Query 018937
Match_columns 348
No_of_seqs 263 out of 650
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:22:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsf_X RAD23, UV excision repa 98.2 3.6E-07 1.2E-11 81.2 2.3 52 208-267 25-81 (171)
2 2cp8_A NEXT to BRCA1 gene 1 pr 98.0 3.9E-07 1.3E-11 66.4 -0.8 29 316-346 4-32 (54)
3 2dna_A Unnamed protein product 97.7 8.2E-06 2.8E-10 61.9 0.6 29 316-346 14-42 (67)
4 2bwb_A Ubiquitin-like protein 97.5 2.3E-05 7.7E-10 55.2 1.1 27 317-345 3-29 (46)
5 1wr1_B Ubiquitin-like protein 97.3 4.6E-05 1.6E-09 56.2 0.4 29 316-346 12-40 (58)
6 1vej_A Riken cDNA 4931431F19; 97.2 4.1E-05 1.4E-09 59.2 -0.4 29 316-346 24-52 (74)
7 2knz_A Ubiquilin-4; cytoplasm, 97.0 0.00021 7.3E-09 51.5 1.7 28 316-345 6-33 (53)
8 2dah_A Ubiquilin-3; UBA domain 97.0 4.2E-05 1.4E-09 55.6 -2.1 28 317-346 5-32 (54)
9 2jy5_A Ubiquilin-1; UBA, alter 96.7 0.00021 7.2E-09 51.3 -0.5 29 316-346 7-35 (52)
10 2cwb_A Chimera of immunoglobul 96.4 0.00034 1.2E-08 57.7 -0.9 28 317-346 62-89 (108)
11 2qsf_X RAD23, UV excision repa 95.7 0.0056 1.9E-07 54.3 3.3 38 2-39 26-72 (171)
12 2lnm_A Protein TIC 40, chlorop 95.6 0.018 6.1E-07 42.5 5.1 32 37-68 11-42 (62)
13 2f4m_B UV excision repair prot 95.1 0.02 6.8E-07 42.5 4.0 50 209-264 5-56 (61)
14 1pve_A HHR23B, UV excision rep 95.1 0.01 3.5E-07 45.5 2.5 25 210-234 8-32 (72)
15 1oqy_A HHR23A, UV excision rep 95.0 0.04 1.4E-06 54.2 6.9 72 265-340 270-344 (368)
16 2lnm_A Protein TIC 40, chlorop 94.9 0.024 8.2E-07 41.8 3.9 41 2-50 6-47 (62)
17 2llw_A Heat shock protein STI1 94.8 0.025 8.5E-07 43.1 3.8 36 208-244 22-57 (71)
18 1pve_A HHR23B, UV excision rep 94.5 0.046 1.6E-06 41.9 4.7 41 241-286 18-60 (72)
19 2f4m_B UV excision repair prot 94.1 0.046 1.6E-06 40.5 3.8 38 242-284 17-56 (61)
20 2llw_A Heat shock protein STI1 92.1 0.15 5.3E-06 38.7 4.2 34 37-70 19-52 (71)
21 2llv_A Heat shock protein STI1 90.8 0.028 9.7E-07 42.6 -1.1 44 27-70 12-56 (71)
22 1oqy_A HHR23A, UV excision rep 87.4 0.24 8.1E-06 48.7 2.3 27 209-235 238-264 (368)
23 2llv_A Heat shock protein STI1 82.6 0.5 1.7E-05 35.6 1.7 17 35-51 42-60 (71)
24 1q02_A Sequestosome 1; helical 79.7 0.67 2.3E-05 33.1 1.4 21 317-337 6-26 (52)
25 1z96_A DNA-damage, UBA-domain 72.7 1 3.6E-05 29.3 0.8 19 321-339 4-22 (40)
26 1ify_A HHR23A, UV excision rep 71.4 1.4 4.9E-05 30.6 1.3 22 318-339 5-26 (49)
27 2g3q_A Protein YBL047C; endocy 64.2 1.8 6.2E-05 29.0 0.6 18 322-339 5-22 (43)
28 2ekk_A UBA domain from E3 ubiq 58.5 1.1 3.7E-05 30.8 -1.4 21 320-340 8-28 (47)
29 1vg5_A RSGI RUH-014, rhomboid 56.4 2.5 8.6E-05 32.1 0.2 24 317-340 25-48 (73)
30 1wji_A Tudor domain containing 52.4 4.1 0.00014 29.9 0.8 19 322-340 10-28 (63)
31 2dak_A Ubiquitin carboxyl-term 43.8 3.6 0.00012 29.9 -0.7 20 321-340 9-28 (63)
