BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018938
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 26/238 (10%)
Query: 26 NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
N K V+ + F YP HP + ++ T TL G LVG NG+GK+T+ ++
Sbjct: 12 NMKGLVKFQDVSFAYPN---HP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 86 -------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMD 138
GGK +++ E + H + G +R +A+ P +
Sbjct: 66 QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 139 VSAEKMIFG----VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 194
++A M G ++G PQ D ++ +++S GQR+ V + L++ ++
Sbjct: 126 ITAVAMESGAHDFISGF-PQG-------YDTEVGETGNQLSGGQRQAVALARALIRKPRL 177
Query: 195 LLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
L+LD+ T + E T++ TH L HI+++ G +
Sbjct: 178 LILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS-LAERAHHILFLKEGSV 234
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 26 NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
N K V+ + F YP HP + ++ T TL G LVG NG+GK+T+ ++
Sbjct: 12 NMKGLVKFQDVSFAYPN---HP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 86 -------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMD 138
GGK +++ E + H + G +R +A+ P +
Sbjct: 66 QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 139 VSAEKMIFG----VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 194
++A M G ++G PQ D ++ +++S GQR+ V + L++ ++
Sbjct: 126 ITAVAMESGAHDFISGF-PQG-------YDTEVGETGNQLSGGQRQAVALARALIRKPRL 177
Query: 195 LLLDEIT 201
L+LD T
Sbjct: 178 LILDNAT 184
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G+ +N LT+ G+ +L+G +G GKTT L++I G + EP GR F D
Sbjct: 23 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEP----TEGRIYFGDR-- 74
Query: 110 TSSGDLSYLGGEWRR-EVAFAGFEVPIQMDVSAEKMIFGVA-------GIDPQRR--AEL 159
D++YL + R + F + V M V E + F + ID + R AEL
Sbjct: 75 ----DVTYLPPKDRNISMVFQSYAVWPHMTVY-ENIAFPLKIKKFPKDEIDKRVRWAAEL 129
Query: 160 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKE 219
+++ ++ L+ ++S GQR+RV + ++ VLL+DE K
Sbjct: 130 LQIEEL-LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 188
Query: 220 CEERGATIIYATH 232
++ T IY TH
Sbjct: 189 QQKLKVTTIYVTH 201
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 26 NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
N K V+ + F YP HP + ++ T TL G LVG NG+GK+T+ ++
Sbjct: 12 NMKGLVKFQDVSFAYPN---HP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 86 -------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMD 138
GGK +++ E + H + G +R +A+ P +
Sbjct: 66 QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 139 VSAEKMIFG----VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 194
++A M G ++G PQ D ++ ++++ GQR+ V + L++ ++
Sbjct: 126 ITAVAMESGAHDFISGF-PQG-------YDTEVGETGNQLAVGQRQAVALARALIRKPRL 177
Query: 195 LLLDEIT 201
L+LD T
Sbjct: 178 LILDNAT 184
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G+ +N LT+ G+ +L+G +G GKTT L++I G + EP GR F D
Sbjct: 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEP----TEGRIYFGDR-- 73
Query: 110 TSSGDLSYLGGEWRR-EVAFAGFEVPIQMDVSAEKMIFGVA-------GIDPQRR--AEL 159
D++YL + R + F + V M V E + F + ID + R AEL
Sbjct: 74 ----DVTYLPPKDRNISMVFQSYAVWPHMTVY-ENIAFPLKIKKFPKDEIDKRVRWAAEL 128
Query: 160 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKE 219
+++ ++ L+ ++S GQR+RV + ++ VLL+DE K
Sbjct: 129 LQIEEL-LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187
Query: 220 CEERGATIIYATH 232
++ T IY TH
Sbjct: 188 QQKLKVTTIYVTH 200
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 20/187 (10%)
Query: 23 VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
V+E + VE + FTYPG D P + + L + AG LVG +G+GK+TI
Sbjct: 334 VIERATGDVEFRNVTFTYPGRD-------VPALRNINLKIPAGKTVALVGRSGSGKSTIA 386
Query: 83 KIIG-------GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPI 135
+I G+ +++ ++ ++ + S ++ +A+A E
Sbjct: 387 SLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYS 446
Query: 136 QMDV-SAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 194
+ + A +M + + I+ LD + +S GQR+R+ I LL+ +
Sbjct: 447 REQIEEAARMAYAMDFINKMDNG-----LDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501
Query: 195 LLLDEIT 201
L+LDE T
Sbjct: 502 LILDEAT 508
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 35/188 (18%)
Query: 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
+E + F YP P P+ DF+L++ +G LVG +G+GK+T+L ++ +
Sbjct: 373 LEFKNVHFAYPA---RP---EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL--LRL 424
Query: 91 VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIFG-- 147
+P T D+ L W R + PI S AE + +G
Sbjct: 425 YDPA----------SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 474
Query: 148 ----VAGIDPQRRAELIKVLDIDLSW----------RMHKVSDGQRRRVQICMGLLKPFK 193
V + QR AE+ + ++ + +S GQ++R+ I LLK K
Sbjct: 475 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 534
Query: 194 VLLLDEIT 201
+LLLDE T
Sbjct: 535 ILLLDEAT 542
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 35/188 (18%)
Query: 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
+E + F YP P P+ DF+L++ +G LVG +G+GK+T+L ++ +
Sbjct: 342 LEFKNVHFAYPA---RP---EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL--LRL 393
Query: 91 VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIFG-- 147
+P T D+ L W R + PI S AE + +G
Sbjct: 394 YDPA----------SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 443
Query: 148 ----VAGIDPQRRAELIKVLDIDLSW----------RMHKVSDGQRRRVQICMGLLKPFK 193
V + QR AE+ + ++ + +S GQ++R+ I LLK K
Sbjct: 444 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 503
Query: 194 VLLLDEIT 201
+LLLDE T
Sbjct: 504 ILLLDEAT 511
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
V+ + + F YP P S P++ +L + G LVGS+G GK+T+++++ +
Sbjct: 1030 NVQFSGVVFNYPT---RP---SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ER 1081
Query: 90 MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIFG- 147
+P + S F D ++ L +W R + PI D S AE + +G
Sbjct: 1082 FYDP-----MAGSVFLD-----GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131
Query: 148 ---VAGIDPQRRA-------ELIKVLDIDLSWRM----HKVSDGQRRRVQICMGLLKPFK 193
V + RA + I L + R+ ++S GQ++R+ I L++
Sbjct: 1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH 1191
Query: 194 VLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
+LLLDE T K E G T I H ++N IV + +GK++
Sbjct: 1192 ILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTIQN-ADLIVVIQNGKVK 1248
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 36/220 (16%)
Query: 25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
+N + +E + F+YP ++ L + +G LVG++G GK+T +++
Sbjct: 382 DNIQGNLEFKNIHFSYP------SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL 435
Query: 85 IGGKHMVEP--EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-A 141
+ + + +P MV + G+ D+ + + RE+ + P+ + A
Sbjct: 436 M--QRLYDPLDGMVSIDGQ------------DIRTINVRYLREIIGVVSQEPVLFATTIA 481
Query: 142 EKMIFGVAGIDPQRRAELIK-------------VLDIDLSWRMHKVSDGQRRRVQICMGL 188
E + +G + + +K D + R ++S GQ++R+ I L
Sbjct: 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541
