Query 018934
Match_columns 348
No_of_seqs 133 out of 1779
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 08:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018934.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018934hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 49.9 64 0.0047 26.4 19.4 25 258-282 352-376 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 34.5 76 0.0056 24.1 8.1 47 274-320 77-123 (222)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 25.9 35 0.0025 16.2 3.1 16 186-201 3-18 (27)
4 d1pv7a_ f.38.1.2 (A:) Lactose 10.3 3.4E+02 0.025 20.7 7.8 36 14-49 14-51 (417)
5 d2axte1 f.23.38.1 (E:3-84) Cyt 8.3 1.7E+02 0.013 18.0 3.3 43 305-347 24-66 (82)
6 d1gl4a1 d.22.1.2 (A:399-631) D 5.7 1E+02 0.0074 23.8 1.4 37 96-133 42-78 (233)
7 d1kqfb2 f.23.22.1 (B:246-290) 5.3 2.6E+02 0.019 15.2 2.6 25 301-325 7-31 (45)
8 d1q90r_ f.23.12.1 (R:) ISP sub 2.9 4.3E+02 0.031 13.8 3.6 18 71-88 5-22 (39)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 2.7 3.8E+02 0.027 12.6 2.5 8 299-306 20-27 (30)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 2.4 7.3E+02 0.053 17.5 4.0 25 296-320 81-105 (199)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=49.88 E-value=64 Score=26.42 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceE
Q 018934 258 YSAFFGLSFITVVHTFGLRMKGPVY 282 (348)
Q Consensus 258 ~~~~~~~~~~~~l~~~a~~~~~~~~ 282 (348)
..|+.........+....+..+...
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3343333333444445555555443
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=34.51 E-value=76 Score=24.08 Aligned_cols=47 Identities=11% Similarity=-0.091 Sum_probs=28.0
Q ss_pred hhhcCCceEEeechhhHHHHHHHHHHHHhcCcchhhhhhhHHHHHHh
Q 018934 274 GLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVG 320 (348)
Q Consensus 274 a~~~~~~~~~~~~~~l~pv~a~~~~~~~~~e~~~~~~~iG~~li~~g 320 (348)
..+........+....--+.+...+..+.+.+++....+|.++.++-
T Consensus 77 ~frS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 77 LYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp TTCSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 33443333333333333345566677778999999988887775544
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.91 E-value=35 Score=16.20 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 018934 186 IGGLLLLISNLLISVW 201 (348)
Q Consensus 186 ~G~~~~l~a~~~~a~~ 201 (348)
.|.++.-+++++||.|
T Consensus 3 lgli~~tl~glf~aay 18 (27)
T d2e74g1 3 LGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHH
Confidence 5888888999999988
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.25 E-value=3.4e+02 Score=20.66 Aligned_cols=36 Identities=8% Similarity=-0.238 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-h-CCCCHHHHHHHHHH
Q 018934 14 TAMVAAECTIVGENIIFKLAT-S-KGMSYFVFVFYSYA 49 (348)
Q Consensus 14 ~~~~~~~~~~~~~~~~~k~~~-~-~~~~p~~~~~~r~~ 49 (348)
+...+..+.++....+....+ + .+.++.+....-..
T Consensus 14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~ 51 (417)
T d1pv7a_ 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAA 51 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 334444555555544443322 2 27888887665443
No 5
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.33 E-value=1.7e+02 Score=18.02 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=25.6
Q ss_pred cchhhhhhhHHHHHHhhhhheeccccccccCCCCCCCCCCCCC
Q 018934 305 ALHLGSVIGGVITCVGFYTVLWGKANDEAGKNKDSCKIPLLQS 347 (348)
Q Consensus 305 ~~~~~~~iG~~li~~g~~l~~~~~~~~~~~~~~~~~~~p~l~~ 347 (348)
.+..+.+.|-..+-.|+.--..+..+..+.-.++.++.|+..+
T Consensus 24 TIPslFiaGwlFVstGLAYdvFGtPrPneYft~~rq~~pli~~ 66 (82)
T d2axte1 24 TIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTD 66 (82)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTCCCTTCSSCSSCCSCCCCCC
T ss_pred cccHHHHhhhhheecccchhhcCCCCcccccccccccCccccc
Confidence 4445566777777777766665555444433355566677654
No 6
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.69 E-value=1e+02 Score=23.78 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHhhcccChhhHHhhhhhhHHHHHHHHHHHhhhccccc
Q 018934 96 YTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALS 133 (348)
Q Consensus 96 ~~al~~~~~~~a~~l~~~~P~~~~i~a~l~~~e~~~~~ 133 (348)
|.+++.+|+..+..+..+.|+.. .++|+|=||.-...
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFK 78 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCC
T ss_pred EEEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCcc
Confidence 45788899999999999999988 67899999877544
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.26 E-value=2.6e+02 Score=15.24 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=17.5
Q ss_pred HhcCcchhhhhhhHHHHHHhhhhhe
Q 018934 301 FLSEALHLGSVIGGVITCVGFYTVL 325 (348)
Q Consensus 301 ~~~e~~~~~~~iG~~li~~g~~l~~ 325 (348)
+......+...+|+...+++.++-.
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3456677778888888777766654
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.89 E-value=4.3e+02 Score=13.77 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=14.0
Q ss_pred CCCchhHHHHHHHHHHHH
Q 018934 71 PLFKFPVISRICFLSLVG 88 (348)
Q Consensus 71 ~~~~~~~~~~~~~~g~~~ 88 (348)
+...+|++..+++.|...
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 556678888888888777
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.69 E-value=3.8e+02 Score=12.61 Aligned_cols=8 Identities=38% Similarity=0.505 Sum_probs=3.9
Q ss_pred HHHhcCcc
Q 018934 299 FIFLSEAL 306 (348)
Q Consensus 299 ~~~~~e~~ 306 (348)
.+++.|+|
T Consensus 20 aiffrepp 27 (30)
T d2axtt1 20 AIFFREPP 27 (30)
T ss_dssp HHHTSCCC
T ss_pred HHHhcCCC
Confidence 34455554
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.44 E-value=7.3e+02 Score=17.48 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=14.8
Q ss_pred HHHHHHhcCcchhhhhhhHHHHHHh
Q 018934 296 ITSFIFLSEALHLGSVIGGVITCVG 320 (348)
Q Consensus 296 ~~~~~~~~e~~~~~~~iG~~li~~g 320 (348)
.....++|..++.....+..+.++.
T Consensus 81 ~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 81 FAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCchHHHHHHHHHHHHHH
Confidence 3334456777777766666655544
Done!