32 1dv0_A DNA repair protein HHR2 39.7 9.3 0.00032 26.2 0.9 20 323-342 6-25 (47)
33 1wiv_A UBP14, ubiquitin-specif 34.0 8.2 0.00028 29.0 -0.1 20 321-340 29-48 (73)
34 1veg_A NEDD8 ultimate buster-1 33.3 6.6 0.00023 30.5 -0.7 20 321-340 29-48 (83)
35 4ae4_A Ubiquitin-associated pr 29.6 17 0.00059 29.8 1.1 16 321-336 76-91 (118)
36 2dag_A Ubiquitin carboxyl-term 29.3 11 0.00037 28.4 -0.1 18 322-339 10-27 (74)
37 2crn_A Ubash3A protein; compac 29.3 12 0.0004 27.5 0.0 17 324-340 12-28 (64)
38 1whc_A RSGI RUH-027, UBA/UBX 3 28.2 14 0.00047 27.0 0.3 18 323-340 11-28 (64)
39 2cpw_A CBL-interacting protein 26.4 11 0.00039 27.5 -0.5 18 323-340 21-38 (64)
40 2dkl_A Trinucleotide repeat co 25.1 20 0.00068 27.8 0.7 23 318-340 17-40 (85)
41 2dai_A Ubadc1, ubiquitin assoc 23.7 13 0.00043 28.8 -0.7 21 320-340 28-48 (83)
42 1vek_A UBP14, ubiquitin-specif 22.0 14 0.00048 28.5 -0.7 20 321-340 29-48 (84)
No 1
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.22 E-value=3.6e-07 Score=81.23 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=39.4
Q ss_pred HHhcc-CChHHHHHHHHhhCChHHHHHHhh----CChhHHHHhhhChHHHHhhcChHHHHhhcCH
Q 018937 208 LNQML-QNPAVTQMMQSLLSNPQYMNQILG----LNPQLRSMVDSNSQLREMIQNPEFLRQLTNP 267 (348)
Q Consensus 208 m~~mm-~nP~~~~mmq~l~sNP~lm~qmi~----~nP~l~~m~~~nPql~~~mqnP~~l~~m~NP 267 (348)
+..|. ++|.|+++.+.+.+||++++.||+ .||++.+++.+||+ +|+++|.+|
T Consensus 25 l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe--------~Fl~mLnep 81 (171)
T 2qsf_X 25 PGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE--------VFVSMLLEA 81 (171)
T ss_dssp ---CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHH--------HHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHH--------HHHHHHhCc
Confidence 45677 999999999999999999988876 77777777777765 466666554
No 2
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.05 E-value=3.9e-07 Score=66.37 Aligned_cols=29 Identities=10% Similarity=-0.132 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937 316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS 346 (348)
Q Consensus 316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~ 346 (348)
.||++|+.+|++|++|||+| +++|+.+|.
T Consensus 4 ~~ee~~a~~L~~L~eMGF~D--~~~N~~aL~ 32 (54)
T 2cp8_A 4 GSSGQTAALMAHLFEMGFCD--RQLNLRLLK 32 (54)
T ss_dssp SSCTTHHHHHHHHHHHTCCC--HHHHHHHHT
T ss_pred CHHHhhHHHHHHHHHcCCCc--HHHHHHHHH
Confidence 37999999999999999999 788888875
No 3
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.66 E-value=8.2e-06 Score=61.95 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=24.0
Q ss_pred chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937 316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS 346 (348)
Q Consensus 316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~ 346 (348)
.||++|++||+||++|||.|++ +|+.||.