Query: 189 LKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATII 228
++ K+LLLDE T K E R +I
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVI 581
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
V+ + + F YP P S P++ +L + G LVGS+G GK+T+++++ +
Sbjct: 1030 NVQFSGVVFNYPT---RP---SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ER 1081
Query: 90 MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIFG- 147
+P + S F D ++ L +W R + PI D S AE + +G
Sbjct: 1082 FYDP-----MAGSVFLD-----GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131
Query: 148 ---VAGIDPQRRA-------ELIKVLDIDLSWRM----HKVSDGQRRRVQICMGLLKPFK 193
V + RA + I L + R+ ++S GQ++R+ I L++
Sbjct: 1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH 1191
Query: 194 VLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
+LLLDE T K E G T I H ++N IV + +GK++
Sbjct: 1192 ILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTIQN-ADLIVVIQNGKVK 1248
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 36/220 (16%)
Query: 25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
+N + +E + F+YP ++ L + +G LVG++G GK+T +++
Sbjct: 382 DNIQGNLEFKNIHFSYP------SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL 435
Query: 85 IGGKHMVEP--EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-A 141
+ + + +P MV + G+ D+ + + RE+ + P+ + A
Sbjct: 436 M--QRLYDPLDGMVSIDGQ------------DIRTINVRYLREIIGVVSQEPVLFATTIA 481
Query: 142 EKMIFGVAGIDPQRRAELIK-------------VLDIDLSWRMHKVSDGQRRRVQICMGL 188
E + +G + + +K D + R ++S GQ++R+ I L
Sbjct: 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541
Query: 189 LKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATII 228
++ K+LLLDE T K E R +I
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVI 581
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 32/227 (14%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G +++ + + G+R ++G +GAGKTT ++II G V G F D +
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------VPSTGELYFDDRLV 69
Query: 110 TSSGDL------SYLG------GEWRREVAFAGFEVPI-QMDVSAEKMIFGVAGIDPQRR 156
S+G L +G + AF P+ M +S E++ +R
Sbjct: 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI--------RKRV 121
Query: 157 AELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXX 214
E+ K+LDI L+ ++S GQ++RV + L+K +LLLDE
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDE-PFSNLDARMRDSAR 180
Query: 215 XXXKECEER-GATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMD 259
KE + R G T++ +H + + + GKL Q+ P D
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G + D L ++ G+ + VG +G GK+T+L++I G + + +G +DT
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPP 72
Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAG----IDPQRRAELIKVL 163
G +G + F + + + V AE M FG +AG + QR ++ +VL
Sbjct: 73 AERG----VG------MVFQSYALYPHLSV-AENMSFGLKLAGAKKEVINQRVNQVAEVL 121
Query: 164 DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECE 221
+ L + +S GQR+RV I L+ V LLDE + +
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 222 ERGATIIYATH 232
G T+IY TH
Sbjct: 182 RLGRTMIYVTH 192
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 20/191 (10%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G + D L ++ G+ + VG +G GK+T+L++I G + + +G +DT
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPP 72
Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAG----IDPQRRAELIKVL 163
G +G ++ + V AE M FG +AG + QR ++ +VL
Sbjct: 73 AERG----VGMVFQSYALYPHLSV-------AENMSFGLKLAGAKKEVINQRVNQVAEVL 121
Query: 164 DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECE 221
+ L + +S GQR+RV I L+ V LLDE + +
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 222 ERGATIIYATH 232
G T+IY TH
Sbjct: 182 RLGRTMIYVTH 192
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 32/188 (17%)
Query: 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
K + + + FTYP P P++ L +NAG LVGS+G GK+TI+ ++
Sbjct: 413 KGDITVENVHFTYPS---RP---DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR 466
Query: 88 KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F 146
+ V + + D +L +L R+ VA E P + + E+ I
Sbjct: 467 YYDVLKGKITI-------DGVDVRDINLEFL----RKNVAVVSQE-PALFNCTIEENISL 514
Query: 147 GVAGIDPQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFK 193
G GI + K+ + + + R ++S GQ++R+ I L++ K
Sbjct: 515 GKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574
Query: 194 VLLLDEIT 201
+LLLDE T
Sbjct: 575 ILLLDEAT 582
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Query: 45 GHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104
+P ++ + ++ G LVG +G GK+T++ ++ LG F
Sbjct: 1085 AYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL-------ERFYDTLGGEIF 1137
Query: 105 HDTALTSSGDLSYLGGE-WRREVAFAGFEVPIQMDVS-AEKMIFGV-------AGIDPQR 155
D ++ L E R ++A E P D S AE +I+G+ A ++
Sbjct: 1138 ID-----GSEIKTLNPEHTRSQIAIVSQE-PTLFDCSIAENIIYGLDPSSVTMAQVEEAA 1191
Query: 156 R--------AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201
R AEL + + + R ++S GQ++R+ I L++ K+LLLDE T
Sbjct: 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 1245
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 20/191 (10%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G + D L ++ G+ + VG +G GK+T+L++I G + + +G +DT
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPP 72
Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAG----IDPQRRAELIKVL 163
G +G ++ + V AE M FG +AG + QR ++ +VL
Sbjct: 73 AERG----VGMVFQSYALYPHLSV-------AENMSFGLKLAGAKKEVINQRVNQVAEVL 121
Query: 164 DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECE 221
+ L + +S GQR+RV I L+ V LLD+ + +
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHK 181
Query: 222 ERGATIIYATH 232
G T+IY TH
Sbjct: 182 RLGRTMIYVTH 192
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G +++ + + G+R ++G +GAGKTT ++II G V G F D +
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------VPSTGELYFDDRLV 69
Query: 110 TSSGDL------SYLG------GEWRREVAFAGFEVPI-QMDVSAEKMIFGVAGIDPQRR 156
S+G L +G + AF P+ M +S E++ +R
Sbjct: 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI--------RKRV 121
Query: 157 AELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXX 214
E+ K+LDI L+ ++S Q++RV + L+K +LLLDE
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE-PFSNLDARMRDSAR 180
Query: 215 XXXKECEER-GATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMD 259
KE + R G T++ +H + + + GKL Q+ P D
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 38 FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
T+ I P S ++++ L++ G+ +VG +G+GK+T+ K+I ++ E V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 98 VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
+ G HD AL L G ++ + + + S EK+I+ +AG
Sbjct: 62 IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
+EL + + + + +S GQR+R+ I L+ K+L+ DE T
Sbjct: 118 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
K C +G T+I H ++N I+ + GK+
Sbjct: 177 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 215
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 38 FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
