RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018933
(348 letters)
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase,
ribonucleotide reductase, dinuclear metal-cluster; 2.2A
{Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A
1xsm_A 2uw2_A 3hf1_A 2vux_A
Length = 390
Score = 506 bits (1305), Expect = 0.0
Identities = 211/345 (61%), Positives = 259/345 (75%), Gaps = 5/345 (1%)
Query: 5 KNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVD 64
+ ++ + + + EP+L E +RF +FPI Y +W+MYKKA+ASFWTAEEVD
Sbjct: 50 RIFQDSAELESKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVD 109
Query: 65 LSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAM 124
LS+D+QHWE L E+HFISHVLAFFAASDGIV ENL RF ++Q+ EAR FYGFQIAM
Sbjct: 110 LSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAM 169
Query: 125 ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSD-SFAERLVGF 183
ENIHSEMYSLL++TYIKD KE+ LFNAIE +PCV +KA WAL WI + ++ ER+V F
Sbjct: 170 ENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAF 229
Query: 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQK 243
A VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++ L + Q+
Sbjct: 230 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQR 289
Query: 244 VHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFD 303
V ++ AV IE +F+ EALP LIGMN +LM QYI+FVADRL++ LG + + VENPFD
Sbjct: 290 VREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFD 349
Query: 304 WMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF 348
+ME ISL+GK NFFE+RVG+YQ+ VMS+ F LD DF
Sbjct: 350 FMENISLEGKTNFFEKRVGEYQRMGVMSNSTENS----FTLDADF 390
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb
PY03671, S genomics consortium, SGC, oxidoreductase;
2.70A {Plasmodium yoelii yoelii}
Length = 349
Score = 502 bits (1295), Expect = e-180
Identities = 206/343 (60%), Positives = 259/343 (75%), Gaps = 4/343 (1%)
Query: 6 NETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDL 65
+ + ++ +E E IL +++ RF + PI Y +VW YKKA+ASFWTAEE+DL
Sbjct: 11 ASFSKQEKEFSDFQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDL 70
Query: 66 SQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAME 125
S D++ +E+L +EKHFI HVLAFFAASDGIVLENLA++FL +++I EA+ FY FQIA+E
Sbjct: 71 SSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVE 130
Query: 126 NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFAC 185
NIHSE YSLL++ YIKD KE+ LF+AIENIP + KA WA WI+ ++SFAER+V AC
Sbjct: 131 NIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVANAC 190
Query: 186 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVH 245
VEGI FSGSFCAIFW KK+ + GLTFSNELISRDEGLH DF CL+YSLL +L V
Sbjct: 191 VEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQ 250
Query: 246 HMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWM 305
++V EAVE+E F+CE+LPC LIGMNS LMSQYI+FVADRLL LGC + ++ +NPF+WM
Sbjct: 251 NIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWM 310
Query: 306 EFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF 348
+ ISLQGK NFFE+RV DYQK+ VM+ K VF L+ DF
Sbjct: 311 DLISLQGKTNFFEKRVADYQKSGVMAQ----RKEQVFSLNTDF 349
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 491 bits (1266), Expect = e-175
Identities = 202/345 (58%), Positives = 254/345 (73%), Gaps = 3/345 (0%)
Query: 6 NETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDL 65
+E E +EP+L E +R +FPI+Y ++W+ YK+A+ASFWTAEE+DL
Sbjct: 76 KAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDL 135
Query: 66 SQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAM 124
S+D+ W R+ ++E+ FIS VLAFFAASDGIV ENL F ++QIPEA++FYGFQI +
Sbjct: 136 SKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMI 195
Query: 125 ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGF 183
ENIHSE YSLL++TYIKD KE LFNAI IP + +KA+WAL WI +D+ F ERLV F
Sbjct: 196 ENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAF 255
Query: 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQK 243
A +EG+FFSGSF +IFWLKKRG+MPGLTFSNELI RDEGLH DFACLL++ L+ +
Sbjct: 256 ASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAI 315
Query: 244 VHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFD 303
V +V EAVEIE ++ +ALP AL+GMN+ LM+QY++FVADRLLVA G ++ Y VENPFD
Sbjct: 316 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFD 375
Query: 304 WMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF 348
+ME ISL GK NFFE+RV DYQKA VMS E F +EDF
Sbjct: 376 FMENISLAGKTNFFEKRVSDYQKAGVMSKSTKQEAG-AFTFNEDF 419