T Consensus 14 ~pe~~y~~ql~qL~~MGF~d~~--an~~AL~ 42 (67)
T 2dna_A 14 APEVRFSKEMECLQAMGFVNYN--ANLQALI 42 (67)
T ss_dssp CHHHHTHHHHHHHHHHTCCCHH--HHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCCcHH--HHHHHHH
Confidence 3899999999999999999954 5666653
No 4
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=97.51 E-value=2.3e-05 Score=55.15 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhhccCCCCCchhhhhcccc
Q 018937 317 LELFFTTILKMLKPNGIPYRSFIASVEHL 345 (348)
Q Consensus 317 ~e~~y~~qL~qL~~mGf~~~~~~~~~~~~ 345 (348)
||++|.++|++|++|||.||+ +++.||
T Consensus 3 p~~~~~~~i~~L~~MGF~d~~--~~~~AL 29 (46)
T 2bwb_A 3 PEERYEHQLRQLNDMGFFDFD--RNVAAL 29 (46)
T ss_dssp HHHHTHHHHHHHHHTTCCCHH--HHHHHH
T ss_pred HhHHHHHHHHHHHHcCCCcHH--HHHHHH
Confidence 899999999999999999865 455554
No 5
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.27 E-value=4.6e-05 Score=56.22 Aligned_cols=29 Identities=21% Similarity=0.079 Sum_probs=23.7
Q ss_pred chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937 316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS 346 (348)
Q Consensus 316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~ 346 (348)
.||++|.++|++|++|||.||+ +++.||.
T Consensus 12 ~pe~~~~~qi~~L~~MGF~d~~--~~~~AL~ 40 (58)
T 1wr1_B 12 DPEERYEHQLRQLNDMGFFDFD--RNVAALR 40 (58)
T ss_dssp SHHHHTHHHHHHHHHHTCCCHH--HHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCCcHH--HHHHHHH
Confidence 3799999999999999999854 5555553
No 6
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.22 E-value=4.1e-05 Score=59.18 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937 316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS 346 (348)
Q Consensus 316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~ 346 (348)
.||++|.++|++|++|||.||+ ++|.||.
T Consensus 24 ~pe~~ye~qi~qL~eMGF~dr~--~~~~AL~ 52 (74)
T 1vej_A 24 FTEGRYQQELEELKALGFANRD--ANLQALV 52 (74)
T ss_dssp GTTTTSHHHHHHHHHHTCCCHH--HHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCCcHH--HHHHHHH
Confidence 4899999999999999998854 5566653
No 7
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=97.02 E-value=0.00021 Score=51.47 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=22.9
Q ss_pred chHHHHHHHHHhhccCCCCCchhhhhcccc
Q 018937 316 LLELFFTTILKMLKPNGIPYRSFIASVEHL 345 (348)
Q Consensus 316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~ 345 (348)
.||++|.++|++|++|||.||+ +++.||
T Consensus 6 ~pe~~~~~~l~~L~~MGF~~~~--~~~~AL 33 (53)
T 2knz_A 6 MPEVRFQQQLEQLNSMGFINRE--ANLQAL 33 (53)
T ss_dssp CTHHHHHHHHHHHHTTTCCCHH--HHHHHH
T ss_pred ChhhHHHHHHHHHHHcCCCCHH--HHHHHH
Confidence 3799999999999999998854 455554
No 8
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.01 E-value=4.2e-05 Score=55.58 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937 317 LELFFTTILKMLKPNGIPYRSFIASVEHLS 346 (348)
Q Consensus 317 ~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~ 346 (348)
||++|.++|++|++|||.|++ +|+.||.
