+...|++.|+.|...+...
T Consensus 111 r-----~~~~f~n-~fe~P~~dwAdtvvr~------~L~D~a~~~~~~~L-~~sSy~plA~~a~Ki~KEe~yH~rhg~~w 177 (314)
T PRK13778 111 S-----GKAKYSS-IFNYPTLTWADVGVIG------WLVDGAAIMNQVPL-CRCSYGPYARAMVRICKEESFHQRQGEEI 177 (314)
T ss_pred c-----chHHhcc-cccCCCCCHHHHHHHH------HHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222221 1221 22454443322 3444555543 23 34456779999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC--------------CCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 018933 232 YSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC--------------ALIGMNSSLMSQYIKFVADRLLVALGCQRK 295 (348)
Q Consensus 232 ~~~l~~e~~~~~i~~l~~eav~~E~~~~~~~~~~--------------~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~ 295 (348)
+..|..- .++-++++.+|++.=--++..+|+. .+...+.+++.+=-.-.....|..+|+.-+
T Consensus 178 l~rL~~G--T~esr~r~Q~Ald~~Wp~~~emFg~~d~~s~~~~~~~~~Gik~~~n~eLR~~w~~~v~~~l~~~gL~vP 253 (314)
T PRK13778 178 LLALARG--TPAQKQMAQDALNRWWWPALMMFGPPDDDSPHSAQSMAWKIKRFSNDELRQKFVDATVPQAEVLGLTLP 253 (314)
T ss_pred HHHHHhC--CHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8888642 3456667777777655555555531 122256666765445567778899997654
No 25
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=95.76 E-value=1.2 Score=38.94 Aligned_cols=199 Identities=12% Similarity=0.079 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH--HHHHHHHHH
Q 018933 76 LDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSK--EKHRLFNAI 153 (348)
Q Consensus 76 ~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~--e~~~~~~~~ 153 (348)
|+.=|++|.++=+-..-++.-.-+|... +...+|. -+-=+..-+-||+.|.+.|.-.=+.+.-.|+ --.+.|...
T Consensus 4 s~~YkdAYSRINaIVIEGEqeA~~Nyi~-la~llP~--~~deL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 80 (219)
T PF11266_consen 4 SETYKDAYSRINAIVIEGEQEAHDNYIS-LAELLPD--QKDELIRLAKMENRHKKGFQACGRNLGVTPDMPFAKEFFSPL 80 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-GG--GHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHhheeeeechHHHHHhHHH-HHHHCcc--cHHHHHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 5667889999988888888777777653 5555443 3444677788999999999988888864443 122233322
Q ss_pred hhcHHHHHHHHHHHHHhcCchHHHHHHHHH-HHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHH
Q 018933 154 ENIPCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (348)
Q Consensus 154 ~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~ 232 (348)
..+ .+++ ... ......++.- .++|.. ..+.|-+. + .-.=|-..++-.-+.+||..|..||..-+
T Consensus 81 h~n---Fq~A------~~~-gk~~tCLlIQaliIE~F-AIaAYniY--I--pVAD~FARkITegVVkDEy~HLNfGe~WL 145 (219)
T PF11266_consen 81 HGN---FQRA------AAE-GKVVTCLLIQALIIECF-AIAAYNIY--I--PVADPFARKITEGVVKDEYTHLNFGEEWL 145 (219)
T ss_dssp HHH---HHHH------HHT-T-HHHHHHHHHTHHHHH-HHHHHHHH--G--GGS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHH------HHc-CCeeehHHHHHHHHHHH-HHHHhhhc--e--ecccHHHHHHHHHHHhhHHHhcchHHHHH
Confidence 211 1110 111 1122222222 245531 12222221 1 00112234566778999999999997654
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCHHHH-HHHHHHHHHHHHHHcCCCC
Q 018933 233 SLLRKRLHWQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSLM-SQYIKFVADRLLVALGCQR 294 (348)
Q Consensus 233 ~~l~~e~~~~~i~~l~~eav~~E~~~~~~~~-~~~~~Gl~~~~~-~~yi~y~an~~L~~lG~~~ 294 (348)
+.-.. .+++++.+.-++..-+-...++..- +-.++|++++.+ .+|+- .-...|.++|+..
T Consensus 146 k~~f~-~~k~el~~An~~nLPlv~~MLnqV~~Da~vL~Meke~lvedFmi-~Y~eAL~~IGf~t 207 (219)
T PF11266_consen 146 KANFE-QSKAELEEANRENLPLVWKMLNQVAADARVLGMEKEALVEDFMI-AYGEALSNIGFTT 207 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHH-HHHHHHHHHT--H
T ss_pred HHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 32211 1223333322222222222222111 235788887655 44543 4456788888863
No 26
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=95.72 E-value=0.26 Score=47.48 Aligned_cols=166 Identities=16% Similarity=0.018 Sum_probs=87.9
Q ss_pred cCCcCccccCcccc-------hHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHhcCC--------hH
Q 018933 55 ASFWTAEEVDLSQD-------VQHWE----RLLDSEKHFISHVLAFFAASDGIVLENLA---ARFLNDIQ--------IP 112 (348)
Q Consensus 55 ~~fW~peeid~s~D-------~~d~~----~L~~~er~~~~~~la~l~~~d~~v~~~l~---~~~~~~~~--------~~ 112 (348)
+.-|.|.++-+-.+ ..+|+ +||+.-+.++...+ +..++|. ..+..... ..
T Consensus 27 ~~~W~PhD~lP~~~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~l--------lTEd~LPsY~~~l~~~~~~~~~~ga~~~ 98 (330)
T PF03405_consen 27 EKDWQPHDFLPWSEGRNFFLGGKDWRPSQSTLPDDARVALVGNL--------LTEDNLPSYHRELATLFGVRDEDGASDS 98 (330)
T ss_dssp GGS--GGGGS-GCCSTTHHHCCHHHHHHHHTS-HHHHHHHHHHH--------HHHHTHHHHHHHHTTSTTT--SSSS--S
T ss_pred hhCCCccccCCCCccccHhHhcccCCHhhccCCHHHHHHHHHHH--------HhhhhhhHHHHHHHhhcCccccCCCCCC
Confidence 46899877644333 45663 57776666554433 2223332 22333322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhhHH
Q 018933 113 EARAFYGFQIAMENIHSEMYSLLLETYI-KDSKEKHRLFNAIENIPCVAQKAKWALDWIH--SSDSFAERLVGFACVEGI 189 (348)
Q Consensus 113 E~~~~~~~q~~~E~iH~esYs~il~~~~-~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~--~~~~~~~~lv~~~~lEgi 189 (348)
+...|.+...++|+.|+.+-..++-.-. .||.+.+. .+...+.+-++ ....-...++.-++-|-.
T Consensus 99 ~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~------------~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~A 166 (330)
T PF03405_consen 99 PWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALER------------TRMYLITAGFDPGFESDPYLGFVYTSFQERA 166 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCH------------CCHHHHHH----S-TTHHHHHHHHHHHHHHH
T ss_pred cHHHHcccccccccccHHHHHHHHHHhCCCCHHHHHH------------HHHHHHhcCCCccCCCChHHHHHHHHHHHHH
Confidence 5688999999999999999888884332 24431000 01111222221 111112232222334432
Q ss_pred HHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhH
Q 018933 190 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW 241 (348)
Q Consensus 190 ~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~ 241 (348)
-..++--+--+++.--=|-++++...|++||.+|..|.+.++..+....|.
T Consensus 167 -T~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd 217 (330)
T PF03405_consen 167 -TQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPD 217 (330)
T ss_dssp -HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred -HHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcH
Confidence 112333333444333458899999999999999999999999877655443
No 27
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.33 E-value=0.45 Score=45.46 Aligned_cols=208 Identities=15% Similarity=0.132 Sum_probs=118.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 018933 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQ--IPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (348)
Q Consensus 71 d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~--~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (348)
+|..|+++.|..+.--|-.-..++ .-|-.+-..+...+. +|++.-+++..+-+|++|+-+-+..+..+..
T Consensus 72 ~~d~l~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l------- 143 (355)
T PRK13654 72 DWDHLDPETRKEFIDFLERSCTAE-FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGL------- 143 (355)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCc-------
Confidence 688999999997776553322222 222233344556665 8999999999999999999998888876642
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhcCchHHHH-HHHHH--HHhhHHHHHhHHHHHH-HHHhc--CCCCchHHHHHHHHhhhh
Q 018933 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAE-RLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 222 (348)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~rDE~ 222 (348)
..+.+.|.+.-. | +++. +.|.| ++-|.|- |.=|..+| .|.+. ..+-.+=+-...=+.||.
T Consensus 144 ----~lDLgfLtk~k~-----Y----TfF~PkfIfYatYLSEKIG-YwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEn 209 (355)
T PRK13654 144 ----SLDLGFLTKKKK-----Y----TFFPPKFIFYATYLSEKIG-YWRYITIYRHLEKHPEHRFHPIFKFFENWCQDEN 209 (355)
T ss_pred ----cccchhhccCCc-----e----eeeCcceeeehhHhHhhhh-HHHHHHHHHHHHhCcccccCchHHHHHHHhcccc
Confidence 122333322211 1 1111 12222 3456662 33455555 55543 355566677778899999
Q ss_pred hhHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 018933 223 LHCDFACLLYSL---LRKRLHWQKVHHMVHEAVEIETQFVCEAL---PCALIGMNSSLMSQYIKFVADRLLVALGCQRKY 296 (348)
Q Consensus 223 ~H~~f~~~l~~~---l~~e~~~~~i~~l~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y 296 (348)
+|+++...+.+. |.+.+-..--...+--+|=.- =|+.+.- -.+.+||++.+....|--..|....++ +|-..