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase,
epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus
4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Length = 324
Score = 483 bits (1245), Expect = e-173
Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 8/320 (2%)
Query: 16 EQGEQEQEDQEPILME-QNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWER 74
E ++ ++ + + + W A + L++D +
Sbjct: 4 HHHHHHLESTSLYKKAGSAMSKLLYVRDHEGFACLTVETHRNRWFAAHIVLTKDCGCLKL 63
Query: 75 LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSL 134
L + + F + F A ++ +V N+ + + + +Y Q AMEN+H E Y+
Sbjct: 64 LNERDLEFYKFLFTFLAMAEKLVNFNID-ELVTSFESHDIDHYYTEQKAMENVHGETYAN 122
Query: 135 LLETYIKDSKE-KHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSG 193
+L + + AI + K W D + ++ + E+++ F +EGIFF
Sbjct: 123 ILNMLFDGDRAAMNAYAEAIMTDEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFIS 182
Query: 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK---RLHWQKVHHMVHE 250
SF +I L+ RGLMPG+ +N ISRDE LH A LLY+ + R + +
Sbjct: 183 SFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPRATWIQELFRT 242
Query: 251 AVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDW-MEFIS 309
AVE+ET F+ EA + ++ + Q+++ ADR+L +G Y P D + +++
Sbjct: 243 AVEVETAFI-EARGEGVTLVDVRAIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMT 301
Query: 310 LQGKANFFERRVGDYQKASV 329
+ NFFE+ DY V
Sbjct: 302 SIKQTNFFEQESSDYTMLVV 321
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Length = 345
Score = 483 bits (1244), Expect = e-173
Identities = 145/349 (41%), Positives = 221/349 (63%), Gaps = 5/349 (1%)
Query: 1 MGSLKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTA 60
M + + +R ++ ++D E +LME ++RF MFPI+Y ++W YKK +ASFWTA
Sbjct: 1 MEAHNQFLKTFQKERHDMKEAEKD-EILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTA 59
Query: 61 EEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGF 120
EE++L++D + +++L D +K +I ++LA +SD +V + L F +Q PE ++FYGF
Sbjct: 60 EEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGF 119
Query: 121 QIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWI-HSSDSFAER 179
QI MENI+SE+YS++++ + KD K LF I N+P V KA + WI + +AER
Sbjct: 120 QIMMENIYSEVYSMMVDAFFKDPKNIP-LFKEIANLPEVKHKAAFIERWISNDDSLYAER 178
Query: 180 LVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL 239
LV FA EGIF +G++ ++FWL + +MPGL +N I RD G + DF+CLL++ LR +
Sbjct: 179 LVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKP 238
Query: 240 HWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE 299
+ + + ++ EAVEIE ++ +LP GM+ + YI+FVAD LL G ++ YN
Sbjct: 239 NPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV 298
Query: 300 NPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF 348
NPF++ME ++ GK FFE++V DYQKAS MS K F D+DF
Sbjct: 299 NPFEFMEDVATAGKTTFFEKKVSDYQKASDMSKSATPSKEINF--DDDF 345
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
activation, iron coupled radical, immune EVAS
replication, oxidoreductase; 1.70A {Chlamydia
trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Length = 346
Score = 464 bits (1197), Expect = e-165
Identities = 90/347 (25%), Positives = 163/347 (46%), Gaps = 27/347 (7%)
Query: 9 ENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQD 68
+ ++ +Q + + Q + PI+YK WE Y A+ W E+ + +D
Sbjct: 2 QADILDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKD 61
Query: 69 VQHW--ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMEN 126
++ W +RL + E+ I L FF+ ++ +V N+ + PEAR + Q E
Sbjct: 62 IELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEA 121
Query: 127 IHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIH-------------SS 173
+H+ + + E+ D KE +FNA + K + ++
Sbjct: 122 VHTHTFLYICESLGLDEKE---IFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGL 178
Query: 174 DSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232
F + LVG+ +EGIFF F I ++ M G+ + I RDE +H +F L
Sbjct: 179 QEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLI 238
Query: 233 SLLRKRLH-------WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADR 285
+ +++ Q++ ++ AV++E ++ + LP ++G+ +S+ Y++ +ADR
Sbjct: 239 NGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADR 298
Query: 286 LLVALGCQRKYNVENPFDWM-EFISLQGKANFFERRVGDYQKASVMS 331
L +G + Y+ +NPF WM E I L + NFFE RV +YQ A+ ++
Sbjct: 299 RLERIGLKPIYHTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLT 345