T Consensus 5 p~~~~~~~l~~L~~MGF~d~~--~n~~AL~ 32 (54)
T 2dah_A 5 SSGHFQVQLEQLRSMGFLNRE--ANLQALI 32 (54)
T ss_dssp CCCSSHHHHHHHHHHTCCCHH--HHHHHHH
T ss_pred hhhhHHHHHHHHHHcCCCcHH--HHHHHHH
Confidence 678999999999999999954 5555553
No 9
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.68 E-value=0.00021 Score=51.32 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=23.3
Q ss_pred chHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937 316 LLELFFTTILKMLKPNGIPYRSFIASVEHLS 346 (348)
Q Consensus 316 ~~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~ 346 (348)
.||+.|.++|++|++|||.||+ +++.||+
T Consensus 7 ~p~~~~~~~l~~L~~MGF~~~~--~~~~AL~ 35 (52)
T 2jy5_A 7 NPEVRFQQQLEQLSAMGFLNRE--ANLQALI 35 (52)
T ss_dssp STTTTTHHHHHHHHHTTCCCHH--HHHHHHH
T ss_pred CchhHHHHHHHHHHHcCCCCHH--HHHHHHH
Confidence 3799999999999999998854 5555553
No 10
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=96.44 E-value=0.00034 Score=57.72 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhhccCCCCCchhhhhccccc
Q 018937 317 LELFFTTILKMLKPNGIPYRSFIASVEHLS 346 (348)
Q Consensus 317 ~e~~y~~qL~qL~~mGf~~~~~~~~~~~~~ 346 (348)
||++|.+||++|+||||.|| +++|.||+
T Consensus 62 ~e~~~~~qL~qL~eMGF~d~--~~ni~AL~ 89 (108)
T 2cwb_A 62 EGSQWQPQLQQLRDMGIQDD--ELSLRALQ 89 (108)
T ss_dssp -CCTTHHHHHHHHTTTCCCH--HHHHHHHH
T ss_pred cccchHHHHHHHHHcCCCCH--HHHHHHHH
Confidence 68899999999999999884 46666664
No 11
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=95.71 E-value=0.0056 Score=54.28 Aligned_cols=38 Identities=37% Similarity=0.492 Sum_probs=28.4
Q ss_pred hhhh-CCHHHHHhh----cCHHHHHHHHh----cCHHHHHHHhhChh
Q 018937 2 REIM-NMPVVQNLM----NNPEIMRNLIM----NNPQMREIIDRNPE 39 (348)
Q Consensus 2 ~~mm-~nP~~Q~lm----~NPe~m~~~i~----~nP~mq~l~~~nPe 39 (348)
..|+ ++|.|++|. +||+++..+|+ +||++.++|.+|||
T Consensus 26 ~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe 72 (171)
T 2qsf_X 26 GSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 72 (171)
T ss_dssp --CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHH
T ss_pred HHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHH
Confidence 3566 889887653 88988888887 78888888877777
No 12
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=95.59 E-value=0.018 Score=42.48 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=14.2
Q ss_pred ChhhhhccCChHHHHHHHHHhcCHHHHHHHHh
Q 018937 37 NPELAHILNDPSTLRQTLEAARNPELMREMMR 68 (348)
Q Consensus 37 nPel~~~ln~P~~lrq~me~~~NP~~~qEmmr 68 (348)
+||+..+|+||+++..+-++.+||+.+++.+.
T Consensus 11 dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~ 42 (62)
T 2lnm_A 11 NPDVAMAFQNPRVQAALMECSENPMNIMKYQN 42 (62)
T ss_dssp SHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTT
T ss_pred ChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHh
Confidence 44444444444444444444444444444443
No 13
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=95.11 E-value=0.02 Score=42.49 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=31.4
Q ss_pred HhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHHhhhChHHHHhh-cChH-HHHhh
Q 018937 209 NQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-QNPE-FLRQL 264 (348)
Q Consensus 209 ~~mm~nP~~~~mmq~l~sNP~lm~qmi~~nP~l~~m~~~nPql~~~m-qnP~-~l~~m 264 (348)
.-+.++|.++++-+.+.+||+++..++ +++-+.||++.+++ +||+ |++++
T Consensus 5 ~~Lr~~Pqf~~lR~~vq~NP~~L~~lL------qql~~~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 5 EFLRNQPQFQQMRQIIQQNPSLLPALL------QQIGRENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp GGGTTCHHHHHHHHHHHHCGGGHHHHH------HHHHHHCHHHHHHHHHSHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHHCHHHHHHHH------HHHHhHCHHHHHHHHHCHHHHHHHH
Confidence 456778888888888888888776655 33445555555544 3554 55544
No 14
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=95.11 E-value=0.01 Score=45.46 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=12.5
Q ss_pred hccCChHHHHHHHHhhCChHHHHHH
Q 018937 210 QMLQNPAVTQMMQSLLSNPQYMNQI 234 (348)
Q Consensus 210 ~mm~nP~~~~mmq~l~sNP~lm~qm 234 (348)
-+.++|.++++-+.+.+||+++..+
T Consensus 8 ~Lr~~Pqf~qlR~~vqqNP~lL~~l 32 (72)
T 1pve_A 8 FLRNQPQFQQMRQIIQQNPSLLPAL 32 (72)
T ss_dssp GGTTCTTTTTHHHHHTTCGGGHHHH
T ss_pred HHHcChHHHHHHHHHHHCHHHHHHH
Confidence 3445555555555555555554433
No 15
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=94.97 E-value=0.04 Score=54.17 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHHHHHHHHhhcccCCCCCCCC-CCCCCC-CCCCCCCcchhhhhc-hHHHHHHHHHhhccCCCCCchhhh
Q 018937 265 TNPETMQQMVTLQQFLLTQLGRAQSTQQPGQ-TGGGTG-IGFIHPYCFSLFFLL-LELFFTTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 265 ~NP~~mqammqiqqgm~~~l~~~~~~~~~~~-~~~~~g-~~~~~~~~~s~~~~~-~e~~y~~qL~qL~~mGf~~~~~~~ 340 (348)
+||+.++.+.+-+..+...|+..+.+-+.+. .++..| .....+.. ... .+ +|+. +-+++|.+|||.-+..+.