T+ I P S ++++ L++ G+ +VG +G+GK+T+ K+I ++ E V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 98 VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
+ G HD AL L G ++ + + + S EK+I+ +AG
Sbjct: 68 IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
+EL + + + + +S GQR+R+ I L+ K+L+ DE T
Sbjct: 124 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
K C +G T+I H ++N I+ + GK+
Sbjct: 183 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 221
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 38 FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
T+ I P S ++++ L++ G+ +VG +G+GK+T+ K+I ++ E V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 98 VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
+ G HD AL L G ++ + + + S EK+I+ +AG
Sbjct: 64 IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 119
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
+EL + + + + +S GQR+R+ I L+ K+L+ DE T
Sbjct: 120 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
K C +G T+I H ++N I+ + GK+
Sbjct: 179 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 217
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 44/222 (19%)
Query: 52 TPL----INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
TPL + + +L +N G+ L+ G+ G+GK+T+L+I+ G ++EP
Sbjct: 18 TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG--LIEP-------------- 61
Query: 108 ALTSSGDLSY-----LGGEWRREVAFAGFEVPIQMDVSAEKMI----FGVAGIDPQRR-- 156
+SGD+ Y G E RR + A F+ P + AE++ F V P R
Sbjct: 62 ---TSGDVLYDGERKKGYEIRRNIGIA-FQYP-EDQFFAERVFDEVAFAVKNFYPDRDPV 116
Query: 157 ---AELIKVLDIDLSWRMHKV----SDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXX 209
+ ++ + +D +V S G++RRV I ++ +L+LDE
Sbjct: 117 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 176
Query: 210 XXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
K + G T+I +H + + N +V + GK
Sbjct: 177 TDLLRIVEK-WKTLGKTVILISHDIETVINHVDRVVVLEKGK 217
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 44/222 (19%)
Query: 52 TPL----INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
TPL + + +L +N G+ L+ G+ G+GK+T+L+I+ G ++EP
Sbjct: 16 TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG--LIEP-------------- 59
Query: 108 ALTSSGDLSY-----LGGEWRREVAFAGFEVPIQMDVSAEKMI----FGVAGIDPQRR-- 156
+SGD+ Y G E RR + A F+ P + AE++ F V P R
Sbjct: 60 ---TSGDVLYDGERKKGYEIRRNIGIA-FQYP-EDQFFAERVFDEVAFAVKNFYPDRDPV 114
Query: 157 ---AELIKVLDIDLSWRMHKV----SDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXX 209
+ ++ + +D +V S G++RRV I ++ +L+LDE
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 210 XXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
K + G T+I +H + + N +V + GK
Sbjct: 175 TDLLRIVEK-WKTLGKTVILISHDIETVINHVDRVVVLEKGK 215
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 22/192 (11%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G+ +N+ L + G+ L+G +G+GK+T+L I G + +P G+ F + +
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG--IYKP----TSGKIYFDEKDV 67
Query: 110 TS----SGDLSYLGGEWR---REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 162
T ++ + W + P+++ + + ID + R E+ K+
Sbjct: 68 TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE------EIDKKVR-EVAKM 120
Query: 163 LDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKEC 220
L ID L+ ++S GQ++RV I L+K +VLLLDE +
Sbjct: 121 LHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180
Query: 221 EERGATIIYATH 232
+E G T +Y TH
Sbjct: 181 KELGITTVYVTH 192
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 32/193 (16%)
Query: 23 VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
V++ + +E + FTYPG + P + + L + AG LVG +G+GK+TI
Sbjct: 334 VIDRATGDLEFRNVTFTYPGRE-------VPALRNINLKIPAGKTVALVGRSGSGKSTIA 386
Query: 83 KIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE 142
+I + ++ + + G HD Y R +VA V + D A
Sbjct: 387 SLITRFYDIDEGHILMDG----HDLR-------EYTLASLRNQVALVSQNVHLFNDTVAN 435
Query: 143 KMIFGVAGIDPQRRAE----------LIKVLDIDLSWRMHK----VSDGQRRRVQICMGL 188
+ + + + E I +D L + + +S GQR+R+ I L
Sbjct: 436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495
Query: 189 LKPFKVLLLDEIT 201
L+ +L+LDE T
Sbjct: 496 LRDSPILILDEAT 508
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 15/222 (6%)
Query: 38 FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
T+ I P S ++++ L++ G+ +VG G+GK+T+ K+I ++ E V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 98 VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
+ G HD AL L G ++ + + + S EK+I+ +AG
Sbjct: 64 IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 119
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
+EL + + + + +S GQR+R+ I L+ K+L+ DE T
Sbjct: 120 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
K C +G T+I H ++N I+ + GK+
Sbjct: 179 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 217
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 33/216 (15%)
Query: 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
K +E + F+Y DG + D + T+ G LVG +GAGK+TIL+++
Sbjct: 51 KGRIEFENVHFSYA--DGRET------LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102
Query: 88 KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG 147
+ + +++ G+ + +T + S++G + V F D A+ + +G
Sbjct: 103 FYDISSGCIRIDGQDI---SQVTQASLRSHIGVVPQDTVLFN--------DTIADNIRYG 151
Query: 148 --VAGIDP-QRRAELIKVLDIDLSW----------RMHKVSDGQRRRVQICMGLLKPFKV 194
AG D + A+ + D +++ R K+S G+++RV I +LK +
Sbjct: 152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211
Query: 195 LLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYA 230
+LLDE T K C R TI+ A
Sbjct: 212 ILLDEATSALDTSNERAIQASLAKVCANR-TTIVVA 246
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%)
Query: 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104
+TP++ND +L+L+ G+ ++G++G GKTT+L+ + G + + + G++ F
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 38 FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
T+ I P S ++++ L++ G+ +VG +G+GK+T+ K+I ++ E V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 98 VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
+ G HD AL L G ++ + + + S EK+I+ +AG
Sbjct: 68 IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
+EL + + + + +S GQR+R+ I L+ K+L+ D+ T
Sbjct: 124 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEH 182
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
K C +G T+I H ++N I+ + GK+
Sbjct: 183 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 221
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
+ + L + G+ ++G +G+GK+T+L IIG + K + D T+ D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-------LDKPTEGEVYIDNIKTNDLD 73
Query: 115 LSYLGGEWRREVAFAGFE----VPI--QMDVSAEKMIF----GVAGIDPQRRA-ELIKVL 163
L R ++ F F+ +P+ ++ +IF ++G + ++RA E +K+
Sbjct: 74 DDELTKIRRDKIGFV-FQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA 132
Query: 164 DIDLSWRMHK---VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKEC 220
+++ + HK +S GQ++RV I L ++L D+ T K
Sbjct: 133 ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN 192
Query: 221 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