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide
reductase, oxidoreductase, DNA replication, iron,
DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Length = 311
Score = 455 bits (1171), Expect = e-162
Identities = 183/307 (59%), Positives = 235/307 (76%), Gaps = 1/307 (0%)
Query: 1 MGSLKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTA 60
+ + ++ E + + ++ + E IL ++ RF ++PI Y VW+ YKKA+ASFWTA
Sbjct: 6 ISKIPIFSKKEKKFSDLQKSKEAN-EKILSKETDRFTLYPILYPDVWDFYKKAEASFWTA 64
Query: 61 EEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGF 120
EE+DLS D++ +E+L D+EKHFI HVLAFFAASDGIVLENLA++FL ++I EA+ FY F
Sbjct: 65 EEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAF 124
Query: 121 QIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180
QIA+ENIHSE YSLL++ YIKD KE+ LF+AIENIP V KA WA WI+ ++SFAER+
Sbjct: 125 QIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERI 184
Query: 181 VGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240
V ACVEGI FSGSFCAIFW KK+ + GLTFSNELISRDEGLH DF CL+YSLL +L
Sbjct: 185 VANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP 244
Query: 241 WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVEN 300
+ V ++V EAVE+E F+CE+LPC LIGMNS LMSQYI+FVADRLL LG + ++ +N
Sbjct: 245 EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIFHAKN 304
Query: 301 PFDWMEF 307
PF+WM+
Sbjct: 305 PFNWMDL 311
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding,
HRRM2, oxidoreductase; 2.10A {Homo sapiens}
Length = 286
Score = 433 bits (1116), Expect = e-154
Identities = 187/285 (65%), Positives = 226/285 (79%), Gaps = 1/285 (0%)
Query: 22 QEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKH 81
+ EP+L E +RF +FPI Y +W+MYKKA+ASFWTAEEVDLS+D+QHWE L E++
Sbjct: 2 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 61
Query: 82 FISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK 141
FISHVLAFFAASDGIV ENL RF ++QI EAR FYGFQIAMENIHSEMYSLL++TYIK
Sbjct: 62 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIK 121
Query: 142 DSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAIFW 200
D KE+ LFNAIE +PCV +KA WAL WI ++ + ER+V FA VEGIFFSGSF +IFW
Sbjct: 122 DPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFW 181
Query: 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVC 260
LKKRGLMPGLTFSNELISRDEGLHCDFACL++ L + ++V ++ AV IE +F+
Sbjct: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLT 241
Query: 261 EALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWM 305
EALP LIGMN +LM QYI+FVADRL++ LG + + VENPFD+M
Sbjct: 242 EALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM 286
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide
reductase, manganese, oxidoreductase; 1.90A {Bacillus
subtilis}
Length = 350
Score = 385 bits (990), Expect = e-134
Identities = 65/343 (18%), Positives = 134/343 (39%), Gaps = 21/343 (6%)
Query: 20 QEQEDQEPILMEQNQRFCMF-PIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDS 78
+ +M + + Y + FW EE+ L+ D+ W+ L +
Sbjct: 12 SGLVPRGSHMMTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKN 71
Query: 79 EKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMEN-IHSEMYSLLLE 137
E+ VLA D + + +A F MEN +H++ YS +
Sbjct: 72 EQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFM 131
Query: 138 TYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSD-----SFAERLVGFACVEGI-FF 191
T + + +F ++ + +KA+ + + S + +V +E F+
Sbjct: 132 TLAPT-ETINEVFEWVKQNKYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVYLESFLFY 190
Query: 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEA 251
SG + +++ + LM N LI RDE +H + LL + + +K + A
Sbjct: 191 SGFYYPLYFYGQGKLMQSGEIIN-LILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFA 249
Query: 252 VEIETQFVCEALPCA-----LIGMNSSLMSQYIKFVADRLLVALGCQRKYNVE--NPFDW 304
+++ Q L +G++ + ++I++ A++ L+ LG + E NP
Sbjct: 250 IDLLNQLYENELEYTEDLYDQVGLSHD-VKKFIRYNANKALMNLGFDPYFEEEDINPIVL 308
Query: 305 MEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDED 347
+ +FF + Y+KA+V + +F F+ +++
Sbjct: 309 NGLNTKTKSHDFFSMKGNGYKKATVEPLK---DDDFYFEDEKE 348
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron,
DIIRON, carboxylate, oxidase, ligand, C monooxygenase;
HET: MYR; 1.90A {Mycobacterium tuberculosis}
Length = 323
Score = 341 bits (876), Expect = e-117
Identities = 47/329 (14%), Positives = 108/329 (32%), Gaps = 30/329 (9%)
Query: 19 EQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDS 78