T Consensus 210 RHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsVfaT-myl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rv-FP~~L 287 (355)
T PRK13654 210 RHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAVFAT-MYLRDHERPDFYEALGLDAREYDQEVIRKTNETSARV-FPVVL 287 (355)
T ss_pred hhHHHHHHHHhcCchhhcchHHHHHHHHHHHHHHhh-eeeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999987542 211111011111111111000 0000000 036789999888888888888877764 44445
Q ss_pred CCCCCc
Q 018933 297 NVENPF 302 (348)
Q Consensus 297 ~~~nP~ 302 (348)
++.||-
T Consensus 288 dvd~P~ 293 (355)
T PRK13654 288 DVDDPR 293 (355)
T ss_pred cCCChH
Confidence 567874
No 28
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.20 E-value=0.95 Score=43.19 Aligned_cols=208 Identities=15% Similarity=0.125 Sum_probs=118.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 018933 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (348)
Q Consensus 71 d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~--~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (348)
+|..|+++.|..+.--|-.-..++ .-|-.+-..+...+ ++|++.-+++..+-+|++|+-+-...+..+..
T Consensus 68 ~~d~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l------- 139 (351)
T CHL00185 68 SWSNLDEKTKSLFVEFLERSCTAE-FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNL------- 139 (351)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCc-------
Confidence 699999999997776553322222 12223334455666 45999999999999999999998888876642
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhcCchHHHH-HHHHH--HHhhHHHHHhHHHHHH-HHHhc--CCCCchHHHHHHHHhhhh
Q 018933 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAE-RLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 222 (348)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~rDE~ 222 (348)
..+.+.|.+.-. | +++. +.|.| ++-|.|- |.=|..+| .|.+. ..+-.+=+-..-=+.||.
T Consensus 140 ----~lDLgfLtk~rk-----Y----TfF~PkfI~YAtYLSEKIG-YwRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEn 205 (351)
T CHL00185 140 ----SLDLGFLTKSRK-----Y----TFFSPKFIFYATYLSEKIG-YWRYITIYRHLEKNPEYRIYPIFKFFESWCQDEN 205 (351)
T ss_pred ----cccchhhccCCc-----e----eeecccceehhhHHHhhhh-hhHHhHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 122333322210 1 1111 22223 3457663 33445554 55544 345556667777899999
Q ss_pred hhHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 018933 223 LHCDFACLLYSL---LRKRLHWQKVHHMVHEAVEIETQFVCEAL---PCALIGMNSSLMSQYIKFVADRLLVALGCQRKY 296 (348)
Q Consensus 223 ~H~~f~~~l~~~---l~~e~~~~~i~~l~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y 296 (348)
+|+++...+++. |.+.+-..--...+--+|=. .=|+.+.- -.+.+||++.+....|--..|....++ +|-..
T Consensus 206 RHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfa-Tmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rv-FP~~L 283 (351)
T CHL00185 206 RHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFA-TMYLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARL-FPVVL 283 (351)
T ss_pred hhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHH-HheehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999988542 22111101111111111100 00111000 036789999999888888888877764 44444
Q ss_pred CCCCCc
Q 018933 297 NVENPF 302 (348)
Q Consensus 297 ~~~nP~ 302 (348)
++.||-
T Consensus 284 dvd~P~ 289 (351)
T CHL00185 284 DVDNPK 289 (351)
T ss_pred cCCCHH
Confidence 567884
No 29
>PRK14983 aldehyde decarbonylase; Provisional
Probab=94.97 E-value=1.3 Score=39.14 Aligned_cols=199 Identities=14% Similarity=0.115 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH--HHHHHHHHH
Q 018933 76 LDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSK--EKHRLFNAI 153 (348)
Q Consensus 76 ~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~--e~~~~~~~~ 153 (348)
|+.=|++|.++=+-..-++.-.-+|... +...+ |+-+-=+..-+-||+.|.+.|.-.=+.+.-.|+ --.+.|...
T Consensus 14 s~~YkdAYSRINaIVIEGEqeA~dNyi~-la~ll--P~~~dEL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 90 (231)
T PRK14983 14 SETYKDAYSRINAIVIEGEQEAHDNYIS-LATLL--PEHAEELTRLAKMEMRHKKGFTACGRNLGVTPDMPFAKEFFSPL 90 (231)
T ss_pred cHHHHHHHHHhceeeEeccHHHHHhHHH-HHHHC--cccHHHHHHHHHHHHHHHhHHHHHcccCcCCCCcHHHHHHHHHH
Confidence 4566788888877777777666666653 55544 334444777888999999999887777754332 122334332
Q ss_pred hhcHHHHHHHHHHHHHhcCchHHHHHHHHH-HHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHH
Q 018933 154 ENIPCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (348)
Q Consensus 154 ~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~ 232 (348)
..+ .+++ .... .....++.- .++|.. ..+.|-+.. .-.=|--.++-.-+.+||..|..||..-+
T Consensus 91 h~n---Fq~A------~~eg-kv~TCLlIQaLiIE~F-AIaAYniYI----pVAD~FARkITegVVkDEY~HLN~Ge~WL 155 (231)
T PRK14983 91 HGN---FQKA------AAEG-KVVTCLLIQALIIEAF-AIAAYNIYI----PVADPFARKITEGVVKDEYLHLNFGEEWL 155 (231)
T ss_pred HHH---HHHH------HhcC-CeeehHHHHHHHHHHH-HHHHHhhcc----ccccHHHHHHHHhHHhhHHHhcchHHHHH
Confidence 211 1111 1111 111112222 245541 112221110 00112234556778999999999997654
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCHHHH-HHHHHHHHHHHHHHcCCCC
Q 018933 233 SLLRKRLHWQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSLM-SQYIKFVADRLLVALGCQR 294 (348)
Q Consensus 233 ~~l~~e~~~~~i~~l~~eav~~E~~~~~~~~-~~~~~Gl~~~~~-~~yi~y~an~~L~~lG~~~ 294 (348)
..-.. -+++++.+.-++..-+-...++..- +-.++|++++.+ .+|+- .-...|.++|+..
T Consensus 156 k~~f~-~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi-~Y~eAL~~IGf~t 217 (231)
T PRK14983 156 KANFE-TSKDELEEANKENLPLVWKMLNQVADDAAVLGMEKEALVEDFMI-AYGEALSNIGFST 217 (231)
T ss_pred HHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 32211 1122222222222112112121111 235778887655 45543 4456788899864
No 30
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=94.85 E-value=1.9 Score=41.05 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=117.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 018933 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (348)
Q Consensus 71 d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~--~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (348)
+|..|+++.|..+.--|-.-..++ .-|-.+-..+...+ ++|.+.-+++..+-+|++|+-+-+.-+..+..
T Consensus 62 ~~~~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l------- 133 (337)
T TIGR02029 62 SWEHIDGELRQAFIEFLERSCTSE-FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGL------- 133 (337)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCc-------
Confidence 466799999987766553322222 12223334455566 67889999999999999999998888776642
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhcCchHHHH-HHHHH--HHhhHHHHHhHHHHHH-HHHhc--CCCCchHHHHHHHHhhhh
Q 018933 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAE-RLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 222 (348)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~rDE~ 222 (348)
..+...|.+.-. | ++.. +.|.| ++-|.|- |.=|..+| .|.+. ..+-.+=+-...=+.||.
T Consensus 134 ----~lDLgfLtk~r~-----Y----TfF~PkfI~YAtYLSEKIG-YwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEn 199 (337)
T TIGR02029 134 ----ALDLGFLTKTRK-----Y----TFFRPKFIYYATYLSEKIG-YWRYITIYRHLEENPENQFYPIFKYFESWCQDEN 199 (337)
T ss_pred ----ccchhhhccCCc-----e----eeeccceeehhhHhHhhhh-hHHHHHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 122233322210 1 1111 22223 3456663 33455555 55544 355556667778899999
Q ss_pred hhHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 018933 223 LHCDFACLLYSL---LRKRLHWQKVHHMVHEAVEIETQFVCEAL---PCALIGMNSSLMSQYIKFVADRLLVALGCQRKY 296 (348)
Q Consensus 223 ~H~~f~~~l~~~---l~~e~~~~~i~~l~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y 296 (348)
+|+++...+.+. |.+.+-...-...+--+|=.- =|+.+.- -.+.+||++.+....|--..|....++ +|-..
T Consensus 200 RHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaT-myl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rv-FP~~L 277 (337)
T TIGR02029 200 RHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYST-MYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRI-FPMTL 277 (337)
T ss_pred hhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH-HhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999987542 211110011111111111100 0111111 036789999999999988899887765 44445
Q ss_pred CCCCCc
Q 018933 297 NVENPF 302 (348)
Q Consensus 297 ~~~nP~ 302 (348)
++.||-
T Consensus 278 dvd~P~ 283 (337)
T TIGR02029 278 NTEHPR 283 (337)
T ss_pred cCCCHH
Confidence 567884
No 31
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=94.09 E-value=2.1 Score=40.50 Aligned_cols=208 Identities=13% Similarity=0.111 Sum_probs=117.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 018933 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQI--PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (348)
Q Consensus 71 d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~--~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (348)
+|..++++.|..+.--|-.-..++ .-|-.+-..+...+.+ |++.-+++..+-+|++|+-+-+.-+..+..