T Consensus 270 ~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~i-~~t~ee~--eaI~rL~~mGF~~~~a~~ 344 (368)
T 1oqy_A 270 ENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM-NYI-QVTPQEK--EAIERLKALGFPESLVIQ 344 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTC-SSC-CCCTTTH--HHHHHHHHHTCCSHHHHH
T ss_pred hCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCcc-ccc-cCCCcCH--HHHHHHHHcCCCHHHHHH
Confidence 6999999889999998887754322111111 111111 11111110 000 12 3332 568999999999766654
No 16
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=94.90 E-value=0.024 Score=41.80 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=24.1
Q ss_pred hhhhCCHHHHHhhcCHHHHHHHHhcCHHHHHHHhhChh-hhhccCChHHH
Q 018937 2 REIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPE-LAHILNDPSTL 50 (348)
Q Consensus 2 ~~mm~nP~~Q~lm~NPe~m~~~i~~nP~mq~l~~~nPe-l~~~ln~P~~l 50 (348)
..+++||.++.+|+||+++.-+- . +.+||. +.++++||+.+
T Consensus 6 ~kl~~dPe~~~~m~dP~~~~~lq-~-------i~~NP~~~~~~~~dP~v~ 47 (62)
T 2lnm_A 6 SKIMENPDVAMAFQNPRVQAALM-E-------CSENPMNIMKYQNDKEVM 47 (62)
T ss_dssp HHHTTSHHHHHHTTSHHHHHHHH-H-------HTTCGGGHHHHTTCHHHH
T ss_pred HHHHcChHHHHHcCCHHHHHHHH-H-------HHHCHHHHHHHHhChHHH
Confidence 45677888888888887665432 1 334554 44455555543
No 17
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.025 Score=43.12 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=20.5
Q ss_pred HHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHH
Q 018937 208 LNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSM 244 (348)
Q Consensus 208 m~~mm~nP~~~~mmq~l~sNP~lm~qmi~~nP~l~~m 244 (348)
+..+|+||.|+++++.+++||+.+...+ +||.++.+
T Consensus 22 i~~im~DP~~~~~lq~~~~NP~~~~k~~-~nP~v~~~ 57 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQAQQNPAALQEHM-KNPEVFKK 57 (71)
T ss_dssp HHHHHTCTHHHHHHHHHHHCHHHHHHHH-HSHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHCHHHHHHHH-hCHHHHHH
Confidence 3445566666666666666666665554 25555443
No 18
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=94.47 E-value=0.046 Score=41.86 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=26.8
Q ss_pred HHHHhhhChHHHHhhcChHHHHh--hcCHHHHHHHHHHHHHHHHhhcc
Q 018937 241 LRSMVDSNSQLREMIQNPEFLRQ--LTNPETMQQMVTLQQFLLTQLGR 286 (348)
Q Consensus 241 l~~m~~~nPql~~~mqnP~~l~~--m~NP~~mqammqiqqgm~~~l~~ 286 (348)
+|+++++||++.+ .++.+ -+||+.++.+.+-++.+...++.
