Query 018935
Match_columns 348
No_of_seqs 129 out of 166
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:17:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01959 DHQS: 3-dehydroquinat 100.0 7E-111 1E-115 814.8 31.6 286 51-338 1-300 (354)
2 PRK02290 3-dehydroquinate synt 100.0 1E-110 2E-115 810.9 32.2 282 50-338 1-290 (344)
3 COG1465 Predicted alternative 100.0 6E-107 1E-111 775.2 29.8 287 49-337 1-321 (376)
4 PF01079 Hint: Hint module; I 94.9 0.065 1.4E-06 50.3 6.4 63 279-341 14-80 (217)
5 cd00331 IGPS Indole-3-glycerol 92.8 1.2 2.6E-05 40.1 10.2 112 58-190 82-202 (217)
6 smart00306 HintN Hint (Hedgeho 92.6 0.39 8.5E-06 37.0 5.9 59 282-340 7-68 (100)
7 PRK05826 pyruvate kinase; Prov 91.6 0.44 9.5E-06 49.4 6.7 135 58-205 174-335 (465)
8 cd00452 KDPG_aldolase KDPG and 91.5 1.2 2.7E-05 39.8 8.6 111 59-193 18-128 (190)
9 TIGR03239 GarL 2-dehydro-3-deo 90.4 1.1 2.5E-05 42.4 7.7 90 109-203 12-106 (249)
10 PTZ00300 pyruvate kinase; Prov 90.0 1 2.3E-05 46.7 7.6 136 57-205 147-308 (454)
11 PRK10128 2-keto-3-deoxy-L-rham 89.8 1.3 2.8E-05 42.8 7.6 92 109-203 18-112 (267)
12 TIGR02311 HpaI 2,4-dihydroxyhe 89.5 1.4 3.1E-05 41.6 7.6 91 110-204 13-107 (249)
13 PRK10558 alpha-dehydro-beta-de 89.3 1.6 3.4E-05 41.7 7.7 90 109-203 19-113 (256)
14 TIGR00262 trpA tryptophan synt 89.3 2.4 5.1E-05 40.4 8.9 116 60-191 105-229 (256)
15 PRK10128 2-keto-3-deoxy-L-rham 89.1 1.3 2.8E-05 42.8 7.1 131 59-192 79-240 (267)
16 PRK10558 alpha-dehydro-beta-de 89.0 1.4 3E-05 42.1 7.1 100 59-194 80-181 (256)
17 PRK00278 trpC indole-3-glycero 88.9 4.9 0.00011 38.2 10.7 116 59-195 122-251 (260)
18 cd04729 NanE N-acetylmannosami 88.8 1.6 3.5E-05 39.6 7.1 109 60-191 82-208 (219)
19 PF00224 PK: Pyruvate kinase, 88.2 0.51 1.1E-05 46.7 3.8 135 57-204 176-336 (348)
20 TIGR03239 GarL 2-dehydro-3-deo 87.4 1.6 3.5E-05 41.5 6.5 136 53-191 65-232 (249)
21 CHL00200 trpA tryptophan synth 87.2 2.1 4.5E-05 41.2 7.1 117 59-191 108-233 (263)
22 PF01729 QRPTase_C: Quinolinat 86.9 2 4.3E-05 38.9 6.4 42 160-204 81-122 (169)
23 PTZ00066 pyruvate kinase; Prov 86.8 2.4 5.1E-05 44.9 7.9 135 58-205 210-371 (513)
24 PLN02591 tryptophan synthase 86.6 2.7 5.8E-05 40.3 7.5 117 59-191 95-220 (250)
25 PF03328 HpcH_HpaI: HpcH/HpaI 86.3 3.8 8.3E-05 37.2 8.0 92 111-206 2-109 (221)
26 PRK01130 N-acetylmannosamine-6 85.9 4.1 8.9E-05 37.0 8.0 110 59-191 77-204 (221)
27 PRK05848 nicotinate-nucleotide 84.8 1.9 4.1E-05 41.9 5.6 52 149-203 169-223 (273)
28 PF02662 FlpD: Methyl-viologen 84.3 1.3 2.9E-05 38.0 3.8 49 169-217 39-100 (124)
29 TIGR01370 cysRS possible cyste 83.8 9.8 0.00021 37.9 10.1 125 49-193 43-171 (315)
30 cd06220 DHOD_e_trans_like2 FAD 83.6 5.9 0.00013 36.0 7.9 48 278-332 49-96 (233)
31 cd04732 HisA HisA. Phosphorib 83.5 13 0.00029 33.4 10.2 131 52-191 75-221 (234)
32 PRK08345 cytochrome-c3 hydroge 82.9 6.8 0.00015 37.2 8.4 97 216-331 6-115 (289)
33 PRK05826 pyruvate kinase; Prov 82.3 11 0.00023 39.5 10.1 37 169-205 173-210 (465)
34 PRK01130 N-acetylmannosamine-6 81.9 19 0.00041 32.7 10.6 115 60-189 26-146 (221)
35 TIGR02311 HpaI 2,4-dihydroxyhe 81.9 9.3 0.0002 36.2 8.8 140 52-194 15-175 (249)
36 PRK05458 guanosine 5'-monophos 81.6 7 0.00015 39.1 8.2 116 56-189 47-168 (326)
37 PLN02762 pyruvate kinase compl 81.6 5.3 0.00011 42.3 7.7 135 58-205 204-366 (509)
38 PF00970 FAD_binding_6: Oxidor 81.0 3.6 7.8E-05 32.2 4.9 88 217-312 1-97 (99)
39 cd04730 NPD_like 2-Nitropropan 80.6 9.9 0.00021 34.3 8.2 110 58-191 68-187 (236)
40 PLN02623 pyruvate kinase 80.4 5.1 0.00011 43.1 7.2 135 58-205 279-439 (581)
41 PRK06106 nicotinate-nucleotide 80.1 3.4 7.3E-05 40.5 5.4 42 160-204 195-236 (281)
42 PRK06559 nicotinate-nucleotide 79.8 3.8 8.3E-05 40.4 5.7 42 160-204 198-239 (290)
43 TIGR01064 pyruv_kin pyruvate k 79.5 4.4 9.6E-05 42.0 6.3 135 58-205 172-333 (473)
44 PRK13922 rod shape-determining 79.5 25 0.00055 33.2 10.8 118 195-321 101-240 (276)
45 cd00081 Hint Hedgehog/Intein d 79.5 8.1 0.00018 31.5 6.7 59 283-341 7-69 (136)
46 PF03060 NMO: Nitronate monoox 79.4 2 4.4E-05 41.9 3.6 43 146-191 123-165 (330)
47 TIGR03151 enACPred_II putative 79.0 5.5 0.00012 38.9 6.4 113 57-190 22-137 (307)
48 PF10844 DUF2577: Protein of u 78.9 6.3 0.00014 32.7 5.9 90 207-320 11-100 (100)
49 PRK05713 hypothetical protein; 78.5 19 0.0004 34.5 9.8 43 286-331 156-199 (312)
50 PF00072 Response_reg: Respons 78.1 8.1 0.00018 29.5 6.0 80 116-198 28-109 (112)
51 TIGR01306 GMP_reduct_2 guanosi 77.8 11 0.00023 37.8 8.1 114 57-189 45-165 (321)
52 PRK08385 nicotinate-nucleotide 77.7 4.5 9.7E-05 39.5 5.4 55 147-204 168-224 (278)
53 PRK07896 nicotinate-nucleotide 77.2 5.2 0.00011 39.4 5.7 54 148-204 186-241 (289)
54 PRK08221 anaerobic sulfite red 76.9 15 0.00033 34.4 8.5 57 271-331 49-108 (263)
55 PLN02461 Probable pyruvate kin 76.5 7.2 0.00016 41.3 6.9 135 58-205 194-355 (511)
56 PRK06739 pyruvate kinase; Vali 76.3 8.4 0.00018 39.0 7.0 134 58-204 166-326 (352)
57 PRK06543 nicotinate-nucleotide 76.2 5 0.00011 39.4 5.3 42 160-204 194-235 (281)
58 COG1370 Prefoldin, molecular c 76.1 2.2 4.8E-05 39.0 2.6 85 227-328 48-140 (155)
59 cd00331 IGPS Indole-3-glycerol 75.7 8.9 0.00019 34.6 6.4 112 60-192 34-151 (217)
60 PRK06096 molybdenum transport 75.6 5.5 0.00012 39.1 5.4 43 159-204 189-231 (284)
61 PF13653 GDPD_2: Glycerophosph 75.5 4.8 0.0001 27.4 3.5 25 53-77 2-27 (30)
62 TIGR00007 phosphoribosylformim 75.4 36 0.00078 30.8 10.3 130 53-191 75-220 (230)
63 PRK06978 nicotinate-nucleotide 75.1 6.1 0.00013 39.2 5.6 41 160-203 206-246 (294)
64 cd00288 Pyruvate_Kinase Pyruva 74.8 7.5 0.00016 40.7 6.4 135 58-205 175-335 (480)
65 PRK00278 trpC indole-3-glycero 74.3 21 0.00044 34.1 8.7 119 53-192 64-190 (260)
66 PRK11840 bifunctional sulfur c 72.6 17 0.00036 36.8 8.0 102 58-198 182-292 (326)
67 PRK00043 thiE thiamine-phospha 72.2 65 0.0014 28.4 10.9 113 61-194 72-198 (212)
68 PRK00054 dihydroorotate dehydr 72.2 4.5 9.8E-05 37.2 3.7 59 269-332 49-110 (250)
69 PRK07428 nicotinate-nucleotide 71.7 8.7 0.00019 37.7 5.7 42 159-203 196-237 (288)
70 cd06217 FNR_iron_sulfur_bindin 71.5 28 0.0006 31.0 8.5 57 270-331 50-114 (235)
71 TIGR01334 modD putative molybd 71.3 8.2 0.00018 37.8 5.4 54 148-204 175-230 (277)
72 TIGR03224 benzo_boxA benzoyl-C 71.1 22 0.00048 36.0 8.6 166 140-330 73-273 (411)
73 cd05829 Sortase_E Sortase E (S 70.6 5.8 0.00013 34.5 3.9 34 288-321 64-97 (144)
74 PRK10926 ferredoxin-NADP reduc 70.1 44 0.00096 30.9 9.7 44 285-332 69-114 (248)
75 PRK13289 bifunctional nitric o 69.6 19 0.00042 35.2 7.6 104 213-331 152-268 (399)
76 PF13403 Hint_2: Hint domain 69.4 12 0.00026 32.9 5.6 51 282-334 7-65 (147)
77 PLN02765 pyruvate kinase 69.3 4.5 9.8E-05 43.0 3.4 135 58-205 207-368 (526)
78 PRK13125 trpA tryptophan synth 69.3 12 0.00025 35.1 5.8 115 58-191 89-216 (244)
79 TIGR01163 rpe ribulose-phospha 68.2 15 0.00033 32.3 6.0 22 58-79 67-88 (210)
80 cd06196 FNR_like_1 Ferredoxin 68.0 8.1 0.00017 34.2 4.3 53 270-331 47-106 (218)
81 PF02581 TMP-TENI: Thiamine mo 67.9 28 0.0006 30.8 7.6 108 59-191 14-124 (180)
82 TIGR02911 sulfite_red_B sulfit 66.9 8.6 0.00019 36.0 4.4 58 270-331 46-106 (261)
83 cd00564 TMP_TenI Thiamine mono 66.9 26 0.00057 29.8 7.1 108 60-189 15-122 (196)
84 PTZ00314 inosine-5'-monophosph 66.7 17 0.00037 38.0 6.9 119 58-191 241-375 (495)
85 PRK09140 2-dehydro-3-deoxy-6-p 66.1 57 0.0012 30.2 9.6 122 59-203 24-148 (206)
86 TIGR03151 enACPred_II putative 66.0 26 0.00056 34.3 7.6 109 59-191 76-192 (307)
87 PF11247 DUF2675: Protein of u 65.9 3.8 8.3E-05 35.0 1.7 55 168-223 43-97 (98)
88 PRK09016 quinolinate phosphori 65.9 13 0.00029 36.9 5.7 41 160-203 209-249 (296)
89 PRK06222 ferredoxin-NADP(+) re 65.8 6 0.00013 37.4 3.2 56 270-331 44-105 (281)
90 KOG0538 Glycolate oxidase [Ene 65.7 3.5 7.5E-05 41.9 1.6 122 49-191 119-253 (363)
91 cd00405 PRAI Phosphoribosylant 65.5 86 0.0019 28.1 10.4 114 59-193 8-131 (203)
92 cd00381 IMPDH IMPDH: The catal 64.6 18 0.00038 35.7 6.3 115 56-191 92-228 (325)
93 COG2197 CitB Response regulato 64.5 52 0.0011 30.1 8.9 70 130-199 44-113 (211)
94 cd06192 DHOD_e_trans_like FAD/ 64.4 6.9 0.00015 35.6 3.2 58 269-331 42-104 (243)
95 TIGR01949 AroFGH_arch predicte 64.0 35 0.00077 32.0 7.9 131 62-204 95-248 (258)
96 PLN02716 nicotinate-nucleotide 63.8 16 0.00034 36.6 5.7 41 160-203 204-259 (308)
97 PLN02334 ribulose-phosphate 3- 63.3 33 0.00071 31.6 7.4 125 60-203 78-222 (229)
98 PF00290 Trp_syntA: Tryptophan 63.0 16 0.00035 35.4 5.6 116 59-191 104-228 (259)
99 TIGR03128 RuMP_HxlA 3-hexulose 62.8 1.1E+02 0.0024 27.1 10.7 18 62-79 68-85 (206)
100 cd00322 FNR_like Ferredoxin re 62.2 10 0.00022 33.0 3.8 49 278-331 54-104 (223)
101 PF03328 HpcH_HpaI: HpcH/HpaI 62.1 51 0.0011 30.0 8.4 131 54-193 5-154 (221)
102 cd06211 phenol_2-monooxygenase 61.7 96 0.0021 28.0 10.0 97 216-331 7-116 (238)
103 cd04724 Tryptophan_synthase_al 61.4 40 0.00087 31.6 7.8 113 60-191 94-217 (242)
104 cd08570 GDPD_YPL206cp_fungi Gl 61.3 11 0.00024 34.4 4.0 30 48-77 202-232 (234)
105 PRK10840 transcriptional regul 61.0 68 0.0015 28.1 8.7 67 132-199 49-119 (216)
106 PRK00748 1-(5-phosphoribosyl)- 61.0 35 0.00077 30.8 7.1 22 58-79 84-105 (233)
107 PF02254 TrkA_N: TrkA-N domain 60.6 64 0.0014 25.6 7.8 101 60-188 11-115 (116)
108 PRK13802 bifunctional indole-3 60.4 77 0.0017 35.1 10.6 121 59-200 122-257 (695)
109 TIGR01302 IMP_dehydrog inosine 60.3 35 0.00075 35.0 7.7 119 58-191 224-358 (450)
110 cd04722 TIM_phosphate_binding 60.0 53 0.0012 27.3 7.5 17 64-80 78-94 (200)
111 PRK09206 pyruvate kinase; Prov 60.0 28 0.00062 36.6 7.1 135 58-205 173-334 (470)
112 cd06201 SiR_like2 Cytochrome p 60.0 80 0.0017 30.1 9.6 108 212-331 42-162 (289)
113 PRK11872 antC anthranilate dio 59.5 11 0.00025 36.5 4.0 48 278-331 166-216 (340)
114 cd04728 ThiG Thiazole synthase 59.2 31 0.00068 33.7 6.8 29 165-196 183-216 (248)
115 PRK00208 thiG thiazole synthas 59.1 33 0.00072 33.6 6.9 30 165-197 183-217 (250)
116 PRK04302 triosephosphate isome 58.3 81 0.0017 29.0 9.0 110 63-190 78-203 (223)
117 PTZ00319 NADH-cytochrome B5 re 58.1 96 0.0021 29.9 9.9 93 212-312 30-144 (300)
118 cd04743 NPD_PKS 2-Nitropropane 58.0 30 0.00065 34.7 6.6 114 132-263 82-212 (320)
119 PRK09140 2-dehydro-3-deoxy-6-p 58.0 18 0.00039 33.4 4.8 84 113-199 14-100 (206)
120 PRK06354 pyruvate kinase; Prov 57.8 31 0.00068 37.2 7.1 135 58-205 179-340 (590)
121 TIGR00432 arcsn_tRNA_tgt tRNA- 57.8 8.3 0.00018 41.1 2.8 31 295-327 495-525 (540)
122 cd06213 oxygenase_e_transfer_s 57.8 1.3E+02 0.0027 27.0 10.0 38 288-331 69-107 (227)
123 PRK13957 indole-3-glycerol-pho 57.7 14 0.0003 35.7 4.1 164 59-251 63-232 (247)
124 cd04723 HisA_HisF Phosphoribos 57.4 1.2E+02 0.0025 28.3 10.0 125 52-190 80-219 (233)
125 PRK10669 putative cation:proto 57.4 51 0.0011 34.3 8.4 104 60-191 430-537 (558)
126 PRK15452 putative protease; Pr 57.3 1.1E+02 0.0024 31.8 10.8 136 52-201 5-154 (443)
127 PRK08649 inosine 5-monophospha 56.7 24 0.00052 35.7 5.8 50 132-189 154-215 (368)
128 cd06207 CyPoR_like NADPH cytoc 56.4 11 0.00024 37.3 3.3 62 265-331 159-237 (382)
129 PRK13958 N-(5'-phosphoribosyl) 56.2 1.6E+02 0.0034 27.3 10.6 114 58-191 9-131 (207)
130 PF01472 PUA: PUA domain; Int 55.8 19 0.0004 27.9 3.8 38 284-323 18-55 (74)
131 cd06212 monooxygenase_like The 55.7 1E+02 0.0022 27.6 9.1 96 217-331 2-110 (232)
132 PRK05742 nicotinate-nucleotide 55.4 28 0.0006 34.1 5.8 42 159-203 189-230 (277)
133 TIGR03784 marine_sortase sorta 55.4 16 0.00034 33.3 3.9 32 290-321 102-133 (174)
134 PF05203 Hom_end_hint: Hom_end 55.3 13 0.00028 35.1 3.4 31 283-315 7-37 (215)
135 PRK02083 imidazole glycerol ph 55.0 94 0.002 28.9 9.0 111 58-190 31-174 (253)
136 cd06198 FNR_like_3 NAD(P) bind 54.6 15 0.00032 32.6 3.6 57 269-331 40-102 (216)
137 PLN02623 pyruvate kinase 54.6 21 0.00045 38.6 5.2 61 132-194 291-353 (581)
138 cd04726 KGPDC_HPS 3-Keto-L-gul 54.6 1E+02 0.0022 27.0 8.8 114 60-190 67-187 (202)
139 cd06189 flavin_oxioreductase N 54.4 93 0.002 27.8 8.6 57 270-331 41-105 (224)
140 TIGR00078 nadC nicotinate-nucl 54.4 36 0.00079 32.8 6.4 42 159-203 178-219 (265)
141 cd04726 KGPDC_HPS 3-Keto-L-gul 54.0 68 0.0015 28.2 7.5 77 109-190 54-134 (202)
142 cd04729 NanE N-acetylmannosami 53.8 1.7E+02 0.0038 26.5 10.6 116 60-189 30-150 (219)
143 cd08562 GDPD_EcUgpQ_like Glyce 53.7 18 0.00038 32.4 3.9 30 48-77 197-227 (229)
144 COG4697 Uncharacterized protei 53.5 20 0.00044 35.9 4.6 71 219-289 177-279 (319)
145 cd06221 sulfite_reductase_like 53.5 21 0.00046 33.1 4.5 50 278-331 56-105 (253)
146 PRK13111 trpA tryptophan synth 53.4 60 0.0013 31.2 7.6 116 59-191 106-230 (258)
147 cd08575 GDPD_GDE4_like Glycero 53.3 16 0.00036 34.3 3.8 31 49-79 230-261 (264)
148 PRK08114 cystathionine beta-ly 53.3 9.4 0.0002 38.7 2.3 123 60-187 67-205 (395)
149 cd08561 GDPD_cytoplasmic_ScUgp 53.1 21 0.00046 32.8 4.4 31 48-78 210-241 (249)
150 cd08565 GDPD_pAtGDE_like Glyce 53.1 18 0.00038 33.6 3.9 30 50-79 201-231 (235)
151 TIGR01445 intein_Nterm intein 52.5 39 0.00084 25.6 5.1 59 282-340 5-73 (81)
152 cd06209 BenDO_FAD_NAD Benzoate 52.4 22 0.00048 31.8 4.3 49 278-332 59-110 (228)
153 cd08564 GDPD_GsGDE_like Glycer 52.0 20 0.00043 33.5 4.1 31 48-78 221-256 (265)
154 PRK14114 1-(5-phosphoribosyl)- 51.8 1E+02 0.0022 29.3 8.8 125 58-190 83-224 (241)
155 cd06208 CYPOR_like_FNR These f 51.7 15 0.00033 34.6 3.3 40 288-331 103-142 (286)
156 TIGR01588 citE citrate lyase, 51.5 1.1E+02 0.0024 29.6 9.1 73 132-204 24-108 (288)
157 cd02809 alpha_hydroxyacid_oxid 51.1 73 0.0016 30.6 7.9 72 117-191 180-258 (299)
158 PRK10684 HCP oxidoreductase, N 51.0 17 0.00038 35.0 3.6 57 270-331 54-118 (332)
159 cd01572 QPRTase Quinolinate ph 50.6 44 0.00096 32.3 6.3 42 159-203 182-223 (268)
160 PRK09454 ugpQ cytoplasmic glyc 50.6 20 0.00043 33.3 3.9 32 48-79 207-239 (249)
161 PRK06843 inosine 5-monophospha 50.5 31 0.00068 35.6 5.5 68 119-189 151-222 (404)
162 PRK07455 keto-hydroxyglutarate 50.3 1.1E+02 0.0025 27.7 8.5 118 59-203 26-150 (187)
163 cd06184 flavohem_like_fad_nad_ 50.1 20 0.00043 32.5 3.7 58 269-331 56-120 (247)
164 PRK09958 DNA-binding transcrip 50.1 1.2E+02 0.0027 25.3 8.2 68 132-201 45-114 (204)
165 TIGR01859 fruc_bis_ald_ fructo 50.0 42 0.00091 32.6 6.0 150 53-203 77-245 (282)
166 cd08583 PI-PLCc_GDPD_SF_unchar 49.6 22 0.00047 32.6 3.9 31 48-78 203-234 (237)
167 PRK13587 1-(5-phosphoribosyl)- 49.5 1.1E+02 0.0024 28.7 8.6 122 58-190 86-222 (234)
168 cd06218 DHOD_e_trans FAD/NAD b 49.4 24 0.00052 32.5 4.2 58 270-332 44-106 (246)
169 PRK06567 putative bifunctional 49.2 65 0.0014 37.3 8.1 91 215-314 790-889 (1028)
170 PLN02274 inosine-5'-monophosph 49.1 55 0.0012 34.5 7.1 121 56-191 246-382 (505)
171 PRK13585 1-(5-phosphoribosyl)- 48.8 1.2E+02 0.0026 27.7 8.5 99 92-194 5-110 (241)
172 PRK01033 imidazole glycerol ph 48.7 1.6E+02 0.0035 27.9 9.6 119 59-190 85-227 (258)
173 PRK08187 pyruvate kinase; Vali 48.6 72 0.0016 33.8 7.9 138 57-206 312-476 (493)
174 cd08563 GDPD_TtGDE_like Glycer 48.6 23 0.00049 32.1 3.8 31 48-78 198-229 (230)
175 cd08582 GDPD_like_2 Glyceropho 48.6 24 0.00052 32.0 4.0 31 48-78 199-230 (233)
176 COG0469 PykF Pyruvate kinase [ 48.3 15 0.00033 38.8 2.9 136 57-205 175-337 (477)
177 PRK13585 1-(5-phosphoribosyl)- 48.3 69 0.0015 29.2 6.9 125 58-191 86-224 (241)
178 cd08581 GDPD_like_1 Glyceropho 48.3 25 0.00054 32.5 4.1 30 48-77 197-227 (229)
179 PRK10643 DNA-binding transcrip 48.0 1.5E+02 0.0033 24.9 8.5 66 132-199 44-111 (222)
180 TIGR00693 thiE thiamine-phosph 47.8 1E+02 0.0022 27.1 7.7 104 60-188 16-122 (196)
181 PRK05802 hypothetical protein; 47.8 13 0.00029 36.3 2.3 86 215-312 64-160 (320)
182 PLN02274 inosine-5'-monophosph 47.6 31 0.00067 36.3 5.1 68 119-189 246-317 (505)
183 PF00218 IGPS: Indole-3-glycer 47.4 1.5E+02 0.0033 28.7 9.4 111 59-190 120-239 (254)
184 cd00429 RPE Ribulose-5-phospha 47.4 53 0.0011 28.8 5.8 22 58-79 68-89 (211)
185 PRK06806 fructose-bisphosphate 47.2 31 0.00067 33.6 4.7 132 58-192 85-233 (281)
186 PF14382 ECR1_N: Exosome compl 47.2 15 0.00031 26.3 1.8 38 284-323 1-38 (39)
187 cd08601 GDPD_SaGlpQ_like Glyce 47.2 31 0.00068 31.8 4.5 32 48-79 216-248 (256)
188 TIGR01305 GMP_reduct_1 guanosi 47.1 22 0.00047 36.3 3.7 68 119-189 105-178 (343)
189 cd04732 HisA HisA. Phosphorib 46.9 1.2E+02 0.0027 27.3 8.2 107 93-204 3-117 (234)
190 PF14623 Vint: Hint-domain 46.6 33 0.00071 31.7 4.5 48 281-330 6-56 (162)
191 cd08609 GDPD_GDE3 Glycerophosp 46.3 27 0.00058 34.5 4.2 38 48-87 243-281 (315)
192 cd00945 Aldolase_Class_I Class 46.3 63 0.0014 27.5 6.0 114 60-188 68-200 (201)
193 cd08610 GDPD_GDE6 Glycerophosp 46.1 29 0.00063 34.3 4.4 38 48-87 243-281 (316)
194 PRK00043 thiE thiamine-phospha 46.0 1E+02 0.0022 27.2 7.4 105 60-189 24-131 (212)
195 cd04731 HisF The cyclase subun 45.1 2.3E+02 0.005 26.0 9.8 123 61-203 31-192 (243)
196 cd06187 O2ase_reductase_like T 45.0 31 0.00067 30.5 4.0 48 278-331 54-105 (224)
197 cd06195 FNR1 Ferredoxin-NADP+ 45.0 26 0.00057 31.7 3.6 50 278-332 56-109 (241)
198 PRK03659 glutathione-regulated 45.0 1.3E+02 0.0029 32.0 9.3 102 60-189 413-518 (601)
199 cd06216 FNR_iron_sulfur_bindin 45.0 1.5E+02 0.0032 26.9 8.4 100 214-331 16-129 (243)
200 cd06210 MMO_FAD_NAD_binding Me 44.5 1.2E+02 0.0027 27.1 7.8 57 270-331 51-115 (236)
201 cd01568 QPRTase_NadC Quinolina 44.4 63 0.0014 31.1 6.2 42 159-203 181-222 (269)
202 PRK08051 fre FMN reductase; Va 44.3 1.8E+02 0.0039 26.4 8.9 95 217-331 4-109 (232)
203 cd08612 GDPD_GDE4 Glycerophosp 44.2 33 0.00072 32.9 4.4 32 48-79 259-291 (300)
204 TIGR00735 hisF imidazoleglycer 44.1 2.2E+02 0.0047 26.8 9.6 125 58-190 84-230 (254)
205 PRK15447 putative protease; Pr 44.1 1.5E+02 0.0033 28.8 8.9 130 56-202 12-152 (301)
206 TIGR01182 eda Entner-Doudoroff 43.8 1.4E+02 0.003 28.1 8.3 122 59-204 22-147 (204)
207 cd06215 FNR_iron_sulfur_bindin 43.3 28 0.00061 30.9 3.5 49 278-331 59-110 (231)
208 PRK13794 hypothetical protein; 42.9 32 0.0007 35.8 4.3 51 273-325 127-182 (479)
209 COG0135 TrpF Phosphoribosylant 42.9 1.8E+02 0.0038 27.6 8.8 121 58-184 10-181 (208)
210 cd01573 modD_like ModD; Quinol 42.8 59 0.0013 31.5 5.8 41 160-203 184-224 (272)
211 PRK10336 DNA-binding transcrip 42.4 92 0.002 26.2 6.3 67 132-200 44-112 (219)
212 COG1585 Membrane protein impli 42.3 47 0.001 29.4 4.7 32 281-312 101-134 (140)
213 PHA00440 host protein H-NS-int 42.1 16 0.00035 31.3 1.6 55 168-223 43-97 (98)
214 cd08579 GDPD_memb_like Glycero 42.0 31 0.00067 31.0 3.6 30 48-77 188-218 (220)
215 PRK09483 response regulator; P 42.0 1.7E+02 0.0037 24.7 8.0 40 159-199 75-114 (217)
216 TIGR01919 hisA-trpF 1-(5-phosp 41.9 1.3E+02 0.0029 28.4 8.0 129 58-190 84-226 (243)
217 PRK08883 ribulose-phosphate 3- 41.9 67 0.0015 30.1 5.9 126 60-202 71-214 (220)
218 PRK02083 imidazole glycerol ph 41.9 1.7E+02 0.0036 27.3 8.5 103 93-202 7-119 (253)
219 TIGR01768 GGGP-family geranylg 41.9 71 0.0015 30.6 6.1 71 118-191 132-210 (223)
220 TIGR00007 phosphoribosylformim 41.9 1.8E+02 0.004 26.3 8.6 104 96-203 5-115 (230)
221 cd08564 GDPD_GsGDE_like Glycer 41.8 48 0.001 31.0 4.9 45 148-197 212-261 (265)
222 TIGR03128 RuMP_HxlA 3-hexulose 41.8 1.8E+02 0.0039 25.8 8.4 90 111-203 55-156 (206)
223 COG0648 Nfo Endonuclease IV [D 41.6 12 0.00026 36.9 1.0 18 231-248 171-188 (280)
224 cd03691 BipA_TypA_II BipA_TypA 41.5 82 0.0018 24.3 5.5 54 281-340 17-71 (86)
225 PRK14024 phosphoribosyl isomer 41.2 1.4E+02 0.003 27.9 7.9 118 58-188 85-221 (241)
226 TIGR02276 beta_rpt_yvtn 40-res 41.0 56 0.0012 21.4 3.9 37 287-327 1-37 (42)
227 PF03060 NMO: Nitronate monoox 41.0 1.2E+02 0.0026 29.7 7.7 107 61-191 104-221 (330)
228 cd06200 SiR_like1 Cytochrome p 40.5 40 0.00086 31.2 4.1 36 290-331 79-116 (245)
229 TIGR01941 nqrF NADH:ubiquinone 40.4 37 0.00079 34.0 4.1 40 286-331 237-277 (405)
230 PRK13856 two-component respons 40.4 2E+02 0.0044 25.3 8.4 67 132-199 45-112 (241)
231 COG1465 Predicted alternative 40.3 24 0.00051 36.0 2.8 35 167-201 12-47 (376)
232 PRK14560 putative RNA-binding 40.1 49 0.0011 29.3 4.5 53 273-327 79-136 (160)
233 PRK09427 bifunctional indole-3 40.1 1.1E+02 0.0024 32.0 7.7 80 115-201 217-303 (454)
234 cd06214 PA_degradation_oxidore 40.1 2.8E+02 0.006 24.9 9.4 99 217-331 3-115 (241)
235 PRK06247 pyruvate kinase; Prov 40.1 85 0.0019 33.2 6.9 132 58-205 174-331 (476)
236 PRK10046 dpiA two-component re 39.9 1.4E+02 0.003 26.7 7.3 66 132-199 50-117 (225)
237 cd06183 cyt_b5_reduct_like Cyt 39.8 1.8E+02 0.004 25.6 8.1 49 278-331 60-111 (234)
238 PRK06552 keto-hydroxyglutarate 39.7 2.7E+02 0.0059 26.1 9.5 124 59-203 27-153 (213)
239 PRK00748 1-(5-phosphoribosyl)- 39.7 2E+02 0.0044 26.0 8.5 39 162-203 79-117 (233)
240 PF04131 NanE: Putative N-acet 39.7 1.1E+02 0.0023 29.1 6.8 113 61-187 3-117 (192)
241 PF00977 His_biosynth: Histidi 39.7 1.3E+02 0.0028 28.0 7.3 128 52-190 75-221 (229)
242 cd08574 GDPD_GDE_2_3_6 Glycero 39.5 34 0.00074 32.0 3.6 29 49-77 222-251 (252)
243 cd07896 Adenylation_kDNA_ligas 39.5 70 0.0015 27.9 5.3 29 165-193 130-159 (174)
244 PRK10430 DNA-binding transcrip 39.3 1.5E+02 0.0033 26.5 7.6 66 132-199 49-116 (239)
245 cd06188 NADH_quinone_reductase 39.2 42 0.00091 31.5 4.1 39 287-331 118-157 (283)
246 PRK05581 ribulose-phosphate 3- 39.1 72 0.0016 28.4 5.4 29 51-79 64-93 (220)
247 COG0684 MenG Demethylmenaquino 39.0 22 0.00049 33.8 2.3 26 293-319 64-89 (210)
248 CHL00148 orf27 Ycf27; Reviewed 38.9 1E+02 0.0022 26.4 6.2 66 132-199 50-116 (240)
249 COG2022 ThiG Uncharacterized e 38.9 28 0.0006 34.3 2.9 39 148-190 174-212 (262)
250 PRK07226 fructose-bisphosphate 38.7 96 0.0021 29.4 6.5 69 132-204 173-252 (267)
251 COG0084 TatD Mg-dependent DNas 38.7 14 0.00031 35.6 1.0 23 58-80 18-40 (256)
252 KOG3997 Major apurinic/apyrimi 38.5 10 0.00022 37.2 -0.0 14 231-244 175-188 (281)
253 PRK11517 transcriptional regul 38.3 1E+02 0.0022 26.1 6.0 66 132-199 44-110 (223)
254 PRK05567 inosine 5'-monophosph 38.2 1.7E+02 0.0038 30.3 8.7 118 59-191 229-362 (486)
255 TIGR01744 XPRTase xanthine pho 38.2 31 0.00066 31.7 3.0 32 280-312 96-132 (191)
256 PRK05718 keto-hydroxyglutarate 38.1 2E+02 0.0044 27.0 8.4 124 60-207 30-157 (212)
257 cd00381 IMPDH IMPDH: The catal 38.0 1.3E+02 0.0028 29.7 7.4 111 58-188 46-162 (325)
258 PRK04000 translation initiatio 37.6 3.1E+02 0.0067 27.8 10.2 105 217-321 271-411 (411)
259 PRK05464 Na(+)-translocating N 37.4 42 0.00092 33.6 4.1 38 288-331 244-281 (409)
260 cd00958 DhnA Class I fructose- 37.4 1.1E+02 0.0023 28.0 6.4 73 118-195 140-225 (235)
261 cd04730 NPD_like 2-Nitropropan 37.3 1.3E+02 0.0028 27.1 6.8 51 132-190 80-130 (236)
262 PRK07315 fructose-bisphosphate 37.3 88 0.0019 30.7 6.1 136 53-192 80-235 (293)
263 PRK01222 N-(5'-phosphoribosyl) 37.2 2.7E+02 0.0059 25.8 9.0 117 58-193 11-135 (210)
264 PRK13534 7-cyano-7-deazaguanin 37.0 25 0.00055 38.2 2.6 44 282-328 580-623 (639)
265 COG0543 UbiB 2-polyprenylpheno 36.7 36 0.00078 32.0 3.3 100 217-330 9-113 (252)
266 PRK13957 indole-3-glycerol-pho 36.7 3.6E+02 0.0077 26.3 10.0 115 59-195 113-241 (247)
267 PRK02290 3-dehydroquinate synt 36.2 23 0.0005 36.1 2.0 34 169-202 13-46 (344)
268 cd08556 GDPD Glycerophosphodie 36.2 45 0.00097 28.3 3.5 30 48-77 158-188 (189)
269 PRK13795 hypothetical protein; 36.1 40 0.00087 36.3 3.9 53 273-327 129-185 (636)
270 cd08580 GDPD_Rv2277c_like Glyc 36.1 50 0.0011 31.7 4.2 30 50-79 230-260 (263)
271 TIGR01387 cztR_silR_copR heavy 35.7 1.5E+02 0.0033 24.8 6.6 66 132-199 42-109 (218)
272 cd01571 NAPRTase_B Nicotinate 35.5 74 0.0016 31.2 5.3 46 160-205 185-240 (302)
273 COG1908 FrhD Coenzyme F420-red 35.4 29 0.00063 31.1 2.3 45 170-214 41-98 (132)
274 cd02812 PcrB_like PcrB_like pr 35.3 1.5E+02 0.0033 28.2 7.2 128 53-191 57-206 (219)
275 PRK11083 DNA-binding response 35.3 1.3E+02 0.0028 25.5 6.1 66 132-199 47-114 (228)
276 COG0157 NadC Nicotinate-nucleo 35.2 86 0.0019 31.3 5.7 53 148-203 174-229 (280)
277 TIGR02160 PA_CoA_Oxy5 phenylac 35.1 38 0.00082 32.7 3.2 44 286-332 72-117 (352)
278 PRK08072 nicotinate-nucleotide 35.0 1.1E+02 0.0023 30.0 6.3 41 160-203 189-229 (277)
279 PRK13586 1-(5-phosphoribosyl)- 34.9 3.5E+02 0.0077 25.5 9.5 125 58-188 83-217 (232)
280 cd00452 KDPG_aldolase KDPG and 34.9 1.1E+02 0.0023 27.5 5.8 79 113-197 8-91 (190)
281 cd08555 PI-PLCc_GDPD_SF Cataly 34.8 48 0.001 29.1 3.6 28 49-76 148-177 (179)
282 PRK12778 putative bifunctional 34.8 56 0.0012 35.3 4.8 55 270-330 44-104 (752)
283 PRK10360 DNA-binding transcrip 34.7 2.7E+02 0.0058 23.1 8.9 65 132-199 47-111 (196)
284 cd08612 GDPD_GDE4 Glycerophosp 34.3 82 0.0018 30.3 5.3 45 149-198 251-296 (300)
285 PTZ00314 inosine-5'-monophosph 34.3 92 0.002 32.7 6.1 66 119-188 239-309 (495)
286 cd03174 DRE_TIM_metallolyase D 33.9 92 0.002 28.3 5.4 93 148-244 53-176 (265)
287 PF00107 ADH_zinc_N: Zinc-bind 33.9 2.4E+02 0.0053 22.4 9.2 110 51-180 15-129 (130)
288 PRK06201 hypothetical protein; 33.9 27 0.00059 32.7 2.0 42 277-319 54-98 (221)
289 cd08567 GDPD_SpGDE_like Glycer 33.3 54 0.0012 30.0 3.8 31 48-78 229-260 (263)
290 PF01959 DHQS: 3-dehydroquinat 33.2 26 0.00057 35.8 1.9 31 172-202 15-45 (354)
291 PRK06512 thiamine-phosphate py 33.1 2.3E+02 0.005 26.6 7.9 102 60-190 29-139 (221)
292 cd06191 FNR_iron_sulfur_bindin 32.9 39 0.00085 30.2 2.8 48 278-331 58-109 (231)
293 cd00508 MopB_CT_Fdh-Nap-like T 32.8 55 0.0012 26.2 3.3 25 296-324 48-72 (120)
294 PTZ00327 eukaryotic translatio 32.7 2.2E+02 0.0049 29.7 8.5 56 266-321 386-450 (460)
295 TIGR00219 mreC rod shape-deter 32.5 4.8E+02 0.01 25.4 11.0 120 194-322 98-242 (283)
296 cd06206 bifunctional_CYPOR The 32.1 50 0.0011 32.8 3.6 40 287-331 196-237 (384)
297 PRK08649 inosine 5-monophospha 32.1 1.5E+02 0.0032 30.2 6.9 122 53-191 134-287 (368)
298 cd08608 GDPD_GDE2 Glycerophosp 32.0 68 0.0015 32.4 4.5 31 49-79 222-253 (351)
299 PRK11475 DNA-binding transcrip 31.8 1.1E+02 0.0023 28.2 5.4 41 159-199 68-108 (207)
300 cd08610 GDPD_GDE6 Glycerophosp 31.8 76 0.0016 31.4 4.8 54 142-201 229-283 (316)
301 PF14801 GCD14_N: tRNA methylt 31.7 50 0.0011 25.7 2.7 20 297-316 6-25 (54)
302 PRK09206 pyruvate kinase; Prov 31.7 1E+02 0.0022 32.6 5.8 97 97-194 146-248 (470)
303 COG0503 Apt Adenine/guanine ph 31.7 28 0.0006 31.6 1.6 67 246-312 56-131 (179)
304 PRK07609 CDP-6-deoxy-delta-3,4 31.6 46 0.00099 32.0 3.1 96 216-331 103-211 (339)
305 COG3836 HpcH 2,4-dihydroxyhept 31.6 67 0.0015 31.7 4.2 133 57-193 76-240 (255)
306 TIGR01588 citE citrate lyase, 31.5 4.9E+02 0.011 25.2 10.6 124 54-194 6-157 (288)
307 PF04203 Sortase: Sortase fami 31.5 62 0.0013 26.6 3.5 35 287-321 51-85 (128)
308 PRK07455 keto-hydroxyglutarate 31.5 3.2E+02 0.007 24.8 8.4 77 114-196 17-98 (187)
309 PRK11143 glpQ glycerophosphodi 31.4 66 0.0014 32.3 4.3 51 146-198 290-349 (355)
310 cd06219 DHOD_e_trans_like1 FAD 31.3 60 0.0013 29.9 3.7 56 270-331 43-104 (248)
311 PF01053 Cys_Met_Meta_PP: Cys/ 31.3 50 0.0011 33.4 3.5 118 61-184 61-194 (386)
312 PRK09836 DNA-binding transcrip 31.3 1.5E+02 0.0032 25.5 5.9 66 132-199 44-111 (227)
313 PRK09774 fec operon regulator 31.1 2.5E+02 0.0055 27.4 8.2 56 226-285 123-180 (319)
314 PRK10529 DNA-binding transcrip 30.9 2.9E+02 0.0063 23.6 7.7 66 132-199 45-111 (225)
315 PRK02615 thiamine-phosphate py 30.9 2.4E+02 0.0052 28.6 8.1 102 60-189 160-267 (347)
316 COG0159 TrpA Tryptophan syntha 30.7 3.2E+02 0.007 27.0 8.8 115 60-191 112-235 (265)
317 PRK07695 transcriptional regul 30.7 3.9E+02 0.0085 23.9 10.0 103 60-190 18-123 (201)
318 PLN03115 ferredoxin--NADP(+) r 30.5 33 0.00071 34.7 2.0 39 288-330 183-221 (367)
319 TIGR03815 CpaE_hom_Actino heli 30.4 1.5E+02 0.0032 28.5 6.3 63 132-199 19-81 (322)
320 TIGR01769 GGGP geranylgeranylg 30.3 86 0.0019 29.5 4.6 127 52-188 55-204 (205)
321 cd08579 GDPD_memb_like Glycero 30.1 4.1E+02 0.0089 23.9 9.0 64 140-203 77-147 (220)
322 PRK15479 transcriptional regul 30.1 1.8E+02 0.0038 24.5 6.1 39 160-199 73-111 (221)
323 PF04085 MreC: rod shape-deter 29.9 1.6E+02 0.0034 25.9 6.0 55 272-326 61-125 (152)
324 PLN02363 phosphoribosylanthran 29.9 4.7E+02 0.01 25.3 9.7 118 53-191 47-178 (256)
325 PF01079 Hint: Hint module; I 29.9 2.6E+02 0.0055 26.6 7.7 104 211-325 17-135 (217)
326 PRK06801 hypothetical protein; 29.9 1.5E+02 0.0032 29.2 6.4 145 58-203 85-248 (286)
327 COG1064 AdhP Zn-dependent alco 29.7 4.6E+02 0.01 26.7 9.9 123 52-198 192-319 (339)
328 TIGR03275 methan_mark_8 putati 29.4 3.3E+02 0.0073 27.1 8.5 130 59-204 77-213 (259)
329 PRK08999 hypothetical protein; 29.1 4.8E+02 0.01 24.8 9.5 123 61-189 148-308 (312)
330 PRK10766 DNA-binding transcrip 29.0 3.1E+02 0.0067 23.3 7.5 38 160-198 74-111 (221)
331 TIGR03572 WbuZ glycosyl amidat 28.9 4.5E+02 0.0097 23.9 10.0 134 52-190 76-228 (232)
332 cd02810 DHOD_DHPD_FMN Dihydroo 28.8 4.9E+02 0.011 24.4 9.5 136 56-191 19-198 (289)
333 PRK14114 1-(5-phosphoribosyl)- 28.4 4.5E+02 0.0098 25.0 9.1 103 93-201 4-117 (241)
334 PRK05096 guanosine 5'-monophos 28.4 50 0.0011 33.8 2.9 69 119-187 106-177 (346)
335 cd08561 GDPD_cytoplasmic_ScUgp 28.3 1.1E+02 0.0024 28.1 5.0 50 142-197 196-246 (249)
336 PF09872 DUF2099: Uncharacteri 28.1 2.9E+02 0.0062 27.5 7.8 150 36-203 56-212 (258)
337 TIGR03684 arCOG00985 arCOG0415 28.0 94 0.002 27.2 4.2 53 273-328 72-130 (150)
338 cd06202 Nitric_oxide_synthase 27.9 51 0.0011 33.2 2.9 39 288-331 214-253 (406)
339 PLN02252 nitrate reductase [NA 27.8 2.5E+02 0.0054 31.9 8.4 109 216-331 635-765 (888)
340 TIGR03787 marine_sort_RR prote 27.7 1E+02 0.0022 26.4 4.3 67 132-199 44-113 (227)
341 PRK11107 hybrid sensory histid 27.6 4.7E+02 0.01 28.0 10.0 135 59-198 617-779 (919)
342 PRK06843 inosine 5-monophospha 27.2 2.9E+02 0.0062 28.8 8.1 120 53-191 148-287 (404)
343 PTZ00300 pyruvate kinase; Prov 26.9 96 0.0021 32.6 4.7 61 132-194 160-222 (454)
344 PRK10816 DNA-binding transcrip 26.8 3.8E+02 0.0082 22.9 7.7 66 132-199 44-111 (223)
345 cd06182 CYPOR_like NADPH cytoc 26.8 66 0.0014 30.4 3.2 40 288-331 83-122 (267)
346 PF07591 PT-HINT: Pretoxin HIN 26.7 21 0.00046 30.7 0.0 49 284-333 2-52 (130)
347 PRK10537 voltage-gated potassi 26.7 4.6E+02 0.01 26.8 9.4 71 113-192 285-359 (393)
348 cd08568 GDPD_TmGDE_like Glycer 26.1 2.1E+02 0.0045 26.0 6.2 58 145-203 78-138 (226)
349 PF03061 4HBT: Thioesterase su 26.1 87 0.0019 22.6 3.2 31 288-323 35-65 (79)
350 PRK04128 1-(5-phosphoribosyl)- 25.8 2.5E+02 0.0055 26.3 6.9 68 118-193 30-106 (228)
351 TIGR01304 IMP_DH_rel_2 IMP deh 25.8 1E+02 0.0022 31.4 4.6 51 131-189 154-216 (369)
352 PF04225 OapA: Opacity-associa 25.7 1.5E+02 0.0033 24.0 4.7 48 288-339 34-82 (85)
353 PF14031 D-ser_dehydrat: Putat 25.7 3.7E+02 0.0081 22.0 7.5 24 279-306 53-76 (94)
354 PRK06354 pyruvate kinase; Prov 25.6 1.3E+02 0.0028 32.7 5.5 63 131-194 190-254 (590)
355 PRK09935 transcriptional regul 25.5 2.5E+02 0.0055 23.3 6.2 39 160-199 78-116 (210)
356 cd08601 GDPD_SaGlpQ_like Glyce 25.5 1.3E+02 0.0028 27.8 4.9 45 149-198 208-253 (256)
357 PRK10610 chemotaxis regulatory 25.4 2.6E+02 0.0057 20.2 5.7 29 170-198 90-118 (129)
358 cd08606 GDPD_YPL110cp_fungi Gl 25.4 1E+02 0.0023 29.0 4.3 45 149-198 235-282 (286)
359 cd08556 GDPD Glycerophosphodie 25.1 3.1E+02 0.0067 23.2 6.8 58 145-203 48-111 (189)
360 cd02786 MopB_CT_3 The MopB_CT_ 24.9 1.2E+02 0.0026 24.4 4.0 24 296-323 44-67 (116)
361 PRK10403 transcriptional regul 24.8 2.8E+02 0.006 22.9 6.3 38 161-199 82-119 (215)
362 cd08606 GDPD_YPL110cp_fungi Gl 24.8 1.1E+02 0.0024 28.8 4.4 32 48-79 243-277 (286)
363 PF07085 DRTGG: DRTGG domain; 24.7 1.3E+02 0.0028 24.3 4.2 40 49-88 39-85 (105)
364 PRK08558 adenine phosphoribosy 24.2 72 0.0016 30.3 3.0 32 281-312 153-191 (238)
365 cd04451 S1_IF1 S1_IF1: Transla 23.9 2.6E+02 0.0057 20.9 5.5 45 244-306 4-50 (64)
366 PLN02334 ribulose-phosphate 3- 23.9 5.1E+02 0.011 23.8 8.4 109 60-188 23-145 (229)
367 PRK15369 two component system 23.8 2.6E+02 0.0056 22.8 5.9 38 161-199 79-116 (211)
368 TIGR02154 PhoB phosphate regul 23.8 1.3E+02 0.0029 25.2 4.2 38 160-198 77-114 (226)
369 cd06166 Sortase_D_5 Sortase D 23.5 1.8E+02 0.0039 24.5 5.0 31 290-321 58-88 (126)
370 TIGR00451 unchar_dom_2 unchara 23.5 1.3E+02 0.0028 24.7 4.1 54 271-327 31-90 (107)
371 PRK09468 ompR osmolarity respo 23.5 4.7E+02 0.01 22.7 7.7 66 132-199 49-116 (239)
372 PRK03562 glutathione-regulated 23.5 5.8E+02 0.012 27.5 9.8 118 51-193 401-522 (621)
373 CHL00162 thiG thiamin biosynth 23.5 96 0.0021 30.8 3.8 47 148-198 181-232 (267)
374 cd00377 ICL_PEPM Members of th 23.5 2.5E+02 0.0054 26.5 6.4 58 144-201 119-193 (243)
375 TIGR01303 IMP_DH_rel_1 IMP deh 23.3 87 0.0019 32.8 3.6 74 111-187 216-292 (475)
376 cd02778 MopB_CT_Thiosulfate-R- 23.3 1.2E+02 0.0025 24.6 3.7 56 256-323 11-66 (123)
377 PF06506 PrpR_N: Propionate ca 23.2 3E+02 0.0065 24.3 6.6 36 59-94 22-58 (176)
378 COG1385 Uncharacterized protei 23.2 1.1E+02 0.0023 29.5 4.0 47 271-317 5-54 (246)
379 PRK15447 putative protease; Pr 23.1 2.1E+02 0.0045 27.9 6.0 68 132-201 28-105 (301)
380 cd00288 Pyruvate_Kinase Pyruva 23.0 1.7E+02 0.0036 31.0 5.6 61 132-194 187-249 (480)
381 cd08605 GDPD_GDE5_like_1_plant 23.0 98 0.0021 29.1 3.6 29 49-77 249-280 (282)
382 cd06190 T4MO_e_transfer_like T 22.9 1.2E+02 0.0025 27.2 3.9 49 278-331 53-104 (232)
383 TIGR02798 ligK_PcmE 4-carboxy- 22.9 58 0.0013 30.9 2.1 42 277-319 50-94 (222)
384 cd05828 Sortase_D_4 Sortase D 22.9 1.1E+02 0.0025 25.7 3.7 30 291-321 56-85 (127)
385 TIGR01931 cysJ sulfite reducta 22.8 74 0.0016 34.0 3.1 58 268-330 381-456 (597)
386 COG0352 ThiE Thiamine monophos 22.7 6.6E+02 0.014 23.8 10.2 120 63-203 74-206 (211)
387 COG2871 NqrF Na+-transporting 22.7 66 0.0014 33.0 2.6 54 268-334 232-285 (410)
388 PRK09454 ugpQ cytoplasmic glyc 22.6 1.1E+02 0.0024 28.4 3.8 47 143-195 194-241 (249)
389 cd03174 DRE_TIM_metallolyase D 22.5 5.9E+02 0.013 23.1 10.0 38 167-204 143-185 (265)
390 cd00727 malate_synt_A Malate s 22.4 4.5E+02 0.0097 28.4 8.6 129 59-204 76-240 (511)
391 PRK10161 transcriptional regul 22.2 5.1E+02 0.011 22.2 8.4 66 132-199 46-115 (229)
392 KOG2797 Prephenate dehydratase 21.9 92 0.002 32.1 3.3 59 248-326 258-316 (377)
393 PF05690 ThiG: Thiazole biosyn 21.8 57 0.0012 32.0 1.8 45 148-196 167-216 (247)
394 cd08608 GDPD_GDE2 Glycerophosp 21.7 1.5E+02 0.0032 30.0 4.8 54 142-201 207-261 (351)
395 cd02794 MopB_CT_DmsA-EC The Mo 21.6 1.5E+02 0.0032 24.3 4.0 24 296-323 43-66 (121)
396 PF11303 DUF3105: Protein of u 21.5 1.3E+02 0.0028 26.5 3.8 34 172-205 40-74 (130)
397 PF03009 GDPD: Glycerophosphor 21.5 94 0.002 27.2 3.0 31 48-78 220-253 (256)
398 PF02662 FlpD: Methyl-viologen 21.4 80 0.0017 27.1 2.5 19 59-77 41-59 (124)
399 PRK11173 two-component respons 21.3 5.4E+02 0.012 22.4 7.7 43 160-203 75-118 (237)
400 PRK05967 cystathionine beta-ly 21.3 54 0.0012 33.3 1.7 115 63-184 72-202 (395)
401 cd08559 GDPD_periplasmic_GlpQ_ 21.2 89 0.0019 30.0 3.0 30 48-77 254-294 (296)
402 cd08580 GDPD_Rv2277c_like Glyc 20.9 1.2E+02 0.0025 29.2 3.7 46 143-194 214-261 (263)
403 cd06194 FNR_N-term_Iron_sulfur 20.7 2.1E+02 0.0046 25.3 5.1 50 278-331 52-104 (222)
404 PF03102 NeuB: NeuB family; I 20.5 3.5E+02 0.0075 26.0 6.8 75 111-188 70-145 (241)
405 cd08609 GDPD_GDE3 Glycerophosp 20.5 1.8E+02 0.0038 28.8 5.0 48 151-203 237-285 (315)
406 PRK10651 transcriptional regul 20.5 3.9E+02 0.0084 22.2 6.4 39 160-199 81-119 (216)
407 TIGR00186 rRNA_methyl_3 rRNA m 20.5 4.1E+02 0.0088 24.9 7.2 76 116-192 46-125 (237)
408 PRK02268 hypothetical protein; 20.4 1E+02 0.0022 27.8 3.0 47 275-321 14-67 (141)
409 cd00429 RPE Ribulose-5-phospha 20.1 3.5E+02 0.0077 23.6 6.3 63 132-196 25-94 (211)
410 TIGR00735 hisF imidazoleglycer 20.0 4.5E+02 0.0099 24.6 7.4 103 95-203 9-120 (254)
No 1
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=6.9e-111 Score=814.83 Aligned_cols=286 Identities=47% Similarity=0.774 Sum_probs=271.0
Q ss_pred cEEEE-----EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeee---cCCcc------ccCCCCeeEEEEE
Q 018935 51 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGEV------YDSGDRRVGSIIE 116 (348)
Q Consensus 51 K~vWi-----w~~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~---~~g~~------~~~~gk~v~~~~~ 116 (348)
|++|| |+++|++||+|||+|||+|++++++.+++++|+++.++.+..- +++.. ++..|+.++.+++
T Consensus 1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 80 (354)
T PF01959_consen 1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE 80 (354)
T ss_pred CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence 78999 8899999999999999999999999999999999999885332 22322 3577999999999
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 018935 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (348)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v 196 (348)
|.++++++.++...+..+|+|++++||||||||||||++|+++++||+.|+|++||+++|++||+|+|||+|+|+|++++
T Consensus 81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei 160 (354)
T PF01959_consen 81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI 160 (354)
T ss_pred ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee
Q 018935 197 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN 276 (348)
Q Consensus 197 ~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN 276 (348)
++++++++.+ ++++++|++||||+|+|+||||||||||||+|+|||||||||||+|||||||||++||||++||||||
T Consensus 161 ~~~~~~~~~~--~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVN 238 (354)
T PF01959_consen 161 KALVALLKER--SQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVN 238 (354)
T ss_pred HHHHHHHhhc--cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceEe
Confidence 9999998642 66789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEEEECCEe
Q 018935 277 AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLF 338 (348)
Q Consensus 277 AGaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeAe~~G~~ 338 (348)
|||||||+++|||||+|||||+|||+||+||++|++|+++|||||||+||||||||+++|+.
T Consensus 239 AGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~RPLllIeA~~~g~~ 300 (354)
T PF01959_consen 239 AGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIERRPLLLIEAEADGKR 300 (354)
T ss_pred cCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEeecceEEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 2
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=1e-110 Score=810.95 Aligned_cols=282 Identities=43% Similarity=0.681 Sum_probs=266.5
Q ss_pred CcEEEEEeCc-----hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCC---ccccCCCCeeEEEEEecChh
Q 018935 50 PKRVWIWTES-----KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEG---EVYDSGDRRVGSIIEVSTPQ 121 (348)
Q Consensus 50 ~K~vWiw~~~-----K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g---~~~~~~gk~v~~~~~v~~~e 121 (348)
+|++|||.++ |++||+|||||||+|++++++++.+++|+++.. +..+++ ..++.+|++++.|++|.+++
T Consensus 1 mK~vWi~~~~~~~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i~~---~~~~~~~~~~~~~~~~~~~~~~v~i~~~~ 77 (344)
T PRK02290 1 MKFVWIKARPDWEERKEVVTTALESGVDGVVVDEEDVERVRELGRIKV---AADDPDADAVVISGSAGEDGAYVEIRDKE 77 (344)
T ss_pred CceEEEEcCCCchhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCeeE---EEEcCCcchhhhcccCCceEEEEEECCHH
Confidence 6999999988 999999999999999999977777777777644 444555 34678899999999999999
Q ss_pred hhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 018935 122 ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (348)
Q Consensus 122 d~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (348)
|++.++...+.++++|++++||||||||||||+| +++++||+.++|++||+++|++||+|+|||+|+|+|+++++++++
T Consensus 78 ~e~~a~~~~~~~~~viv~~~dW~iIPlEnlIA~~-~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~ 156 (344)
T PRK02290 78 DEEFAAELAKEVDYVIVEGRDWTIIPLENLIADL-GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVA 156 (344)
T ss_pred HHHHHHHhhccCCEEEEECCCCcEecHHHHHhhh-cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHH
Confidence 9999999988889999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCce
Q 018935 202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVH 281 (348)
Q Consensus 202 ~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVH 281 (348)
+++. ++++++|++||||+|+|+||||||||||||+|++||||||||+|+|||||||||+++|||++|||||||||||
T Consensus 157 ~~~~---~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVh 233 (344)
T PRK02290 157 LIEE---AREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNAGAVH 233 (344)
T ss_pred HHhc---cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccCCCeeEecCcce
Confidence 8864 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEEEECCEe
Q 018935 282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKVIKLF 338 (348)
Q Consensus 282 aYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeAe~~G~~ 338 (348)
||+++|||||+|||||+|||+||+||++|++|+++|||||||+|||+||||+++|+.
T Consensus 234 aYv~~pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeAe~~g~~ 290 (344)
T PRK02290 234 AYVRVPGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEAEYGGKR 290 (344)
T ss_pred eEEEcCCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEEEeCCeE
Confidence 999999999999999999999999999999999999999999999999999998873
No 3
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-107 Score=775.22 Aligned_cols=287 Identities=43% Similarity=0.716 Sum_probs=270.1
Q ss_pred CCcEEEE------EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeee-----eee--cCC--------------
Q 018935 49 KPKRVWI------WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP-----LFI--KEG-------------- 101 (348)
Q Consensus 49 ~~K~vWi------w~~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~-----l~~--~~g-------------- 101 (348)
.+|++|+ |++.|..+|+|||+|+|++++++++.+.+++||++.++.| +++ ++|
T Consensus 1 ~mK~vWl~a~~~~WeekK~~it~alEaG~d~vvv~~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~ 80 (376)
T COG1465 1 MMKEVWLLAEDESWEEKKKRITAALEAGVDVVVVRPADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISG 80 (376)
T ss_pred CcceEEEEcCCcchhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccc
Confidence 4799999 7788999999999999999999999999999999999988 222 333
Q ss_pred -------ccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHH
Q 018935 102 -------EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI 174 (348)
Q Consensus 102 -------~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~ 174 (348)
..+...|+.++.|+.|.++++++.++.....+||+|+.++||||||||||||++|+.+++|||.|+|++||++
T Consensus 81 s~di~~~~~~~~~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWkiIPLENlIA~l~~e~~kliA~V~saeEA~v 160 (376)
T COG1465 81 SADIEALRELMDRGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKIIPLENLIADLQHEKVKLIAGVKSAEEARV 160 (376)
T ss_pred cccHHHHHHhhhcCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceEeeHHHHHHHhhccceEEEEEeccHHHHHH
Confidence 1335679999999999999997767766667899999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCce
Q 018935 175 FLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARG 254 (348)
Q Consensus 175 al~~LE~G~DGVvl~~~d~~~v~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGS~S~g 254 (348)
||++||+|+|||+|.++|+++|+++.++++. .++++++|++|+||+|+|+|+||||||||||||.+||||||||+|+|
T Consensus 161 A~eTLE~GaDgVll~~~d~~eIk~~~~~~~e--~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~g 238 (376)
T COG1465 161 ALETLEKGADGVLLDSDDPEEIKKTAEVVEE--AESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRG 238 (376)
T ss_pred HHHHHhccCceEEeCCCCHHHHHHHHHHHHH--hccceeEEEEEEEEEEeecCCCceEEEeeecccccCCceEeecccCc
Confidence 9999999999999999999999999998864 57789999999999999999999999999999999999999999999
Q ss_pred EEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEEEE
Q 018935 255 LFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKV 334 (348)
Q Consensus 255 lFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeAe~ 334 (348)
||||||||.+||||++|||||||||||||+++|||||+||+||++||+|++||.+|++|.++|||+|||+|||+||||++
T Consensus 239 mFlVhsEs~espYVAaRPFRVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeAey 318 (376)
T COG1465 239 MFLVHSESEESPYVAARPFRVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEAEY 318 (376)
T ss_pred EEEEecccccCcccccCceeecccceeEEEEcCCCceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeecCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCE
Q 018935 335 IKL 337 (348)
Q Consensus 335 ~G~ 337 (348)
+|.