T Consensus 52 ~~~~~~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l------- 123 (323)
T cd01047 52 AADKIDPELRQIFLEFLERSCTSE-FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNL------- 123 (323)
T ss_pred hhhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCc-------
Confidence 466799998887766553322222 2222333455666644 999999999999999999988887776642
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhcCchHHHH-HHHHH--HHhhHHHHHhHHHHHH-HHHhc--CCCCchHHHHHHHHhhhh
Q 018933 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAE-RLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 222 (348)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~rDE~ 222 (348)
..+.+.|.+.-. | ++.. +.|.| ++-|.|- |.=|..+| .|.+. ..+-.+=+-...=+.||.
T Consensus 124 ----~lDLgfLtk~r~-----Y----TfF~PkfI~YatYLSEKIG-YwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEn 189 (323)
T cd01047 124 ----ALDLGFLTKTRK-----Y----TFFKPKFIFYATYLSEKIG-YWRYITIYRHLERNPENQFHPIFKYFENWCQDEN 189 (323)
T ss_pred ----ccchhhhccCCc-----e----eeeCccceeehhHhhhhhh-hHHHHHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 122333322211 1 1111 12222 2456662 33455554 55544 355566667778899999
Q ss_pred hhHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 018933 223 LHCDFACLLYSL---LRKRLHWQKVHHMVHEAVEIETQFVCEAL---PCALIGMNSSLMSQYIKFVADRLLVALGCQRKY 296 (348)
Q Consensus 223 ~H~~f~~~l~~~---l~~e~~~~~i~~l~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y 296 (348)
+|+++...+++. |.+.+-..--...+--+|=.- =|+.+.- -.+.+||++.+....|--..|....++ +|-..
T Consensus 190 RHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaT-myl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rv-FP~~L 267 (323)
T cd01047 190 RHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYAT-MYLNDHQRPDFYEALGLDTTEFDMHVIRETNETAARV-FPAVL 267 (323)
T ss_pred hhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHh-heeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999987542 211110011111111111000 0110000 036789999999999988899887765 44445
Q ss_pred CCCCCc
Q 018933 297 NVENPF 302 (348)
Q Consensus 297 ~~~nP~ 302 (348)
++.||-
T Consensus 268 dvd~P~ 273 (323)
T cd01047 268 DVDNPE 273 (323)
T ss_pred cCCChH
Confidence 577885
No 32
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=93.36 E-value=1.8 Score=41.33 Aligned_cols=208 Identities=14% Similarity=0.131 Sum_probs=115.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 018933 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (348)
Q Consensus 71 d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~--~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (348)
+|.+|+++.|..+.--|-.-..++ .-+-.+-..+...+ .+|.+.-+++..+-+|++|+-+-+..+..+..
T Consensus 68 ~~~~l~~~~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l------- 139 (357)
T PLN02508 68 AADKIQGPLRQIFIEFLERSCTAE-FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNL------- 139 (357)
T ss_pred chhhCCHHHHHHHHHHHHhhhhhh-cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCc-------
Confidence 466799998887766553322222 11222334455666 45999999999999999999998888876642
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhcCchHHHH-HHHHH--HHhhHHHHHhHHHHHH-HHHhc--CCCCchHHHHHHHHhhhh
Q 018933 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAE-RLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 222 (348)
Q Consensus 149 ~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~rDE~ 222 (348)
..+...|.+.-. | ++.. +.|.| ++-|.|- |.=|..+| .|.+. ..+-.+=+-...=+.||.
T Consensus 140 ----~lDLgfLtk~rk-----Y----TfF~PkfIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEn 205 (357)
T PLN02508 140 ----ALDLGFLTKNRK-----Y----TFFKPKFIFYATYLSEKIG-YWRYITIYRHLQANPDYQLYPIFKYFENWCQDEN 205 (357)
T ss_pred ----cccchhhcccCc-----e----eeeCcceeehhhHhhhhhh-hhhHhHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 122233322211 1 1111 12222 2456662 33455555 55544 355556667777899999
Q ss_pred hhHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 018933 223 LHCDFACLLYSL---LRKRLHWQKVHHMVHEAVEIETQFVCEAL---PCALIGMNSSLMSQYIKFVADRLLVALGCQRKY 296 (348)
Q Consensus 223 ~H~~f~~~l~~~---l~~e~~~~~i~~l~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y 296 (348)
+|+++...+++. |.+.+-..--...+--+|=. .=|+.+.- -.+.+||+..+....|--..|....++ +|-..
T Consensus 206 RHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfa-TMyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rv-FP~~L 283 (357)
T PLN02508 206 RHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV-TMYLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARI-FPAVL 283 (357)
T ss_pred hhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHH-HheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999988542 21111001001111111100 00110000 036789999888888888888877764 44444
Q ss_pred CCCCCc
Q 018933 297 NVENPF 302 (348)
Q Consensus 297 ~~~nP~ 302 (348)
++.||-
T Consensus 284 dvd~P~ 289 (357)
T PLN02508 284 DVENPE 289 (357)
T ss_pred cCCCHH
Confidence 567774
No 33
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=92.93 E-value=0.53 Score=44.61 Aligned_cols=44 Identities=20% Similarity=0.120 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHhcCCCCc--hHHHHHHHHhhhhhhHHHHHHHHHHH
Q 018933 192 SGSFCAIFWLKKRGLMPG--LTFSNELISRDEGLHCDFACLLYSLL 235 (348)
Q Consensus 192 ~s~F~~~~~l~~~g~l~g--~~~~i~~I~rDE~~H~~f~~~l~~~l 235 (348)
+|||...--++++.+=+. ++++..+++|||++|.+|.-.-+...
T Consensus 86 FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df 131 (337)
T TIGR02029 86 FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDF 131 (337)
T ss_pred hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 588888888888875555 99999999999999999877655433
No 34
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=92.92 E-value=0.49 Score=45.24 Aligned_cols=44 Identities=25% Similarity=0.163 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHhcCC--CCchHHHHHHHHhhhhhhHHHHHHHHHHH
Q 018933 192 SGSFCAIFWLKKRGL--MPGLTFSNELISRDEGLHCDFACLLYSLL 235 (348)
Q Consensus 192 ~s~F~~~~~l~~~g~--l~g~~~~i~~I~rDE~~H~~f~~~l~~~l 235 (348)
+|||...--++++.+ =|-++++..+++|||++|.+|.-.-+...
T Consensus 96 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 141 (355)
T PRK13654 96 FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDF 141 (355)
T ss_pred hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 588888888888876 89999999999999999999876655433
No 35
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=92.87 E-value=0.48 Score=44.66 Aligned_cols=44 Identities=25% Similarity=0.154 Sum_probs=36.4
Q ss_pred HhHHHHHHHHHhcCCC--CchHHHHHHHHhhhhhhHHHHHHHHHHH
Q 018933 192 SGSFCAIFWLKKRGLM--PGLTFSNELISRDEGLHCDFACLLYSLL 235 (348)
Q Consensus 192 ~s~F~~~~~l~~~g~l--~g~~~~i~~I~rDE~~H~~f~~~l~~~l 235 (348)
+|||...--++++.+= |-++++..+++|||++|.+|.-.-+...
T Consensus 76 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 121 (323)
T cd01047 76 FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDF 121 (323)
T ss_pred hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 5888888888888744 9999999999999999999876655433
No 36
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=7.6 Score=34.10 Aligned_cols=124 Identities=18% Similarity=0.090 Sum_probs=75.2
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--hhcHHHHHHHHHHHHHhcCchHHHHHHH
Q 018933 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAI--ENIPCVAQKAKWALDWIHSSDSFAERLV 181 (348)
Q Consensus 104 ~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~--~~~p~l~~k~~~i~~~~~~~~~~~~~lv 181 (348)
.++..++++++|..+...+.+|..|...++.++..+..++..-.+...+. ...+.++. . ..+..+.++.+++-
T Consensus 45 ~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~I~ 119 (176)
T COG1633 45 ELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQP----G-KEMEKSVSYLEAIE 119 (176)
T ss_pred HHHHhcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCc----c-cccccchhHHHHHH
Confidence 47788999999999999999999999999999999975441100111111 11111111 0 02333344444443
Q ss_pred HHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 018933 182 GFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (348)
Q Consensus 182 ~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~ 236 (348)
+ ++++-.....|+-..... ..=++...++..+..||.-|.......++.+.
T Consensus 120 ~--a~~~E~~t~~~Y~~~~~~--~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~ 170 (176)
T COG1633 120 A--AMEAEKDTIEFYEELLDE--LVNEEAKKLFKTIADDEKGHASGLLSLYNRLT 170 (176)
T ss_pred H--HHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 233332223333332222 23377888999999999999998888876554
No 37
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=92.21 E-value=0.68 Score=44.15 Aligned_cols=44 Identities=27% Similarity=0.157 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHhcC--CCCchHHHHHHHHhhhhhhHHHHHHHHHHH
Q 018933 192 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (348)
Q Consensus 192 ~s~F~~~~~l~~~g--~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l 235 (348)
+|||...--++++. .=|-++++..+++|||++|.+|.-.-+...
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 92 FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 58888888888886 449999999999999999999877655433
No 38
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=91.58 E-value=0.17 Score=48.10 Aligned_cols=44 Identities=27% Similarity=0.166 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHhcC--CCCchHHHHHHHHhhhhhhHHHHHHHHHHH
Q 018933 192 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (348)
Q Consensus 192 ~s~F~~~~~l~~~g--~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l 235 (348)
+|||...--++++. .=|-++++..+++|||++|.+|.-.-+...