EE G T++ TH + + + I+Y+ G+++
Sbjct: 193 EEDGKTVVVVTHDIN-VARFGERIIYLKDGEVE 224
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 18/230 (7%)
Query: 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII----- 85
V+ + F YP ++ T TL G+ LVG NG+GK+T+ ++
Sbjct: 15 VQFQDVSFAYPNRP------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 68
Query: 86 --GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 143
GG+ +++ + + H + G + +A+ + P +++A
Sbjct: 69 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 128
Query: 144 MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXX 203
+ G + L + D ++ ++S GQR+ V + L++ VL+LD+ T
Sbjct: 129 VKSGAHSF----ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA 184
Query: 204 XXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
+ E +++ T +E HI+++ G ++
Sbjct: 185 LDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-DHILFLEGGAIR 233
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 12/200 (6%)
Query: 38 FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
T+ I P S ++++ L++ G+ +VG +G+GK+T+ K+I ++ E V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 98 VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
+ G HD AL L G ++ + + + S EK+I+ +AG
Sbjct: 62 IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
+EL + + + + +S GQR+R+ I L+ K+L+ DE T
Sbjct: 118 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 211 XXXXXXXKECEERGATIIYA 230
K C+ R II A
Sbjct: 177 VIMRNMHKICKGRTVIIIAA 196
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 12/200 (6%)
Query: 38 FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
T+ I P S ++++ L++ G+ +VG +G+GK+T+ K+I ++ E V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 98 VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
+ G HD AL L G ++ + + + S EK+I+ +AG
Sbjct: 68 IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
+EL + + + + +S GQR+R+ I L+ K+L+ DE T
Sbjct: 124 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 211 XXXXXXXKECEERGATIIYA 230
K C+ R II A
Sbjct: 183 VIMRNMHKICKGRTVIIIAA 202
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 21/212 (9%)
Query: 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
+ + L + G+ ++G +G+GK+T+L IIG + K + D T+ D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-------LDKPTEGEVYIDNIKTNDLD 73
Query: 115 LSYLGGEWRREVAFAGFE---VPI--QMDVSAEKMIF----GVAGIDPQRRA-ELIKVLD 164
L R ++ F + +P+ ++ +IF ++G + ++RA E +K+ +
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 165 IDLSWRMHK---VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECE 221
++ + HK +S GQ++RV I L ++L D+ T K E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 222 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
E G T++ TH + + + I+Y+ G+++
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEVE 224
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
E V++ + FTY G + P ++ + ++ G LVG +G+GK+TI +
Sbjct: 336 ERVNGEVDVKDVTFTYQGKE-------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 85 IGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM 144
+ V+ + + G D LT+ RR A V + D A +
Sbjct: 389 FTRFYDVDSGSICLDGHDV-RDYKLTN----------LRRHFALVSQNVHLFNDTIANNI 437
Query: 145 IFGVAGI-------DPQRRAELIKV-------LDIDLSWRMHKVSDGQRRRVQICMGLLK 190
+ G R+A ++ LD + +S GQR+RV I LL+
Sbjct: 438 AYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497
Query: 191 PFKVLLLDEIT 201
VL+LDE T
Sbjct: 498 DAPVLILDEAT 508
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 23 VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
V K V++ ++F YPG S P I D + R ++G NGAGK+T++
Sbjct: 664 VKTKQKAIVKVTNMEFQYPGT-------SKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 716
Query: 83 KIIGGK 88
++ G+
Sbjct: 717 NVLTGE 722
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 89/228 (39%), Gaps = 26/228 (11%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G ++ + + G+ L+G +G GKTT L ++ G + K + D L
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-------IYKPTSGEIYFDDVL 66
Query: 110 TSSGDLSYLGGEWRREV--AFAGFEVPIQMDVSAEKMIFGVAGID------PQRRAELIK 161
+ Y REV F + + M V E + F + +R E+ +
Sbjct: 67 VNDIPPKY------REVGMVFQNYALYPHMTV-FENIAFPLRARRISKDEVEKRVVEIAR 119
Query: 162 VLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKE 219
L ID L + ++S GQ++RV + L+K KVLL DE
Sbjct: 120 KLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179
Query: 220 CEERGATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMDKVKEASK 266
+E G T +Y TH S I GKL Q P D+V ++ K
Sbjct: 180 QQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTP-DEVYDSPK 226
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 19/179 (10%)
Query: 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
+E + + F+YP H S IN F + +G C LVG G+GK+TI K++ +
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKS---INFF---IPSGTTCALVGHTGSGKSTIAKLLYRFY 70
Query: 90 MVEPEM------VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 143
E ++ V R++ D + + + ++D + E+
Sbjct: 71 DAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG------KLDATDEE 124
Query: 144 MIFGVAGIDPQRRAE-LIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201
+I E L K D + + K+S G+R+R+ I LLK K+++ DE T
Sbjct: 125 VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT 183
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 20/218 (9%)
Query: 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------GKHMVEPEMVKVLGRSAFHDT 107
+N+ +L + AG ++G++GAGK+T+++ + G +V+ + + L S
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL 167
+ R V F +P+++D + + + +R EL+ ++ +
Sbjct: 81 RRQIGMIFQHFNLLSSRTV-FGNVALPLELDNTPKDEV-------KRRVTELLSLVGLGD 132
Query: 168 SWRMH--KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGA 225
+ +S GQ++RV I L KVLL DE T G
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 226 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263
TI+ TH D ++ + +++G+L + D V E
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGEL---IEQDTVSE 227
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 38/162 (23%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G TP++ D + G + GS GAGKT++L +I G+ +EP
Sbjct: 31 GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEP---------------- 72
Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV--LDIDL 167
S G + + G ++F I E +IFGV+ D R +IK L+ D+
Sbjct: 73 -SEGKIKHSG-----RISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDI 125
Query: 168 SWRMHK-----------VSDGQRRRVQICMGLLKPFKVLLLD 198
S K +S GQR R+ + + K + LLD
Sbjct: 126 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 167
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 38/162 (23%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G TP++ D + G + GS GAGKT++L +I G+ +EP
Sbjct: 19 GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEP---------------- 60
Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV--LDIDL 167
S G + + G ++F I E +IFGV+ D R +IK L+ D+
Sbjct: 61 -SEGKIKHSG-----RISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDI 113
Query: 168 SWRMHK-----------VSDGQRRRVQICMGLLKPFKVLLLD 198
S K +S GQR R+ + + K + LLD