T Consensus 319 ~g~ 321 (376)
T COG1465 319 EGV 321 (376)
T ss_pred cCc
Confidence 887
No 4
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=94.95 E-value=0.065 Score=50.28 Aligned_cols=63 Identities=25% Similarity=0.332 Sum_probs=40.3
Q ss_pred CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEee----eeEEeeccceeEEEEEECCEeeee
Q 018935 279 PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVV----GRVKIESRPLILVEAKVIKLFTAS 341 (348)
Q Consensus 279 aVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~V----GRvKIE~RPLlLIeAe~~G~~~~~ 341 (348)
|-.|.|.+++|.++-++||+.||+||++|.+|+..-..| -|-.-.++.++-||.+.+-.+..+
T Consensus 14 pg~a~V~~~~G~~k~m~~L~iGD~Vla~d~~G~~~yS~V~~flhr~~~~~~~F~~i~te~g~~l~LT 80 (217)
T PF01079_consen 14 PGDATVTLEDGGRKRMSDLKIGDRVLAVDSDGKLVYSPVIMFLHRDPEQRAEFVVIETEDGRSLTLT 80 (217)
T ss_dssp -TT-EEEBTTS-EEEGGG--TT-EEEEE-TTS-EEEEEEEEEEEEEEEEEEEEEEEEETTS-EEEE-
T ss_pred CCCCEEEeCCCCEeEHHHCCCCCEEEEecCCCcEEEEeEEEEeccCccccEEEEEEEcCCCCeEEec
Confidence 446789999999999999999999999999998654332 344456677888887766555443
No 5
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=92.82 E-value=1.2 Score=40.13 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=66.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch--hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 58 ESKQVMTAAVERGWNTFVFLSENQ--QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~~--e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
.+.+.+..++|.|+|++++...+. +..+++-+-. ..-|.. .++.+.+.++++++... ..++
T Consensus 82 ~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~-------------~~~g~~--~~v~v~~~~e~~~~~~~--g~~~ 144 (217)
T cd00331 82 IDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA-------------RELGME--VLVEVHDEEELERALAL--GAKI 144 (217)
T ss_pred cCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH-------------HHcCCe--EEEEECCHHHHHHHHHc--CCCE
Confidence 456689999999999998653221 2222221110 011222 35677888887766543 5788
Q ss_pred EEEeCCCCeeee--h---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 136 IVIDLPDWQVIP--A---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 136 vvv~~~DW~iIP--l---ENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
+.+..+|-+..+ + +++.+.+. .+..+++ -++++++++.++ +.|+|||++-+
T Consensus 145 i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~---~~Ga~gvivGs 202 (217)
T cd00331 145 IGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTPEDVKRLA---EAGADAVLIGE 202 (217)
T ss_pred EEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHH---HcCCCEEEECH
Confidence 888876644433 2 33333321 2335554 578888888664 55999999754
No 6
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=92.61 E-value=0.39 Score=37.03 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=40.9
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEe-eeeEEee-ccceeEEEEEECCEeee
Q 018935 282 AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAV-VGRVKIE-SRPLILVEAKVIKLFTA 340 (348)
Q Consensus 282 aYv~~pggkT~YLSEL~aG~eVLvVd~~-G~tR~~~-VGRvKIE-~RPLlLIeAe~~G~~~~ 340 (348)
+.|++++|....+.+|+.||+|+.+|.. ++.+... +-..+-+ ..|++-|....+..+.+
T Consensus 7 t~V~~~~gg~~~i~~l~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~i~~ 68 (100)
T smart00306 7 TLVLTEDGGIKKIEELEEGDKVLALDEGTLKYSPVKVFLVREPKGEKKFYRIKTENGREITL 68 (100)
T ss_pred CEEEcCCCCEEEHHHcCCCCEEEEecCCCcEEEEEEEEEEEcCCcceeEEEEEECCCCEEEE
Confidence 5688999999999999999999999973 3322221 2222222 56888888776665554
No 7
>PRK05826 pyruvate kinase; Provisional
Probab=91.64 E-value=0.44 Score=49.42 Aligned_cols=135 Identities=18% Similarity=0.233 Sum_probs=89.8
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCC-eeEEEEEecChhhhhhhccccCCCCe
Q 018935 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk-~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
.+++.+.-|++.|+|.|+++- .+++.++++.++ +...|. .+..+.+|.+++.++.+-.-+...|-
T Consensus 174 ~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~-------------l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 174 KDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRL-------------LREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred hhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 478899999999999999985 345555555432 233344 56788899999988887766666888
Q ss_pred EEEeCCCCe-eeehhhh-------hhcccCCCce-EEE----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 018935 136 IVIDLPDWQ-VIPAENI-------VASFQGSGKT-VFA----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (348)
Q Consensus 136 vvv~~~DW~-iIPlENl-------iA~~q~~~~~-l~a----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (348)
+++---|-. =+|.|.+ ++.....+.- ++| ...+-.|+--...+..-|+|+|+|..+.
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~ 320 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGK 320 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCc
Confidence 887444432 2345543 3333222222 333 3456688888899999999999999553
Q ss_pred --HHHHHHHHHhhcc
Q 018935 193 --VKAVLALKEYFDG 205 (348)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 321 yPveaV~~m~~I~~~ 335 (465)
T PRK05826 321 YPVEAVEAMARICKG 335 (465)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3566666666653
No 8
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.50 E-value=1.2 Score=39.75 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=71.2
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (348)
-++++.++++.|++.+-++-.+..-.+.+..+....| +..++ -..|.++++++.+... .++.++.
T Consensus 18 ~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~------------~~~iG-ag~v~~~~~~~~a~~~--Ga~~i~~ 82 (190)
T cd00452 18 ALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP------------EALIG-AGTVLTPEQADAAIAA--GAQFIVS 82 (190)
T ss_pred HHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC------------CCEEE-EEeCCCHHHHHHHHHc--CCCEEEc
Confidence 4688999999999999987654332233333322111 12222 2366778887665542 4567765
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 018935 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (348)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (348)
-..| +.++...+..+..++..+.|.+|++.+ ++.|+|-|-+.|.++
T Consensus 83 p~~~------~~~~~~~~~~~~~~i~gv~t~~e~~~A---~~~Gad~i~~~p~~~ 128 (190)
T cd00452 83 PGLD------PEVVKAANRAGIPLLPGVATPTEIMQA---LELGADIVKLFPAEA 128 (190)
T ss_pred CCCC------HHHHHHHHHcCCcEECCcCCHHHHHHH---HHCCCCEEEEcCCcc
Confidence 4443 345555555566788899999998766 578999999987665
No 9
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=90.39 E-value=1.1 Score=42.45 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=69.1
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCC----CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 018935 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (348)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~----DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (348)
..+++...+.++.-.|.++. . ..|+|+|+.. ||. -+++++.+++..+...+..+.+.+. ..+-.+|+.|++
T Consensus 12 ~~~G~~~~~~sp~~~e~~a~-~-G~D~v~iD~EHg~~~~~--~~~~~~~a~~~~g~~~~VRvp~~~~-~~i~r~LD~Ga~ 86 (249)
T TIGR03239 12 TLIGCWSALGNPITTEVLGL-A-GFDWLLLDGEHAPNDVL--TFIPQLMALKGSASAPVVRPPWNEP-VIIKRLLDIGFY 86 (249)
T ss_pred ceEEEEEcCCCcHHHHHHHh-c-CCCEEEEecccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhcCCCC
Confidence 44678888889887666664 3 4899999765 444 4678898888888888888888754 556789999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 018935 185 GIVLK-VEDVKAVLALKEYF 203 (348)
Q Consensus 185 GVvl~-~~d~~~v~~l~~~~ 203 (348)
||+++ .++.+|++++.+..
T Consensus 87 gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 87 NFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred EEEecCcCCHHHHHHHHHHc
Confidence 99986 46788888776654
No 10
>PTZ00300 pyruvate kinase; Provisional
Probab=89.99 E-value=1 Score=46.70 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=92.2
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
+.|++.+.-|++.|+|.|.++- .+++.++++.++. ...|+....+.+|.+++.++.+-.-....|-
T Consensus 147 ekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l-------------~~~~~~~~IiaKIEt~eav~nldeI~~~~Dg 213 (454)
T PTZ00300 147 AKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKAL-------------GAKGGDIMIICKIENHQGVQNIDSIIEESDG 213 (454)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH-------------HhcCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 3578889999999999998874 3355555554441 1134566788899999999888777777888
Q ss_pred EEEeCCC-Ceeeehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 018935 136 IVIDLPD-WQVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (348)
Q Consensus 136 vvv~~~D-W~iIPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (348)
++|---| .-=||.|++-+ .+...+.-+|.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 214 ImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~ 293 (454)
T PTZ00300 214 IMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGK 293 (454)
T ss_pred EEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCC
Confidence 8885544 34577777543 221222223321 234477888888999999999997654
Q ss_pred --HHHHHHHHHhhcc
Q 018935 193 --VKAVLALKEYFDG 205 (348)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 294 yP~eaV~~m~~I~~~ 308 (454)
T PTZ00300 294 YPNEVVQYMARICLE 308 (454)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3567777777643
No 11
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=89.77 E-value=1.3 Score=42.78 Aligned_cols=92 Identities=8% Similarity=0.057 Sum_probs=69.3
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 018935 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (348)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGV 186 (348)
..++..+.+.++.-.|.++. . ..|+++|+.. ....--+++++.+++..+...+..+.+.+. ..+..+|+.|++||
T Consensus 18 ~~~G~~~~~~sp~~~E~~a~-~-GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~GA~GI 94 (267)
T PRK10128 18 VQIGLWLSSTTSYMAEIAAT-S-GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSK-PLIKQVLDIGAQTL 94 (267)
T ss_pred ceEEEEecCCCcHHHHHHHH-c-CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCH-HHHHHHhCCCCCee
Confidence 44678888889887666665 3 4899999765 333345678888888777788888887755 55588999999999
Q ss_pred EEec-CCHHHHHHHHHhh
Q 018935 187 VLKV-EDVKAVLALKEYF 203 (348)
Q Consensus 187 vl~~-~d~~~v~~l~~~~ 203 (348)
++.- ++.++++++.+..
T Consensus 95 ivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 95 LIPMVDTAEQARQVVSAT 112 (267)
T ss_pred EecCcCCHHHHHHHHHhc
Confidence 9964 6678887776654
No 12
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=89.52 E-value=1.4 Score=41.59 Aligned_cols=91 Identities=9% Similarity=0.064 Sum_probs=66.1
Q ss_pred eeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeee---hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 018935 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP---AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (348)
Q Consensus 110 ~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIP---lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGV 186 (348)
.+++.+.+.++.-.|.++. . ..|+++++..+=. +- +++++.+.+..+..++..+++.+.. .+..+|+.|+|||
T Consensus 13 ~~g~~~~~~~p~~~e~~~~-~-g~D~v~iDlEH~~-~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~-~i~~~Ld~Ga~gI 88 (249)
T TIGR02311 13 QIGLWLGLADPYAAEICAG-A-GFDWLLIDGEHAP-NDVRTILSQLQALAPYPSSPVVRPAIGDPV-LIKQLLDIGAQTL 88 (249)
T ss_pred eEEEEEeCCCcHHHHHHHh-c-CCCEEEEeccCCC-CCHHHHHHHHHHHHhcCCCcEEECCCCCHH-HHHHHhCCCCCEE
Confidence 4678888888877666554 3 4899999776432 23 3445555554456888899887765 5688999999999
Q ss_pred EEe-cCCHHHHHHHHHhhc
Q 018935 187 VLK-VEDVKAVLALKEYFD 204 (348)
Q Consensus 187 vl~-~~d~~~v~~l~~~~~ 204 (348)
++. .+++++++++.+.+.
T Consensus 89 ivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 89 LVPMIETAEQAEAAVAATR 107 (249)
T ss_pred EecCcCCHHHHHHHHHHcC
Confidence 996 567899888877664
No 13
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=89.32 E-value=1.6 Score=41.68 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=68.0
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCC----CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 018935 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (348)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~----DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (348)
..+++...+.++.-.|.++. . ..|+|+|+.. ||. -+++++.+++..+...+..+.+.+. ..+..+|+.|++
T Consensus 19 ~~~g~~~~~~sp~~~e~~a~-~-G~D~v~iD~EHg~~~~~--~~~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~Ga~ 93 (256)
T PRK10558 19 VQIGCWSALANPITTEVLGL-A-GFDWLVLDGEHAPNDVS--TFIPQLMALKGSASAPVVRVPTNEP-VIIKRLLDIGFY 93 (256)
T ss_pred ceEEEEEcCCCcHHHHHHHh-c-CCCEEEEccccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhCCCCC
Confidence 44678888888877665554 2 4899999665 444 4678888888888888999988865 455779999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 018935 185 GIVLK-VEDVKAVLALKEYF 203 (348)
Q Consensus 185 GVvl~-~~d~~~v~~l~~~~ 203 (348)
||++. .++.++++++.+..
T Consensus 94 giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 94 NFLIPFVETAEEARRAVAST 113 (256)
T ss_pred eeeecCcCCHHHHHHHHHHc
Confidence 99986 46788888776544
No 14
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=89.29 E-value=2.4 Score=40.39 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=64.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEEE
Q 018935 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vvv 138 (348)
.+.+..+.++|+|+++++..-.+...++-+. .++.|...+.++.- ++.+.+..++......-|++-
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~-------------~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEA-------------AKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHH-------------HHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 5789999999999999997533332222111 12334333333333 345555565554433333332
Q ss_pred e--CCCC--ee-eehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 139 D--LPDW--QV-IPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 139 ~--~~DW--~i-IPlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
. +++= +. -++.+.|+.+.+. +..|+. .+++.++++. +.+.|+|||++-+.
T Consensus 172 ~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~---~~~~GADgvVvGSa 229 (256)
T TIGR00262 172 RAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQ---AIDAGADGVIVGSA 229 (256)
T ss_pred CCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH---HHHcCCCEEEECHH
Confidence 1 1121 12 2456777766543 233443 3567777764 77899999998764
No 15
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=89.13 E-value=1.3 Score=42.81 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=83.3
Q ss_pred chhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCC--------------ccccCCCCeeEEEEEecChhhh
Q 018935 59 SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEG--------------EVYDSGDRRVGSIIEVSTPQEL 123 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g--------------~~~~~~gk~v~~~~~v~~~ed~ 123 (348)
+...++.+|+.|+++||+|- +++|.++++-+-.++.|.-..+- +.+..-+..+.+++.|.+++-+
T Consensus 79 ~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~ 158 (267)
T PRK10128 79 SKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTAL 158 (267)
T ss_pred CHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHH
Confidence 56788999999999999995 56788887777777766322110 1112234567788899998887
Q ss_pred hhhccccC--CCCeEEEeCC----------CCe---ee-ehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 018935 124 QQLQPADG--QAENIVIDLP----------DWQ---VI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (348)
Q Consensus 124 e~~~~~~~--~~~~vvv~~~----------DW~---iI-PlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (348)
+.+..-.+ ..+.+.+-.. +|. +. =++.++++....+..+-..+.+.++++.+ +++|.+=|+
T Consensus 159 ~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~~~~~a~~~---~~~G~~~v~ 235 (267)
T PRK10128 159 DNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVDPDMAQKC---LAWGANFVA 235 (267)
T ss_pred HhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCCCHHHHHHH---HHcCCcEEE
Confidence 77555332 4566665221 122 11 13555555554443444457788877754 689999877
Q ss_pred EecCC
Q 018935 188 LKVED 192 (348)
Q Consensus 188 l~~~d 192 (348)
+..|-
T Consensus 236 ~g~D~ 240 (267)
T PRK10128 236 VGVDT 240 (267)
T ss_pred EChHH
Confidence 77764
No 16
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=88.96 E-value=1.4 Score=42.08 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=60.7
Q ss_pred chhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 018935 59 SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (348)
+...++.+|+.|+++|++|- ++++.++++-+-.+..| .|++ + .. -.
T Consensus 80 ~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP-----------~G~R--------g-------------~~-~~ 126 (256)
T PRK10558 80 EPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPP-----------EGIR--------G-------------VS-VS 126 (256)
T ss_pred CHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCC-----------CCcC--------C-------------CC-cc
Confidence 45666777777777777764 34555555555555444 1110 0 00 00
Q ss_pred EeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 018935 138 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (348)
Q Consensus 138 v~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~-G~DGVvl~~~d~~ 194 (348)
....+|...| ..++.. +..+.+++.+.+++-...+-+++.. |+||+.+-|.|..
T Consensus 127 ~~~~~y~~~~--~y~~~a-n~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs 181 (256)
T PRK10558 127 HRANMFGTVP--DYFAQS-NKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLA 181 (256)
T ss_pred ccccccCChH--HHHHHh-ccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHH
Confidence 1223444333 334433 4567899999999888888888874 8999999998765
No 17
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=88.90 E-value=4.9 Score=38.25 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=68.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~--~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
+.-.+..|.+.|+|.+.+.... .+..+++-+.+ ..-|. -.++++.+.++.+.+... .++++
T Consensus 122 ~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a-------------~~lGl--~~lvevh~~~E~~~A~~~--gadiI 184 (260)
T PRK00278 122 DPYQIYEARAAGADAILLIVAALDDEQLKELLDYA-------------HSLGL--DVLVEVHDEEELERALKL--GAPLI 184 (260)
T ss_pred CHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHH-------------HHcCC--eEEEEeCCHHHHHHHHHc--CCCEE
Confidence 4557899999999998876432 11111111110 11132 367789999988765532 57888
Q ss_pred EEeCCCCeeee-----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHH
Q 018935 137 VIDLPDWQVIP-----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKA 195 (348)
Q Consensus 137 vv~~~DW~iIP-----lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~~ 195 (348)
-++.+|=+.-+ .+.++..+.+ ...+++ ...++++++.++ +.|+|||++-+ +||.+
T Consensus 185 gin~rdl~~~~~d~~~~~~l~~~~p~-~~~vIaegGI~t~ed~~~~~---~~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 185 GINNRNLKTFEVDLETTERLAPLIPS-DRLVVSESGIFTPEDLKRLA---KAGADAVLVGESLMRADDPGA 251 (260)
T ss_pred EECCCCcccccCCHHHHHHHHHhCCC-CCEEEEEeCCCCHHHHHHHH---HcCCCEEEECHHHcCCCCHHH
Confidence 88765543332 2444443321 224555 456788887765 56999998744 56644
No 18
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.81 E-value=1.6 Score=39.59 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=57.2
Q ss_pred hhHHHHHHHhCCcEEEEcC---------cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 018935 60 KQVMTAAVERGWNTFVFLS---------ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~---------~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (348)
.+.+..|.+.|+|.+++.. ...+..+.+.+. | .+-..+.+.++++...+..
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~-----------------g-~~~iiv~v~t~~ea~~a~~-- 141 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEE-----------------Y-NCLLMADISTLEEALNAAK-- 141 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHH-----------------h-CCeEEEECCCHHHHHHHHH--
Confidence 3478999999999777631 112233333222 1 1123446677777544333
Q ss_pred CCCCeEEEeCCCCe------eeehhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 131 GQAENIVIDLPDWQ------VIPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 131 ~~~~~vvv~~~DW~------iIPlENliA~~q~-~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
...+++.+...+.+ ..|--+.+.++.. .+..+++. +++.++++. +++.|+|||++-+.
T Consensus 142 ~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~---~l~~GadgV~vGsa 208 (219)
T cd04729 142 LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAK---ALELGADAVVVGSA 208 (219)
T ss_pred cCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 25788776433221 1121234443322 23344443 445555554 55579999998754
No 19
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=88.25 E-value=0.51 Score=46.75 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=85.9
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
++|++.+.-|++.|+|.|-+.. .+++.+.++.++ +++.|+.+..+.+|.+++.++.+-.-...+|-
T Consensus 176 ekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~-------------l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDg 242 (348)
T PF00224_consen 176 EKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKI-------------LGEKGKDIKIIAKIETKEAVENLDEILEASDG 242 (348)
T ss_dssp HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHH-------------HTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSE
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHH-------------hhhcCcccceeeccccHHHHhhHHHHhhhcCe
Confidence 3689999999999999777653 224455555444 44455667788999999999988877777888
Q ss_pred EEEeCCCCe-eeehhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecC-----
Q 018935 136 IVIDLPDWQ-VIPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVE----- 191 (348)
Q Consensus 136 vvv~~~DW~-iIPlEN-------liA~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~----- 191 (348)
++|.--|-- -||+|. ||+.....+.-+|.. ..+-.|.--...+..-|+|||+|..+
T Consensus 243 imiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~ 322 (348)
T PF00224_consen 243 IMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGK 322 (348)
T ss_dssp EEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSS
T ss_pred EEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCC
Confidence 988543322 244443 444443334444442 23557788888899999999999933
Q ss_pred CH-HHHHHHHHhhc
Q 018935 192 DV-KAVLALKEYFD 204 (348)
Q Consensus 192 d~-~~v~~l~~~~~ 204 (348)
-| +.|+-+.+++.
T Consensus 323 ~p~~~v~~~~~i~~ 336 (348)
T PF00224_consen 323 YPVEAVKTMARIIR 336 (348)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 23 55666666653
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=87.45 E-value=1.6 Score=41.48 Aligned_cols=136 Identities=11% Similarity=0.177 Sum_probs=82.3
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecC-------------CccccCCCCeeEEEEE
Q 018935 53 VWIWT--ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE-------------GEVYDSGDRRVGSIIE 116 (348)
Q Consensus 53 vWiw~--~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~-------------g~~~~~~gk~v~~~~~ 116 (348)
.||-. .+...++.+|+.|+++|++|- ++++.++++-+-.+..|+-..+ .+.+..-+..+..+..
T Consensus 65 ~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~ 144 (249)
T TIGR03239 65 PVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQ 144 (249)
T ss_pred cEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEE
Confidence 45533 367889999999999999995 5677888777766766632211 0122233456678888
Q ss_pred ecChhhhhhhcccc--CCCCeEEEeCCC----------Ceeee----hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh
Q 018935 117 VSTPQELQQLQPAD--GQAENIVIDLPD----------WQVIP----AENIVASFQGSGKTVFAISKTPSEAQIFLEALE 180 (348)
Q Consensus 117 v~~~ed~e~~~~~~--~~~~~vvv~~~D----------W~iIP----lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE 180 (348)
|++++-++.+..-. ...|.+.+-..| +.--+ .+.++.+....+..+-....+.++++.+ ++
T Consensus 145 IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~~~~~~~~~---~~ 221 (249)
T TIGR03239 145 IESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAPVEADARRY---LE 221 (249)
T ss_pred ECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCCCHHHHHHH---HH
Confidence 99988777655443 246677663322 22111 2233333333333344446777666655 68
Q ss_pred cccCeEEEecC
Q 018935 181 QGLGGIVLKVE 191 (348)
Q Consensus 181 ~G~DGVvl~~~ 191 (348)
+|.+=+++..|
T Consensus 222 ~G~~~~~~~~D 232 (249)
T TIGR03239 222 WGATFVAVGSD 232 (249)
T ss_pred cCCCEEEEhHH
Confidence 99987777665
No 21
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.17 E-value=2.1 Score=41.24 Aligned_cols=117 Identities=8% Similarity=0.057 Sum_probs=63.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~~~vv 137 (348)
-.+.+..|-++|+|+++++..-.+...++... .++.|.....++.-++ .+.++.++......=|+|
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~-------------~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISV-------------CNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH-------------HHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 46789999999999999997433333322222 1223433344444444 455555555442222222
Q ss_pred E--eCCCC-eeee--hhhhhhcccCC-C--ceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 138 I--DLPDW-QVIP--AENIVASFQGS-G--KTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 138 v--~~~DW-~iIP--lENliA~~q~~-~--~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
= -.++= +-+| ++++++.+.+. + --+=-.+++.++|+. +.+.|+|||++-+.
T Consensus 175 S~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~---~~~~GADGvVVGSa 233 (263)
T CHL00200 175 STTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQ---IKGWNINGIVIGSA 233 (263)
T ss_pred cCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH---HHhcCCCEEEECHH
Confidence 1 11111 1223 55666655432 1 122234677777775 67899999998764
No 22
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=86.87 E-value=2 Score=38.89 Aligned_cols=42 Identities=26% Similarity=0.204 Sum_probs=34.0
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
.+|..++.|.+||+ ++++.|+|+|+|+.-+|++++++.+.+.
T Consensus 81 ~~I~VEv~~~ee~~---ea~~~g~d~I~lD~~~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 81 KKIEVEVENLEEAE---EALEAGADIIMLDNMSPEDLKEAVEELR 122 (169)
T ss_dssp SEEEEEESSHHHHH---HHHHTT-SEEEEES-CHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHH---HHHHhCCCEEEecCcCHHHHHHHHHHHh
Confidence 35999999999877 5677999999999999999988877653
No 23
>PTZ00066 pyruvate kinase; Provisional
Probab=86.84 E-value=2.4 Score=44.88 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=91.0
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 58 ~~K~~v-T~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
.||+.+ .-|++-|+|.|-... .+++.++++.++ +++.|+.+..+.+|.+++.++.+-.-...+|-
T Consensus 210 kD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~-------------l~~~g~~~~IiAKIE~~~av~NldeIl~~sDG 276 (513)
T PTZ00066 210 KDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQL-------------LGERGRHIKIIPKIENIEGLINFDEILAESDG 276 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCceEEEEECCHHHHHHHHHHHHhcCE
Confidence 467776 899999999654432 224455554444 23345567788999999999998888888899
Q ss_pred EEEeCCCCee-eehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 018935 136 IVIDLPDWQV-IPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (348)
Q Consensus 136 vvv~~~DW~i-IPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (348)
++|.--|--+ ||+|++-. .....+.-+|. ...+-.|+--.+.+..-|+|||+|..+.
T Consensus 277 IMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~ 356 (513)
T PTZ00066 277 IMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGK 356 (513)
T ss_pred EEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCc
Confidence 9996556554 78887532 22222222332 1345578888899999999999997664
Q ss_pred --HHHHHHHHHhhcc
Q 018935 193 --VKAVLALKEYFDG 205 (348)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 357 yPveaV~~m~~I~~~ 371 (513)
T PTZ00066 357 FPVEAVNIMAKICFE 371 (513)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3567777777653
No 24
>PLN02591 tryptophan synthase
Probab=86.63 E-value=2.7 Score=40.30 Aligned_cols=117 Identities=11% Similarity=0.109 Sum_probs=62.7
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV 137 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vv 137 (348)
-.+.+..|-|+|+|++|+++=-.|...++... .++.|-....++.- ++.+.+..++......=|+|
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEETEALRAE-------------AAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH-------------HHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 46789999999999999986222222222221 11122222233322 33445556655543333333
Q ss_pred Ee--CCCCe-eee--hhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 138 ID--LPDWQ-VIP--AENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 138 v~--~~DW~-iIP--lENliA~~q~~-~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
=. .++.+ -+| +++.++.+.+. +..|+ ..+++.++++. +++.|+|||++-+.
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~---~~~~GADGvIVGSa 220 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQ---IAGWGADGVIVGSA 220 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHH---HHhcCCCEEEECHH
Confidence 10 11221 223 45666665542 22233 34677777774 78899999999773
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=86.27 E-value=3.8 Score=37.23 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=60.8
Q ss_pred eEEEEEecChhhhhhhccccCCCCeEEEeCCCCee---------eehhhhhhcc---cCCCceEEEEcCCHHHHHHHHH-
Q 018935 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---------IPAENIVASF---QGSGKTVFAISKTPSEAQIFLE- 177 (348)
Q Consensus 111 v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~i---------IPlENliA~~---q~~~~~l~a~v~~~~eA~~al~- 177 (348)
.+.++...+++-++.+.. ...|+++++..| .+ .=+++++..+ +..+..++..+++.+... ...
T Consensus 2 s~l~vp~~~~~~~~~a~~--~g~D~vilDlEd-~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~-~~~D 77 (221)
T PF03328_consen 2 SGLFVPANSPKMLEKAAA--SGADFVILDLED-GVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPH-IERD 77 (221)
T ss_dssp EEEEEESTSHHHHHHHHT--TCSSEEEEESST-TSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHH-HHHH
T ss_pred EEEEEeCCCHHHHHHHHh--cCCCEEEEeCcc-cCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcch-hhhh
Confidence 356667777777666553 378999998877 33 2234444433 334458999999976532 222
Q ss_pred --HhhcccCeEEEe-cCCHHHHHHHHHhhccc
Q 018935 178 --ALEQGLGGIVLK-VEDVKAVLALKEYFDGR 206 (348)
Q Consensus 178 --~LE~G~DGVvl~-~~d~~~v~~l~~~~~~~ 206 (348)
+|+.|+|||++. .+++++++++.+.+...
T Consensus 78 l~~l~~g~~gI~lP~ves~~~~~~~~~~~~~~ 109 (221)
T PF03328_consen 78 LEALDAGADGIVLPKVESAEDARQAVAALRYP 109 (221)
T ss_dssp HHHHHTTSSEEEETT--SHHHHHHHHHHHSHT
T ss_pred hhhcccCCCeeeccccCcHHHHHHHHHHHhhc
Confidence 999999999997 45788998888877543
No 26
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.85 E-value=4.1 Score=36.96 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=57.7
Q ss_pred chhHHHHHHHhCCcEEEEcCc--------c-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 018935 59 SKQVMTAAVERGWNTFVFLSE--------N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~--------~-~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (348)
..+.+..|.|.|+|.++..-. + .+..+...+. .+.. .+..+.+.++...+..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~----------------~~i~--vi~~v~t~ee~~~a~~- 137 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY----------------PGQL--LMADCSTLEEGLAAQK- 137 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC----------------CCCe--EEEeCCCHHHHHHHHH-
Confidence 456689999999996554321 1 1222222220 1222 3346677777644332
Q ss_pred cCCCCeEEEeCCCCe------eeehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 130 DGQAENIVIDLPDWQ------VIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 130 ~~~~~~vvv~~~DW~------iIPlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
...+++.+...+.+ .-+.-+++.++... +..+++ .++++++++. +++.|+|||++-+.
T Consensus 138 -~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~---~l~~GadgV~iGsa 204 (221)
T PRK01130 138 -LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKK---ALELGAHAVVVGGA 204 (221)
T ss_pred -cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 24788776432221 11223344443322 334444 3456666664 56789999998754
No 27
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.77 E-value=1.9 Score=41.90 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=40.3
Q ss_pred hhhhhcccCC---CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 149 ENIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 149 ENliA~~q~~---~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
++.|.++... ..+|.+++.|.|||+.+ +|.|+|.|+|+.-++++++++.+.+
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A---~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNA---MNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4444444332 25799999999998765 5799999999999999998887764
No 28
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=84.30 E-value=1.3 Score=38.00 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcccCeEEEec---CCH----------HHHHHHHHhhcccccccceeeeeE
Q 018935 169 PSEAQIFLEALEQGLGGIVLKV---EDV----------KAVLALKEYFDGRNEVSNLLSLMK 217 (348)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~---~d~----------~~v~~l~~~~~~~~~~~~~l~L~~ 217 (348)
-=+....+.+|++|+|||++.. +|. .-+..+++++++...+.+++.+..
T Consensus 39 rv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~ 100 (124)
T PF02662_consen 39 RVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYW 100 (124)
T ss_pred ccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEE
Confidence 3467889999999999999943 331 224555666665555555555543
No 29
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=83.80 E-value=9.8 Score=37.90 Aligned_cols=125 Identities=12% Similarity=0.103 Sum_probs=72.1
Q ss_pred CCcEEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcc
Q 018935 49 KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQP 128 (348)
Q Consensus 49 ~~K~vWiw~~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~ 128 (348)
....=|.|--...-+.+-.++++|-+++++.+. ..+.+.. ++ ..=..++..|+.+-.|+.|..-|+-..-.
T Consensus 43 ~~~~~W~~ql~~~~~~~i~~~~~d~vVID~~~~--g~~~~~f---s~---~~i~~Lk~~g~~viaYlSvGe~E~~R~y~- 113 (315)
T TIGR01370 43 SAVQHWGYQLQNADLNEIHTSPFELVVIDYSKD--GTEDGTY---SP---EEIVRAAAAGRWPIAYLSIGAAEDYRFYW- 113 (315)
T ss_pred cccceEEEEeCCCChhhhhccCCCEEEEccccc--cCcccCC---CH---HHHHHHHhCCcEEEEEEEchhccccchhh-
Confidence 344467776443334444588999999987531 0011100 00 00012345688888998988777611111
Q ss_pred ccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHH----HHHhhcccCeEEEecCCH
Q 018935 129 ADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIF----LEALEQGLGGIVLKVEDV 193 (348)
Q Consensus 129 ~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~a----l~~LE~G~DGVvl~~~d~ 193 (348)
.++|+.+|-+-++..-.+=.+.-+.-..+++=-..+ -.++++|.|||.|++=|.
T Consensus 114 -----------~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 114 -----------QKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred -----------hhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHcCCCeEeeccchh
Confidence 226777888877776555445556666665433333 345689999999987554
No 30
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=83.55 E-value=5.9 Score=35.97 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=35.2
Q ss_pred CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEE
Q 018935 278 GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (348)
Q Consensus 278 GaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeA 332 (348)
|-..=.+..-|.-|+||.+++.||+|.+-...|+.-.. + .+|+++|-+
T Consensus 49 ~~l~~~v~~~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~-----~--~~~~vliAg 96 (233)
T cd06220 49 GPNSITVKKVGEATSALHDLKEGDKLGIRGPYGNGFEL-----V--GGKVLLIGG 96 (233)
T ss_pred CeEEEEEEecChHHHHHHhcCCCCEEEEECcCCCCccC-----C--CCeEEEEec
Confidence 33444455568889999999999999998898873211 2 689998853
No 31
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=83.46 E-value=13 Score=33.44 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=65.0
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCcc---h----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh
Q 018935 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSEN---Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (348)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~v~~~~~---~----e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed 122 (348)
.+|+.- .+-+.+..+++.|+|.+++.... . +.++.+++-..+-.+-+.++......+.. ..-.++.+
T Consensus 75 pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~----~~~~~~~~ 150 (234)
T cd04732 75 PVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLE----TSEVSLEE 150 (234)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCee----ecCCCHHH
Confidence 356644 57888999999999999987632 2 23334443223333444444433221110 00112222
Q ss_pred hhhhccccCCCCeEEEeCCC----Ceeeehhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 123 LQQLQPADGQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~D----W~iIPlENliA~~-q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
+-...... .++.+++...+ -+-+++| ++.++ +..+..+++ .+.+.++++.++. .|+|||++-+.
T Consensus 151 ~~~~~~~~-ga~~iii~~~~~~g~~~g~~~~-~i~~i~~~~~ipvi~~GGi~~~~di~~~~~---~Ga~gv~vg~~ 221 (234)
T cd04732 151 LAKRFEEL-GVKAIIYTDISRDGTLSGPNFE-LYKELAAATGIPVIASGGVSSLDDIKALKE---LGVAGVIVGKA 221 (234)
T ss_pred HHHHHHHc-CCCEEEEEeecCCCccCCCCHH-HHHHHHHhcCCCEEEecCCCCHHHHHHHHH---CCCCEEEEeHH
Confidence 22211111 35666664321 1112222 22222 122334444 4688888887665 49999998653
No 32
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=82.87 E-value=6.8 Score=37.20 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=58.4
Q ss_pred eEEEEEEEEEcCCc-ceEEEeecC-------CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCcee
Q 018935 216 MKATVTRVDVAGMG-DRVCVDLCS-------LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHA 282 (348)
Q Consensus 216 ~~atVt~V~~vGmG-dRVCVDtcs-------ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNA-----GaVHa 282 (348)
-+++|++++++.-. ...++..-. -++||+=+.| -.... ..|||-+-. |-+.=
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l---------~~~~~------~~~pySias~p~~~~~l~l 70 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQV---------TIPGV------GEVPISICSSPTRKGFFEL 70 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEE---------EcCCC------CceeeEecCCCCCCCEEEE
Confidence 35888888888765 455665321 1456653332 11111 124555422 33444
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 283 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 283 Yv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|..-|.-|+||..|+.||+|.+-...|+.-. .- ..+.+|+++|=
T Consensus 71 ~Ik~~G~~S~~L~~l~~Gd~v~v~gP~G~~f~--~~--~~~~~~~llIA 115 (289)
T PRK08345 71 CIRRAGRVTTVIHRLKEGDIVGVRGPYGNGFP--VD--EMEGMDLLLIA 115 (289)
T ss_pred EEEeCChHHHHHHhCCCCCEEEEeCCCCCCCC--cc--cccCceEEEEe
Confidence 45556889999999999999999999886321 10 12457999874
No 33
>PRK05826 pyruvate kinase; Provisional
Probab=82.27 E-value=11 Score=39.51 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 018935 169 PSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (348)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~-~~d~~~v~~l~~~~~~ 205 (348)
..|.+....+|+.|+|||.++ .++.+++++++++++.
T Consensus 173 e~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~ 210 (465)
T PRK05826 173 EKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLRE 210 (465)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 567777788999999999998 7889999999999864
No 34
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=81.93 E-value=19 Score=32.66 Aligned_cols=115 Identities=19% Similarity=0.147 Sum_probs=64.8
Q ss_pred hhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEE
Q 018935 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vv 137 (348)
++++.++.+.|+.++.+.. +..+.+++...+-.+.... +|.. +..+ .+. ..++.+.+. .. .++.++
T Consensus 26 ~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~~~Pil~~~~-~d~~-----~~~~----~~~~~~~~v~~a~-~a-Gad~I~ 93 (221)
T PRK01130 26 AAMALAAVQGGAVGIRANGVEDIKAIRAVVDVPIIGIIK-RDYP-----DSEV----YITPTLKEVDALA-AA-GADIIA 93 (221)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEe-cCCC-----CCCc----eECCCHHHHHHHH-Hc-CCCEEE
Confidence 7788888999999988754 1223333333332221111 1100 1111 111 233333332 22 567777
Q ss_pred EeCCC---CeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 138 IDLPD---WQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 138 v~~~D---W~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
+.... ..-..++.++..++. .+-.+++.+.+.+|++ .+.+.|+|-+.+.
T Consensus 94 ~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~---~a~~~G~d~i~~~ 146 (221)
T PRK01130 94 LDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGL---AAQKLGFDFIGTT 146 (221)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHH---HHHHcCCCEEEcC
Confidence 74332 111456678888877 6778999999999985 5678899988763
No 35
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=81.92 E-value=9.3 Score=36.21 Aligned_cols=140 Identities=12% Similarity=0.179 Sum_probs=83.9
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcCcch-----hhhhhcccee--eeee-eeecCC---ccc--cCCCCeeEEEEEec
Q 018935 52 RVWIWTESKQVMTAAVERGWNTFVFLSENQ-----QLAIDWSTIA--LLDP-LFIKEG---EVY--DSGDRRVGSIIEVS 118 (348)
Q Consensus 52 ~vWiw~~~K~~vT~ALEsG~~~~v~~~~~~-----e~~~~l~~i~--~i~~-l~~~~g---~~~--~~~gk~v~~~~~v~ 118 (348)
-.|++..+-.++..+..+|+|.++++-||. ++..-+..+. -..+ +-++.. .+. -.-|..-..+=.|.
T Consensus 15 g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~ 94 (249)
T TIGR02311 15 GLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIE 94 (249)
T ss_pred EEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcC
Confidence 389988899999999999999999998871 2221111110 0011 111111 111 12233333444788
Q ss_pred ChhhhhhhccccCCC-------CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEEec
Q 018935 119 TPQELQQLQPADGQA-------ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLKV 190 (348)
Q Consensus 119 ~~ed~e~~~~~~~~~-------~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE-~G~DGVvl~~ 190 (348)
++|+.+.+....... .+-.....+|...| +-++. .+..+.+++.+.+++-.+-+-+++. .|+||+.+-|
T Consensus 95 s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~--~y~~~-~n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~ 171 (249)
T TIGR02311 95 TAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIP--DYLQQ-ADEEICVLLQVETREALDNLEEIAAVEGVDGVFIGP 171 (249)
T ss_pred CHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChH--HHHHH-hhhceEEEEEecCHHHHHHHHHHHCCCCCcEEEECH
Confidence 999988877665311 11112344555433 33333 2446789999999988877777774 4899999998
Q ss_pred CCHH
Q 018935 191 EDVK 194 (348)
Q Consensus 191 ~d~~ 194 (348)
.|..
T Consensus 172 ~DLs 175 (249)
T TIGR02311 172 ADLA 175 (249)
T ss_pred HHHH
Confidence 8655
No 36
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=81.62 E-value=7 Score=39.07 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=76.0
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---
Q 018935 56 WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (348)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~--- 132 (348)
|.-+.++...|-|-|.-+++.. -+.|...... ..++ .++..++.-+- .++++.+++..+...
T Consensus 47 t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~--r~~~-----------~~~l~v~~~vg-~~~~~~~~~~~Lv~ag~~ 111 (326)
T PRK05458 47 TIIDEKIAEWLAENGYFYIMHR-FDPEARIPFI--KDMH-----------EQGLIASISVG-VKDDEYDFVDQLAAEGLT 111 (326)
T ss_pred chhHHHHHHHHHHcCCEEEEec-CCHHHHHHHH--Hhcc-----------ccccEEEEEec-CCHHHHHHHHHHHhcCCC
Confidence 3457999999999999998876 1233222111 1111 12332222222 256776776666642
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 133 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~--~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
.|.++|+..+--...+.++|+.+...- .-|++ .+.|.++|+.+ .+.|+|++.+.
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l---~~aGad~i~vg 168 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVREL---ENAGADATKVG 168 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHH---HHcCcCEEEEC
Confidence 499999999988888999999887653 34666 58888888665 46899998855
No 37
>PLN02762 pyruvate kinase complex alpha subunit
Probab=81.60 E-value=5.3 Score=42.31 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=91.2
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCC--CeeEEEEEecChhhhhhhccccCCCC
Q 018935 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD--RRVGSIIEVSTPQELQQLQPADGQAE 134 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~g--k~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (348)
.||+.+.-|++-|+|.|-+.. .+++.++++.++ +++.| ..+..+.+|.+++.++.+..-...+|
T Consensus 204 kD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~-------------l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sD 270 (509)
T PLN02762 204 KDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSY-------------IAARSRDSDIGVIAKIESLDSLKNLEEIIRASD 270 (509)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcC
Confidence 578889999999999655442 224444444444 22222 24568889999999999888788889
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 018935 135 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (348)
Q Consensus 135 ~vvv~~~DW~i-IPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d--- 192 (348)
-++|.--|--+ ||+|++-. .....+.-+|.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 271 giMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G 350 (509)
T PLN02762 271 GAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG 350 (509)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCC
Confidence 99996666554 88888643 221222233331 345578888888999999999999664
Q ss_pred ---HHHHHHHHHhhcc
Q 018935 193 ---VKAVLALKEYFDG 205 (348)
Q Consensus 193 ---~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 351 ~yPveaV~~m~~I~~~ 366 (509)
T PLN02762 351 LYPEKALSVLRSVSLR 366 (509)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3667777776643
No 38
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=81.02 E-value=3.6 Score=32.16 Aligned_cols=88 Identities=25% Similarity=0.282 Sum_probs=49.9
Q ss_pred EEEEEEEEEcCCcc---eEEEeec---CCCCCCceEEEeccCceEEEEeeccccCCC-CCCCCeeeecCCceeEEEe-cC
Q 018935 217 KATVTRVDVAGMGD---RVCVDLC---SLMRPGEGLLVGSFARGLFLVHSECLESNY-IASRPFRVNAGPVHAYVLV-PG 288 (348)
Q Consensus 217 ~atVt~V~~vGmGd---RVCVDtc---sll~~GEGmLVGS~S~glFLVhsEt~es~Y-va~RPFRVNAGaVHaYv~~-pg 288 (348)
+|+|++++.+.-.= |...+.. --+.+|+=+.|.-.. ..+....|| +++.| =+.|-++=.|.. |+
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~------~~~~~~R~yS~~s~~--~~~~~~~~~ik~~~~ 72 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPI------NGKQVSRPYSPASSP--DDKGYLEFAIKRYPN 72 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEE------TTEEEEEEEEBCSST--TSSSEEEEEEEECTT
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEcc------CCcceecceeEeeec--CCCCcEEEEEEeccC
Confidence 57888888887432 3333322 235666654443221 112223444 23333 133445545554 34
Q ss_pred C-ceeeeeeccCCCeEEEEcCCCCe
Q 018935 289 G-KTCYLSELKSGKEVIVVDQKGRQ 312 (348)
Q Consensus 289 g-kT~YLSEL~aG~eVLvVd~~G~t 312 (348)
| -|+||.+|+.||+|.+-...|+.
T Consensus 73 G~~S~~L~~l~~Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 73 GRVSRYLHQLKPGDEVEIRGPYGNF 97 (99)
T ss_dssp SHHHHHHHTSCTTSEEEEEEEESSE
T ss_pred CHHHHHHHhCCCCCEEEEEEccccc
Confidence 4 68899999999999998888864
No 39
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.62 E-value=9.9 Score=34.26 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=58.4
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 58 ESKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~-~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
...+.+..+.+.|+|.|.++... .+..+.+.+ .+.. ....+.+.++.+.+.. ...+++
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~-----------------~~i~--~i~~v~~~~~~~~~~~--~gad~i 126 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA-----------------AGIK--VIPTVTSVEEARKAEA--AGADAL 126 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH-----------------cCCE--EEEeCCCHHHHHHHHH--cCCCEE
Confidence 56788999999999999987532 222222221 1222 2334556666555433 247888
Q ss_pred EEeCCC------Ceeeehhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 137 VIDLPD------WQVIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 137 vv~~~D------W~iIPlENliA~~q-~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
++.... ....+...++.++. ..+..+++ -+++.++++ ++++.|+|||++.+.
T Consensus 127 ~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~---~~l~~GadgV~vgS~ 187 (236)
T cd04730 127 VAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIA---AALALGADGVQMGTR 187 (236)
T ss_pred EEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHH---HHHHcCCcEEEEchh
Confidence 874421 11012223333322 11233443 344445554 445689999999754
No 40
>PLN02623 pyruvate kinase
Probab=80.36 E-value=5.1 Score=43.14 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=89.2
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
.|++.+.-|+|-|+|.|-+.- .+++.++++.+. +...|..+..+.+|.+++.++.+..-+...|-+
T Consensus 279 kD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~-------------l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgI 345 (581)
T PLN02623 279 KDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDY-------------LKSCNADIHVIVKIESADSIPNLHSIITASDGA 345 (581)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcceEEEEECCHHHHHhHHHHHHhCCEE
Confidence 578889999999999655442 224445544444 222345567888999999988877766688888
Q ss_pred EEeCCCC-eeeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 018935 137 VIDLPDW-QVIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (348)
Q Consensus 137 vv~~~DW-~iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (348)
+|---|- -=||+|.+.+ +....+.-++. ...+-.|+.-+..+++.|+|+|+|..+.
T Consensus 346 mIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~y 425 (581)
T PLN02623 346 MVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 425 (581)
T ss_pred EECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcC
Confidence 8844443 3456665433 33223333332 2233468888999999999999999763
Q ss_pred -HHHHHHHHHhhcc
Q 018935 193 -VKAVLALKEYFDG 205 (348)
Q Consensus 193 -~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 426 PveaV~~m~~I~~~ 439 (581)
T PLN02623 426 PLKAVKVMHTVALR 439 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 3667777777654
No 41
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.07 E-value=3.4 Score=40.54 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=36.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+++++++..+++.
T Consensus 195 ~kIeVEv~tleea~ea---~~~gaDiI~LDn~s~e~l~~av~~~~ 236 (281)
T PRK06106 195 VKIEVEVDTLDQLEEA---LELGVDAVLLDNMTPDTLREAVAIVA 236 (281)
T ss_pred CcEEEEeCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHhC
Confidence 5799999999998765 58999999999999999988777653
No 42
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.80 E-value=3.8 Score=40.43 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=36.5
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
.+|..+|.|.+||+.++ +.|+|.|+|+.=+|+++++..+++.
T Consensus 198 ~kIeVEv~tleea~~a~---~agaDiImLDnmspe~l~~av~~~~ 239 (290)
T PRK06559 198 KMVEVEVESLAAAEEAA---AAGADIIMLDNMSLEQIEQAITLIA 239 (290)
T ss_pred CeEEEECCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhc
Confidence 68999999999987654 7899999999999999988777653
No 43
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=79.48 E-value=4.4 Score=42.04 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=81.7
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCC-CeeEEEEEecChhhhhhhccccCCCCe
Q 018935 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~g-k~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
+|++-+..+++.|+|.|.++. ++++.++.+.+. +...+ ..+..+..|.+++-++.+..-+...|-
T Consensus 172 kD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~-------------l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dg 238 (473)
T TIGR01064 172 KDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREV-------------LGEKGAKDVKIIAKIENQEGVDNIDEIAEASDG 238 (473)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCceEEEEECCHHHHHhHHHHHhhCCc
Confidence 478889999999999999986 334444433332 11112 235677889999988887665555566
Q ss_pred EEEeCCCCee-eehh-------hhhhcccCCCceEEEEc-------C----CHHHHHHHHHHhhcccCeEEEecCC----
Q 018935 136 IVIDLPDWQV-IPAE-------NIVASFQGSGKTVFAIS-------K----TPSEAQIFLEALEQGLGGIVLKVED---- 192 (348)
Q Consensus 136 vvv~~~DW~i-IPlE-------NliA~~q~~~~~l~a~v-------~----~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (348)
+++-..|-.. +|.| .++.++...+..++... . +-.|+.-+..+.+.|+|+|+|..+.
T Consensus 239 i~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~ 318 (473)
T TIGR01064 239 IMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGK 318 (473)
T ss_pred EEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCC
Confidence 6664333211 1222 22222222222333222 2 2347777888899999999997663
Q ss_pred --HHHHHHHHHhhcc
Q 018935 193 --VKAVLALKEYFDG 205 (348)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 319 yP~~~v~~m~~I~~~ 333 (473)
T TIGR01064 319 YPVEAVKMMAKIAKE 333 (473)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3667777777754
No 44
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=79.48 E-value=25 Score=33.18 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=71.4
Q ss_pred HHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEE-------------Eecc-CceEEEEee
Q 018935 195 AVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLL-------------VGSF-ARGLFLVHS 260 (348)
Q Consensus 195 ~v~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmL-------------VGS~-S~glFLVhs 260 (348)
|-.+|++.+... .....++..|+|..-.+-+..+.+-||--+.-.--.||. |+.+ |+-+.+.+.
T Consensus 101 en~~L~~lL~~~--~~~~~~~i~A~Vi~~~~~~~~~~i~Id~G~~~Gv~~g~~Vv~~~GlVG~V~~v~~~~s~V~li~d~ 178 (276)
T PRK13922 101 ENARLRELLNLK--ESLDYQFITARVISRSPDPWSQQVTIDKGSNDGVKKGMPVIDPGGLVGRVIEVSPNTSRVLLLTDP 178 (276)
T ss_pred HHHHHHHHhcCc--ccCCCceEEEEEEEeCCCCceeEEEEccCcccCCCCCCceEcCCCCeEEEEEECCCeeEEEEEEcC
Confidence 445566665432 122268999999999999999999999877654444444 4443 444444444
Q ss_pred ccccCCCCCCCCeeeecCCceeEEEecCC----ceeee---eeccCCCeEEEEcCCCCeeE-EeeeeEE
Q 018935 261 ECLESNYIASRPFRVNAGPVHAYVLVPGG----KTCYL---SELKSGKEVIVVDQKGRQRT-AVVGRVK 321 (348)
Q Consensus 261 Et~es~Yva~RPFRVNAGaVHaYv~~pgg----kT~YL---SEL~aG~eVLvVd~~G~tR~-~~VGRvK 321 (348)
++. =|.++.--.....+.--|+ .-+|+ .+++.||.|..-+.+|.-=. ..||+|+
T Consensus 179 ~~~-------v~v~i~~~~~~gi~~G~g~~~~l~l~~i~~~~~i~~GD~VvTSGl~g~fP~Gi~VG~V~ 240 (276)
T PRK13922 179 NSR-------VPVQVGRNGIRGILSGNGSGDNLKLEFIPRSADIKVGDLVVTSGLGGIFPAGLPVGKVT 240 (276)
T ss_pred CCc-------eEEEEEcCCceEEEEecCCCCceEEEecCCCCCCCCCCEEEECCCCCcCCCCCEEEEEE
Confidence 331 2444421112222222121 44566 67999999999998875443 7888886
No 45
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=79.47 E-value=8.1 Score=31.46 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=44.3
Q ss_pred EEEecCCceeeeeeccC--CCeEEEEcCCCCeeEEeeeeE-Ee-eccceeEEEEEECCEeeee
Q 018935 283 YVLVPGGKTCYLSELKS--GKEVIVVDQKGRQRTAVVGRV-KI-ESRPLILVEAKVIKLFTAS 341 (348)
Q Consensus 283 Yv~~pggkT~YLSEL~a--G~eVLvVd~~G~tR~~~VGRv-KI-E~RPLlLIeAe~~G~~~~~ 341 (348)
=|.+++++..-+.||.. |++|+..|..|+.+...|-.+ +- ...|++-|..+.+..+.++
T Consensus 7 ~V~~~d~~~~~i~~l~~~~g~~V~~~d~~~~~~~~~v~~~~~~~~~~~~~~i~~~~g~~l~~T 69 (136)
T cd00081 7 LVLLEDGGRKKIEELVEKKGDKVLALDETGKLVFSKVLKVLRRDYEKKFYKIKTESGREITLT 69 (136)
T ss_pred EEEeccCcEEEhHHhhhccCCEEEEECCCCCEEEEEeeEEEEEcCCCcEEEEEECCCcEEEEc
Confidence 36788888899999999 999999999776655444322 22 5678888888877777654
No 46
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=79.35 E-value=2 Score=41.88 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=34.2
Q ss_pred eehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 146 IPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 146 IPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
.|.+.++..++..+.+++..|.|+++|+. +++.|+|+|++.-.
T Consensus 123 ~p~~~~i~~l~~~gi~v~~~v~s~~~A~~---a~~~G~D~iv~qG~ 165 (330)
T PF03060_consen 123 LPPPEVIERLHAAGIKVIPQVTSVREARK---AAKAGADAIVAQGP 165 (330)
T ss_dssp SC-HHHHHHHHHTT-EEEEEESSHHHHHH---HHHTT-SEEEEE-T
T ss_pred cchHHHHHHHHHcCCccccccCCHHHHHH---hhhcCCCEEEEecc
Confidence 47788889999999999999999999986 57789999999853
No 47
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=78.96 E-value=5.5 Score=38.87 Aligned_cols=113 Identities=11% Similarity=0.124 Sum_probs=68.0
Q ss_pred eCchhHHHHHHHhCCcEEEEcCc-c-hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc-CCC
Q 018935 57 TESKQVMTAAVERGWNTFVFLSE-N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD-GQA 133 (348)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~v~~~~-~-~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~-~~~ 133 (348)
..+.+++.+.-+.|.=+++-... + .++.+++..+... .++++++-+....+...+.+.... .+.
T Consensus 22 ~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~-------------t~~pfgvn~~~~~~~~~~~~~~~~~~~v 88 (307)
T TIGR03151 22 VATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKEL-------------TDKPFGVNIMLLSPFVDELVDLVIEEKV 88 (307)
T ss_pred CCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHh-------------cCCCcEEeeecCCCCHHHHHHHHHhCCC
Confidence 34688999999999888875321 1 1222333333211 134445444333343333333222 245
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
+.+.+.+. .|-+ ++.+++..+.++++.+.+.++|+.+. +.|+|+|++..
T Consensus 89 ~~v~~~~g----~p~~-~i~~lk~~g~~v~~~v~s~~~a~~a~---~~GaD~Ivv~g 137 (307)
T TIGR03151 89 PVVTTGAG----NPGK-YIPRLKENGVKVIPVVASVALAKRME---KAGADAVIAEG 137 (307)
T ss_pred CEEEEcCC----CcHH-HHHHHHHcCCEEEEEcCCHHHHHHHH---HcCCCEEEEEC
Confidence 55555332 3544 88888888889999999999986554 66999999855
No 48
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=78.93 E-value=6.3 Score=32.66 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=53.5
Q ss_pred ccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEe
Q 018935 207 NEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLV 286 (348)
Q Consensus 207 ~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~ 286 (348)
.......++..++|+++.|+ +|-+|-- +.=+.+ ||.-+|. =..|. |=|.++-...|....
T Consensus 11 ~~~~~p~~i~~G~V~s~~PL----~I~i~~~-liL~~~-----------~L~i~~~-l~~~~--~~~~~~~~~~~~~~~- 70 (100)
T PF10844_consen 11 VEASNPVDIVIGTVVSVPPL----KIKIDQK-LILDKD-----------FLIIPEL-LKDYT--RDITIEHNSETDNIT- 70 (100)
T ss_pred HhcCCCceeEEEEEEecccE----EEEECCe-EEEchH-----------HEEeehh-ccceE--EEEEEecccccccee-
Confidence 35666778899999999993 4444431 111111 2333332 12221 122232222222111
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 018935 287 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (348)
Q Consensus 287 pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRv 320 (348)
-.|-..|+.||+|++.-.+|..+=.++.||
T Consensus 71 ----i~~~~~Lk~GD~V~ll~~~~gQ~yiVlDkV 100 (100)
T PF10844_consen 71 ----ITFTDGLKVGDKVLLLRVQGGQKYIVLDKV 100 (100)
T ss_pred ----EEEecCCcCCCEEEEEEecCCCEEEEEEeC
Confidence 678899999999999999999998888875
No 49
>PRK05713 hypothetical protein; Provisional
Probab=78.50 E-value=19 Score=34.53 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=28.3
Q ss_pred ecCCc-eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 286 VPGGK-TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 286 ~pggk-T~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|+|+ |.||.+|+.||+|.+-...|..- .. +-....||+++|=
T Consensus 156 ~~~G~~s~~l~~l~~Gd~v~l~~p~gg~~--~~-~~~~~~~~~vlIA 199 (312)
T PRK05713 156 SRPGAFCDAARQLQVGDLLRLGELRGGAL--HY-DPDWQERPLWLLA 199 (312)
T ss_pred cCCCccchhhhcCCCCCEEEEccCCCCce--Ee-cCCCCCCcEEEEe
Confidence 36665 88999999999999766665210 00 1112458999883
No 50
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=78.13 E-value=8.1 Score=29.50 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=51.0
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 018935 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (348)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (348)
.+.+.++.-.... ....+.++++..-.. .-...++..++. .+..++....+. +......+++.|++|.+.+|-++
T Consensus 28 ~~~~~~~~~~~~~-~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~~-~~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 28 TASSGEEALELLK-KHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDED-DSDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp EESSHHHHHHHHH-HSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESST-SHHHHHHHHHTTESEEEESSSSH
T ss_pred EECCHHHHHHHhc-ccCceEEEEEeeecc-ccccccccccccccccccEEEecCCC-CHHHHHHHHHCCCCEEEECCCCH
Confidence 4466665444332 235788888755333 333344444333 456777777444 46667778899999999999999
Q ss_pred HHHHH
Q 018935 194 KAVLA 198 (348)
Q Consensus 194 ~~v~~ 198 (348)
+++.+
T Consensus 105 ~~l~~ 109 (112)
T PF00072_consen 105 EELRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 51
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=77.76 E-value=11 Score=37.77 Aligned_cols=114 Identities=12% Similarity=0.070 Sum_probs=68.2
Q ss_pred eCchhHHHHHHHhCCcEEEEcCcchhh-hhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---
Q 018935 57 TESKQVMTAAVERGWNTFVFLSENQQL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (348)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~v~~~~~~e~-~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~--- 132 (348)
.-+.++...|-|-|.-+++..- +.|. .+...+. +.++..++ ...=.+++|++++......
T Consensus 45 ~in~~LA~~a~~~G~~~i~hK~-~~E~~~sfvrk~--------------k~~~L~v~-~SvG~t~e~~~r~~~lv~a~~~ 108 (321)
T TIGR01306 45 IIDEKLAEQLAENGYFYIMHRF-DEESRIPFIKDM--------------QERGLFAS-ISVGVKACEYEFVTQLAEEALT 108 (321)
T ss_pred hhhHHHHHHHHHcCCEEEEecC-CHHHHHHHHHhc--------------cccccEEE-EEcCCCHHHHHHHHHHHhcCCC
Confidence 4579999999999999999872 2222 2221111 11122221 2122467777887776653
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCC--ceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 018935 133 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~--~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
.|+++++...=--..+-+.|..+.+.- .-+++- +.+.+.|+.+ ++.|+|||.+.
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l---~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVREL---ENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHH---HHcCcCEEEEC
Confidence 599999876444455555555554332 224444 6666666655 57899999877
No 52
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.66 E-value=4.5 Score=39.55 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=44.1
Q ss_pred ehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 018935 147 PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 147 PlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
.+++-|+++... ..+|..+|.+.+||+.+ ++.|+|.|+|+.-+|+++++..+.+.
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv~~leea~~a---~~agaDiI~LDn~~~e~l~~~v~~l~ 224 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEVESLEDALKA---AKAGADIIMLDNMTPEEIREVIEALK 224 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHH
Confidence 466666665443 35799999999998765 57999999999999999998887664
No 53
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.23 E-value=5.2 Score=39.42 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=41.1
Q ss_pred hhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 018935 148 AENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 148 lENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
+++-+.++... ..+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 186 i~~ai~~~r~~~~~~kIeVEv~tl~ea~ea---l~~gaDiI~LDnm~~e~vk~av~~~~ 241 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEVEVDSLEQLDEV---LAEGAELVLLDNFPVWQTQEAVQRRD 241 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 44444444321 25799999999998766 78999999999999999988776553
No 54
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=76.92 E-value=15 Score=34.43 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=39.3
Q ss_pred CCeeeec---CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 271 RPFRVNA---GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 271 RPFRVNA---GaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|||.++. |.+.=+|..-|.-|.||..|+.||+|.+-...|+.= ... ....||+++|=
T Consensus 49 ~pySi~~~~~~~~~~~Ik~~G~~S~~L~~l~~Gd~v~v~gP~G~~f--~~~--~~~~~~~llIA 108 (263)
T PRK08221 49 APISVSDYGDGYIDLTIRRVGKVTDEIFNLKEGDKLFLRGPYGNGF--PVD--TYKGKELIVVA 108 (263)
T ss_pred ceeeccCCCCCEEEEEEEeCCchhhHHHhCCCCCEEEEECCCCCCc--ccC--ccCCccEEEEc
Confidence 7777765 333344555577899999999999999988888621 111 12357999874
No 55
>PLN02461 Probable pyruvate kinase
Probab=76.48 E-value=7.2 Score=41.34 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=90.8
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 58 ~~K~~v-T~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
.||+.+ .-|++-|+|.+-+.. .+++.++++.++ +...|+.+..+.+|.+++.++.+..-...+|-
T Consensus 194 kD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~-------------l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDg 260 (511)
T PLN02461 194 KDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKV-------------LGEHAKSILLISKVENQEGLDNFDDILAESDA 260 (511)
T ss_pred HHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCCCEEEEECCHHHHHHHHHHHHhcCE
Confidence 467777 789999999655442 224444444444 22335566788899999999998888888899
Q ss_pred EEEeCCCCe-eeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 018935 136 IVIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (348)
Q Consensus 136 vvv~~~DW~-iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (348)
++|.--|=- =||+|.+-. .....+.-+|. ...+-.|+--...+..-|+|||+|..+.