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df 137 (357)
T PLN02508 92 FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDF 137 (357)
T ss_pred cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHc
Confidence 58888888888886 449999999999999999999877665443
No 39
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=91.18 E-value=4.7 Score=33.34 Aligned_cols=106 Identities=11% Similarity=-0.006 Sum_probs=67.6
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 018933 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (348)
Q Consensus 104 ~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (348)
..+..-.-+++..++..|+..|..|+.-+...+..+...|. .|.. -..+....++.
T Consensus 25 ~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----------~~~~---------~~~~~~~~l~~---- 80 (134)
T cd01041 25 EKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----------GPPI---------GIGDTLENLKA---- 80 (134)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----------CCCC---------CcchHHHHHHH----
Confidence 34455567888999999999999999999988887765542 1110 00000011111
Q ss_pred HHhhHHH--HHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHH
Q 018933 184 ACVEGIF--FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (348)
Q Consensus 184 ~~lEgi~--f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~ 234 (348)
.+++-. ...++.-+.-.+....-..++..+..|..||..|......++..
T Consensus 81 -~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 81 -AIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112211 12334444455667778999999999999999999977766543
No 40
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=91.11 E-value=13 Score=34.61 Aligned_cols=142 Identities=18% Similarity=0.111 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHhcCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCChH---HHHH
Q 018933 76 LDSEKHFISHVLA--FFAASDGIVLENLAARFLNDIQIPEARAF--YGFQIAMENIHSEMYSLLLETYIKDSK---EKHR 148 (348)
Q Consensus 76 ~~~er~~~~~~la--~l~~~d~~v~~~l~~~~~~~~~~~E~~~~--~~~q~~~E~iH~esYs~il~~~~~d~~---e~~~ 148 (348)
++.-|..+.+.++ -+.+.|... ....+|.+. .|.. .| +...+.+|+.|-..+..-|+.++.+-+ .-..
T Consensus 63 ~~~~r~~llHaiAhIE~~AIdLa~--Da~~RF~~~--lP~~-f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~g 137 (253)
T PF04305_consen 63 TPEGRAALLHAIAHIELNAIDLAL--DAIYRFHPN--LPRE-FYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDG 137 (253)
T ss_pred ChhhHHHHHHHhcchHHHHHHHHH--HHHHHHhcc--CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhH
Confidence 4556667777776 344444322 222234222 2222 12 447788999999999999999974322 1122
Q ss_pred HHHHHhhcH-HHHHHHHHHHHHhcCchHHHHHHHHHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHH
Q 018933 149 LFNAIENIP-CVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 227 (348)
Q Consensus 149 ~~~~~~~~p-~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f 227 (348)
+++....-. .+..|+..+- .++|+--+=.+=..+--|...|-. .++.+++.|.+||--||.+
T Consensus 138 Lw~~~~~t~~dl~~R~A~vp----------------~~~EArGLD~~p~~~~k~~~~gD~-~sa~iL~~I~~DEi~HV~~ 200 (253)
T PF04305_consen 138 LWEAAEQTAHDLLARMALVP----------------RVLEARGLDVTPFIIEKFRSAGDE-ESAAILEIILRDEIGHVAI 200 (253)
T ss_pred HHHHHHHhccCHHHHHHHHH----------------HHHHhhCCCCCHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHh
Confidence 333332111 2222222222 245554333333333344544543 7889999999999999999
Q ss_pred HHHHHHHHHhhh
Q 018933 228 ACLLYSLLRKRL 239 (348)
Q Consensus 228 ~~~l~~~l~~e~ 239 (348)
|..=++.+....
T Consensus 201 G~rWf~~~c~~~ 212 (253)
T PF04305_consen 201 GNRWFRYLCEQR 212 (253)
T ss_pred hHHHHHHHHHhc
Confidence 999988887643
No 41
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=90.61 E-value=5 Score=39.30 Aligned_cols=114 Identities=15% Similarity=-0.049 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcHHHHHHHHHHHHHhcC--chHHHHHHHHHHHhhHHH
Q 018933 114 ARAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVGFACVEGIF 190 (348)
Q Consensus 114 ~~~~~~~q~~~E~iH~esYs~il~~~~~-d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~~~~lEgi~ 190 (348)
...|.....++|+.|+..-..+|=.-.. |+.+.+. .+...+.+-++. ..+....++--++-|..-
T Consensus 157 W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~------------t~q~li~~G~d~~~~~~py~~~vYtSFQErAT 224 (390)
T PLN00179 157 WARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEK------------TIQYLIGSGMDPKTENNPYLGFIYTSFQERAT 224 (390)
T ss_pred hhhhccccccccchHHHHHHHHHhhccCcCHHHHHH------------HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4457778889999999988877753332 5532111 011122222331 223344544334555542
Q ss_pred HHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh
Q 018933 191 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240 (348)
Q Consensus 191 f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~ 240 (348)
+ .|..-+--++.+.-=|-++++...|+.||.+|-.|..++...+.+-.|
T Consensus 225 ~-VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dP 273 (390)
T PLN00179 225 F-ISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDP 273 (390)
T ss_pred H-HHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCc
Confidence 2 222223334443224778999999999999999999999987775544
No 42
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=89.45 E-value=10 Score=30.91 Aligned_cols=102 Identities=17% Similarity=0.055 Sum_probs=63.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHH-HHHHHhcCchHHHHHHH
Q 018933 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAK-WALDWIHSSDSFAERLV 181 (348)
Q Consensus 103 ~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~-~i~~~~~~~~~~~~~lv 181 (348)
..++..+++|+.+-.+...+-+|.-|.+.+..++...+.+|. + +.++.... ++.+.. +. .++.++.
T Consensus 18 ~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~l~~~~-g~-~~~l~~~ 84 (125)
T cd01044 18 RKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-R----------PKLKIFFYKLLARIF-GP-TFVLKLL 84 (125)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-C----------ccHHHHHHHHHHHHH-hH-HHHHHHH
Confidence 456778899999999999999999999999999998875542 0 11111100 111111 11 1111111
Q ss_pred HHHHhh--HHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHH
Q 018933 182 GFACVE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (348)
Q Consensus 182 ~~~~lE--gi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l 231 (348)
.-.| ++.||...+-. ...+..|..||..|......+
T Consensus 85 --~~~E~~ai~~Y~~~~~~------------~~~~~~Ii~dE~~H~~~L~~~ 122 (125)
T cd01044 85 --ERGEERAIEKYDRLLEE------------RPELKEIIADELEHEEVLIAL 122 (125)
T ss_pred --HHhHHhhHhhHHhhhhh------------hHHHHHHHHHHHHHHHHHHHh
Confidence 1234 67776655433 447788999999999865544
No 43
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=85.69 E-value=31 Score=32.21 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=127.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHH
Q 018933 74 RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY-IKDSKEKHRLFNA 152 (348)
Q Consensus 74 ~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~-~~d~~e~~~~~~~ 152 (348)
.+|+.-|.++.+.++.++-.+-+...-..+ -..+.|.-|.+..++..+-+|.-|+.-+=++.+++ ++..+ +.+..
T Consensus 11 ~~p~~~~~tLi~~i~~~ad~elv~~~r~~e-W~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~---d~la~ 86 (265)
T COG3396 11 WMPEAYRRTLIRLISQLADSELVLALREGE-WLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGRE---DDLAY 86 (265)
T ss_pred hCCHHHHHHHHHHHHHhcchHHHHhccCCc-ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHH
Confidence 478888999999998888877555544432 44577888999999999999999999999999999 54432 33332
Q ss_pred HhhcHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhhHHHHHhHHHHHHHH-HhcCCCCchHHHHHHHHhhhhhhHHHHHH
Q 018933 153 IENIPCVAQKAKWALDWIHSS-DSFAERLVGFACVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFACL 230 (348)
Q Consensus 153 ~~~~p~l~~k~~~i~~~~~~~-~~~~~~lv~~~~lEgi~f~s~F~~~~~l-~~~g~l~g~~~~i~~I~rDE~~H~~f~~~ 230 (348)
.+. +.. +.....+-| -+++-.++ + .+++-+++++..- -.+.-.+.++.+...|++-|.-|..++..
T Consensus 87 ~r~-g~~-----k~n~~~n~P~~~Wadt~~-~-----~fLvD~~~~~~l~~l~~ssy~PlA~~a~k~~kEe~fHl~~~~~ 154 (265)
T COG3396 87 LRD-GRH-----KRNSLFNLPTGDWADTIV-R-----GFLVDGAAIYQLEALADSSYGPLARAAQKICKEEEFHLRHGKT 154 (265)
T ss_pred Hhh-hHH-----HHHHHHcCCCccHHHHHH-H-----HHHHhHHHHHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHHH
Confidence 221 111 111112211 12322222 2 1233444444311 13345688999999999999999999999
Q ss_pred HHHHHHhhhh------HHHHHHHHHHHHHH------HHHHHHHhcCCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCCC--
Q 018933 231 LYSLLRKRLH------WQKVHHMVHEAVEI------ETQFVCEALPCALIGMN-SSLMSQYIKFVADRLLVALGCQRK-- 295 (348)
Q Consensus 231 l~~~l~~e~~------~~~i~~l~~eav~~------E~~~~~~~~~~~~~Gl~-~~~~~~yi~y~an~~L~~lG~~~~-- 295 (348)
.+..|.+.-. ++.+......+++. +..-..+. ..|--.+ .+.-.+|++ ..+..|..+|+.-+
T Consensus 155 ~l~~l~~gT~~~~~~~Q~AlN~wwp~~lemf~~~~~~~~~~a~~--~gI~~~~n~~Lrq~~i~-~~~~~l~~~gltvPd~ 231 (265)
T COG3396 155 WLKRLANGTEESRQMAQAALNRWWPRALEMFGPSASESELSAAK--WGIKVDPNDELRQAWIK-EVNEELRELGLTVPDP 231 (265)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCcccccchhHHHH--cCCCCCCHHHHHHHHHH-HHHHHHHHhcCCCCcc
Confidence 9887764432 12233333333221 11111111 1222233 444566777 77888999996543
Q ss_pred ---CC------CCCCcchhhhc
Q 018933 296 ---YN------VENPFDWMEFI 308 (348)
Q Consensus 296 ---y~------~~nP~~w~~~~ 308 (348)
|+ +..+.+|.+.+
T Consensus 232 ~l~~n~~~g~h~~~~~~~l~~~ 253 (265)
T COG3396 232 NLHYNGKRGHHTEHLGDWLAEM 253 (265)
T ss_pred ccccccccCCcccchhhHHHHH
Confidence 12 23466777654
No 44
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=84.88 E-value=18 Score=28.95 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=33.5
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018933 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (348)
Q Consensus 104 ~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~ 140 (348)
.++..+++++++.++...+.+|-.|.+.+..++..+.