T Consensus 18 lR~~vqqNP~lL~-----~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e 60 (72)
T 1pve_A 18 MRQIIQQNPSLLP-----ALLQQIGRENPQLLQQISQHQEHFIQMLNE 60 (72)
T ss_dssp HHHHHTTCGGGHH-----HHHHHHHTTCHHHHHHHHTTHHHHHHHHHS
T ss_pred HHHHHHHCHHHHH-----HHHHHHHhHCHHHHHHHHHCHHHHHHHHcC
Confidence 4555566666653 34444 36888888888888888776643
No 19
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=94.08 E-value=0.046 Score=40.51 Aligned_cols=38 Identities=29% Similarity=0.544 Sum_probs=24.7
Q ss_pred HHHhhhChHHHHhhcChHHHHhh--cCHHHHHHHHHHHHHHHHhh
Q 018937 242 RSMVDSNSQLREMIQNPEFLRQL--TNPETMQQMVTLQQFLLTQL 284 (348)
Q Consensus 242 ~~m~~~nPql~~~mqnP~~l~~m--~NP~~mqammqiqqgm~~~l 284 (348)
|+++++||++.+ .++.++ +||+.++.+.+-++.+...+
T Consensus 17 R~~vq~NP~~L~-----~lLqql~~~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 17 RQIIQQNPSLLP-----ALLQQIGRENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HHHHHHCGGGHH-----HHHHHHHHHCHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHCHHHHH-----HHHHHHHhHCHHHHHHHHHCHHHHHHHH
Confidence 445556666653 344443 68888888888888777655
No 20
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=92.08 E-value=0.15 Score=38.68 Aligned_cols=34 Identities=35% Similarity=0.603 Sum_probs=17.6
Q ss_pred ChhhhhccCChHHHHHHHHHhcCHHHHHHHHhhh
Q 018937 37 NPELAHILNDPSTLRQTLEAARNPELMREMMRNT 70 (348)
Q Consensus 37 nPel~~~ln~P~~lrq~me~~~NP~~~qEmmr~~ 70 (348)
.||+..+|+||+.+.-+-++.+||+.+++.+.+.
T Consensus 19 dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP 52 (71)
T 2llw_A 19 DPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNP 52 (71)
T ss_dssp SHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSH
T ss_pred CHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCH
Confidence 4444455555554444444555665555555544
No 21
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=90.81 E-value=0.028 Score=42.57 Aligned_cols=44 Identities=18% Similarity=0.544 Sum_probs=34.1
Q ss_pred CHHHHHHHhhChhhhhccCChHHHHHHHHHhcCHHHHHH-HHhhh
Q 018937 27 NPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMRE-MMRNT 70 (348)
Q Consensus 27 nP~mq~l~~~nPel~~~ln~P~~lrq~me~~~NP~~~qE-mmr~~ 70 (348)
.|.+-+.+..||+++.++.||+++..+-++.+||..+++ .+.+.
T Consensus 12 ~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dP 56 (71)
T 2llv_A 12 DPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDP 56 (71)
T ss_dssp SSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCH
T ss_pred ChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCc
Confidence 455544567788999999999988888888899988887 76544
No 22
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=87.35 E-value=0.24 Score=48.65 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=19.0
Q ss_pred HhccCChHHHHHHHHhhCChHHHHHHh
Q 018937 209 NQMLQNPAVTQMMQSLLSNPQYMNQIL 235 (348)
Q Consensus 209 ~~mm~nP~~~~mmq~l~sNP~lm~qmi 235 (348)
.-+-++|.|+++-+.+.+||++++.+|
T Consensus 238 ~~Lr~~pqf~~lR~~vq~nP~~l~~~l 264 (368)
T 1oqy_A 238 EFLRDQPQFQNMRQVIQQNPALLPALL 264 (368)
T ss_dssp HHHHHSHHHHHHHHSTTTCTTHHHHHH
T ss_pred HHHhcChHHHHHHHHHHhChHHHHHHH
Confidence 344567777777777778888776665
No 23
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=82.63 E-value=0.5 Score=35.60 Aligned_cols=17 Identities=24% Similarity=0.751 Sum_probs=8.3
Q ss_pred hhChh-hhh-ccCChHHHH
Q 018937 35 DRNPE-LAH-ILNDPSTLR 51 (348)
Q Consensus 35 ~~nPe-l~~-~ln~P~~lr 51 (348)
.+||. ++. .++||+.+.
T Consensus 42 ~~NP~~i~~~~~~dPrv~~ 60 (71)
T 2llv_A 42 KQNPQAIGQDLFTDPRLMT 60 (71)
T ss_dssp HHSCTTHHHHTTTCHHHHH
T ss_pred HHCHHHHHHHHhhCcHHHH
Confidence 34543 344 556665444
No 24
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=79.69 E-value=0.67 Score=33.15 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhhccCCCCCch
Q 018937 317 LELFFTTILKMLKPNGIPYRS 337 (348)
Q Consensus 317 ~e~~y~~qL~qL~~mGf~~~~ 337 (348)
+..+-.+.|+|+.+|||.|+.