T Consensus 261 IMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~ 340 (511)
T PLN02461 261 FMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGA 340 (511)
T ss_pred EEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCC
Confidence 998655544 377776632 22222223332 1345578888899999999999999553
Q ss_pred --HHHHHHHHHhhcc
Q 018935 193 --VKAVLALKEYFDG 205 (348)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (348)
.+.|+.+.+++.+
T Consensus 341 yPveaV~~m~~I~~~ 355 (511)
T PLN02461 341 YPELAVKTMARICRE 355 (511)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3667777777653
No 56
>PRK06739 pyruvate kinase; Validated
Probab=76.34 E-value=8.4 Score=38.96 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=89.1
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
+|++.+.-|++.|+|.|-... .+++.+.++.++ +.+. +..+..+.+|.+++.++.+..-...+|-
T Consensus 166 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDg 232 (352)
T PRK06739 166 KDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDF-------------IQQYKETSPNLIAKIETMEAIENFQDICKEADG 232 (352)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCE
Confidence 578889999999999765542 224445544444 1222 2345578899999999988887778899
Q ss_pred EEEeCCCCe-eeehhhhh-------hcccCCCceEE-E----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 018935 136 IVIDLPDWQ-VIPAENIV-------ASFQGSGKTVF-A----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (348)
Q Consensus 136 vvv~~~DW~-iIPlENli-------A~~q~~~~~l~-a----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (348)
++|.--|-- -||+|.+- ......+.-+| | ...+-.|+--.+.+..-|+|||+|..+.
T Consensus 233 imVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 233 IMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGE 312 (352)
T ss_pred EEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCC
Confidence 998655544 37777653 22222222233 2 2345578888899999999999999553
Q ss_pred --HHHHHHHHHhhc
Q 018935 193 --VKAVLALKEYFD 204 (348)
Q Consensus 193 --~~~v~~l~~~~~ 204 (348)
++.|+-+++++.
T Consensus 313 yPveaV~~m~~I~~ 326 (352)
T PRK06739 313 HPIESVSTLRLVSE 326 (352)
T ss_pred CHHHHHHHHHHHHH
Confidence 356666666664
No 57
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.21 E-value=5 Score=39.39 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=36.9
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++...++.
T Consensus 194 ~kIeVEv~slee~~ea---~~~gaDiImLDn~s~e~l~~av~~~~ 235 (281)
T PRK06543 194 THVEVEVDRLDQIEPV---LAAGVDTIMLDNFSLDDLREGVELVD 235 (281)
T ss_pred CcEEEEeCCHHHHHHH---HhcCCCEEEECCCCHHHHHHHHHHhC
Confidence 5799999999999876 47899999999999999998877663
No 58
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.11 E-value=2.2 Score=38.98 Aligned_cols=85 Identities=26% Similarity=0.473 Sum_probs=50.2
Q ss_pred CCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCc-eeEEEecCCce---eee----eecc
Q 018935 227 GMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPV-HAYVLVPGGKT---CYL----SELK 298 (348)
Q Consensus 227 GmGdRVCVDtcsll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaV-HaYv~~pggkT---~YL----SEL~ 298 (348)
+ |.|.|. |+.+.|.|.=+.-.+-+| |.- .+.| -|||=.+-= --|+ -.||. +|. .||+
T Consensus 48 ~-G~~~~t-----~Ra~DG~~tL~~~Ga~~L-~~~-l~~P-----~~RVvV~~E~e~f~--r~Gk~VFaKfVi~~D~~iR 112 (155)
T COG1370 48 D-GERIAT-----VRANDGLFTLTIEGARRL-HRA-LPFP-----RMRVVVSDEAEEFV--RKGKSVFAKFVIDVDEEIR 112 (155)
T ss_pred C-CEEEEE-----EEcCCceEEechhhhHHH-Hhc-CCCC-----ceEEEeccccHHHH--HhccchhhhheeccCcccC
Confidence 5 999985 777888886665555444 332 1222 244422110 0011 01221 111 4899
Q ss_pred CCCeEEEEcCCCCeeEEeeeeEEeecccee
Q 018935 299 SGKEVIVVDQKGRQRTAVVGRVKIESRPLI 328 (348)
Q Consensus 299 aG~eVLvVd~~G~tR~~~VGRvKIE~RPLl 328 (348)
+|||||+||.+++- .-|||+-+-.+-|.
T Consensus 113 ~~dEvlVVne~d~L--lAvGra~ls~~E~~ 140 (155)
T COG1370 113 AGDEVLVVNEDDEL--LAVGRALLSGAEMR 140 (155)
T ss_pred CCCeEEEECCCCcE--EEeeeEeecHHHHh
Confidence 99999999999865 88999987666554
No 59
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=75.70 E-value=8.9 Score=34.60 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=67.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 018935 60 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~------~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~ 133 (348)
-++.....+.|++++-+..++ .+..+.+.+...+ |+...+ -+.++++.+.+.. ..+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~i-Pi~~~~---------------~i~~~~~v~~~~~--~Ga 95 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSL-PVLRKD---------------FIIDPYQIYEARA--AGA 95 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCC-CEEECC---------------eecCHHHHHHHHH--cCC
Confidence 578888999999987664322 2223333322111 323221 2456655444432 267
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 018935 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (348)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (348)
+.+++...|...==+++++.++..-+...+..+.+.+|++. +++.|+|.+.+.+.|
T Consensus 96 d~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~---~~~~g~~~i~~t~~~ 151 (217)
T cd00331 96 DAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELER---ALALGAKIIGINNRD 151 (217)
T ss_pred CEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHH---HHHcCCCEEEEeCCC
Confidence 88988777765322355555444446677888899999655 566899999888655
No 60
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=75.60 E-value=5.5 Score=39.08 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=37.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 018935 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
..+|..++.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++.
T Consensus 189 ~~kIeVEv~tleqa~ea---~~agaDiI~LDn~~~e~l~~av~~~~ 231 (284)
T PRK06096 189 EKKIVVEADTPKEAIAA---LRAQPDVLQLDKFSPQQATEIAQIAP 231 (284)
T ss_pred CCCEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 35799999999998865 68999999999999999998887763
No 61
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=75.53 E-value=4.8 Score=27.44 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=19.7
Q ss_pred EEEEe-CchhHHHHHHHhCCcEEEEc
Q 018935 53 VWIWT-ESKQVMTAAVERGWNTFVFL 77 (348)
Q Consensus 53 vWiw~-~~K~~vT~ALEsG~~~~v~~ 77 (348)
|-+|+ ++.+.++.++..|+|+|+.+
T Consensus 2 V~~WT~d~~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 2 VYFWTPDKPASWRELLDLGVDGIMTD 27 (30)
T ss_dssp EEEET--SHHHHHHHHHHT-SEEEES
T ss_pred eEEecCCCHHHHHHHHHcCCCEeeCC
Confidence 56777 57889999999999999864
No 62
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=75.41 E-value=36 Score=30.83 Aligned_cols=130 Identities=14% Similarity=0.093 Sum_probs=63.5
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcCc---ch----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhh
Q 018935 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE---NQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL 123 (348)
Q Consensus 53 vWiw~--~~K~~vT~ALEsG~~~~v~~~~---~~----e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~ 123 (348)
+|+=. .+.+.+..+++.|++.+++... +. +.+++++.-..+-.+-+.+|+..- +|..-. ...++.++
T Consensus 75 i~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~-~g~~~~---~~~~~~~~ 150 (230)
T TIGR00007 75 VQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAV-KGWLEK---SEVSLEEL 150 (230)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEE-cCCccc---CCCCHHHH
Confidence 55522 5889999999999999998742 22 333344321122223334443211 111000 00233332
Q ss_pred hhhccccCCCCeEEEeCCC----Ceeeehhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 124 QQLQPADGQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 124 e~~~~~~~~~~~vvv~~~D----W~iIPlENliA~~-q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
.+..... .++.+++...+ -.-+-++ ++.++ +..+..+++ -+.+.+|++.++ +.|+|||++.+.
T Consensus 151 ~~~~~~~-g~~~ii~~~~~~~g~~~g~~~~-~i~~i~~~~~ipvia~GGi~~~~di~~~~---~~Gadgv~ig~a 220 (230)
T TIGR00007 151 AKRLEEL-GLEGIIYTDISRDGTLSGPNFE-LTKELVKAVNVPVIASGGVSSIDDLIALK---KLGVYGVIVGKA 220 (230)
T ss_pred HHHHHhC-CCCEEEEEeecCCCCcCCCCHH-HHHHHHHhCCCCEEEeCCCCCHHHHHHHH---HCCCCEEEEeHH
Confidence 2222222 35656643221 0111222 22222 222334554 378899998765 489999998653
No 63
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.08 E-value=6.1 Score=39.17 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=35.9
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+
T Consensus 206 ~kIeVEvetleea~eA---~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 206 VPVQIEVETLAQLETA---LAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred CcEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhh
Confidence 5799999999998765 5899999999999999998876655
No 64
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=74.84 E-value=7.5 Score=40.72 Aligned_cols=135 Identities=18% Similarity=0.220 Sum_probs=87.9
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
+|++.+.-|++-|+|.+-+.. .+++.++++..+ +...|..+..+.+|.+++.++.+..-....|-+
T Consensus 175 kD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~-------------l~~~~~~~~iiakIEt~~av~nldeI~~~~DgI 241 (480)
T cd00288 175 KDKADLRFGVEQGVDMIFASFVRKASDVLEIREV-------------LGEKGKDIKIIAKIENQEGVNNFDEILEASDGI 241 (480)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCceEEEEECCHHHHHhHHHHHHhcCEE
Confidence 578899999999999766552 234455544444 122244567888999999988877766668888
Q ss_pred EEeCCCCe-eeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 018935 137 VIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (348)
Q Consensus 137 vv~~~DW~-iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (348)
++--.|-. =+|.|.+.+ .....+.-++. ...+-.|+--.+.+..-|+|||+|..+.
T Consensus 242 mIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~y 321 (480)
T cd00288 242 MVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKY 321 (480)
T ss_pred EECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCC
Confidence 88544433 246666543 22222222222 1344578888889999999999996654
Q ss_pred -HHHHHHHHHhhcc
Q 018935 193 -VKAVLALKEYFDG 205 (348)
Q Consensus 193 -~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 322 PveaV~~m~~I~~~ 335 (480)
T cd00288 322 PVEAVKAMARICLE 335 (480)
T ss_pred HHHHHHHHHHHHHH
Confidence 3667777777653
No 65
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=74.26 E-value=21 Score=34.07 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=77.9
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcCc------chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhh
Q 018935 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (348)
Q Consensus 53 vWiw~--~~K~~vT~ALEsG~~~~v~~~~------~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e 124 (348)
.|+-. +-.++.....+.|++++-+..+ +.+..+...+...+ |+..+| -|.++-+.+
T Consensus 64 g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~i-Pvl~kd---------------fi~~~~qi~ 127 (260)
T PRK00278 64 GVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSL-PVLRKD---------------FIIDPYQIY 127 (260)
T ss_pred CccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCC-CEEeee---------------ecCCHHHHH
Confidence 35533 2478888889999999766322 23344444332111 322111 245666544
Q ss_pred hhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 018935 125 QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (348)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (348)
++.. ..+|.+.+...+...--++.++...+.-+-.+++++.|.+|++.+ ++.|+|=|-+.+.|
T Consensus 128 ~a~~--~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A---~~~gadiIgin~rd 190 (260)
T PRK00278 128 EARA--AGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERA---LKLGAPLIGINNRN 190 (260)
T ss_pred HHHH--cCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH---HHcCCCEEEECCCC
Confidence 4432 367888888877654458889988888788999999999999774 47799988877644
No 66
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=72.59 E-value=17 Score=36.79 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=61.5
Q ss_pred CchhHHHHHHHh---CCcEEEEcCcchhhhhhccceeeeeeeeecC-CccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 018935 58 ESKQVMTAAVER---GWNTFVFLSENQQLAIDWSTIALLDPLFIKE-GEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (348)
Q Consensus 58 ~~K~~vT~ALEs---G~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~-g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~ 133 (348)
+..+.+.+|=+- |+..+.+..+|...++.+..++-+ .+.- +..+. .|+ -|.+|+.++.+....
T Consensus 182 d~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~---avmPl~~pIG-sg~------gv~~p~~i~~~~e~~--- 248 (326)
T PRK11840 182 DMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAV---AVMPLGAPIG-SGL------GIQNPYTIRLIVEGA--- 248 (326)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCE---EEeecccccc-CCC------CCCCHHHHHHHHHcC---
Confidence 356778888888 888877777777777777666432 1211 22222 222 245777766655431
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHHH
Q 018935 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVLA 198 (348)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~~v~~ 198 (348)
+ +| .=+=|-..+++||.. ++|.|+|||++.+ +||-...+
T Consensus 249 ~-----------vp------------VivdAGIg~~sda~~---AmelGadgVL~nSaIa~a~dPv~Ma~ 292 (326)
T PRK11840 249 T-----------VP------------VLVDAGVGTASDAAV---AMELGCDGVLMNTAIAEAKNPVLMAR 292 (326)
T ss_pred C-----------Cc------------EEEeCCCCCHHHHHH---HHHcCCCEEEEcceeccCCCHHHHHH
Confidence 0 11 112345678888765 5789999999876 67755433
No 67
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=72.25 E-value=65 Score=28.39 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=56.3
Q ss_pred hHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeC
Q 018935 61 QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDL 140 (348)
Q Consensus 61 ~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~ 140 (348)
+-+..|++.|+|.+.++.++.. ...+.. +.+.+..++.. +.+.++..++. ...+|++.+..
T Consensus 72 ~~~~~a~~~gad~vh~~~~~~~-~~~~~~--------------~~~~~~~~g~~--~~t~~e~~~a~--~~gaD~v~~~~ 132 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQDDLP-VADARA--------------LLGPDAIIGLS--THTLEEAAAAL--AAGADYVGVGP 132 (212)
T ss_pred ChHHHHHHcCCCEEecCcccCC-HHHHHH--------------HcCCCCEEEEe--CCCHHHHHHHh--HcCCCEEEECC
Confidence 4567788888888877653211 011111 11234445544 34555543333 23688998732
Q ss_pred CCCee-----ee---hhhhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEE-----ecCCHH
Q 018935 141 PDWQV-----IP---AENIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVL-----KVEDVK 194 (348)
Q Consensus 141 ~DW~i-----IP---lENliA~~q~~~-~~l~a~v~~~~eA~~al~~LE~G~DGVvl-----~~~d~~ 194 (348)
-..+. .| ++.+-.-.+..+ ..|++.-. .. .+.+-.+++.|+|||++ ..+|+.
T Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GG-I~-~~~i~~~~~~Ga~gv~~gs~i~~~~d~~ 198 (212)
T PRK00043 133 IFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGG-IT-PENAPEVLEAGADGVAVVSAITGAEDPE 198 (212)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECC-cC-HHHHHHHHHcCCCEEEEeHHhhcCCCHH
Confidence 22211 11 333322111112 45555422 21 35566888999999997 455654
No 68
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=72.17 E-value=4.5 Score=37.19 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=43.0
Q ss_pred CCCCeeeecC---CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEE
Q 018935 269 ASRPFRVNAG---PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (348)
Q Consensus 269 a~RPFRVNAG---aVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeA 332 (348)
..|||-+... -++=.|..-|.-|+||.+++.||+|.+....|+.= ..-. +.+|+++|-+
T Consensus 49 ~~r~ySi~s~~~~~l~l~Vk~~G~~t~~l~~l~~G~~v~i~gP~G~~f--~l~~---~~~~~vlIag 110 (250)
T PRK00054 49 LERPISISDIDKNEITILYRKVGEGTKKLSKLKEGDELDIRGPLGNGF--DLEE---IGGKVLLVGG 110 (250)
T ss_pred CceeeEEeeeCCCEEEEEEEEcChHHHHHhcCCCCCEEEEEcccCCCC--CCCC---CCCeEEEEec
Confidence 3678877544 45566666788899999999999999999988731 1111 6689988853
No 69
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.67 E-value=8.7 Score=37.72 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=36.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
..+|-.++.|.+||+.+ ++.|+|.|+|.+-+++++++..+.+
T Consensus 196 ~~~I~VEv~tleea~eA---~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 196 PLTIEVETETLEQVQEA---LEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred CCEEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHH
Confidence 35799999999999865 4899999999999999998877765
No 70
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=71.51 E-value=28 Score=31.03 Aligned_cols=57 Identities=26% Similarity=0.447 Sum_probs=36.1
Q ss_pred CCCeeee-----cCCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 270 SRPFRVN-----AGPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 270 ~RPFRVN-----AGaVHaYv~~-pgg-kT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|||-+- .|-+.=+|.. ++| -|.||.. |+.||.|.+...-|..- . -....+|+++|=
T Consensus 50 ~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l~~~l~~Gd~v~i~gP~G~~~--~---~~~~~~~~vlia 114 (235)
T cd06217 50 QRSYSIASSPTQRGRVELTVKRVPGGEVSPYLHDEVKVGDLLEVRGPIGTFT--W---NPLHGDPVVLLA 114 (235)
T ss_pred eeeecccCCCCCCCeEEEEEEEcCCCcchHHHHhcCCCCCEEEEeCCceeeE--e---CCCCCceEEEEe
Confidence 4666553 2334444433 444 5899975 99999999998888641 1 112458888873
No 71
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=71.30 E-value=8.2 Score=37.76 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=42.2
Q ss_pred hhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 018935 148 AENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 148 lENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
+++.+.++... ..+|..++.+.+||+.+ ++.|+|.|+|+.-+++++++..+.+.
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~tleea~ea---~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEADTIEQALTV---LQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 45555544332 46799999999998865 68999999999999999988877663
No 72
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=71.05 E-value=22 Score=35.99 Aligned_cols=166 Identities=17% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHH---HHHHHHHh--hcccCeEEEecCCHHHHHHHHHhhcccccccceee
Q 018935 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSE---AQIFLEAL--EQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLS 214 (348)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~e---A~~al~~L--E~G~DGVvl~~~d~~~v~~l~~~~~~~~~~~~~l~ 214 (348)
.-.|.-.|.+.-.|.++..... -+... .++ ...++.+- ..|+-|-.+.|-+... -++..- .-...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~-- 142 (411)
T TIGR03224 73 QLTWDELPEEVTLPEAAAEPAA-AAGQD-DEEPSRGSKSSGVQEVEAAQHGSTRAPWSAAH-----PYVNLY-GVKAP-- 142 (411)
T ss_pred eeccccCCCcCChhhhhhCCcc-ccccC-ccccccchhhhhhhhhccccCCCCCCCccccC-----Cccccc-cCCCC--
Confidence 3488999988888766544221 11111 122 33333444 6777777777764332 122110 11111
Q ss_pred eeEEEEEEEEEcCC---cceEE---EeecC---CCCCCceEEEeccCceEEEEeeccc--cCCCCCCCCeeeecCC----
Q 018935 215 LMKATVTRVDVAGM---GDRVC---VDLCS---LMRPGEGLLVGSFARGLFLVHSECL--ESNYIASRPFRVNAGP---- 279 (348)
Q Consensus 215 L~~atVt~V~~vGm---GdRVC---VDtcs---ll~~GEGmLVGS~S~glFLVhsEt~--es~Yva~RPFRVNAGa---- 279 (348)
..|+|+.++.++- .+.|. +|.-. -+.||+=+.| .+ .-+. ..|+ -.|||-+---+
T Consensus 143 -~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l--------~~-pg~~~~g~~~-~~R~YSIas~~~~~~ 211 (411)
T TIGR03224 143 -ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGI--------LP-PGTDASGKPH-YARMYSVASPRNGER 211 (411)
T ss_pred -eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEE--------ec-CCcCcCCCcC-cceeeeecCCCCccC
Confidence 3489999998842 33443 44322 1344443222 11 1111 1122 24666653211
Q ss_pred -----c-eeEEEec---------CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEE
Q 018935 280 -----V-HAYVLVP---------GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILV 330 (348)
Q Consensus 280 -----V-HaYv~~p---------ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLI 330 (348)
+ ..|-.+| |--|+||.+|+.||+|.+....|+.-... .-..+|+|||
T Consensus 212 ~~~~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp----~~~~~~lllI 273 (411)
T TIGR03224 212 PGYNNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMP----NHPESSIMMI 273 (411)
T ss_pred CCCCEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCC----CCCCCCEEEE
Confidence 1 2333444 55799999999999999999999742211 1235788887
No 73
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=70.58 E-value=5.8 Score=34.50 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=27.4
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 018935 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (348)
Q Consensus 288 ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvK 321 (348)
++--+.|.+|+.||+|.+.+.+|++.+=.|-+++
T Consensus 64 ~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~~~ 97 (144)
T cd05829 64 PAVFFRLGDLRKGDKVEVTRADGQTATFRVDRVE 97 (144)
T ss_pred ChhhcchhcCCCCCEEEEEECCCCEEEEEEeEEE
Confidence 3445679999999999999999998777776654
No 74
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=70.07 E-value=44 Score=30.90 Aligned_cols=44 Identities=30% Similarity=0.368 Sum_probs=28.5
Q ss_pred Eec-CCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEeeccceeEEEE
Q 018935 285 LVP-GGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLILVEA 332 (348)
Q Consensus 285 ~~p-ggkT~YLSEL~aG~eVLvVd~~-G~tR~~~VGRvKIE~RPLlLIeA 332 (348)
..| |.-|.||..|+.||+|.+...- |... .. -.-+.+|++||=+
T Consensus 69 ~~~~G~~S~~L~~l~~Gd~v~i~gp~~g~f~---l~-~~~~~~~~vlIag 114 (248)
T PRK10926 69 TVPEGKLSPRLAALKPGDEVQVVSEAAGFFV---LD-EVPDCETLWMLAT 114 (248)
T ss_pred EeCCCCcChHHHhCCCCCEEEEecCCCcceE---cc-CCCCCCeEEEEEe
Confidence 345 4467899999999999998753 5331 11 0113478888843
No 75
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=69.62 E-value=19 Score=35.19 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=58.5
Q ss_pred eeeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCC----cee
Q 018935 213 LSLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGP----VHA 282 (348)
Q Consensus 213 l~L~~atVt~V~~vGmGd-RVCVDtc-----sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGa----VHa 282 (348)
-...+++|++++.++-.- ++.+..- --++||+=+-| .-+....++...|||-+.--| .-=
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l----------~~~~~~~~~~~~R~ySias~p~~~~l~~ 221 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGV----------RLDPEGEEYQEIRQYSLSDAPNGKYYRI 221 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEE----------EEecCCccccceeEEEeeeCCCCCeEEE
Confidence 346678999999876442 2333321 12344443222 111111234445888875433 222
Q ss_pred EEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 283 YVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 283 Yv~~-pgg-kT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|.. |+| -|.||.. |+.||+|.+-...|+-.. - .-+.||+++|=
T Consensus 222 ~Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l---~--~~~~~~~vlIa 268 (399)
T PRK13289 222 SVKREAGGKVSNYLHDHVNVGDVLELAAPAGDFFL---D--VASDTPVVLIS 268 (399)
T ss_pred EEEECCCCeehHHHhhcCCCCCEEEEEcCcccccc---C--CCCCCcEEEEe
Confidence 3333 445 4899965 999999999988887421 1 11358999873
No 76
>PF13403 Hint_2: Hint domain
Probab=69.41 E-value=12 Score=32.94 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=38.7
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEe--------eccceeEEEEEE
Q 018935 282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI--------ESRPLILVEAKV 334 (348)
Q Consensus 282 aYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKI--------E~RPLlLIeAe~ 334 (348)
+-|..|.| -+-.++|+.||+|+..| .|-....-|||.++ +.-.++.|.|-+
T Consensus 7 T~I~T~~G-~~~Ve~L~~GD~V~T~d-gg~~~V~wig~~~~~~~~~~~~~~~~pvri~a~a 65 (147)
T PF13403_consen 7 TLIETPDG-PRPVEDLRPGDRVLTRD-GGFQPVRWIGRRTVSPADLPAPPRLAPVRIPAGA 65 (147)
T ss_pred CEEecCCc-CeEeeccCCCCEEEecC-CCEEEEEEEEEEEecccccCcCCCcceEEEECCc
Confidence 45778888 77899999999999988 34455678999998 344556676655
No 77
>PLN02765 pyruvate kinase
Probab=69.33 E-value=4.5 Score=43.00 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=87.9
Q ss_pred CchhHH-HHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCC-eeEEEEEecChhhhhhhccccCCCC
Q 018935 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAE 134 (348)
Q Consensus 58 ~~K~~v-T~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk-~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (348)
.||+.+ .-|++-|+|.|-... .+++.+.++.++ +++.|. .+..+.+|.+++.++.+..-...+|
T Consensus 207 kD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sD 273 (526)
T PLN02765 207 KDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREF-------------LSSLGLSQTQIFAKIENVEGLTHFDEILQEAD 273 (526)
T ss_pred hHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 467777 689999999554432 224444444443 222232 5568889999999999888887889
Q ss_pred eEEEeCCCCe-eeehhhhhh-------cccCCCceEEE----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 018935 135 NIVIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (348)
Q Consensus 135 ~vvv~~~DW~-iIPlENliA-------~~q~~~~~l~a----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (348)
-++|.--|-- =||+|.+-. .+...+.-+|+ ...+-.|+--...+.--|+|+|+|..+.
T Consensus 274 gIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~ 353 (526)
T PLN02765 274 GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGL 353 (526)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEEehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCC
Confidence 9998665654 377777633 22222223443 1234478888888999999999999543
Q ss_pred --HHHHHHHHHhhcc
Q 018935 193 --VKAVLALKEYFDG 205 (348)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 354 yPveaV~~m~~I~~~ 368 (526)
T PLN02765 354 YPVETISTVGRICAE 368 (526)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3567777777754
No 78
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=69.26 E-value=12 Score=35.10 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=59.1
Q ss_pred CchhHHHHHHHhCCcEEEEcC---cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCC
Q 018935 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQA 133 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~---~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~ 133 (348)
.-.+.+..+.+.|+|+++++. |..+...++-+ ..++.|.+.+..+.-.+ .+.++.+... .
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~-------------~~~~~Gl~~~~~v~p~T~~e~l~~~~~~---~ 152 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVE-------------IIKNKGLKPVFFTSPKFPDLLIHRLSKL---S 152 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHH-------------HHHHcCCCEEEEECCCCCHHHHHHHHHh---C
Confidence 446668999999999999973 21111111111 12344555555544444 4444544433 3
Q ss_pred CeEE-Ee---CCCCeeeeh-hhhhhcccCCC--ceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 134 ENIV-ID---LPDWQVIPA-ENIVASFQGSG--KTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 134 ~~vv-v~---~~DW~iIPl-ENliA~~q~~~--~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
+.++ +. ..+.+.+|- .+.+..+.... ..|+ ..+++.++++ .+++.|+||+|+-+.
T Consensus 153 ~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~---~~~~~gaD~vvvGSa 216 (244)
T PRK13125 153 PLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDAR---DALSAGADGVVVGTA 216 (244)
T ss_pred CCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHH---HHHHcCCCEEEECHH
Confidence 3333 31 123343322 33444443221 1232 2355666665 556899999998763
No 79
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=68.23 E-value=15 Score=32.30 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=17.9
Q ss_pred CchhHHHHHHHhCCcEEEEcCc
Q 018935 58 ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
...+.+..+.+.|+|++++..+
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPE 88 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccC
Confidence 3456788889999999998865
No 80
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=68.04 E-value=8.1 Score=34.22 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=36.1
Q ss_pred CCCeeee----cCCceeEEEe-c--CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 270 SRPFRVN----AGPVHAYVLV-P--GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 270 ~RPFRVN----AGaVHaYv~~-p--ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|||-+- .|-+.=.|.. | |+-|+||..|+.||+|.+-...|+... .+|+++|=
T Consensus 47 ~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l~~G~~v~i~gP~G~~~~---------~~~~vlia 106 (218)
T cd06196 47 KRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRLQPGDTLLIEDPWGAIEY---------KGPGVFIA 106 (218)
T ss_pred ccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhCCCCCEEEEECCccceEe---------cCceEEEe
Confidence 4555552 2434444544 3 456999999999999999999997531 36777763
No 81
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=67.93 E-value=28 Score=30.82 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=60.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 59 SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~---~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
-.+.+..+++.|++.+.++..+ .++.+...++..+. .+.+. .+-|.+.-++ +.. -.++-
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~----------~~~~~----~liin~~~~l---a~~-~~~dG 75 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELC----------QKYGV----PLIINDRVDL---ALE-LGADG 75 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHH----------HHTTG----CEEEES-HHH---HHH-CT-SE
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHh----------hcceE----EEEecCCHHH---HHh-cCCCE
Confidence 4688999999999999998744 33333333332211 01111 1223443332 221 24566
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 136 vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
+=+...|. |....-..++ ....|-+.+.|.+|++.+. +.|+|=|.+.|=
T Consensus 76 vHl~~~~~---~~~~~r~~~~-~~~~ig~S~h~~~e~~~a~---~~g~dYv~~gpv 124 (180)
T PF02581_consen 76 VHLGQSDL---PPAEARKLLG-PDKIIGASCHSLEEAREAE---ELGADYVFLGPV 124 (180)
T ss_dssp EEEBTTSS---SHHHHHHHHT-TTSEEEEEESSHHHHHHHH---HCTTSEEEEETS
T ss_pred EEeccccc---chHHhhhhcc-cceEEEeecCcHHHHHHhh---hcCCCEEEECCc
Confidence 77766665 4444444332 3456788999999965554 899999999764
No 82
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=66.88 E-value=8.6 Score=35.99 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=40.3
Q ss_pred CCCeeeecC---CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 270 SRPFRVNAG---PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 270 ~RPFRVNAG---aVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|||.+... -..=.|..-|..|.||..|+.||+|.+-...|+.- ..-+ ...||+++|=
T Consensus 46 ~~pySi~~~~~~~l~~~Vk~~G~~S~~L~~l~~Gd~v~i~gP~G~~f--~~~~--~~~~~~llIA 106 (261)
T TIGR02911 46 EAPISVSGIGEGYIDLTIRRVGKVTDEVFTLKEGDNLFLRGPYGNGF--DVDN--YKHKELVVVA 106 (261)
T ss_pred ccceecCCCCCCeEEEEEEeCchhhHHHHcCCCCCEEEEecCCCCCc--ccCc--cCCceEEEEe
Confidence 377777553 24445555688899999999999999988888731 1111 2358988874
No 83
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=66.87 E-value=26 Score=29.82 Aligned_cols=108 Identities=14% Similarity=0.071 Sum_probs=55.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 018935 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (348)
.+.+..+++.|++.+.++..+.........+..+..+ .+.-|.. . -+.+ +.+. +... .++.+-+.
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~-------~~~~~~~--l--~~~~--~~~~-a~~~-g~~~vh~~ 79 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALREL-------CRKYGVP--L--IIND--RVDL-ALAV-GADGVHLG 79 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH-------HHHhCCe--E--EEeC--hHHH-HHHc-CCCEEecC
Confidence 6788999999999998875432222111111111110 0111211 1 2222 2222 2222 44555554
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
..+.. .+. +..+.+.+..+-..+.+.+|++ .+++.|+|.|++.
T Consensus 80 ~~~~~---~~~-~~~~~~~~~~~g~~~~t~~~~~---~~~~~g~d~i~~~ 122 (196)
T cd00564 80 QDDLP---VAE-ARALLGPDLIIGVSTHSLEEAL---RAEELGADYVGFG 122 (196)
T ss_pred cccCC---HHH-HHHHcCCCCEEEeeCCCHHHHH---HHhhcCCCEEEEC
Confidence 44432 222 2233334556777788887765 4567899999885
No 84
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=66.71 E-value=17 Score=38.01 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=69.6
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 018935 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (348)
+..+.+.+.+|.|+|.+.++..|-.....+..|..+...+ + +..+++ ..|.++++...+.. ..+|.+.
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~-------~--~~~v~a-G~V~t~~~a~~~~~--aGad~I~ 308 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNY-------P--HVDIIA-GNVVTADQAKNLID--AGADGLR 308 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhC-------C--CceEEE-CCcCCHHHHHHHHH--cCCCEEE
Confidence 5689999999999999998863211111111222211100 0 122222 36788888665553 2567776
Q ss_pred Ee-C----------CC---CeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 138 ID-L----------PD---WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 138 v~-~----------~D---W~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
+. . .+ +++-.+.++...++..+..+|+ -+.+..|+-. +|..|+|+|++-+-
T Consensus 309 vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~k---Ala~GA~~Vm~G~~ 375 (495)
T PTZ00314 309 IGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICK---ALALGADCVMLGSL 375 (495)
T ss_pred ECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH---HHHcCCCEEEECch
Confidence 52 1 12 2333334454444445678999 8899988754 56799999998765
No 85
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=66.13 E-value=57 Score=30.20 Aligned_cols=122 Identities=20% Similarity=0.179 Sum_probs=72.3
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (348)
-.+++.++++.|+..+=++-.+..-.+.+..+..--+ +.-+.--..|.++++.+.+... .+++++.
T Consensus 24 ~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~------------~~~~iGaGTV~~~~~~~~a~~a--GA~fivs 89 (206)
T PRK09140 24 ALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG------------DRALIGAGTVLSPEQVDRLADA--GGRLIVT 89 (206)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC------------CCcEEeEEecCCHHHHHHHHHc--CCCEEEC
Confidence 3678899999999987776443322222333211000 1112223477899987665432 5688887
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 018935 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (348)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~---d~~~v~~l~~~~ 203 (348)
-..|- .++...+..+.-++..+.|++|+.. +.+.|+|-|-+-|. .++.+++++..+
T Consensus 90 p~~~~------~v~~~~~~~~~~~~~G~~t~~E~~~---A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 90 PNTDP------EVIRRAVALGMVVMPGVATPTEAFA---ALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred CCCCH------HHHHHHHHCCCcEEcccCCHHHHHH---HHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 44443 2333334445567788999999755 55789999988443 355566655544
No 86
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=66.01 E-value=26 Score=34.26 Aligned_cols=109 Identities=9% Similarity=0.090 Sum_probs=60.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~-e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (348)
.++.+..++|.|++.|.+...+. +.++.+. ..|.. ++..|.+.++...+.. ..+|.++
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk-----------------~~g~~--v~~~v~s~~~a~~a~~--~GaD~Iv 134 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRLK-----------------ENGVK--VIPVVASVALAKRMEK--AGADAVI 134 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH-----------------HcCCE--EEEEcCCHHHHHHHHH--cCCCEEE
Confidence 36788889999999888754322 1222222 22322 3456777776444332 2688898
Q ss_pred EeCCCCe----eeehhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 138 IDLPDWQ----VIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 138 v~~~DW~----iIPlENliA~~q~~-~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
+...+.. -.|.-.++.++... +..|++. +.|.++ +..+|+.|+|||++-+.
T Consensus 135 v~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~---~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 135 AEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRG---MAAAFALGAEAVQMGTR 192 (307)
T ss_pred EECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHH---HHHHHHcCCCEeecchH
Confidence 8654111 22333333333211 2345543 455555 55555689999998763
No 87
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=65.94 E-value=3.8 Score=34.99 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEE
Q 018935 168 TPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (348)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~~~~~~~~~l~L~~atVt~V 223 (348)
|.-+.++...+|.+|.||++--.=--+--..+|+...+.. ++..+.+.||||..+
T Consensus 43 ~~~~re~l~qaLT~G~egav~f~~k~g~R~~IKe~~~E~s-~k~~~~~sPatvR~v 97 (98)
T PF11247_consen 43 SGFQREMLVQALTHGPEGAVAFVVKQGIREAIKEMLSEYS-DKESFKFSPATVREV 97 (98)
T ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc-cccceeecCceEEee
Confidence 8999999999999999998722111111112334443322 567799999999865
No 88
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=65.86 E-value=13 Score=36.86 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=35.3
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
.+|..+|.|.+||+. +++.|+|.|+|+.=++++++++.+.+
T Consensus 209 ~kIeVEv~sleea~e---a~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 209 VPVEVEVENLDELDQ---ALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred CCEEEEeCCHHHHHH---HHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 579999999999875 56899999999999999988877654
No 89
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=65.83 E-value=6 Score=37.41 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=39.1
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeEE-EEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 270 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEVI-VVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 270 ~RPFRVNA-----GaVHaYv~~pggkT~YLSEL~aG~eVL-vVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|||-+-. |-+-=.+..-|.-|+||++|+.||+|+ +...-|+.-.. -+.+|+++|=
T Consensus 44 ~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l~~Gd~v~~i~GP~G~~~~~------~~~~~~llIa 105 (281)
T PRK06222 44 RIPLTIADYDREKGTITIVFQAVGKSTRKLAELKEGDSILDVVGPLGKPSEI------EKFGTVVCVG 105 (281)
T ss_pred ceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcCCCCCEEeeEEcCCCCCccc------CCCCeEEEEe
Confidence 46777632 223344555688999999999999995 99999985321 1247888763
No 90
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=65.67 E-value=3.5 Score=41.87 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=65.5
Q ss_pred CCcEEEE-------EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceee--eeeeeecCC-ccccCCCCeeEEEEEec
Q 018935 49 KPKRVWI-------WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIAL--LDPLFIKEG-EVYDSGDRRVGSIIEVS 118 (348)
Q Consensus 49 ~~K~vWi-------w~~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~--i~~l~~~~g-~~~~~~gk~v~~~~~v~ 118 (348)
.+-.-|+ |+-.+++|.-|=..|+-++++.-+..-+.+..+++.- ..| .. .+.+-++..- ..
T Consensus 119 p~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp----~~l~lknfe~~~~-----~~ 189 (363)
T KOG0538|consen 119 PPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLP----KNLTLKNFEGLKL-----TE 189 (363)
T ss_pred CCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCC----ccccccccccccc-----cc
Confidence 3445676 2236899999999999999988765555555554422 111 10 1111111110 01
Q ss_pred ChhhhhhhccccCCCCeEEE---eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 119 TPQELQQLQPADGQAENIVI---DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 119 ~~ed~e~~~~~~~~~~~vvv---~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
.++. ...+...|+.. ...+|+=|+.=.=+-.+ --|+..+-+.|||+.| .|+|++||++..-
T Consensus 190 v~~~-----~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~L----PIvvKGilt~eDA~~A---ve~G~~GIIVSNH 253 (363)
T KOG0538|consen 190 VEEA-----GDSGLAAYVSSQIDPSLSWKDIKWLRSITKL----PIVVKGVLTGEDARKA---VEAGVAGIIVSNH 253 (363)
T ss_pred CCcc-----cchhhhhhhhcCCCCCCChhhhHHHHhcCcC----CeEEEeecccHHHHHH---HHhCCceEEEeCC
Confidence 1110 01111112211 13489887653322221 1367778888998875 6899999998754
No 91
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=65.54 E-value=86 Score=28.12 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=61.4
Q ss_pred chhHHHHHHHhCCcE--EEEcCcc-----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 018935 59 SKQVMTAAVERGWNT--FVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~--~v~~~~~-----~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~ 131 (348)
+.+.+..|++.|+|. |++.+.. .+.++++.++.. ..-+.|++++ =.+.+++..++...
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~-------------~~~~~V~v~v-n~~~~~i~~ia~~~- 72 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALP-------------PFVKRVGVFV-NEDLEEILEIAEEL- 72 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCC-------------CCCcEEEEEe-CCCHHHHHHHHHhc-
Confidence 467889999999995 5553321 233444444311 1113344432 12345555565544
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEE--EEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (348)
..+.|-+...+ |.+.+ .++.. .+.+++ ..+.+..+... ....+.|+|.+++++...
T Consensus 73 ~~d~Vqlhg~e----~~~~~-~~l~~~~~~~~i~~i~~~~~~~~~~-~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 73 GLDVVQLHGDE----SPEYC-AQLRARLGLPVIKAIRVKDEEDLEK-AAAYAGEVDAILLDSKSG 131 (203)
T ss_pred CCCEEEECCCC----CHHHH-HHHHhhcCCcEEEEEecCChhhHHH-hhhccccCCEEEEcCCCC
Confidence 57888887766 33322 22221 122344 44545444433 455678999999988643
No 92
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=64.58 E-value=18 Score=35.66 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=63.4
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcc--h----hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 018935 56 WTESKQVMTAAVERGWNTFVFLSEN--Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (348)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~v~~~~~--~----e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (348)
+.+.++.+.+.+|.|++.|.++..+ . +.++++.+- .| +..+. ...+.++++...+..
T Consensus 92 ~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~---~p------------~v~Vi-~G~v~t~~~A~~l~~- 154 (325)
T cd00381 92 REDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK---YP------------NVDVI-AGNVVTAEAARDLID- 154 (325)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH---CC------------CceEE-ECCCCCHHHHHHHHh-
Confidence 3467899999999999998876421 1 222222211 00 11111 135677777555443
Q ss_pred cCCCCeEEEeC-----------CCCe---eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 130 DGQAENIVIDL-----------PDWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 130 ~~~~~~vvv~~-----------~DW~---iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
..+|.+++.. .+|- .-.+.++...+...+..||+ -+.+..++.. +|+.|+|||++-+.
T Consensus 155 -aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~k---Ala~GA~~VmiGt~ 228 (325)
T cd00381 155 -AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVK---ALAAGADAVMLGSL 228 (325)
T ss_pred -cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH---HHHcCCCEEEecch
Confidence 3678887621 0121 11223333333333456887 6667766655 45689999998654
No 93
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=64.54 E-value=52 Score=30.12 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=45.6
Q ss_pred cCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 130 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 130 ~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
....|.++++-.-+..=.+|-+=.=.+....-=+......++.....++|+.|++|.+++..+++++.+.
T Consensus 44 ~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~a 113 (211)
T COG2197 44 ELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEA 113 (211)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 3367888887666654444432221112222234445566777888999999999999999999876543
No 94
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=64.36 E-value=6.9 Score=35.57 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=40.2
Q ss_pred CCCCeeee-----cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 269 ASRPFRVN-----AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 269 a~RPFRVN-----AGaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
..|||-+= .|-+.=.+..-|..|+||..++.||+|.+...-|+.-. . -+ +.+|+++|=
T Consensus 42 ~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~~~G~~l~i~gP~G~~~~--~--~~-~~~~~llia 104 (243)
T cd06192 42 ERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAELKPGEKLDVMGPLGNGFE--G--PK-KGGTVLLVA 104 (243)
T ss_pred eeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhCCCCCEEEEEccCCCCCc--c--CC-CCCEEEEEe
Confidence 35777762 23344455556888999999999999999999986421 1 01 467888873
No 95
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=63.97 E-value=35 Score=32.02 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=66.3
Q ss_pred HHHHHHHhCCcEEEEcCc-----chhhhhhccceeeee-----eeeecCCccccCCCCeeEEEEEecChhhhhhhcccc-
Q 018935 62 VMTAAVERGWNTFVFLSE-----NQQLAIDWSTIALLD-----PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD- 130 (348)
Q Consensus 62 ~vT~ALEsG~~~~v~~~~-----~~e~~~~l~~i~~i~-----~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~- 130 (348)
.+..|++.|++.+-+... +.+..+++..+..++ |+++. ...+|..++. .+++...+++...
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~----~~~~Gvh~~~----~~~~~~~~~~~~a~ 166 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAM----MYPRGPHIDD----RDPELVAHAARLGA 166 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEE----EeccCccccc----ccHHHHHHHHHHHH
Confidence 477899999997666432 123333333332221 22220 0122322221 2344444432222
Q ss_pred -CCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE--EcC--CHHHHHH-HHHHhhcccCeEEE-----ecCCH-HHHHH
Q 018935 131 -GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA--ISK--TPSEAQI-FLEALEQGLGGIVL-----KVEDV-KAVLA 198 (348)
Q Consensus 131 -~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a--~v~--~~~eA~~-al~~LE~G~DGVvl-----~~~d~-~~v~~ 198 (348)
..+||+-..+. ..+|.+-...+..+..|++ ..+ |.+++.. +-++++.|++|+.+ ..+|| ..+++
T Consensus 167 ~~GADyikt~~~----~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~ 242 (258)
T TIGR01949 167 ELGADIVKTPYT----GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKA 242 (258)
T ss_pred HHCCCEEeccCC----CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHH
Confidence 36888887543 2444443332223334444 455 5666643 45788999999975 44565 44555
Q ss_pred HHHhhc
Q 018935 199 LKEYFD 204 (348)
Q Consensus 199 l~~~~~ 204 (348)
++.++.
T Consensus 243 l~~~i~ 248 (258)
T TIGR01949 243 VCKIVH 248 (258)
T ss_pred HHHHHh
Confidence 666554
No 96
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=63.77 E-value=16 Score=36.62 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=34.9
Q ss_pred ceEEEEcCCHHHHHHHHHHhh------cccCeEEEecC---------CHHHHHHHHHhh
Q 018935 160 KTVFAISKTPSEAQIFLEALE------QGLGGIVLKVE---------DVKAVLALKEYF 203 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE------~G~DGVvl~~~---------d~~~v~~l~~~~ 203 (348)
.+|..+|.|.+||+.++ + .|+|.|+|+.= +++++++..+.+
T Consensus 204 ~kIeVEv~tleea~ea~---~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~ 259 (308)
T PLN02716 204 MKIEVETRTLEEVKEVL---EYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI 259 (308)
T ss_pred eeEEEEECCHHHHHHHH---HhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh
Confidence 57999999999998765 6 79999999999 999888766654
No 97
>PLN02334 ribulose-phosphate 3-epimerase
Probab=63.27 E-value=33 Score=31.59 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=61.7
Q ss_pred hhHHHHHHHhCCcEEEEcCc---chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC--CC
Q 018935 60 KQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--AE 134 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~---~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~--~~ 134 (348)
-+.+-.|++.|+|++.|.-+ +....+.+..+ .+.|..++..+.-.++.+ .+...... .|
T Consensus 78 ~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i--------------~~~g~~iGls~~~~t~~~--~~~~~~~~~~~D 141 (229)
T PLN02334 78 EDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQI--------------KSAGMKAGVVLNPGTPVE--AVEPVVEKGLVD 141 (229)
T ss_pred HHHHHHHHHcCCCEEEEeeccccchhHHHHHHHH--------------HHCCCeEEEEECCCCCHH--HHHHHHhccCCC
Confidence 45678889999999966554 11111111111 223555666654323333 22222234 78
Q ss_pred eEEE---e--CC--CCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HHHHHH
Q 018935 135 NIVI---D--LP--DWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAVLAL 199 (348)
Q Consensus 135 ~vvv---~--~~--DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~-~~v~~l 199 (348)
++.+ . +. .|....+|.+-. +... +..|.+ ..-. ..+.+-++++.|+||+++- .+|+ ..++++
T Consensus 142 yi~~~~v~pg~~~~~~~~~~~~~i~~-~~~~~~~~~I~a-~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 142 MVLVMSVEPGFGGQSFIPSMMDKVRA-LRKKYPELDIEV-DGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred EEEEEEEecCCCccccCHHHHHHHHH-HHHhCCCCcEEE-eCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHH
Confidence 8754 2 22 233334555432 2211 122322 2222 2446667889999999764 4565 344444
Q ss_pred HHhh
Q 018935 200 KEYF 203 (348)
Q Consensus 200 ~~~~ 203 (348)
++.+
T Consensus 219 ~~~~ 222 (229)
T PLN02334 219 RASV 222 (229)
T ss_pred HHHH
Confidence 4443
No 98
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=63.00 E-value=16 Score=35.37 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=61.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV 137 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~~~~~~~vv 137 (348)
-++.+..|-|+|+|++|+|+=-.|...++... .+..|-....++.- ++++.++.++......=|.+
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~v 170 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREA-------------AKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLV 170 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHH-------------HHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEE
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEee
Confidence 35688899999999999986222333333222 11223333334444 44555566665543322322
Q ss_pred E-eC-CCC-ee--eehhhhhhcccCCCc-eEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 138 I-DL-PDW-QV--IPAENIVASFQGSGK-TVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 138 v-~~-~DW-~i--IPlENliA~~q~~~~-~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
- .+ ++= +- -.+++.+..+..... -|+. .+++.++|+.+. .|+|||++-+.
T Consensus 171 s~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~----~~aDGvIVGSa 228 (259)
T PF00290_consen 171 SRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA----AGADGVIVGSA 228 (259)
T ss_dssp SSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH----TTSSEEEESHH
T ss_pred ccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH----ccCCEEEECHH
Confidence 1 01 111 12 246777777654432 2333 478888888765 89999999765
No 99
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=62.78 E-value=1.1e+02 Score=27.12 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.2
Q ss_pred HHHHHHHhCCcEEEEcCc
Q 018935 62 VMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 62 ~vT~ALEsG~~~~v~~~~ 79 (348)
.+..+.+.|+|.+.+..+
T Consensus 68 ~~~~~~~~Gad~i~vh~~ 85 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGV 85 (206)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 578899999999987764
No 100
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=62.23 E-value=10 Score=33.01 Aligned_cols=49 Identities=31% Similarity=0.405 Sum_probs=37.2
Q ss_pred CCceeEEEec--CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 278 GPVHAYVLVP--GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 278 GaVHaYv~~p--ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|-++=.+..- |.-|+||.+++.||+|.+-...|+... -.-..+|+++|=
T Consensus 54 ~~~~l~vk~~~~G~~s~~l~~~~~G~~v~i~gP~G~~~~-----~~~~~~~~v~ia 104 (223)
T cd00322 54 GELELTVKIVPGGPFSAWLHDLKPGDEVEVSGPGGDFFL-----PLEESGPVVLIA 104 (223)
T ss_pred CeEEEEEEEeCCCchhhHHhcCCCCCEEEEECCCccccc-----CcccCCcEEEEe
Confidence 5566666665 889999999999999999999998641 112457888874
No 101
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=62.09 E-value=51 Score=29.96 Aligned_cols=131 Identities=17% Similarity=0.261 Sum_probs=62.3
Q ss_pred EEEeCchhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh--hhh
Q 018935 54 WIWTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE--LQQ 125 (348)
Q Consensus 54 Wiw~~~K~~vT~ALEsG~~~~v~~~~~~------e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed--~e~ 125 (348)
|+=..+.+.+..|..+|+|.++++-||. +.++. .+... +..-......+ ...++.|.+.+. .+.
T Consensus 5 ~vp~~~~~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~--~~~~~----~~~~~~~~~~~--~~~~VRvn~~~~~~~~~ 76 (221)
T PF03328_consen 5 FVPANSPKMLEKAAASGADFVILDLEDGVPPDEKDEARE--DLAEA----LRSIRAARAAG--SEIIVRVNSLDSPHIER 76 (221)
T ss_dssp EEESTSHHHHHHHHTTCSSEEEEESSTTSSGGGHHHHHH--HHHHH----HHHHHHHTTSS--SEEEEE-SSTTCHHHHH
T ss_pred EEeCCCHHHHHHHHhcCCCEEEEeCcccCCcccchhhHH--HHHHH----HHhhccccccc--ccceecCCCCCcchhhh
Confidence 4444789999999999999999998762 12211 11000 00000011112 235555655332 111
Q ss_pred -hccccCCCCeEEEeCCCCeeeehhhhhhccc---------CCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCH
Q 018935 126 -LQPADGQAENIVIDLPDWQVIPAENIVASFQ---------GSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDV 193 (348)
Q Consensus 126 -~~~~~~~~~~vvv~~~DW~iIPlENliA~~q---------~~~~~l~a~v~~~~eA~~al~~LE~-G~DGVvl~~~d~ 193 (348)
+.......+.+++-.- =+.=-++.+++.+. +.++.+++.+.|++--.-+-+++.. |+||+.+-+.|.
T Consensus 77 Dl~~l~~g~~gI~lP~v-es~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dl 154 (221)
T PF03328_consen 77 DLEALDAGADGIVLPKV-ESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADL 154 (221)
T ss_dssp HHHHHHTTSSEEEETT---SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHH
T ss_pred hhhhcccCCCeeecccc-CcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHH
Confidence 1112224555555110 00011222333322 1245677777777666666666654 777777776654
No 102
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=61.74 E-value=96 Score=28.05 Aligned_cols=97 Identities=24% Similarity=0.411 Sum_probs=56.7
Q ss_pred eEEEEEEEEEcCCcc-eEEEeec----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEE
Q 018935 216 MKATVTRVDVAGMGD-RVCVDLC----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVL 285 (348)
Q Consensus 216 ~~atVt~V~~vGmGd-RVCVDtc----sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaYv~ 285 (348)
-.++|++++++.-.- ++++..- --++||+=+.+. .+ ++-..|||-+- .|-++=++.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~----------~~----~~~~~r~ySi~s~~~~~~~l~l~i~ 72 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQ----------AP----GYEGTRAFSIASSPSDAGEIELHIR 72 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEE----------cC----CCCCccccccCCCCCCCCEEEEEEE
Confidence 368888998886322 1233321 134555544432 11 11135777763 244555555
Q ss_pred e-cCC-ceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 286 V-PGG-KTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 286 ~-pgg-kT~YLS-EL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
. |+| -|+||. .|+.||.|.+....|+.... .-..+|+++|=
T Consensus 73 ~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~~v~ia 116 (238)
T cd06211 73 LVPGGIATTYVHKQLKEGDELEISGPYGDFFVR-----DSDQRPIIFIA 116 (238)
T ss_pred ECCCCcchhhHhhcCCCCCEEEEECCccceEec-----CCCCCCEEEEe
Confidence 4 566 599995 79999999999999875211 11237888874
No 103
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=61.42 E-value=40 Score=31.61 Aligned_cols=113 Identities=9% Similarity=0.060 Sum_probs=60.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEEE
Q 018935 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~~~~~~~~~vvv 138 (348)
.+.+..+.++|+++++++.-+.|...++-+. .++.|...+.++.-. +.+.++.+... ..+++.+
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~~-------------~~~~g~~~i~~i~P~T~~~~i~~i~~~--~~~~vy~ 158 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFREA-------------AKEYGLDLIFLVAPTTPDERIKKIAEL--ASGFIYY 158 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHhh--CCCCEEE
Confidence 6789999999999999976544332222211 123343334433333 34455555442 2344444
Q ss_pred eC----C-CCe--eeehhhhhhcccCCCce---EEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 139 DL----P-DWQ--VIPAENIVASFQGSGKT---VFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 139 ~~----~-DW~--iIPlENliA~~q~~~~~---l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
-. . ..+ .-+..+.|..+.+.... +=..+++.++++. +.+. +||+++-+.
T Consensus 159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~---~~~~-ADgvVvGSa 217 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAE---VAKY-ADGVIVGSA 217 (242)
T ss_pred EeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHH---HHcc-CCEEEECHH
Confidence 22 1 122 12345666666543222 2234566666655 5677 999999753
No 104
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=61.26 E-value=11 Score=34.39 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=25.9
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~ 77 (348)
.+...+|+|| .+++.+..+++.|+|+|+.+
T Consensus 202 ~~gl~v~~wTvn~~~~~~~l~~~gvdgiiTD 232 (234)
T cd08570 202 KNGKKVFVWTVNTEEDMRYAIRLGVDGVITD 232 (234)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEEeC
Confidence 4577899999 56999999999999999865
No 105
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=60.99 E-value=68 Score=28.10 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=41.2
Q ss_pred CCCeEEEeCCCCee--eehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQV--IPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~i--IPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..|-++++..-+.. ..--+++..++ .....++..... ++......+++.|++|.+.++.++.++.+.
T Consensus 49 ~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~-~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~a 119 (216)
T PRK10840 49 DAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMN-NNPAILSAVLDLDIEGIVLKQGAPTDLPKA 119 (216)
T ss_pred CCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEec-CCHHHHHHHHHCCCeEEEECCCCHHHHHHH
Confidence 45777775432110 12223444443 234566665544 455667788999999999999998876543
No 106
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=60.97 E-value=35 Score=30.80 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCc
Q 018935 58 ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
.+.+-+..+++.|++.+++...
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECch
Confidence 5788899999999999998863
No 107
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=60.55 E-value=64 Score=25.60 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=59.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 018935 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (348)
+.++..-.+.|++-++++.+ .+.++++..- |. -..+...++++.++++-. ..++.+|+.
T Consensus 11 ~~i~~~L~~~~~~vvvid~d-~~~~~~~~~~-----------------~~-~~i~gd~~~~~~l~~a~i--~~a~~vv~~ 69 (116)
T PF02254_consen 11 REIAEQLKEGGIDVVVIDRD-PERVEELREE-----------------GV-EVIYGDATDPEVLERAGI--EKADAVVIL 69 (116)
T ss_dssp HHHHHHHHHTTSEEEEEESS-HHHHHHHHHT-----------------TS-EEEES-TTSHHHHHHTTG--GCESEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECC-cHHHHHHHhc-----------------cc-ccccccchhhhHHhhcCc--cccCEEEEc
Confidence 44455555555566666654 3344433322 11 123344566666666543 367788886
Q ss_pred CCCCeeeehhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 018935 140 LPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 140 ~~DW~iIPlENliA~~----q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
..|. -+|+.+.. .....++++.+.+.+.++.+-. .|+|-|+.
T Consensus 70 ~~~d----~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~---~g~d~vi~ 115 (116)
T PF02254_consen 70 TDDD----EENLLIALLARELNPDIRIIARVNDPENAELLRQ---AGADHVIS 115 (116)
T ss_dssp SSSH----HHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH---TT-SEEEE
T ss_pred cCCH----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH---CCcCEEEC
Confidence 6654 56654421 1335799999999999888744 89998875
No 108
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=60.38 E-value=77 Score=35.05 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=69.4
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~--~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
++-.|-.|-..|+|+|+.--.- .+..+++-+.+ ..-|- -++++|-+.+|++.+... .++.+
T Consensus 122 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a-------------~~lGm--e~LvEvh~~~el~~a~~~--ga~ii 184 (695)
T PRK13802 122 TDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLA-------------HELGM--TVLVETHTREEIERAIAA--GAKVI 184 (695)
T ss_pred CHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHH-------------HHcCC--eEEEEeCCHHHHHHHHhC--CCCEE
Confidence 4667788889999998754310 11111111110 11132 278899999998886553 46677
Q ss_pred EEeCCCCe--eeehh---hhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEe-----cCCHHH-HHHHH
Q 018935 137 VIDLPDWQ--VIPAE---NIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLK-----VEDVKA-VLALK 200 (348)
Q Consensus 137 vv~~~DW~--iIPlE---NliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~~~-v~~l~ 200 (348)
=|+-+|-+ .|-++ +|...+.. +.-+|+ -+++++|++.+. +.|+||||+- .+||.. +++|.
T Consensus 185 GINnRdL~tf~vd~~~t~~L~~~ip~-~~~~VsESGI~~~~d~~~l~---~~G~davLIGeslm~~~dp~~~~~~l~ 257 (695)
T PRK13802 185 GINARNLKDLKVDVNKYNELAADLPD-DVIKVAESGVFGAVEVEDYA---RAGADAVLVGEGVATADDHELAVERLV 257 (695)
T ss_pred EEeCCCCccceeCHHHHHHHHhhCCC-CcEEEEcCCCCCHHHHHHHH---HCCCCEEEECHHhhCCCCHHHHHHHHH
Confidence 78887655 33333 33333321 222333 356778877665 6999999974 466643 44443
No 109
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=60.33 E-value=35 Score=35.05 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=70.1
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 018935 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vv 137 (348)
++.+.+.+.+|.|+|.|.++.-|-.....+..|..|..-+ + +..+. ...|.++++...+.. ..+|.+.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~-------~--~~~vi-~G~v~t~~~a~~l~~--aGad~i~ 291 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTY-------P--DLDII-AGNVATAEQAKALID--AGADGLR 291 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhC-------C--CCCEE-EEeCCCHHHHHHHHH--hCCCEEE
Confidence 4578888999999999999874321112222222222100 0 12222 247788888666554 2566665
Q ss_pred Ee-C----------CCCee---eehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 138 ID-L----------PDWQV---IPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 138 v~-~----------~DW~i---IPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
+. . .+|-+ =.+.++...++..+..||+ .+++..|+..+ |+.|+|.|++-+-
T Consensus 292 vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kA---la~GA~~V~~G~~ 358 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKA---LAAGADAVMLGSL 358 (450)
T ss_pred ECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH---HHcCCCEEEECch
Confidence 42 1 13433 2334444444555678999 89999997655 5679999998653
No 110
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=60.02 E-value=53 Score=27.26 Aligned_cols=17 Identities=18% Similarity=0.050 Sum_probs=14.4
Q ss_pred HHHHHhCCcEEEEcCcc
Q 018935 64 TAAVERGWNTFVFLSEN 80 (348)
Q Consensus 64 T~ALEsG~~~~v~~~~~ 80 (348)
..+.+.|+|.+.+...+
T Consensus 78 ~~~~~~g~d~v~l~~~~ 94 (200)
T cd04722 78 AAARAAGADGVEIHGAV 94 (200)
T ss_pred HHHHHcCCCEEEEeccC
Confidence 48899999999988764
No 111
>PRK09206 pyruvate kinase; Provisional
Probab=60.00 E-value=28 Score=36.56 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=86.7
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
.||+.+.-|++-|+|.|-..- .+++.++++.++ +... ++.+..+.+|.+++.++.+..-+...|-
T Consensus 173 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 173 KDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREH-------------LKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 478889999999999654432 123444444333 2222 2456788899999998887776666888
Q ss_pred EEEeCCC-Ceeeehhhhhhc-------ccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 018935 136 IVIDLPD-WQVIPAENIVAS-------FQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (348)
Q Consensus 136 vvv~~~D-W~iIPlENliA~-------~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (348)
+.|---| .-=+|.|.+.+. +...+.-+|. ...+-.|+--.+.+..-|+|+|+|..+.
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 8884444 344667766542 2222222333 1345578888899999999999996654
Q ss_pred --HHHHHHHHHhhcc
Q 018935 193 --VKAVLALKEYFDG 205 (348)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 320 yPveaV~~m~~I~~~ 334 (470)
T PRK09206 320 YPLEAVSIMATICER 334 (470)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3566666777643
No 112
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=59.97 E-value=80 Score=30.13 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=56.3
Q ss_pred eeeeeEEEEEEEEEcCCcc-----eEEEeecCCCCCCceEEEeccCceEEE-EeeccccCCCCCCCCeeeec----CCce
Q 018935 212 LLSLMKATVTRVDVAGMGD-----RVCVDLCSLMRPGEGLLVGSFARGLFL-VHSECLESNYIASRPFRVNA----GPVH 281 (348)
Q Consensus 212 ~l~L~~atVt~V~~vGmGd-----RVCVDtcsll~~GEGmLVGS~S~glFL-VhsEt~es~Yva~RPFRVNA----GaVH 281 (348)
.....+++|++.+++.-++ ++++-.-.-.+ +|.-.-++..|=|+ |... .-.-.|||-+-- |-+.