+ L + P +++ A FW ++D ++D WE+L D
Sbjct: 8 HGMTRTRSGSLAAGGLNWASLP------LKLFAGGNAKFWHPADIDFTRDRADWEKLSDD 61
Query: 79 EKHFISHVLAFFAASDGIVLENLAARFLNDIQI---PEARAFYGFQIAMENIHSEMYSLL 135
E+ + + + F A + V E++ F++ ++ + E H++++ +
Sbjct: 62 ERDYATRLCTQFIAGEEAVTEDI-QPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMW 120
Query: 136 LETYIKDSKEKHRLFNAIENIPCVAQKAKWALDW-------IHSSDSFAERLVGF-ACVE 187
L+ L ++++P Q L S + V + VE
Sbjct: 121 LDAVGISED----LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVE 176
Query: 188 GIFFSGSFCAIF-WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR--LHWQKV 244
G+ + A +R ++PG+ I DE H + +W
Sbjct: 177 GMLALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVF 236
Query: 245 HHMVHEAVEIETQFVCEALPCALIGMNSSLMS-QYIKFVADRLLVALGCQRKYNVENPFD 303
++E + + + + E L ++++ D+ + G N
Sbjct: 237 ETRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFG--TISNARGRP- 293
Query: 304 WMEFISLQGKANFFERRVGDYQKASVMSS 332
+ I + E D + ++ ++
Sbjct: 294 -VAEIDVDYSPAQLEDTFADEDRRTLAAA 321
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide
reductase, four-helix bundle, dimanganese CLU
oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A
3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Length = 319
Score = 335 bits (861), Expect = e-115
Identities = 58/321 (18%), Positives = 111/321 (34%), Gaps = 28/321 (8%)
Query: 40 PIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLE 99
I + E++ + ++FW E+V LS D+ W+ L E+ V D +
Sbjct: 13 KISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNV 72
Query: 100 NLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCV 159
A + D P A ME +H+ YS + T +K+ + E +
Sbjct: 73 IGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLC-QTKDVDAAYAWSEENAPL 131
Query: 160 AQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISR 219
+KA+ D ++ + +E F F + RG + LI R
Sbjct: 132 QRKAQIIQQHYR-GDDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190
Query: 220 DEGLHCDFACLLYSLLRKRLH--WQK-----VHHMVHEAVEIETQFVCEALPCALIGMNS 272
DE +H + Y +++ ++ ++ E + E Q+ E +
Sbjct: 191 DEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAE---TPWA 247
Query: 273 SLMSQYIKFVADRLLVALGCQRKYNVE----NPFDWMEF-ISLQGKANFFERRVGDYQKA 327
+ ++ + A++ L+ LG + + E NP + +FF Y
Sbjct: 248 DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGSGSSYVMG 307
Query: 328 SVMSSLQNGEKNFVFKLDEDF 348
+ + DED+
Sbjct: 308 KAVET-----------EDEDW 317
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond,
metal binding protein; 1.63A {Corynebacterium
ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A
1kgn_A
Length = 329
Score = 320 bits (821), Expect = e-109
Identities = 59/320 (18%), Positives = 119/320 (37%), Gaps = 28/320 (8%)
Query: 41 IRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100
I ++ E++ + +FW E++ +S D+Q W ++ E+ V D I
Sbjct: 24 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTV 83
Query: 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVA 160
A L D + A Y ME++H++ YS + T + + F E +
Sbjct: 84 GAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST-PQINEAFRWSEENENLQ 142
Query: 161 QKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRD 220
+KAK + + + D ++ V +E F F +L R + LI RD
Sbjct: 143 RKAKIIMSYYN-GDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRD 201
Query: 221 EGLHCDFACLLYSLLRKRL--HWQK-----VHHMVHEAVEIETQFVCEALPCALIGMNSS 273
E +H + Y K+L Q+ ++++ E E ++ + +G
Sbjct: 202 ESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGWTED 259
Query: 274 LMSQYIKFVADRLLVALGCQRKYNVE----NPFDWMEF-ISLQGKANFFERRVGDYQKAS 328
+ +++++ A++ L LG + + + +P + +FF Y
Sbjct: 260 -VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGK 318
Query: 329 VMSSLQNGEKNFVFKLDEDF 348
+ D+D+
Sbjct: 319 AEDT-----------TDDDW 327
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1,
putative class I ribonucleotide reductase,
ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
{Bacillus halodurans c-125}
Length = 346
Score = 320 bits (822), Expect = e-108
Identities = 64/310 (20%), Positives = 130/310 (41%), Gaps = 19/310 (6%)
Query: 40 PIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLE 99
+R+ + +YK A+FWT E+++S D + + L ++E+ ++ A D +
Sbjct: 35 DVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQ-T 93
Query: 100 NLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCV 159
+ + R + A E +H++ YS +L + + + +F ++ +
Sbjct: 94 DYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPK-ATQDEIFEYWKHDDVL 152
