Query 018934
Match_columns 348
No_of_seqs 133 out of 1779
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 08:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 1.6E-10 5.5E-15 91.1 4.8 72 258-329 34-106 (137)
2 3b5d_A Multidrug transporter E 98.7 3.5E-08 1.2E-12 75.0 6.4 71 258-328 34-105 (110)
3 3b5d_A Multidrug transporter E 98.1 5E-06 1.7E-10 63.0 6.7 67 83-155 34-102 (110)
4 2i68_A Protein EMRE; transmemb 98.1 2.3E-06 7.7E-11 67.3 4.7 67 83-155 34-102 (137)
5 3l1l_A Arginine/agmatine antip 71.6 52 0.0018 29.9 12.6 45 286-330 386-430 (445)
6 1pw4_A Glycerol-3-phosphate tr 34.1 2.5E+02 0.0084 24.8 18.5 15 39-53 118-132 (451)
7 2l2t_A Receptor tyrosine-prote 28.0 32 0.0011 20.6 1.8 8 321-328 30-37 (44)
8 3rko_J NADH-quinone oxidoreduc 10.9 6.1E+02 0.021 20.1 11.6 24 295-318 127-150 (184)
9 3l1l_A Arginine/agmatine antip 10.2 6.1E+02 0.021 22.5 7.1 120 64-214 316-435 (445)
10 2knc_A Integrin alpha-IIB; tra 10.1 2.3E+02 0.008 17.6 2.7 34 309-342 17-54 (54)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.03 E-value=1.6e-10 Score=91.10 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceEEeec-hhhHHHHHHHHHHHHhcCcchhhhhhhHHHHHHhhhhheeccc
Q 018934 258 YSAFFGLSFITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 329 (348)
Q Consensus 258 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~-~~l~pv~a~~~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~ 329 (348)
.++++++++++.+|++++++.+++++.++ ..+.|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 46677899999999999999999999998 8999999999999999999999999999999999998876443
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.66 E-value=3.5e-08 Score=75.01 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceEEeec-hhhHHHHHHHHHHHHhcCcchhhhhhhHHHHHHhhhhheecc
Q 018934 258 YSAFFGLSFITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 328 (348)
Q Consensus 258 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~-~~l~pv~a~~~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~ 328 (348)
..++++.++++.++.+++|+.+.+.+.++ ..+.|+++.+++++++||++++.+++|..+|++|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45666888999999999999999999888 899999999999999999999999999999999999886543
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.13 E-value=5e-06 Score=62.97 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=60.2
Q ss_pred HHHHHH-HHHHHHHHHhhcccChhhHHhh-hhhhHHHHHHHHHHHhhhcccccccccchhhhHHHHHhhhceeEE
Q 018934 83 FLSLVG-SFFRILGYTGIAYSSPTLASMI-GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (348)
Q Consensus 83 ~~g~~~-~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~l~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 155 (348)
+.+++. +.+++++..++++.|.+.+..+ ..+.|+++.+++++++||++ +..++.|+.+.+.|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~------s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL------DLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHHh
Confidence 445555 8999999999999999999888 79999999999999999999 6669999999999998876
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.12 E-value=2.3e-06 Score=67.30 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=51.0
Q ss_pred HHHHHH-HHHHHHHHHhhcccChhhHHhh-hhhhHHHHHHHHHHHhhhcccccccccchhhhHHHHHhhhceeEE
Q 018934 83 FLSLVG-SFFRILGYTGIAYSSPTLASMI-GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (348)
Q Consensus 83 ~~g~~~-~~~~~~~~~al~~~~~~~a~~l-~~~~P~~~~i~a~l~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 155 (348)
+.+++. +++++++..++++.+++.+..+ .++.|+++.++++++++|++ +..+++|+++.+.|++++.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l------s~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL------DLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHHh
Confidence 455555 9999999999999999999888 89999999999999999999 5559999999999998886
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=71.57 E-value=52 Score=29.91 Aligned_cols=45 Identities=9% Similarity=-0.220 Sum_probs=25.2
Q ss_pred chhhHHHHHHHHHHHHhcCcchhhhhhhHHHHHHhhhhheecccc
Q 018934 286 FKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 330 (348)
Q Consensus 286 ~~~l~pv~a~~~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~ 330 (348)
....-++++.++..+..-.........|..+++.|+.++...+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555566555554443222334556788888887776654433
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=34.14 E-value=2.5e+02 Score=24.85 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHHH
Q 018934 39 SYFVFVFYSYAATTL 53 (348)
Q Consensus 39 ~p~~~~~~r~~~~~l 53 (348)
+...+...|.+.+..