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~pGQ~v~v~~~----g~~~~R~YSias~p~~g~l~ 115 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKL--SGKGLPSFEAGDLLGILPP----GSDVPRFYSLASSSSDGFLE 115 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCccc--ccCCCCCcCccCEEEEecC----CCCCCceEecCCCCCCCeEE
Confidence 4467788999999887533 34443221000 01111122222222 2111 111236666532 3344
Q ss_pred eEEEe-cC-CceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEeeccceeEEE
Q 018935 282 AYVLV-PG-GKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 282 aYv~~-pg-gkT~YLSEL~aG~eVLvV-d~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
=.|.. |+ --|.||.+|+.||+|-+. ...|.-.. +-..+|+++|=
T Consensus 116 l~Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~------~~~~~~lvlIA 162 (289)
T cd06201 116 ICVRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRP------AKGAAPVILIG 162 (289)
T ss_pred EEEEeCCCccchhhHhhCCCcCEEEEEeccCCCccC------CCCCCCEEEEe
Confidence 44543 44 457899999999999875 45665431 22458888883
No 113
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=59.53 E-value=11 Score=36.52 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=35.0
Q ss_pred CCceeEEEe-cCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 278 GPVHAYVLV-PGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 278 GaVHaYv~~-pggk-T~YL-SEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|-..=+|.. |+|+ |.|| +.|+.||.|.+-...|+.. . .-+.+|+++|=
T Consensus 166 ~~l~~~ik~~~~G~~s~~L~~~l~~G~~v~i~gP~G~f~---l---~~~~~~~vlia 216 (340)
T PRK11872 166 NQLQFLIRLLPDGVMSNYLRERCQVGDEILFEAPLGAFY---L---REVERPLVFVA 216 (340)
T ss_pred CeEEEEEEECCCCcchhhHhhCCCCCCEEEEEcCcceeE---e---CCCCCcEEEEe
Confidence 445555554 7776 7899 5799999999999999753 1 12358999884
No 114
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=59.23 E-value=31 Score=33.72 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=21.7
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 018935 165 ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (348)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~~v 196 (348)
.+.+++||+.+ +|.|+|||++.+ +||..+
T Consensus 183 GI~tpeda~~A---melGAdgVlV~SAIt~a~dP~~m 216 (248)
T cd04728 183 GIGTPSDAAQA---MELGADAVLLNTAIAKAKDPVAM 216 (248)
T ss_pred CCCCHHHHHHH---HHcCCCEEEEChHhcCCCCHHHH
Confidence 36788888765 569999999865 566654
No 115
>PRK00208 thiG thiazole synthase; Reviewed
Probab=59.07 E-value=33 Score=33.60 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=22.0
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHH
Q 018935 165 ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVL 197 (348)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~~v~ 197 (348)
.+.+++||..+ +|.|+|||++.+ +||..+.
T Consensus 183 GI~tpeda~~A---melGAdgVlV~SAItka~dP~~ma 217 (250)
T PRK00208 183 GIGTPSDAAQA---MELGADAVLLNTAIAVAGDPVAMA 217 (250)
T ss_pred CCCCHHHHHHH---HHcCCCEEEEChHhhCCCCHHHHH
Confidence 46788888765 568999999865 5676543
No 116
>PRK04302 triosephosphate isomerase; Provisional
Probab=58.34 E-value=81 Score=29.00 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=52.8
Q ss_pred HHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCC
Q 018935 63 MTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP 141 (348)
Q Consensus 63 vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~ 141 (348)
+..+-+.|+|+++++. +....-.++.++-. .....|-. .++.+.+.++++.+... ..+++-++..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~----------~a~~~Gl~--~I~~v~~~~~~~~~~~~--~~~~I~~~p~ 143 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVE----------RAKKLGLE--SVVCVNNPETSAAAAAL--GPDYVAVEPP 143 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHH----------HHHHCCCe--EEEEcCCHHHHHHHhcC--CCCEEEEeCc
Confidence 7777889999999875 21111111111000 00111221 23455555555544321 3455555432
Q ss_pred CCee---ee--------hhhhhhcccC--CCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 142 DWQV---IP--------AENIVASFQG--SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 142 DW~i---IP--------lENliA~~q~--~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
|-+ .+ ++.+++.+.. .+..|++ .+++.++++. +++.|+|||++-+
T Consensus 144 -~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~---~~~~gadGvlVGs 203 (223)
T PRK04302 144 -ELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKA---ALELGADGVLLAS 203 (223)
T ss_pred -cccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHH---HHcCCCCEEEEeh
Confidence 311 11 3344444432 2345554 3456666555 5789999998754
No 117
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=58.11 E-value=96 Score=29.86 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=52.8
Q ss_pred eeeeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCee-eec----CCc
Q 018935 212 LLSLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFR-VNA----GPV 280 (348)
Q Consensus 212 ~l~L~~atVt~V~~vGmGd-RVCVDtc-----sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFR-VNA----GaV 280 (348)
.-....++|++++++.-.= ..++..- --+.||+=+.+. +..+....+..-.|||. ++. |-.
T Consensus 30 ~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~--------~~~~~~~~~~~~~R~YS~~s~~~~~~~i 101 (300)
T PTZ00319 30 PDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFR--------CDCTTPGKPETVQHSYTPISSDDEKGYV 101 (300)
T ss_pred cCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEE--------EEeCCCCccceEEeeeccCCCcccCCEE
Confidence 4455678999999886432 3455321 124455533322 22211111223345554 333 333
Q ss_pred eeEEEe---------c--CCceeeeeeccCCCeEEEEcCCCCe
Q 018935 281 HAYVLV---------P--GGKTCYLSELKSGKEVIVVDQKGRQ 312 (348)
Q Consensus 281 HaYv~~---------p--ggkT~YLSEL~aG~eVLvVd~~G~t 312 (348)
.=+|.. | |.-|+||..|+.||+|.+-...|+.
T Consensus 102 ~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f 144 (300)
T PTZ00319 102 DFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKF 144 (300)
T ss_pred EEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceee
Confidence 334443 2 7788999999999999998888865
No 118
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=58.05 E-value=30 Score=34.72 Aligned_cols=114 Identities=14% Similarity=0.223 Sum_probs=64.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH----------HHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK----------AVLALKE 201 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~----------~v~~l~~ 201 (348)
+.+.+++.+-++. + +.+++..+.+++..|.|+++|+.+ ++.|+|+|++.-...+ -+.++.+
T Consensus 82 ~v~~V~~~~G~P~----~--~~~lk~~Gi~v~~~v~s~~~A~~a---~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~ 152 (320)
T cd04743 82 KPTFALIAGGRPD----Q--ARALEAIGISTYLHVPSPGLLKQF---LENGARKFIFEGRECGGHVGPRSSFVLWESAID 152 (320)
T ss_pred CCcEEEEcCCChH----H--HHHHHHCCCEEEEEeCCHHHHHHH---HHcCCCEEEEecCcCcCCCCCCCchhhHHHHHH
Confidence 4455555444332 2 466777788999999999999774 5789999998765331 1111111
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCC-----C--ceEEEeccCceEEEEeeccc
Q 018935 202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRP-----G--EGLLVGSFARGLFLVHSECL 263 (348)
Q Consensus 202 ~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~-----G--EGmLVGS~S~glFLVhsEt~ 263 (348)
.+. .... +.....|-=|-.=|++|-=-+...-.|.- | +|+.+|+ -||...|+.
T Consensus 153 ~l~---~~~~--~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGT----rFl~t~Es~ 212 (320)
T cd04743 153 ALL---AANG--PDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGT----AYLFTEEAV 212 (320)
T ss_pred HHH---Hhhc--ccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEcc----HHhcchhhc
Confidence 110 0000 00000121122337877654444444544 4 8999996 488888874
No 119
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=58.03 E-value=18 Score=33.44 Aligned_cols=84 Identities=18% Similarity=0.054 Sum_probs=50.2
Q ss_pred EEEEecChhhhhhhccccCC--CCeEEEeCCCCeeeehhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 113 SIIEVSTPQELQQLQPADGQ--AENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 113 ~~~~v~~~ed~e~~~~~~~~--~~~vvv~~~DW~iIPlENliA~~q~~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
.++...++++...++..+-. ...+=+..+++ .....|+++... +..++-.+.+.=....+-.+++.|+|+++..
T Consensus 14 ~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 14 AILRGITPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred EEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 44466678877776665543 44444444444 444455555332 2235545555444445556788999999999
Q ss_pred cCCHHHHHHH
Q 018935 190 VEDVKAVLAL 199 (348)
Q Consensus 190 ~~d~~~v~~l 199 (348)
..|++.++..
T Consensus 91 ~~~~~v~~~~ 100 (206)
T PRK09140 91 NTDPEVIRRA 100 (206)
T ss_pred CCCHHHHHHH
Confidence 8888766543
No 120
>PRK06354 pyruvate kinase; Provisional
Probab=57.83 E-value=31 Score=37.19 Aligned_cols=135 Identities=16% Similarity=0.235 Sum_probs=88.5
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccc-cCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVY-DSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~-~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
+|++.+.-|++-|+|.|-+.- .+++.++++.++ + ...++.+..+.+|.+++.++.+-.-....|-
T Consensus 179 kD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeI~~~~Dg 245 (590)
T PRK06354 179 KDREDLIFGLEQGVDWIALSFVRNPSDVLEIREL-------------IEEHNGKHIPIIAKIEKQEAIDNIDAILELCDG 245 (590)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHhcCCCceEEEEECCHHHHHhHHHHHHhcCE
Confidence 578889999999999765542 234444444443 2 1124556788899999998887776666888
Q ss_pred EEEeCCC-Ceeeehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 018935 136 IVIDLPD-WQVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (348)
Q Consensus 136 vvv~~~D-W~iIPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (348)
++|---| .-=+|.|.+-+ .+...+.-+|.. ..+-.|+--.+.+..-|+|+|+|..+.
T Consensus 246 ImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~ 325 (590)
T PRK06354 246 LMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGD 325 (590)
T ss_pred EEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCC
Confidence 8884444 33456665533 322223333331 334578888889999999999999653
Q ss_pred --HHHHHHHHHhhcc
Q 018935 193 --VKAVLALKEYFDG 205 (348)
Q Consensus 193 --~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 326 yPveaV~~m~~I~~~ 340 (590)
T PRK06354 326 YPVEAVQTMATIAVR 340 (590)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3667777777653
No 121
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=57.82 E-value=8.3 Score=41.08 Aligned_cols=31 Identities=13% Similarity=0.397 Sum_probs=25.4
Q ss_pred eeccCCCeEEEEcCCCCeeEEeeeeEEeeccce
Q 018935 295 SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (348)
Q Consensus 295 SEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPL 327 (348)
.++++||||+|||.+|+. .-|||+++--+-|
T Consensus 495 ~~IR~~dEV~vv~~~~~l--lavGra~lsg~em 525 (540)
T TIGR00432 495 NNIRANDEVLIVNADDEL--LATGKALLCAEEM 525 (540)
T ss_pred CCCCCCCeEEEEcCCCcE--EEEEehhcCHHHH
Confidence 479999999999999855 7899998754444
No 122
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=57.80 E-value=1.3e+02 Score=27.00 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=28.4
Q ss_pred CCceeee-eeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 288 GGKTCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 288 ggkT~YL-SEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|.-|+|| ..|+.||.|.+-...|.... .-+.+|+++|=
T Consensus 69 G~~s~~l~~~l~~G~~v~i~gP~G~~~~------~~~~~~~llia 107 (227)
T cd06213 69 GAFSGWLFGADRTGERLTVRGPFGDFWL------RPGDAPILCIA 107 (227)
T ss_pred CcchHHHHhcCCCCCEEEEeCCCcceEe------CCCCCcEEEEe
Confidence 4458999 66999999999999997532 11347888874
No 123
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=57.74 E-value=14 Score=35.74 Aligned_cols=164 Identities=14% Similarity=0.199 Sum_probs=96.7
Q ss_pred chhHHHHHHHhCCcEEEEcCc------chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 018935 59 SKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~------~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (348)
-.++...--+.|+.++=+-.| +.+..+...+...+ |+.-+|. |-++.++.++.. ..
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~-PvL~KDF---------------Iid~~QI~ea~~--~G 124 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKI-PVLRKDF---------------ILDEIQIREARA--FG 124 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCC-CEEeccc---------------cCCHHHHHHHHH--cC
Confidence 356677777888998644432 23333333332111 4333322 456777666554 35
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccce
Q 018935 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNL 212 (348)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~~~~~~~~~ 212 (348)
+|-+++-..--+---|++++..++.-+-..+.+|+|.+|++.++. .|++-|-+...|.....--..... .-
T Consensus 125 ADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~---~ga~iiGINnRdL~t~~vd~~~~~------~L 195 (247)
T PRK13957 125 ASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALD---CGAEIIGINTRDLDTFQIHQNLVE------EV 195 (247)
T ss_pred CCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHh---CCCCEEEEeCCCCccceECHHHHH------HH
Confidence 677777555444334889999888888899999999999998654 699999898887653210000000 01
Q ss_pred eeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEecc
Q 018935 213 LSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSF 251 (348)
Q Consensus 213 l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGS~ 251 (348)
.++.+..+..|..=|+..+--+.-.. +--.|+|||.+
T Consensus 196 ~~~ip~~~~~IsESGI~t~~d~~~l~--~~~davLvG~~ 232 (247)
T PRK13957 196 AAFLPPNIVKVGESGIESRSDLDKFR--KLVDAALIGTY 232 (247)
T ss_pred HhhCCCCcEEEEcCCCCCHHHHHHHH--HhCCEEEECHH
Confidence 22233445667777877654333322 22578999875
No 124
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=57.44 E-value=1.2e+02 Score=28.34 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=63.8
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhh
Q 018935 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL 123 (348)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~v~~~~~------~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~ 123 (348)
.+|++- ++.+-+...|+.|++.+++...- .+.+++.++=..+--|-..+|... ..-...+++++
T Consensus 80 ~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~--------~~~~~~~~~~~ 151 (233)
T cd04723 80 GLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLL--------KPTDFIGPEEL 151 (233)
T ss_pred CEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeec--------cccCcCCHHHH
Confidence 367766 57899999999999999988642 222333433111111222333222 00012344444
Q ss_pred hhhccccCCCCeEEEeCCCC----eeeehhhhhhccc-CCCceEE--EEcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 124 QQLQPADGQAENIVIDLPDW----QVIPAENIVASFQ-GSGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 124 e~~~~~~~~~~~vvv~~~DW----~iIPlENliA~~q-~~~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
.+..... .+.+++..-|= +=..+ .++.++. .....++ ..+++.++++.++. .|++||++-+
T Consensus 152 ~~~~~~~--~~~li~~di~~~G~~~g~~~-~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~---~G~~~vivGs 219 (233)
T cd04723 152 LRRLAKW--PEELIVLDIDRVGSGQGPDL-ELLERLAARADIPVIAAGGVRSVEDLELLKK---LGASGALVAS 219 (233)
T ss_pred HHHHHHh--CCeEEEEEcCccccCCCcCH-HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH---cCCCEEEEeh
Confidence 3332222 44444432211 11122 2222221 1222333 45899999997765 5999999865
No 125
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=57.43 E-value=51 Score=34.26 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=63.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 018935 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (348)
+.+...-.+.|.+-++++++ .++++++.+.+ .. ..+.+.++++-++++-. .+++.+++.
T Consensus 430 ~~la~~L~~~g~~vvvId~d-~~~~~~~~~~g-----------------~~-~i~GD~~~~~~L~~a~i--~~a~~viv~ 488 (558)
T PRK10669 430 SLLGEKLLAAGIPLVVIETS-RTRVDELRERG-----------------IR-AVLGNAANEEIMQLAHL--DCARWLLLT 488 (558)
T ss_pred HHHHHHHHHCCCCEEEEECC-HHHHHHHHHCC-----------------Ce-EEEcCCCCHHHHHhcCc--cccCEEEEE
Confidence 55555555678888888765 45555554331 11 23444566666555433 367878876
Q ss_pred CCCCeeeehhh--hhh--cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 140 LPDWQVIPAEN--IVA--SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 140 ~~DW~iIPlEN--liA--~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
..|. -+| ++. .......++++.++|.++.+.. .+.|+|-|+.+.+
T Consensus 489 ~~~~----~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l---~~~Gad~vv~p~~ 537 (558)
T PRK10669 489 IPNG----YEAGEIVASAREKRPDIEIIARAHYDDEVAYI---TERGANQVVMGER 537 (558)
T ss_pred cCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH---HHcCCCEEEChHH
Confidence 6554 233 221 1223456899999999888876 4689998884433
No 126
>PRK15452 putative protease; Provisional
Probab=57.33 E-value=1.1e+02 Score=31.80 Aligned_cols=136 Identities=10% Similarity=0.101 Sum_probs=72.0
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-Chhhhhhhc
Q 018935 52 RVWIWTESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQ 127 (348)
Q Consensus 52 ~vWiw~~~K~~vT~ALEsG~~~~v~~~~~---~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~ed~e~~~ 127 (348)
++-+...+-+.+.+|++.|+|+|.+.-+. ...+..+.. .-+ .+.-+.....|+++.+-+... ..++++.+.
T Consensus 5 eLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~-edl----~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH-ENL----ALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCH-HHH----HHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 45567788999999999999999995421 000000000 000 000012244566654433333 233443333
Q ss_pred ccc----C-CCCeEEEeCCCCeeeehhhhhhcccCCCceEE----EEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHH
Q 018935 128 PAD----G-QAENIVIDLPDWQVIPAENIVASFQGSGKTVF----AISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVL 197 (348)
Q Consensus 128 ~~~----~-~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~----a~v~~~~eA~~al~~LE~G~DGVvl~~~-d~~~v~ 197 (348)
... . ..|-+|+ .||-+|-+ +.+. ..+..|. +.+.|...++.+ .+.|+++|+|.++ +.+||+
T Consensus 80 ~~l~~l~~~gvDgvIV--~d~G~l~~---~ke~-~p~l~ih~stqlni~N~~a~~f~---~~lG~~rvvLSrELsl~EI~ 150 (443)
T PRK15452 80 RDLEPVIAMKPDALIM--SDPGLIMM---VREH-FPEMPIHLSVQANAVNWATVKFW---QQMGLTRVILSRELSLEEIE 150 (443)
T ss_pred HHHHHHHhCCCCEEEE--cCHHHHHH---HHHh-CCCCeEEEEecccCCCHHHHHHH---HHCCCcEEEECCcCCHHHHH
Confidence 222 1 3566776 45665522 2211 1122333 335666666655 4679999999998 468887
Q ss_pred HHHH
Q 018935 198 ALKE 201 (348)
Q Consensus 198 ~l~~ 201 (348)
++++
T Consensus 151 ~i~~ 154 (443)
T PRK15452 151 EIRQ 154 (443)
T ss_pred HHHh
Confidence 7653
No 127
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.75 E-value=24 Score=35.73 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=34.0
Q ss_pred CCCeEEEeCC-----------CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 132 QAENIVIDLP-----------DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 132 ~~~~vvv~~~-----------DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
.++.++++++ +|.. +-.++.+ .+..|++ .+.+.++|+.++ +.|+|+|++-
T Consensus 154 Gvd~I~vhgrt~~~~h~~~~~~~~~--i~~~ik~---~~ipVIaG~V~t~e~A~~l~---~aGAD~V~VG 215 (368)
T PRK08649 154 GVDLFVIQGTVVSAEHVSKEGEPLN--LKEFIYE---LDVPVIVGGCVTYTTALHLM---RTGAAGVLVG 215 (368)
T ss_pred CCCEEEEeccchhhhccCCcCCHHH--HHHHHHH---CCCCEEEeCCCCHHHHHHHH---HcCCCEEEEC
Confidence 6899999764 4533 3344443 4567777 777777776655 5899999875
No 128
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=56.36 E-value=11 Score=37.30 Aligned_cols=62 Identities=29% Similarity=0.424 Sum_probs=42.0
Q ss_pred CCCCCCCCeeeec------CCceeEEEe-----------cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccce
Q 018935 265 SNYIASRPFRVNA------GPVHAYVLV-----------PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (348)
Q Consensus 265 s~Yva~RPFRVNA------GaVHaYv~~-----------pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPL 327 (348)
.|...+|||-+-. |-+|=.|.. +|--|.||++|+.||+|-+.-..|.-+.- .-..+|+
T Consensus 159 lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp-----~~~~~pl 233 (382)
T cd06207 159 CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLP-----KDPKKPI 233 (382)
T ss_pred CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCC-----CCCCCCE
Confidence 3777788888743 334444432 25567999999999999998877754211 1126899
Q ss_pred eEEE
Q 018935 328 ILVE 331 (348)
Q Consensus 328 lLIe 331 (348)
++|=
T Consensus 234 ImIa 237 (382)
T cd06207 234 IMVG 237 (382)
T ss_pred EEEc
Confidence 9984
No 129
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=56.16 E-value=1.6e+02 Score=27.29 Aligned_cols=114 Identities=5% Similarity=0.045 Sum_probs=61.0
Q ss_pred CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 018935 58 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~--~~v~~~~~-----~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (348)
.+.+-+..|.+.|+| +|||.+.. .+.++++.+. +++.-+.|+++ .-.+++++.+++...
T Consensus 9 t~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~-------------~~~~~~~VgVf-~~~~~~~i~~~~~~~ 74 (207)
T PRK13958 9 TTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASA-------------VPNHIDKVCVV-VNPDLTTIEHILSNT 74 (207)
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHh-------------CCCCCCEEEEE-eCCCHHHHHHHHHhC
Confidence 356778899999999 58875433 3555555442 11223456666 334666666666544
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
.-+.+-+++.-. . ..++.+... .-+++....--++....+.-.+..+|.+||++.
T Consensus 75 -~~d~vQLHG~e~----~-~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~ 131 (207)
T PRK13958 75 -SINTIQLHGTES----I-DFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTP 131 (207)
T ss_pred -CCCEEEECCCCC----H-HHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCC
Confidence 457888877522 2 233443321 135555543311111111222335899999973
No 130
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=55.85 E-value=19 Score=27.90 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=28.5
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEee
Q 018935 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (348)
Q Consensus 284 v~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE 323 (348)
=+++.|=+.+=.+++.||.|.++|.+| +..-+||+..-
T Consensus 18 ~L~~~GV~~~~~~f~~gd~V~i~~~~g--~~ia~G~a~~s 55 (74)
T PF01472_consen 18 SLFAPGVVEVDGDFRKGDEVAIVDEDG--EVIAVGRANMS 55 (74)
T ss_dssp EEEGGGEEEEETT--TTSEEEEEETTS--SEEEEEEESST
T ss_pred CcchHHhEECCCCcCCCCEEEEEcCCC--eEEEEEEEecC
Confidence 345677888888899999999999997 44778887654
No 131
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=55.72 E-value=1e+02 Score=27.63 Aligned_cols=96 Identities=23% Similarity=0.354 Sum_probs=56.1
Q ss_pred EEEEEEEEEcCCcc-eEEEeecC----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCceeEEEe
Q 018935 217 KATVTRVDVAGMGD-RVCVDLCS----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHAYVLV 286 (348)
Q Consensus 217 ~atVt~V~~vGmGd-RVCVDtcs----ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNA-----GaVHaYv~~ 286 (348)
+++|++++.+.-+- ++++.... -+.||+=+.+- +... -..|||-+-. |-+.=++..
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~--------~~~~------~~~r~ySi~s~~~~~~~l~l~vk~ 67 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDIT--------VPGT------EETRSFSMANTPADPGRLEFIIKK 67 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEE--------cCCC------CcccccccCCCCCCCCEEEEEEEE
Confidence 47888888875543 23444221 24455544432 1111 1346666532 334444544
Q ss_pred -cCCc-eeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 287 -PGGK-TCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 287 -pggk-T~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|+|. |.||.+ |+.||.|.+-...|+...- +.+.+|+++|=
T Consensus 68 ~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~~l~ia 110 (232)
T cd06212 68 YPGGLFSSFLDDGLAVGDPVTVTGPYGTCTLR-----ESRDRPIVLIG 110 (232)
T ss_pred CCCCchhhHHhhcCCCCCEEEEEcCcccceec-----CCCCCcEEEEe
Confidence 5554 899986 9999999999988866421 12457888774
No 132
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.35 E-value=28 Score=34.07 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=34.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
..+|..++.|.+||+.+ ++.|+|.|+|.+-++++++++.+.+
T Consensus 189 ~~~I~VEv~tleea~eA---~~~gaD~I~LD~~~~e~l~~~v~~~ 230 (277)
T PRK05742 189 GKPVEVEVESLDELRQA---LAAGADIVMLDELSLDDMREAVRLT 230 (277)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35799999999997665 5889999999999999888877654
No 133
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=55.35 E-value=16 Score=33.35 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=25.6
Q ss_pred ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 018935 290 KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (348)
Q Consensus 290 kT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvK 321 (348)
.-++|.+|+.||+|.+.+.+|+.++=-|=+++
T Consensus 102 ~F~~L~~L~~GD~I~v~~~~g~~~~Y~V~~~~ 133 (174)
T TIGR03784 102 HFAFLQELRPGDVIRLQTPDGQWQSYQVTATR 133 (174)
T ss_pred cCCChhhCCCCCEEEEEECCCeEEEEEEeEEE
Confidence 36789999999999999999987655454444
No 134
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce [] revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This domain corresponds to the protein-splicing domain.; GO: 0030908 protein splicing; PDB: 1LWT_A 1UM2_B 1JVA_B 1GPP_A 1VDE_A 1EF0_B 1DFA_A 1LWS_A.
Probab=55.29 E-value=13 Score=35.08 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=22.5
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEE
Q 018935 283 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTA 315 (348)
Q Consensus 283 Yv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~ 315 (348)
=|+|.||..+=..+++.||+||. .||+.|++
T Consensus 7 ~vlmaDG~~k~ie~i~~Gd~vmg--~dg~~r~V 37 (215)
T PF05203_consen 7 RVLMADGSIKPIEDIKIGDQVMG--PDGRPRRV 37 (215)
T ss_dssp EEEBTTS-EEEGGG--TT-EEEB--TTSSEEEE
T ss_pred EEEecCCCeeEEeecccCCEEEC--CCCCcEEE
Confidence 48999999999999999999875 67777654
No 135
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=55.00 E-value=94 Score=28.94 Aligned_cols=111 Identities=16% Similarity=0.243 Sum_probs=63.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch---------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcc
Q 018935 58 ESKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQP 128 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~~---------e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~ 128 (348)
+--+++....+.|++.+.+-.-++ +.++++.+... -|+.+.+| |.+.+|.+.+..
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~-ipv~~~GG---------------i~s~~~~~~~l~ 94 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVF-IPLTVGGG---------------IRSVEDARRLLR 94 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCC-CCEEeeCC---------------CCCHHHHHHHHH
Confidence 345778888899999876654221 23333322211 13333333 578888777655
Q ss_pred ccCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcC---------------------CHHHHHHHHHHhhcccC
Q 018935 129 ADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISK---------------------TPSEAQIFLEALEQGLG 184 (348)
Q Consensus 129 ~~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~---------------------~~~eA~~al~~LE~G~D 184 (348)
. .++.+++... ++.+ ++++.+.+.+ .+++..+. +....+.+.+..+.|++
T Consensus 95 -~-Ga~~Viigt~~l~~p~~--~~ei~~~~g~--~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 168 (253)
T PRK02083 95 -A-GADKVSINSAAVANPEL--ISEAADRFGS--QCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAG 168 (253)
T ss_pred -c-CCCEEEEChhHhhCcHH--HHHHHHHcCC--CCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCC
Confidence 2 4778888653 3332 3556665521 24444332 22334555667889999
Q ss_pred eEEEec
Q 018935 185 GIVLKV 190 (348)
Q Consensus 185 GVvl~~ 190 (348)
++++++
T Consensus 169 ~ii~~~ 174 (253)
T PRK02083 169 EILLTS 174 (253)
T ss_pred EEEEcC
Confidence 999966
No 136
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=54.61 E-value=15 Score=32.56 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=40.8
Q ss_pred CCCCeeee-----cCCceeEEEecCCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 269 ASRPFRVN-----AGPVHAYVLVPGGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 269 a~RPFRVN-----AGaVHaYv~~pggkT~YLS-EL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
..|||-+- .|-+.=+|...|+-|+||. .|+.||+|.+-...|+... .-+.+|+++|=
T Consensus 40 ~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l~~G~~v~i~gP~G~~~~------~~~~~~~vlia 102 (216)
T cd06198 40 EPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERLKPGTRVTVEGPYGRFTF------DDRRARQIWIA 102 (216)
T ss_pred CCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhCCCCCEEEEECCCCCCcc------cccCceEEEEc
Confidence 34666663 2445556667788999999 8999999999999887422 11257888874
No 137
>PLN02623 pyruvate kinase
Probab=54.56 E-value=21 Score=38.62 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=51.1
Q ss_pred CCCeEEEeCC-C-CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 018935 132 QAENIVIDLP-D-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (348)
Q Consensus 132 ~~~~vvv~~~-D-W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (348)
..|++-+.|- + =.|..+-++++.. +....|++...+.+-.+-+-++++ |+|||++.+.|.+
T Consensus 291 ~vD~ialSFVr~a~DV~~~r~~l~~~-~~~~~iiakIEt~eaVeNldeIl~-g~DgImIgrgDLg 353 (581)
T PLN02623 291 KVDFYAVSFVKDAQVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLG 353 (581)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHc-CCcceEEEEECCHHHHHhHHHHHH-hCCEEEECcchhh
Confidence 6899999875 2 2477788888874 456789999999999999999999 9999999999863
No 138
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=54.55 E-value=1e+02 Score=27.04 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=55.3
Q ss_pred hhHHHHHHHhCCcEEEEcCcc-hhhhhhccceeeeeeeeecCCccccCCCCeeEE-EEEecChhhhhhhccccCCCCeEE
Q 018935 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS-IIEVSTPQELQQLQPADGQAENIV 137 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~-~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~-~~~v~~~ed~e~~~~~~~~~~~vv 137 (348)
...+..+.+.|+|.++++.+. .+...++-+. .++.|.+.+. .....++++..++ .....+++.
T Consensus 67 ~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~-------------~~~~g~~~~v~~~~~~t~~e~~~~--~~~~~d~v~ 131 (202)
T cd04726 67 ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKA-------------AKKYGKEVQVDLIGVEDPEKRAKL--LKLGVDIVI 131 (202)
T ss_pred HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHH-------------HHHcCCeEEEEEeCCCCHHHHHHH--HHCCCCEEE
Confidence 346788999999999987542 1111111111 1122444433 2455566665542 223678887
Q ss_pred EeC----CCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 138 IDL----PDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 138 v~~----~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
+.. .....-.-..-+.++.. .+..+.+. .-.. .+.+-++++.|+||+++-+
T Consensus 132 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~-GGI~-~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 132 LHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVA-GGIT-PDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred EcCcccccccCCCCCHHHHHHHHhhcCCCEEEE-CCcC-HHHHHHHHhcCCCEEEEee
Confidence 731 11111111222232221 22223322 2222 3345677889999998765
No 139
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=54.40 E-value=93 Score=27.78 Aligned_cols=57 Identities=32% Similarity=0.487 Sum_probs=37.3
Q ss_pred CCCeeee-----cCCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 270 SRPFRVN-----AGPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 270 ~RPFRVN-----AGaVHaYv~~-pgg-kT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|||-+- .|-+.-+|.. ++| -|+||-. |+.||+|.+-...|+.... .-..+|+++|=
T Consensus 41 ~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~ivlia 105 (224)
T cd06189 41 KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELKENGLVRIEGPLGDFFLR-----EDSDRPLILIA 105 (224)
T ss_pred ceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhccCCCEEEEecCCccEEec-----cCCCCCEEEEe
Confidence 4555552 3555556655 434 5889865 9999999999998876321 11357888873
No 140
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=54.39 E-value=36 Score=32.82 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=35.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
...|..+++|.+||+.+ ++.|+|.|.|.+=.++++++..+.+
T Consensus 178 ~~~Igvev~t~eea~~A---~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 178 ALKIEVEVESLEEAEEA---AEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 34688999999998765 5899999999999999888877654
No 141
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.99 E-value=68 Score=28.18 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=47.1
Q ss_pred CeeEEEEEecChhhhh-hhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhcccC
Q 018935 109 RRVGSIIEVSTPQELQ-QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGLG 184 (348)
Q Consensus 109 k~v~~~~~v~~~ed~e-~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a---~v~~~~eA~~al~~LE~G~D 184 (348)
..+..-..+.++.... +.+. ...++.+++...... -.++.++..++..+-+++. ...|++|+. .+++.|+|
T Consensus 54 ~~i~~~~~v~~~~~~~~~~~~-~aGad~i~~h~~~~~-~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~d 128 (202)
T cd04726 54 KIIVADLKTADAGALEAEMAF-KAGADIVTVLGAAPL-STIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGVD 128 (202)
T ss_pred CEEEEEEEeccccHHHHHHHH-hcCCCEEEEEeeCCH-HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCCC
Confidence 3444444555553211 1222 236788888776643 3467788887766667664 455666665 47788999
Q ss_pred eEEEec
Q 018935 185 GIVLKV 190 (348)
Q Consensus 185 GVvl~~ 190 (348)
-|++.+
T Consensus 129 ~v~~~~ 134 (202)
T cd04726 129 IVILHR 134 (202)
T ss_pred EEEEcC
Confidence 999853
No 142
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=53.84 E-value=1.7e+02 Score=26.51 Aligned_cols=116 Identities=17% Similarity=0.126 Sum_probs=61.2
Q ss_pred hhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 018935 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (348)
.++..++++.|++.+-+.. ++.+.+++..++-.+.+ +..+ ++.....++ .+.++++.+.. . .++.+++
T Consensus 30 ~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~-~~~~---~~~~~~~ig-----~~~~~~~~a~~-a-Gad~I~~ 98 (219)
T cd04729 30 AAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGL-IKRD---YPDSEVYIT-----PTIEEVDALAA-A-GADIIAL 98 (219)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEE-EecC---CCCCCceeC-----CCHHHHHHHHH-c-CCCEEEE
Confidence 6788889999999866543 22334443333322211 0111 110010011 12233333222 2 5677777
Q ss_pred eCCC---CeeeehhhhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 139 DLPD---WQVIPAENIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 139 ~~~D---W~iIPlENliA~~q~~~-~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
+... ..--.+++++.++.... -.++..+.+.+||+. +.+.|+|.+.+.
T Consensus 99 ~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~---a~~~G~d~i~~~ 150 (219)
T cd04729 99 DATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALN---AAKLGFDIIGTT 150 (219)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHH---HHHcCCCEEEcc
Confidence 5432 22124567776655444 677888999999854 566799998764
No 143
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=53.74 E-value=18 Score=32.40 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.8
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~ 77 (348)
+..+++|+|| .+++.+..++..|+|+|+.+
T Consensus 197 ~~g~~v~~wTvn~~~~~~~~~~~gVdgiiTD 227 (229)
T cd08562 197 DAGYKLLVYTVNDPARAAELLEWGVDAIFTD 227 (229)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcC
Confidence 3567899999 57999999999999999865
No 144
>COG4697 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.53 E-value=20 Score=35.94 Aligned_cols=71 Identities=24% Similarity=0.203 Sum_probs=46.8
Q ss_pred EEEEEEEcCCcceE-----EEeecC-----CCCCCceEEEeccC--------------ceEEEEeeccccCCCC------
Q 018935 219 TVTRVDVAGMGDRV-----CVDLCS-----LMRPGEGLLVGSFA--------------RGLFLVHSECLESNYI------ 268 (348)
Q Consensus 219 tVt~V~~vGmGdRV-----CVDtcs-----ll~~GEGmLVGS~S--------------~glFLVhsEt~es~Yv------ 268 (348)
.|..+.-.|++.|. ||||-| +--.|||++.|-+- .++|.-.+|.-+-|.-
T Consensus 177 ~i~d~a~Fg~~~~~~p~v~~id~esg~~~~~~~DGe~l~~~~~gA~~~~~~r~~a~~~Ggf~v~~pe~g~ep~f~r~~df 256 (319)
T COG4697 177 DISDKATFGLLLRIDPGVPQIDTESGAIFGMALDGEGLYIGASGANHTGVYRYRAGDGGGFAVPVPELGREPRFPRRIDF 256 (319)
T ss_pred eeeeeeeeeeecccCCCceeEeecccccccccccCCceeeccccceeeeEEEEEEecCceEEecCcccCCCccceEEEEe
Confidence 35555566777664 899876 44578999988643 2344556776655533
Q ss_pred --CCCCeeeecCCceeEEEecCC
Q 018935 269 --ASRPFRVNAGPVHAYVLVPGG 289 (348)
Q Consensus 269 --a~RPFRVNAGaVHaYv~~pgg 289 (348)
+--|||+||+..--=++.|-+
T Consensus 257 ~~~YsPtr~nal~fGGgvli~Fn 279 (319)
T COG4697 257 HGSYSPTRGNALWFGGGVLIGFN 279 (319)
T ss_pred cCccCCcccccceecceeeeccc
Confidence 234999999988777766544
No 145
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=53.47 E-value=21 Score=33.06 Aligned_cols=50 Identities=28% Similarity=0.344 Sum_probs=38.4
Q ss_pred CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 278 GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 278 GaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|-++=+|..-|.-|+||.+++.||+|.+-...|+.-.. -..+.+|+++|=
T Consensus 56 ~~l~~~Ik~~G~~S~~L~~l~~G~~v~i~gP~G~~f~~----~~~~~~~iv~IA 105 (253)
T cd06221 56 GPLELTIRRVGRVTEALHELKPGDTVGLRGPFGNGFPV----EEMKGKDLLLVA 105 (253)
T ss_pred CeEEEEEEeCChhhHHHHcCCCCCEEEEECCcCCCccc----ccccCCeEEEEc
Confidence 55677787778899999999999999999999974321 112568988874
No 146
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=53.39 E-value=60 Score=31.25 Aligned_cols=116 Identities=12% Similarity=0.112 Sum_probs=61.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~~~vv 137 (348)
-.+.+..|-|+|+|++++++=-.+..+++... .++.|-....++.-++ .+.++.++......=|++
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~v 172 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPPEEAEELRAA-------------AKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYV 172 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 46789999999999999985222333222211 1122322223333344 444555555432222221
Q ss_pred --EeCCCCe-e--eehhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 138 --IDLPDWQ-V--IPAENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 138 --v~~~DW~-i--IPlENliA~~q~~-~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
.-.++.+ - -++++.+..+.+. +..|+ ..+++.++++.++ + ++|||++-+.
T Consensus 173 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~---~-~ADGviVGSa 230 (258)
T PRK13111 173 SRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIA---A-VADGVIVGSA 230 (258)
T ss_pred eCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHH---H-hCCEEEEcHH
Confidence 1113432 2 2366666666543 33333 4567888888766 3 4999999874
No 147
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=53.35 E-value=16 Score=34.27 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=26.8
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 018935 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 49 ~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
....+++|| .+.+.|...++.|+|+|+.+..
T Consensus 230 ~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 230 RGIQVYLWVLNDEEDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred cCCcEEEEEECCHHHHHHHHhcCCCEEEeCCc
Confidence 567799999 5699999999999999998754
No 148
>PRK08114 cystathionine beta-lyase; Provisional
Probab=53.33 E-value=9.4 Score=38.71 Aligned_cols=123 Identities=11% Similarity=0.177 Sum_probs=73.6
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeee---eee-cCC---------ccccCCCCeeEEEEEecChhhhhhh
Q 018935 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEG---------EVYDSGDRRVGSIIEVSTPQELQQL 126 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~---l~~-~~g---------~~~~~~gk~v~~~~~v~~~ed~e~~ 126 (348)
=|-.-++||.|-.+++|++.......-+..+ ..+ +++ ++. ..++..|..+ .++...+.++++.+
T Consensus 67 le~~la~LEg~~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v-~~vd~~d~~~l~~~ 143 (395)
T PRK08114 67 LQEAMCELEGGAGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTT-TWFDPLIGADIAKL 143 (395)
T ss_pred HHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEE-EEECCCCHHHHHHh
Confidence 3556678999999999998654333222222 122 222 222 1234456554 33344455554443
Q ss_pred ccccCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 018935 127 QPADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (348)
Q Consensus 127 ~~~~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (348)
-. .+..-|.++.. ..++.|++.|.+.+...+..++..|.+.--.-..+..++.|+|=|+
T Consensus 144 l~--~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv 205 (395)
T PRK08114 144 IQ--PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISI 205 (395)
T ss_pred cC--CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEE
Confidence 22 23456666665 4678999999988765422366677777666777999999998554
No 149
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=53.14 E-value=21 Score=32.77 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=27.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~ 78 (348)
+..+.+++|+ .+.+.+..+++.|+|+|+.+.
T Consensus 210 ~~G~~v~vWTVN~~~~~~~l~~~gVdgIiTD~ 241 (249)
T cd08561 210 AAGLEVHVWTVNDPAEMRRLLDLGVDGIITDR 241 (249)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEcCC
Confidence 4578899999 679999999999999999765
No 150
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=53.09 E-value=18 Score=33.57 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.4
Q ss_pred CcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 018935 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 50 ~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
.+.+++|| .+++.+..+++.|+|+|+.+..
T Consensus 201 g~~v~~WTVn~~~~~~~l~~~GVdgIiTD~P 231 (235)
T cd08565 201 GLRLGVWTVNDDSLIRYWLACGVRQLTTDRP 231 (235)
T ss_pred CCEEEEEccCCHHHHHHHHHcCCCEEEeCCc
Confidence 67899999 5799999999999999997653
No 151
>TIGR01445 intein_Nterm intein N-terminal splicing region. This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Probab=52.52 E-value=39 Score=25.56 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=37.9
Q ss_pred eEEEecCCceeeeeeccC---------CCeEEEEcCCCCeeEEeeeeEEe-eccceeEEEEEECCEeee
Q 018935 282 AYVLVPGGKTCYLSELKS---------GKEVIVVDQKGRQRTAVVGRVKI-ESRPLILVEAKVIKLFTA 340 (348)
Q Consensus 282 aYv~~pggkT~YLSEL~a---------G~eVLvVd~~G~tR~~~VGRvKI-E~RPLlLIeAe~~G~~~~ 340 (348)
+.|+.++|++..+.||-. |.+|+.+|.++......+=..+. ...|++-|+.+.+-.+.+
T Consensus 5 t~V~~~~G~~~~i~el~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~~i~~ 73 (81)
T TIGR01445 5 TKVLTEDGETVKIGELVEKEKDEKEPIKVKVLSLDGGKIVKARPVVVWKRRAEGKLIRIKTENGREIKA 73 (81)
T ss_pred CEEEeCCCCEEEHHHHHHHHhccCCccceEEEeecCCcEEEeeceEEEEecCCCcEEEEEeCCCCEEEE
Confidence 556778888889998877 67899987664443333322444 234777777666555554
No 152
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=52.36 E-value=22 Score=31.78 Aligned_cols=49 Identities=20% Similarity=0.459 Sum_probs=35.4
Q ss_pred CCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEE
Q 018935 278 GPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (348)
Q Consensus 278 GaVHaYv~~-pgg-kT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeA 332 (348)
|-+.=+|.. |+| -|+||.. |+.||.|.+....|+.-.. . ..+|+++|=+
T Consensus 59 ~~i~~~i~~~~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~---~---~~~~~vlia~ 110 (228)
T cd06209 59 PRLEFLIRLLPGGAMSSYLRDRAQPGDRLTLTGPLGSFYLR---E---VKRPLLMLAG 110 (228)
T ss_pred CeEEEEEEEcCCCcchhhHHhccCCCCEEEEECCcccceec---C---CCCeEEEEEc
Confidence 555566665 655 4899998 9999999999999976321 1 2378888743
No 153
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=52.02 E-value=20 Score=33.52 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=26.6
Q ss_pred CCCcEEEEEe-----CchhHHHHHHHhCCcEEEEcC
Q 018935 48 SKPKRVWIWT-----ESKQVMTAAVERGWNTFVFLS 78 (348)
Q Consensus 48 ~~~K~vWiw~-----~~K~~vT~ALEsG~~~~v~~~ 78 (348)
...+.+|+|+ .+++.+...++.|+|+|+.+.
T Consensus 221 ~~Gl~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~ 256 (265)
T cd08564 221 ENGLKVMTYFDEPVNDNEEDYKVYLELGVDCICPND 256 (265)
T ss_pred HcCCEEEEecCCCCCCCHHHHHHHHHcCCCEEEcCC
Confidence 4577899997 568999999999999999765
No 154
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.83 E-value=1e+02 Score=29.31 Aligned_cols=125 Identities=17% Similarity=0.064 Sum_probs=65.2
Q ss_pred CchhHHHHHHHhCCcEEEEcC---cchhhhhhcccee-eeeeeee--cCCccccCCCCeeEEEEEec--Chhhhhhhccc
Q 018935 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIA-LLDPLFI--KEGEVYDSGDRRVGSIIEVS--TPQELQQLQPA 129 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~---~~~e~~~~l~~i~-~i~~l~~--~~g~~~~~~gk~v~~~~~v~--~~ed~e~~~~~ 129 (348)
++.+-+...++.|++.+++.. ++.++.+++.+.+ .+ .+.+ .+|.+...... +-+ ++.++-.....
T Consensus 83 rs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~i-vvslD~k~g~v~~~gw~------~~~~~~~~e~~~~~~~ 155 (241)
T PRK14114 83 RSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEP-VFSLDTRGGKVAFKGWL------AEEEIDPVSLLKRLKE 155 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCE-EEEEEccCCEEeeCCCe------ecCCCCHHHHHHHHHh
Confidence 578999999999999999886 4566666664331 11 1222 33332211111 111 12221111111
Q ss_pred cCCCCeEEEeCC--C--CeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHH--hhcc-cCeEEEec
Q 018935 130 DGQAENIVIDLP--D--WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEA--LEQG-LGGIVLKV 190 (348)
Q Consensus 130 ~~~~~~vvv~~~--D--W~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~--LE~G-~DGVvl~~ 190 (348)
. ....+|+..- | -+=+.+|.+-.-.+..+..|++ -+++.+|-+.+... +..| ++|+++..
T Consensus 156 ~-g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~ 224 (241)
T PRK14114 156 Y-GLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGR 224 (241)
T ss_pred c-CCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEeh
Confidence 2 3455555321 1 1223344332222223446665 48999998877653 2457 99999864
No 155
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=51.74 E-value=15 Score=34.63 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=29.8
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 288 ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|--|.||++|+.||+|.+-...|+.-... .-..+|+++|=
T Consensus 103 G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIa 142 (286)
T cd06208 103 GVCSNYLCDLKPGDDVQITGPVGKTMLLP----EDPNATLIMIA 142 (286)
T ss_pred cchHHHHhhCCCCCEEEEEeecCCcccCC----CCCCCCEEEEe
Confidence 66789999999999999998888652211 01357898884
No 156
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=51.51 E-value=1.1e+02 Score=29.58 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=49.1
Q ss_pred CCCeEEEeCCCC-----eeeehhhhhhcc---cCCCceEEEEcCCHHH---HHHHHHHhhcccCeEEEe-cCCHHHHHHH
Q 018935 132 QAENIVIDLPDW-----QVIPAENIVASF---QGSGKTVFAISKTPSE---AQIFLEALEQGLGGIVLK-VEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW-----~iIPlENliA~~---q~~~~~l~a~v~~~~e---A~~al~~LE~G~DGVvl~-~~d~~~v~~l 199 (348)
..|.++++..|= +----+|++..+ ...+..++..++..+. ..-...+|..|+|||+|. .++++++..+
T Consensus 24 gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g~~givlPKv~s~~~v~~~ 103 (288)
T TIGR01588 24 GADSVMFDLEDAVSLAEKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAGVDVVRLPKTDTAEDIHEL 103 (288)
T ss_pred CCCEEEEecccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHH
Confidence 689999977762 111123344433 2234579999996544 456677788999999986 5668888888
Q ss_pred HHhhc
Q 018935 200 KEYFD 204 (348)
Q Consensus 200 ~~~~~ 204 (348)
.+.+.
T Consensus 104 ~~~l~ 108 (288)
T TIGR01588 104 EKLIE 108 (288)
T ss_pred HHHHH
Confidence 77764
No 157
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=51.10 E-value=73 Score=30.64 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=42.9
Q ss_pred ecChhhhhhhccccCCCCeEEEeC-----CCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 117 VSTPQELQQLQPADGQAENIVIDL-----PDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 117 v~~~ed~e~~~~~~~~~~~vvv~~-----~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
+.++++...+.. ..++.+++.. .||.+..++.|....+.- +..||+ .......+-++.+|..|+|||.+-
T Consensus 180 v~s~~~a~~a~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia-~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 180 ILTPEDALRAVD--AGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLL-DGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred cCCHHHHHHHHH--CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEE-eCCCCCHHHHHHHHHcCCCEEEEc
Confidence 466666443332 3678888844 367777777665433322 245554 334444445555667899999998
Q ss_pred cC
Q 018935 190 VE 191 (348)
Q Consensus 190 ~~ 191 (348)
+.
T Consensus 257 ~~ 258 (299)
T cd02809 257 RP 258 (299)
T ss_pred HH
Confidence 74
No 158
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=51.04 E-value=17 Score=34.95 Aligned_cols=57 Identities=18% Similarity=0.356 Sum_probs=37.2
Q ss_pred CCCeeeecCC-----ceeEEE-ecCCc-eeeee-eccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 270 SRPFRVNAGP-----VHAYVL-VPGGK-TCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 270 ~RPFRVNAGa-----VHaYv~-~pggk-T~YLS-EL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|||-+-..| +-=+|. .|+|+ |+||. +|+.||+|.+-...|+-..- .-..+|+++|=
T Consensus 54 ~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~-----~~~~~~~vliA 118 (332)
T PRK10684 54 LRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMGEFTCD-----DKAEDKYLLLA 118 (332)
T ss_pred eeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhcCCCCCEEEEeCCccccccC-----CCCCCcEEEEe
Confidence 3677664322 222333 37666 89995 89999999999888875311 12457888874
No 159
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=50.62 E-value=44 Score=32.26 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=35.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
..+|..+++|.+||+.+ ++.|+|.|.|.+=.+++++++.+.+
T Consensus 182 ~~~Igvev~s~eea~~A---~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 182 TLKIEVEVETLEQLKEA---LEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred CCeEEEEECCHHHHHHH---HHcCCCEEEECCcCHHHHHHHHHHc
Confidence 34789999999998776 4789999999999999988877765
No 160
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=50.61 E-value=20 Score=33.26 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
.+.+++++|| .+.+.+...++.|+|+|+.+..
T Consensus 207 ~~g~~v~~WTvn~~~~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 207 AAGLRILVYTVNDPARARELLRWGVDCICTDRI 239 (249)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCCh
Confidence 4677899999 5799999999999999998754
No 161
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.54 E-value=31 Score=35.62 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=46.8
Q ss_pred ChhhhhhhccccC-CCCeEEEeCCCCeeeehhhhhhcccCC--CceE-EEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 119 TPQELQQLQPADG-QAENIVIDLPDWQVIPAENIVASFQGS--GKTV-FAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 119 ~~ed~e~~~~~~~-~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l-~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
++++++++..... .+|.++|+..+-.-..+.++|..+... +..| .+.+.+.++|+.+. +.|+|+|.+-
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~---~aGaD~I~vG 222 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLI---SVGADCLKVG 222 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHH---HcCCCEEEEC
Confidence 3555566555443 699999999876666677777766543 2334 44888888888765 4699999864
No 162
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.31 E-value=1.1e+02 Score=27.69 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=70.0
Q ss_pred chhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 59 SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~---~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
-.+++.++++.|++.+=++..+ .+..+...++ .++. .+ ....+...++.+.+.. . .++.
T Consensus 26 ~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~---~~~~------------~~-g~gtvl~~d~~~~A~~-~-gAdg 87 (187)
T PRK07455 26 GLQMAEAVAAGGMRLIEITWNSDQPAELISQLREK---LPEC------------II-GTGTILTLEDLEEAIA-A-GAQF 87 (187)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHh---CCCc------------EE-eEEEEEcHHHHHHHHH-c-CCCE
Confidence 3678899999999988886433 2233222222 1100 01 1224455566554432 2 6788
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhh
Q 018935 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (348)
Q Consensus 136 vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d----~~~v~~l~~~~ 203 (348)
+++-..|-.+++.-+... ...++. +.|++|+..+. +.|+|=|-+-|.+ ++-+++++..+
T Consensus 88 v~~p~~~~~~~~~~~~~~-----~~~i~G-~~t~~e~~~A~---~~Gadyv~~Fpt~~~~G~~~l~~~~~~~ 150 (187)
T PRK07455 88 CFTPHVDPELIEAAVAQD-----IPIIPG-ALTPTEIVTAW---QAGASCVKVFPVQAVGGADYIKSLQGPL 150 (187)
T ss_pred EECCCCCHHHHHHHHHcC-----CCEEcC-cCCHHHHHHHH---HCCCCEEEECcCCcccCHHHHHHHHhhC
Confidence 988777877776554332 234565 89999986655 6899999776664 34455555443
No 163
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=50.15 E-value=20 Score=32.48 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=37.7
Q ss_pred CCCCeeeecC----CceeEEEe-c-CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 269 ASRPFRVNAG----PVHAYVLV-P-GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 269 a~RPFRVNAG----aVHaYv~~-p-ggkT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
-.|||-+--. -+.=.|.. | |.-|+||.+ |+.||+|.+....|... .. +...+|+++|=
T Consensus 56 ~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~~~---~~--~~~~~~lllia 120 (247)
T cd06184 56 QIRQYSLSDAPNGDYYRISVKREPGGLVSNYLHDNVKVGDVLEVSAPAGDFV---LD--EASDRPLVLIS 120 (247)
T ss_pred eeEEeEeccCCCCCeEEEEEEEcCCCcchHHHHhcCCCCCEEEEEcCCCceE---CC--CCCCCcEEEEe
Confidence 3566666322 23334443 3 566999998 99999999998888642 11 11457888874
No 164
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=50.14 E-value=1.2e+02 Score=25.33 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=41.1
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (348)
..+.++++......-. -+++..++.. ...++... +..+.......++.|+++++.+|.+++++...-+
T Consensus 45 ~~dlvi~d~~~~~~~g-~~~~~~l~~~~~~~~ii~ls-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~ 114 (204)
T PRK09958 45 KPDIVIIDVDIPGVNG-IQVLETLRKRQYSGIIIIVS-AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE 114 (204)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhhCCCCeEEEEe-CCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHH
Confidence 4577777544333222 2344444332 23444443 3445566678899999999999999887765443
No 165
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=49.99 E-value=42 Score=32.65 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=82.5
Q ss_pred EEEEeC---chhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccCCCCeeEEEEEecChh
Q 018935 53 VWIWTE---SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQ 121 (348)
Q Consensus 53 vWiw~~---~K~~vT~ALEsG~~~~v~~~~~------~e~~~~l~~i~~i~--~l~~~~g~~~~~~gk~v~~~~~v~~~e 121 (348)
|.+--+ +.+.+..|++.|++.|+++.-+ .++.+++-.+..-. .+-.+=|.+-..++..++.-...+++|
T Consensus 77 v~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~e 156 (282)
T TIGR01859 77 VALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPD 156 (282)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHH
Confidence 555433 6899999999999999998643 22333333222110 111111111011111111012357898
Q ss_pred hhhhhccccCCCCeEEEe-------CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH-
Q 018935 122 ELQQLQPADGQAENIVID-------LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV- 193 (348)
Q Consensus 122 d~e~~~~~~~~~~~vvv~-------~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~- 193 (348)
+..++.... ..|++.+. ++....+.+|.|-.--+..+.-|++.=.|--..+.+-.+.+.|+++|=+.|+=-
T Consensus 157 ea~~f~~~t-gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 157 EAEQFVKET-GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred HHHHHHHHH-CcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHH
Confidence 877776544 57888863 333455667765333222344566666444444556778889999999999842
Q ss_pred HHHHHHHHhh
Q 018935 194 KAVLALKEYF 203 (348)
Q Consensus 194 ~~v~~l~~~~ 203 (348)
.-...+++++
T Consensus 236 a~~~~~~~~~ 245 (282)
T TIGR01859 236 AFTAAIRKVL 245 (282)
T ss_pred HHHHHHHHHH
Confidence 3344445554
No 166
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=49.58 E-value=22 Score=32.57 Aligned_cols=31 Identities=10% Similarity=-0.039 Sum_probs=26.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~ 78 (348)
.+.+.+|+|| .+.+.|...++.|+|+++.+.
T Consensus 203 ~~Gl~v~vwTVn~~~~~~~l~~~GVdgiiTD~ 234 (237)
T cd08583 203 KAGIYVYVYTINDLKDAQEYKKLGVYGIYTDF 234 (237)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCC
Confidence 3567899999 568899999999999998643
No 167
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.50 E-value=1.1e+02 Score=28.69 Aligned_cols=122 Identities=7% Similarity=-0.024 Sum_probs=61.1
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee--e-eeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 018935 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--L-LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~---~~e~~~~l~~i~--~-i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~ 131 (348)
++-+-+...++.|++.+++... +.++.+++..-- + +--+-..+|.+.....+.. .=.++.+.-......
T Consensus 86 rs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~----~~~~~~~~~~~~~~~- 160 (234)
T PRK13587 86 RTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEED----TELNLFSFVRQLSDI- 160 (234)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCccc----CCCCHHHHHHHHHHc-
Confidence 6899999999999999999863 445555554321 1 1112223332221111000 001122221111112
Q ss_pred CCCeEEEeCCCC----e--eee-hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 132 QAENIVIDLPDW----Q--VIP-AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 132 ~~~~vvv~~~DW----~--iIP-lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
....+|+..-+= + ..+ ++.+.+. .+..+++ .+.+.++.+.++ +.|+|||++-+
T Consensus 161 g~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~---~~G~~~vivG~ 222 (234)
T PRK13587 161 PLGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLA---SLNVHAAIIGK 222 (234)
T ss_pred CCCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHH---HcCCCEEEEhH
Confidence 234555533321 1 122 3344332 2334554 479999999876 46999999865
No 168
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=49.43 E-value=24 Score=32.52 Aligned_cols=58 Identities=29% Similarity=0.410 Sum_probs=38.8
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEE
Q 018935 270 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (348)
Q Consensus 270 ~RPFRVNA-----GaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeA 332 (348)
.|||=+-. |-+.=.+..-|+-|+||..|+.||+|.+-...|+.- ..-. ..+|+++|=+
T Consensus 44 ~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l~~Gd~v~i~gP~G~~~--~~~~---~~~~~vlIag 106 (246)
T cd06218 44 RRPISIHDVDPEEGTITLLYKVVGKGTRLLSELKAGDELDVLGPLGNGF--DLPD---DDGKVLLVGG 106 (246)
T ss_pred CCceEeeeccCCCCEEEEEEEEECcchHHHhcCCCCCEEEEEecCCCCc--CCCC---CCCcEEEEec
Confidence 46665533 223334555577899999999999999999888631 1211 4688888743
No 169
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=49.23 E-value=65 Score=37.28 Aligned_cols=91 Identities=12% Similarity=0.186 Sum_probs=59.8
Q ss_pred eeEEEEEEEEEcCCcceE-EE---eecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeee---e--cCCceeEEE
Q 018935 215 LMKATVTRVDVAGMGDRV-CV---DLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRV---N--AGPVHAYVL 285 (348)
Q Consensus 215 L~~atVt~V~~vGmGdRV-CV---Dtcsll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRV---N--AGaVHaYv~ 285 (348)
+-.++|.+++.++-+-.- .| +..-..+||+=+.|-.+ +....+...+|||-+ + .|-+--.+.
T Consensus 790 ~l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~---------~~g~~~l~~p~P~SI~~vD~e~g~It~i~r 860 (1028)
T PRK06567 790 LLTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNY---------SEDAAKLIEPVALSPIDIDVEKGLISFIVF 860 (1028)
T ss_pred hhceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeC---------CCCCccccCceeEEeeccCCCCCEEEEEEE
Confidence 446889998888765322 22 11223567764333221 111123457789987 2 365666777
Q ss_pred ecCCceeeeeeccCCCeEEEEcCCCCeeE
Q 018935 286 VPGGKTCYLSELKSGKEVIVVDQKGRQRT 314 (348)
Q Consensus 286 ~pggkT~YLSEL~aG~eVLvVd~~G~tR~ 314 (348)
.-|.-|++|++|+.||.|-+...-|+.-.
T Consensus 861 vVGkgT~~Ls~l~~Gd~v~v~GPLG~pF~ 889 (1028)
T PRK06567 861 EVGKSTSLCKTLSENEKVVLMGPTGSPLE 889 (1028)
T ss_pred EEChHHHHHhcCCCCCEEEEEcccCCCCC
Confidence 77999999999999999999999997543
No 170
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=49.10 E-value=55 Score=34.53 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=69.2
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 018935 56 WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (348)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~ 135 (348)
-.+.++.+.+.+|.|+|-++++..|-+....|..+.+|...+ + +.. .+...|.+.|+-..+.. ..+|.
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~-------p--~~~-vi~g~v~t~e~a~~a~~--aGaD~ 313 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTY-------P--ELD-VIGGNVVTMYQAQNLIQ--AGVDG 313 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhC-------C--CCc-EEEecCCCHHHHHHHHH--cCcCE
Confidence 346799999999999999999876543333333343332200 0 111 12235788887555543 36777
Q ss_pred EEEe--------CCC------CeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 136 IVID--------LPD------WQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 136 vvv~--------~~D------W~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
+++. .+. .+.=++.++-...+..+..||+. +++..++. .+|..|+|+|++-+-
T Consensus 314 i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~---kAla~GA~~V~vGs~ 382 (505)
T PLN02274 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIV---KALTLGASTVMMGSF 382 (505)
T ss_pred EEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHH---HHHHcCCCEEEEchh
Confidence 7762 111 12223333333333335567764 56666654 556789999998653
No 171
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.80 E-value=1.2e+02 Score=27.70 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=53.7
Q ss_pred eeeeeeecCCccccC-CCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCee---eehhhhhhccc-CCCceEEE--
Q 018935 92 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---IPAENIVASFQ-GSGKTVFA-- 164 (348)
Q Consensus 92 ~i~~l~~~~g~~~~~-~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~i---IPlENliA~~q-~~~~~l~a-- 164 (348)
.|..|.+.+|..+.. +|+.--..+...++.++-+..... ..+++.+...|=.. ...-+.|.++- .....++.
T Consensus 5 iip~idl~~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~~-G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~G 83 (241)
T PRK13585 5 VIPAVDMKGGKCVQLVQGEPGTETVSYGDPVEVAKRWVDA-GAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGG 83 (241)
T ss_pred EEEEEEeECCeEEEeeccccCCceEECCCHHHHHHHHHHc-CCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcC
Confidence 345567778876643 232111222345666655554443 46777775554211 12222333221 12222333
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 018935 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (348)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (348)
.+++.++++.++. .|+|+|++.+....
T Consensus 84 Gi~~~~~~~~~~~---~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 84 GIRSAEDAASLLD---LGVDRVILGTAAVE 110 (241)
T ss_pred CcCCHHHHHHHHH---cCCCEEEEChHHhh
Confidence 4689999988875 79999999986543
No 172
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=48.67 E-value=1.6e+02 Score=27.86 Aligned_cols=119 Identities=11% Similarity=0.113 Sum_probs=59.3
Q ss_pred chhHHHHHHHhCCcEEEEcCc---chhhhhhccce----eeeeeeeecCCccccCCCCeeEEEE----Eec--Chhhhhh
Q 018935 59 SKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSII----EVS--TPQELQQ 125 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~---~~e~~~~l~~i----~~i~~l~~~~g~~~~~~gk~v~~~~----~v~--~~ed~e~ 125 (348)
+-+-+...++.|++.+++... +.++.+++.+- ..+-.+-+.+|. .|. .-++. +.. ++.++-.