Query: 160 AQKAKWALDWIH------SSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFS 213
++ ++ +D + +F E +V +EG+ F F + L + M +
Sbjct: 153 KERNEFIIDGYEKFVDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTM 212
Query: 214 NELISRDEGLHCDFACLLYSLLRKRL--HWQK-----VHHMVHEAVEIETQFVCEALPCA 266
I+RDE LH ++ L + V + +A ++E + +
Sbjct: 213 INYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDK 272
Query: 267 LIGMNSSLMSQYIKFVADRLLVALGCQRKYN--VENPFDWMEFIS--LQGKANFFERRVG 322
+ G+N M YI F+A++ V LG ++ Y NP W+ GK++FFE++
Sbjct: 273 IPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHNPMKWIRAYEDVNSGKSDFFEQKSR 332
Query: 323 DYQKASVMSS 332
Y K S +
Sbjct: 333 QYAKVSADNG 342
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A
2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A
1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Length = 375
Score = 319 bits (818), Expect = e-107
Identities = 73/361 (20%), Positives = 132/361 (36%), Gaps = 49/361 (13%)
Query: 19 EQEQEDQEPILMEQNQRFCMF-PIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLD 77
+ + +EP+ Q + +Y ++ +K + FW EEVD+S+D ++ L +
Sbjct: 8 TKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPE 67
Query: 78 SEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLE 137
EKH L + D I + L I IPE + E IHS Y+ ++
Sbjct: 68 HEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIR 127
Query: 138 TYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS------------------------- 172
+ D +F+ I + ++A+ +
Sbjct: 128 NIVNDPSV---VFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTV 184
Query: 173 -----SDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 227
L+ +E I F SF F +R LM G LI+RDE LH
Sbjct: 185 SLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTG 244
Query: 228 ACLLYSLLRKRLH-----------WQKVHHMVHEAVEIETQFVCEALP-CALIGMNSSLM 275
+ +LLR Q+ + + +A + E + ++IG+N ++
Sbjct: 245 TQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDIL 304
Query: 276 SQYIKFVADRLLVALGCQRKYNV-ENPFDWME--FISLQGKANFFERRVGDYQKASVMSS 332
QY++++ + + A+G + NP W+ +S + E V Y + S
Sbjct: 305 CQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSE 364
Query: 333 L 333
+
Sbjct: 365 V 365
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase,
RNR, radical enzyme, split SIGN metallocofactor; 1.36A
{Corynebacterium ammoniagenes} PDB: 1uzr_A*
Length = 296
Score = 285 bits (731), Expect = 1e-95
Identities = 53/275 (19%), Positives = 108/275 (39%), Gaps = 14/275 (5%)
Query: 41 IRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100
I ++ E++ + +FW E++ +S D+Q W ++ E+ V D I
Sbjct: 23 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTV 82
Query: 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVA 160
A L D + A Y ME++H++ YS + T + + F E +
Sbjct: 83 GAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST-PQINEAFRWSEENENLQ 141
Query: 161 QKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRD 220
+KAK + + + D ++ V +E F F +L R + LI RD
Sbjct: 142 RKAKIIMSYYN-GDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRD 200
Query: 221 EGLHCDFACLLYSLLRKRL--HWQK-----VHHMVHEAVEIETQFVCEALPCALIGMNSS 273
E +H + Y K+L Q+ ++++ E E ++ + +G
Sbjct: 201 ESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGWTED 258
Query: 274 LMSQYIKFVADRLLVALGCQRKYNVE--NPFDWME 306
+ +++++ A++ L LG + + + +
Sbjct: 259 -VKRFLRYNANKALNNLGYEGLFPTDETKVSPAIL 292
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 1e-10
Identities = 56/347 (16%), Positives = 103/347 (29%), Gaps = 90/347 (25%)
Query: 55 ASF--WTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIP 112
F + + V+ S+ Q + L F + + +D + LAA+ L +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN---CYLEGND---IHALAAKLLQENDTT 115
Query: 113 EA------RAFY-GFQIAMENIHSEMYSLLL--------------------ETYIKDSKE 145
+ + +A + S L + Y ++ ++
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 146 KHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
++ ++ V D I S L+ F+ + WL+
Sbjct: 176 LYQTYH-----VLVG-------DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 206 LMPGLTF------SNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVH-EAVEIETQF 258
P + S LI G+ A Y + K L + + + +Q
Sbjct: 224 NTPDKDYLLSIPISCPLI----GV-IQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 259 VCEALPCALIGMNSSLMSQYIKFVADRLLVALG--CQRKY------------NVEN---- 300
+ A+ A S K + +L +G C Y ++EN