Sbjct: 114 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 155
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 21/152 (13%)
Query: 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
+++ +L + +G+ +++G GAGKT L++I G H+ P+ ++ L D
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRI----------LLDGKD 63
Query: 115 LSYLGGEWRREVAFA--GFEVPIQMDVSAEKMIFGVAG---IDPQRRAELIKVLDID--L 167
++ L E + ++AF + + M+V + + FG+ DP+R + + L I+ L
Sbjct: 64 VTDLSPE-KHDIAFVYQNYSLFPHMNVK-KNLEFGMRMKKIKDPKRVLDTARDLKIEHLL 121
Query: 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 199
+S G+++RV + L+ K+LLLDE
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDE 153
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 26/197 (13%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------GKHMVEPEMVKVLGRS 102
G + D +L + G+ +L+G +G GKTT L+ I G+ +E +V +
Sbjct: 17 GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKG 76
Query: 103 AF-----HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR- 156
F D A Y +AF P+++ ++ ID + R
Sbjct: 77 VFVPPKERDVAXVFQSYALYPHXTVYDNIAF-----PLKLRKVPKQE------IDKRVRE 125
Query: 157 -AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXX 215
AE + + ++ L+ + ++S GQR+RV + +++ KV L DE
Sbjct: 126 VAEXLGLTEL-LNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAE 184
Query: 216 XXKECEERGATIIYATH 232
K + G T IY TH
Sbjct: 185 LKKLQRQLGVTTIYVTH 201
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 25/170 (14%)
Query: 45 GHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104
G G T ++ + + GD+ +L G NGAGKTT+L I+ V + G+
Sbjct: 28 GRXKQGKT-ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXP- 85
Query: 105 HDTALTSSGDLSYLGGEWRREVAFAGF---------EVPIQMDVSAEKMIFGV-AGIDPQ 154
G + Y R+ + F E I + +S GV ID +
Sbjct: 86 --------GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE 137
Query: 155 RRAE---LIKVLDIDLSWRMH--KVSDGQRRRVQICMGLLKPFKVLLLDE 199
R E L+K++ + + +S G+++RV I L +VL+LDE
Sbjct: 138 IRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDE 187
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 23 VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
V K V++ +F YPG S P I D + R ++G NGAGK+T++
Sbjct: 658 VKTKQKAIVKVTNXEFQYPGT-------SKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 710
Query: 83 KIIGGK 88
++ G+
Sbjct: 711 NVLTGE 716
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 23 VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
V K V++ +F YPG S P I D + R ++G NGAGK+T++
Sbjct: 664 VKTKQKAIVKVTNXEFQYPGT-------SKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 716
Query: 83 KIIGGK 88
++ G+
Sbjct: 717 NVLTGE 722
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 31/191 (16%)
Query: 24 MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
+E + ++I+ + F Y P++ D L++ G+ VG +G GK+T++
Sbjct: 333 IEIKQGRIDIDHVSFQYN-------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN 385
Query: 84 IIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 143
+I + V + + G H+ +L G R ++ + + D E
Sbjct: 386 LIPRFYDVTSGQILIDG----HNIK-------DFLTGSLRNQIGLVQQDNILFSDTVKEN 434
Query: 144 MIFGVAGIDPQRRAELIKV-------------LDIDLSWRMHKVSDGQRRRVQICMGLLK 190
++ G + E K+ D ++ R K+S GQ++R+ I L
Sbjct: 435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494
Query: 191 PFKVLLLDEIT 201
+L+LDE T
Sbjct: 495 NPPILILDEAT 505
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 90/218 (41%), Gaps = 20/218 (9%)
Query: 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------GKHMVEPEMVKVLGRSAFHDT 107
+N+ +L + AG ++G++GAGK+T+++ + G +V+ + + L S
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL 167
+ R V F +P+++D + + + +R EL+ ++ +
Sbjct: 104 RRQIGXIFQHFNLLSSRTV-FGNVALPLELDNTPKDEV-------KRRVTELLSLVGLGD 155
Query: 168 SWRMH--KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGA 225
+ +S GQ++RV I L KVLL D+ T G
Sbjct: 156 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 226 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263
TI+ TH D ++ + +++G+L + D V E
Sbjct: 216 TILLITHEXDVVKRICDCVAVISNGEL---IEQDTVSE 250
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
G + + +L + G+ +L+G +G GKTT L++I G + EP ++ + L
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQI-----YIGDKL 66
Query: 110 TSSGDLSYLGGEWRREVA--FAGFEVPIQMDVSAEKMIFGV-------AGIDPQRR--AE 158
+ + R++A F + + M V + + F + ID + R AE
Sbjct: 67 VADPEKGIFVPPKDRDIAMVFQSYALYPHMTVY-DNIAFPLKLRKVPRQEIDQRVREVAE 125
Query: 159 LIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXK 218
L+ + ++ L+ + ++S GQR+RV + +++ +V L+DE K
Sbjct: 126 LLGLTEL-LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 219 ECEERGATIIYATH 232
+ G T IY TH
Sbjct: 185 LQRQLGVTTIYVTH 198
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 90/218 (41%), Gaps = 20/218 (9%)
Query: 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------GKHMVEPEMVKVLGRSAFHDT 107
+N+ +L + AG ++G++GAGK+T+++ + G +V+ + + L S
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL 167
+ R V F +P+++D + + + +R EL+ ++ +
Sbjct: 104 RRQIGMIFQHFNLLSSRTV-FGNVALPLELDNTPKDEV-------KRRVTELLSLVGLGD 155
Query: 168 SWRMH--KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGA 225
+ +S GQ++RV I L KVLL D+ T G
Sbjct: 156 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 226 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263
TI+ TH D ++ + +++G+L + D V E
Sbjct: 216 TILLITHEMDVVKRICDCVAVISNGEL---IEQDTVSE 250
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 22/153 (14%)
Query: 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
P++ T+T+ G+ G NG GKTT+LK I ++P + G ++ +T
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKP----LKGEIIYNGVPIT-- 74
Query: 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR--RAELIKVLD----ID 166
+ + ++ F E+ + +S E + VA + + + E++ L+ +D
Sbjct: 75 --------KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD 126
Query: 167 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 199
L ++ ++S G RRVQ+ LL ++ +LD+
Sbjct: 127 LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD 159
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 20/202 (9%)
Query: 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
L LN GD ++G NG GK+T+L ++ G H ++V F +S
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPF 79
Query: 114 DLSYLGGEWR-REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMH 172
S L R F P D + +D L K
Sbjct: 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQV-----AMQALDYLNLTHLAK-------REFT 127
Query: 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATH 232
+S GQR+ + I + K++LLDE T + + T+++ TH
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 233 IFDGLENWPSHIVYVAHGKLQL 254
P+ +V +A+ L L
Sbjct: 188 -------QPNQVVAIANKTLLL 202
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Query: 59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYL 118
+ + G+ ++G NG GK+T+ + G +++P GR F + + D S
Sbjct: 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNG--ILKPSS----GRILFDNKPI----DYSRK 77
Query: 119 GGEWRREVAFAGFEVPIQMDVSA---EKMIFGVAGID-PQRRAELIKVLDIDLSWR---- 170