T Consensus 118 ~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWF 132 (451)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 334555667766543
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.96 E-value=32 Score=20.64 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=3.1
Q ss_pred hhhheecc
Q 018934 321 FYTVLWGK 328 (348)
Q Consensus 321 ~~l~~~~~ 328 (348)
.+++.+++
T Consensus 30 ~~~~~RRR 37 (44)
T 2l2t_A 30 FAVYVRRK 37 (44)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhh
Confidence 33343333
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=10.91 E-value=6.1e+02 Score=20.13 Aligned_cols=24 Identities=0% Similarity=-0.017 Sum_probs=19.4
Q ss_pred HHHHHHHhcCcchhhhhhhHHHHH
Q 018934 295 AITSFIFLSEALHLGSVIGGVITC 318 (348)
Q Consensus 295 ~~~~~~~~~e~~~~~~~iG~~li~ 318 (348)
-.+|...+++-.-+-+..+..+.+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899988888888877654
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=10.19 E-value=6.1e+02 Score=22.47 Aligned_cols=120 Identities=12% Similarity=0.008 Sum_probs=0.0
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccChhhHHhhhhhhHHHHHHHHHHHhhhcccccccccchhhhH
Q 018934 64 RSNTASLPLFKFPVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIG 143 (348)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~P~~~~i~a~l~~~e~~~~~~~~~~~~~~g 143 (348)
|. .+ ++.+.+..........+.......-...-.+......+.+.....-....++.+.+|.|-+ |.|.....+++
T Consensus 316 ~~--~~-~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r~~~~~~~~ 391 (445)
T 3l1l_A 316 RV--NK-AGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GKARPAYLAVT 391 (445)
T ss_dssp CC--CT-TCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GGGCTTTHHHH
T ss_pred hc--CC-CCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccccchhHHHH
Q ss_pred HHHHhhhceeEEEeeCccccCCCCCccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 018934 144 TLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQQTQTMKLYP 214 (348)
Q Consensus 144 ~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~ 214 (348)
.+..+..+.++. ..+......|..+.+.+...|..+ ++..++.+
T Consensus 392 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~g~~~y~~~-----~~~~~~~~ 435 (445)
T 3l1l_A 392 TIAFLYCIWAVV----------------------GSGAKEVMWSFVTLMVITAMYALN-----YNRLHKNP 435 (445)
T ss_dssp HHHHHHHHHHHH----------------------HSCHHHHHHHHHHHHHHHHHHHHH-----HSTTCCCS
T ss_pred HHHHHHHHHHHH----------------------HcCHHHHHHHHHHHHHHHHHHHHH-----hhhcccCc
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.14 E-value=2.3e+02 Score=17.64 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhhhheec----cccccccCCCCCCCC
Q 018934 309 GSVIGGVITCVGFYTVLWG----KANDEAGKNKDSCKI 342 (348)
Q Consensus 309 ~~~iG~~li~~g~~l~~~~----~~~~~~~~~~~~~~~ 342 (348)
...+|+.+++.-+....|. +++++..+++++++.
T Consensus 17 ~svl~GLllL~li~~~LwK~GFFkR~~~~~~e~~~~~~ 54 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWKVGFFKRNRPPLEEDDEEGE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccCCCCCcchhhhccC
Done!