T Consensus 85 s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~----~~~-~~v~~~gw~~~~~~~~~e~~~ 159 (258)
T PRK01033 85 TLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNL----GGK-FDVYTHNGTKKLKKDPLELAK 159 (258)
T ss_pred CHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCC----CCc-EEEEEcCCeecCCCCHHHHHH
Confidence 556677788999999998863 34444444321 111122223330 111 00110 011 2222222
Q ss_pred hccccCCCCeEEEeCC---------CCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 018935 126 LQPADGQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 126 ~~~~~~~~~~vvv~~~---------DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
..... .++.+++... ||..| +.+.. ..+..|++. +.+.+|++.+++ +.|+|||++..
T Consensus 160 ~~~~~-g~~~ii~~~i~~~G~~~G~d~~~i--~~~~~---~~~ipvIasGGv~s~eD~~~l~~--~~GvdgVivg~ 227 (258)
T PRK01033 160 EYEAL-GAGEILLNSIDRDGTMKGYDLELL--KSFRN---ALKIPLIALGGAGSLDDIVEAIL--NLGADAAAAGS 227 (258)
T ss_pred HHHHc-CCCEEEEEccCCCCCcCCCCHHHH--HHHHh---hCCCCEEEeCCCCCHHHHHHHHH--HCCCCEEEEcc
Confidence 22222 4567777533 34443 22222 234456654 788888887764 45999998754
No 173
>PRK08187 pyruvate kinase; Validated
Probab=48.65 E-value=72 Score=33.83 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=75.3
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC--
Q 018935 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA-- 133 (348)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~-- 133 (348)
+.+++-+..+++ ++|.|.++. ++++.+..+..+- . ..++. .++.+..+.+|.+++-++.+..-...+
T Consensus 312 ekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L--~---~~~~~----~~~~~~IIaKIET~~gv~Nl~eI~~~ad~ 381 (493)
T PRK08187 312 EKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAAL--A---ARRPD----DWRKLGLVLKIETPRAVANLPELIVQAAG 381 (493)
T ss_pred HhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHH--H---HhCCC----CCCCCeEEEEECCHHHHHHHHHHHHHhCc
Confidence 345777888888 799988885 3344444443330 0 00000 023567888999998887766554222
Q ss_pred ---CeEEEeCCC------Ceeeeh--hhhhhcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 134 ---ENIVIDLPD------WQVIPA--ENIVASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 134 ---~~vvv~~~D------W~iIPl--ENliA~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
.-+++-..| ++-.|. +.||.+....+.-+|. ...+-.|+--++.+ .|+|+|+|...
T Consensus 382 ~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs~G 459 (493)
T PRK08187 382 RQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLNKG 459 (493)
T ss_pred CCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeecCC
Confidence 256664433 333332 2233333333333332 12233444444443 89999999955
Q ss_pred C--HHHHHHHHHhhccc
Q 018935 192 D--VKAVLALKEYFDGR 206 (348)
Q Consensus 192 d--~~~v~~l~~~~~~~ 206 (348)
. .+.|+-|.+++.+.
T Consensus 460 ~ypveaV~~l~~I~~~~ 476 (493)
T PRK08187 460 PYLVEAVTFLDDLLARM 476 (493)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 4 46777777777543
No 174
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=48.58 E-value=23 Score=32.13 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~ 78 (348)
.+.+.+++|+ .+++.+..+++.|+|+|+.+.
T Consensus 198 ~~g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 198 KRGIPVRLWTVNEEEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEeCCC
Confidence 3577899999 679999999999999998653
No 175
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=48.57 E-value=24 Score=32.03 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=26.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcC
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~ 78 (348)
.+.+.+++|| .+++.+...++.|+|+|+.+.
T Consensus 199 ~~G~~v~~wTvn~~~~~~~l~~~GVdgi~TD~ 230 (233)
T cd08582 199 DAGLKLNVWTVDDAEDAKRLIELGVDSITTNR 230 (233)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcCC
Confidence 3577899999 569999999999999999764
No 176
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=48.33 E-value=15 Score=38.76 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=86.1
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCC
Q 018935 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAE 134 (348)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (348)
+.||+.+..++|-|+|.+-+.. .+.+.++++.++ +.+. |..+..+-+|..++.++.+..-....|
T Consensus 175 eKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~-------------l~~~~~~~~~iiaKIE~~eav~NldeIi~~SD 241 (477)
T COG0469 175 EKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREI-------------LAETGGRDVKIIAKIENQEAVDNLDEIIEASD 241 (477)
T ss_pred ccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHH-------------HHHhCCCCceEEEeecCHHHHhHHHHHHHhcC
Confidence 3579999999999999654432 123334433322 1112 333678889999999888777666678
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 018935 135 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (348)
Q Consensus 135 ~vvv~~~DW~i-IPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d--- 192 (348)
-+.|---|--+ ||+|++.. .....+.-+|.. ..+-.|+--.+.+---|+|+|+|.-+.
T Consensus 242 GIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G 321 (477)
T COG0469 242 GIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAG 321 (477)
T ss_pred ceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcC
Confidence 88875556543 78887643 222222223322 233466666778888899999999875
Q ss_pred ---HHHHHHHHHhhcc
Q 018935 193 ---VKAVLALKEYFDG 205 (348)
Q Consensus 193 ---~~~v~~l~~~~~~ 205 (348)
.+.|+-++.++..
T Consensus 322 ~yPveaV~~M~~I~~~ 337 (477)
T COG0469 322 KYPVEAVATMARIAKE 337 (477)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3666666666643
No 177
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.31 E-value=69 Score=29.23 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=60.4
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc---hhhhhhcccee---ee-eeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 018935 58 ESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIA---LL-DPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~---~e~~~~l~~i~---~i-~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (348)
.+-+-+..+++.|++.+++.... .+...++.+.- ++ -.+...+|...- +|..-. .-.++.++-......
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~-~g~~~~---~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVI-KGWTEK---TGYTPVEAAKRFEEL 161 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEE-CCCccc---CCCCHHHHHHHHHHc
Confidence 45677899999999999998632 33444443331 11 112223332220 010000 001223222222222
Q ss_pred CCCCeEEEeCC--C--Ceeeeh---hhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 131 GQAENIVIDLP--D--WQVIPA---ENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 131 ~~~~~vvv~~~--D--W~iIPl---ENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
.++.+++... | .+-+.+ +.+.... .-+.-...-+.+.++++. .++.|+|||++.+.
T Consensus 162 -G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~---~~~~Ga~gv~vgsa 224 (241)
T PRK13585 162 -GAGSILFTNVDVEGLLEGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRA---LKEAGAAGVVVGSA 224 (241)
T ss_pred -CCCEEEEEeecCCCCcCCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHH---HHHcCCCEEEEEHH
Confidence 4566666433 2 122222 3333322 122233344788999886 36679999998653
No 178
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=48.28 E-value=25 Score=32.45 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=25.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~ 77 (348)
...++|++|| .+.+.|...++.|+|+++.+
T Consensus 197 ~~G~~v~vWTVn~~~~~~~l~~~GVdgiiTD 227 (229)
T cd08581 197 AGTWKWVIYEVNEPAEALALAARGVALIETD 227 (229)
T ss_pred hCCceEEEEEcCCHHHHHHHHHhCCcEEEcC
Confidence 3566799999 57888999999999999865
No 179
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=48.04 E-value=1.5e+02 Score=24.89 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=39.8
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-...-.+ .++..++. ....++... ...+......+++.|+++++.+|-+++++.+.
T Consensus 44 ~~d~illd~~~~~~~g~-~~~~~l~~~~~~~pii~ls-~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~ 111 (222)
T PRK10643 44 HYSLVVLDLGLPDEDGL-HLLRRWRQKKYTLPVLILT-ARDTLEDRVAGLDVGADDYLVKPFALEELHAR 111 (222)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHH
Confidence 45777775433222222 23333332 233455443 34455667888999999999999998877553
No 180
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=47.80 E-value=1e+02 Score=27.10 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=55.7
Q ss_pred hhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~---~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
-+.+..|++.|++.+.++..+ .+..+...++..+. +..| ..+-+.+.- .++... ..+-+
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~----------~~~~----~~l~i~~~~---~la~~~-g~~Gv 77 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELC----------RRYG----VPFIVNDRV---DLALAL-GADGV 77 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHH----------HHhC----CeEEEECHH---HHHHHc-CCCEE
Confidence 357788999999998887532 22222222222111 0011 112233321 122222 34555
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 018935 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
.+...+ ++.+.+-..+ +....|-..+.+.+|+. +++|.|+|=|.+
T Consensus 78 Hl~~~~---~~~~~~r~~~-~~~~~ig~s~h~~~e~~---~a~~~g~dyi~~ 122 (196)
T TIGR00693 78 HLGQDD---LPASEARALL-GPDKIIGVSTHNLEELA---EAEAEGADYIGF 122 (196)
T ss_pred ecCccc---CCHHHHHHhc-CCCCEEEEeCCCHHHHH---HHhHcCCCEEEE
Confidence 554333 3444443322 23457888899998875 477899999986
No 181
>PRK05802 hypothetical protein; Provisional
Probab=47.75 E-value=13 Score=36.31 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=52.5
Q ss_pred eeEEEEEEEEEcCCcce-EEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeE
Q 018935 215 LMKATVTRVDVAGMGDR-VCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAY 283 (348)
Q Consensus 215 L~~atVt~V~~vGmGdR-VCVDtc-----sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaY 283 (348)
-.+++|++++.+.-.-+ +-++.- ..++||+ +.+|-..+ .+-...|||-|- .|-+-=.
T Consensus 64 ~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQ---------Fv~l~~~~---~~~~~~rP~SI~~~~~~~g~l~l~ 131 (320)
T PRK05802 64 TYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGS---------FVFLRNKN---SSSFFDVPISIMEADTEENIIKVA 131 (320)
T ss_pred cEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCc---------eEEEEEcC---CCCEeEEeeEecccCCCCCEEEEE
Confidence 34688888888754322 223321 1245665 33332212 111224888873 2434445
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCe
Q 018935 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQ 312 (348)
Q Consensus 284 v~~pggkT~YLSEL~aG~eVLvVd~~G~t 312 (348)
+..-|..|+||.+|+.||+|.+...-|+.
T Consensus 132 ik~~G~~T~~L~~l~~Gd~l~v~GP~GnG 160 (320)
T PRK05802 132 IEIRGVKTKKIAKLNKGDEILLRGPYWNG 160 (320)
T ss_pred EEecChhHHHHhcCCCCCEEEEeCCCCcC
Confidence 55568889999999999999999998665
No 182
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=47.63 E-value=31 Score=36.33 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=44.2
Q ss_pred ChhhhhhhccccC-CCCeEEEeCCCCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 119 TPQELQQLQPADG-QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 119 ~~ed~e~~~~~~~-~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
.+++.|++..... .+|.++++..+=.-+=.-+.|..+... +..|++ .+.+.++|+.+. +.|+|+|.+.
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~---~aGaD~i~vg 317 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLI---QAGVDGLRVG 317 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHH---HcCcCEEEEC
Confidence 3566677666554 689999988752222222445554432 345654 699999988766 5899999874
No 183
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=47.40 E-value=1.5e+02 Score=28.71 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=60.4
Q ss_pred chhHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~--~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
+.-.|-.|-+.|+|+++.--.- .+..+++-+.+. .-|- -.+++|.+.+|++.+... .++.+
T Consensus 120 d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~-------------~lGl--e~lVEVh~~~El~~al~~--~a~ii 182 (254)
T PF00218_consen 120 DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAH-------------SLGL--EALVEVHNEEELERALEA--GADII 182 (254)
T ss_dssp SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHH-------------HTT---EEEEEESSHHHHHHHHHT--T-SEE
T ss_pred CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHH-------------HcCC--CeEEEECCHHHHHHHHHc--CCCEE
Confidence 4677888999999998764321 111111111111 1122 378899999998886632 56777
Q ss_pred EEeCCCCee--eeh---hhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 018935 137 VIDLPDWQV--IPA---ENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 137 vv~~~DW~i--IPl---ENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
-|+-+|-+- |.+ +.|...+.. +.-++++ +++.+|++. ..+.|+|||++-+
T Consensus 183 GINnRdL~tf~vd~~~~~~l~~~ip~-~~~~iseSGI~~~~d~~~---l~~~G~davLVGe 239 (254)
T PF00218_consen 183 GINNRDLKTFEVDLNRTEELAPLIPK-DVIVISESGIKTPEDARR---LARAGADAVLVGE 239 (254)
T ss_dssp EEESBCTTTCCBHTHHHHHHHCHSHT-TSEEEEESS-SSHHHHHH---HCTTT-SEEEESH
T ss_pred EEeCccccCcccChHHHHHHHhhCcc-ceeEEeecCCCCHHHHHH---HHHCCCCEEEECH
Confidence 787775432 222 233333332 2334443 356666655 4588999999753
No 184
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=47.39 E-value=53 Score=28.75 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.1
Q ss_pred CchhHHHHHHHhCCcEEEEcCc
Q 018935 58 ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
+..+.+..|.+.|+|++++...
T Consensus 68 d~~~~~~~~~~~g~dgv~vh~~ 89 (211)
T cd00429 68 NPERYIEAFAKAGADIITFHAE 89 (211)
T ss_pred CHHHHHHHHHHcCCCEEEECcc
Confidence 3345788899999999988653
No 185
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=47.20 E-value=31 Score=33.61 Aligned_cols=132 Identities=10% Similarity=0.128 Sum_probs=74.2
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccC-CCCe-eEEEEEecChhhhhhhc
Q 018935 58 ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDS-GDRR-VGSIIEVSTPQELQQLQ 127 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~------~e~~~~l~~i~~i~--~l~~~~g~~~~~-~gk~-v~~~~~v~~~ed~e~~~ 127 (348)
.+.+.+..||+.|++.|.++..+ .+.++++..+..-. ++-.+.|.+=.. ++.. ++ ...+++++..++.
T Consensus 85 ~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g--~s~t~~eea~~f~ 162 (281)
T PRK06806 85 MTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIE--MLLTSTTEAKRFA 162 (281)
T ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccc--ceeCCHHHHHHHH
Confidence 47899999999999999998543 33344444433311 122232322111 1111 11 2357888877766
Q ss_pred cccCCCCeEEEeC-------CCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 018935 128 PADGQAENIVIDL-------PDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (348)
Q Consensus 128 ~~~~~~~~vvv~~-------~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (348)
... .+||+-+.. .+...|.+|-|=.--+..+.-|++.=.|-=..+-+-.+.+.|+++|-+.++=
T Consensus 163 ~~t-g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i 233 (281)
T PRK06806 163 EET-DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATAT 233 (281)
T ss_pred Hhh-CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHH
Confidence 543 568887721 2445566664433222334456666533322333556799999999998873
No 186
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=47.18 E-value=15 Score=26.27 Aligned_cols=38 Identities=32% Similarity=0.527 Sum_probs=31.2
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEee
Q 018935 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (348)
Q Consensus 284 v~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE 323 (348)
+.+||.+-.--+|..+|.=..+ .+|+-+..++|.++|.
T Consensus 1 iV~PG~~l~~~~e~~~G~GTY~--~~g~I~asv~G~v~~~ 38 (39)
T PF14382_consen 1 IVVPGDRLGSSEEYMPGHGTYV--RDGNIYASVAGTVKID 38 (39)
T ss_dssp EE-TT-EEEETTTSEESTTEEE--ETTEEEESSSEEEEEE
T ss_pred CCCCCCEeecCCCEecCCCEEE--eCCEEEEEeeEEEEEc
Confidence 3579998888888999999888 5699999999999985
No 187
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=47.17 E-value=31 Score=31.83 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=27.3
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
.+.+.+++|+ .+.+.+..+++.|+|+|+.+..
T Consensus 216 ~~g~~v~~wTvn~~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 216 KKGLLVHPYTVNEKADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEeCCH
Confidence 4567899999 5799999999999999998653
No 188
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=47.05 E-value=22 Score=36.29 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=42.3
Q ss_pred ChhhhhhhccccCC---CCeEEEeCCCCeeeehhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 018935 119 TPQELQQLQPADGQ---AENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 119 ~~ed~e~~~~~~~~---~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
.++|.+++....+. .|+++|+...=--.=.-+.|+.+... +..|++- +-++++|+.+ ++.|+|||.+.
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~L---i~aGAD~ikVg 178 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEEL---ILSGADIVKVG 178 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHH---HHcCCCEEEEc
Confidence 56777777766653 79999987632222222333333322 3456666 7888887755 56799999866
No 189
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=46.88 E-value=1.2e+02 Score=27.29 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=53.8
Q ss_pred eeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCeEEEeCCC-Cee---eehhhhhhccc---CCCceEEE
Q 018935 93 LDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPD-WQV---IPAENIVASFQ---GSGKTVFA 164 (348)
Q Consensus 93 i~~l~~~~g~~~~~~-gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~D-W~i---IPlENliA~~q---~~~~~l~a 164 (348)
|..|.+.+|..+... |++--......++.++-+..... ..+.+.|...+ +.- .-. .+++++- +-+.-+-.
T Consensus 3 ip~idl~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~-g~d~l~v~dl~~~~~~~~~~~-~~i~~i~~~~~~pv~~~G 80 (234)
T cd04732 3 IPAIDLKDGKCVRLYQGDYDKKTVYSDDPVEVAKKWEEA-GAKWLHVVDLDGAKGGEPVNL-ELIEEIVKAVGIPVQVGG 80 (234)
T ss_pred EEEEEeECCEEEEeecccCCCCeEECCCHHHHHHHHHHc-CCCEEEEECCCccccCCCCCH-HHHHHHHHhcCCCEEEeC
Confidence 444666777766432 22211123344665554443333 45555554332 200 001 1222221 12333445
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 018935 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
-++++++|+.++ +.|+|.|++.+.-..+...++++++
T Consensus 81 gI~~~e~~~~~~---~~Gad~vvigs~~l~dp~~~~~i~~ 117 (234)
T cd04732 81 GIRSLEDIERLL---DLGVSRVIIGTAAVKNPELVKELLK 117 (234)
T ss_pred CcCCHHHHHHHH---HcCCCEEEECchHHhChHHHHHHHH
Confidence 678888888776 4799999998875444434444443
No 190
>PF14623 Vint: Hint-domain
Probab=46.64 E-value=33 Score=31.66 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=39.6
Q ss_pred eeEEEecCCce-eeeeeccCCCeEEEEcCCCCeeEEeeeeEEeec--cceeEE
Q 018935 281 HAYVLVPGGKT-CYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES--RPLILV 330 (348)
Q Consensus 281 HaYv~~pggkT-~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~--RPLlLI 330 (348)
++-|.+.+|++ .-.++|++||.|.. ..|..+.+.|=+.+++. -+|..|
T Consensus 6 ~s~V~l~~~~~~v~i~~lR~G~~V~t--p~G~r~V~~Vlkt~v~~~~~~lc~v 56 (162)
T PF14623_consen 6 SSLVTLASGRAPVRIDDLRAGDKVWT--PRGPRKVAAVLKTPVESGSEDLCRV 56 (162)
T ss_pred CcEEEEecCceeEEHHHccCCCEEEC--CCCCeEEEEEEEEeecCCceEEEEE
Confidence 56788889999 99999999999876 55888888888888887 666655
No 191
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=46.32 E-value=27 Score=34.48 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=29.8
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCcchhhhhhc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l 87 (348)
...+++++|| .+.+.+...++.|+|+|+.+. .++.+++
T Consensus 243 ~~G~~v~vWTVNd~~~~~~l~~~GVDgIiTD~--P~~l~~~ 281 (315)
T cd08609 243 KDNVSVNLWVVNEPWLFSLLWCSGVSSVTTNA--CQLLKDM 281 (315)
T ss_pred HCCCEEEEECCCCHHHHHHHHhcCCCEEEcCC--HHHHHHh
Confidence 3567899999 579999999999999999765 3444433
No 192
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=46.31 E-value=63 Score=27.47 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcc--------hhhhhhccceeeeeeeeecCCccccC--CCCeeEEEEEec---Chhhhhhh
Q 018935 60 KQVMTAAVERGWNTFVFLSEN--------QQLAIDWSTIALLDPLFIKEGEVYDS--GDRRVGSIIEVS---TPQELQQL 126 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~--------~e~~~~l~~i~~i~~l~~~~g~~~~~--~gk~v~~~~~v~---~~ed~e~~ 126 (348)
.+.+..|.+.|+|++++.+.. .+..+.+..+ .+. .+.++..|.... +++.+.++
T Consensus 68 ~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i-------------~~~~~~~~pv~iy~~p~~~~~~~~~~~~ 134 (201)
T cd00945 68 VAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAV-------------VEAADGGLPLKVILETRGLKTADEIAKA 134 (201)
T ss_pred HHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHH-------------HHHhcCCceEEEEEECCCCCCHHHHHHH
Q ss_pred ccccCCCCeEEEeCCCC------eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 018935 127 QPADGQAENIVIDLPDW------QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 127 ~~~~~~~~~vvv~~~DW------~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
++.........+...-- ..--+..++..+. ..--+......+....++.++..|++|+++
T Consensus 135 ~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~--~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~ 200 (201)
T cd00945 135 ARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVG--GRVGVKAAGGIKTLEDALAAIEAGADGIGT 200 (201)
T ss_pred HHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcc--cCCcEEEECCCCCHHHHHHHHHhccceeec
No 193
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=46.06 E-value=29 Score=34.32 Aligned_cols=38 Identities=8% Similarity=0.026 Sum_probs=29.8
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCcchhhhhhc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l 87 (348)
...+.+++|| .+.+.|...++.|+|+++.+.. +...++
T Consensus 243 ~~Gl~V~vWTVNd~~~~~~l~~~GVDgIiTD~P--~~l~~~ 281 (316)
T cd08610 243 AANIHTNVYVINEPWLFSLAWCSGIHSVTTNNI--HLLKQL 281 (316)
T ss_pred HCCCEEEEECCCCHHHHHHHHhCCcCEEEeCCH--HHHHHh
Confidence 3567899999 5689999999999999998753 444433
No 194
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=45.95 E-value=1e+02 Score=27.18 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=55.8
Q ss_pred hhHHHHHHHhCCcEEEEcCcc---hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~---~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
.+.+..++++|++.|.++..+ .+..+.+.++..+ ...-|.. .+ +. ++.+.+.. . .++.+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~----------~~~~~~~--l~--~~--~~~~~a~~-~-gad~v 85 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKEL----------CRRYGVP--LI--VN--DRVDLALA-V-GADGV 85 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH----------HHHhCCe--EE--Ee--ChHHHHHH-c-CCCEE
Confidence 467889999999999886432 2222222222111 0111211 12 11 33333222 2 45666
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
.+...+ .|.+. +..+.+....+-..+.|.+|++.+ .+.|+|-|.+.
T Consensus 86 h~~~~~---~~~~~-~~~~~~~~~~~g~~~~t~~e~~~a---~~~gaD~v~~~ 131 (212)
T PRK00043 86 HLGQDD---LPVAD-ARALLGPDAIIGLSTHTLEEAAAA---LAAGADYVGVG 131 (212)
T ss_pred ecCccc---CCHHH-HHHHcCCCCEEEEeCCCHHHHHHH---hHcCCCEEEEC
Confidence 664433 33332 233444555677788888887554 47899999874
No 195
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.11 E-value=2.3e+02 Score=26.02 Aligned_cols=123 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred hHHHHHHHhCCcEEEEcCcchh---------hhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 018935 61 QVMTAAVERGWNTFVFLSENQQ---------LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (348)
Q Consensus 61 ~~vT~ALEsG~~~~v~~~~~~e---------~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~ 131 (348)
+++...-+.|++.+++-.=+.+ .++++.+... -|+...+| |.+.++.+.+.. .
T Consensus 31 ~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~-~pv~~~GG---------------I~s~~d~~~~l~--~ 92 (243)
T cd04731 31 ELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVF-IPLTVGGG---------------IRSLEDARRLLR--A 92 (243)
T ss_pred HHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCC-CCEEEeCC---------------CCCHHHHHHHHH--c
Q ss_pred CCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcC------------------CHHHHHHHHHHhhcccCeEEEec
Q 018935 132 QAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISK------------------TPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 132 ~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~------------------~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
.++.+++... +|.+ +++++.++...+..+-.-++ +.+....+....+.|+|.++++.
T Consensus 93 G~~~v~ig~~~~~~p~~--~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~ 170 (243)
T cd04731 93 GADKVSINSAAVENPEL--IREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTS 170 (243)
T ss_pred CCceEEECchhhhChHH--HHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEec
Q ss_pred CCH---------HHHHHHHHhh
Q 018935 191 EDV---------KAVLALKEYF 203 (348)
Q Consensus 191 ~d~---------~~v~~l~~~~ 203 (348)
-+. +.++++++..
T Consensus 171 i~~~g~~~g~~~~~i~~i~~~~ 192 (243)
T cd04731 171 MDRDGTKKGYDLELIRAVSSAV 192 (243)
T ss_pred cCCCCCCCCCCHHHHHHHHhhC
No 196
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=45.03 E-value=31 Score=30.51 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=35.0
Q ss_pred CCceeEEEec--CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEee-ccceeEEE
Q 018935 278 GPVHAYVLVP--GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIE-SRPLILVE 331 (348)
Q Consensus 278 GaVHaYv~~p--ggkT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE-~RPLlLIe 331 (348)
|-+.=++..- |.-|+||.. |+.||.|.+....|+.. .+-+ .+|+++|=
T Consensus 54 ~~~~~~i~~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~------~~~~~~~~~llia 105 (224)
T cd06187 54 GEIEFHVRAVPGGRVSNALHDELKVGDRVRLSGPYGTFY------LRRDHDRPVLCIA 105 (224)
T ss_pred CEEEEEEEeCCCCcchHHHhhcCccCCEEEEeCCccceE------ecCCCCCCEEEEe
Confidence 4555666664 556899987 99999999999988653 2223 57888764
No 197
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=45.02 E-value=26 Score=31.65 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=33.9
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEe-eccceeEEEE
Q 018935 278 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKI-ESRPLILVEA 332 (348)
Q Consensus 278 GaVHaYv~~-p-ggkT~YLSEL~aG~eVLvV-d~~G~tR~~~VGRvKI-E~RPLlLIeA 332 (348)
|-+.=++.. + |.-|+||.+|+.||.|.+- ...|....-. . ..+|+++|=+
T Consensus 56 ~~i~~~i~~~~~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~-----~~~~~~~vlIag 109 (241)
T cd06195 56 ENLEFYIILVPDGPLTPRLFKLKPGDTIYVGKKPTGFLTLDE-----VPPGKRLWLLAT 109 (241)
T ss_pred CeEEEEEEEecCCCCchHHhcCCCCCEEEECcCCCCceeecC-----CCCCceEEEEee
Confidence 444444432 4 5568899999999999998 8988753211 2 2478888743
No 198
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=45.01 E-value=1.3e+02 Score=31.96 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=65.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 018935 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (348)
+.+...-.+.|.+.++++.+ .+.++++.+. |.+ ..+...++++-++++-. .+++.+|+.
T Consensus 413 ~~va~~L~~~g~~vvvID~d-~~~v~~~~~~-----------------g~~-v~~GDat~~~~L~~agi--~~A~~vv~~ 471 (601)
T PRK03659 413 QVIGRLLMANKMRITVLERD-ISAVNLMRKY-----------------GYK-VYYGDATQLELLRAAGA--EKAEAIVIT 471 (601)
T ss_pred HHHHHHHHhCCCCEEEEECC-HHHHHHHHhC-----------------CCe-EEEeeCCCHHHHHhcCC--ccCCEEEEE
Confidence 44444445678888887764 5555554432 211 35666677777666443 367888887
Q ss_pred CCCCeeeehhhhhh----cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 140 LPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 140 ~~DW~iIPlENliA----~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
..|. -+|+.. +-...+.+|++.++|.++++.... .|+|-|+-.
T Consensus 472 ~~d~----~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~---~Ga~~vv~e 518 (601)
T PRK03659 472 CNEP----EDTMKIVELCQQHFPHLHILARARGRVEAHELLQ---AGVTQFSRE 518 (601)
T ss_pred eCCH----HHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHh---CCCCEEEcc
Confidence 7775 344322 222346699999999999987654 699988744
No 199
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=44.98 E-value=1.5e+02 Score=26.86 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=55.3
Q ss_pred eeeEEEEEEEEEcCCc-ceEEEeecC---CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee------cCCceeE
Q 018935 214 SLMKATVTRVDVAGMG-DRVCVDLCS---LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN------AGPVHAY 283 (348)
Q Consensus 214 ~L~~atVt~V~~vGmG-dRVCVDtcs---ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN------AGaVHaY 283 (348)
....++|++++++.-+ -++.++... -+.||+=+-|. +..+.. ...|||-+- .|-+-=+
T Consensus 16 ~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~--------~~~~~~----~~~r~ysi~s~~~~~~~~l~~~ 83 (243)
T cd06216 16 RELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLG--------VEIDGV----RHWRSYSLSSSPTQEDGTITLT 83 (243)
T ss_pred ceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEE--------EEECCe----EEEEEEeccCCCcCCCCeEEEE
Confidence 3447889999887432 244444322 24555544332 111111 113444443 3334444
Q ss_pred EEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEee-ccceeEEE
Q 018935 284 VLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIE-SRPLILVE 331 (348)
Q Consensus 284 v~~-pgg-kT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE-~RPLlLIe 331 (348)
+.. |+| -|.||.+ |+.||+|.+-...|+-. .+-+ .+|+++|=
T Consensus 84 ik~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~------l~~~~~~~~v~ia 129 (243)
T cd06216 84 VKAQPDGLVSNWLVNHLAPGDVVELSQPQGDFV------LPDPLPPRLLLIA 129 (243)
T ss_pred EEEcCCCcchhHHHhcCCCCCEEEEECCceeee------cCCCCCCCEEEEe
Confidence 444 444 5899986 99999999987777521 1222 58888874
No 200
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=44.45 E-value=1.2e+02 Score=27.08 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=37.0
Q ss_pred CCCeeeecCCc-e----eEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 270 SRPFRVNAGPV-H----AYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 270 ~RPFRVNAGaV-H----aYv~~-pgg-kT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|||-+.--+. . =++.. |+| -|.||.. ++.||+|.+....|+... - .-..+|+++|=
T Consensus 51 ~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l---~--~~~~~~~vlia 115 (236)
T cd06210 51 RRSYSLANTPNWDGRLEFLIRLLPGGAFSTYLETRAKVGQRLNLRGPLGAFGL---R--ENGLRPRWFVA 115 (236)
T ss_pred ceecccCCCCCCCCEEEEEEEEcCCCccchhhhhCcCCCCEEEEecCcceeee---c--CCCCccEEEEc
Confidence 57777754332 1 12332 444 6899987 999999999999997421 1 12347888874
No 201
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=44.41 E-value=63 Score=31.10 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=35.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
...|..+++|.+||+.++ +.|+|.|.|.+=.+++++++.+.+
T Consensus 181 ~~~I~vev~t~eea~~A~---~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 181 EKKIEVEVETLEEAEEAL---EAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred CCeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHh
Confidence 347999999999988775 579999999999999988877665
No 202
>PRK08051 fre FMN reductase; Validated
Probab=44.25 E-value=1.8e+02 Score=26.39 Aligned_cols=95 Identities=21% Similarity=0.200 Sum_probs=53.6
Q ss_pred EEEEEEEEEcCCcce-EEEee--cCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEEe-c
Q 018935 217 KATVTRVDVAGMGDR-VCVDL--CSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVLV-P 287 (348)
Q Consensus 217 ~atVt~V~~vGmGdR-VCVDt--csll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaYv~~-p 287 (348)
+++|+++++++-+=. +.+.. ---+.||+=+.|. -.+- ..|||=+- .|...=++.. |
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~---------~~~~------~~r~ySias~p~~~~~l~~~v~~~~ 68 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVV---------MGEK------DKRPFSIASTPREKGFIELHIGASE 68 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEE---------cCCC------cceeecccCCCCCCCcEEEEEEEcC
Confidence 577888887763321 23321 1135666644443 1111 24666652 3444434555 4
Q ss_pred CCc--eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 288 GGK--TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 288 ggk--T~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
+|+ +.++..|+.||+|.+-...|+.-.. .-..+|+++|=
T Consensus 69 ~~~~~~~~~~~l~~G~~v~v~gP~G~~~~~-----~~~~~~~vlia 109 (232)
T PRK08051 69 LNLYAMAVMERILKDGEIEVDIPHGDAWLR-----EESERPLLLIA 109 (232)
T ss_pred CCcchHHHHHHcCCCCEEEEEcCCCceEcc-----CCCCCcEEEEe
Confidence 443 5667899999999999999975221 01247888874
No 203
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=44.24 E-value=33 Score=32.92 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=27.3
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
+....+++|| .+++.|...++-|+|+|+.+..
T Consensus 259 ~~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 259 KRGIQVYGWVLNDEEEFERAFELGADGVMTDYP 291 (300)
T ss_pred HCCCEEEEeecCCHHHHHHHHhcCCCEEEeCCH
Confidence 3567799999 6799999999999999998654
No 204
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=44.09 E-value=2.2e+02 Score=26.75 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=61.3
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhccce----eeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccc
Q 018935 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPA 129 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~---~~e~~~~l~~i----~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~ed~e~~~~~ 129 (348)
.+.+-+..+++.|++.+++... +.+..+++.+- ..+--+-..+|.+.....-.+.+..-. .+.++...++..
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~ 163 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKE 163 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHH
Confidence 5788899999999999998753 34455554322 111112223333211001122211111 123333333332
Q ss_pred c--CCCCeEEEeCC---------CCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcc-cCeEEEec
Q 018935 130 D--GQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQG-LGGIVLKV 190 (348)
Q Consensus 130 ~--~~~~~vvv~~~---------DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G-~DGVvl~~ 190 (348)
+ ...+.+++... ||.. +..+... .+..|++. +.++++++ ++++.| +|||++.+
T Consensus 164 l~~~G~~~iivt~i~~~g~~~g~~~~~--~~~i~~~---~~ipvia~GGi~s~~di~---~~~~~g~~dgv~~g~ 230 (254)
T TIGR00735 164 VEKLGAGEILLTSMDKDGTKSGYDLEL--TKAVSEA---VKIPVIASGGAGKPEHFY---EAFTKGKADAALAAS 230 (254)
T ss_pred HHHcCCCEEEEeCcCcccCCCCCCHHH--HHHHHHh---CCCCEEEeCCCCCHHHHH---HHHHcCCcceeeEhH
Confidence 2 24677777432 2221 2223222 23445543 57777777 456667 99998844
No 205
>PRK15447 putative protease; Provisional
Probab=44.07 E-value=1.5e+02 Score=28.83 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=69.8
Q ss_pred Ee-CchhHHHHHH-HhCCcEEEEcCcchhhhhhccceeeeeeeee-cCCccccCCCCeeEEEE-Ee-cChhhhhhhcccc
Q 018935 56 WT-ESKQVMTAAV-ERGWNTFVFLSENQQLAIDWSTIALLDPLFI-KEGEVYDSGDRRVGSII-EV-STPQELQQLQPAD 130 (348)
Q Consensus 56 w~-~~K~~vT~AL-EsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~-~~g~~~~~~gk~v~~~~-~v-~~~ed~e~~~~~~ 130 (348)
|- .+.+-+-+|+ ++|+|+|.+..+. ..... . ++.--+ +.-+.+...||++.... .| ..+++++.+....
T Consensus 12 ~p~~~~~~~~~~~~~~gaDaVY~g~~~--~~~R~-~---f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l 85 (301)
T PRK15447 12 WPKETVRDFYQRAADSPVDIVYLGETV--CSKRR-E---LKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLV 85 (301)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECCcc--CCCcc-C---CCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHH
Confidence 55 4778888888 6699999997431 00000 0 110000 01123456677765543 33 3356666665544
Q ss_pred CCC-CeEEEeCCCCeeeehhhhhhcccCCCceEEE----EcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHHHh
Q 018935 131 GQA-ENIVIDLPDWQVIPAENIVASFQGSGKTVFA----ISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALKEY 202 (348)
Q Consensus 131 ~~~-~~vvv~~~DW~iIPlENliA~~q~~~~~l~a----~v~~~~eA~~al~~LE~G~DGVvl~~~-d~~~v~~l~~~ 202 (348)
... +.|+ ..||..+- ++..+ +-.+.+ -+-|..-++.+ .+.|+++|+|..+ +..||+++.+.
T Consensus 86 ~~~~~~v~--v~d~g~l~---~~~e~---~~~l~~d~~lni~N~~a~~~l---~~~G~~rv~ls~ELsl~eI~~i~~~ 152 (301)
T PRK15447 86 ENGEFLVE--ANDLGAVR---LLAER---GLPFVAGPALNCYNAATLALL---ARLGATRWCMPVELSRDWLANLLAQ 152 (301)
T ss_pred hcCCCEEE--EeCHHHHH---HHHhc---CCCEEEecccccCCHHHHHHH---HHcCCcEEEECCcCCHHHHHHHHHh
Confidence 432 3233 45666552 22221 222333 24555555544 4579999999999 56888777554
No 206
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=43.85 E-value=1.4e+02 Score=28.08 Aligned_cols=122 Identities=23% Similarity=0.193 Sum_probs=79.8
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (348)
-.+++.+.++.|+..+=++-.+.+-.+.+..+..- .+ +..+ --..|.++++.+.+... .++++|-
T Consensus 22 a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~----------~~--~~~v-GAGTVl~~~~a~~a~~a--GA~Fivs 86 (204)
T TIGR01182 22 ALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKE----------VP--DALI-GAGTVLNPEQLRQAVDA--GAQFIVS 86 (204)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHH----------CC--CCEE-EEEeCCCHHHHHHHHHc--CCCEEEC
Confidence 46788999999999887775432222222222110 01 1222 33478999997776542 5677754
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhhc
Q 018935 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYFD 204 (348)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d----~~~v~~l~~~~~ 204 (348)
-..| ++++...+..+--.+--+-++.|+.. +++.|+|-|=+-|-+ ++-++.|+..+.
T Consensus 87 P~~~------~~v~~~~~~~~i~~iPG~~TptEi~~---A~~~Ga~~vKlFPA~~~GG~~yikal~~plp 147 (204)
T TIGR01182 87 PGLT------PELAKHAQDHGIPIIPGVATPSEIML---ALELGITALKLFPAEVSGGVKMLKALAGPFP 147 (204)
T ss_pred CCCC------HHHHHHHHHcCCcEECCCCCHHHHHH---HHHCCCCEEEECCchhcCCHHHHHHHhccCC
Confidence 3333 36777777777788999999999764 578999999998876 566777666653
No 207
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=43.27 E-value=28 Score=30.90 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=34.2
Q ss_pred CCceeEEEec--CCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 278 GPVHAYVLVP--GGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 278 GaVHaYv~~p--ggkT~YLS-EL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|-+.=+|..- |.-|+||. .|+.||+|.+-...|..... .-+.+|+++|=
T Consensus 59 ~~l~~~vk~~~~G~~s~~l~~~~~~G~~v~i~gP~G~f~~~-----~~~~~~~vlIa 110 (231)
T cd06215 59 DSLSITVKRVPGGLVSNWLHDNLKVGDELWASGPAGEFTLI-----DHPADKLLLLS 110 (231)
T ss_pred CcEEEEEEEcCCCcchHHHHhcCCCCCEEEEEcCcceeEeC-----CCCCCcEEEEe
Confidence 3355566554 66799996 79999999999998864221 11258888874
No 208
>PRK13794 hypothetical protein; Provisional
Probab=42.88 E-value=32 Score=35.84 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=35.1
Q ss_pred eeeecCCc-----eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeecc
Q 018935 273 FRVNAGPV-----HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESR 325 (348)
Q Consensus 273 FRVNAGaV-----HaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~R 325 (348)
-.|+.|++ +-.-.++-|-+.-=.+++.||+|+|++.+|+ ..-||++++-..
T Consensus 127 V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~~gd~V~Iv~~~g~--~iavG~a~~s~~ 182 (479)
T PRK13794 127 IVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVIILDENGD--VVGVGRARMSYE 182 (479)
T ss_pred EEECccHHHHHHhCCCeecCCceEEecCCcCCCCEEEEEcCCCc--EEEEEEeecCHH
Confidence 45666765 2333334445555567899999999999986 688999986433
No 209
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=42.86 E-value=1.8e+02 Score=27.64 Aligned_cols=121 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceee-eee--eeecCC--------------------------
Q 018935 58 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIAL-LDP--LFIKEG-------------------------- 101 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~--~~v~~~~~-----~e~~~~l~~i~~-i~~--l~~~~g-------------------------- 101 (348)
.+.+-+.+|.+.|+| +|||.+.. .+.++++.+-.. +.. ++.+..
T Consensus 10 t~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~~~~ 89 (208)
T COG0135 10 TRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDEDPEY 89 (208)
T ss_pred CCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCCCHHH
Q ss_pred --ccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCC------------CCeeeehhhhhhcccCCCceEEEEcC
Q 018935 102 --EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP------------DWQVIPAENIVASFQGSGKTVFAISK 167 (348)
Q Consensus 102 --~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~------------DW~iIPlENliA~~q~~~~~l~a~v~ 167 (348)
.+...-+.++--.+.+....+++........++.++++.. ||+++|-- .....-++|-==
T Consensus 90 ~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~~~LAGGL 163 (208)
T COG0135 90 IDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKPVMLAGGL 163 (208)
T ss_pred HHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCCEEEECCC
Q ss_pred CHHHHHHHHHHhh-cccC
Q 018935 168 TPSEAQIFLEALE-QGLG 184 (348)
Q Consensus 168 ~~~eA~~al~~LE-~G~D 184 (348)
|++..+.++...- .|+|
T Consensus 164 ~p~NV~~ai~~~~p~gvD 181 (208)
T COG0135 164 NPDNVAEAIALGPPYGVD 181 (208)
T ss_pred CHHHHHHHHHhcCCceEE
No 210
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=42.80 E-value=59 Score=31.50 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
..|..++.|.+||..+ ++.|+|.|.|.+=++.+++++.+.+
T Consensus 184 ~~IgVev~t~eea~~A---~~~gaD~I~ld~~~p~~l~~~~~~~ 224 (272)
T cd01573 184 KKIVVEVDSLEEALAA---AEAGADILQLDKFSPEELAELVPKL 224 (272)
T ss_pred CeEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHH
Confidence 4688999999998776 4799999999999998887766654
No 211
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=42.45 E-value=92 Score=26.24 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=39.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~ 200 (348)
..|.++++..-...-.+ .++..++. ....++... +..+......+++.|+++++.+|-+..++....
T Consensus 44 ~~dlvild~~l~~~~g~-~~~~~i~~~~~~~~ii~lt-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i 112 (219)
T PRK10336 44 PYDAVILDLTLPGMDGR-DILREWREKGQREPVLILT-ARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 (219)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHH
Confidence 45777775432222111 22333222 234455544 445556667889999999999999988775443
No 212
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=42.30 E-value=47 Score=29.45 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=23.0
Q ss_pred eeEEEecCCceeeee--eccCCCeEEEEcCCCCe
Q 018935 281 HAYVLVPGGKTCYLS--ELKSGKEVIVVDQKGRQ 312 (348)
Q Consensus 281 HaYv~~pggkT~YLS--EL~aG~eVLvVd~~G~t 312 (348)
|..+..-|..-++.+ ++.+||+|.+|+.+|.+
T Consensus 101 ~g~Vkv~g~~Wra~~~~~l~~G~~V~Vv~v~G~~ 134 (140)
T COG1585 101 RGRVKVEGESWRARSDEDLPAGDRVEVVGVEGAT 134 (140)
T ss_pred eEEEEECCeEeEEecCCCCCCCCEEEEEEeeCCE
Confidence 345555555545444 78899999999999984
No 213
>PHA00440 host protein H-NS-interacting protein
Probab=42.14 E-value=16 Score=31.33 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEE
Q 018935 168 TPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (348)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~~~~~~~~~~l~L~~atVt~V 223 (348)
|+-+.+....+|-+|.||++--.---+--..+|+...+ -..+..+...||||..+
T Consensus 43 ~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E-~~d~~~~k~sPATvRev 97 (98)
T PHA00440 43 NPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEE-STDKDLFKFSPATVREV 97 (98)
T ss_pred ChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHh-hccCcceeecCceEEec
Confidence 89999999999999999987322111111223333332 12455689999999875
No 214
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=42.03 E-value=31 Score=31.04 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~ 77 (348)
.+.+.+++|+ .+++.+..+++.|+|+|+.+
T Consensus 188 ~~G~~v~~wtvn~~~~~~~~~~~Gvd~i~TD 218 (220)
T cd08579 188 QNGKKVYVWTVNDPDDMQRYLAMGVDGIITD 218 (220)
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEeCC
Confidence 4577899999 57999999999999998854
No 215
>PRK09483 response regulator; Provisional
Probab=41.99 E-value=1.7e+02 Score=24.71 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=28.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
...++.... ..+......+++.|++|.+.+|.++.++.+.
T Consensus 75 ~~~ii~ls~-~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~ 114 (217)
T PRK09483 75 DVKIIMLTV-HTENPLPAKVMQAGAAGYLSKGAAPQEVVSA 114 (217)
T ss_pred CCeEEEEeC-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 345555543 3445555788999999999999988776543
No 216
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=41.95 E-value=1.3e+02 Score=28.44 Aligned_cols=129 Identities=12% Similarity=-0.021 Sum_probs=64.5
Q ss_pred CchhHHHHHHHhCCcEEEEcCc---chhhhhhcccee--eeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC-
Q 018935 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--LLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG- 131 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~---~~e~~~~l~~i~--~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~- 131 (348)
++.+.+...++.|++.+++... +.++.+++.+.- ++ .+.+|- .. ++++..++.-.-..+.-++..+.....
T Consensus 84 rs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~i-vvslD~-k~-~g~~~~v~~~Gw~~~~~~~~~~~~~~~~ 160 (243)
T TIGR01919 84 RDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIV-AVGLDV-LE-DGEWHTLGNRGWSDGGGDLEVLERLLDS 160 (243)
T ss_pred CCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccE-EEEEEE-ec-CCceEEEECCCeecCCCcHHHHHHHHHh
Confidence 6899999999999999998753 345555543321 11 122221 00 111112221111112223333332222
Q ss_pred -CCCeEEEeCCC---C-eeeehhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 132 -QAENIVIDLPD---W-QVIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 132 -~~~~vvv~~~D---W-~iIPlENliA~~q-~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
....+|+..-| = +=+.+| ++.++. ..+..|++ -+++.+|-+.+-..-+.|+|||++..
T Consensus 161 ~g~~~ii~tdI~~dGt~~G~d~~-l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~ 226 (243)
T TIGR01919 161 GGCSRVVVTDSKKDGLSGGPNEL-LLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGK 226 (243)
T ss_pred CCCCEEEEEecCCcccCCCcCHH-HHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhH
Confidence 23455553211 1 122333 222222 23446665 48999999877555578999999754
No 217
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=41.94 E-value=67 Score=30.11 Aligned_cols=126 Identities=14% Similarity=0.205 Sum_probs=67.1
Q ss_pred hhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 018935 60 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~-e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (348)
...+..=.+.|+|.+.|..|.. +..+-+.. +++.|.+.|..+.-.++- +.+.......|.+++
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~--------------ik~~g~k~GlalnP~Tp~--~~i~~~l~~~D~vlv 134 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHVDRTLQL--------------IKEHGCQAGVVLNPATPL--HHLEYIMDKVDLILL 134 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHHH--------------HHHcCCcEEEEeCCCCCH--HHHHHHHHhCCeEEE
Confidence 4456667789999999887621 11121111 233466666665554432 233333446677777
Q ss_pred -----eCCCCeeee--hhh---hhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HHHHHHHH
Q 018935 139 -----DLPDWQVIP--AEN---IVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAVLALKE 201 (348)
Q Consensus 139 -----~~~DW~iIP--lEN---liA~~q~~~-~~l~a~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~-~~v~~l~~ 201 (348)
.|.+.+.|| +|. +-+..++.+ .-.+.+-.... .+.+-.+.+.|+|++++- .+|+ +.++++++
T Consensus 135 MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 345777877 332 222222111 12233333343 556668889999999764 3454 33444444
Q ss_pred h
Q 018935 202 Y 202 (348)
Q Consensus 202 ~ 202 (348)
.
T Consensus 214 ~ 214 (220)
T PRK08883 214 E 214 (220)
T ss_pred H
Confidence 3
No 218
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.93 E-value=1.7e+02 Score=27.30 Aligned_cols=103 Identities=12% Similarity=0.107 Sum_probs=57.2
Q ss_pred eeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCC----eeeehhhhhhcc-cCCCceEE--EE
Q 018935 93 LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW----QVIPAENIVASF-QGSGKTVF--AI 165 (348)
Q Consensus 93 i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW----~iIPlENliA~~-q~~~~~l~--a~ 165 (348)
|..|.+.+|..+..... .......++.++-+..... .++.+.+...|= +-..++.+ .++ +..+..|+ .-
T Consensus 7 ip~idl~~g~~V~~~~~--~~~~~~~d~~~~a~~~~~~-G~~~i~i~dl~~~~~~~~~~~~~i-~~i~~~~~ipv~~~GG 82 (253)
T PRK02083 7 IPCLDVKDGRVVKGVNF--VNLRDAGDPVELAKRYNEE-GADELVFLDITASSEGRDTMLDVV-ERVAEQVFIPLTVGGG 82 (253)
T ss_pred EEEEEEECCEEEEeEEe--cceeecCCHHHHHHHHHHc-CCCEEEEEeCCcccccCcchHHHH-HHHHHhCCCCEEeeCC
Confidence 44466677766653221 1112344676666655544 345555544432 22333333 222 22223344 47
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHh
Q 018935 166 SKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEY 202 (348)
Q Consensus 166 v~~~~eA~~al~~LE~G~DGVvl~~---~d~~~v~~l~~~ 202 (348)
+++.++++.++. .|+|+|++.+ .||+.+.++.+.
T Consensus 83 i~s~~~~~~~l~---~Ga~~Viigt~~l~~p~~~~ei~~~ 119 (253)
T PRK02083 83 IRSVEDARRLLR---AGADKVSINSAAVANPELISEAADR 119 (253)
T ss_pred CCCHHHHHHHHH---cCCCEEEEChhHhhCcHHHHHHHHH
Confidence 889999888866 6999999999 566666555443
No 219
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=41.91 E-value=71 Score=30.55 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=43.0
Q ss_pred cChhhhhhhccccC---CCCeEEEeCC-CC-eeeehhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 118 STPQELQQLQPADG---QAENIVIDLP-DW-QVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 118 ~~~ed~e~~~~~~~---~~~~vvv~~~-DW-~iIPlENliA~~q---~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
.+++|+...+.+.+ ..+.+-++.. .+ .-+|.|.+=+-.+ +..--+-..++|.++|+.++ +.|+|+|++-
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~---~aGAD~VVVG 208 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA---EAGADTIVTG 208 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH---HcCCCEEEEC
Confidence 35666555444443 4578888843 33 4466665422211 22333455688999988755 6699999998
Q ss_pred cC
Q 018935 190 VE 191 (348)
Q Consensus 190 ~~ 191 (348)
+-
T Consensus 209 s~ 210 (223)
T TIGR01768 209 NV 210 (223)
T ss_pred cH
Confidence 74
No 220
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=41.86 E-value=1.8e+02 Score=26.28 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=50.0
Q ss_pred eeecCCcccc-CCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCC-eee--ehhhhhhcc-cCCCc--eEEEEcCC
Q 018935 96 LFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW-QVI--PAENIVASF-QGSGK--TVFAISKT 168 (348)
Q Consensus 96 l~~~~g~~~~-~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW-~iI--PlENliA~~-q~~~~--~l~a~v~~ 168 (348)
|.+.+|..++ -+|..-.......+|.++-......+...-.|++-... +-. .++. |+++ +.... .+=.-+++
T Consensus 5 id~~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~-i~~i~~~~~~pi~~ggGI~~ 83 (230)
T TIGR00007 5 IDIKDGKCVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPV-IKKIVRETGVPVQVGGGIRS 83 (230)
T ss_pred EEeeCCEEEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHH-HHHHHHhcCCCEEEeCCcCC
Confidence 4556666554 22322222222246666555443333333444433332 122 2332 2222 22222 23347788
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
.++++.+++ .|+|.|++.+.-..+...+++++
T Consensus 84 ~ed~~~~~~---~Ga~~vvlgs~~l~d~~~~~~~~ 115 (230)
T TIGR00007 84 LEDVEKLLD---LGVDRVIIGTAAVENPDLVKELL 115 (230)
T ss_pred HHHHHHHHH---cCCCEEEEChHHhhCHHHHHHHH
Confidence 888877765 79999999864333333344444
No 221
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=41.84 E-value=48 Score=30.99 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=32.1
Q ss_pred hhhhhhcccCCCceEEEE-----cCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 018935 148 AENIVASFQGSGKTVFAI-----SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (348)
Q Consensus 148 lENliA~~q~~~~~l~a~-----v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~ 197 (348)
-+.+|..++..+-.+++- +++.++++.+ ++.|+|||+ ||.|+.+.
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l---~~~Gvdgii--TD~p~~~~ 261 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVY---LELGVDCIC--PNDPVLLV 261 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHH---HHcCCCEEE--cCCHHHHH
Confidence 367788888777777766 4666777665 478999976 66776543
No 222
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=41.81 E-value=1.8e+02 Score=25.80 Aligned_cols=90 Identities=13% Similarity=0.016 Sum_probs=51.5
Q ss_pred eEEEEEecChhh--hhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHH-HHHHHHHhhcccCeEE
Q 018935 111 VGSIIEVSTPQE--LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-AQIFLEALEQGLGGIV 187 (348)
Q Consensus 111 v~~~~~v~~~ed--~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~e-A~~al~~LE~G~DGVv 187 (348)
+..-.++.++.. .+.+. ...++++++....-. .=++.++..+++.+.+++..+.++.+ .+.+..+++.|+|-|-
T Consensus 55 i~~d~k~~d~~~~~~~~~~--~~Gad~i~vh~~~~~-~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~ 131 (206)
T TIGR03128 55 VLADLKTMDAGEYEAEQAF--AAGADIVTVLGVADD-ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIG 131 (206)
T ss_pred EEEEEeeccchHHHHHHHH--HcCCCEEEEeccCCH-HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEE
Confidence 333334556653 33322 236788888776421 11366777777777788877644422 2333444677999888
Q ss_pred EecC---------CHHHHHHHHHhh
Q 018935 188 LKVE---------DVKAVLALKEYF 203 (348)
Q Consensus 188 l~~~---------d~~~v~~l~~~~ 203 (348)
+.|. .++.++++++.+
T Consensus 132 ~~pg~~~~~~~~~~~~~i~~l~~~~ 156 (206)
T TIGR03128 132 VHTGLDEQAKGQNPFEDLQTILKLV 156 (206)
T ss_pred EcCCcCcccCCCCCHHHHHHHHHhc
Confidence 8653 344555555544
No 223
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=41.63 E-value=12 Score=36.86 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=16.2
Q ss_pred eEEEeecCCCCCCceEEE
Q 018935 231 RVCVDLCSLMRPGEGLLV 248 (348)
Q Consensus 231 RVCVDtcsll~~GEGmLV 248 (348)
.||+|||-.+..|.|+..
T Consensus 171 gvCiDtcH~~Aagy~~~~ 188 (280)
T COG0648 171 GVCIDTCHAFAAGYDIIT 188 (280)
T ss_pred EEEEEchhhhhccCCcCc
Confidence 489999999999999865
No 224
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=41.54 E-value=82 Score=24.34 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=39.0
Q ss_pred eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeE-EeeccceeEEEEEECCEeee
Q 018935 281 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRV-KIESRPLILVEAKVIKLFTA 340 (348)
Q Consensus 281 HaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRv-KIE~RPLlLIeAe~~G~~~~ 340 (348)
.+|+++=.| .|+.||+|.+.+.++..+...|+++ .+..+.+.-++.-.-|.|.+
T Consensus 17 i~~~Rv~sG------~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~ 71 (86)
T cd03691 17 IAIGRIFRG------TVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVA 71 (86)
T ss_pred EEEEEEEeC------EEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEE
Confidence 488888555 5889999999988765666777777 56667667666666666554
No 225
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=41.17 E-value=1.4e+02 Score=27.91 Aligned_cols=118 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEe------------cChhhhhh
Q 018935 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV------------STPQELQQ 125 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v------------~~~ed~e~ 125 (348)
++.+-+..+++.|++.+++...-...-+.+.++ ...-+.++..-+.+ ....-++.
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i-------------~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~ 151 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARV-------------IAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEV 151 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHH-------------HHHhhhhEEEEEEEeccEeccCCeeecCccHHHH
Q ss_pred hccccC-CCCeEEEeCCCC----eeeehhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEE
Q 018935 126 LQPADG-QAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 126 ~~~~~~-~~~~vvv~~~DW----~iIPlENliA~~q~~~~~l~a~v--~~~~eA~~al~~LE~G~DGVvl 188 (348)
+..... .++.+++...+= +=+.+|-+-.-.+.....|++.= .|++|++.++...+.|+|||++
T Consensus 152 ~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 152 LERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred HHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
No 226
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=40.99 E-value=56 Score=21.39 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=27.2
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccce
Q 018935 287 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (348)
Q Consensus 287 pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPL 327 (348)
|+|+.-|.+.- .++.|.++|.+.. .+++++++-..|-
T Consensus 1 pd~~~lyv~~~-~~~~v~~id~~~~---~~~~~i~vg~~P~ 37 (42)
T TIGR02276 1 PDGTKLYVTNS-GSNTVSVIDTATN---KVIATIPVGGYPF 37 (42)
T ss_pred CCCCEEEEEeC-CCCEEEEEECCCC---eEEEEEECCCCCc
Confidence 67888888774 4778899997432 5777888877674
No 227
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=40.96 E-value=1.2e+02 Score=29.69 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=57.8
Q ss_pred hHHHHHHHhCCcEEEEcCcc--hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 018935 61 QVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 61 ~~vT~ALEsG~~~~v~~~~~--~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (348)
+.+..+++.+++.|.+.-.. .+.++.+..- | +.++..+.+.++...+.. . .+|.+|+
T Consensus 104 ~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~-----------------g--i~v~~~v~s~~~A~~a~~-~-G~D~iv~ 162 (330)
T PF03060_consen 104 EQLDVALEAKPDVVSFGFGLPPPEVIERLHAA-----------------G--IKVIPQVTSVREARKAAK-A-GADAIVA 162 (330)
T ss_dssp HHHHHHHHS--SEEEEESSSC-HHHHHHHHHT-----------------T---EEEEEESSHHHHHHHHH-T-T-SEEEE
T ss_pred cccccccccceEEEEeecccchHHHHHHHHHc-----------------C--CccccccCCHHHHHHhhh-c-CCCEEEE
Confidence 34555566666677776332 2333333322 3 235668899888655433 2 5888998
Q ss_pred eCC------CC---eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 139 DLP------DW---QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 139 ~~~------DW---~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
.+. +. ....|...+.+.- +.-||+ +.-.-+.+-+..+|..|+|||.+-|.
T Consensus 163 qG~eAGGH~g~~~~~~~~L~~~v~~~~--~iPVia-AGGI~dg~~iaaal~lGA~gV~~GTr 221 (330)
T PF03060_consen 163 QGPEAGGHRGFEVGSTFSLLPQVRDAV--DIPVIA-AGGIADGRGIAAALALGADGVQMGTR 221 (330)
T ss_dssp E-TTSSEE---SSG-HHHHHHHHHHH---SS-EEE-ESS--SHHHHHHHHHCT-SEEEESHH
T ss_pred eccccCCCCCccccceeeHHHHHhhhc--CCcEEE-ecCcCCHHHHHHHHHcCCCEeecCCe
Confidence 763 21 2344444444433 234555 67777888888999999999998653
No 228
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=40.48 E-value=40 Score=31.17 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=25.5
Q ss_pred ceeeeeec-cCCCeEEEEcCCC-CeeEEeeeeEEeeccceeEEE
Q 018935 290 KTCYLSEL-KSGKEVIVVDQKG-RQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 290 kT~YLSEL-~aG~eVLvVd~~G-~tR~~~VGRvKIE~RPLlLIe 331 (348)
-|.||.++ +.||+|.+...-| .... -+ +.+|++||=
T Consensus 79 ~S~~L~~~~~~Gd~v~i~gp~gg~F~~-----~~-~~~~~vlIA 116 (245)
T cd06200 79 GSGWLTRHAPIGASVALRLRENPGFHL-----PD-DGRPLILIG 116 (245)
T ss_pred echhhhhCCCCCCEEEEEecCCCcccC-----CC-CCCCEEEEe
Confidence 78999874 8999999987544 3321 12 568999883
No 229
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=40.45 E-value=37 Score=33.97 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=30.7
Q ss_pred ec-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 286 VP-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 286 ~p-ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.| |.-|.||.+|+.||+|.+-...|+.-.. . +.||+++|=
T Consensus 237 ~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~-----~-~~~~lvlIA 277 (405)
T TIGR01941 237 IPPGIMSSYIFSLKPGDKVTISGPFGEFFAK-----D-TDAEMVFIG 277 (405)
T ss_pred CCCCcHHHHHhcCCCcCEEEEEeccCCCeec-----C-CCCCEEEEe
Confidence 35 4457999999999999999999986321 1 458998873
No 230
>PRK13856 two-component response regulator VirG; Provisional
Probab=40.41 E-value=2e+02 Score=25.27 Aligned_cols=67 Identities=25% Similarity=0.182 Sum_probs=38.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..|.++++..-...=.+ .++..+.. ....++.......+......+++.|+|+++.+|-++.++.+.
T Consensus 45 ~~dlvi~d~~l~~~~g~-~l~~~i~~~~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~ 112 (241)
T PRK13856 45 TVDVVVVDLNLGREDGL-EIVRSLATKSDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLAR 112 (241)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHH
Confidence 45777774332221111 13333321 234455555433334445688999999999999999887543
No 231
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=40.34 E-value=24 Score=36.02 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.1
Q ss_pred CCHHHHH-HHHHHhhcccCeEEEecCCHHHHHHHHH
Q 018935 167 KTPSEAQ-IFLEALEQGLGGIVLKVEDVKAVLALKE 201 (348)
Q Consensus 167 ~~~~eA~-~al~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (348)
.+-+|.+ ..-.+||.|+|+||..|.|.+.+++|..