T Consensus 6 ~D~rl~~al~qMl~MGF~neg 26 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFSDEG 26 (52)
T ss_dssp SCHHHHHHHHHHHTTTCCCTT
T ss_pred cChHHHHHHHHHHHcCCCccc
Confidence 456789999999999999974
No 25
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=72.73 E-value=1 Score=29.34 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=15.3
Q ss_pred HHHHHHhhccCCCCCchhh
Q 018937 321 FTTILKMLKPNGIPYRSFI 339 (348)
Q Consensus 321 y~~qL~qL~~mGf~~~~~~ 339 (348)
|.+.+++|.+|||..+..+
T Consensus 4 ~~~~i~~L~~mGf~~~~a~ 22 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAA 22 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 6778999999999865543
No 26
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=71.43 E-value=1.4 Score=30.64 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhccCCCCCchhh
Q 018937 318 ELFFTTILKMLKPNGIPYRSFI 339 (348)
Q Consensus 318 e~~y~~qL~qL~~mGf~~~~~~ 339 (348)
...|.+.+++|.+|||.-.+.+
T Consensus 5 ~~~~~~~i~~L~~MGF~~~~a~ 26 (49)
T 1ify_A 5 GSEYETMLTEIMSMGYERERVV 26 (49)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHH
T ss_pred CccCHHHHHHHHHcCCCHHHHH
Confidence 4568899999999999554433
No 27
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=64.24 E-value=1.8 Score=28.96 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=13.6
Q ss_pred HHHHHhhccCCCCCchhh
Q 018937 322 TTILKMLKPNGIPYRSFI 339 (348)
Q Consensus 322 ~~qL~qL~~mGf~~~~~~ 339 (348)
.+.+++|.+|||...+.+
T Consensus 5 e~~i~~L~~MGF~~~~a~ 22 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAH 22 (43)
T ss_dssp HHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 367999999999764443
No 28
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.53 E-value=1.1 Score=30.76 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=16.6
Q ss_pred HHHHHHHhhccCCCCCchhhh
Q 018937 320 FFTTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 320 ~y~~qL~qL~~mGf~~~~~~~ 340 (348)
.|.+.|++|.+|||..+..++
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~ 28 (47)
T 2ekk_A 8 VNQQQLQQLMDMGFTREHAME 28 (47)
T ss_dssp SCHHHHHHHHHHHCCHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHH
Confidence 467789999999998865544
No 29
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=56.43 E-value=2.5 Score=32.12 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhhccCCCCCchhhh
Q 018937 317 LELFFTTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 317 ~e~~y~~qL~qL~~mGf~~~~~~~ 340 (348)
.+..|.+.|++|.+|||.-++.+.
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~ 48 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEV 48 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHH
T ss_pred CCcccHHHHHHHHHcCCCHHHHHH
Confidence 456678899999999997655443
No 30
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.41 E-value=4.1 Score=29.87 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=14.3
Q ss_pred HHHHHhhccCCCCCchhhh
Q 018937 322 TTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 322 ~~qL~qL~~mGf~~~~~~~ 340 (348)
.+.|++|.+|||..++.++
T Consensus 10 ~~~I~~L~~MGF~~~~a~~ 28 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQ 28 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 4578999999997655543
No 31
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.79 E-value=3.6 Score=29.94 Aligned_cols=20 Identities=5% Similarity=0.032 Sum_probs=15.0
Q ss_pred HHHHHHhhccCCCCCchhhh
Q 018937 321 FTTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 321 y~~qL~qL~~mGf~~~~~~~ 340 (348)
+.+.|++|.+|||.-+..++
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~ 28 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALK 28 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHH
Confidence 56789999999997644433
No 32
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=39.66 E-value=9.3 Score=26.24 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.5
Q ss_pred HHHHhhccCCCCCchhhhhc
Q 018937 323 TILKMLKPNGIPYRSFIASV 342 (348)
Q Consensus 323 ~qL~qL~~mGf~~~~~~~~~ 342 (348)
+-+++|.+|||.....+.-.