T Consensus 19 ~~a~~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 19 ELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667788999999999999999999999999999874
No 45
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=80.28 E-value=64 Score=31.89 Aligned_cols=209 Identities=11% Similarity=0.077 Sum_probs=113.7
Q ss_pred cCcccch--HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018933 63 VDLSQDV--QHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (348)
Q Consensus 63 id~s~D~--~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~ 140 (348)
|.+.+.+ ..|+.+|.+-|..+.+++....-.+-.-.+... .+...+++---...+-....+|..|.-+-.++|...+
T Consensus 86 I~fG~hkGe~awqevPgE~r~~L~riIv~QgDtEpASVEQqr-~lg~taPSlyD~rnlfqvnvEEgRHlWaMvyLL~k~F 164 (471)
T TIGR03225 86 IPFGEHKGEPAWQEVPGEYRSMLRRLIVIQGDTEPASVEQQR-HLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHKYF 164 (471)
T ss_pred eccccccccchHhhCCHHHHHHHHHHHhhccCCCchhHHHHH-HhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455443 469999999999999998654322211111111 1222344433333344455788999999999995554
Q ss_pred -CChH-HHHHHHHHH---hhcHHHHHHHHHHHHHhcCchHHHHHHHHHH-HhhHHHHHhHHHHHHHHHhcCCCCchHHHH
Q 018933 141 -KDSK-EKHRLFNAI---ENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSN 214 (348)
Q Consensus 141 -~d~~-e~~~~~~~~---~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i 214 (348)
.|.. +-+++..+- .+.|. ++...+.+.+-....++|. ++-.. |=+-+.++++.+ +-.++...
T Consensus 165 G~dGreeAe~LL~rrsGd~d~PR-------iL~AFN~~t~dWlsffmFT~ftDRd----Gk~QL~alaeS~-FdPLaRt~ 232 (471)
T TIGR03225 165 GRDGREEAEALLRRRSGDADNPR-------ILGAFNEKTPDWLSFFMFTYFTDRD----GKMQLAALAESG-FDPLSRTC 232 (471)
T ss_pred CCccHHHHHHHHHhhcCCCCCcc-------hhhhccCCCccHHHHhHhheeeccc----chhhHHHHHhcC-CchHhhhh
Confidence 3432 222233221 12221 1223333333345555553 34443 334455666666 44577778
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 018933 215 ELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQR 294 (348)
Q Consensus 215 ~~I~rDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~ 294 (348)
+.+...|..|.-+|-.=+..+.++-++-.-..-..+. ..+ .+.=+|+...+..|+-+---+.|.-+|-+.
T Consensus 233 rfMltEEahHmfvGetGv~rviqrtce~m~~~~~~D~--------~~i--r~~G~IdLptiQk~lN~wy~~~lDlFG~e~ 302 (471)
T TIGR03225 233 RFMLTEEAHHMFVGESGVGRVIERTCQVMKENGTDDP--------YRI--RALGVIDLPTIQKYLNFHYSVTSDLFGAEV 302 (471)
T ss_pred HHHhhhhHhHhhhhhHHHHHHHHHHHHHHHhcCCCch--------hhh--hhccCcchHHHHHHHHhhccHHHHhhcchh
Confidence 9999999999999876554444332211000000000 001 122235667788898888888888888775
No 46
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=78.37 E-value=7.5 Score=31.37 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=61.5
Q ss_pred HHhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhc-C-chHHHHHH
Q 018933 105 FLNDIQI--PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIH-S-SDSFAERL 180 (348)
Q Consensus 105 ~~~~~~~--~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~-~-~~~~~~~l 180 (348)
++..+++ |+++..+...+.+|..|...+..+++........ . +......+.... ... . ..+ ....
T Consensus 20 ~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~--~-~~~~~~~~~~~~-------~~~~~~~~~-~~~~ 88 (137)
T PF02915_consen 20 LAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEP--P-FLEEKVEYSFFP-------KLEEETDEN-LEEA 88 (137)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHT--H-CHCCCCCHCCCC-------TCCSSHHHH-HHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc--c-hhhhhhhhhhcc-------hhhhhhhHH-HHHH
Confidence 4444444 8899999999999999999999999987532210 0 000000000000 000 0 001 1122
Q ss_pred HHHH-H--hhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHH
Q 018933 181 VGFA-C--VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (348)
Q Consensus 181 v~~~-~--lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~ 232 (348)
+... . .+++.+|.- ++..---|...+.+..|++||..|......++
T Consensus 89 l~~a~~~E~~~~~~Y~~------~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~ly 137 (137)
T PF02915_consen 89 LEMAIKEEKDAYEFYAE------LARKAPDPEIRKLFEELAKEEKEHEDLLEKLY 137 (137)
T ss_dssp HHHHHHHHHTHHHHHHH------HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2221 1 223333322 22223347788999999999999999776653
No 47
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=77.56 E-value=42 Score=28.24 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=65.7
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHH
Q 018933 100 NLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAER 179 (348)
Q Consensus 100 ~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~ 179 (348)
.+-..++....+++.+..+...+.+|-.|++....++..++.+|.- ...... . ...|..+......+...
T Consensus 35 Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~----~~~~~~--~---~~~~~~~~~~~~~~~~~- 104 (154)
T cd07908 35 YIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRY----RSSSSD--K---FTYWTGKYVNYGESIKE- 104 (154)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc----hhhccc--c---CCcCCccccCCccCHHH-
Confidence 3334455555789999999999999999999999999998766631 110000 0 00011111111111111
Q ss_pred HHHHH-Hhh--HHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHH
Q 018933 180 LVGFA-CVE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 230 (348)
Q Consensus 180 lv~~~-~lE--gi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~ 230 (348)
++-+. .+| ++-||..-+- .-.=+.+..++..|..||..|......
T Consensus 105 ~L~~~~~~E~~ai~~Y~~~~~------~~~d~~~r~ll~~I~~eE~~H~~~L~~ 152 (154)
T cd07908 105 MLKLDIASEKAAIAKYKRQAE------TIKDPYIRALLNRIILDEKLHIKILEE 152 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222 233 4555444332 122377888999999999999875543
No 48
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=76.83 E-value=47 Score=28.45 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhHH
Q 018933 110 QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGI 189 (348)
Q Consensus 110 ~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi 189 (348)
..++.+..+...+.+|--|.+..+..+..++.++.- ..| +-+ .+....+...-+..-...|.-
T Consensus 51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g----~pw--~~~-----------yv~~~~d~~~~L~~ni~aE~~ 113 (156)
T cd01051 51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG----VPW--TAA-----------YIQSSGNLVADLRSNIAAESR 113 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CcC--CCc-----------ccCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999999988755431 112 111 111111222222222223321
Q ss_pred HHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHH
Q 018933 190 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (348)
Q Consensus 190 ~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l 235 (348)
.-..|.-++.... =|++..++.+|..||..|..-...++..+
T Consensus 114 -Ai~~Y~~l~~~~~---Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 114 -ARLTYERLYEMTD---DPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred -HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111222222222 49999999999999999999877776543
No 49
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=76.82 E-value=64 Score=29.95 Aligned_cols=144 Identities=19% Similarity=0.143 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcH
Q 018933 81 HFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKEKHRLFNAIENIP 157 (348)
Q Consensus 81 ~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~---~d~~e~~~~~~~~~~~p 157 (348)
+.+..+-..|-.++....+..- ...+.+++|+.+.=...++.+|+.|++.=..+++.+. .+.. +
T Consensus 27 ~~~nalS~~fP~GE~ffi~svr-~~~~~i~D~~L~~~i~~FIgQEA~H~r~H~~~n~~l~~~G~~~~------------~ 93 (253)
T PF10118_consen 27 HFFNALSLLFPEGERFFIRSVR-RARPQIKDPELREEIKGFIGQEAMHSREHRKFNEALEAQGYDVR------------P 93 (253)
T ss_pred HHHHHHHHhhhhhHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc------------H
Confidence 3444444456667776666653 5778899999998888888999999998888777662 1211 1
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhhHHHHHhHHHHHH--HHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHH
Q 018933 158 CVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (348)
Q Consensus 158 ~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l 235 (348)
.+.+......+.+..-.+....|..-+++|..-..-|=.++- .+-..|.=|.+..+..|=+--|.=|..-+--+++.+
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~La~taalEH~TA~la~~~L~~~~~~~~~adp~~~~Lw~WHa~EE~EHksVAfDvy~~~ 173 (253)
T PF10118_consen 94 FLEKMEKLFLKFLEKRLSLKFQLAYTAALEHFTAVLAEWLLNNPELLFAGADPEMRDLWRWHAAEEVEHKSVAFDVYQAV 173 (253)
T ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112222322122334444445788753322222221 111246668899999999999999998888888877
Q ss_pred Hh
Q 018933 236 RK 237 (348)
Q Consensus 236 ~~ 237 (348)
..