G RE F+ P SA + + FG + P+ E+ K +D L
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE--DEIRKRVDNALKRTGIEH 135
Query: 171 -----MHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGA 225
H +S GQ++RV I L+ KVL+LDE T + +E G
Sbjct: 136 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 226 TIIYATHIFDGLENWPSHIVYVAHGKLQL 254
TII ATH D + + ++ + G++ L
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMKEGRVIL 224
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 29/167 (17%)
Query: 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110
S ++ D + G +G GK+TI ++ + + + G+ + +L
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ-PIDNISLE 72
Query: 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI----- 165
+ WR ++ F + I E + +G+ G +L +VLD+
Sbjct: 73 N----------WRSQIGFVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFARS 120
Query: 166 -----------DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201
++ R K+S GQR+R+ I L+ K+L+LDE T
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT 167
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
LIND +L + +G+ ++G NGAGK+T+L+++ G
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 30/230 (13%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE--MVKVLGRSAFHDT 107
G ++ + + G+ L+G NGAGKTT L+II +++P +V V G++ +
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS--TLIKPSSGIVTVFGKNVVEEP 83
Query: 108 ALTSSGDLSYL-----------GGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR 156
+SYL G E+ R V AGF ++ E+M+ R
Sbjct: 84 HEVRK-LISYLPEEAGAYRNMQGIEYLRFV--AGFYASSSSEI--EEMV---------ER 129
Query: 157 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXX 216
A I L + R+ S G R++ I L+ ++ +LDE T
Sbjct: 130 ATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT-SGLDVLNAREVRKI 188
Query: 217 XKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 266
K+ + G TI+ ++H +E I + +G + ++++KE K
Sbjct: 189 LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 238
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 50/242 (20%)
Query: 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
+E+N++ F Y G ++ D G ++VG NG+GKTT+LKI+ G
Sbjct: 12 IELNSVSFRYNG---------DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG--- 59
Query: 91 VEPEMVKVLGRSAFHDTALTSSGDLSYLGGE------WRREVAFAGFEVPIQMDVSA--- 141
L ++G++ +L G R+ V + F+ P + A
Sbjct: 60 -----------------LLAAAGEI-FLDGSPADPFLLRKNVGYV-FQNPSSQIIGATVE 100
Query: 142 EKMIFG--VAGID-PQRRAELIKVLD-IDLSWRMH----KVSDGQRRRVQICMGLLKPFK 193
E + F + G+D + R + KVL+ + LS +S GQ++R+ I L + +
Sbjct: 101 EDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTR 160
Query: 194 VLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
L LDE + + G II TH + L++ I+++++G +
Sbjct: 161 FLALDE-PVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDM-DFILHISNGTID 218
Query: 254 LA 255
Sbjct: 219 FC 220
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 29/157 (18%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD--- 106
G TP++ D + G + GS GAGKT++L +I G+ +K GR +F
Sbjct: 19 GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFS 78
Query: 107 -----TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK 161
T + +SY +R + E I + ++ G GI
Sbjct: 79 WIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI---------- 128
Query: 162 VLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198
+S GQR R+ + + K + LLD
Sbjct: 129 -----------TLSGGQRARISLARAVYKDADLYLLD 154
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 70 LVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129
+VG NG GKTT +K++ G + EP KV + LT + Y+ E+ V
Sbjct: 387 IVGPNGIGKTTFVKMLAG--VEEPTEGKV-------EWDLTVAYKPQYIKAEYEGTV--- 434
Query: 130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-IDLSWR-MHKVSDGQRRRVQICMG 187
+E+ ++D S F + EL+K L IDL R + +S G+ +RV I
Sbjct: 435 -YELLSKIDSSKLNSNF--------YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 485
Query: 188 LLKPFKVLLLDE 199
LL+ + LLDE
Sbjct: 486 LLRDADIYLLDE 497
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 70 LVGSNGAGKTTILKIIGGK 88
+VG NG GKTT +KI+ G+
Sbjct: 122 IVGPNGTGKTTAVKILAGQ 140
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 38/160 (23%)
Query: 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
TP++ D + G + GS GAGKT++L +I G+ +EP S
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEP-----------------S 91
Query: 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV--LDIDLSW 169
G + + G ++F I E +IFGV+ D R +IK L+ D+S
Sbjct: 92 EGKIKHSG-----RISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISK 145
Query: 170 RMHK-----------VSDGQRRRVQICMGLLKPFKVLLLD 198
K +S+GQ+ ++ + + K + LLD
Sbjct: 146 FAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLD 185
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 36/222 (16%)
Query: 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
+ + L +N G++ +++G NG+GKTT+L+ I G L SG+
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISG--------------------LLPYSGN 59
Query: 115 LSYLGGEWRREVAFAGFEVPI----QMDVSAEKMIF---GVAGIDPQRRAELIKVLDID- 166
+ G E R+ + + + ++ V+ +++ + G+D E++K L +
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE 119
Query: 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERG 224
L +++K+S GQ V+ + L +++ LDE + +E G
Sbjct: 120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE----PFENVDAARRHVISRYIKEYG 175
Query: 225 ATIIYATHIFDGLENWPSHIVYVAHG-KLQLAMPMDKVKEAS 265
I TH D L + + Y G +LQ + + ++ E+S
Sbjct: 176 KEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 70 LVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129
+VG NG GKTT +K++ G + EP KV + LT + Y+ E+ V
Sbjct: 373 IVGPNGIGKTTFVKMLAG--VEEPTEGKV-------EWDLTVAYKPQYIKAEYEGTV--- 420
Query: 130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-IDLSWR-MHKVSDGQRRRVQICMG 187
+E+ ++D S F + EL+K L IDL R + +S G+ +RV I
Sbjct: 421 -YELLSKIDSSKLNSNF--------YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
Query: 188 LLKPFKVLLLDE 199
LL+ + LLDE
Sbjct: 472 LLRDADIYLLDE 483
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 70 LVGSNGAGKTTILKIIGGK 88
+VG NG GKTT +KI+ G+
Sbjct: 108 IVGPNGTGKTTAVKILAGQ 126
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 49 PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
PG + + + G+ L+G +G+GKTTIL++I G + P
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG--LERP--------------- 67
Query: 109 LTSSGDLSYLGGE-------WRREVA--FAGFEVPIQMDVSAEKMIFGVA-------GID 152
+ GD+ ++GG+ +R V F + + M V + + FG+ +D
Sbjct: 68 --TKGDV-WIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY-DNVSFGLREKRVPKDEMD 123
Query: 153 PQRRAELIKVLDID-LSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
+ R EL++ + ++ + R H++S GQ++RV + L +VLL DE
Sbjct: 124 ARVR-ELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182
Query: 211 XXXXXXXKECEERGATIIYATH 232
+ +E G T ++ TH
Sbjct: 183 ELRTFVRQVHDEMGVTSVFVTH 204
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 62 LNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE 121