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 301 PFDWMEFIS------LQGKANFFERRVGDYQKASVMSSLQNGEKNFV 341
P M IS +Q N + ++ + SL NG KN V
Sbjct: 335 P-SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI--SLVNGAKNLV 378
Score = 51.6 bits (123), Expect = 2e-07
Identities = 60/339 (17%), Positives = 104/339 (30%), Gaps = 133/339 (39%)
Query: 17 QGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLL 76
QG QEQ M M ++YK ++A A++V W R
Sbjct: 1624 QGSQEQG------M------GM---------DLYKTSKA----AQDV--------WNR-- 1648
Query: 77 DSEKHFISHVLAF-FAASDGIVLENLAARFLNDIQIPEARAFY-----GFQIAMENIHSE 130
++ HF + F+ D IV+ N P + G +I E
Sbjct: 1649 -ADNHFKD---TYGFSILD-IVINN-----------PVNLTIHFGGEKGKRIR------E 1686
Query: 131 MYSLLLETYIKDSKEKHR-LFNAI-ENI-------------------PC--VAQKAKWAL 167
YS ++ I D K K +F I E+ P + +KA +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 168 --DW--IHSSDSFAERLVG--------FACVEGIFFSGSF-CAIFWLKKRGLMPGLTFSN 214
I + +FA G A + + S + + RG+
Sbjct: 1747 LKSKGLIPADATFA----GHSLGEYAALASLADVM---SIESLVEVVFYRGM-----TMQ 1794
Query: 215 ELISRDEGLHCDFAC--LLYSLLRKRLHWQKVHHMVHEA-------VEI------ETQFV 259
+ RDE ++ + + + + ++V VEI Q+V
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 260 C----EALPCALIGMNSSLMSQYIKFVADRLLVALGCQR 294
AL + + + + Q I + L +L +
Sbjct: 1855 AAGDLRALD-TVTNVLNFIKLQKIDII--ELQKSLSLEE 1890
Score = 50.0 bits (119), Expect = 7e-07
Identities = 60/402 (14%), Positives = 108/402 (26%), Gaps = 145/402 (36%)
Query: 19 EQEQEDQEPI-LMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWER--L 75
E D EP E +F + + F ++V L+ + +E L
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVE-----PSKVGQF---DQV-LNLCLTEFENCYL 96
Query: 76 LDSEKH-FISHVL---------------AFFAA---SDGIVLENLAARFLNDIQIPEARA 116
++ H + +L + A + + + + A+
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 117 FYGF--QIAMENIHSEM------YSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALD 168
F Q ++ E+ Y +L+ IK S E L I + L+
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE--TLSELIRTTLDAEKVFTQGLN 214
Query: 169 ---WIHSSDS--------------------------------------FAERLVG-FACV 186
W+ + + L G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 187 EGI--------------FFSGSFCAI---FWLKKRGL--MPGLTFSNELIS----RDEG- 222
+G+ FF AI F++ R P + ++ +EG
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 223 ----LHCDFACLLYSLLRKRL--HWQKV--HHMVHEAVEI-----ETQFVCEALPCALIG 269
L +L ++++ + K H + VEI V P +L G
Sbjct: 335 PSPMLSIS------NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 270 MNSSL--------MSQY-IKFVADRLLVALGCQRKYNVENPF 302
+N +L + Q I F +RK N F
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPF----------SERKLKFSNRF 420
Score = 38.5 bits (89), Expect = 0.004
Identities = 36/233 (15%), Positives = 66/233 (28%), Gaps = 95/233 (40%)
Query: 37 CMFPIR---YKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAAS 93
M I +QV + K + ++V++S L++ K+ V++
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--------LVNGAKNL---VVS----- 380
Query: 94 DGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK----HRL 149
G P ++ YG + + + S L ++ I S+ K +R
Sbjct: 381 -G----------------P-PQSLYGLNLTLRKAKAP--SGLDQSRIPFSERKLKFSNR- 419
Query: 150 FNAIENIPCVAQKAKWALDWIHSS------DSFAERLVGFACVEGIFFSGSFCAIFWLKK 203
F + P HS D + LV + F+ I
Sbjct: 420 FLPV-ASPF------------HSHLLVPASDLINKDLVK----NNVSFNAKDIQI----- 457
Query: 204 RGLMP------GL---TFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHM 247
P G S + R D ++R + W+
Sbjct: 458 ----PVYDTFDGSDLRVLSGSISER----IVD------CIIRLPVKWETTTQF 496
Score = 30.4 bits (68), Expect = 1.3
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 3/19 (15%)
Query: 71 HWERLLDSEKHFISHVLAF 89
WE + +H+L F
Sbjct: 489 KWETTTQFK---ATHILDF 504
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.013
Identities = 47/336 (13%), Positives = 93/336 (27%), Gaps = 80/336 (23%)
Query: 4 LKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPI-RYKQVWEMYKKAQASFWTAEE 62
L + + E Q + +Q L NQ F + + R + ++ ++A
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQA--------- 143
Query: 63 VDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQI 122
L + L K+ + + + +A ++ F F +
Sbjct: 144 --LLE--------LRPAKNVLIDGVLGSGKT---W---VALDVCLSYKVQCKMDFKIFWL 187
Query: 123 AMENIHSEMYSL--LLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180
++N +S L L + + + NI + L + S + L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 181 V--------------GFAC-------VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISR 219