T Consensus 12 ~~WeekK~~it~alEaG~d~vvv~~~dvervkeLGn 47 (376)
T COG1465 12 ESWEEKKKRITAALEAGVDVVVVRPADVERVKELGN 47 (376)
T ss_pred cchhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCc
Confidence 3556664 4456899999999999999999988865
No 232
>PRK14560 putative RNA-binding protein; Provisional
Probab=40.11 E-value=49 Score=29.30 Aligned_cols=53 Identities=30% Similarity=0.468 Sum_probs=38.3
Q ss_pred eeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccce
Q 018935 273 FRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (348)
Q Consensus 273 FRVNAGaVH-----aYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPL 327 (348)
+-|+.|++. |-+++||= +..=.+++.||.|.|++.+ +...+-||++++-..-|
T Consensus 79 v~Vd~~a~~~i~~Ga~lm~pGV-~~~~~~~~~Gd~V~I~~~~-~~~~vavG~~~~s~~ei 136 (160)
T PRK14560 79 VVVDAGAVKFVSNGADVMAPGI-VEADEDIKEGDIVFVVEET-HGKPLAVGRALMDGDEM 136 (160)
T ss_pred EEEeccHHHHHHCCCceecCee-eeCCCCCCCCCEEEEEECC-CCeEEEEEEEeeCHHHH
Confidence 778888775 45555543 3555689999999999975 23568999999876554
No 233
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=40.11 E-value=1.1e+02 Score=31.97 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=45.5
Q ss_pred EEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC--eEEEecCC
Q 018935 115 IEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG--GIVLKVED 192 (348)
Q Consensus 115 ~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D--GVvl~~~d 192 (348)
-=|.+++|+..+.. .++-++|-..-.+-=-+...+.+|.... -=|+..++++||+.+.+ .|+| |+++.+.+
T Consensus 217 SGI~t~~d~~~~~~---~~davLiG~~lm~~~d~~~~~~~L~~~~-vKICGit~~eda~~a~~---~GaD~lGfIf~~~S 289 (454)
T PRK09427 217 SGIYTHAQVRELSP---FANGFLIGSSLMAEDDLELAVRKLILGE-NKVCGLTRPQDAKAAYD---AGAVYGGLIFVEKS 289 (454)
T ss_pred CCCCCHHHHHHHHh---cCCEEEECHHHcCCCCHHHHHHHHhccc-cccCCCCCHHHHHHHHh---CCCCEEeeEeCCCC
Confidence 34788999888742 3777777333222222233333332221 23678888898887655 6887 67765544
Q ss_pred -----HHHHHHHHH
Q 018935 193 -----VKAVLALKE 201 (348)
Q Consensus 193 -----~~~v~~l~~ 201 (348)
+++++++.+
T Consensus 290 pR~V~~~~a~~i~~ 303 (454)
T PRK09427 290 PRYVSLEQAQEIIA 303 (454)
T ss_pred CCCCCHHHHHHHHH
Confidence 455555444
No 234
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=40.06 E-value=2.8e+02 Score=24.87 Aligned_cols=99 Identities=23% Similarity=0.318 Sum_probs=56.5
Q ss_pred EEEEEEEEEcCCcce-EEEeec------CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCC----ceeEEE
Q 018935 217 KATVTRVDVAGMGDR-VCVDLC------SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGP----VHAYVL 285 (348)
Q Consensus 217 ~atVt~V~~vGmGdR-VCVDtc------sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGa----VHaYv~ 285 (348)
.++|++++++.-+-+ +++..- ..+.+|+=+.|.-.. + .+ -.+|||-+-..+ ++=++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~--------~---g~-~~~r~ysi~s~~~~~~l~~~i~ 70 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPI--------D---GE-EVRRSYSICSSPGDDELRITVK 70 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeec--------C---CC-eeeeeeeecCCCCCCcEEEEEE
Confidence 467888888864443 344431 135566544432110 1 11 124777765433 444454
Q ss_pred e-cCC-ceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 286 V-PGG-KTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 286 ~-pgg-kT~YLS-EL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
. ++| -|.||. .++.||+|.+....|+-....-. ..+|+++|=
T Consensus 71 ~~~~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~----~~~~~llia 115 (241)
T cd06214 71 RVPGGRFSNWANDELKAGDTLEVMPPAGRFTLPPLP----GARHYVLFA 115 (241)
T ss_pred EcCCCccchhHHhccCCCCEEEEeCCccccccCCCC----CCCcEEEEe
Confidence 3 444 589996 89999999998888855222110 257888764
No 235
>PRK06247 pyruvate kinase; Provisional
Probab=40.06 E-value=85 Score=33.23 Aligned_cols=132 Identities=19% Similarity=0.251 Sum_probs=87.0
Q ss_pred CchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
.|++.+.-|++-|+|.|-... .+++.++++.++- ++.+..+.+|.+++.++.+-.-....|-+
T Consensus 174 kD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l----------------~~~~~iiaKIEt~eav~nldeI~~~~DgI 237 (476)
T PRK06247 174 KDRADLEFALELGVDWVALSFVQRPEDVEEVRKII----------------GGRVPVMAKIEKPQAIDRLEAIVEASDAI 237 (476)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh----------------hhcCeEEEEECCHHHHHhHHHHHHHcCEE
Confidence 478889999999999765442 2345555555551 22356788999999988877766668888
Q ss_pred EEeCCC-Ceeeehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 018935 137 VIDLPD-WQVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (348)
Q Consensus 137 vv~~~D-W~iIPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (348)
.|--.| .--+|+|++-. .+...+.-+|.. ..+-.|+--.+.+..-|+|||+|..+.
T Consensus 238 mVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~y 317 (476)
T PRK06247 238 MVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKY 317 (476)
T ss_pred EEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCC
Confidence 884444 44577776544 221222223321 234477778888999999999999553
Q ss_pred -HHHHHHHHHhhcc
Q 018935 193 -VKAVLALKEYFDG 205 (348)
Q Consensus 193 -~~~v~~l~~~~~~ 205 (348)
.+.|+-+.+++.+
T Consensus 318 PveaV~~m~~I~~~ 331 (476)
T PRK06247 318 PVEAVRTMARIIRQ 331 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 3667777777653
No 236
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=39.88 E-value=1.4e+02 Score=26.65 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=39.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..|.++++..-+..=-+ .++..+.. ....++.... .++......+++.|++|.+.+|-+++++.+.
T Consensus 50 ~pdlvllD~~mp~~~gl-e~~~~l~~~~~~~~iivls~-~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~ 117 (225)
T PRK10046 50 KPGLILLDNYLPDGRGI-NLLHELVQAHYPGDVVFTTA-ASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 (225)
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCccEEEECCcCHHHHHHH
Confidence 45777775443222111 23333322 2345555443 3445677889999999999999998877543
No 237
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=39.82 E-value=1.8e+02 Score=25.65 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=33.6
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeec-cceeEEE
Q 018935 278 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES-RPLILVE 331 (348)
Q Consensus 278 GaVHaYv~~-p-ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~-RPLlLIe 331 (348)
|-+.=+|.. | |.-|+||..++.||+|.+-...|..... .-.. +|+++|=
T Consensus 60 ~~~~~~v~~~~~G~~s~~l~~~~~G~~v~i~gP~G~~~~~-----~~~~~~~~vlia 111 (234)
T cd06183 60 GYFDLLIKIYPGGKMSQYLHSLKPGDTVEIRGPFGKFEYK-----PNGKVKHIGMIA 111 (234)
T ss_pred CEEEEEEEECCCCcchhHHhcCCCCCEEEEECCccceeec-----CCCCccEEEEEc
Confidence 445556665 4 5569999999999999998888864221 0112 7888773
No 238
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.75 E-value=2.7e+02 Score=26.09 Aligned_cols=124 Identities=15% Similarity=-0.004 Sum_probs=75.4
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (348)
-.+++.+.++.|+..+=++-.+..-.+.+..+..- .+.+..-+.--..|.++++.+.+... .++++|-
T Consensus 27 a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~----------~~~~p~~~vGaGTV~~~~~~~~a~~a--GA~Fivs 94 (213)
T PRK06552 27 ALKISLAVIKGGIKAIEVTYTNPFASEVIKELVEL----------YKDDPEVLIGAGTVLDAVTARLAILA--GAQFIVS 94 (213)
T ss_pred HHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHH----------cCCCCCeEEeeeeCCCHHHHHHHHHc--CCCEEEC
Confidence 36678888899998766654332222222222110 00000122234478999987665542 5677774
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC---HHHHHHHHHhh
Q 018935 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED---VKAVLALKEYF 203 (348)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d---~~~v~~l~~~~ 203 (348)
-..+ +.++......+--++-.+.|++|+..+ ++.|+|-|-+-|.+ ++.++.++..+
T Consensus 95 P~~~------~~v~~~~~~~~i~~iPG~~T~~E~~~A---~~~Gad~vklFPa~~~G~~~ik~l~~~~ 153 (213)
T PRK06552 95 PSFN------RETAKICNLYQIPYLPGCMTVTEIVTA---LEAGSEIVKLFPGSTLGPSFIKAIKGPL 153 (213)
T ss_pred CCCC------HHHHHHHHHcCCCEECCcCCHHHHHHH---HHcCCCEEEECCcccCCHHHHHHHhhhC
Confidence 3333 456666666677899999999999766 57999999996655 45555555544
No 239
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=39.74 E-value=2e+02 Score=25.96 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=26.8
Q ss_pred EEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 162 VFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 162 l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
+-.-+++.++++.++. .|+|+|++.+.-......++++.
T Consensus 79 ~~GGI~~~ed~~~~~~---~Ga~~vilg~~~l~~~~~l~ei~ 117 (233)
T PRK00748 79 VGGGIRSLETVEALLD---AGVSRVIIGTAAVKNPELVKEAC 117 (233)
T ss_pred EcCCcCCHHHHHHHHH---cCCCEEEECchHHhCHHHHHHHH
Confidence 3447899999987766 59999999986444333334444
No 240
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=39.72 E-value=1.1e+02 Score=29.11 Aligned_cols=113 Identities=21% Similarity=0.154 Sum_probs=64.5
Q ss_pred hHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 018935 61 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (348)
Q Consensus 61 ~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (348)
.+..+|.+.|+.++=... +|...+++.-++-+|..+ +. ..+..+ +| ..-+-++.+++.. ..++.+-++
T Consensus 3 ~mA~Aa~~gGA~giR~~~~~dI~aik~~v~lPIIGi~--K~--~y~~~~----V~-ITPT~~ev~~l~~--aGadIIAlD 71 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANGVEDIRAIKKAVDLPIIGII--KR--DYPDSD----VY-ITPTLKEVDALAE--AGADIIALD 71 (192)
T ss_dssp HHHHHHHHCT-SEEEEESHHHHHHHHTTB-S-EEEE---B---SBTTSS-------BS-SHHHHHHHHH--CT-SEEEEE
T ss_pred HHHHHHHHCCceEEEcCCHHHHHHHHHhcCCCEEEEE--ec--cCCCCC----eE-ECCCHHHHHHHHH--cCCCEEEEe
Confidence 356789999999988764 334444444444333321 11 111111 22 1225565555554 368888887
Q ss_pred CCC-CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 018935 140 LPD-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (348)
Q Consensus 140 ~~D-W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (348)
.++ ..--+|+.++.+++....-+.|-+.+.|||+.+ .+.|+|=|=
T Consensus 72 aT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A---~~~G~D~I~ 117 (192)
T PF04131_consen 72 ATDRPRPETLEELIREIKEKYQLVMADISTLEEAINA---AELGFDIIG 117 (192)
T ss_dssp -SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHH---HHTT-SEEE
T ss_pred cCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHH---HHcCCCEEE
Confidence 762 122889999999988887899999999998765 578998654
No 241
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=39.72 E-value=1.3e+02 Score=28.01 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=64.0
Q ss_pred EEEEE--eCchhHHHHHHHhCCcEEEEcCc---chhh----hhhccceeeeeeeeecCC-ccccCCCCeeEEEEEecChh
Q 018935 52 RVWIW--TESKQVMTAAVERGWNTFVFLSE---NQQL----AIDWSTIALLDPLFIKEG-EVYDSGDRRVGSIIEVSTPQ 121 (348)
Q Consensus 52 ~vWiw--~~~K~~vT~ALEsG~~~~v~~~~---~~e~----~~~l~~i~~i~~l~~~~g-~~~~~~gk~v~~~~~v~~~e 121 (348)
.+|+= -++.+-+...++.|++.+++... +.+. ++..++=..+--|-..+| ..+...++... -.+++
T Consensus 75 ~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~----~~~~~ 150 (229)
T PF00977_consen 75 PIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESS----GIDLE 150 (229)
T ss_dssp EEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEE----EEEHH
T ss_pred cEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccC----CcCHH
Confidence 35552 25899999999999999998753 2233 333333222322344555 43333333210 12333
Q ss_pred hhhhhccccCCCCeEEEeCCCC----eeeehhh---hhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 122 ELQQLQPADGQAENIVIDLPDW----QVIPAEN---IVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 122 d~e~~~~~~~~~~~vvv~~~DW----~iIPlEN---liA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
+.-......+ ...+|+..-|. +=+.+|. +.+.. +..+++ -+++.+|-+.+. +.|+||+++-.
T Consensus 151 ~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~---~~G~~gvivg~ 221 (229)
T PF00977_consen 151 EFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELK---KAGIDGVIVGS 221 (229)
T ss_dssp HHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHH---HTTECEEEESH
T ss_pred HHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHH---HCCCcEEEEeh
Confidence 3333233333 44455533221 1133333 33332 445665 478999988777 99999999753
No 242
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=39.53 E-value=34 Score=32.01 Aligned_cols=29 Identities=7% Similarity=-0.033 Sum_probs=24.6
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 018935 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (348)
Q Consensus 49 ~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~ 77 (348)
..+.|++|| .+++.|...++.|+|+|+.+
T Consensus 222 ~g~~v~~WTVn~~~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 222 ANISVNLYVVNEPWLYSLLWCSGVQSVTTN 251 (252)
T ss_pred CCCEEEEEccCCHHHHHHHHHcCCCEEecC
Confidence 567799999 56899999999999998853
No 243
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=39.49 E-value=70 Score=27.94 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=23.2
Q ss_pred EcCCHHHHHHHH-HHhhcccCeEEEecCCH
Q 018935 165 ISKTPSEAQIFL-EALEQGLGGIVLKVEDV 193 (348)
Q Consensus 165 ~v~~~~eA~~al-~~LE~G~DGVvl~~~d~ 193 (348)
.+.|.++++.++ .+++.|-+|+|++..|.
T Consensus 130 ~~~~~~~i~~~~~~~~~~g~EGlv~K~~ds 159 (174)
T cd07896 130 PVKSNEALDQYLDEVVAAGGEGLMLRRPDA 159 (174)
T ss_pred eeCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 356888888777 78899999999997653
No 244
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=39.31 E-value=1.5e+02 Score=26.53 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=39.2
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..|.++++..-+..=-+ .++..++. ....++..... .+......+++.|++|.+.+|.+++++.+.
T Consensus 49 ~~DlvilD~~~p~~~G~-eli~~l~~~~~~~~vI~ls~~-~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~ 116 (239)
T PRK10430 49 PIDLILLDIYMQQENGL-DLLPVLHEAGCKSDVIVISSA-ADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 (239)
T ss_pred CCCEEEEecCCCCCCcH-HHHHHHHhhCCCCCEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 45777775432221112 23333332 23455555443 334456789999999999999998877553
No 245
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=39.20 E-value=42 Score=31.48 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=30.2
Q ss_pred cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 287 PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 287 pgg-kT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|+| -|+||.+|+.||+|.+-...|+... +-..+|++||=
T Consensus 118 ~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l------~~~~~~~vlIA 157 (283)
T cd06188 118 PPGIGSSYIFNLKPGDKVTASGPFGEFFI------KDTDREMVFIG 157 (283)
T ss_pred CCceehhHHhcCCCCCEEEEECccccccc------cCCCCcEEEEE
Confidence 444 4789999999999999999997632 12468999884
No 246
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=39.08 E-value=72 Score=28.41 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=20.3
Q ss_pred cEEEEEeC-chhHHHHHHHhCCcEEEEcCc
Q 018935 51 KRVWIWTE-SKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 51 K~vWiw~~-~K~~vT~ALEsG~~~~v~~~~ 79 (348)
..+.+-.. ..+.+..+.+.|+|++.+..+
T Consensus 64 ~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 64 LDVHLMVENPDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred EEEEeeeCCHHHHHHHHHHcCCCEEEEeec
Confidence 34655553 345678888999999888764
No 247
>COG0684 MenG Demethylmenaquinone methyltransferase [Coenzyme metabolism]
Probab=39.00 E-value=22 Score=33.77 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=24.2
Q ss_pred eeeeccCCCeEEEEcCCCCeeEEeeee
Q 018935 293 YLSELKSGKEVIVVDQKGRQRTAVVGR 319 (348)
Q Consensus 293 YLSEL~aG~eVLvVd~~G~tR~~~VGR 319 (348)
+|++-..|| ||++|..|..+.+.+|-
T Consensus 64 al~~~~~Gd-VLVid~~g~~~~A~~Gd 89 (210)
T COG0684 64 ALEQAGPGD-VLVIDGGGDLRRALWGD 89 (210)
T ss_pred eeecCCCCC-EEEEeCCCCcceeehHH
Confidence 899999999 99999999999999884
No 248
>CHL00148 orf27 Ycf27; Reviewed
Probab=38.90 E-value=1e+02 Score=26.45 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=38.2
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-+..-.+ .++..++. ....++..... .+......+++.|+++++.+|-++.++.+.
T Consensus 50 ~~d~illd~~~~~~~g~-~~~~~l~~~~~~~ii~ls~~-~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~ 116 (240)
T CHL00148 50 QPDLVILDVMMPKLDGY-GVCQEIRKESDVPIIMLTAL-GDVSDRITGLELGADDYVVKPFSPKELEAR 116 (240)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCcEEEEECC-CCHHhHHHHHHCCCCEEEeCCCCHHHHHHH
Confidence 45667774432222111 22222221 23455554433 444556788999999999999999877553
No 249
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=38.89 E-value=28 Score=34.35 Aligned_cols=39 Identities=31% Similarity=0.296 Sum_probs=26.9
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 148 lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
|+.|++++ +-..-+=|...++++| ..++|.|+|+|++.+
T Consensus 174 l~iiie~a-~VPviVDAGiG~pSdA---a~aMElG~DaVL~NT 212 (262)
T COG2022 174 LEIIIEEA-DVPVIVDAGIGTPSDA---AQAMELGADAVLLNT 212 (262)
T ss_pred HHHHHHhC-CCCEEEeCCCCChhHH---HHHHhcccceeehhh
Confidence 45667765 2333344566778776 567899999999986
No 250
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=38.71 E-value=96 Score=29.43 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=41.8
Q ss_pred CCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcC--CHHHHHHHH-HHhhcccCeEEE-----ecCCH-HHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVL-----KVEDV-KAVLALK 200 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~--~~~eA~~al-~~LE~G~DGVvl-----~~~d~-~~v~~l~ 200 (348)
.+|++=.. |. -+++.+-...+ .-+...+...+ |.+++..++ .+++.|++|+.. ..+|| ..+++|+
T Consensus 173 GAD~vKt~---~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~ 248 (267)
T PRK07226 173 GADIVKTN---YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAIS 248 (267)
T ss_pred CCCEEeeC---CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHH
Confidence 67888554 33 13343322222 23455566677 888887775 788999999964 44565 4455666
Q ss_pred Hhhc
Q 018935 201 EYFD 204 (348)
Q Consensus 201 ~~~~ 204 (348)
.++.
T Consensus 249 ~~v~ 252 (267)
T PRK07226 249 AVVH 252 (267)
T ss_pred HHHh
Confidence 6654
No 251
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=38.70 E-value=14 Score=35.65 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.8
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc
Q 018935 58 ESKQVMTAAVERGWNTFVFLSEN 80 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~ 80 (348)
+..+++..|-+.|+..+++...+
T Consensus 18 d~~~vi~~a~~~gv~~~~~~g~~ 40 (256)
T COG0084 18 DRDEVIARAREAGVKKMVVVGTD 40 (256)
T ss_pred CHHHHHHHHHHcCCcEEEEeecC
Confidence 45778999999999998887654
No 252
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=38.49 E-value=10 Score=37.19 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=12.0
Q ss_pred eEEEeecCCCCCCc
Q 018935 231 RVCVDLCSLMRPGE 244 (348)
Q Consensus 231 RVCVDtcsll~~GE 244 (348)
+||+|||..|..|=
T Consensus 175 gVClDTCH~FaaGy 188 (281)
T KOG3997|consen 175 GVCLDTCHTFAAGY 188 (281)
T ss_pred eeeHhhhhhhcccc
Confidence 59999999998764
No 253
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=38.31 E-value=1e+02 Score=26.11 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=38.8
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-+..-.+ .++..++. ....++... +..+......+++.|+|+.+.+|-++.++...
T Consensus 44 ~~dlvi~d~~~~~~~g~-~~~~~l~~~~~~~ii~ls-~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~ 110 (223)
T PRK11517 44 DYALIILDIMLPGMDGW-QILQTLRTAKQTPVICLT-ARDSVDDRVRGLDSGANDYLVKPFSFSELLAR 110 (223)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHH
Confidence 45777775432221111 12222221 134455544 34455667899999999999999998877553
No 254
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=38.22 E-value=1.7e+02 Score=30.33 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=67.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv 138 (348)
..+.+.+-+|.|++.++++..|......+..+..+.. . . .+..+ ....|.+.|+...+... .++.+.+
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~---~----~--p~~~v-i~g~v~t~e~a~~l~~a--Gad~i~v 296 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA---K----Y--PDVQI-IAGNVATAEAARALIEA--GADAVKV 296 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh---h----C--CCCCE-EEeccCCHHHHHHHHHc--CCCEEEE
Confidence 4688888999999988877543222222222222211 0 0 01222 22567888876665542 5566655
Q ss_pred e-----------CCCCeeeehhhh---hhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 139 D-----------LPDWQVIPAENI---VASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 139 ~-----------~~DW~iIPlENl---iA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
- ..+|-+=.++-| ..+++..+..||+ .+++..|+..+ |..|+|.|++-+-
T Consensus 297 g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kA---la~GA~~v~~G~~ 362 (486)
T PRK05567 297 GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKA---LAAGASAVMLGSM 362 (486)
T ss_pred CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHH---HHhCCCEEEECcc
Confidence 1 135543333333 3333344668999 89999987665 5579999997653
No 255
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=38.16 E-value=31 Score=31.72 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=25.4
Q ss_pred ceeEEEecCCceeeeee--ccCCCeEEEEc---CCCCe
Q 018935 280 VHAYVLVPGGKTCYLSE--LKSGKEVIVVD---QKGRQ 312 (348)
Q Consensus 280 VHaYv~~pggkT~YLSE--L~aG~eVLvVd---~~G~t 312 (348)
.|+|.. .++.+-|++. +..|++||+|| +.|.|
T Consensus 96 ~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT 132 (191)
T TIGR01744 96 VHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQA 132 (191)
T ss_pred EEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChH
Confidence 478877 5667888886 78999999999 66655
No 256
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.12 E-value=2e+02 Score=26.97 Aligned_cols=124 Identities=23% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 018935 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~ 139 (348)
.+++.+..+.|++.+=++-...+-.+.+..+..--| +..+++= .|.++++.+.+... .+++++.-
T Consensus 30 ~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p------------~~~IGAG-TVl~~~~a~~a~~a--GA~FivsP 94 (212)
T PRK05718 30 VPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVP------------EALIGAG-TVLNPEQLAQAIEA--GAQFIVSP 94 (212)
T ss_pred HHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCC------------CCEEEEe-eccCHHHHHHHHHc--CCCEEECC
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhhcccc
Q 018935 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYFDGRN 207 (348)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d----~~~v~~l~~~~~~~~ 207 (348)
..+ +.++...+..+--++-.+.|+.| +..+++.|+|-|-+-|.+ ++-++.|+..+...+
T Consensus 95 ~~~------~~vi~~a~~~~i~~iPG~~TptE---i~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~~ 157 (212)
T PRK05718 95 GLT------PPLLKAAQEGPIPLIPGVSTPSE---LMLGMELGLRTFKFFPAEASGGVKMLKALAGPFPDVR 157 (212)
T ss_pred CCC------HHHHHHHHHcCCCEeCCCCCHHH---HHHHHHCCCCEEEEccchhccCHHHHHHHhccCCCCe
No 257
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=38.02 E-value=1.3e+02 Score=29.74 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=55.8
Q ss_pred CchhHHHHHHHhCCcEEEEcCcch-hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC-CCCe
Q 018935 58 ESKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG-QAEN 135 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~~-e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~-~~~~ 135 (348)
.+.+++.+.-+.|.=+++...... ++.+.+.++.. ...++..+.. ++++.+.+..... ..+.
T Consensus 46 t~~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk~---------------~l~v~~~~~~-~~~~~~~~~~l~eagv~~ 109 (325)
T cd00381 46 TESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVKG---------------RLLVGAAVGT-REDDKERAEALVEAGVDV 109 (325)
T ss_pred CcHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhcc---------------CceEEEecCC-ChhHHHHHHHHHhcCCCE
Confidence 456666666677776777654222 22333322210 0111222222 3455455444443 5788
Q ss_pred EEEeCCC-CeeeehhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 018935 136 IVIDLPD-WQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 136 vvv~~~D-W~iIPlENliA~~q~~~--~~l~a-~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
+++++.. .. -.+.++|.++.... ..|++ .+.+.++|+ .+++.|+|+|++
T Consensus 110 I~vd~~~G~~-~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~---~l~~aGaD~I~v 162 (325)
T cd00381 110 IVIDSAHGHS-VYVIEMIKFIKKKYPNVDVIAGNVVTAEAAR---DLIDAGADGVKV 162 (325)
T ss_pred EEEECCCCCc-HHHHHHHHHHHHHCCCceEEECCCCCHHHHH---HHHhcCCCEEEE
Confidence 8886642 22 12344555544332 34553 556666655 456789999997
No 258
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=37.56 E-value=3.1e+02 Score=27.81 Aligned_cols=105 Identities=17% Similarity=0.145 Sum_probs=55.8
Q ss_pred EEEEEEEE-------EcCCcceEEEeec-C-CCCC---CceEEEeccCc---------eE--EEEeec-----cccCCCC
Q 018935 217 KATVTRVD-------VAGMGDRVCVDLC-S-LMRP---GEGLLVGSFAR---------GL--FLVHSE-----CLESNYI 268 (348)
Q Consensus 217 ~atVt~V~-------~vGmGdRVCVDtc-s-ll~~---GEGmLVGS~S~---------gl--FLVhsE-----t~es~Yv 268 (348)
.++|.+|+ .+--||||+|-+- . -+.+ --|+.++.... +- .|-|.| -.+.|-.
T Consensus 271 ~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~ 350 (411)
T PRK04000 271 TTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIK 350 (411)
T ss_pred eEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCC
Confidence 46777776 4568999998653 0 1111 12555553211 11 111211 1134566
Q ss_pred CCCCeeeecCCceeEEEe--cCCceeee-----eeccCCCeEEEEcCCC-CeeEEeeeeEE
Q 018935 269 ASRPFRVNAGPVHAYVLV--PGGKTCYL-----SELKSGKEVIVVDQKG-RQRTAVVGRVK 321 (348)
Q Consensus 269 a~RPFRVNAGaVHaYv~~--pggkT~YL-----SEL~aG~eVLvVd~~G-~tR~~~VGRvK 321 (348)
+.+++.++.|..|.-..+ .++...-| .-++.||++++....| +.|.+-+|-+|
T Consensus 351 ~g~~~~l~~~t~~~~~~i~~i~~~~~~~~l~~p~~~~~g~r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 351 TGEPLMLNVGTATTVGVVTSARKDEAEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred CCCEEEEEEeccEEEEEEEEcCCcEEEEEECCcEecCCCCEEEEEEecCCcEEEEEEEEeC
Confidence 677777888877654433 33321111 1256899998877544 46777666543
No 259
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=37.43 E-value=42 Score=33.57 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=30.1
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 288 ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|.-|.||.+|+.||+|.+-...|+.-.. . ..+|++||=
T Consensus 244 G~~S~~L~~l~~Gd~v~v~gP~G~f~~~-----~-~~~~ivlIA 281 (409)
T PRK05464 244 GIMSSYIFSLKPGDKVTISGPFGEFFAK-----D-TDAEMVFIG 281 (409)
T ss_pred CchhhHHHhCCCCCEEEEEccccCcEec-----C-CCceEEEEE
Confidence 4458899999999999999999987421 2 468998874
No 260
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=37.39 E-value=1.1e+02 Score=27.96 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=38.9
Q ss_pred cChhhhhhhcccc--CCCCeEEEeCC-CCeeeehhhhhhcccCCCceEEEEc----CCHHHH-HHHHHHhhcccCeEEE-
Q 018935 118 STPQELQQLQPAD--GQAENIVIDLP-DWQVIPAENIVASFQGSGKTVFAIS----KTPSEA-QIFLEALEQGLGGIVL- 188 (348)
Q Consensus 118 ~~~ed~e~~~~~~--~~~~~vvv~~~-DW~iIPlENliA~~q~~~~~l~a~v----~~~~eA-~~al~~LE~G~DGVvl- 188 (348)
.+++++++++... ..+|++-+.+. |.+. ++.+++.. +..+++.- .|.+++ +.+-++++.|++||.+
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~--~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGDAES--FKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCCHHH--HHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 3456666533222 26788887532 1111 34444432 33355533 344443 3456788999999986
Q ss_pred ----ecCCHHH
Q 018935 189 ----KVEDVKA 195 (348)
Q Consensus 189 ----~~~d~~~ 195 (348)
..+||.+
T Consensus 215 ~~i~~~~dp~~ 225 (235)
T cd00958 215 RNIFQRPDPVA 225 (235)
T ss_pred hhhhcCCCHHH
Confidence 4455543
No 261
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.27 E-value=1.3e+02 Score=27.10 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=37.3
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
..+.+++... +.++++.++...+-.++..+.+.++++. +.+.|+|++++.+
T Consensus 80 g~d~v~l~~~-----~~~~~~~~~~~~~i~~i~~v~~~~~~~~---~~~~gad~i~~~~ 130 (236)
T cd04730 80 GVPVVSFSFG-----PPAEVVERLKAAGIKVIPTVTSVEEARK---AEAAGADALVAQG 130 (236)
T ss_pred CCCEEEEcCC-----CCHHHHHHHHHcCCEEEEeCCCHHHHHH---HHHcCCCEEEEeC
Confidence 5678887544 4466777766666788888888888765 4568999999854
No 262
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=37.26 E-value=88 Score=30.72 Aligned_cols=136 Identities=14% Similarity=0.217 Sum_probs=76.6
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccCCCCeeEEEEEecChhh
Q 018935 53 VWIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (348)
Q Consensus 53 vWiw~--~~K~~vT~ALEsG~~~~v~~~~~------~e~~~~l~~i~~i~--~l~~~~g~~~~~~gk~v~~~~~v~~~ed 122 (348)
|.+-- -+-+.+..|++.|++.|+++.-+ .+..+++..++.-. ++-.+=|.+...++..++.- ..+++|+
T Consensus 80 V~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s-~~t~pee 158 (293)
T PRK07315 80 VAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG-ELAPIED 158 (293)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc-CCCCHHH
Confidence 55532 25679999999999999998533 34444444433311 12223333333222222211 1389999
Q ss_pred hhhhccccCCCCeEEEe-------CCC-CeeeehhhhhhcccC-C-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 018935 123 LQQLQPADGQAENIVID-------LPD-WQVIPAENIVASFQG-S-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (348)
Q Consensus 123 ~e~~~~~~~~~~~vvv~-------~~D-W~iIPlENliA~~q~-~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (348)
..++. . ...|++-+. +.. .+.|-+|-| .+++. . +.-|++.=.|--.-+-+-.+.+.|+++|=+.++=
T Consensus 159 a~~f~-~-tgvD~LAv~iG~vHG~y~t~~k~l~~e~L-~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i 235 (293)
T PRK07315 159 AKAMV-E-TGIDFLAAGIGNIHGPYPENWEGLDLDHL-EKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTEC 235 (293)
T ss_pred HHHHH-H-cCCCEEeeccccccccCCCCCCcCCHHHH-HHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHH
Confidence 87777 3 368998886 333 234666643 22222 1 2345555553222234566789999999998873
No 263
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=37.18 E-value=2.7e+02 Score=25.78 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 018935 58 ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~--~~v~~~~~-----~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~ 130 (348)
.+.+-+..|.+.|+| +|||.+.. .+.++++.+. +++.-+.|+++ .-.+++++.++....
T Consensus 11 ~~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~-------------~~~~i~~VgVf-~~~~~~~i~~~~~~~ 76 (210)
T PRK01222 11 TTPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAA-------------LPPFVKVVGVF-VNASDEEIDEIVETV 76 (210)
T ss_pred CcHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHh-------------CCCCCCEEEEE-eCCCHHHHHHHHHhc
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHH-HHHHhhcccCeEEEecCCH
Q 018935 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI-FLEALEQGLGGIVLKVEDV 193 (348)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~-al~~LE~G~DGVvl~~~d~ 193 (348)
.-+++-+++ -.|.+.+-+--+..+-+|+-.++=.+...+ .+.-.+..+|.+|+++.++
T Consensus 77 -~~d~vQLHg----~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~ 135 (210)
T PRK01222 77 -PLDLLQLHG----DETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVG 135 (210)
T ss_pred -CCCEEEECC----CCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCC
No 264
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=37.05 E-value=25 Score=38.19 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=31.7
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeecccee
Q 018935 282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 328 (348)
Q Consensus 282 aYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLl 328 (348)
+-|..|| =...=.++++||+|+||+.+| +..-|||+++-.+-|.
T Consensus 580 ~~v~apg-Vv~~d~~ir~gDeV~Vv~e~~--~~lavG~A~~~~~em~ 623 (639)
T PRK13534 580 KSVFAKF-VIDCDEEIRPYDEVLVVNEDD--ELLAYGKALLNGRELM 623 (639)
T ss_pred CcccCCc-ceecCCCCCCCCEEEEEecCC--cEEEEEEEecCHHHHh
Confidence 3444443 233336899999999999887 5799999998666553
No 265
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=36.73 E-value=36 Score=31.98 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=62.9
Q ss_pred EEEEEEEEEcCCcc-eEEEeecCC---CCCCceEEEeccCceEEEEeeccccCCC-CCCCCeeeecCCceeEEEecCCce
Q 018935 217 KATVTRVDVAGMGD-RVCVDLCSL---MRPGEGLLVGSFARGLFLVHSECLESNY-IASRPFRVNAGPVHAYVLVPGGKT 291 (348)
Q Consensus 217 ~atVt~V~~vGmGd-RVCVDtcsl---l~~GEGmLVGS~S~glFLVhsEt~es~Y-va~RPFRVNAGaVHaYv~~pggkT 291 (348)
..+|++++.+--.. +..++.=.. +.||+ ++.|.-.+-.+.|| +++-|.+-+-.-.|=-+..-|-.|
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQ---------fv~l~~~~~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T 79 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQ---------FVMLRVPGGVRRPYSLASAPDDKGELELHIRVYEVGKVT 79 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCc---------EEEEEeCCCcEEEeeeccCCCcCCcEEEEEEEEeCChHH
Confidence 47777777774332 344444443 67776 44444444445555 445554422225676666677789
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEE
Q 018935 292 CYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILV 330 (348)
Q Consensus 292 ~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLI 330 (348)
+|+++|+.||.|-+...-|+.-... + -.+|+++|
T Consensus 80 ~~i~~~k~gd~i~v~GP~G~~~~~~----~-~~~~vlli 113 (252)
T COG0543 80 KYIFGLKEGDKIRVRGPLGNGFLRE----K-IGKPVLLI 113 (252)
T ss_pred HHHhhccCCCEEEEEcCCCCCcccc----c-cCCcEEEE
Confidence 9999999999999999999875542 1 23446665
No 266
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=36.70 E-value=3.6e+02 Score=26.29 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=66.1
Q ss_pred chhHHHHHHHhCCcEEEEcCc--chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 59 SKQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~--~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
++..+-.|...|+|++++--. +.+..+++-+.+ ..-|- -++++|.+.+|++.+... .++.+
T Consensus 113 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a-------------~~lGl--e~LVEVh~~~El~~a~~~--ga~ii 175 (247)
T PRK13957 113 DEIQIREARAFGASAILLIVRILTPSQIKSFLKHA-------------SSLGM--DVLVEVHTEDEAKLALDC--GAEII 175 (247)
T ss_pred CHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHH-------------HHcCC--ceEEEECCHHHHHHHHhC--CCCEE
Confidence 455566666799999876531 011111111110 11132 278899999998886653 56677
Q ss_pred EEeCCCCe--eeeh---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEE-----ecCCHHH
Q 018935 137 VIDLPDWQ--VIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVL-----KVEDVKA 195 (348)
Q Consensus 137 vv~~~DW~--iIPl---ENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl-----~~~d~~~ 195 (348)
-|+-+|-+ .+.+ ++|...+.. +.-+++ ..++.+|++.+.. ++||||+ +.+||.+
T Consensus 176 GINnRdL~t~~vd~~~~~~L~~~ip~-~~~~IsESGI~t~~d~~~l~~----~~davLvG~~lm~~~d~~~ 241 (247)
T PRK13957 176 GINTRDLDTFQIHQNLVEEVAAFLPP-NIVKVGESGIESRSDLDKFRK----LVDAALIGTYFMEKKDIRK 241 (247)
T ss_pred EEeCCCCccceECHHHHHHHHhhCCC-CcEEEEcCCCCCHHHHHHHHH----hCCEEEECHHHhCCCCHHH
Confidence 78877654 3333 445554432 222333 4578899888643 3999987 4455543
No 267
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=36.24 E-value=23 Score=36.10 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 018935 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (348)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~ 202 (348)
.+.-+++-.+||.|+|+|++.++|.+.+++|.++
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i 46 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDEEDVERVRELGRI 46 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe
Confidence 3455677889999999999999988888877654
No 268
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=36.23 E-value=45 Score=28.34 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=25.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEEc
Q 018935 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (348)
Q Consensus 48 ~~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~ 77 (348)
+..+.+++|+ .+++.+..++..|+|+++.+
T Consensus 158 ~~g~~v~~wtvn~~~~~~~~~~~GVdgI~TD 188 (189)
T cd08556 158 AAGLKVYVWTVNDPEDARRLLALGVDGIITD 188 (189)
T ss_pred HcCCEEEEEcCCCHHHHHHHHHCCCCEEecC
Confidence 4677899999 57999999999999998853
No 269
>PRK13795 hypothetical protein; Provisional
Probab=36.12 E-value=40 Score=36.31 Aligned_cols=53 Identities=26% Similarity=0.431 Sum_probs=38.8
Q ss_pred eeeecCCce----eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccce
Q 018935 273 FRVNAGPVH----AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (348)
Q Consensus 273 FRVNAGaVH----aYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPL 327 (348)
--|+.|+++ ..-.++-|=+..=.+++.||.|+|++.+|+ .+-||++++-..-|
T Consensus 129 VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~~gd~V~I~~e~g~--~vavG~a~~s~~e~ 185 (636)
T PRK13795 129 VIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVVTEDGE--VVGVGRAKMDGDDM 185 (636)
T ss_pred EEEcccHHHHHHcCCcccCCceEEEeCCCCCCCEEEEEeCCCC--EEEEEEeccCHHHH
Confidence 457888875 333444556666678999999999999886 48899998855544
No 270
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=36.09 E-value=50 Score=31.71 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=26.5
Q ss_pred CcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 018935 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 50 ~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
..+|++|| .+++.|..-++-|+|+||.+..
T Consensus 230 gl~V~~WTVN~~~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 230 KVKIVLFGINTADDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred CcEEEEEEeCCHHHHHHHHHcCCCEEEeCCc
Confidence 67899999 6889999999999999998754
No 271
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=35.67 E-value=1.5e+02 Score=24.84 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=39.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-... .--+++..+.. ....++... +..+......+++.|+++++.+|-+..++.+.
T Consensus 42 ~~dlvl~d~~~~~~-~g~~~~~~l~~~~~~~~iivls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 109 (218)
T TIGR01387 42 DYDLIILDVMLPGM-DGWQILQTLRRSGKQTPVLFLT-ARDSVADKVKGLDLGADDYLVKPFSFSELLAR 109 (218)
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHccCCCCcEEEEE-cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHH
Confidence 45677774332221 11133333332 234455544 44556667888999999999999998876543
No 272
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=35.49 E-value=74 Score=31.23 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=34.2
Q ss_pred ceEEEEcCCHHH-HHHHHHHhhc---ccCeEEEecC------CHHHHHHHHHhhcc
Q 018935 160 KTVFAISKTPSE-AQIFLEALEQ---GLGGIVLKVE------DVKAVLALKEYFDG 205 (348)
Q Consensus 160 ~~l~a~v~~~~e-A~~al~~LE~---G~DGVvl~~~------d~~~v~~l~~~~~~ 205 (348)
.++..++.+.++ +.-++++++. |+|+|+|+.- .+++++++++.++.
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~ 240 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDI 240 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 479999999983 5555555555 5999999984 46777888887753
No 273
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=35.44 E-value=29 Score=31.15 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcccCeEEEecCCHH-------------HHHHHHHhhcccccccceee
Q 018935 170 SEAQIFLEALEQGLGGIVLKVEDVK-------------AVLALKEYFDGRNEVSNLLS 214 (348)
Q Consensus 170 ~eA~~al~~LE~G~DGVvl~~~d~~-------------~v~~l~~~~~~~~~~~~~l~ 214 (348)
-++.-+|.+|.+|+|||++.-=-.+ -+.-|+++++++..+.++++
T Consensus 41 vn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~ 98 (132)
T COG1908 41 VNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVR 98 (132)
T ss_pred cCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEE
Confidence 4788999999999999998643222 23445666665444444443
No 274
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=35.34 E-value=1.5e+02 Score=28.17 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=67.0
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEEcC----cc--------hhhhhhccce-eeeeeeeecCCccccCCCCeeEEEEEec-
Q 018935 53 VWIWTESKQVMTAAVERGWNTFVFLS----EN--------QQLAIDWSTI-ALLDPLFIKEGEVYDSGDRRVGSIIEVS- 118 (348)
Q Consensus 53 vWiw~~~K~~vT~ALEsG~~~~v~~~----~~--------~e~~~~l~~i-~~i~~l~~~~g~~~~~~gk~v~~~~~v~- 118 (348)
+++.-.+.+.+ --|+|+++|+. .| .+-+..++++ .+.. .+..|.++=..|..++.+....
T Consensus 57 vilfp~~~~~i----~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e--~i~~gYiv~~~~~~v~~v~~a~~ 130 (219)
T cd02812 57 VILFPSNPEAV----SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLE--LIPEGYLVLNPDSTVARVTGAKT 130 (219)
T ss_pred EEEeCCCcccc----CcCCCEEEEEeeecCCCchHHHHHHHHHHHHhcccccccc--ccceEEEEECCCCceeeeeccCc
Confidence 56555555555 36799999985 22 2333334431 1111 1223444433445566555444
Q ss_pred --Chhhhhhhcc---ccCCCCeEEEeCCCCeeeehhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 119 --TPQELQQLQP---ADGQAENIVIDLPDWQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 119 --~~ed~e~~~~---~~~~~~~vvv~~~DW~iIPlENliA~~q---~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
++|+....+. .++ ...+-++..+=. +|.|.+-+-.+ +..--+=..++|.++|+.+ ++.|+|+|++-+
T Consensus 131 ~~~~e~~~ayA~aae~~g-~~ivyLe~SG~~-~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l---~~aGAD~VVVGs 205 (219)
T cd02812 131 DLKPEDAAAYALAAEYLG-MPIVYLEYSGAY-GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEM---AEAGADTIVVGN 205 (219)
T ss_pred CCCHHHHHHHHHHHHHcC-CeEEEeCCCCCc-CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHH---HHcCCCEEEECc
Confidence 3444433222 233 566666643322 66554432222 2222344467888888875 578999999987
Q ss_pred C
Q 018935 191 E 191 (348)
Q Consensus 191 ~ 191 (348)
-
T Consensus 206 a 206 (219)
T cd02812 206 I 206 (219)
T ss_pred h
Confidence 4
No 275
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=35.29 E-value=1.3e+02 Score=25.45 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=38.0
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-...-. -+++..++. ....++.... ..+......+++.|++|++.+|-++.++.+.
T Consensus 47 ~~dlvl~d~~~~~~~g-~~~~~~l~~~~~~~~ii~ls~-~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~ 114 (228)
T PRK11083 47 PPDLVILDVGLPDISG-FELCRQLLAFHPALPVIFLTA-RSDEVDRLVGLEIGADDYVAKPFSPREVAAR 114 (228)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhhCCCCCEEEEEc-CCcHHHHHHHhhcCCCeEEECCCCHHHHHHH
Confidence 3566666433222211 233333332 2345555443 3344556788999999999999998877553
No 276
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=35.15 E-value=86 Score=31.28 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=40.2
Q ss_pred hhhhhhcccCCC---ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 148 AENIVASFQGSG---KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 148 lENliA~~q~~~---~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
+++.|.++.... .+|=.+|.|++|++ ++|+.|+|=|+|+.=+|+++++..+.+
T Consensus 174 i~~Av~~aR~~~~~~~kIEVEvesle~~~---eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 174 ITEAVRRARAAAPFTKKIEVEVESLEEAE---EALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHH---HHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 444444433222 46889999999987 557889999999999999998877764
No 277
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=35.14 E-value=38 Score=32.74 Aligned_cols=44 Identities=20% Similarity=0.415 Sum_probs=29.1
Q ss_pred ecCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEE
Q 018935 286 VPGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (348)
Q Consensus 286 ~pggk-T~YL-SEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeA 332 (348)
.|+|+ ++|| ..|+.||+|.+-...|+-..-. -.-..+|++||=+
T Consensus 72 ~~~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~---~~~~~~~~lliag 117 (352)
T TIGR02160 72 IPGGLFSTWANDEIRPGDTLEVMAPQGLFTPDL---STPHAGHYVAVAA 117 (352)
T ss_pred eCCCcchHHHHhcCCCCCEEEEeCCceeeecCC---CccccccEEEEec
Confidence 36554 7899 5899999999988888642210 0012478888743
No 278
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.01 E-value=1.1e+02 Score=30.03 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
..|-.+++|.+||+.+ ++.|+|-|.+++-.+++++++.+.+
T Consensus 189 ~~Igvsv~tleea~~A---~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 189 VKIEVETETEEQVREA---VAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred CEEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhc
Confidence 4688999999998876 4799999999888888888777654
No 279
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.92 E-value=3.5e+02 Score=25.51 Aligned_cols=125 Identities=9% Similarity=-0.097 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc-------hhhhhhccceeeeeeeee-cCCccccCCCCeeEEEEEecChhhhhhhccc
Q 018935 58 ESKQVMTAAVERGWNTFVFLSEN-------QQLAIDWSTIALLDPLFI-KEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~-------~e~~~~l~~i~~i~~l~~-~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (348)
++.+-+..+++.|++.+++.... .+.++.+++=..+--|-. .++.+......... .++.++-.....
T Consensus 83 rs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~-----~~~~e~~~~l~~ 157 (232)
T PRK13586 83 RDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKS-----MEVIDGIKKVNE 157 (232)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCC-----CCHHHHHHHHHh
Q ss_pred cCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 018935 130 DGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 130 ~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
.+..+.++.+-. +=.-=|=.+++..+......+++ +.-....+-.....+.|+||+++
T Consensus 158 ~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~~~~via-sGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 158 LELLGIIFTYISNEGTTKGIDYNVKDYARLIRGLKEY-AGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred cCCCEEEEecccccccCcCcCHHHHHHHHhCCCCEEE-ECCCCCHHHHHHHHHCCCCEEEE
No 280
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=34.89 E-value=1.1e+02 Score=27.47 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=46.7
Q ss_pred EEEEecChhhhhhhcccc--CCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhcccCeEE
Q 018935 113 SIIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGLGGIV 187 (348)
Q Consensus 113 ~~~~v~~~ed~e~~~~~~--~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a---~v~~~~eA~~al~~LE~G~DGVv 187 (348)
.++...++++....+..+ +..+.+-+..++..-+| .+..+...-..+.. .+-+.++++ .+++.|+|+|+
T Consensus 8 ~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~---~i~~l~~~~~~~~iGag~v~~~~~~~---~a~~~Ga~~i~ 81 (190)
T cd00452 8 AVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALE---AIRALRKEFPEALIGAGTVLTPEQAD---AAIAAGAQFIV 81 (190)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHH---HHHHHHHHCCCCEEEEEeCCCHHHHH---HHHHcCCCEEE
Confidence 344556677665554433 46788888766655333 44444333222332 445555554 45679999999
Q ss_pred EecCCHHHHH
Q 018935 188 LKVEDVKAVL 197 (348)
Q Consensus 188 l~~~d~~~v~ 197 (348)
+...|++-+.
T Consensus 82 ~p~~~~~~~~ 91 (190)
T cd00452 82 SPGLDPEVVK 91 (190)
T ss_pred cCCCCHHHHH
Confidence 8877765443
No 281
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=34.82 E-value=48 Score=29.14 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCcEEEEEe-Cc-hhHHHHHHHhCCcEEEE
Q 018935 49 KPKRVWIWT-ES-KQVMTAAVERGWNTFVF 76 (348)
Q Consensus 49 ~~K~vWiw~-~~-K~~vT~ALEsG~~~~v~ 76 (348)
....+++|+ .+ .+.+...++.|+|+|+.
T Consensus 148 ~g~~v~~wtvn~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 148 LGLLSRIWTVNDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred CCCEEEEEeeCChHHHHHHHHHcCCCEEeC
Confidence 456799999 45 89999999999999885
No 282
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=34.79 E-value=56 Score=35.34 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=40.1
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeE-EEEcCCCCeeEEeeeeEEeeccceeEE
Q 018935 270 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEV-IVVDQKGRQRTAVVGRVKIESRPLILV 330 (348)
Q Consensus 270 ~RPFRVNA-----GaVHaYv~~pggkT~YLSEL~aG~eV-LvVd~~G~tR~~~VGRvKIE~RPLlLI 330 (348)
.|||-+.- |-+-=.+..-|.-|+||.+|+.||.| -+...-|+.-.. . +.+|+++|
T Consensus 44 ~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l~~Gd~v~~v~GP~G~~~~~--~----~~~~~llv 104 (752)
T PRK12778 44 RIPLTIADADPEKGTITLVIQEVGLSTTKLCELNEGDYITDVVGPLGNPSEI--E----NYGTVVCA 104 (752)
T ss_pred eeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcCCCCCEeCeEeCCCCCCccC--C----CCCeEEEE
Confidence 57888752 33444555568899999999999999 699999987432 1 23677776
No 283
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=34.75 E-value=2.7e+02 Score=23.14 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=38.9
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-...- --.++..+.. ...++..... ++......+++.|++|++.+|-++.++.+.
T Consensus 47 ~~dlvi~d~~~~~~~-g~~~~~~l~~-~~~vi~~s~~-~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~ 111 (196)
T PRK10360 47 GVQVCICDISMPDIS-GLELLSQLPK-GMATIMLSVH-DSPALVEQALNAGARGFLSKRCSPDELIAA 111 (196)
T ss_pred CCCEEEEeCCCCCCC-HHHHHHHHcc-CCCEEEEECC-CCHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 457777754322211 1123333332 3455555443 445567788999999999999998876543
No 284
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=34.32 E-value=82 Score=30.27 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=30.9
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 018935 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (348)
Q Consensus 149 ENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~ 198 (348)
+.+++.++..+-.+++ .|++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l---~~~GVdgIi--TD~P~~l~~ 296 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFERA---FELGADGVM--TDYPTKLRE 296 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHHHH---HhcCCCEEE--eCCHHHHHH
Confidence 4667777666555554 47777776654 568999987 777875543
No 285
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=34.31 E-value=92 Score=32.70 Aligned_cols=66 Identities=12% Similarity=0.311 Sum_probs=38.3
Q ss_pred ChhhhhhhccccC-CCCeEEEeCC-CCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 018935 119 TPQELQQLQPADG-QAENIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 119 ~~ed~e~~~~~~~-~~~~vvv~~~-DW~iIPlENliA~~q~~--~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
++++++++..... ..+.++|+.. +.+.-.+| .|.++... +..|++ .+.|.++|+ .+.+.|+|+|.+
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~-~i~~ik~~~~~~~v~aG~V~t~~~a~---~~~~aGad~I~v 309 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQID-MIKKLKSNYPHVDIIAGNVVTADQAK---NLIDAGADGLRI 309 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHH-HHHHHHhhCCCceEEECCcCCHHHHH---HHHHcCCCEEEE
Confidence 4566666655554 6888888763 22222222 34444332 235555 566666666 455789999975
No 286
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=33.86 E-value=92 Score=28.34 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=51.9
Q ss_pred hhhhhhcccCCC--ceEEEEcCC-HHHHHHHHHHhhcccCeEEEecCCH-------------HHHHHHHHhhcccccccc
Q 018935 148 AENIVASFQGSG--KTVFAISKT-PSEAQIFLEALEQGLGGIVLKVEDV-------------KAVLALKEYFDGRNEVSN 211 (348)
Q Consensus 148 lENliA~~q~~~--~~l~a~v~~-~~eA~~al~~LE~G~DGVvl~~~d~-------------~~v~~l~~~~~~~~~~~~ 211 (348)
.++++..+.... .++.+-+.+ .++++.+ .+.|+|.|-+.-.-. ..+..+.+.++..+...-
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a---~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 129 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRNREKGIERA---LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL 129 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccCchhhHHHH---HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344555544443 567677777 5555554 567899887665422 133334444433334444
Q ss_pred eeeeeEEEEEE--------------EEEcCCcceEEE-eecCCCCCCc
Q 018935 212 LLSLMKATVTR--------------VDVAGMGDRVCV-DLCSLMRPGE 244 (348)
Q Consensus 212 ~l~L~~atVt~--------------V~~vGmGdRVCV-Dtcsll~~GE 244 (348)
.+.+....+++ +...| -|++|+ ||...+.|.+
T Consensus 130 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~Dt~G~~~P~~ 176 (265)
T cd03174 130 EVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLKDTVGLATPEE 176 (265)
T ss_pred eEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEechhcCCcCHHH
Confidence 55555555665 33456 456665 8877777654
No 287
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=33.86 E-value=2.4e+02 Score=22.43 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=67.2
Q ss_pred cEEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccc
Q 018935 51 KRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPA 129 (348)
Q Consensus 51 K~vWiw~~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~ 129 (348)
.++++=+.+.+....|.+-|++.++...+ .+..+++.++. + |..+-..++..+ ++.++.....
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-~~~~~~i~~~~-------------~--~~~~d~vid~~g~~~~~~~~~~~ 78 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSD-DDFVEQIRELT-------------G--GRGVDVVIDCVGSGDTLQEAIKL 78 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTT-SSHHHHHHHHT-------------T--TSSEEEEEESSSSHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccc-ccccccccccc-------------c--cccceEEEEecCcHHHHHHHHHH
Confidence 45666666666777788888887775543 22333333331 1 122335556666 7777776666
Q ss_pred cCC-CCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCC-HHHHHHHHHHhh
Q 018935 130 DGQ-AENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKT-PSEAQIFLEALE 180 (348)
Q Consensus 130 ~~~-~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~-~~eA~~al~~LE 180 (348)
++. +..+++-.. ++..+|.-+++.. ..++...... .+|.+.+++-|.
T Consensus 79 l~~~G~~v~vg~~~~~~~~~~~~~~~~~----~~~i~g~~~~~~~~~~~~~~~la 129 (130)
T PF00107_consen 79 LRPGGRIVVVGVYGGDPISFNLMNLMFK----EITIRGSWGGSPEDFQEALQLLA 129 (130)
T ss_dssp EEEEEEEEEESSTSTSEEEEEHHHHHHT----TEEEEEESSGGHHHHHHHHHHHH
T ss_pred hccCCEEEEEEccCCCCCCCCHHHHHhC----CcEEEEEccCCHHHHHHHHHHhc
Confidence 654 445555444 4778888888874 4455555444 488888877654
No 288
>PRK06201 hypothetical protein; Validated
Probab=33.85 E-value=27 Score=32.74 Aligned_cols=42 Identities=36% Similarity=0.461 Sum_probs=29.4
Q ss_pred cCCceeEEEecCCce---eeeeeccCCCeEEEEcCCCCeeEEeeee
Q 018935 277 AGPVHAYVLVPGGKT---CYLSELKSGKEVIVVDQKGRQRTAVVGR 319 (348)
Q Consensus 277 AGaVHaYv~~pggkT---~YLSEL~aG~eVLvVd~~G~tR~~~VGR 319 (348)
+|+.-.--..|++.. .++...++|| |+++|..|..+.+..|-
T Consensus 54 ~G~A~Tv~~~~~d~~~~~~ai~~~~pG~-VlVid~~g~~~~a~~G~ 98 (221)
T PRK06201 54 AGTALTVRTRPGDNLMIHRALDLARPGD-VIVVDGGGDLTNALVGE 98 (221)
T ss_pred EEEEEEEEeeCCCcHHHHHHHhccCCCc-EEEEECCCCCCccchhH
Confidence 455444334454433 4588889999 99999999998888874
No 289
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.35 E-value=54 Score=29.97 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCCcEEEEEeC-chhHHHHHHHhCCcEEEEcC
Q 018935 48 SKPKRVWIWTE-SKQVMTAAVERGWNTFVFLS 78 (348)
Q Consensus 48 ~~~K~vWiw~~-~K~~vT~ALEsG~~~~v~~~ 78 (348)
++.+.+++|+- +.+.+..+++.|+|+|+.+.
T Consensus 229 ~~G~~v~vwtvn~~~~~~~~~~~Gvdgi~TD~ 260 (263)
T cd08567 229 ALGLKVVPWTVNDPEDMARLIDLGVDGIITDY 260 (263)
T ss_pred HCCCEEEEecCCCHHHHHHHHHcCCCEEEcCC
Confidence 35677999994 57888899999999988764
No 290
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=33.18 E-value=26 Score=35.83 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=25.3
Q ss_pred HHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 018935 172 AQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (348)
Q Consensus 172 A~~al~~LE~G~DGVvl~~~d~~~v~~l~~~ 202 (348)
-+.+-.+||.|+|||++.++|.+.+++|.++
T Consensus 15 k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~ 45 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDDEDVEKVRELGRI 45 (354)
T ss_pred HHHHHHHHHcCCCEEEECHhHhhhhhccceE
Confidence 5567789999999999999988888776553
No 291
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=33.11 E-value=2.3e+02 Score=26.56 Aligned_cols=102 Identities=10% Similarity=0.068 Sum_probs=58.7
Q ss_pred hhHHHHHHHhC-CcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 018935 60 KQVMTAAVERG-WNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (348)
Q Consensus 60 K~~vT~ALEsG-~~~~v~~~~~------~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~ 132 (348)
-+.+..|+++| ++.|.+...+ .++++++..+.. ..| +.+.|.+.-++ +... .
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~-------------~~g----v~liINd~~dl---A~~~-~ 87 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQ-------------EAG----AAALIAGDSRI---AGRV-K 87 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHH-------------HhC----CEEEEeCHHHH---HHHh-C
Confidence 46889999999 7999987543 123333333311 112 22345554332 2222 3
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 018935 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
++-|=+...| .|++.+-..+. ...+|.. .++.++|+. +.+.|+|=|.+.|
T Consensus 88 adGVHLg~~d---~~~~~~r~~~~--~~~iiG~s~~~s~~~a~~---A~~~gaDYv~~Gp 139 (221)
T PRK06512 88 ADGLHIEGNL---AALAEAIEKHA--PKMIVGFGNLRDRHGAME---IGELRPDYLFFGK 139 (221)
T ss_pred CCEEEECccc---cCHHHHHHhcC--CCCEEEecCCCCHHHHHH---hhhcCCCEEEECC
Confidence 4455553223 46777666553 4467776 567887755 5679999999853
No 292
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=32.89 E-value=39 Score=30.24 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCceeEEEe-cCCc-eeeee-eccCCCeEEEEcCCCCeeEEeeeeEEe-eccceeEEE
Q 018935 278 GPVHAYVLV-PGGK-TCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKI-ESRPLILVE 331 (348)
Q Consensus 278 GaVHaYv~~-pggk-T~YLS-EL~aG~eVLvVd~~G~tR~~~VGRvKI-E~RPLlLIe 331 (348)
|-+.=+|.. |+|+ |+||. .|+.||+|.+....|+... .- ..+|+++|=
T Consensus 58 ~~l~~~v~~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l------~~~~~~~~llia 109 (231)
T cd06191 58 DEISITVKRVPGGRVSNYLREHIQPGMTVEVMGPQGHFVY------QPQPPGRYLLVA 109 (231)
T ss_pred CeEEEEEEECCCCccchHHHhcCCCCCEEEEeCCccceEe------CCCCCCcEEEEe
Confidence 444444543 6564 99997 6999999999999887421 11 246777763
No 293
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=32.84 E-value=55 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=18.8
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEeec
Q 018935 296 ELKSGKEVIVVDQKGRQRTAVVGRVKIES 324 (348)
Q Consensus 296 EL~aG~eVLvVd~~G~tR~~~VGRvKIE~ 324 (348)
-|+.||.|.+.+..|+. ..+||+..
T Consensus 48 gi~~Gd~V~v~~~~G~~----~~~v~~~~ 72 (120)
T cd00508 48 GIKDGDLVRVSSRRGSV----VVRARVTD 72 (120)
T ss_pred CCCCCCEEEEEeCCEEE----EEEEEECC
Confidence 47899999999999853 35667643
No 294
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=32.71 E-value=2.2e+02 Score=29.72 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCCCCCCeeeecCCceeEEEe---cCCceeeee-----eccCCCeEEEEcC-CCCeeEEeeeeEE
Q 018935 266 NYIASRPFRVNAGPVHAYVLV---PGGKTCYLS-----ELKSGKEVIVVDQ-KGRQRTAVVGRVK 321 (348)
Q Consensus 266 ~Yva~RPFRVNAGaVHaYv~~---pggkT~YLS-----EL~aG~eVLvVd~-~G~tR~~~VGRvK 321 (348)
|.-.-.+.+++.|..|....+ .++....|. -++.||++++-+. .++.|++--|+++
T Consensus 386 ~l~~g~~~~l~~gt~~~~~~i~~i~~~~~~~l~l~~P~~~~~gdr~ilr~~~~~~~~tig~G~i~ 450 (460)
T PTZ00327 386 KLKKGESLMINIGSTTTGGRVVGIKDDGIAKLELTTPVCTSVGEKIALSRRVDKHWRLIGWGTIR 450 (460)
T ss_pred ccCCCCEEEEEecccEEEEEEEEeCCCeEEEEEECccEeccCCCEEEEEeccCCCcEEEEEEEEc
Confidence 444445556666666644433 222111222 1346777777666 3336666666554
No 295
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=32.50 E-value=4.8e+02 Score=25.45 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceE--------EEe-------ccCceEEEE
Q 018935 194 KAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGL--------LVG-------SFARGLFLV 258 (348)
Q Consensus 194 ~~v~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGm--------LVG-------S~S~glFLV 258 (348)
.|-.+|++++.... ...... ..|+|....+-..-+.+-||--+.=.--.|| ||| ++|.-+.|.