+ G+ +VG NG GKTT +K + G + EP K+ + LT + Y+ +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAG--VEEPTEGKI-------EWDLTVAYKPQYIKAD 359
Query: 122 WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-IDLSWR-MHKVSDGQR 179
+ V +E+ ++D S F + EL+K L IDL R ++++S G+
Sbjct: 360 YEGTV----YELLSKIDASKLNSNF--------YKTELLKPLGIIDLYDREVNELSGGEL 407
Query: 180 RRVQICMGLLKPFKVLLLDE 199
+RV I LL+ + LLDE
Sbjct: 408 QRVAIAATLLRDADIYLLDE 427
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 29/155 (18%)
Query: 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD----- 106
TP++ D + G + GS GAGKT++L +I G+ +K GR +F
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
Query: 107 ---TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL 163
T + +SY +R + E I + ++ G GI
Sbjct: 111 MPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI------------ 158
Query: 164 DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198
+S GQR R+ + + K + LLD
Sbjct: 159 ---------TLSGGQRARISLARAVYKDADLYLLD 184
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 29/155 (18%)
Query: 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD----- 106
TP++ D + G + GS GAGKT++L +I G+ +K GR +F
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
Query: 107 ---TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL 163
T + +SY +R + E I + ++ G GI
Sbjct: 111 MPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI------------ 158
Query: 164 DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198
+S GQR R+ + + K + LLD
Sbjct: 159 ---------TLSGGQRARISLARAVYKDADLYLLD 184
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 38/160 (23%)
Query: 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
TP++ D + G + GS GAGKT++L +I G+ +EP S
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEP-----------------S 91
Query: 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV--LDIDLSW 169
G + + G ++F I E +I GV+ D R +IK L+ D+S
Sbjct: 92 EGKIKHSG-----RISFCSQFSWIMPGTIKENIIAGVS-YDEYRYRSVIKACQLEEDISK 145
Query: 170 RMHK-----------VSDGQRRRVQICMGLLKPFKVLLLD 198
K +S GQR R+ + + K + LLD
Sbjct: 146 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 185
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 44/186 (23%)
Query: 26 NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
+ K + + N + F++ + G+P ++ + L + G+ + GS G+GKT++L +I
Sbjct: 31 DRKHSSDENNVSFSHLCLVGNP------VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
Query: 86 GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI 145
G+ ++K GR +F W I E +I
Sbjct: 85 LGELEASEGIIKHSGRVSFCSQF------------SW------------IMPGTIKENII 120
Query: 146 FGVAGIDPQRRAELIKV--LDIDLSWRMHK-----------VSDGQRRRVQICMGLLKPF 192
FGV+ D R ++K L D++ + +S GQR R+ + + K
Sbjct: 121 FGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 179
Query: 193 KVLLLD 198
+ LLD
Sbjct: 180 DLYLLD 185
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
G ++ ++++N GD L++G NG+GK+T++ +I G
Sbjct: 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
G ++ ++++N GD L++G NG+GK+T++ +I G
Sbjct: 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 26 NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
+ K + + N + F++ + G+P ++ + L + G+ + GS G+GKT++L +I
Sbjct: 31 DRKHSSDENNVSFSHLCLVGNP------VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
Query: 86 GGKHMVEPEMVKVLGRSAF 104
G+ ++K GR +F
Sbjct: 85 LGELEASEGIIKHSGRVSF 103
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 26 NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
+ K + + N + F++ + G+P ++ + L + G+ + GS G+GKT++L +I
Sbjct: 31 DRKHSSDENNVSFSHLCLVGNP------VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
Query: 86 GGKHMVEPEMVKVLGRSAF 104
G+ ++K GR +F
Sbjct: 85 LGELEASEGIIKHSGRVSF 103
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
K + + N + F++ + G+P ++ + L + G+ + GS G+GKT++L +I G
Sbjct: 33 KHSSDENNVSFSHLCLVGNP------VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
Query: 88 KHMVEPEMVKVLGRSAF 104
+ ++K GR +F
Sbjct: 87 ELEASEGIIKHSGRVSF 103
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 38/159 (23%)
Query: 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
P++ + L + G+ + GS G+GKT++L +I G+ ++K GR +F
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQF---- 107
Query: 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV--LDIDLSWR 170
W I E +IFGV+ D R ++K L D++
Sbjct: 108 --------SW------------IMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKF 146
Query: 171 MHK-----------VSDGQRRRVQICMGLLKPFKVLLLD 198
+ +S GQR R+ + + K + LLD
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 185
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 22/228 (9%)
Query: 43 IDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------GKHMVEPEM 95
ID H G ++ +L AGD ++GS+G+GK+T L+ I G +V +
Sbjct: 10 IDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN 69
Query: 96 VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-----IFGVAG 150
+ ++ R + L L R + F F + M V M + G++
Sbjct: 70 INLV-RDKDGQLKVADKNQLRLL--RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 126
Query: 151 IDPQRRA-ELIKVLDIDL----SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXX 205
D + RA + + + ID + +H +S GQ++RV I L VLL DE T
Sbjct: 127 HDARERALKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
Query: 206 XXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
+ EE G T++ TH + SH++++ GK++
Sbjct: 186 PELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 29/155 (18%)
Query: 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD----- 106
TP++ D + G + GS GAGKT++L +I G+ +K GR +F
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 110
Query: 107 ---TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL 163
T + +SY +R + E I + ++ G GI
Sbjct: 111 MPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI------------ 158
Query: 164 DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198
+S+GQ+ ++ + + K + LLD
Sbjct: 159 ---------TLSEGQQAKISLARAVYKDADLYLLD 184
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 78/207 (37%), Gaps = 40/207 (19%)
Query: 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKII-------GGKHMVEPEMVKVLGRSAFH 105
P++ D T + G + LVG G+GKTTI+ ++ G+ +V+ ++ + RS+
Sbjct: 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLR 428
Query: 106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI 165
S +G + + F+ E + +G G + E K+
Sbjct: 429 ----------SSIGIVLQDTILFS--------TTVKENLKYGNPGATDEEIKEAAKLTHS 470
Query: 166 D-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXX 212
D L+ +S GQR+ + I L K+L+LDE T
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 213 XXXXXKECEERGATIIYATHIFDGLEN 239
K E G T I H + ++N
Sbjct: 531 QAAMWKLME--GKTSIIIAHRLNTIKN 555
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 28/150 (18%)
Query: 57 DFTLTLNAGDRC-----LLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
DF L + G+ +++G NG GKTT++K++ G ++P+
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG--ALKPD----------------E 406
Query: 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSW 169
D+ L + + F P + K I G ++PQ + +++K L ID +