T Consensus 174 ~g 175 (253)
T PF10118_consen 174 GG 175 (253)
T ss_pred cC
Confidence 64
No 50
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=72.71 E-value=12 Score=31.56 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=46.8
Q ss_pred HHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh-------------------HHHHHHHHHHHHHHHHHHHH
Q 018933 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------------------WQKVHHMVHEAVEIETQFVC 260 (348)
Q Consensus 200 ~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~-------------------~~~i~~l~~eav~~E~~~~~ 260 (348)
.+..++.-|.+++.+..+++||..|......++..+...+. ...+.++++.++..|..-+.
T Consensus 39 ~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~ 118 (154)
T cd07908 39 HLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIA 118 (154)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccccCCcCCccccCCccCHHHHHHHHHHHHHHHHH
Confidence 34455677999999999999999999999999887653222 12356688889999987664
No 51
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=63.19 E-value=58 Score=31.57 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=34.6
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChH
Q 018933 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSK 144 (348)
Q Consensus 104 ~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~-d~~ 144 (348)
.++....+|-+...++..+.+|+.|..+|+.++..++. ||+
T Consensus 176 ~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd 217 (330)
T PF03405_consen 176 RLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPD 217 (330)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcH
Confidence 45556689999999999999999999999999998862 443
No 52
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=57.53 E-value=1.6e+02 Score=27.17 Aligned_cols=174 Identities=11% Similarity=0.015 Sum_probs=104.5
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 018933 105 FLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA 184 (348)
Q Consensus 105 ~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~ 184 (348)
.....|..|.+..++..+-+|.=|++.+-.+...+..+.+ +-+. +..+|.- -|+-.+...- ..+|+..++..
T Consensus 15 W~~~AP~LEediAlanialD~lGhAr~~y~~a~el~g~~e---d~La-~~R~~~~-frn~~l~e~P--~gdwa~tv~r~- 86 (237)
T TIGR02158 15 WCGHAPELEEDIALANIALDLLGHARMFLSLAGQLGGGDE---DTLA-FFRDEAE-FRNLRLTELP--NGDFALTIARQ- 86 (237)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH---HHHH-HhcChHH-hhhhHHHhCC--CCCHHHHHHHH-
Confidence 4456778889999999999999999999999999954322 2222 2222221 1111122111 22455444432
Q ss_pred HhhHHHHHhHHHHHH--HHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 018933 185 CVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEA 262 (348)
Q Consensus 185 ~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eav~~E~~~~~~~ 262 (348)
+|+..+..+. .| .+.--+.++.+..+|++.|..|..++...+..|... .++-++.+.+|++.=--++...
T Consensus 87 -----~l~d~~~~~~l~~L-~~ss~~pla~ia~K~~kEe~yH~~h~~~w~~rL~~g--t~es~~r~Q~Ald~~wp~~~el 158 (237)
T TIGR02158 87 -----FLYDAYKVLLLEAL-TQSRDVPLAAIAAKALKEARYHLQHAKTWLERLGLG--TEESHRRLQEALNELWPYTAEL 158 (237)
T ss_pred -----HHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555443 22 345568899999999999999999999988877643 2344445555555444444444
Q ss_pred cCC---------CCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 018933 263 LPC---------ALIGMNSSLMSQYIKFVADRLLVALGCQR 294 (348)
Q Consensus 263 ~~~---------~~~Gl~~~~~~~yi~y~an~~L~~lG~~~ 294 (348)
|+. .-++.+.+.+.+--.-.....|..+|++-
T Consensus 159 F~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~~l~~agL~~ 199 (237)
T TIGR02158 159 FEAGPIDEELAEAGIAVDPATLQAAWEKEVNAVLNEATLTL 199 (237)
T ss_pred cCCCchHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 421 11223455565544446677788898875
No 53
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=55.84 E-value=63 Score=31.84 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChH
Q 018933 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSK 144 (348)
Q Consensus 103 ~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~-d~~ 144 (348)
.+++....+|-+....+..+.+|+.|..+|++|++.++. ||+
T Consensus 232 arlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd 274 (390)
T PLN00179 232 ARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPD 274 (390)
T ss_pred HHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCcc
Confidence 346666678888889999999999999999999998873 665
No 54
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=55.69 E-value=91 Score=29.77 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=33.9
Q ss_pred HHHhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChH
Q 018933 104 RFLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSK 144 (348)
Q Consensus 104 ~~~~~~--~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~-d~~ 144 (348)
.+...+ ..|-++..++..+.+|+.|..+|+.+++.++. +|+
T Consensus 168 nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~ 211 (297)
T cd01050 168 NTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPD 211 (297)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 344555 88989999999999999999999999998863 554
No 55
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=54.56 E-value=8.2 Score=23.65 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=16.5
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 018933 256 TQFVCEALPCALIGMNSSLMSQYIKFV 282 (348)
Q Consensus 256 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~ 282 (348)
.+|+.-+..---.|++.+++..|+++.
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455543333345799999999999864
No 56
>PF13668 Ferritin_2: Ferritin-like domain
Probab=50.49 E-value=1.4e+02 Score=24.38 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=59.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 018933 108 DIQIPEARAFYGFQIAMENIHSEMYSLLLE--TYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFAC 185 (348)
Q Consensus 108 ~~~~~E~~~~~~~q~~~E~iH~esYs~il~--~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~ 185 (348)
...+++.+.++.....+|..|.+..+..+. .-...|. |+. -..-+.++.+++.. -..
T Consensus 34 ~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~~~~~~~~-----~~~-------------~~~~~~~~~~~L~~---A~~ 92 (137)
T PF13668_consen 34 AALDPEVRDLFQEIADQEQGHVDFLQAALEGGRPVPPPA-----YDF-------------PFDPFTDDASFLRL---AYT 92 (137)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----ccc-------------ccCCCCCHHHHHHH---HHH
Confidence 456788999999999999999999999986 1112221 222 00011222333221 124
Q ss_pred hhHH--HHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHH
Q 018933 186 VEGI--FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (348)
Q Consensus 186 lEgi--~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~ 232 (348)
+|.+ -+|.|.+.. -.=|.+..+..-|...|..|......++
T Consensus 93 ~E~~~~~~Y~g~~~~------~~~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 93 LEDVGVSAYKGAAPQ------IEDPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5654 333333222 1136688999999999999999777654
No 57
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=48.67 E-value=1.6e+02 Score=25.21 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=31.7
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018933 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY 139 (348)
Q Consensus 104 ~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~ 139 (348)
.+...+.+|.++..+.+.+.+|..|.+.|..+++.+
T Consensus 120 ~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 120 RLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667899999999999999999999999998864
No 58
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=46.62 E-value=83 Score=26.08 Aligned_cols=74 Identities=14% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhHHH---------HHHHHHHHHHHHHHHH
Q 018933 189 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQK---------VHHMVHEAVEIETQFV 259 (348)
Q Consensus 189 i~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~~~---------i~~l~~eav~~E~~~~ 259 (348)
...+.-|....+..+..-+|+++..+.-+..||..|..-....+..+--.|+-.. +.++++.+++.|...+
T Consensus 18 ~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~~~~~~~l~~~l~~E~~~~ 97 (153)
T cd00907 18 LTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIGEDVPEMLENDLALEYEAI 97 (153)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcCCCHHHHHHHHHHHHHHHH
Q ss_pred HHh
Q 018933 260 CEA 262 (348)
Q Consensus 260 ~~~ 262 (348)
...
T Consensus 98 ~~y 100 (153)
T cd00907 98 AAL 100 (153)
T ss_pred HHH
No 59
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=45.85 E-value=1.3e+02 Score=24.31 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=38.5
Q ss_pred HhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 018933 202 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFV 259 (348)
Q Consensus 202 ~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eav~~E~~~~ 259 (348)
++..-+|+++..++.++..|..|......++.. .+ ..+.+++..+++.|..-.
T Consensus 27 a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~----i~-~~~~~~le~a~~~E~~~~ 79 (123)
T cd01046 27 AQREGYPEVAEELKRIAMEEAEHAARFAELLGK----VS-EDTKENLEMMLEGEAGAN 79 (123)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc-ccHHHHHHHHHHhHHHHH
Confidence 555568999999999999999999866654322 21 456777777777776543
No 60
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=45.51 E-value=68 Score=24.95 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhHHHHHhHHHHHHHHHhcC
Q 018933 126 NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205 (348)
Q Consensus 126 ~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g 205 (348)
..|...|.++++.++.|++.. ...+.+ .|....-.++..........+...+-++..+|.+.-...=...-.+++.|
T Consensus 16 ~~H~~Lf~~~L~~~Gi~~~~~-~~~~~~--~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r~g 92 (106)
T PF14518_consen 16 RSHPELFRRFLRALGIDDEPG-AYRDPY--PPETLALINLFLALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRRLG 92 (106)
T ss_dssp G-HHHHHHHHHHHTT-----T-T-------HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHcCCCCccc-cccccC--CHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHHcC
Confidence 469999999999998665411 000101 12222222322222222223445555556788874433222233555544
No 61
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=40.17 E-value=31 Score=31.52 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 018933 199 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (348)
Q Consensus 199 ~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e 238 (348)
|++ +.+.-......|+-|+++|.+|....+++++.+-..