T Consensus 98 ~EN~rLr~LL~~~~-~~~~~~-i~A~Vi~r~~~~~~~~i~IdkGs~dGV~~g~~Vi~~~~GLVG~V~~V~~~~S~V~lit 175 (283)
T TIGR00219 98 QENVRLRELLNSPL-SSDEYK-ISAEVIYLNYDNYSTQVVINKGFNDGVYKDMPVIADGKGLVGKVVSVGSNTSRVLLLT 175 (283)
T ss_pred HHHHHHHHHhcCcc-cccCCc-eEEEEEEeCCCccccEEEEcCccccCCCCCCEEEcCCCceEEEEEEECCCeEEEEEEE
Confidence 46677888775432 222223 8999999999999899999977654333333 443 234444443
Q ss_pred eeccccCCCCCCCCeeeecCCceeEEEecC-Cc---e--eee---eeccCCCeEEEEcCCCCeeE-EeeeeEEe
Q 018935 259 HSECLESNYIASRPFRVNAGPVHAYVLVPG-GK---T--CYL---SELKSGKEVIVVDQKGRQRT-AVVGRVKI 322 (348)
Q Consensus 259 hsEt~es~Yva~RPFRVNAGaVHaYv~~pg-gk---T--~YL---SEL~aG~eVLvVd~~G~tR~-~~VGRvKI 322 (348)
+.. . .=|.++.-.-.+..+.--+ |. . .|+ ++++.||.|+.-+-+|..=. ..||+|+=
T Consensus 176 d~~-~------~v~v~v~~t~~~gi~~G~~~g~~~~l~l~~~~~~~~v~~GD~VvTSGlgg~fP~Gl~VG~V~~ 242 (283)
T TIGR00219 176 DYT-N------FVPAQILRSDFRGLIEGNGYGKTLEMNLVNRPAEKDIKKGDLIVTSGLGGRFPEGYPIGVVTS 242 (283)
T ss_pred cCC-C------ceEEEEecCCceEEEEecCCCCCcEEEEEECCCCCCCCCCCEEEECCCCCcCCCCCEEEEEEE
Confidence 322 2 1244554444444443321 22 2 233 46899999999988886555 78998853
No 296
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=32.12 E-value=50 Score=32.79 Aligned_cols=40 Identities=33% Similarity=0.514 Sum_probs=26.7
Q ss_pred cCCceeeeeeccCCCeEEE-E-cCCCCeeEEeeeeEEeeccceeEEE
Q 018935 287 PGGKTCYLSELKSGKEVIV-V-DQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 287 pggkT~YLSEL~aG~eVLv-V-d~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|--|.||++|+.||.|.+ + ...|.-+.- .-..+|+++|=
T Consensus 196 ~G~~S~~L~~l~~Gd~v~v~i~~p~g~F~l~-----~~~~~piImIa 237 (384)
T cd06206 196 RGVASSYLSSLRPGDSIHVSVRPSHSAFRPP-----SDPSTPLIMIA 237 (384)
T ss_pred eeehHHHHhhCCCCCeEEEEEecCCCccCCC-----CCCCCCEEEEe
Confidence 3557899999999999987 3 344543210 01358999884
No 297
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.08 E-value=1.5e+02 Score=30.19 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=64.2
Q ss_pred EEEEe---CchhHHHHHHHhCCcEEEEcCc-----chhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhh
Q 018935 53 VWIWT---ESKQVMTAAVERGWNTFVFLSE-----NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (348)
Q Consensus 53 vWiw~---~~K~~vT~ALEsG~~~~v~~~~-----~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e 124 (348)
++++. ...+.+..++|.|+|.+.+... |......|..+..+ ++.-+.++.. ..|.++++..
T Consensus 134 v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~----------ik~~~ipVIa-G~V~t~e~A~ 202 (368)
T PRK08649 134 VAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEF----------IYELDVPVIV-GGCVTYTTAL 202 (368)
T ss_pred EEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHH----------HHHCCCCEEE-eCCCCHHHHH
Confidence 45553 3578999999999999988431 11111112222111 1111333322 4678888766
Q ss_pred hhccccCCCCeEEEeCCCCe-----------eeehhhhhhccc-----------CCCceEEEE--cCCHHHHHHHHHHhh
Q 018935 125 QLQPADGQAENIVIDLPDWQ-----------VIPAENIVASFQ-----------GSGKTVFAI--SKTPSEAQIFLEALE 180 (348)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DW~-----------iIPlENliA~~q-----------~~~~~l~a~--v~~~~eA~~al~~LE 180 (348)
.+.. ..+|.|++ ..... -+|.--.|++.. +.+..|||. .++..| +..+|.
T Consensus 203 ~l~~--aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~d---iakAla 276 (368)
T PRK08649 203 HLMR--TGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGD---IAKAIA 276 (368)
T ss_pred HHHH--cCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHH---HHHHHH
Confidence 6554 36777766 32221 145322222211 113456664 445544 455566
Q ss_pred cccCeEEEecC
Q 018935 181 QGLGGIVLKVE 191 (348)
Q Consensus 181 ~G~DGVvl~~~ 191 (348)
.|+|+|++-+-
T Consensus 277 lGAd~Vm~Gs~ 287 (368)
T PRK08649 277 CGADAVMLGSP 287 (368)
T ss_pred cCCCeecccch
Confidence 89999998765
No 298
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=32.02 E-value=68 Score=32.36 Aligned_cols=31 Identities=10% Similarity=-0.019 Sum_probs=26.6
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEEcCc
Q 018935 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 49 ~~K~vWiw~-~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
....|++|| .+++.+...++.|+|+|+.+..
T Consensus 222 ~Gl~V~vWTVN~~~~~~~l~~~GVdgIiTD~P 253 (351)
T cd08608 222 SNLSVNLYTVNEPWLYSLLWCSGVPSVTSDAS 253 (351)
T ss_pred CCCEEEEEecCCHHHHHHHHHCCCCEEEECCH
Confidence 566799999 5689999999999999998654
No 299
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=31.84 E-value=1.1e+02 Score=28.19 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=28.4
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+++......+++...-..++.|++|.+.++.+++++.+.
T Consensus 68 ~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~a 108 (207)
T PRK11475 68 RMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQE 108 (207)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHH
Confidence 55777665544444444444589999999999999877553
No 300
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=31.82 E-value=76 Score=31.43 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=36.5
Q ss_pred CCeeeehhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 018935 142 DWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (348)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (348)
+|+.+- +.++++++..+-++.+- |++.++++.++ +.|+|||+ ||.|+.+.++.+
T Consensus 229 ~~~~l~-~~~v~~a~~~Gl~V~vWTVNd~~~~~~l~---~~GVDgIi--TD~P~~l~~~~~ 283 (316)
T cd08610 229 AYKKLF-SNDIRDYKAANIHTNVYVINEPWLFSLAW---CSGIHSVT--TNNIHLLKQLDH 283 (316)
T ss_pred chhhCC-HHHHHHHHHCCCEEEEECCCCHHHHHHHH---hCCcCEEE--eCCHHHHHHhhc
Confidence 445443 46777777766666654 78888877554 67999976 777886655443
No 301
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=31.72 E-value=50 Score=25.69 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=12.7
Q ss_pred ccCCCeEEEEcCCCCeeEEe
Q 018935 297 LKSGKEVIVVDQKGRQRTAV 316 (348)
Q Consensus 297 L~aG~eVLvVd~~G~tR~~~ 316 (348)
+++||+|-..|++|+--+.+
T Consensus 6 f~~GdrVQlTD~Kgr~~Ti~ 25 (54)
T PF14801_consen 6 FRAGDRVQLTDPKGRKHTIT 25 (54)
T ss_dssp --TT-EEEEEETT--EEEEE
T ss_pred CCCCCEEEEccCCCCeeeEE
Confidence 68999999999999876553
No 302
>PRK09206 pyruvate kinase; Provisional
Probab=31.67 E-value=1e+02 Score=32.62 Aligned_cols=97 Identities=13% Similarity=0.211 Sum_probs=64.6
Q ss_pred eecCCccccCCCCee-EE--EEEecChhhhhhhccc-cCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHH
Q 018935 97 FIKEGEVYDSGDRRV-GS--IIEVSTPQELQQLQPA-DGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPS 170 (348)
Q Consensus 97 ~~~~g~~~~~~gk~v-~~--~~~v~~~ed~e~~~~~-~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~ 170 (348)
...+|.+.+.+|-.+ +. -..-.+.+|.+.+.-. ....|++-+.|= -=.|+.+-+++++..+.+..|++...+.+
T Consensus 146 v~~~G~l~s~Kgvn~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~e 225 (470)
T PRK09206 146 VLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQE 225 (470)
T ss_pred EEECCEecCCCceeccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHH
Confidence 345665555444221 11 1122344444443222 236899999874 22377788888875445778999999999
Q ss_pred HHHHHHHHhhcccCeEEEecCCHH
Q 018935 171 EAQIFLEALEQGLGGIVLKVEDVK 194 (348)
Q Consensus 171 eA~~al~~LE~G~DGVvl~~~d~~ 194 (348)
-.+-+=++++. +|||++.+.|.+
T Consensus 226 av~nldeIl~~-~DgImVaRGDLg 248 (470)
T PRK09206 226 GLNNFDEILEA-SDGIMVARGDLG 248 (470)
T ss_pred HHHhHHHHHHh-CCEEEECcchhh
Confidence 99999999999 999999999864
No 303
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=31.66 E-value=28 Score=31.58 Aligned_cols=67 Identities=25% Similarity=0.303 Sum_probs=39.6
Q ss_pred EEEeccCceEEEEeeccc--cCCCCCCCCee-eecCCceeEEEecC-Cceeeeee--ccCCCeEEEEc---CCCCe
Q 018935 246 LLVGSFARGLFLVHSECL--ESNYIASRPFR-VNAGPVHAYVLVPG-GKTCYLSE--LKSGKEVIVVD---QKGRQ 312 (348)
Q Consensus 246 mLVGS~S~glFLVhsEt~--es~Yva~RPFR-VNAGaVHaYv~~pg-gkT~YLSE--L~aG~eVLvVd---~~G~t 312 (348)
..||=-++|+.|-+.=.. .-||+..|=.+ +--+-+|.+..... ..|-|++. |+.||+|++|| +.|.|
T Consensus 56 ~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT 131 (179)
T COG0503 56 KIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGT 131 (179)
T ss_pred EEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChH
Confidence 345556666666554333 34676666543 33344433333333 47777775 77999999999 56655
No 304
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=31.57 E-value=46 Score=31.99 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=54.6
Q ss_pred eEEEEEEEEEcCCcc-eEEEeec----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCceeEEE
Q 018935 216 MKATVTRVDVAGMGD-RVCVDLC----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHAYVL 285 (348)
Q Consensus 216 ~~atVt~V~~vGmGd-RVCVDtc----sll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNA-----GaVHaYv~ 285 (348)
.+++|++++++.-.- ++.++.- --+.||+=+.|. ... -..|||-+-. |-+.=+|.
T Consensus 103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~---------~~~------~~~R~ySias~p~~~~~l~~~ik 167 (339)
T PRK07609 103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFI---------LKD------GKRRSYSIANAPHSGGPLELHIR 167 (339)
T ss_pred EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEE---------CCC------CceeeeecCCCCCCCCEEEEEEE
Confidence 357888888776432 2344321 124455533332 111 1247777643 33333343
Q ss_pred -ecCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 286 -VPGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 286 -~pggk-T~YL-SEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|+|. |.|| .+|+.||+|.+-...|+-..- .-..+|+++|=
T Consensus 168 ~~~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~-----~~~~~~ivlIa 211 (339)
T PRK07609 168 HMPGGVFTDHVFGALKERDILRIEGPLGTFFLR-----EDSDKPIVLLA 211 (339)
T ss_pred ecCCCccHHHHHHhccCCCEEEEEcCceeEEec-----CCCCCCEEEEe
Confidence 46665 6798 589999999998888865311 12457888873
No 305
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=31.56 E-value=67 Score=31.71 Aligned_cols=133 Identities=13% Similarity=0.200 Sum_probs=88.7
Q ss_pred eCchhHHHHHHHhCCcEEEEcC-cchhhhhhccceeeeeeeeecCC--------------ccccCCCCeeEEEEEecChh
Q 018935 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEG--------------EVYDSGDRRVGSIIEVSTPQ 121 (348)
Q Consensus 57 ~~~K~~vT~ALEsG~~~~v~~~-~~~e~~~~l~~i~~i~~l~~~~g--------------~~~~~~gk~v~~~~~v~~~e 121 (348)
.-++.++..+|..|+.++++|- +++|.++++-+-.+..|.-..+= +-+..-+..+..+++|++.+
T Consensus 76 ~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~ 155 (255)
T COG3836 76 VGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRA 155 (255)
T ss_pred CCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHH
Confidence 3478999999999999999995 56888887777777766333211 23345567789999999999
Q ss_pred hhhhhcccc--CCCCeEEEeCCC--------Ce------eeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccC
Q 018935 122 ELQQLQPAD--GQAENIVIDLPD--------WQ------VIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLG 184 (348)
Q Consensus 122 d~e~~~~~~--~~~~~vvv~~~D--------W~------iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~D 184 (348)
-++.+-.-. ...|-|++-..| |+ .=+.|+++++.-. .+|..+ -..+++.|+-+ |+.|+.
T Consensus 156 gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~a-aGKaagil~~~p~~a~~y---l~lGa~ 231 (255)
T COG3836 156 GLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRA-AGKAAGILAADPADARRY---LALGAT 231 (255)
T ss_pred HHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHh-cCCccccccCCHHHHHHH---HHhCCe
Confidence 888755433 367878774433 11 1245677666433 233333 34566766655 678988
Q ss_pred eEEEecCCH
Q 018935 185 GIVLKVEDV 193 (348)
Q Consensus 185 GVvl~~~d~ 193 (348)
=|.+-.|..
T Consensus 232 fvavG~D~~ 240 (255)
T COG3836 232 FVAVGSDTG 240 (255)
T ss_pred EEEEeccHH
Confidence 888777644
No 306
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=31.52 E-value=4.9e+02 Score=25.20 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=65.5
Q ss_pred EEEe--CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecCh-----
Q 018935 54 WIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTP----- 120 (348)
Q Consensus 54 Wiw~--~~K~~vT~ALEsG~~~~v~~~~~------~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~----- 120 (348)
|++. .+.+.+..|..+|+|.++++-|| ++.+++ .+ +..+ .. .+..+.. .++.|.+.
T Consensus 6 ~LfvP~~~~~~~~ka~~~gaD~vilDLEDav~~~~k~~AR~--~v--~~~l--~~---~~~~~~~--~~VRIn~~~~~~~ 74 (288)
T TIGR01588 6 MMFVPGNNPAMISDAFIYGADSVMFDLEDAVSLAEKDSARL--LV--YEAL--QT---PDYGDTE--TVVRINGLDTPFG 74 (288)
T ss_pred eeecCCCCHHHHHhhhhcCCCEEEEecccCCCcchHHHHHH--HH--HHHH--hc---cCCCCCE--EEEEECCCCChhH
Confidence 4444 46788899999999999999776 222221 11 0000 00 1112333 34555532
Q ss_pred -hhhhhhccccCCCCeEEEeCCCCeeeeh---hhhhhcc---------cCCCceEEEEcCCHHHHHHHHHHhh--cccCe
Q 018935 121 -QELQQLQPADGQAENIVIDLPDWQVIPA---ENIVASF---------QGSGKTVFAISKTPSEAQIFLEALE--QGLGG 185 (348)
Q Consensus 121 -ed~e~~~~~~~~~~~vvv~~~DW~iIPl---ENliA~~---------q~~~~~l~a~v~~~~eA~~al~~LE--~G~DG 185 (348)
+|+..+.. ...+.+++ +++=.. +.+.+.+ ....+.+++.+.|++-..-+-+++. -|+||
T Consensus 75 ~~di~~~l~--~g~~givl----PKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~ 148 (288)
T TIGR01588 75 LADIKAVVK--AGVDVVRL----PKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMG 148 (288)
T ss_pred HHHHHHHHh--cCCCEEEe----CCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceE
Confidence 33444332 13455555 111111 1121111 1124568888888887777777773 47888
Q ss_pred EEEecCCHH
Q 018935 186 IVLKVEDVK 194 (348)
Q Consensus 186 Vvl~~~d~~ 194 (348)
+.+-+.|..
T Consensus 149 l~~G~~Dls 157 (288)
T TIGR01588 149 IALGAEDYV 157 (288)
T ss_pred EEeCHHHHH
Confidence 888887654
No 307
>PF04203 Sortase: Sortase family; InterPro: IPR005754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C60 (clan C-) and include the members of both subfamilies of sortases. The Staphylococcus aureus sortase is a transpeptidase that attaches surface proteins to the cell wall; it cleaves between the Gly and Thr of the LPXTG motif and catalyses the formation of an amide bond between the carboxyl-group of threonine and the amino-group of the cell-wall peptidoglycan []. Sortase homologues are found in almost all Gram-positives, a single Gram-negative (Shewanella putrefaciens) and an archaean (Methanobacterium thermoautotrophicum), where cell wall LPXTG-mediated decoration has not been reported [, ]. Surface proteins not only promote interaction between the invading pathogen and animal tissues, but also provide ingenious strategies for bacterial escape from the host's immune response. In the case of S. aureus protein A, immunoglobulins are captured on the microbial surface and camouflage bacteria during the invasion of host tissues. S. aureus mutants lacking the srtA gene fail to anchor and display some surface proteins and are impaired in the ability to cause animal infections. Sortase acts on surface proteins that are initiated into the secretion (Sec) pathway and have their signal peptide removed by signal peptidase. The S. aureus genome encodes two sets of sortase and secretion genes. It is conceivable that S. aureus has evolved more than one pathway for the transport of 20 surface proteins to the cell wall envelope. ; PDB: 2W1K_A 2OQZ_A 1RZ2_A 2OQW_A 1T2W_A 1IJA_A 1T2P_A 1T2O_C 2KID_A 3RCC_N ....
Probab=31.51 E-value=62 Score=26.60 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.7
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 018935 287 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (348)
Q Consensus 287 pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvK 321 (348)
.+..-..|.+++.||+|.+.+.+|+..+--|=+++
T Consensus 51 ~~~~F~~L~~~~~gd~i~~~~~~g~~~~Y~V~~~~ 85 (128)
T PF04203_consen 51 GGAMFSNLNKLKKGDEIYLTTPDGKTYEYRVTSVK 85 (128)
T ss_dssp TSSTTCGGGGGHTT-EEEEEETSSEEEEEEEEEEE
T ss_pred CCcccccccccCCCCEEEEEEecCEEEEEEEEEEE
Confidence 34555678999999999999999998666666665
No 308
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.46 E-value=3.2e+02 Score=24.77 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=46.1
Q ss_pred EEEecChhhhhhhcccc--CCCCeEEEeCCCCeeeehhhhhhcccCCCce--E-EEEcCCHHHHHHHHHHhhcccCeEEE
Q 018935 114 IIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSGKT--V-FAISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 114 ~~~v~~~ed~e~~~~~~--~~~~~vvv~~~DW~iIPlENliA~~q~~~~~--l-~a~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
++...++++....+..+ +....+-+..++++- +++++.+...... + ...+-+.++++.+ ++.|+|||++
T Consensus 17 v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A---~~~gAdgv~~ 90 (187)
T PRK07455 17 VIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKLPECIIGTGTILTLEDLEEA---IAAGAQFCFT 90 (187)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhCCCcEEeEEEEEcHHHHHHH---HHcCCCEEEC
Confidence 34556666655544433 356777777666643 3444433322222 2 2355566888877 5679999999
Q ss_pred ecCCHHHH
Q 018935 189 KVEDVKAV 196 (348)
Q Consensus 189 ~~~d~~~v 196 (348)
.-.|++.+
T Consensus 91 p~~~~~~~ 98 (187)
T PRK07455 91 PHVDPELI 98 (187)
T ss_pred CCCCHHHH
Confidence 88887654
No 309
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=31.42 E-value=66 Score=32.25 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=32.8
Q ss_pred eehhhhhhcccCCCceEEE-EcCCH------HHHHHHHHHh--hcccCeEEEecCCHHHHHH
Q 018935 146 IPAENIVASFQGSGKTVFA-ISKTP------SEAQIFLEAL--EQGLGGIVLKVEDVKAVLA 198 (348)
Q Consensus 146 IPlENliA~~q~~~~~l~a-~v~~~------~eA~~al~~L--E~G~DGVvl~~~d~~~v~~ 198 (348)
++..+++++++..+-.|++ .+++. .++..+...+ +.|+|||+ |+.|+.+.+
T Consensus 290 ~~~~~~v~~ah~~Gl~V~~WTVn~~~~~~~~~d~~~~~~~~~~~~GVDGIi--TD~P~~~~~ 349 (355)
T PRK11143 290 IKLTGMVKEAHQAKLVVHPYTVRADQLPEYATDVNQLYDILYNQAGVDGVF--TDFPDKAVK 349 (355)
T ss_pred cChHHHHHHHHHcCCEEEEEEeccccchhhhcChHHHHHHHHHccCCCEEE--cCChHHHHH
Confidence 4456899998877777655 34431 1233333333 88999999 888886653
No 310
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=31.35 E-value=60 Score=29.93 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=38.8
Q ss_pred CCCeeeecC-----CceeEEEecCCceeeeeeccCCCeE-EEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 270 SRPFRVNAG-----PVHAYVLVPGGKTCYLSELKSGKEV-IVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 270 ~RPFRVNAG-----aVHaYv~~pggkT~YLSEL~aG~eV-LvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
.|||-+-.. -+.=+|..-|.-|.||..|+.||+| .+....|+.-. + -..+|+++|-
T Consensus 43 ~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~~G~~v~~i~gP~G~~~~----~--~~~~~~llia 104 (248)
T cd06219 43 RIPLTIADWDPEKGTITIVVQVVGKSTRELATLEEGDKIHDVVGPLGKPSE----I--ENYGTVVFVG 104 (248)
T ss_pred ccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcCCCCEeeeeecCCCCCee----c--CCCCeEEEEe
Confidence 367765332 2334455568889999999999999 59999997532 1 1257888875
No 311
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=31.25 E-value=50 Score=33.43 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=65.7
Q ss_pred hHHHHHHHhCCcEEEEcCcchhhhhhccceeeeee---eeecCC----------ccccCCCCeeEEEEEecChhhhhhhc
Q 018935 61 QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFIKEG----------EVYDSGDRRVGSIIEVSTPQELQQLQ 127 (348)
Q Consensus 61 ~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~---l~~~~g----------~~~~~~gk~v~~~~~v~~~ed~e~~~ 127 (348)
+-.-++||.|.+++++++.-......+-.+ +++ ++..+. ..++.-|..+ .++...+.++++.+.
T Consensus 61 e~~la~Le~g~~a~~~~SGmaAi~~~l~~l--l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v-~~~d~~d~~~l~~~l 137 (386)
T PF01053_consen 61 EQRLAALEGGEDALLFSSGMAAISAALLAL--LKPGDHIVASDDLYGGTYRLLEELLPRFGVEV-TFVDPTDLEALEAAL 137 (386)
T ss_dssp HHHHHHHHT-SEEEEESSHHHHHHHHHHHH--S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEE-EEESTTSHHHHHHHH
T ss_pred HHHHHHhhcccceeeccchHHHHHHHHHhh--cccCCceEecCCccCcchhhhhhhhcccCcEE-EEeCchhHHHHHhhc
Confidence 444589999999999998744332222222 221 222222 2334456553 343444555554433
Q ss_pred cccCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 018935 128 PADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (348)
Q Consensus 128 ~~~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (348)
.. +.+.|.++.. ..+++.++.|.+.++..+ .++..|.|.=-.-..+..|+.|+|
T Consensus 138 ~~--~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vVDnT~atp~~~~pL~~GaD 194 (386)
T PF01053_consen 138 RP--NTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVVDNTFATPYNQNPLELGAD 194 (386)
T ss_dssp CT--TEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEEECTTTHTTTC-GGGGT-S
T ss_pred cc--cceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEeeccccceeeeccCcCCce
Confidence 22 5667777765 578999999988776543 477777776555677889999998
No 312
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=31.25 E-value=1.5e+02 Score=25.49 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=39.0
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-+.. .--+++..++. ....++... ...+......+++.|+|+++.+|-+..++.+.
T Consensus 44 ~~dlvild~~~~~~-~g~~~~~~lr~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 111 (227)
T PRK09836 44 DYDLIILDIMLPDV-NGWDIVRMLRSANKGMPILLLT-ALGTIEHRVKGLELGADDYLVKPFAFAELLAR 111 (227)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHhcCCCCCEEEEE-cCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 45677774332221 11123333332 233455443 33455667788999999999999998877553
No 313
>PRK09774 fec operon regulator FecR; Reviewed
Probab=31.06 E-value=2.5e+02 Score=27.36 Aligned_cols=56 Identities=21% Similarity=0.144 Sum_probs=33.1
Q ss_pred cCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCC-CCC-CCCeeeecCCceeEEE
Q 018935 226 AGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESN-YIA-SRPFRVNAGPVHAYVL 285 (348)
Q Consensus 226 vGmGdRVCVDtcsll~~GEGmLVGS~S~glFLVhsEt~es~-Yva-~RPFRVNAGaVHaYv~ 285 (348)
+--|=+|-.|+.|-++-. -....+-.-|.+.|-.-.- -=+ .|||.|.+|...-=++
T Consensus 123 L~DGS~v~Ln~~S~l~~~----~~~~~R~v~L~~Gea~F~Va~d~~~rPF~V~t~~~~v~vl 180 (319)
T PRK09774 123 LEDGSLLTLNTQSAVDVR----FDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQLTAL 180 (319)
T ss_pred cCCCCEEEEcCCCeEEEe----ecCCeeEEEEeccEEEEEEcCCCCCCCEEEEeCCcEEEEe
Confidence 355778888888888721 1233344556566643221 113 4999999987644333
No 314
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=30.94 E-value=2.9e+02 Score=23.56 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=37.9
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-... .--.++..+.. ....++..... .+......+++.|+|+.+.+|-++.++.+.
T Consensus 45 ~~dlvild~~l~~~-~g~~~~~~lr~~~~~pvi~lt~~-~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~ 111 (225)
T PRK10529 45 KPDLIILDLGLPDG-DGIEFIRDLRQWSAIPVIVLSAR-SEESDKIAALDAGADDYLSKPFGIGELQAR 111 (225)
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHcCCCCCEEEEECC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 45777775432221 11122222221 23345544433 344556789999999999999998877553
No 315
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=30.89 E-value=2.4e+02 Score=28.64 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=57.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcch------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 018935 60 KQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~------e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~ 133 (348)
-+.+..|++.|++.|.....+. +.++++..+.. ..| ..+-|.+.-|+... . .+
T Consensus 160 l~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~-------------~~~----~~lIIND~vdlAl~---~-~a 218 (347)
T PRK02615 160 LEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCH-------------RYG----ALFIVNDRVDIALA---V-DA 218 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHH-------------HhC----CeEEEeChHHHHHH---c-CC
Confidence 4579999999999998875432 33444444311 111 23345554443222 2 34
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
+-|=+...| +|.+..-..+ +.+.-|-+.+.|.+|++.+ .+.|+|-|.+.
T Consensus 219 DGVHLgq~d---l~~~~aR~ll-g~~~iIG~S~Hs~~e~~~A---~~~GaDYI~lG 267 (347)
T PRK02615 219 DGVHLGQED---LPLAVARQLL-GPEKIIGRSTTNPEEMAKA---IAEGADYIGVG 267 (347)
T ss_pred CEEEeChhh---cCHHHHHHhc-CCCCEEEEecCCHHHHHHH---HHcCCCEEEEC
Confidence 555554444 4554443322 3334566778888887554 57899999873
No 316
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.74 E-value=3.2e+02 Score=27.04 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=59.2
Q ss_pred hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeEEE
Q 018935 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIVI 138 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~~~vvv 138 (348)
-+.+..|-|+|+|++++++=-.|...++..... ..|-....++.-++ .+-++.++......=|.+-
T Consensus 112 e~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~-------------~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE-------------KHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH-------------HcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 346889999999999998522333333332211 11222222333333 4555555544322222222
Q ss_pred e--CCCCeee---ehhhhhhcccCCC-ceE--EEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 139 D--LPDWQVI---PAENIVASFQGSG-KTV--FAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 139 ~--~~DW~iI---PlENliA~~q~~~-~~l--~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
. .++=+.- ++..+|..+.+-. ..+ --.+++.++|+.+.++ +|||++-+.
T Consensus 179 ~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~----ADGVIVGSA 235 (265)
T COG0159 179 RMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA----ADGVIVGSA 235 (265)
T ss_pred cccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh----CCeEEEcHH
Confidence 1 0111111 3667777665422 222 2347788887766554 999999876
No 317
>PRK07695 transcriptional regulator TenI; Provisional
Probab=30.69 E-value=3.9e+02 Score=23.87 Aligned_cols=103 Identities=10% Similarity=0.041 Sum_probs=55.9
Q ss_pred hhHHHHHHHhCCcEEEEcCcch---hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 018935 60 KQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~---e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~v 136 (348)
.+... ++++|++.+.++..+. ++.+....+.. -|.. ...+.|.+.-++.. .. ..+-+
T Consensus 18 ~~~~~-~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~--------------~~~~-~~~liin~~~~la~---~~-~~~gv 77 (201)
T PRK07695 18 VAVAM-QIHSEVDYIHIREREKSAKELYEGVESLLK--------------KGVP-ASKLIINDRVDIAL---LL-NIHRV 77 (201)
T ss_pred HHHHH-HHhCCCCEEEEcCCCCCHHHHHHHHHHHHH--------------hCCC-CCeEEEECHHHHHH---Hc-CCCEE
Confidence 34554 8999999999986432 22111122211 1111 11234555443222 22 33445
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
-+...| .|++.+...+. +..|.+.+.+.+|++ .+.+.|+|-+++.+
T Consensus 78 Hl~~~~---~~~~~~r~~~~--~~~ig~s~~s~e~a~---~a~~~Gadyi~~g~ 123 (201)
T PRK07695 78 QLGYRS---FSVRSVREKFP--YLHVGYSVHSLEEAI---QAEKNGADYVVYGH 123 (201)
T ss_pred EeCccc---CCHHHHHHhCC--CCEEEEeCCCHHHHH---HHHHcCCCEEEECC
Confidence 554333 35565555442 346778888888865 45688999998754
No 318
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=30.46 E-value=33 Score=34.70 Aligned_cols=39 Identities=26% Similarity=0.414 Sum_probs=28.8
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEE
Q 018935 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILV 330 (348)
Q Consensus 288 ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLI 330 (348)
|--|.||.+|+.||+|-+-..-|+.-... .-+.+|+++|
T Consensus 183 G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp----~~~~~~iImI 221 (367)
T PLN03115 183 GVCSNFLCDLKPGAEVKITGPVGKEMLMP----KDPNATIIML 221 (367)
T ss_pred eehHhhHhhCCCcCEEEEEeecCCceeCC----cCCCCCEEEE
Confidence 44578999999999999998888652111 1245789987
No 319
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=30.39 E-value=1.5e+02 Score=28.50 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=45.5
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
.+.-|+| ..|+ ++-.++..--.+..++-...+..+......+|..|+..++..|.+.+++.++
T Consensus 19 ~~~~v~~-~~~~----~~~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~ 81 (322)
T TIGR03815 19 RAPLVLV-DADM----AEACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVEL 81 (322)
T ss_pred cCCeEEE-Cchh----hhHHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHH
Confidence 3556666 5565 4555554333445577777777789999999999999999999998876543
No 320
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=30.28 E-value=86 Score=29.47 Aligned_cols=127 Identities=16% Similarity=0.074 Sum_probs=63.1
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcC----cch--------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEec-
Q 018935 52 RVWIWTESKQVMTAAVERGWNTFVFLS----ENQ--------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS- 118 (348)
Q Consensus 52 ~vWiw~~~K~~vT~ALEsG~~~~v~~~----~~~--------e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~- 118 (348)
-+|+.-.+-+.++ -|+|+++|++ .|. +-+..+.+.+ .-.+..|.++=..|..++.+....
T Consensus 55 Pvilfp~~~~~i~----~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~---~e~ip~gYiv~~~~~~v~~v~~a~~ 127 (205)
T TIGR01769 55 PVILFPGNVNGLS----RYADAVFFMSLLNSADTYFIVGAQILGAITILKLN---LEVIPMAYLIVGPGGAVGYVGKARE 127 (205)
T ss_pred CEEEECCCccccC----cCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcC---CcccceEEEEECCCCceeeecCccc
Confidence 3666555554444 5688888885 221 2221112222 111223333333334454443333
Q ss_pred ----Chhhhhhhcccc--CCCCeEEEeCCC--Ceeeehhhhh--hcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 018935 119 ----TPQELQQLQPAD--GQAENIVIDLPD--WQVIPAENIV--ASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 119 ----~~ed~e~~~~~~--~~~~~vvv~~~D--W~iIPlENli--A~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
.+|+....+... ...+++-++..+ ..-++.|-+- .+.-+.+.-+-...+|.++|+. +++.|+|||++
T Consensus 128 ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~---l~~~GAD~VVV 204 (205)
T TIGR01769 128 IPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYE---IVLAGADAIVT 204 (205)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHH---HHHcCCCEEEe
Confidence 355544433322 357788887632 2335544331 2111233344556788888875 56789999986
No 321
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=30.12 E-value=4.1e+02 Score=23.87 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=44.8
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHH-----HHHHHHHHh-hccc-CeEEEecCCHHHHHHHHHhh
Q 018935 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPS-----EAQIFLEAL-EQGL-GGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~-----eA~~al~~L-E~G~-DGVvl~~~d~~~v~~l~~~~ 203 (348)
+.+-++.-||.+++.+.+.+..+.-+.++.. =++.++.++ +.|. +-|++..-|+..++.+++..
T Consensus 77 ~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~ 147 (220)
T cd08579 77 GHGAKIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLD 147 (220)
T ss_pred CCCCcCCCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHC
Confidence 3455677799999998765667888888754 133344444 3453 67899999999888877654
No 322
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=30.10 E-value=1.8e+02 Score=24.50 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=28.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..++... +..+......+++.|+++++.+|.+..++.+.
T Consensus 73 ~~ii~lt-~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~ 111 (221)
T PRK15479 73 LPVLLLT-ARSAVADRVKGLNVGADDYLPKPFELEELDAR 111 (221)
T ss_pred CCEEEEE-CCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHH
Confidence 3455443 33455566778999999999999998877553
No 323
>PF04085 MreC: rod shape-determining protein MreC; InterPro: IPR007221 MreC (murein formation C) is involved in the rod shape determination in Escherichia coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped.; GO: 0008360 regulation of cell shape; PDB: 2J5U_B 2QF4_B 2QF5_A.
Probab=29.95 E-value=1.6e+02 Score=25.87 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=33.0
Q ss_pred CeeeecCCceeEEEecCCce-----eee---eeccCCCeEEEEcCCCCeeE-EeeeeEE-eeccc
Q 018935 272 PFRVNAGPVHAYVLVPGGKT-----CYL---SELKSGKEVIVVDQKGRQRT-AVVGRVK-IESRP 326 (348)
Q Consensus 272 PFRVNAGaVHaYv~~pggkT-----~YL---SEL~aG~eVLvVd~~G~tR~-~~VGRvK-IE~RP 326 (348)
|.++.-...+..+.-.+..+ .|| ++++.||.|+.-+.+|..-. ..||+|+ ++..+
T Consensus 61 ~v~i~~~~~~Gi~~G~~~~~~~~~l~~i~~~~~i~~GD~V~TSG~~~~fP~Gi~VG~V~~v~~~~ 125 (152)
T PF04085_consen 61 SVKIERSGDRGILRGDGSNTGLLKLEYIPKDADIKKGDIVVTSGLGGIFPPGIPVGTVSSVEPDK 125 (152)
T ss_dssp EEEEECTTEEEEEEEEETTTTEEEEEEECTTS---TT-EEEEE-TTSSS-CCEEEEEEEEEECTT
T ss_pred EEEEecCCeeEEEEeCCCCCceEEEEECCCCCCCCCCCEEEECCCCCcCCCCCEEEEEEEEEeCC
Confidence 56666666666665555554 444 46889999999988885444 8999985 44443
No 324
>PLN02363 phosphoribosylanthranilate isomerase
Probab=29.90 E-value=4.7e+02 Score=25.31 Aligned_cols=118 Identities=11% Similarity=0.089 Sum_probs=60.7
Q ss_pred EEEEe---CchhHHHHHHHhCCc--EEEEcCcc-----hhhhhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChh
Q 018935 53 VWIWT---ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQ 121 (348)
Q Consensus 53 vWiw~---~~K~~vT~ALEsG~~--~~v~~~~~-----~e~~~~l~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e 121 (348)
.||.- .+.+-+..|.+.|+| +|||.+.. .+.++++.+. + ++. -+.|+++ .=.+++
T Consensus 47 ~~VKICGit~~eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~--l-----------~~~~~~~VgVf-v~~~~~ 112 (256)
T PLN02363 47 PLVKMCGITSARDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQV--A-----------REGGAKPVGVF-VDDDAN 112 (256)
T ss_pred ceEEECCCCcHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHh--c-----------cccCccEEEEE-eCCCHH
Confidence 35644 689999999999999 58875433 3555555442 1 111 2345555 234555
Q ss_pred hhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcC--CHHHHHHHHHH-hhcccCeEEEecC
Q 018935 122 ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISK--TPSEAQIFLEA-LEQGLGGIVLKVE 191 (348)
Q Consensus 122 d~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~--~~~eA~~al~~-LE~G~DGVvl~~~ 191 (348)
++..++... .-+.|-+++... ...++.+.. ..+++..++ +..+.-..+.. .+..+|.+||++.
T Consensus 113 ~I~~~~~~~-~ld~VQLHG~e~-----~~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~ 178 (256)
T PLN02363 113 TILRAADSS-DLELVQLHGNGS-----RAAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSA 178 (256)
T ss_pred HHHHHHHhc-CCCEEEECCCCC-----HHHHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCC
Confidence 555554433 457888876421 122333321 123443332 22221111111 1235899999975
No 325
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=29.88 E-value=2.6e+02 Score=26.55 Aligned_cols=104 Identities=24% Similarity=0.456 Sum_probs=50.3
Q ss_pred ceeeeeEEEEEEEEEcCCcceEEE-eecCCCCCCceEEEeccCceEEEEeeccc-cCCCC-----CCCCeeeecCCcee-
Q 018935 211 NLLSLMKATVTRVDVAGMGDRVCV-DLCSLMRPGEGLLVGSFARGLFLVHSECL-ESNYI-----ASRPFRVNAGPVHA- 282 (348)
Q Consensus 211 ~~l~L~~atVt~V~~vGmGdRVCV-Dtcsll~~GEGmLVGS~S~glFLVhsEt~-es~Yv-----a~RPFRVNAGaVHa- 282 (348)
..+.+....-.+++.+=.||||-. | +.|-++ +|.-++..|-+-. ...|+ ..|..++- |-|-
T Consensus 17 a~V~~~~G~~k~m~~L~iGD~Vla~d-------~~G~~~--yS~V~~flhr~~~~~~~F~~i~te~g~~l~LT--p~HLI 85 (217)
T PF01079_consen 17 ATVTLEDGGRKRMSDLKIGDRVLAVD-------SDGKLV--YSPVIMFLHRDPEQRAEFVVIETEDGRSLTLT--PNHLI 85 (217)
T ss_dssp -EEEBTTS-EEEGGG--TT-EEEEE--------TTS-EE--EEEEEEEEEEEEEEEEEEEEEEETTS-EEEE---TT-EE
T ss_pred CEEEeCCCCEeEHHHCCCCCEEEEec-------CCCcEE--EEeEEEEeccCccccEEEEEEEcCCCCeEEec--CCcEE
Confidence 345555555566677778998854 3 344444 4444444455421 11111 11333322 2332
Q ss_pred EEEecCC------ceeeeeeccCCCeEEE-EcCCCCeeEEeeeeEEeecc
Q 018935 283 YVLVPGG------KTCYLSELKSGKEVIV-VDQKGRQRTAVVGRVKIESR 325 (348)
Q Consensus 283 Yv~~pgg------kT~YLSEL~aG~eVLv-Vd~~G~tR~~~VGRvKIE~R 325 (348)
|+.-.++ +..|=++++.||-|++ .+..+..|...|=||+.+.+
T Consensus 86 ~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~~~~~~~~~~~~~V~~v~~~~~ 135 (217)
T PF01079_consen 86 FVADCNGSESSNFRAVFASDVRVGDCVLVSDEGGGKLRPSRVVRVSTVEK 135 (217)
T ss_dssp EEEETTTTEE---EEEEGGG--TT-EEEEE-TTT--EEEEEEEEEEEEEE
T ss_pred EEecCCCCcccccceeehhhCCCCCEEEEEEcCCCcEEEEEEEEEEEEEE
Confidence 2222222 5688899999999999 66788899999989887654
No 326
>PRK06801 hypothetical protein; Provisional
Probab=29.85 E-value=1.5e+02 Score=29.19 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=72.5
Q ss_pred CchhHHHHHHHhCCcEEEEcCcc------hhhhhhccceeeee--eeeecCCccccCCCC-eeE--EEEEecChhhhhhh
Q 018935 58 ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDR-RVG--SIIEVSTPQELQQL 126 (348)
Q Consensus 58 ~~K~~vT~ALEsG~~~~v~~~~~------~e~~~~l~~i~~i~--~l~~~~g~~~~~~gk-~v~--~~~~v~~~ed~e~~ 126 (348)
.+.+.+..|++.|++.|+++.-+ .+..+++..++.-. ++-.+=|.+-..++. ..+ ..-.-++||+..++
T Consensus 85 ~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f 164 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDF 164 (286)
T ss_pred CCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHH
Confidence 47899999999999999997432 23333333332111 111111111111100 000 00113677887777
Q ss_pred ccccCCCCeEEEeC-------CCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH-HHHHH
Q 018935 127 QPADGQAENIVIDL-------PDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV-KAVLA 198 (348)
Q Consensus 127 ~~~~~~~~~vvv~~-------~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~-~~v~~ 198 (348)
.... ..|++-+.. ..-..+.+|-|-.--...+.-|+..=.|----..+..+.+.|+++|=+.++=. .-...
T Consensus 165 ~~~t-gvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~~~~ 243 (286)
T PRK06801 165 VDRT-GIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAALAA 243 (286)
T ss_pred HHHH-CcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHHHHH
Confidence 7554 567777722 11113455543322112233455444422112335777899999999988743 33344
Q ss_pred HHHhh
Q 018935 199 LKEYF 203 (348)
Q Consensus 199 l~~~~ 203 (348)
+++++
T Consensus 244 ~~~~~ 248 (286)
T PRK06801 244 VEQRM 248 (286)
T ss_pred HHHHH
Confidence 44544
No 327
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=29.66 E-value=4.6e+02 Score=26.74 Aligned_cols=123 Identities=17% Similarity=0.104 Sum_probs=71.7
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 018935 52 RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (348)
Q Consensus 52 ~vWiw~~~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~ 131 (348)
+|..-+.+.+-...|.|-|+|.++... +.+..+++..+ ++ +++..+. +.+++.....+.
T Consensus 192 ~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~--~d-----------------~ii~tv~-~~~~~~~l~~l~ 250 (339)
T COG1064 192 EVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEI--AD-----------------AIIDTVG-PATLEPSLKALR 250 (339)
T ss_pred eEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHhh--Cc-----------------EEEECCC-hhhHHHHHHHHh
Confidence 455567777777888888888777654 34444444332 11 2343445 788888777777
Q ss_pred CCCeEEEeCCCC----eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHh-hcccCeEEEecCCHHHHHH
Q 018935 132 QAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVLKVEDVKAVLA 198 (348)
Q Consensus 132 ~~~~vvv~~~DW----~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~L-E~G~DGVvl~~~d~~~v~~ 198 (348)
....+++-+..- ..+|.-++|.. ...=.-..+.+..|.+.+|.-. |.++.-.+...-.+++|.+
T Consensus 251 ~~G~~v~vG~~~~~~~~~~~~~~li~~---~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~ 319 (339)
T COG1064 251 RGGTLVLVGLPGGGPIPLLPAFLLILK---EISIVGSLVGTRADLEEALDFAAEGKIKPEILETIPLDEINE 319 (339)
T ss_pred cCCEEEEECCCCCcccCCCCHHHhhhc---CeEEEEEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHHH
Confidence 666776656552 33667777764 1212233455667777776654 4555555544554555433
No 328
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=29.45 E-value=3.3e+02 Score=27.09 Aligned_cols=130 Identities=16% Similarity=0.283 Sum_probs=81.4
Q ss_pred chhHHHHHHHhC-CcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeE
Q 018935 59 SKQVMTAAVERG-WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENI 136 (348)
Q Consensus 59 ~K~~vT~ALEsG-~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~ed~e~~~~~~~~~~~v 136 (348)
.-|++.+||.+| .|+.|.-.|-+ | +++..+.+++.+-|-++--+++.+- ||-++.+ +...-+
T Consensus 77 ~SEi~~t~l~~g~iDaaVivcDga------G------TVI~~nP~lVQGigGR~SGLv~TtPIpevi~~I----e~~gGi 140 (259)
T TIGR03275 77 ASEILMTALKSGFIDAAVIVCDGA------G------TVITTNPALVQGLGGRISGLIETSPIPEVIEKI----EDEGGI 140 (259)
T ss_pred HHHHHHHHHhcCCcceEEEEecCc------C------eEEeCCHHHHhhccceeeeeeeccccHHHHHHH----HhcCCE
Confidence 478999999999 67655443211 1 1233445555555544444444332 3333333 344568
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHh-hcccCeEEEec--C--CHHHHHHHHHhhc
Q 018935 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVLKV--E--DVKAVLALKEYFD 204 (348)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~L-E~G~DGVvl~~--~--d~~~v~~l~~~~~ 204 (348)
|++..+-+|=|.+-+.-++.-.-.+|...+.++++|+..-+.- |.|++=+++.. . +.++..++.++.+
T Consensus 141 VLd~~tA~IDq~~Gv~~Aie~Gyk~IaVTv~~~~~a~~iRe~e~~~~~~~~if~VHtTGis~eea~~~~~~aD 213 (259)
T TIGR03275 141 VLDPDTATIDQIKGVEKAIELGYKKIAVTVADAEDAKAIRELESESGIDIIIFAVHTTGIDREDAEEVVQYAD 213 (259)
T ss_pred EeCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHHhccccCCcEEEEEEECCCCCHHHHHHHHHhhh
Confidence 8988889999999998887766778999999999998765432 23777666532 2 3355555555443
No 329
>PRK08999 hypothetical protein; Provisional
Probab=29.12 E-value=4.8e+02 Score=24.77 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=61.4
Q ss_pred hHHHHHHHhCCcEEEEcCcc---h---hhhhhccceeee--eeeeecCC-----------------ccc----c--CCCC
Q 018935 61 QVMTAAVERGWNTFVFLSEN---Q---QLAIDWSTIALL--DPLFIKEG-----------------EVY----D--SGDR 109 (348)
Q Consensus 61 ~~vT~ALEsG~~~~v~~~~~---~---e~~~~l~~i~~i--~~l~~~~g-----------------~~~----~--~~gk 109 (348)
+.+..++++|++.+..+..+ . ++++++..+..- .+++++|. +.- . +.++
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~GvHl~~~d~~~~~~r~~~~~~ 227 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADGVHLTSAQLAALAARPLPAGR 227 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCEEEcChhhcChHhhccCCCCC
Confidence 56778999999999987543 2 233333333210 12333322 100 0 1122
Q ss_pred eeEEEEEecChhhhhhhccccCCCCeEEEeCC-------CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcc
Q 018935 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLP-------DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQG 182 (348)
Q Consensus 110 ~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~-------DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G 182 (348)
.++. .+.+.++.+++.. ..+||+.+..- +.+-.-++-+-...+..+..++|.-.= ..+.+-++++.|
T Consensus 228 ~ig~--S~h~~~~~~~a~~--~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI--~~~~~~~~~~~g 301 (312)
T PRK08999 228 WVAA--SCHDAEELARAQR--LGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL--GPGDLEEAREHG 301 (312)
T ss_pred EEEE--ecCCHHHHHHHHh--cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC--CHHHHHHHHHhC
Confidence 3332 3345555444332 25899988321 122222332222223345568877532 334445578889
Q ss_pred cCeEEEe
Q 018935 183 LGGIVLK 189 (348)
Q Consensus 183 ~DGVvl~ 189 (348)
+|||.+-
T Consensus 302 ~~gva~i 308 (312)
T PRK08999 302 AQGIAGI 308 (312)
T ss_pred CCEEEEE
Confidence 9999764
No 330
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=28.95 E-value=3.1e+02 Score=23.31 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=27.2
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~ 198 (348)
..++..... .+......+++.|+|+++.+|-+..++..
T Consensus 74 ~~ii~l~~~-~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~ 111 (221)
T PRK10766 74 VGIILVTGR-TDSIDRIVGLEMGADDYVTKPLELRELLV 111 (221)
T ss_pred CCEEEEECC-CcHHHHHHHHHcCCCcEEeCCCCHHHHHH
Confidence 345544433 34455678899999999999999887654
No 331
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=28.92 E-value=4.5e+02 Score=23.95 Aligned_cols=134 Identities=14% Similarity=0.051 Sum_probs=62.5
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEEcCc---chhhhhhccce----eeeeeeeecCCccccCCCCeeEEEE--EecCh
Q 018935 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSII--EVSTP 120 (348)
Q Consensus 52 ~vWiw~--~~K~~vT~ALEsG~~~~v~~~~---~~e~~~~l~~i----~~i~~l~~~~g~~~~~~gk~v~~~~--~v~~~ 120 (348)
.+|+=- ++.+-+..+++.|++.+++... +.++.+++.+. ..+-.+-+.++.. ..+ -.+.... +. +.
T Consensus 76 pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~-~~~-~~v~~~~~~~~-~~ 152 (232)
T TIGR03572 76 PLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELD-GSD-YKVYSDNGRRA-TG 152 (232)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCC-CCc-EEEEECCCccc-CC
Confidence 356632 4667777789999999998863 34444544432 1111122222210 000 0111100 00 11
Q ss_pred hhhhhhcccc--CCCCeEEEeCCCC----eeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 018935 121 QELQQLQPAD--GQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 121 ed~e~~~~~~--~~~~~vvv~~~DW----~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
.+...++... ...+.+++...+- +=..+|.+-+-.+..+..|++. +++.+|++.++ .+.|+|||++.+
T Consensus 153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l--~~~gadgV~vg~ 228 (232)
T TIGR03572 153 RDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVA--LEAGASAVAAAS 228 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH--HHcCCCEEEEeh
Confidence 1111221211 2467787765211 1122333322222234455554 57888887644 345999999865
No 332
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=28.82 E-value=4.9e+02 Score=24.40 Aligned_cols=136 Identities=11% Similarity=0.144 Sum_probs=67.9
Q ss_pred EeCchhHHHHHHHhCCcEEEEcCcc--hhhhhhccceee--------------eeeeee-cCC------c---cccC-CC
Q 018935 56 WTESKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIAL--------------LDPLFI-KEG------E---VYDS-GD 108 (348)
Q Consensus 56 w~~~K~~vT~ALEsG~~~~v~~~~~--~e~~~~l~~i~~--------------i~~l~~-~~g------~---~~~~-~g 108 (348)
|+.+.+.+..+-+.||.++++..=. ....+.--++.+ ++-..+ +.| . ..+. .+
T Consensus 19 ~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~ 98 (289)
T cd02810 19 LLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPG 98 (289)
T ss_pred CCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHHHHHhccCC
Confidence 3456788888888999988876421 111111112222 221111 111 0 1122 35
Q ss_pred CeeEEEEEecChhhhhhhccccC--CCCeEEEeCCCCeee----------ehhhhhhcccCC-CceEEEEcC---CHHHH
Q 018935 109 RRVGSIIEVSTPQELQQLQPADG--QAENIVIDLPDWQVI----------PAENIVASFQGS-GKTVFAISK---TPSEA 172 (348)
Q Consensus 109 k~v~~~~~v~~~ed~e~~~~~~~--~~~~vvv~~~DW~iI----------PlENliA~~q~~-~~~l~a~v~---~~~eA 172 (348)
+++.+-+--.++++..+.+..+. ..+.+-+++.-+..- .+..++.++... +--|+.... +.+|.
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~ 178 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDI 178 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHH
Confidence 55544444446777777666554 368888876644322 133455554432 222444333 33344
Q ss_pred HHHHH-HhhcccCeEEEecC
Q 018935 173 QIFLE-ALEQGLGGIVLKVE 191 (348)
Q Consensus 173 ~~al~-~LE~G~DGVvl~~~ 191 (348)
...+. +.+.|+|+|.+...
T Consensus 179 ~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 179 VELAKAAERAGADGLTAINT 198 (289)
T ss_pred HHHHHHHHHcCCCEEEEEcc
Confidence 44444 45678999988643
No 333
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.42 E-value=4.5e+02 Score=24.99 Aligned_cols=103 Identities=15% Similarity=0.063 Sum_probs=59.4
Q ss_pred eeeeeecCCcccc-CCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCee--ee-----hhhhhhcccCCCceEEE
Q 018935 93 LDPLFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV--IP-----AENIVASFQGSGKTVFA 164 (348)
Q Consensus 93 i~~l~~~~g~~~~-~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~i--IP-----lENliA~~q~~~~~l~a 164 (348)
|..|.+.+|.... -+|+.--......+|.++.+.-... .++++.+-..|=.+ -| ++.|.+.. .+-.+=.
T Consensus 4 IPaIDl~~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~~-ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~--~~v~vGG 80 (241)
T PRK14114 4 VPAIDLFRGKVARMVKGKKENTIFYEKDPAELVEKLIEE-GFTLIHVVDLSKAIENSVENLPVLEKLSEFA--EHIQIGG 80 (241)
T ss_pred EEEEEEECCEEEEeeccccCcceEECCCHHHHHHHHHHC-CCCEEEEEECCCcccCCcchHHHHHHHHhhc--CcEEEec
Confidence 3445566665532 1232222223345777655544443 45655554444221 11 23333332 2446777
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHH
Q 018935 165 ISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKE 201 (348)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~---~d~~~v~~l~~ 201 (348)
-+++.++++.+|. .|+|=|++.+ +||+-++++.+
T Consensus 81 GIrs~e~~~~~l~---~Ga~rvvigT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 81 GIRSLDYAEKLRK---LGYRRQIVSSKVLEDPSFLKFLKE 117 (241)
T ss_pred CCCCHHHHHHHHH---CCCCEEEECchhhCCHHHHHHHHH
Confidence 8999999998775 7999999999 68887777644
No 334
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.35 E-value=50 Score=33.81 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=41.9
Q ss_pred ChhhhhhhccccC---CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 018935 119 TPQELQQLQPADG---QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (348)
Q Consensus 119 ~~ed~e~~~~~~~---~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (348)
.++|.+.+..... ..|+++|+...=--.=.-+.|..+...-.++.-.+.|..-++.+...++.|+|+|-
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEE
Confidence 4677777776665 58999998774333333344444333222344445555555566667788999984
No 335
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.25 E-value=1.1e+02 Score=28.11 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=33.5
Q ss_pred CCeeeehhhhhhcccCCCceEE-EEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 018935 142 DWQVIPAENIVASFQGSGKTVF-AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (348)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~-a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~ 197 (348)
+|+.+. +.++..++..+-.++ -.+++.++++.+ ++.|+|||+ |+.|+.+.
T Consensus 196 ~~~~~~-~~~v~~~~~~G~~v~vWTVN~~~~~~~l---~~~gVdgIi--TD~p~~~~ 246 (249)
T cd08561 196 GVPLVT-PRFVRAAHAAGLEVHVWTVNDPAEMRRL---LDLGVDGII--TDRPDLLL 246 (249)
T ss_pred CeecCC-HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--cCCHHHHH
Confidence 344443 477777776666655 456888777765 578999976 67777543
No 336
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=28.12 E-value=2.9e+02 Score=27.52 Aligned_cols=150 Identities=16% Similarity=0.234 Sum_probs=89.1
Q ss_pred eeeeccCCCCCCCCCcEEEEEeCchhHHHHHHHhC-CcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEE
Q 018935 36 CFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERG-WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSI 114 (348)
Q Consensus 36 ~~~~~~~~~~~~~~~K~vWiw~~~K~~vT~ALEsG-~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~ 114 (348)
++-||.+-+.-.....++=+ ---|++.+||.+| .|+.|.--|-+ .+++..+.+++.+-|-++--+
T Consensus 56 dfGM~T~~R~l~~~~~fv~F--GaSEil~t~l~~g~iDaaV~vcdGA------------GTVI~~~P~lVQGiGGrmSGL 121 (258)
T PF09872_consen 56 DFGMCTPNRKLEMDEDFVSF--GASEILMTALRRGLIDAAVIVCDGA------------GTVITTNPELVQGIGGRMSGL 121 (258)
T ss_pred hcCCCCCCeEEeccCceecc--cHHHHHHHHHhcCCcceEEEEecCC------------CeEEeCCHHHHhhccceeeee
Confidence 34566654442222222222 2479999999999 67655443211 122344555555555554444
Q ss_pred EEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh--cccCeEEEec--
Q 018935 115 IEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE--QGLGGIVLKV-- 190 (348)
Q Consensus 115 ~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE--~G~DGVvl~~-- 190 (348)
++.+- - +++....+...-+|++..+-+|=|++-+.-|+...-.+|...+.++++|+..-+ || .|++-+++..
T Consensus 122 v~T~P-I--~evi~~Ie~~ggiVLd~~tA~IDq~~Gv~kAie~Gyk~IaVTV~~~~~A~~iRe-le~~~~~~~~if~VHt 197 (258)
T PF09872_consen 122 VSTTP-I--PEVIERIEEKGGIVLDPETARIDQVEGVKKAIEMGYKRIAVTVADAEDAKKIRE-LEKEEGVNIYIFGVHT 197 (258)
T ss_pred eeccc-h--HHHHHHHHhcCCEEeCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHH-hhccCCCceEEEEEEc
Confidence 44332 2 223333345567888888888999999988877667789999999999887554 44 5888776543
Q ss_pred C--CHHHHHHHHHhh
Q 018935 191 E--DVKAVLALKEYF 203 (348)
Q Consensus 191 ~--d~~~v~~l~~~~ 203 (348)
. +.++...|.+++
T Consensus 198 TGis~eeA~~l~~~~ 212 (258)
T PF09872_consen 198 TGISEEEAERLFEYA 212 (258)
T ss_pred cCCCHHHHHHHHHHh
Confidence 2 234454444443
No 337
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).
Probab=27.97 E-value=94 Score=27.16 Aligned_cols=53 Identities=26% Similarity=0.427 Sum_probs=39.0
Q ss_pred eeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEeecccee
Q 018935 273 FRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLI 328 (348)
Q Consensus 273 FRVNAGaVH-----aYv~~pggkT~YLSEL~aG~eVLvVd~~-G~tR~~~VGRvKIE~RPLl 328 (348)
.-|+.|++. |-++.|| =+.+=.+++.||.|.|++.+ | +..-||++++-..-|.
T Consensus 72 v~Vd~~a~~~l~~Ga~lm~pG-V~~~~~~~~~Gd~V~I~~~~~~--~~vavG~a~~ss~ei~ 130 (150)
T TIGR03684 72 VVVDEGAVKFIINGADIMAPG-IVSADPSIKEGDIVFVVDETHR--KPLAVGIALMDAEEME 130 (150)
T ss_pred EEECccHHHHHhcCcccccCc-eecCCCCCCCCCEEEEEECCCC--eEEEEEEEeeCHHHHh
Confidence 667777765 4455544 33555689999999999976 5 6789999999876653
No 338
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=27.88 E-value=51 Score=33.20 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEeeccceeEEE
Q 018935 288 GGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 288 ggkT~YLSEL~aG~eVLvVd~~-G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|--|.||++|+.||.|-+.-.. |..+ .- .-+.+|+++|=
T Consensus 214 G~~S~~L~~l~~Gd~v~v~~~~~~~F~---lp--~~~~~piImIa 253 (406)
T cd06202 214 GVCSTWLNGLTPGDTVPCFVRSAPSFH---LP--EDPSVPVIMVG 253 (406)
T ss_pred ccHHHHHHhCCCCCEEEEEEeeCCccC---CC--CCCCCCEEEEc
Confidence 6678999999999999875332 2221 10 12458999983
No 339
>PLN02252 nitrate reductase [NADPH]
Probab=27.80 E-value=2.5e+02 Score=31.94 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=59.9
Q ss_pred eEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEe---
Q 018935 216 MKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLV--- 286 (348)
Q Consensus 216 ~~atVt~V~~vGmGd-RVCVDtcs-----ll~~GEGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~--- 286 (348)
.+++|++++++.-.= +..+.+-+ -+.+|+=+.|.-. ...|....+|.+..+-. .-|-+.=.|..
T Consensus 635 ~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~------~~g~~~~R~YSpaS~~~-~~g~lel~VK~~~~ 707 (888)
T PLN02252 635 IPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCAT------INGKLCMRAYTPTSSDD-EVGHFELVIKVYFK 707 (888)
T ss_pred EEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEe------cCCeEEEeeeEecccCC-CCCEEEEEEEEEec
Confidence 468899999886443 33343322 2345554443311 11222234554333210 12334444433
Q ss_pred -------c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEee-----ccceeEEE
Q 018935 287 -------P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE-----SRPLILVE 331 (348)
Q Consensus 287 -------p-ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE-----~RPLlLIe 331 (348)
| |.-|+||..|+.||+|.+-..-|+..-.-=|+.-|+ .||+++|=
T Consensus 708 ~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIA 765 (888)
T PLN02252 708 NVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLA 765 (888)
T ss_pred cccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEe
Confidence 2 668899999999999999999997532111333343 47888874
No 340
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=27.68 E-value=1e+02 Score=26.40 Aligned_cols=67 Identities=10% Similarity=0.032 Sum_probs=39.0
Q ss_pred CCCeEEEeCCCCee-eehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQV-IPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~i-IPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..|.++++..-... -.--.++..++.. ...++... ...+......+++.|+|+++.+|.++.++.+.
T Consensus 44 ~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 113 (227)
T TIGR03787 44 LPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLT-ARDSDFDTVSGLRLGADDYLTKDISLPHLLAR 113 (227)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHH
Confidence 45777774322110 0112233333322 33455544 33455567788999999999999998877653
No 341
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=27.62 E-value=4.7e+02 Score=28.00 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=70.9
Q ss_pred chhHHHHHHHhCCcEEEEcCcch-hhhhhccc----------------eeeeeeeeecCCc--------cccCCCCeeEE
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWST----------------IALLDPLFIKEGE--------VYDSGDRRVGS 113 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~-e~~~~l~~----------------i~~i~~l~~~~g~--------~~~~~gk~v~~ 113 (348)
+......+.+.|.+.++..|-.. ++...+.. ...++.++++|.. .+...|-.+.
T Consensus 617 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~- 695 (919)
T PRK11107 617 EQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLPPTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVV- 695 (919)
T ss_pred chhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhcccccccccccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEE-
Confidence 45666778899999888776432 22222211 1112335556652 2334443322
Q ss_pred EEEecChhhhhhhccccCCCCeEEEeCCCCee--eehhhhhhcc-cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 018935 114 IIEVSTPQELQQLQPADGQAENIVIDLPDWQV--IPAENIVASF-QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (348)
Q Consensus 114 ~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~i--IPlENliA~~-q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (348)
...+.++.-.... ....|.++++..-+.. +-+-..|.+. ......+++.... .+......+++.|+|+++.+|
T Consensus 696 --~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~-~~~~~~~~~~~~G~~~~l~KP 771 (919)
T PRK11107 696 --LCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAH-AMAGERERLLSAGMDDYLAKP 771 (919)
T ss_pred --EECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCC-CCHHHHHHHHHcCCCeEeeCC
Confidence 3345443222221 2246777775442221 1111222221 1223456665544 334556788999999999999
Q ss_pred CCHHHHHH
Q 018935 191 EDVKAVLA 198 (348)
Q Consensus 191 ~d~~~v~~ 198 (348)
-++.++..
T Consensus 772 ~~~~~L~~ 779 (919)
T PRK11107 772 IDEAMLKQ 779 (919)
T ss_pred CCHHHHHH
Confidence 99887654
No 342
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.22 E-value=2.9e+02 Score=28.78 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=67.0
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEEcCcch---hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 018935 53 VWIWTESKQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (348)
Q Consensus 53 vWiw~~~K~~vT~ALEsG~~~~v~~~~~~---e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (348)
+++-.+..+.+.+.+|.|+|-|+++.-|- ...+-+..|..--| +.. .....|.+.++-..+...