+ +C + + S + LT
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-------P 300
Query: 220 DEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIG---MNSSLMS 276
DE SLL K L + + E + ++I +
Sbjct: 301 DEVK---------SLLLKYLD-CRPQDLPREVLTT------NPRRLSIIAESIRDGLATW 344
Query: 277 QYIKFV-ADRLLVALGCQRKYNVENPFDWME-FISL 310
K V D+L + + NV P ++ + F L
Sbjct: 345 DNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRL 378
Score = 33.3 bits (75), Expect = 0.14
Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 31/104 (29%)
Query: 30 MEQNQRFCMFPIRYKQV-WEMYK-KAQASFWTAEE--VDLSQDVQ-----------HWER 74
+E +R +F + + + K + ++ W A ++ Q ++ +ER
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 75 LLDSEKHFI----SHV----------LAFFAASDGIVLENLAAR 104
L+++ F+ ++ +A A + I E A +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE--AHK 585
Score = 31.4 bits (70), Expect = 0.60
Identities = 38/291 (13%), Positives = 75/291 (25%), Gaps = 79/291 (27%)
Query: 50 YKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN---LAARFL 106
YK + F A + D + + D K +S D I++ L
Sbjct: 18 YKDILSVFEDAFVDNF--DCKD---VQDMPKSILSK-----EEIDHIIMSKDAVSGTLRL 67
Query: 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK-----------HRLFNAIEN 155
+ + Q +E + Y L+ + ++ RL+N +
Sbjct: 68 FWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 156 IPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPG-----L 210
K+ + + + L+ + + G + G +
Sbjct: 126 FA------KYNVSRLQPYLKLRQALLELRPAKNVLIDG-------------VLGSGKTWV 166
Query: 211 TFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIE------TQFVCEALP 264
+ + C ++ W + + +E Q
Sbjct: 167 ALD---VCLSYKVQCKMDF--------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 265 CALIGMNSSLMSQYIKFVADRLLVALGCQRKY--------NVENPFDWMEF 307
+ N L I+ RLL + Y NV+N W F
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNAKAWNAF 262
Score = 30.2 bits (67), Expect = 1.3
Identities = 33/260 (12%), Positives = 70/260 (26%), Gaps = 78/260 (30%)
Query: 65 LSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA-----------ARFLNDIQIPE 113
+ + W+ ++ ++ L L + F IP
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESS-------LNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 114 AR--------AFYGFQIAMENIHS-------------EMYSLLLETYIK--DSKEKHRLF 150
+ + +H + S+ LE +K + HR
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 151 NAIE--NIPCVAQKAKWALDWI----------H-SSDSFAERLVGFACVEGIFFSGSF-- 195
++ NIP ++ H + ER+ F +F F
Sbjct: 450 --VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF---RMVFLDFRFLE 504
Query: 196 -----CAIFWLKKRGLMPGLT---FSNELISRDEGLHCDFACLLYSLLR------KRLHW 241
+ W ++ L F I ++ + L+ ++L + L
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP---KYERLVNAILDFLPKIEENLIC 561
Query: 242 QKVHHMVHEAVEIETQFVCE 261
K ++ A+ E + + E
Sbjct: 562 SKYTDLLRIALMAEDEAIFE 581
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 34.7 bits (79), Expect = 0.045
Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 23/179 (12%)
Query: 6 NETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDL 65
+ET++ +Q + ++ + + + F + K + E K++ FW + V
Sbjct: 69 SETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQ-FWDTQPVPK 127
Query: 66 SQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAME 125
+V + ++ +K I +P+ + +
Sbjct: 128 LGEVVNTHGPVEPDKDNIRQ---------------------EPYTLPQGFTWDALDLGDR 166
Query: 126 NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDW-IHSSDSFAERLVGF 183
+ E+Y+LL E Y++D R + E + + W W + +LVGF
Sbjct: 167 GVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGF 225
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase,
NMT1, acyltransferase, phosphoprotein, structural
genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A*
3iwe_A* 3jtk_A*
Length = 383
Score = 31.9 bits (72), Expect = 0.28
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 125 ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDW-IHSSDSFAERLVGF 183
+ E+Y+LL E Y++D R + E + + W W + +LVGF
Sbjct: 53 RGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGF 112
>1wub_A Conserved hypothetical protein TT1927B; beta-barrel, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: OTP; 1.65A {Thermus thermophilus}
SCOP: b.61.6.1
Length = 178
Score = 30.0 bits (68), Expect = 0.81
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 164 KWALDWIHSSDSFAERLVGFACVEGIF--FSGSF 195