T Consensus 20 ySi-~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~ 58 (227)
T PF12902_consen 20 YSI-KPGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGS 58 (227)
T ss_dssp HHB-S-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ccc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344 344445588999999999999999999999888544
No 62
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=38.87 E-value=34 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=18.0
Q ss_pred cchHHHhcCCHHHHHHHHHHHH
Q 018933 67 QDVQHWERLLDSEKHFISHVLA 88 (348)
Q Consensus 67 ~D~~d~~~L~~~er~~~~~~la 88 (348)
+.+.+|..|++.+|..+...|.
T Consensus 25 dEI~~W~~~s~~er~~i~~~l~ 46 (51)
T PF06945_consen 25 DEIRDWKSMSDDERRAILARLR 46 (51)
T ss_pred HHHHHHhhCCHHHHHHHHHHHH
Confidence 4578999999999998877654
No 63
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=37.76 E-value=1.8e+02 Score=21.94 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=13.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHH
Q 018933 108 DIQIPEARAFYGFQIAMENIHSEMYS 133 (348)
Q Consensus 108 ~~~~~E~~~~~~~q~~~E~iH~esYs 133 (348)
.+.+++.+.++...+..|..|...+.
T Consensus 102 ~~~d~~~~~~~~~~~~~E~~H~~~~~ 127 (130)
T cd00657 102 QADDPELRRLLERILADEQRHAAWFR 127 (130)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555443
No 64
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=37.68 E-value=1.5e+02 Score=24.23 Aligned_cols=56 Identities=13% Similarity=-0.046 Sum_probs=40.4
Q ss_pred HhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhh---h--hHHHHHHHHHHHHHHHHH
Q 018933 202 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR---L--HWQKVHHMVHEAVEIETQ 257 (348)
Q Consensus 202 ~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e---~--~~~~i~~l~~eav~~E~~ 257 (348)
++.--++|++..++.++.+|..|.......+..+... + +...+.+.+..+.+.|..
T Consensus 27 a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~~E~~ 87 (134)
T cd01041 27 ARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIAGETY 87 (134)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHHhhHH
Confidence 4444589999999999999999998776666554322 1 124567778888887763
No 65
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=34.63 E-value=2.5e+02 Score=22.71 Aligned_cols=95 Identities=14% Similarity=-0.041 Sum_probs=58.2
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 018933 105 FLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA 184 (348)
Q Consensus 105 ~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~ 184 (348)
.+..-.-+++..++..|+..|..|++.|..++..+ |....+.+......
T Consensus 26 ~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i---~~~~~~~le~a~~~---------------------------- 74 (123)
T cd01046 26 VAQREGYPEVAEELKRIAMEEAEHAARFAELLGKV---SEDTKENLEMMLEG---------------------------- 74 (123)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHh----------------------------
Confidence 44455668899999999999999999998866332 11111111111110
Q ss_pred HhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHH
Q 018933 185 CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (348)
Q Consensus 185 ~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~ 233 (348)
|.-- ...+.-+...++.-....+...++.|.+||..|......++.
T Consensus 75 --E~~~-~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 75 --EAGA-NEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred --HHHH-HHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1000 011222223355556788899999999999999997776654
No 66
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=34.54 E-value=2e+02 Score=26.86 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHhcC-chHHHHHHHHH-HHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHH
Q 018933 156 IPCVAQKAKWALDWIHS-SDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (348)
Q Consensus 156 ~p~l~~k~~~i~~~~~~-~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~ 233 (348)
.|.-+.+.+|-. +.+ ......+++++ +.++++.--..-..+ ...=--|.........+-.|++|......++.
T Consensus 36 i~~~~D~~~~~~--Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i---~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~ 110 (281)
T PF00268_consen 36 IDMSKDIKDWKK--LSEEEREAYKRILAFFAQLDSLVSENLLPNI---MPEITSPEIRAFLTFQAFMEAIHAESYSYILD 110 (281)
T ss_dssp S-GGGHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhHHHHHh--CCHHHHHHHHHHHHHHHHHHhHHHhhHHHHH---HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 322 23345555555 567876543321222 22222377788888999999999999999998
Q ss_pred HHH
Q 018933 234 LLR 236 (348)
Q Consensus 234 ~l~ 236 (348)
.+.
T Consensus 111 ~l~ 113 (281)
T PF00268_consen 111 SLG 113 (281)
T ss_dssp HHS
T ss_pred Hhc
Confidence 887
No 67
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=33.86 E-value=2.7e+02 Score=26.37 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=44.7
Q ss_pred HHHhcCCcCccccCcccchH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 018933 51 KKAQASFWTAEEVDLSQDVQ-HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHS 129 (348)
Q Consensus 51 kk~~~~fW~peeid~s~D~~-d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~ 129 (348)
.....+=|+..-|.-+.|.. |.. ..+ ++ ...++..-.++.....+|.+|-.+++-+..|.+|.
T Consensus 121 ~ds~G~PWt~~yv~~sGdl~aDL~----------~Ni----aA--E~~AR~~yerL~~mTdDpgvkd~L~FLl~Re~vH~ 184 (283)
T PF05067_consen 121 VDSNGVPWTAAYVQASGDLIADLR----------SNI----AA--EQRARLQYERLYEMTDDPGVKDMLSFLLAREIVHQ 184 (283)
T ss_dssp B-TTS-B-BGGG----S-HHHHHH----------HHH----HH--HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcccchhhhhcCCHHHHHH----------HHH----HH--HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 34556788888887777654 221 111 11 12234445577888899999999999999999999
Q ss_pred HHHHHHHHHhc
Q 018933 130 EMYSLLLETYI 140 (348)
Q Consensus 130 esYs~il~~~~ 140 (348)
..|..-|+++-
T Consensus 185 ~~f~~ALe~l~ 195 (283)
T PF05067_consen 185 QQFGKALEELQ 195 (283)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999883
No 68
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=32.65 E-value=2.5e+02 Score=22.13 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 018933 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLL 135 (348)
Q Consensus 103 ~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~i 135 (348)
..++..+++|+++..+...+.+|..|...+..+
T Consensus 104 ~~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 104 AELARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778889999999999999999999887654
No 69
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.39 E-value=3.5e+02 Score=23.51 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=59.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHH
Q 018933 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAER 179 (348)
Q Consensus 103 ~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~---~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~ 179 (348)
...+..-.-|++.-.+-.++..|.+|+...-.++.-+. .|..+ .+-..+ . .+.+
T Consensus 27 A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~~~~~~~~e--Nl~~ai-----------------e-GE~~--- 83 (166)
T COG1592 27 AKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLLLVLGDTRE--NLEEAI-----------------E-GETY--- 83 (166)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHH--HHHHHH-----------------c-cchH---
Confidence 45566667788888899999999999999988887532 12211 010000 0 0000
Q ss_pred HHHHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 018933 180 LVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (348)
Q Consensus 180 lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~ 236 (348)
|--..|..|+-.. ...| ....+.-++.+.|||.+|......++..+.
T Consensus 84 -------e~~emyp~~ae~A--~~~g-~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~ 130 (166)
T COG1592 84 -------EITEMYPVFAEVA--EEEG-FKEAARSFRAAAKAEKRHAEMFRGLLERLE 130 (166)
T ss_pred -------HHHHhChHHHHHH--HHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000111111110 1112 567788889999999999998777766554
No 70
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=31.25 E-value=2.8e+02 Score=24.15 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=38.4
Q ss_pred cCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhh-----------hh--HHHHHHHHHHHHHHHHHHHH
Q 018933 204 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR-----------LH--WQKVHHMVHEAVEIETQFVC 260 (348)
Q Consensus 204 ~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e-----------~~--~~~i~~l~~eav~~E~~~~~ 260 (348)
..=|||++.-++.=+.+|..|.- .+++.+..+ |+ ...+.++++.+++.|.....
T Consensus 33 ~~~l~G~A~f~~~qa~EE~~H~~---k~~~yl~~~g~~~~l~~I~~P~~~~~s~~e~f~~tlehEq~vt~ 99 (167)
T COG1528 33 SESLPGFAKFLRAQAQEELTHAM---KLFNYLNERGARPELKAIEAPPNKFSSLKELFEKTLEHEQKVTS 99 (167)
T ss_pred hcCChhHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCceecCcCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 45599999999999999999976 566666532 11 13466777777777776543
No 71
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=31.22 E-value=49 Score=23.83 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=27.0
Q ss_pred HHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHH
Q 018933 49 MYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVL 87 (348)
Q Consensus 49 lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~l 87 (348)
+.|+....+|.+.. ...|..+++++|..++..+
T Consensus 39 ~LKn~I~~~W~~~~------~~~~~~~~~~~k~~Ik~~l 71 (77)
T PF03810_consen 39 LLKNLIKKNWSPSK------QKGWSQLPEEEKEQIKSQL 71 (77)
T ss_dssp HHHHHHHHSGGHHH------HHHHHGSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhh------ccCCCCCCHHHHHHHHHHH
Confidence 34667778899877 7778999999999999865
No 72
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=29.93 E-value=2.4e+02 Score=27.17 Aligned_cols=78 Identities=18% Similarity=0.323 Sum_probs=42.3
Q ss_pred cCcccchHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018933 63 VDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFL---NDIQIPEARAFYGFQIAMENIHSEMYSLLLET 138 (348)
Q Consensus 63 id~s~D~~d~~-~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~---~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~ 138 (348)
++.-+++.+|. +.-+..+....+++++ +.++++.--.....+. ..=.-|-........+-+|++|......+++.