T Consensus 6 eaI~rL~~mGF~~~~a~~Al 25 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAY 25 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 45899999999987666543
No 33
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.98 E-value=8.2 Score=29.03 Aligned_cols=20 Identities=10% Similarity=-0.082 Sum_probs=14.8
Q ss_pred HHHHHHhhccCCCCCchhhh
Q 018937 321 FTTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 321 y~~qL~qL~~mGf~~~~~~~ 340 (348)
..+.|++|.+|||.-+..++
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~ 48 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARK 48 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHH
Confidence 45679999999997655443
No 34
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.27 E-value=6.6 Score=30.54 Aligned_cols=20 Identities=15% Similarity=-0.092 Sum_probs=15.6
Q ss_pred HHHHHHhhccCCCCCchhhh
Q 018937 321 FTTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 321 y~~qL~qL~~mGf~~~~~~~ 340 (348)
|.+.|++|.+|||.-+.++.
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~ 48 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEA 48 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHH
Confidence 56789999999997655544
No 35
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=29.57 E-value=17 Score=29.76 Aligned_cols=16 Identities=19% Similarity=0.465 Sum_probs=13.5
Q ss_pred HHHHHHhhccCCCCCc
Q 018937 321 FTTILKMLKPNGIPYR 336 (348)
Q Consensus 321 y~~qL~qL~~mGf~~~ 336 (348)
|.+-+.+|.+|||...
T Consensus 76 ~~~~v~~L~eMGF~~~ 91 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELK 91 (118)
T ss_dssp HHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHcCCCHH
Confidence 6678999999999654
No 36
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.35 E-value=11 Score=28.43 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHHHHhhccCCCCCchhh
Q 018937 322 TTILKMLKPNGIPYRSFI 339 (348)
Q Consensus 322 ~~qL~qL~~mGf~~~~~~ 339 (348)
.+.|++|.+|||.-...+
T Consensus 10 e~~v~~L~~MGF~~~~a~ 27 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACR 27 (74)
T ss_dssp HHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 457899999999864443
No 37
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.26 E-value=12 Score=27.47 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=13.1
Q ss_pred HHHhhccCCCCCchhhh
Q 018937 324 ILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 324 qL~qL~~mGf~~~~~~~ 340 (348)
.|++|.+|||.-...++
T Consensus 12 ~v~~L~~MGF~~~~a~~ 28 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALK 28 (64)
T ss_dssp SHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 58899999998755443
No 38
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.21 E-value=14 Score=26.98 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=13.9
Q ss_pred HHHHhhccCCCCCchhhh
Q 018937 323 TILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 323 ~qL~qL~~mGf~~~~~~~ 340 (348)
+.|+||.+|||.-...++
T Consensus 11 ~~v~~L~~MGF~~~~a~~ 28 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEK 28 (64)
T ss_dssp CHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 468999999998755543
No 39
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.43 E-value=11 Score=27.46 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=13.8
Q ss_pred HHHHhhccCCCCCchhhh
Q 018937 323 TILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 323 ~qL~qL~~mGf~~~~~~~ 340 (348)
+.|++|.+|||.-...++
T Consensus 21 ~~i~~L~~MGF~~~~a~~ 38 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQK 38 (64)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 569999999998755443
No 40
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.10 E-value=20 Score=27.78 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=17.4
Q ss_pred HHHH-HHHHHhhccCCCCCchhhh
Q 018937 318 ELFF-TTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 318 e~~y-~~qL~qL~~mGf~~~~~~~ 340 (348)
+..+ .+.+++|.+|||.-+.+++
T Consensus 17 ~~~~n~~~I~qL~~MGF~~~~a~~ 40 (85)
T 2dkl_A 17 EAWIMSRLIKQLTDMGFPREPAEE 40 (85)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccccCHHHHHHHHHcCCCHHHHHH
Confidence 4445 7889999999997755544
No 41
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.68 E-value=13 Score=28.77 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=16.6
Q ss_pred HHHHHHHhhccCCCCCchhhh
Q 018937 320 FFTTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 320 ~y~~qL~qL~~mGf~~~~~~~ 340 (348)
.+.+.|++|.+|||.....++
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~ 48 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATK 48 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHH
Confidence 467889999999998755544
No 42
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.05 E-value=14 Score=28.48 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=15.6
Q ss_pred HHHHHHhhccCCCCCchhhh
Q 018937 321 FTTILKMLKPNGIPYRSFIA 340 (348)
Q Consensus 321 y~~qL~qL~~mGf~~~~~~~ 340 (348)
+.+.|++|.+|||.....++
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~ 48 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQK 48 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHH
Confidence 56779999999998755544
Done!