KW LD H+S F R +G A V G SGS
Sbjct: 2 KWNLDPSHTSIDFKVRHMGIASVRGSLKVLSGSV 35
>2fgs_A Putative periplasmic protein; lipid binding protein, structural
genomics, protein structure initiative, PSI, nysgxrc;
2.90A {Campylobacter jejuni}
Length = 179
Score = 29.6 bits (67), Expect = 0.90
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 164 KWALDWIHSSDSFAERLVGFACVEGIF--FSGSF 195
++ LD H+ F + + + V+G F +S
Sbjct: 2 EYTLDKAHTDVGFKIKHLQISNVKGNFKDYSAVI 35
>3hpe_A Conserved hypothetical secreted protein; HP1286, erucamide,
fatty-acid binding; HET: ERU; 2.10A {Helicobacter
pylori}
Length = 164
Score = 29.6 bits (67), Expect = 0.94
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 164 KWALDWIHSSDSFAERLVGFACVEGIF--FSGSF 195
+ +D +SS F + F G+F F G
Sbjct: 2 PYTIDKANSSVWFEVKHFKFNETRGVFDSFDGKI 35
>4a95_A Glycylpeptide N-tetradecanoyltransferase; malaria; HET: 9MT NHM;
1.55A {Plasmodium vivax}
Length = 384
Score = 28.8 bits (64), Expect = 2.5
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 125 ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDW-IHSSDSFAERLVGF 183
E SE+Y+LL + Y++D R + E + + W I + +L+GF
Sbjct: 55 EKDRSEIYTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGF 114
>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A
{Leishmania donovani} PDB: 3h5z_A* 4a2z_A* 4a30_A*
4a31_A* 4a32_A* 4a33_A* 2wsa_A*
Length = 421
Score = 28.9 bits (64), Expect = 2.9
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 125 ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDW---IHSSDSFAERLV 181
+ +Y LL + Y++D R + E + + DW + +L+
Sbjct: 66 ADDIHAIYELLRDNYVEDDDSMFRFNYSEEFLQWALCPPSYIPDWHVAVRRKADK--KLL 123
Query: 182 GF 183
F
Sbjct: 124 AF 125
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 27.2 bits (60), Expect = 3.4
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 1 MGSLKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTA 60
M LK + EN +++ EQ E +++ E + + + K + +K S A
Sbjct: 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70
Query: 61 EE 62
+E
Sbjct: 71 QE 72
>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A
{Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB:
1iyl_A* 1nmt_A
Length = 392
Score = 28.5 bits (63), Expect = 3.6
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 125 ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDW---IHSSDSFAERLV 181
E+Y LL + Y++D R + E + W DW + + +LV
Sbjct: 34 NLQLDELYKLLYDNYVEDIDATFRFKYSHEFFQWALKPPGWRKDWHVGVRVKST--GKLV 91
Query: 182 GF 183
F
Sbjct: 92 AF 93
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol
phosphate kinase, transferase; 2.90A {Arabidopsis
thaliana}
Length = 275
Score = 27.8 bits (61), Expect = 4.8
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 50 YKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDG-----IVLENLAAR 104
+K Q EV + + + + A +VLENL A
Sbjct: 20 FKPLQGDSRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQAVEGSDGAAMMVLENLLAE 79
Query: 105 FLN----DIQI 111
+ D+++
Sbjct: 80 YTKPSVMDVKM 90
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 28.0 bits (62), Expect = 5.0
Identities = 6/25 (24%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 283 ADRLLVALG-CQRKYNVENPFDWME 306
+ ++++ +G C N++NPF + +
Sbjct: 34 SKKVIINIGSCFNTPNIKNPFSFEQ 58
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 27.3 bits (60), Expect = 7.5
Identities = 6/25 (24%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 283 ADRLLVALG-CQRKYNVENPFDWME 306
A+++++ LG + + NP+ E
Sbjct: 34 AEQVIIILGSHRVAADTRNPWRSPE 58
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme,
dehydrogenase, hydrolase, predicted, structural
genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP:
b.61.6.1
Length = 191
Score = 27.0 bits (60), Expect = 8.1
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 160 AQKAKWALD--WIHSSDSFAERLVGFACVEGIF--FSGSF 195
A A + +D H+ +F + +G++ + G F F G+F
Sbjct: 20 AVAADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTF 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.418
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,316,297
Number of extensions: 307958
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 51
Length of query: 348
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 254
Effective length of database: 4,077,219
Effective search space: 1035613626
Effective search space used: 1035613626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.6 bits)