T Consensus 142 ~p~i~~K~~~~~~~~~~~~~~~~~lv~~-~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 220 (330)
T PTZ00211 142 IPAIKKKAEWAAKWINSSNSFAERLVAF-AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSH 220 (330)
T ss_pred CHHHHHHHHHHHHHHhcchHHHHHHHHH-HHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344555553 2112233445555544 3477666544322221 11111333444667778999999999999998
Q ss_pred hcC
Q 018933 139 YIK 141 (348)
Q Consensus 139 ~~~ 141 (348)
+..
T Consensus 221 l~~ 223 (330)
T PTZ00211 221 LKN 223 (330)
T ss_pred Hhc
Confidence 864
No 73
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=27.87 E-value=1.9e+02 Score=27.58 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=38.3
Q ss_pred hHHHHHHHHH-HHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 018933 174 DSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (348)
Q Consensus 174 ~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~ 236 (348)
..+...++++ ..++++.--.+-.. +...=--|-...........|++|....+.++..+.
T Consensus 56 r~~~~~~l~~~~~~D~~v~~~~~~~---~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~ 116 (324)
T PRK09614 56 KNLYTRVFGGLTLLDTLQNNNGMPN---LMPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLC 116 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH---HHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455666665 56777654332111 111111267778888889999999999999988764
No 74
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=26.19 E-value=1.2e+02 Score=24.50 Aligned_cols=40 Identities=20% Similarity=0.014 Sum_probs=31.1
Q ss_pred HHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018933 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL 239 (348)
Q Consensus 200 ~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~ 239 (348)
.++..-.-|.+.+++..++.+|..|..+...++..+...+
T Consensus 19 ~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 19 KLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 3344444577999999999999999999988887765443
No 75
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=25.10 E-value=5.5e+02 Score=23.72 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=38.0
Q ss_pred HHHHHHHH-HHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 018933 176 FAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (348)
Q Consensus 176 ~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~ 237 (348)
....++++ +.++++.--..-..+... ---|-........+-+|++|+.....++..+..
T Consensus 47 ~~~~~la~~~~~d~~v~~~~~~~~~~~---~~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~ 106 (288)
T cd01049 47 FIKRVLAFLAALDSIVGENLVELFSRH---VQIPEARAFYGFQAFMENIHSESYSYILDTLGK 106 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45555555 567776432221111111 124677778889999999999999999988864
No 76
>PF13668 Ferritin_2: Ferritin-like domain
Probab=24.13 E-value=3.9e+02 Score=21.62 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=26.5
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018933 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 136 (348)
Q Consensus 104 ~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il 136 (348)
...+.+++|+.+..+...+..|+.|......++
T Consensus 103 g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 103 GAAPQIEDPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888889999988776654
No 77
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=22.07 E-value=1.5e+02 Score=25.76 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=30.0
Q ss_pred HHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHH
Q 018933 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (348)
Q Consensus 200 ~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~ 234 (348)
-.+++--+|.++...+.|+.+|..|..-...++..
T Consensus 28 ~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~ 62 (166)
T COG1592 28 KVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGK 62 (166)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34677779999999999999999999988887764
No 78
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=22.06 E-value=7.5e+02 Score=24.78 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=49.2
Q ss_pred HHhhHHHHHhHHHHHHHHHhcCCCCc-hHHHHHHHHhhhhhhHHHHHHHHHHHH----hhh--h---HHHHH--HHHHHH
Q 018933 184 ACVEGIFFSGSFCAIFWLKKRGLMPG-LTFSNELISRDEGLHCDFACLLYSLLR----KRL--H---WQKVH--HMVHEA 251 (348)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~l~g-~~~~i~~I~rDE~~H~~f~~~l~~~l~----~e~--~---~~~i~--~l~~ea 251 (348)
...|.+.-|+||+..--.-.-.++|| +...+..|.+.-.+-...-..++..-- ... . .+.|. ..+.+|
T Consensus 123 Ig~E~~RrygGFYGpTcVvDFAliPGSTsNVVN~IL~~~DIp~~hkqaiLaaKSWGMNTSYg~G~~Fa~~iE~g~t~~eA 202 (499)
T PF09959_consen 123 IGKESARRYGGFYGPTCVVDFALIPGSTSNVVNQILKKTDIPVDHKQAILAAKSWGMNTSYGIGDVFAHAIEEGKTLAEA 202 (499)
T ss_pred hhHHHHHHhcCccCCceeeeeeecCCchHHHHHHHHHhCCCcHHHHHHHHHhcccCCccccccHHHHHHHHHcCCCHHHH
Confidence 35799999999998743344467897 566778888876665555554432100 000 0 12222 356788
Q ss_pred HHHHHHHHHHhc
Q 018933 252 VEIETQFVCEAL 263 (348)
Q Consensus 252 v~~E~~~~~~~~ 263 (348)
++.|++-+..++
T Consensus 203 ~~~Ei~~~q~iy 214 (499)
T PF09959_consen 203 VKKEIKMMQFIY 214 (499)
T ss_pred HHHHHHHHHHHH
Confidence 888887776665
No 79
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=22.02 E-value=3.8e+02 Score=25.72 Aligned_cols=76 Identities=16% Similarity=0.082 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHHhcC-chHHHHHHHHH-HHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHH
Q 018933 156 IPCVAQKAKWALDWIHS-SDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (348)
Q Consensus 156 ~p~l~~k~~~i~~~~~~-~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~ 233 (348)
.|--..+.+|-. +.+ ...+..+++++ +.++++..-.+-..++.-. . -|.........+--|++|....+.++.
T Consensus 39 I~ls~D~~dw~~--Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~--~-~~e~~~~l~~~~~~E~iHs~sYs~il~ 113 (322)
T PRK13967 39 IPLSNDLASWQT--LSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDA--V-TPHEEAVLTNMAFMESVHAKSYSSIFS 113 (322)
T ss_pred cCchhhHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc--C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555521 332 23456666666 5678877644432222111 1 255566778888889999999999998
Q ss_pred HHH
Q 018933 234 LLR 236 (348)
Q Consensus 234 ~l~ 236 (348)
.+.
T Consensus 114 tl~ 116 (322)
T PRK13967 114 TLC 116 (322)
T ss_pred HhC
Confidence 874
No 80
>PLN02492 ribonucleoside-diphosphate reductase
Probab=21.53 E-value=4.3e+02 Score=25.25 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=42.2
Q ss_pred cCcccchHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018933 63 VDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFL---NDIQIPEARAFYGFQIAMENIHSEMYSLLLET 138 (348)
Q Consensus 63 id~s~D~~d~~-~L~~~er~~~~~~la~l~~~d~~v~~~l~~~~~---~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~ 138 (348)
.+.-+++.+|. +--+.....+.+++++. .++++.--.....+. ..=.-|-........+-+|++|......+++.
T Consensus 131 ~p~l~~K~~~~~~~~~~~~~~~~~lva~~-~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~ 209 (324)
T PLN02492 131 IPCVAKKADWALRWIDSSASFAERLVAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 209 (324)
T ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhhHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344555553 22223344555555553 567666543322221 11111333344567778999999999999988
Q ss_pred hcC
Q 018933 139 YIK 141 (348)
Q Consensus 139 ~~~ 141 (348)
+..
T Consensus 210 l~~ 212 (324)
T PLN02492 210 LKN 212 (324)
T ss_pred HHh
Confidence 863
No 81
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=21.24 E-value=8.2e+02 Score=24.30 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=42.1
Q ss_pred cchHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018933 67 QDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAA---RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (348)
Q Consensus 67 ~D~~d~~-~L~~~er~~~~~~la~l~~~d~~v~~~l~~---~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~ 140 (348)
.++.+|- +-.+..+..+...+...+.++++.--.... .|...=.-|-........+-+|++|......+++.+.
T Consensus 220 ~~k~~~~~~~~~~~~~~~~~~lv~~~~lEgi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~ 297 (410)
T PRK12759 220 TDKIDFMMDADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYC 297 (410)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455553 223333433445455666677766533221 1222111233444566777899999999999999885
No 82
>PF06556 ASFV_p27: IAP-like protein p27 C-terminus; InterPro: IPR010549 This entry represents the C-terminal region of the African swine fever virus (ASFV) IAP-like protein p27. This domain is found in conjunction with IPR001370 from INTERPRO. It has been suggested that the domain may be incoded by the gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros [].
Probab=20.85 E-value=1.1e+02 Score=24.45 Aligned_cols=44 Identities=16% Similarity=0.406 Sum_probs=26.2
Q ss_pred HHHHHHcCCCCCCC---CCCCc--chhhhcc-cccCCCcccccccccccc
Q 018933 284 DRLLVALGCQRKYN---VENPF--DWMEFIS-LQGKANFFERRVGDYQKA 327 (348)
Q Consensus 284 n~~L~~lG~~~~y~---~~nP~--~w~~~~~-~~~~~nFFE~~~t~Y~~~ 327 (348)
.+||+.+|+.+.|- -.|-+ ||-..+. ..-+-+||--+..+|--+
T Consensus 34 hKRLedmgfsK~fmrFiLaNafiPpyrkyihKiiLNEryFtFkf~ayLls 83 (131)
T PF06556_consen 34 HKRLEDMGFSKCFMRFILANAFIPPYRKYIHKIILNERYFTFKFNAYLLS 83 (131)
T ss_pred hhhHHHcCCCcceEEEEeecccCCcHHHHHHHHhhccceEEEehhhhhhh
Confidence 37999999999773 24433 3533321 123456777777777543
Done!