T Consensus 148 vg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p------------~~~-vi~g~V~T~e~a~~l~~a 214 (404)
T PRK06843 148 VSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYP------------NLD-LIAGNIVTKEAALDLISV 214 (404)
T ss_pred EeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCC------------CCc-EEEEecCCHHHHHHHHHc
Confidence 34333567899999999999988765331 22222223321111 111 123367888875555442
Q ss_pred cCCCCeEEEeC-----------CCCeeee-hh---hhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 018935 130 DGQAENIVIDL-----------PDWQVIP-AE---NIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (348)
Q Consensus 130 ~~~~~~vvv~~-----------~DW~iIP-lE---NliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (348)
.+|.|.+-- .+|- .| +. .+-..++..+..|||. +++..|+. .+|..|+|+|++-.-
T Consensus 215 --GaD~I~vG~g~Gs~c~tr~~~g~g-~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~---KALalGA~aVmvGs~ 287 (404)
T PRK06843 215 --GADCLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEVCKNTNICIIADGGIRFSGDVV---KAIAAGADSVMIGNL 287 (404)
T ss_pred --CCCEEEECCCCCcCCcceeecCCC-CChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH---HHHHcCCCEEEEcce
Confidence 567776531 1331 23 22 2222234446678876 56777765 456799999998654
No 343
>PTZ00300 pyruvate kinase; Provisional
Probab=26.90 E-value=96 Score=32.61 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCCeEEEeCCC--CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 018935 132 QAENIVIDLPD--WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (348)
Q Consensus 132 ~~~~vvv~~~D--W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (348)
..+++.+.|=. =.+.-+-+++... +.+..|++...+.+--+-+=+++ .|+|||++.+.|.+
T Consensus 160 gvd~I~~SfVrsaeDv~~vr~~l~~~-~~~~~IiaKIEt~eav~nldeI~-~~~DgImVaRGDLg 222 (454)
T PTZ00300 160 GVDMIFASFIRSAEQVGEVRKALGAK-GGDIMIICKIENHQGVQNIDSII-EESDGIMVARGDLG 222 (454)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhc-CCCceEEEEECCHHHHHhHHHHH-HhCCEEEEecchhh
Confidence 68898887641 1244445555432 34668999999999999999999 89999999999864
No 344
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=26.77 E-value=3.8e+02 Score=22.89 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=38.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-...=.+ .++..++. ....++.... ..+......+++.|+|+.+.+|-++.++.+.
T Consensus 44 ~~dlvild~~l~~~~g~-~l~~~lr~~~~~~pii~ls~-~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~ 111 (223)
T PRK10816 44 LPDIAIVDLGLPDEDGL-SLIRRWRSNDVSLPILVLTA-RESWQDKVEVLSAGADDYVTKPFHIEEVMAR 111 (223)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCCCeeEeCCCCHHHHHHH
Confidence 45777775332221111 23333322 2344555443 3445556789999999999999998876543
No 345
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=26.75 E-value=66 Score=30.40 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 288 ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|--|.||.+|+.||.|.+-...|..-... +-..+|+++|-
T Consensus 83 G~~S~~L~~lk~Gd~v~v~~p~G~~f~l~----~~~~~~~vlIA 122 (267)
T cd06182 83 GVCSNFLAGLQLGAKVTVFIRPAPSFRLP----KDPTTPIIMVG 122 (267)
T ss_pred cchhHHHhhCCCCCEEEEEEecCCcccCC----CCCCCCEEEEe
Confidence 45699999999999999999988322210 11258888874
No 346
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=26.69 E-value=21 Score=30.68 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeE-EeeccceeEEEEE
Q 018935 284 VLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRV-KIESRPLILVEAK 333 (348)
Q Consensus 284 v~~pggkT~YLSEL~aG~eVLvVd~~-G~tR~~~VGRv-KIE~RPLlLIeAe 333 (348)
|.+++|. +=+.+++.||.||..|.. |+...-.|-++ +-+...|+-|+.+
T Consensus 2 V~T~~G~-k~Ie~I~~GD~Vls~d~~tg~~~~~~V~~~f~~~~~~l~~i~~~ 52 (130)
T PF07591_consen 2 VHTADGL-KPIEDIKVGDRVLSYDEETGETEYKPVTATFVRETDELVDITLE 52 (130)
T ss_dssp ----------------------------------------------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 5678884 899999999999999954 55554444433 2244566666554
No 347
>PRK10537 voltage-gated potassium channel; Provisional
Probab=26.68 E-value=4.6e+02 Score=26.83 Aligned_cols=71 Identities=13% Similarity=-0.039 Sum_probs=44.1
Q ss_pred EEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 018935 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 113 ~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~----~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
.....++++.++++-. .+++.+|+...| .-+|+.+. -.+.+.++++.+++.++++.+ .+.|+|-|+.
T Consensus 285 I~GD~td~e~L~~AgI--~~A~aVI~~t~d----D~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L---~~~GaD~VIs 355 (393)
T PRK10537 285 IPGDSSDSAVLKKAGA--ARARAILALRDN----DADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKI---KRVHPDMIFS 355 (393)
T ss_pred EEeCCCCHHHHHhcCc--ccCCEEEEcCCC----hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHH---HhcCCCEEEC
Confidence 3434455555554442 357778775554 34555432 123457899999999987766 4579999775
Q ss_pred ecCC
Q 018935 189 KVED 192 (348)
Q Consensus 189 ~~~d 192 (348)
..+.
T Consensus 356 p~~l 359 (393)
T PRK10537 356 PQLL 359 (393)
T ss_pred HHHH
Confidence 5443
No 348
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=26.07 E-value=2.1e+02 Score=26.01 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=46.2
Q ss_pred eee-hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cc-cCeEEEecCCHHHHHHHHHhh
Q 018935 145 VIP-AENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QG-LGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 145 iIP-lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE-~G-~DGVvl~~~d~~~v~~l~~~~ 203 (348)
.|| ||.+++.+.+ +..+.-+.++.+.++..+..++ .| .+-|++..-|+..++.+++..
T Consensus 78 ~iPtL~evl~~~~~-~~~l~iEiK~~~~~~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~ 138 (226)
T cd08568 78 LIPTLEEVFRALPN-DAIINVEIKDIDAVEPVLEIVEKFNALDRVIFSSFNHDALRELRKLD 138 (226)
T ss_pred cCCCHHHHHHhcCC-CcEEEEEECCccHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHhC
Confidence 466 8999998754 4579999998877777777776 35 578999999999988887764
No 349
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=26.07 E-value=87 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEee
Q 018935 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (348)
Q Consensus 288 ggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE 323 (348)
.-+.+||+.++.||.+.+ +++..-+||-+++
T Consensus 35 ~~~i~f~~p~~~gd~l~~-----~~~v~~~g~~~~~ 65 (79)
T PF03061_consen 35 ELSIDFLRPVRPGDTLRV-----EARVVRVGRKSFT 65 (79)
T ss_dssp EEEEEESS-BBTTSEEEE-----EEEEEEEESSEEE
T ss_pred EEEEEEccccCCCeEEEE-----EEEEEEECCEEEE
Confidence 678899999999999988 5777777766554
No 350
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.81 E-value=2.5e+02 Score=26.30 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=39.0
Q ss_pred cChhhhhhhccccCCCCeEEEeCCCCe------eee-hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEE
Q 018935 118 STPQELQQLQPADGQAENIVIDLPDWQ------VIP-AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVL 188 (348)
Q Consensus 118 ~~~ed~e~~~~~~~~~~~vvv~~~DW~------iIP-lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl 188 (348)
.+|.++-+..... .+.+++-..|=+ ..+ ++.+... ....+.+ -+++.+|++.++. .|+|+|++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~---~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYE---IGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHH---CCCCEEEE
Confidence 3666654433332 565655444422 121 2333332 2333444 6999999998765 59999999
Q ss_pred ecCCH
Q 018935 189 KVEDV 193 (348)
Q Consensus 189 ~~~d~ 193 (348)
-+.-.
T Consensus 102 Gtaa~ 106 (228)
T PRK04128 102 GTKAF 106 (228)
T ss_pred Cchhc
Confidence 76643
No 351
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=25.78 E-value=1e+02 Score=31.44 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCCCeEEEeC-----------CCCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 018935 131 GQAENIVIDL-----------PDWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (348)
Q Consensus 131 ~~~~~vvv~~-----------~DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (348)
..++.+++.. .||. ||....+..+..|++ .+.+.++|+. .++.|+|||+.-
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~-----~l~~~i~~~~IPVI~G~V~t~e~A~~---~~~aGaDgV~~G 216 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPL-----NLKEFIGELDVPVIAGGVNDYTTALH---LMRTGAAGVIVG 216 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHH-----HHHHHHHHCCCCEEEeCCCCHHHHHH---HHHcCCCEEEEC
Confidence 3678888863 2443 444433444567776 5666666654 456899999844
No 352
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=25.74 E-value=1.5e+02 Score=23.98 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=26.4
Q ss_pred CCceeeeeeccCCCeEEE-EcCCCCeeEEeeeeEEeeccceeEEEEEECCEee
Q 018935 288 GGKTCYLSELKSGKEVIV-VDQKGRQRTAVVGRVKIESRPLILVEAKVIKLFT 339 (348)
Q Consensus 288 ggkT~YLSEL~aG~eVLv-Vd~~G~tR~~~VGRvKIE~RPLlLIeAe~~G~~~ 339 (348)
++..+.|+-|++|+++-. +|.+|+-... |...... =++++-..+|.|.
T Consensus 34 ~~~~k~L~~L~pGq~l~f~~d~~g~L~~L---~~~~~~~-~~~~~R~~DG~f~ 82 (85)
T PF04225_consen 34 DGEAKPLTRLKPGQTLEFQLDEDGQLTAL---RYERSPK-TTLYTRQSDGSFS 82 (85)
T ss_dssp GGGT--GGG--TT-EEEEEE-TTS-EEEE---EEEEETT-EEEEEE-TTS-EE
T ss_pred cCccchHhhCCCCCEEEEEECCCCCEEEE---EEEcCCc-EEEEEEeCCCCEE
Confidence 456789999999999976 8899986555 4555555 3455555677654
No 353
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=25.67 E-value=3.7e+02 Score=21.96 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=15.4
Q ss_pred CceeEEEecCCceeeeeeccCCCeEEEE
Q 018935 279 PVHAYVLVPGGKTCYLSELKSGKEVIVV 306 (348)
Q Consensus 279 aVHaYv~~pggkT~YLSEL~aG~eVLvV 306 (348)
-=|.++..+++ ...|+-||.|.++
T Consensus 53 eEHg~l~~~~~----~~~~~vGd~v~ii 76 (94)
T PF14031_consen 53 EEHGILRLPDG----ADRLKVGDKVEII 76 (94)
T ss_dssp SS-EEEE-STT----GCGT-TT-EEEEE
T ss_pred cceeEEECCCC----CCCCCCCCEEEEE
Confidence 34999999988 3357999999875
No 354
>PRK06354 pyruvate kinase; Provisional
Probab=25.58 E-value=1.3e+02 Score=32.70 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCCCeEEEeCC-CC-eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 018935 131 GQAENIVIDLP-DW-QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (348)
Q Consensus 131 ~~~~~vvv~~~-DW-~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (348)
...|++-+.|- +- .|+-+-+++.+..+....|++...+.+--+-+-++++. +|||++.+.|.+
T Consensus 190 ~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~-~DgImVaRGDLg 254 (590)
T PRK06354 190 QGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL-CDGLMVARGDLG 254 (590)
T ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEEEEccchhh
Confidence 36899999874 22 25666677754345678899999999999999999999 999999999853
No 355
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=25.50 E-value=2.5e+02 Score=23.32 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=28.7
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..++..... .+......+++.|++|.+.+|.+..++.+.
T Consensus 78 ~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 116 (210)
T PRK09935 78 VKVLFLSSK-SECFYAGRAIQAGANGFVSKCNDQNDIFHA 116 (210)
T ss_pred CcEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 445544443 555666789999999999999998877654
No 356
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.47 E-value=1.3e+02 Score=27.77 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=30.5
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 018935 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (348)
Q Consensus 149 ENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~ 198 (348)
..++..++..+-++++ .+++.++++.+ ++.|+|||+ |+.|+.+.+
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~~~~~~~l---~~~Gvd~Ii--TD~p~~~~~ 253 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNEKADMIRL---INWGVDGMF--TNYPDRLKE 253 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--eCCHHHHHH
Confidence 5677777777666655 46667776654 567999977 666665443
No 357
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=25.44 E-value=2.6e+02 Score=20.18 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 018935 170 SEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (348)
Q Consensus 170 ~eA~~al~~LE~G~DGVvl~~~d~~~v~~ 198 (348)
.+.......++.|+++++.+|-+..++.+
T Consensus 90 ~~~~~~~~~~~~g~~~~i~~p~~~~~l~~ 118 (129)
T PRK10610 90 AKKENIIAAAQAGASGYVVKPFTAATLEE 118 (129)
T ss_pred CCHHHHHHHHHhCCCeEEECCCCHHHHHH
Confidence 34455678889999999999998876643
No 358
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=25.36 E-value=1e+02 Score=28.98 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=31.1
Q ss_pred hhhhhcccCCCceEEEE-c--CCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 018935 149 ENIVASFQGSGKTVFAI-S--KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (348)
Q Consensus 149 ENliA~~q~~~~~l~a~-v--~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~ 198 (348)
+.+|..++..+-.+++- + ++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n~~~~~~~l---~~~GVdgIi--TD~p~~~~~ 282 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNNDPENAKTQ---VKAGVDAVI--VDSVLAIRR 282 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccCCHHHHHHH---HHcCCCEEE--ECCHHHHHH
Confidence 35666666666667664 4 777777654 567999977 888886654
No 359
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=25.05 E-value=3.1e+02 Score=23.23 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=46.4
Q ss_pred eeehhhhhhcccCCCceEEEEcCCH----HHHHHHHHHhhc-c-cCeEEEecCCHHHHHHHHHhh
Q 018935 145 VIPAENIVASFQGSGKTVFAISKTP----SEAQIFLEALEQ-G-LGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 145 iIPlENliA~~q~~~~~l~a~v~~~----~eA~~al~~LE~-G-~DGVvl~~~d~~~v~~l~~~~ 203 (348)
+..|+.++..+.+ +..++-..++. +-++..+..+++ | .+-|++.+-++..+..+++..
T Consensus 48 i~tL~e~l~~~~~-~~~i~leiK~~~~~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~ 111 (189)
T cd08556 48 IPTLEEVLELVKG-GVGLNIELKEPTRYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELD 111 (189)
T ss_pred CCCHHHHHHhccc-CcEEEEEECCCCCchhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhC
Confidence 8889999999877 67899999997 345556666655 3 799999999999888877754
No 360
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.89 E-value=1.2e+02 Score=24.41 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=18.4
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEee
Q 018935 296 ELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (348)
Q Consensus 296 EL~aG~eVLvVd~~G~tR~~~VGRvKIE 323 (348)
-|+.||.|.+.+..|+.+ .+||+-
T Consensus 44 gi~~Gd~V~v~s~~G~~~----~~v~~~ 67 (116)
T cd02786 44 GIADGDLVVVFNDRGSVT----LRAKVT 67 (116)
T ss_pred CCCCCCEEEEEcCCeEEE----EEEEEC
Confidence 478899999999999653 466653
No 361
>PRK10403 transcriptional regulator NarP; Provisional
Probab=24.82 E-value=2.8e+02 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=26.4
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
.++..... .+.......++.|++|++.+|.+..++.+.
T Consensus 82 ~ii~l~~~-~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~ 119 (215)
T PRK10403 82 QIIILTVS-DASSDVFALIDAGADGYLLKDSDPEVLLEA 119 (215)
T ss_pred eEEEEeCC-CChHHHHHHHHcCCCeEEecCCCHHHHHHH
Confidence 44444432 444556677999999999999988776543
No 362
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=24.81 E-value=1.1e+02 Score=28.78 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=26.3
Q ss_pred CCCcEEEEEe---CchhHHHHHHHhCCcEEEEcCc
Q 018935 48 SKPKRVWIWT---ESKQVMTAAVERGWNTFVFLSE 79 (348)
Q Consensus 48 ~~~K~vWiw~---~~K~~vT~ALEsG~~~~v~~~~ 79 (348)
.+.+.+++|| .+.+.+...++-|+|+++.+..
T Consensus 243 ~~Gl~v~~WTv~~n~~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 243 RSGLVCVSYGVLNNDPENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred HCCcEEEEECCccCCHHHHHHHHHcCCCEEEECCH
Confidence 3567899997 3588999999999999998653
No 363
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=24.72 E-value=1.3e+02 Score=24.26 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=29.8
Q ss_pred CCcEEEEE-eCchhHHHHHHHhCCcEEEEcCcc------hhhhhhcc
Q 018935 49 KPKRVWIW-TESKQVMTAAVERGWNTFVFLSEN------QQLAIDWS 88 (348)
Q Consensus 49 ~~K~vWiw-~~~K~~vT~ALEsG~~~~v~~~~~------~e~~~~l~ 88 (348)
++..+||= -++.+++..|+++|+.++|+..+. .+++++.+
T Consensus 39 ~~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~ 85 (105)
T PF07085_consen 39 KPGDLVITPGDREDIQLAAIEAGIACIILTGGLEPSEEVLELAKELG 85 (105)
T ss_dssp HTTEEEEEETT-HHHHHHHCCTTECEEEEETT----HHHHHHHHHHT
T ss_pred CCCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCC
Confidence 34789998 578999999999999999988542 34555555
No 364
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=24.19 E-value=72 Score=30.31 Aligned_cols=32 Identities=38% Similarity=0.687 Sum_probs=21.9
Q ss_pred eeEEEecCC--ceeeee--eccCCCeEEEEc---CCCCe
Q 018935 281 HAYVLVPGG--KTCYLS--ELKSGKEVIVVD---QKGRQ 312 (348)
Q Consensus 281 HaYv~~pgg--kT~YLS--EL~aG~eVLvVd---~~G~t 312 (348)
+.|+....| .|.||+ .+..|++||+|| ..|.|
T Consensus 153 ~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~T 191 (238)
T PRK08558 153 EEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGET 191 (238)
T ss_pred EEeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHH
Confidence 346544333 367776 688999999999 56655
No 365
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=23.91 E-value=2.6e+02 Score=20.88 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=29.5
Q ss_pred ceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeee--ccCCCeEEEE
Q 018935 244 EGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSE--LKSGKEVIVV 306 (348)
Q Consensus 244 EGmLVGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~pggkT~YLSE--L~aG~eVLvV 306 (348)
+|..+.+++.++|+|..|. . .-|..-+-|+.+ +.. +..||.|++-
T Consensus 4 ~G~Vi~~~~g~~~~V~~~~--g---------------~~~~c~~rGklr-~~~~~~~vGD~V~~~ 50 (64)
T cd04451 4 EGVVTEALPNAMFRVELEN--G---------------HEVLAHISGKMR-MNYIRILPGDRVKVE 50 (64)
T ss_pred EEEEEEEeCCCEEEEEeCC--C---------------CEEEEEECceee-cCCcccCCCCEEEEE
Confidence 5888888877888886542 1 123333556655 333 7899999887
No 366
>PLN02334 ribulose-phosphate 3-epimerase
Probab=23.88 E-value=5.1e+02 Score=23.83 Aligned_cols=109 Identities=11% Similarity=0.115 Sum_probs=60.4
Q ss_pred hhHHHHHHHhCCcEEEEcCcch----------hhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 018935 60 KQVMTAAVERGWNTFVFLSENQ----------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (348)
Q Consensus 60 K~~vT~ALEsG~~~~v~~~~~~----------e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (348)
.+.+..+++.|++.+=++-.|. +.++++..+ ..+.+.+-+.|.+|++....+..
T Consensus 23 ~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~----------------~~~~~~vhlmv~~p~d~~~~~~~ 86 (229)
T PLN02334 23 AEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH----------------TDAPLDCHLMVTNPEDYVPDFAK 86 (229)
T ss_pred HHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc----------------CCCcEEEEeccCCHHHHHHHHHH
Confidence 5688999999999887765432 223333322 12334566677788876655544
Q ss_pred cCCCCeEEEeCC-CCeeeehhhhhhcccCCCceEEEEcC--CHHHHHHHHHHhhcc-cCeEEE
Q 018935 130 DGQAENIVIDLP-DWQVIPAENIVASFQGSGKTVFAISK--TPSEAQIFLEALEQG-LGGIVL 188 (348)
Q Consensus 130 ~~~~~~vvv~~~-DW~iIPlENliA~~q~~~~~l~a~v~--~~~eA~~al~~LE~G-~DGVvl 188 (348)
. .++.+.+... +-.--|.+.+-. +.+.+.++-..++ +..| .+...++.| +|-|++
T Consensus 87 ~-gad~v~vH~~q~~~d~~~~~~~~-i~~~g~~iGls~~~~t~~~--~~~~~~~~~~~Dyi~~ 145 (229)
T PLN02334 87 A-GASIFTFHIEQASTIHLHRLIQQ-IKSAGMKAGVVLNPGTPVE--AVEPVVEKGLVDMVLV 145 (229)
T ss_pred c-CCCEEEEeeccccchhHHHHHHH-HHHCCCeEEEEECCCCCHH--HHHHHHhccCCCEEEE
Confidence 3 5788866555 223344444333 3333334444443 3333 334456664 998855
No 367
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=23.83 E-value=2.6e+02 Score=22.79 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=27.2
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
.++... +..+......+++.|+++++.+|.+..++.+.
T Consensus 79 ~ii~ls-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 116 (211)
T PRK15369 79 NILVLT-ARQEEHMASRTLAAGALGYVLKKSPQQILLAA 116 (211)
T ss_pred cEEEEe-CCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHH
Confidence 444443 44455566788999999999999988776543
No 368
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=23.76 E-value=1.3e+02 Score=25.25 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=28.0
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~ 198 (348)
..++.... ..+......+++.|++|.+.+|-++.++.+
T Consensus 77 ~~ii~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~ 114 (226)
T TIGR02154 77 IPIIMLTA-RGEEEDRVRGLETGADDYITKPFSPRELLA 114 (226)
T ss_pred CCEEEEec-CCCHHHHHHHHhcCcceEEeCCCCHHHHHH
Confidence 44555443 344566778999999999999999887654
No 369
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=23.53 E-value=1.8e+02 Score=24.51 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=22.5
Q ss_pred ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 018935 290 KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (348)
Q Consensus 290 kT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvK 321 (348)
--..|.+|+.||+|.+.+.+ ...+=.|=+++
T Consensus 58 ~F~~L~~l~~Gd~v~v~~~~-~~~~Y~V~~~~ 88 (126)
T cd06166 58 IFNRLDEVEKGDEIKVTTKN-GTYKYKITSIF 88 (126)
T ss_pred ccCChHHCCCCCEEEEEECC-EEEEEEEEEEE
Confidence 34679999999999999984 45555454443
No 370
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=23.52 E-value=1.3e+02 Score=24.70 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=36.5
Q ss_pred CCeeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEeeccce
Q 018935 271 RPFRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPL 327 (348)
Q Consensus 271 RPFRVNAGaVH-----aYv~~pggkT~YLSEL~aG~eVLvVd~~-G~tR~~~VGRvKIE~RPL 327 (348)
.-..|+.|++. +-++. -|=+..-.+++.||.|.|++.+ | ...-||++..-..-|
T Consensus 31 ~~v~vd~~a~~~l~~Ga~L~~-pGV~~~~~~~~~gd~V~I~~~~~~--~~iavG~a~~~s~e~ 90 (107)
T TIGR00451 31 KIVVVDNGAVKFLKNGADVMR-PGIVDADEDIKEGDDVVVVDENKD--RPLAVGIALMSGEEM 90 (107)
T ss_pred CEEEEChhHHHHHHCCccccC-CeeEeCCCCcCCCCEEEEEECCCC--eEEEEEEEecCHHHH
Confidence 33677777665 23333 3334555689999999999886 6 457899988766544
No 371
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=23.51 E-value=4.7e+02 Score=22.67 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=38.7
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..+.++++..-+..-.+ .++..+.. ....++..... .+......+++.|+|+++.+|-+..++.+.
T Consensus 49 ~~dlvild~~l~~~~g~-~~~~~lr~~~~~~pii~ls~~-~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~ 116 (239)
T PRK09468 49 SFHLMVLDLMLPGEDGL-SICRRLRSQNNPTPIIMLTAK-GEEVDRIVGLEIGADDYLPKPFNPRELLAR 116 (239)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEECC-CcHHHHHHHHhcCCCeEEECCCCHHHHHHH
Confidence 45777775443322111 22233322 23456655543 334455678999999999999998876553
No 372
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=23.50 E-value=5.8e+02 Score=27.52 Aligned_cols=118 Identities=11% Similarity=0.008 Sum_probs=66.3
Q ss_pred cEEEE--EeCc-hhHHHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhc
Q 018935 51 KRVWI--WTES-KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 127 (348)
Q Consensus 51 K~vWi--w~~~-K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~ 127 (348)
+.+.| ..+- +.+...-.+.|.+.++++.+ .+.++++.+- |.+ ..+...++++-++++-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d-~~~v~~~~~~-----------------g~~-v~~GDat~~~~L~~ag 461 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHD-PDHIETLRKF-----------------GMK-VFYGDATRMDLLESAG 461 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECC-HHHHHHHHhc-----------------CCe-EEEEeCCCHHHHHhcC
Confidence 44555 2232 33444444568888887764 5555555442 221 3555666666655433
Q ss_pred cccCCCCeEEEeCCCCee-eehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 018935 128 PADGQAENIVIDLPDWQV-IPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (348)
Q Consensus 128 ~~~~~~~~vvv~~~DW~i-IPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (348)
..+++.+|+...|.+. +-+= ..|+-...+.++++.++|.+++... .+.|+|-|+-.+-+.
T Consensus 462 --i~~A~~vvv~~~d~~~n~~i~-~~ar~~~p~~~iiaRa~d~~~~~~L---~~~Gad~v~~e~~e~ 522 (621)
T PRK03562 462 --AAKAEVLINAIDDPQTSLQLV-ELVKEHFPHLQIIARARDVDHYIRL---RQAGVEKPERETFEG 522 (621)
T ss_pred --CCcCCEEEEEeCCHHHHHHHH-HHHHHhCCCCeEEEEECCHHHHHHH---HHCCCCEEehhhHhH
Confidence 2357778877766532 1111 1122223456899999999887654 457999886555433
No 373
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=23.49 E-value=96 Score=30.84 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=29.5
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHHH
Q 018935 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVLA 198 (348)
Q Consensus 148 lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~~v~~ 198 (348)
++.|+... .-..-+-|-+.+++||. .++|.|+|||++.+ +||.+..+
T Consensus 181 l~~i~e~~-~vpVivdAGIgt~sDa~---~AmElGaDgVL~nSaIakA~dP~~mA~ 232 (267)
T CHL00162 181 LQIIIENA-KIPVIIDAGIGTPSEAS---QAMELGASGVLLNTAVAQAKNPEQMAK 232 (267)
T ss_pred HHHHHHcC-CCcEEEeCCcCCHHHHH---HHHHcCCCEEeecceeecCCCHHHHHH
Confidence 45555532 12223345677888876 46789999998865 68855443
No 374
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=23.48 E-value=2.5e+02 Score=26.54 Aligned_cols=58 Identities=24% Similarity=0.270 Sum_probs=35.9
Q ss_pred eeeehhhhhhc-------ccC-CCceEEEE-----c--CCHHHH-HHHHHHhhcccCeEEEecC-CHHHHHHHHH
Q 018935 144 QVIPAENIVAS-------FQG-SGKTVFAI-----S--KTPSEA-QIFLEALEQGLGGIVLKVE-DVKAVLALKE 201 (348)
Q Consensus 144 ~iIPlENliA~-------~q~-~~~~l~a~-----v--~~~~eA-~~al~~LE~G~DGVvl~~~-d~~~v~~l~~ 201 (348)
..+|.|..++. .++ .+.-|+|. + ...+|| +.+-...|.|+|+|.+.+- |+++++++.+
T Consensus 119 ~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~ 193 (243)
T cd00377 119 VLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAE 193 (243)
T ss_pred eecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHh
Confidence 45666654432 222 23445555 4 456665 4566678999999999765 6777766544
No 375
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=23.33 E-value=87 Score=32.85 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=48.2
Q ss_pred eEEEEEecChhhhhhhccccC-CCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 018935 111 VGSIIEVSTPQELQQLQPADG-QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (348)
Q Consensus 111 v~~~~~v~~~ed~e~~~~~~~-~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (348)
++..+.+. ++..+.+..+.. ..+.++++..+-.-..+.++|+.+... +.-|++ .+...++.+....+.|+|+|-
T Consensus 216 Vgaav~~~-~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~--g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 216 IGAAVGIN-GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA--GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ehheeeeC-ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE--eccCCHHHHHHHHHhCCCEEE
Confidence 34444442 344455555444 689999999876668888999988765 344555 444444444555678999997
No 376
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.27 E-value=1.2e+02 Score=24.65 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=31.3
Q ss_pred EEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEee
Q 018935 256 FLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (348)
Q Consensus 256 FLVhsEt~es~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE 323 (348)
+..|+.+..+|....+. -+.|+.+.-. +.-=--|+.||.|.+.+..|+.+ .+|++-
T Consensus 11 ~~~~s~~~~~~~l~~~~-------~~~~v~i~p~-dA~~~gi~~Gd~V~v~s~~G~i~----~~v~v~ 66 (123)
T cd02778 11 VHTHGHTANNPLLHELT-------PENTLWINPE-TAARLGIKDGDRVEVSSARGKVT----GKARLT 66 (123)
T ss_pred eecCCccccCHHHHhcC-------CCCeEEECHH-HHHHcCCCCCCEEEEEeCCCcEE----EEEEEc
Confidence 34566655555433321 2345555211 11122478899999999999643 466654
No 377
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.23 E-value=3e+02 Score=24.34 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=22.6
Q ss_pred chhHHHHH-HHhCCcEEEEcCcchhhhhhccceeeee
Q 018935 59 SKQVMTAA-VERGWNTFVFLSENQQLAIDWSTIALLD 94 (348)
Q Consensus 59 ~K~~vT~A-LEsG~~~~v~~~~~~e~~~~l~~i~~i~ 94 (348)
-.+.+... .+.|+|-||-...++++.++.-++.++.
T Consensus 22 ~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~ 58 (176)
T PF06506_consen 22 AVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVE 58 (176)
T ss_dssp HHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEE
T ss_pred HHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEE
Confidence 45566666 6789998887776677776655554443
No 378
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.22 E-value=1.1e+02 Score=29.49 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=38.2
Q ss_pred CCeeeecCCceeEEEecCCceeeee---eccCCCeEEEEcCCCCeeEEee
Q 018935 271 RPFRVNAGPVHAYVLVPGGKTCYLS---ELKSGKEVIVVDQKGRQRTAVV 317 (348)
Q Consensus 271 RPFRVNAGaVHaYv~~pggkT~YLS---EL~aG~eVLvVd~~G~tR~~~V 317 (348)
|-|--+.-..+.|+..+++..+||- -|+.||++.+.|.+|....+.+
T Consensus 5 ~~~v~~~~~~~~~~~l~~~~~~Hl~~VlRl~~gd~l~l~~g~g~~~~a~i 54 (246)
T COG1385 5 RLFVDEELAEGATVILTGDEAHHLKRVLRLKEGDELRLFDGSGGEFLAEI 54 (246)
T ss_pred eEeecccccCCCEEEECchhhhhHHheeecCCCCEEEEEeCCCcEEEEEE
Confidence 4444456667889999999999998 7899999999999998887633
No 379
>PRK15447 putative protease; Provisional
Probab=23.15 E-value=2.1e+02 Score=27.90 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=49.3
Q ss_pred CCCeEEEeCCC------CeeeehhhhhhcccCCCceEEEEcCC----HHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 018935 132 QAENIVIDLPD------WQVIPAENIVASFQGSGKTVFAISKT----PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (348)
Q Consensus 132 ~~~~vvv~~~D------W~iIPlENliA~~q~~~~~l~a~v~~----~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (348)
.+|-|.+.... |+.=-+...+..++..+.+|+..... .+|-+.+...++.|+|+|++ .|++.+.-+++
T Consensus 28 gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v--~d~g~l~~~~e 105 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA--NDLGAVRLLAE 105 (301)
T ss_pred CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE--eCHHHHHHHHh
Confidence 47777774332 66666777788777777788776644 45777888899999998774 67887766665
No 380
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=23.03 E-value=1.7e+02 Score=30.99 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=51.1
Q ss_pred CCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 018935 132 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (348)
Q Consensus 132 ~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (348)
..|++-+.|- -=.|+-+-++++.. +....+++...+.+--+-+=++++. +|||++.+.|.+
T Consensus 187 ~vD~ia~SFV~~~~di~~~r~~l~~~-~~~~~iiakIEt~~av~nldeI~~~-~DgImIargDLg 249 (480)
T cd00288 187 GVDMIFASFVRKASDVLEIREVLGEK-GKDIKIIAKIENQEGVNNFDEILEA-SDGIMVARGDLG 249 (480)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhc-CCCceEEEEECCHHHHHhHHHHHHh-cCEEEECcchhh
Confidence 6899999874 34477788888774 5577899999999999999999999 999999999854
No 381
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=22.96 E-value=98 Score=29.14 Aligned_cols=29 Identities=3% Similarity=0.066 Sum_probs=24.1
Q ss_pred CCcEEEEEe---CchhHHHHHHHhCCcEEEEc
Q 018935 49 KPKRVWIWT---ESKQVMTAAVERGWNTFVFL 77 (348)
Q Consensus 49 ~~K~vWiw~---~~K~~vT~ALEsG~~~~v~~ 77 (348)
....+.+|| .+.+.|...++.|+|+|+.+
T Consensus 249 ~Gl~v~vWTv~~n~~~~~~~l~~~GVdgIiTD 280 (282)
T cd08605 249 SGLELGTYGKLNNDAEAVERQADLGVDGVIVD 280 (282)
T ss_pred cCcEEEEeCCCCCCHHHHHHHHHcCCCEEEeC
Confidence 566799998 46889999999999999864
No 382
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=22.95 E-value=1.2e+02 Score=27.18 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=32.3
Q ss_pred CCceeEEEe-c-CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 278 GPVHAYVLV-P-GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 278 GaVHaYv~~-p-ggkT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|-+.=.|.. + |.-|+||.+ |+.||+|.+...-|..-.- - -..+|+++|=
T Consensus 53 ~~~~~~vk~~~~G~~s~~l~~~~~~g~~v~v~gP~G~~~~~----~-~~~~~illIa 104 (232)
T cd06190 53 GEWEFIIKRKPGGAASNALFDNLEPGDELELDGPYGLAYLR----P-DEDRDIVCIA 104 (232)
T ss_pred CEEEEEEEEcCCCcchHHHhhcCCCCCEEEEECCcccceec----C-CCCCcEEEEe
Confidence 334434443 3 446999976 7999999999888876321 0 1257888874
No 383
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=22.86 E-value=58 Score=30.92 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=30.6
Q ss_pred cCCceeEEEecCCce---eeeeeccCCCeEEEEcCCCCeeEEeeee
Q 018935 277 AGPVHAYVLVPGGKT---CYLSELKSGKEVIVVDQKGRQRTAVVGR 319 (348)
Q Consensus 277 AGaVHaYv~~pggkT---~YLSEL~aG~eVLvVd~~G~tR~~~VGR 319 (348)
+|+...--..|++.. .+|.+.++|| |+++|..|..+.+..|-
T Consensus 50 ~G~A~TV~~~~~d~~~~~~ai~~~~pGd-VlVid~~g~~~~a~~G~ 94 (222)
T TIGR02798 50 CGTAVTVLLQPGDNWMMHVAAEQIQEGD-VVVAACTAECEDGYFGD 94 (222)
T ss_pred EEEEEEEEeecCCchHHHHHHHhCCCCe-EEEEECCCCcceEeehH
Confidence 566655555555443 5788888876 77899999989888874
No 384
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=22.86 E-value=1.1e+02 Score=25.74 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=23.1
Q ss_pred eeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 018935 291 TCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (348)
Q Consensus 291 T~YLSEL~aG~eVLvVd~~G~tR~~~VGRvK 321 (348)
-..|.+|+.||+|.+.+. |+...=-|-+++
T Consensus 56 F~~L~~l~~Gd~i~v~~~-~~~~~Y~V~~~~ 85 (127)
T cd05828 56 FRFLGELEPGDIITLQTL-GGTYTYRVTSTR 85 (127)
T ss_pred hhChhcCCCCCEEEEEEC-CEEEEEEEeeEE
Confidence 457899999999999998 666666555554
No 385
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=22.78 E-value=74 Score=33.96 Aligned_cols=58 Identities=29% Similarity=0.481 Sum_probs=38.1
Q ss_pred CCCCCeeeec------CCceeEEEe----------cCCceeeeee-ccCCCeEEEEcC-CCCeeEEeeeeEEeeccceeE
Q 018935 268 IASRPFRVNA------GPVHAYVLV----------PGGKTCYLSE-LKSGKEVIVVDQ-KGRQRTAVVGRVKIESRPLIL 329 (348)
Q Consensus 268 va~RPFRVNA------GaVHaYv~~----------pggkT~YLSE-L~aG~eVLvVd~-~G~tR~~~VGRvKIE~RPLlL 329 (348)
..+|||-+-. +-+|=.|.+ .|.-|.||++ |+.||+|-+.-. .|.-+.- .-..+|+|+
T Consensus 381 ~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp-----~~~~~piIm 455 (597)
T TIGR01931 381 LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEPNDNFRLP-----EDPDTPIIM 455 (597)
T ss_pred cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEeeCCcccCC-----CCCCCCEEE
Confidence 3578888743 346655553 3777899998 999999988643 3333210 113579998
Q ss_pred E
Q 018935 330 V 330 (348)
Q Consensus 330 I 330 (348)
|
T Consensus 456 I 456 (597)
T TIGR01931 456 I 456 (597)
T ss_pred E
Confidence 8
No 386
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=22.74 E-value=6.6e+02 Score=23.80 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHhCCcEEEEcCcchhhhhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE----
Q 018935 63 MTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI---- 138 (348)
Q Consensus 63 vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv---- 138 (348)
+..|++.|+|++=+..+|......-.-+ ..++.+|.-+. +.|+.+++.... .||+.+
T Consensus 74 ~dlA~~~~AdGVHlGq~D~~~~~ar~~~---------------~~~~iIG~S~h--~~eea~~A~~~g--~DYv~~Gpif 134 (211)
T COG0352 74 VDLALAVGADGVHLGQDDMPLAEARELL---------------GPGLIIGLSTH--DLEEALEAEELG--ADYVGLGPIF 134 (211)
T ss_pred HHHHHhCCCCEEEcCCcccchHHHHHhc---------------CCCCEEEeecC--CHHHHHHHHhcC--CCEEEECCcC
Q ss_pred ---eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE------ecCCHHHHHHHHHhh
Q 018935 139 ---DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL------KVEDVKAVLALKEYF 203 (348)
Q Consensus 139 ---~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl------~~~d~~~v~~l~~~~ 203 (348)
.-.|-..+=+|-+-...+...--++|.-.- ..+-+-++++.|+|||-+ ..+....++++++.+
T Consensus 135 pT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi--~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~ 206 (211)
T COG0352 135 PTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI--NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNAL 206 (211)
T ss_pred CCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC--CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHH
No 387
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=22.74 E-value=66 Score=33.04 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=39.9
Q ss_pred CCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEEEEE
Q 018935 268 IASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKV 334 (348)
Q Consensus 268 va~RPFRVNAGaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIeAe~ 334 (348)
+|+-|||.- -.-||-...|.=-|++||.|+|-..-|+. -.|=..|||+.|-.-+
T Consensus 232 IAtPPp~~~-------~~PpG~mSSyi~sLKpGDKvtisGPfGEf------FaKdtdaemvFigGGA 285 (410)
T COG2871 232 IATPPPRNP-------DAPPGQMSSYIWSLKPGDKVTISGPFGEF------FAKDTDAEMVFIGGGA 285 (410)
T ss_pred eccCCCCCC-------CCCccceeeeEEeecCCCeEEEeccchhh------hhccCCCceEEEecCc
Confidence 344477763 12366667777789999999999999987 5688889999885433
No 388
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=22.57 E-value=1.1e+02 Score=28.42 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=31.7
Q ss_pred CeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHH
Q 018935 143 WQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKA 195 (348)
Q Consensus 143 W~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~ 195 (348)
|..+. ..+++.++..+-++++ .+++.++++ ..++.|+|||+ +|.|+.
T Consensus 194 ~~~~~-~~~v~~~~~~g~~v~~WTvn~~~~~~---~l~~~GVdgIi--TD~p~~ 241 (249)
T PRK09454 194 HKLLD-EARVAALKAAGLRILVYTVNDPARAR---ELLRWGVDCIC--TDRIDL 241 (249)
T ss_pred cccCC-HHHHHHHHHCCCEEEEEeCCCHHHHH---HHHHcCCCEEE--eCChHh
Confidence 44443 4677777777777664 567777776 45778999987 555553
No 389
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.45 E-value=5.9e+02 Score=23.11 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=24.9
Q ss_pred CCHHH-HHHHHHHhhcccCeEEEecC----CHHHHHHHHHhhc
Q 018935 167 KTPSE-AQIFLEALEQGLGGIVLKVE----DVKAVLALKEYFD 204 (348)
Q Consensus 167 ~~~~e-A~~al~~LE~G~DGVvl~~~----d~~~v~~l~~~~~ 204 (348)
.+.++ .+.+-.+.|.|+|.|-|... .|.++.++-..+.
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALR 185 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHH
Confidence 34444 44556678899999988643 4777777655553
No 390
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=22.44 E-value=4.5e+02 Score=28.40 Aligned_cols=129 Identities=12% Similarity=0.173 Sum_probs=74.6
Q ss_pred chhHHHHHHHhCCcEEEEcCcchhhhhhccce--eeeeeeee-c-CCccccCCCCeeEEEEEecChhhhhhhccccCCCC
Q 018935 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTI--ALLDPLFI-K-EGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~~~~~e~~~~l~~i--~~i~~l~~-~-~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~ 134 (348)
+.+++..|+.||+|+++++-||. .+..|.+. ++++..-. . +-+.-.++||... +.+ ...
T Consensus 76 ~~km~~nAlnsgAd~~m~D~EDa-~aPtwkn~i~gq~nl~~al~~~i~~~~~~gk~y~----l~~------------~~~ 138 (511)
T cd00727 76 DRKMVINALNSGAKVFMADFEDA-NAPTWENQVEGQINLRDAVRGTISFTSPEGKEYK----LND------------TPA 138 (511)
T ss_pred CHHHHHHHhcCCCCEEEeCcccC-CCCChHHHHHHHHHHHHHhcCCCCccCCCCceee----eCC------------CCc
Confidence 48899999999999999987763 33344333 22221111 1 1111223455321 111 122
Q ss_pred eEEEeCCCCeee---------------------ehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhh---------cc
Q 018935 135 NIVIDLPDWQVI---------------------PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALE---------QG 182 (348)
Q Consensus 135 ~vvv~~~DW~iI---------------------PlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE---------~G 182 (348)
.++|.-++|..- =..|+.+.+... ..=++-.+.+++|++..-.+|. .|
T Consensus 139 ~l~VRprG~hl~e~hv~~dg~~~~~~l~Dfgl~~fhd~~~l~~~g~gpyi~LPKves~~Ev~~~~~vf~~~E~~lGlp~G 218 (511)
T cd00727 139 TLIVRPRGWHLPEKHVLVDGEPVSGSLFDFGLYFFHNAKALLARGSGPYFYLPKMESHLEARLWNDVFVFAQDYLGLPRG 218 (511)
T ss_pred EEEEecCCCCCCcchhhcCCccCcchhhhHHHHHHhhHHHHHhcCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 345555554422 225655443332 2345667899999997766654 26
Q ss_pred cCeEEEecCCHHHHHHHHHhhc
Q 018935 183 LGGIVLKVEDVKAVLALKEYFD 204 (348)
Q Consensus 183 ~DGVvl~~~d~~~v~~l~~~~~ 204 (348)
.=++..--+++..+.++.+++.
T Consensus 219 tIki~vLIET~~A~~nm~EIa~ 240 (511)
T cd00727 219 TIKATVLIETLPAAFEMDEILY 240 (511)
T ss_pred ceEEEEEecCHHHHHHHHHHHH
Confidence 6667777799999999998884
No 391
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=22.16 E-value=5.1e+02 Score=22.22 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=39.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..|.++++..-...-.+ .++..++. ....++.... ..+......+++.|+|+.+.+|-+..++.+.
T Consensus 46 ~~dlvild~~l~~~~g~-~~~~~l~~~~~~~~~pvi~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~ 115 (229)
T PRK10161 46 WPDLILLDWMLPGGSGI-QFIKHLKRESMTRDIPVVMLTA-RGEEEDRVRGLETGADDYITKPFSPKELVAR 115 (229)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhccccCCCCEEEEEC-CCCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Confidence 45777775442222112 22233322 2334555443 3456677889999999999999998876543
No 392
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=21.89 E-value=92 Score=32.09 Aligned_cols=59 Identities=29% Similarity=0.309 Sum_probs=40.4
Q ss_pred EeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEeeccc
Q 018935 248 VGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRP 326 (348)
Q Consensus 248 VGS~S~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~aG~eVLvVd~~G~tR~~~VGRvKIE~RP 326 (348)
+||.-+|+.|-.-+-.+- -.||||+|- |.+|---||---+-|+-+..-+-+| .|||+||
T Consensus 258 ~~NvTRFLmLar~p~ip~---t~rl~ktsi--vf~~~~gp~vLfkvl~vfa~r~inl---------------tkIesRP 316 (377)
T KOG2797|consen 258 LGNVTRFLMLAREPIIPD---TDRLFKTSI--VFFREKGPGVLFKVLSVFAFRSINL---------------TKIESRP 316 (377)
T ss_pred cCCeeEEEEEeccCCCCC---CCccceeeE--EEEeecCCchHHHHHHHHHhhhcee---------------eeeeccc
Confidence 688889998865554332 689999985 5556666665555566555544443 5999999
No 393
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.82 E-value=57 Score=32.05 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=27.2
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 018935 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (348)
Q Consensus 148 lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~~v 196 (348)
++.|+.++ +-..-|=|...+++||. .++|.|+||||+.+ .||-..
T Consensus 167 l~~i~~~~-~vPvIvDAGiG~pSdaa---~AMElG~daVLvNTAiA~A~dPv~M 216 (247)
T PF05690_consen 167 LRIIIERA-DVPVIVDAGIGTPSDAA---QAMELGADAVLVNTAIAKAKDPVAM 216 (247)
T ss_dssp HHHHHHHG-SSSBEEES---SHHHHH---HHHHTT-SEEEESHHHHTSSSHHHH
T ss_pred HHHHHHhc-CCcEEEeCCCCCHHHHH---HHHHcCCceeehhhHHhccCCHHHH
Confidence 55666665 33334445667888765 56899999999976 466443
No 394
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=21.72 E-value=1.5e+02 Score=30.03 Aligned_cols=54 Identities=7% Similarity=0.111 Sum_probs=36.0
Q ss_pred CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 018935 142 DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (348)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~ 201 (348)
+++.+. +.++++++..+-+|.+ .|++.++++.++ +.|||||+ ||.|+.+.++..
T Consensus 207 ~~~~lt-~~~v~~~~~~Gl~V~vWTVN~~~~~~~l~---~~GVdgIi--TD~P~~l~~l~~ 261 (351)
T cd08608 207 RYTQAS-AQEIRDYSASNLSVNLYTVNEPWLYSLLW---CSGVPSVT--SDASHVLRKVPF 261 (351)
T ss_pred chhhcC-HHHHHHHHHCCCEEEEEecCCHHHHHHHH---HCCCCEEE--ECCHHHHHHhhh
Confidence 344444 4567776666555444 577777776554 67999987 888987776544
No 395
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.58 E-value=1.5e+02 Score=24.32 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=18.1
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEee
Q 018935 296 ELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (348)
Q Consensus 296 EL~aG~eVLvVd~~G~tR~~~VGRvKIE 323 (348)
-|+.||.|.+.+..|+. ..++++-
T Consensus 43 gi~~Gd~V~v~s~~g~i----~~~a~~~ 66 (121)
T cd02794 43 GIKDGDRVLVFNDRGKV----IRPVKVT 66 (121)
T ss_pred CCCCCCEEEEEcCCceE----EEEEEEC
Confidence 46789999999999854 3466664
No 396
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.53 E-value=1.3e+02 Score=26.49 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=27.2
Q ss_pred HHHHHHHhhcccCeEEEecC-CHHHHHHHHHhhcc
Q 018935 172 AQIFLEALEQGLGGIVLKVE-DVKAVLALKEYFDG 205 (348)
Q Consensus 172 A~~al~~LE~G~DGVvl~~~-d~~~v~~l~~~~~~ 205 (348)
-+.+.-.||||+==|.-+|+ +++++.+|+++++.
T Consensus 40 ~e~~VH~LEHGaV~i~Y~p~~~~~~v~~L~~l~~~ 74 (130)
T PF11303_consen 40 PERAVHNLEHGAVWITYDPCLPPDQVAKLKALAKS 74 (130)
T ss_pred hHHHHHhhhcCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 34556679999888888888 88899999988854
No 397
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=21.50 E-value=94 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCCcEEEEEe-Cch--hHHHHHHHhCCcEEEEcC
Q 018935 48 SKPKRVWIWT-ESK--QVMTAAVERGWNTFVFLS 78 (348)
Q Consensus 48 ~~~K~vWiw~-~~K--~~vT~ALEsG~~~~v~~~ 78 (348)
+..+.+.+|+ .+. +.+..+++.|+|+|+.+.
T Consensus 220 ~~g~~v~~wtvn~~~~~~~~~l~~~gvdgIiTD~ 253 (256)
T PF03009_consen 220 KAGLKVYVWTVNDPDVEDMKRLLDLGVDGIITDF 253 (256)
T ss_dssp HTT-EEEEBSB-SHSHHHHHHHHHHT-SEEEES-
T ss_pred HCCCEEEEEecCCcHHHHHHHHHhCCCCEEEEcC
Confidence 5668899999 456 799999999999999764
No 398
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.42 E-value=80 Score=27.13 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=17.2
Q ss_pred chhHHHHHHHhCCcEEEEc
Q 018935 59 SKQVMTAAVERGWNTFVFL 77 (348)
Q Consensus 59 ~K~~vT~ALEsG~~~~v~~ 77 (348)
+...+..|++.|+|+|++-
T Consensus 41 ~~~~il~Af~~GADGV~V~ 59 (124)
T PF02662_consen 41 DPEFILRAFEKGADGVLVA 59 (124)
T ss_pred CHHHHHHHHHcCCCEEEEe
Confidence 5789999999999999994
No 399
>PRK11173 two-component response regulator; Provisional
Probab=21.32 E-value=5.4e+02 Score=22.40 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=29.2
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH-HHHhh
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA-LKEYF 203 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~-l~~~~ 203 (348)
..++......+ .......++.|+|+.+.+|-++.++.. ++.++
T Consensus 75 ~pii~lt~~~~-~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l 118 (237)
T PRK11173 75 VALMFLTGRDN-EVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 (237)
T ss_pred CCEEEEECCCC-HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 34555544433 344567899999999999999988753 34444
No 400
>PRK05967 cystathionine beta-lyase; Provisional
Probab=21.31 E-value=54 Score=33.29 Aligned_cols=115 Identities=11% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHHHHHhCCcEEEEcCcchhhhhhccceeeeee---eee-cCC---------ccccCCCCeeEEEEEecChhhhhhhccc
Q 018935 63 MTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEG---------EVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (348)
Q Consensus 63 vT~ALEsG~~~~v~~~~~~e~~~~l~~i~~i~~---l~~-~~g---------~~~~~~gk~v~~~~~v~~~ed~e~~~~~ 129 (348)
.-++||.|.+++++.+.......-+..+ +.| +++ +.+ ..++.-|..+ .++...+.++++.+..
T Consensus 72 ~la~le~~~~~v~~sSG~aAi~~~l~al--l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v-~~vd~~~~e~l~~al~- 147 (395)
T PRK05967 72 AIDALEGSAGTILVPSGLAAVTVPFLGF--LSPGDHALIVDSVYYPTRHFCDTMLKRLGVEV-EYYDPEIGAGIAKLMR- 147 (395)
T ss_pred HHHHHhCCCCEEEECcHHHHHHHHHHHh--cCCCCEEEEccCCcHHHHHHHHHHHHhcCeEE-EEeCCCCHHHHHHhcC-
Confidence 3457898999999888543332222222 222 222 222 1123334433 2223222233333321
Q ss_pred cCCCCeEEEeCCC---CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 018935 130 DGQAENIVIDLPD---WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (348)
Q Consensus 130 ~~~~~~vvv~~~D---W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (348)
.+.+-|+++.-. +++.|++.|.+.+... .++..+.+.-..-..+.-|+.|+|
T Consensus 148 -~~TklV~lesPsNP~l~v~dl~~I~~la~~~--g~~vvVD~t~a~p~~~~pl~~GaD 202 (395)
T PRK05967 148 -PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH--GAIVMMDNTWATPLYFRPLDFGVD 202 (395)
T ss_pred -cCceEEEEECCCCCCCcHHHHHHHHHHHHHh--CCEEEEECCccCceecChhHcCCC
Confidence 245667777643 5888999888876543 356666766666777889999997
No 401
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=21.18 E-value=89 Score=29.96 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=24.7
Q ss_pred CCCcEEEEEe-Cc---------hhHHHHHHHh-CCcEEEEc
Q 018935 48 SKPKRVWIWT-ES---------KQVMTAAVER-GWNTFVFL 77 (348)
Q Consensus 48 ~~~K~vWiw~-~~---------K~~vT~ALEs-G~~~~v~~ 77 (348)
...++|++|| .+ .+.+...++. |+|+|+.+
T Consensus 254 ~~Gl~v~~WTvn~~~~~~~~~~~~~~~~l~~~~GVdgIiTD 294 (296)
T cd08559 254 KAGLLVHPYTFRNENLFLAPDFKQDMDALYNAAGVDGVFTD 294 (296)
T ss_pred HcCCEEEEEEecCcccccccccccCHHHHHHHhCCCEEEcC
Confidence 3567899999 45 7889999998 99999864
No 402
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=20.91 E-value=1.2e+02 Score=29.23 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=28.8
Q ss_pred CeeeehhhhhhcccCC-CceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 018935 143 WQVIPAENIVASFQGS-GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (348)
Q Consensus 143 W~iIPlENliA~~q~~-~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (348)
++.+- ..+|++++.. +-+|.+ .|++.++++ ..++.|||||+ ||.|+
T Consensus 214 ~~l~t-~~~V~~~h~~~gl~V~~WTVN~~~~~~---~l~~~GVDgIi--TD~P~ 261 (263)
T cd08580 214 ATLWT-PAAVDCFRRNSKVKIVLFGINTADDYR---LAKCLGADAVM--VDSPA 261 (263)
T ss_pred cccCC-HHHHHHHHhcCCcEEEEEEeCCHHHHH---HHHHcCCCEEE--eCCcc
Confidence 34443 3457777665 555444 567777766 56788999998 44443
No 403
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=20.72 E-value=2.1e+02 Score=25.30 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEeeccceeEEE
Q 018935 278 GPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (348)
Q Consensus 278 GaVHaYv~~-pgg-kT~YLSE-L~aG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLIe 331 (348)
|-+.=++.. ++| -|.||.+ ++.||.|.+....|+.-... .-..+|+++|=
T Consensus 52 ~~~~~~i~~~~~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~----~~~~~~~v~ia 104 (222)
T cd06194 52 NELEFHIRRKPNGAFSGWLGEEARPGHALRLQGPFGQAFYRP----EYGEGPLLLVG 104 (222)
T ss_pred CEEEEEEEeccCCccchHHHhccCCCCEEEEecCcCCeeccC----CCCCCCEEEEe
Confidence 344445544 434 5899988 79999999998888753221 12347887763
No 404
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.55 E-value=3.5e+02 Score=26.05 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=49.0
Q ss_pred eEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHh-hcccCeEEE
Q 018935 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVL 188 (348)
Q Consensus 111 v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~L-E~G~DGVvl 188 (348)
+..+..+.+.++++.+... ..+.+=|-..|=+.+||=.-+|+. +.+.=|=+...+.+|.+.+++++ +.|.+-++|
T Consensus 70 i~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~n~~lL~~~A~t-gkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~l 145 (241)
T PF03102_consen 70 IDFFSTPFDEESVDFLEEL--GVPAYKIASGDLTNLPLLEYIAKT-GKPVILSTGMSTLEEIERAVEVLREAGNEDLVL 145 (241)
T ss_dssp -EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-HHHHHHHHTT--S-EEEE-TT--HHHHHHHHHHHHHHCT--EEE
T ss_pred CEEEECCCCHHHHHHHHHc--CCCEEEeccccccCHHHHHHHHHh-CCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4467777888888877443 467777878899999999999973 33333445678999999999999 888888776
No 405
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=20.54 E-value=1.8e+02 Score=28.84 Aligned_cols=48 Identities=6% Similarity=0.122 Sum_probs=31.4
Q ss_pred hhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 018935 151 IVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (348)
Q Consensus 151 liA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l~~~~ 203 (348)
++++++..+-++++ .|++.++++. .++.|+|||+ |++|+.+.++.+-.
T Consensus 237 ~v~~~~~~G~~v~vWTVNd~~~~~~---l~~~GVDgIi--TD~P~~l~~~~~~~ 285 (315)
T cd08609 237 EIKELRKDNVSVNLWVVNEPWLFSL---LWCSGVSSVT--TNACQLLKDMSKPI 285 (315)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHH---HHhcCCCEEE--cCCHHHHHHhhhhh
Confidence 45555555555554 4566666655 4568999988 88888776655443
No 406
>PRK10651 transcriptional regulator NarL; Provisional
Probab=20.53 E-value=3.9e+02 Score=22.15 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=26.9
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 018935 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (348)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v~~l 199 (348)
..++.... ..+.......++.|+++++.+|-+..++.+.
T Consensus 81 ~~vi~l~~-~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~ 119 (216)
T PRK10651 81 GRIVVFSV-SNHEEDVVTALKRGADGYLLKDMEPEDLLKA 119 (216)
T ss_pred CcEEEEeC-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 34554443 3344555688899999999999988776543
No 407
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=20.46 E-value=4.1e+02 Score=24.93 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=42.9
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHH---HH-HHHHhhcccCeEEEecC
Q 018935 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEA---QI-FLEALEQGLGGIVLKVE 191 (348)
Q Consensus 116 ~v~~~ed~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA---~~-al~~LE~G~DGVvl~~~ 191 (348)
...+++.++.++..... .-++..++..+..++|.+.......+..++....+..+. -. +-.+---|+|||++...
T Consensus 46 ~~v~~~~l~~l~~~~~~-qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~afG~~~vil~~~ 124 (237)
T TIGR00186 46 QLVDRQKLDQLTKGGNH-QGIAAKVKPILYKDLNDLYKTAKSKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKR 124 (237)
T ss_pred EEeCHHHHHHHhCCCCC-CeEEEEEecCCCCCHHHHHHhhhccCCCEEEEEcCCCCCccHHHHHHHHHHcCCCEEEECCC
Confidence 44578888887764433 334444555455567777654333333455555544443 22 23334569999998876
Q ss_pred C
Q 018935 192 D 192 (348)
Q Consensus 192 d 192 (348)
.
T Consensus 125 ~ 125 (237)
T TIGR00186 125 R 125 (237)
T ss_pred C
Confidence 4
No 408
>PRK02268 hypothetical protein; Provisional
Probab=20.40 E-value=1e+02 Score=27.77 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=36.1
Q ss_pred eecCCceeEEEecCCceeeeeeccCCCeEEEEc-------CCCCeeEEeeeeEE
Q 018935 275 VNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVD-------QKGRQRTAVVGRVK 321 (348)
Q Consensus 275 VNAGaVHaYv~~pggkT~YLSEL~aG~eVLvVd-------~~G~tR~~~VGRvK 321 (348)
|-.|--|-+..++.||..+|.-+++||.|+... .++-..-+-+|+|.
T Consensus 14 v~~g~~~gf~qv~hgK~apl~RmkpGD~ivyYsp~~~~~~~~~~qaftAig~V~ 67 (141)
T PRK02268 14 VRRGVEGGFMQVCHGKAAPLRRMKPGDWIIYYSPKTTFGGKDKLQAFTAIGKVK 67 (141)
T ss_pred HHHHHhCCEEEeCCCccchhhcCCCCCEEEEEeceEecCCCcccceEEEEEEEc
Confidence 556667788899999999999999999999865 23334455677665
No 409
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=20.07 E-value=3.5e+02 Score=23.58 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=37.5
Q ss_pred CCCeEEEeCCCCeeeehh----hhhhcccCC---CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 018935 132 QAENIVIDLPDWQVIPAE----NIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (348)
Q Consensus 132 ~~~~vvv~~~DW~iIPlE----NliA~~q~~---~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~~v 196 (348)
..+++-+...|...+|.. .+++++... ...+--.++|+++ .+-.+.+.|+|||.++-...++.
T Consensus 25 G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~--~~~~~~~~g~dgv~vh~~~~~~~ 94 (211)
T cd00429 25 GADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPER--YIEAFAKAGADIITFHAEATDHL 94 (211)
T ss_pred CCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHH--HHHHHHHcCCCEEEECccchhhH
Confidence 467888877777665544 456555432 1123344556533 34455699999998876544333
No 410
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.02 E-value=4.5e+02 Score=24.61 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=54.0
Q ss_pred eeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCee---eehhhhhhcc-cCCCceEE--EEcCC
Q 018935 95 PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---IPAENIVASF-QGSGKTVF--AISKT 168 (348)
Q Consensus 95 ~l~~~~g~~~~~~gk~v~~~~~v~~~ed~e~~~~~~~~~~~vvv~~~DW~i---IPlENliA~~-q~~~~~l~--a~v~~ 168 (348)
.|.+.+|..+...... ......+|.++-+..... .++.+.+...|=.. =+--.++.++ +.....|. .-+++
T Consensus 9 ~iD~~~G~~V~~~~~~--~~~~~~dp~~~a~~~~~~-G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s 85 (254)
T TIGR00735 9 CLDVRDGRVVKGVQFL--NLRDAGDPVELAQRYDEE-GADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKS 85 (254)
T ss_pred EEEeECCEEEEeEeec--CceECCCHHHHHHHHHHc-CCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCC
Confidence 3556677655432111 012234666655555443 45666664443210 0111122222 11223344 48999
Q ss_pred HHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 018935 169 PSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (348)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~~---d~~~v~~l~~~~ 203 (348)
.++++.++. .|+|+|++.+. ||+.++++.+.+
T Consensus 86 ~~d~~~~~~---~Ga~~vivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 86 IEDVDKLLR---AGADKVSINTAAVKNPELIYELADRF 120 (254)
T ss_pred HHHHHHHHH---cCCCEEEEChhHhhChHHHHHHHHHc
Confidence 999998876 49999999885 555555554433
Done!