Sbjct: 407 GQDIPKLNVSMKPQKIAPKF--PGTVRQLFFKKIRG-QFLNPQFQTDVVKPLRIDDIIDQ 463
Query: 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDE 199
+ +S G+ +RV I + L P + L+DE
Sbjct: 464 EVQHLSGGELQRVAIVLALGIPADIYLIDE 493
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 70 LVGSNGAGKTTILKIIGGKH------MVEP----EMVKVLGRSAFHD--TALTSSGDLSY 117
LVG+NG GK+T LKI+ GK +P E++K S + T + +
Sbjct: 108 LVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167
Query: 118 LGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDG 177
+ ++ + A + P+Q K+ + D +R +++++ ++ L + K+S G
Sbjct: 168 IKPQYVDNIPRA-IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV-LKRDIEKLSGG 225
Query: 178 QRRRVQICMGLLKPFKVLLLDE 199
+ +R I M ++ V + DE
Sbjct: 226 ELQRFAIGMSCVQEADVYMFDE 247
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
G ++ ++++ GD L++G NG+GK+T++ +I G
Sbjct: 18 GEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITG 55
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 36/159 (22%)
Query: 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
P +N T ++ G +VG G GK+++L + EM KV G A
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSAL------LAEMDKVEGHVAI-------- 64
Query: 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRA-----ELIKVLDI-- 165
+ VA+ + IQ D E ++FG +P R+ L+ L+I
Sbjct: 65 ----------KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILP 114
Query: 166 -----DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 199
++ + +S GQ++RV + + + L D+
Sbjct: 115 SGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 39/226 (17%)
Query: 1 MICIADITPFHKTXXXXXRKMAVMENSKPTVEINALKFTYPGIDGHPP---------PGS 51
++ I +I F +++ + N KP +E P ++G +
Sbjct: 296 LMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENT 355
Query: 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH--DTAL 109
P+++ ++ G ++G G+GK+T++ +I +++PE GR D
Sbjct: 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI--PRLIDPER----GRVEVDELDVRT 409
Query: 110 TSSGDL-SYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-DL 167
DL ++ + V F+G E + +G E K+ I D
Sbjct: 410 VKLKDLRGHISAVPQETVLFSG--------TIKENLKWGREDATDDEIVEAAKIAQIHDF 461
Query: 168 SWRM------------HKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201
+ S GQ++R+ I L+K KVL+LD+ T
Sbjct: 462 IISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT 507
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 66 DRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRRE 125
D C+L+G GAGK+ L++I G +V+P+ +V + D++ L E RR
Sbjct: 25 DYCVLLGPTGAGKSVFLELIAG--IVKPDRGEV----------RLNGADITPLPPE-RRG 71
Query: 126 VAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRR-------AELIKVLDIDLSWRMHKVSDG 177
+ F + + +S + I +G+ ++ R AE + + + L + ++S G
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-LDRKPARLSGG 130
Query: 178 QRRRVQICMGLLKPFKVLLLDE 199
+R+RV + L+ ++LLLDE
Sbjct: 131 ERQRVALARALVIQPRLLLLDE 152
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
R +L+G G GK+T+ I G H +VLG + T +
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLM 50
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
R +L+G G GK+T+ I G H +VLG + T +
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLM 50
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
N R +L+G G GK+T+ I G H +VLG + T +
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM 81
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
N R +L+G G GK+T+ I G H +VLG + T +
Sbjct: 4 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM 50
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
++ +L++ G+ ++G++G+GK+T+L I+G + P KV + T+
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEG--KEVDYTNEK 74
Query: 114 DLSYLGGEWRREVAFA-GFEVPIQMDVSAEKMI-----FGVAGIDPQRRAE-LIKVLDI- 165
+LS L R++ F F I + E +I G + + R E L+ L +
Sbjct: 75 ELSLL---RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG 131
Query: 166 -DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERG 224
LS + +++S G+++RV I L +L DE T K E G
Sbjct: 132 DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK-INEGG 190
Query: 225 ATIIYATH 232
+I+ TH
Sbjct: 191 TSIVMVTH 198
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 46 HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
H G+ I L + G L+G+NGAGKTT L I G
Sbjct: 13 HVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
>pdb|1ZC6|A Chain A, Crystal Structure Of Putative N-Acetylglucosamine Kinase
From Chromobacterium Violaceum. Northeast Structural
Genomics Target Cvr23.
pdb|1ZC6|B Chain B, Crystal Structure Of Putative N-Acetylglucosamine Kinase
From Chromobacterium Violaceum. Northeast Structural
Genomics Target Cvr23
Length = 305
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKV 174
L ++GG+W+ A+ G P Q A ++ A +DP+ A L++ D +W + +
Sbjct: 189 LDFVGGDWQAXXAWNGRATPAQFARLA-PLVLSAARVDPEADA-LLRQAGED-AWAIARA 245
Query: 175 SDGQRR-RVQICMGLLKPFKVLL 196
D Q V +C GL + + L
Sbjct: 246 LDPQDELPVALCGGLGQALRDWL 268
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 70 LVGSNGAGKTTILKIIGGK 88
++G NG GKTT+LKI+ G+
Sbjct: 30 VLGKNGVGKTTVLKILAGE 48
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 67 RCLLVGSNGAGKTTILKIIGGKHM--VEPEM---VKVLGRSAFHDTALTSSGDLSYLGGE 121
R L++G + AGKTTILK G+ + + P + +K L F + G L L
Sbjct: 3 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFK-LNIWDVGGLKSLRSY 61
Query: 122 WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 155
WR FE S + +I+ V D QR
Sbjct: 62 WRNY-----FE-------STDGLIWVVDSADRQR 83
>pdb|1HRO|A Chain A, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
pdb|1HRO|B Chain B, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
Length = 106
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 85 IGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM 144
I G + V P + V+GR + + S G W +V F E P Q V KM
Sbjct: 26 IKGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHP-QKIVPGTKM 84
Query: 145 IFGVAG-IDPQRRAELIKVLD 164
G G DPQ+RA++I L+
Sbjct: 85 --GYPGQPDPQKRADIIAYLE 103
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 43 IDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK-IIGGKHMVEPEMVKVL 99
++ P ST LI+ F + G R ++V AGKTTILK I G P+ ++++
Sbjct: 154 LETDPKIYSTRLIDLFA-PIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRII 210
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
++ L + G+ L+G NGAGK+T+ KI+ G +PE G + L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG----DPEYTVERG-----EILLDGEN 68
Query: 114 DLSYLGGEWRREVAFAGFEVPIQM 137
L E R+ F F+ P+++
Sbjct: 69 ILELSPDERARKGLFLAFQYPVEV 92
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
G ++ + + +++ G R L+G G+GK+T+L
Sbjct: 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 64 AGDRCLLVGSNGAGKTTILKIIGG 87
AG+ LVG NGAGK+T+L + G
Sbjct: 25 AGEILHLVGPNGAGKSTLLARMAG 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,462,085
Number of Sequences: 62578
Number of extensions: 356837
Number of successful extensions: 1342
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1175
Number of HSP's gapped (non-prelim): 134
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)