Query 018938
Match_columns 348
No_of_seqs 489 out of 2749
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.4E-59 7.5E-64 406.1 24.0 220 29-268 1-230 (240)
2 COG1125 OpuBA ABC-type proline 100.0 1.6E-55 3.5E-60 390.8 22.4 220 30-269 1-231 (309)
3 COG1120 FepC ABC-type cobalami 100.0 2.5E-55 5.4E-60 398.5 19.7 217 30-266 2-231 (258)
4 COG1135 AbcC ABC-type metal io 100.0 1.8E-54 3.8E-59 394.4 22.7 231 30-272 1-240 (339)
5 COG1124 DppF ABC-type dipeptid 100.0 2.8E-53 6.1E-58 375.9 22.5 225 29-268 2-236 (252)
6 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1E-52 2.3E-57 379.6 23.3 213 29-266 3-230 (254)
7 COG1127 Ttg2A ABC-type transpo 100.0 1E-52 2.2E-57 370.9 21.7 220 28-264 6-236 (263)
8 COG1116 TauB ABC-type nitrate/ 100.0 2.6E-52 5.7E-57 372.6 22.1 200 29-253 2-212 (248)
9 COG3638 ABC-type phosphate/pho 100.0 1.5E-52 3.2E-57 369.0 19.2 220 29-264 2-238 (258)
10 COG3842 PotA ABC-type spermidi 100.0 6.7E-52 1.4E-56 391.5 20.5 217 29-267 4-230 (352)
11 COG1131 CcmA ABC-type multidru 100.0 1E-50 2.3E-55 380.9 24.9 279 29-343 3-290 (293)
12 COG4555 NatA ABC-type Na+ tran 100.0 1E-51 2.2E-56 355.1 16.3 215 30-265 1-224 (245)
13 COG3839 MalK ABC-type sugar tr 100.0 7.2E-51 1.6E-55 382.6 22.4 217 29-267 2-227 (338)
14 COG1136 SalX ABC-type antimicr 100.0 1.9E-50 4.2E-55 359.9 23.2 211 30-253 1-221 (226)
15 COG1118 CysA ABC-type sulfate/ 100.0 9.3E-51 2E-55 369.3 19.1 220 30-268 2-232 (345)
16 COG1122 CbiO ABC-type cobalt t 100.0 2.7E-50 5.8E-55 364.7 21.8 218 29-264 2-229 (235)
17 PRK13537 nodulation ABC transp 100.0 9.6E-50 2.1E-54 377.1 24.1 214 29-264 6-228 (306)
18 COG0444 DppD ABC-type dipeptid 100.0 9.8E-50 2.1E-54 367.5 23.1 271 30-317 1-292 (316)
19 TIGR02314 ABC_MetN D-methionin 100.0 1.3E-49 2.8E-54 380.4 24.0 225 30-267 1-234 (343)
20 PRK13536 nodulation factor exp 100.0 2.2E-49 4.8E-54 379.0 23.9 216 27-264 38-262 (340)
21 PRK11650 ugpC glycerol-3-phosp 100.0 6.9E-49 1.5E-53 377.8 25.7 216 30-266 3-227 (356)
22 PRK11432 fbpC ferric transport 100.0 8.1E-49 1.8E-53 376.5 25.7 216 29-266 5-229 (351)
23 TIGR03265 PhnT2 putative 2-ami 100.0 9.2E-49 2E-53 376.6 25.7 216 29-266 3-227 (353)
24 PRK15079 oligopeptide ABC tran 100.0 1E-48 2.2E-53 373.4 25.0 282 27-316 5-305 (331)
25 COG1117 PstB ABC-type phosphat 100.0 2E-49 4.3E-54 343.9 18.1 222 28-269 5-243 (253)
26 COG4608 AppF ABC-type oligopep 100.0 1E-48 2.2E-53 353.7 23.4 248 29-318 3-254 (268)
27 COG4152 ABC-type uncharacteriz 100.0 2E-49 4.4E-54 349.8 17.4 280 30-343 2-294 (300)
28 cd03261 ABC_Org_Solvent_Resist 100.0 1.3E-48 2.9E-53 356.3 23.2 216 31-263 1-226 (235)
29 TIGR03522 GldA_ABC_ATP gliding 100.0 1.7E-48 3.7E-53 368.1 24.5 283 30-342 2-299 (301)
30 PRK11308 dppF dipeptide transp 100.0 1.7E-48 3.8E-53 371.4 24.5 278 29-315 4-295 (327)
31 PRK11022 dppD dipeptide transp 100.0 2E-48 4.2E-53 371.0 24.4 273 30-316 3-294 (326)
32 PRK10851 sulfate/thiosulfate t 100.0 3.3E-48 7.2E-53 372.7 25.8 216 30-267 2-230 (353)
33 PRK09452 potA putrescine/sperm 100.0 4.7E-48 1E-52 373.7 25.8 217 28-266 12-237 (375)
34 PRK09536 btuD corrinoid ABC tr 100.0 3.6E-48 7.9E-53 376.8 24.8 216 29-265 2-230 (402)
35 PRK15093 antimicrobial peptide 100.0 3.7E-48 8E-53 370.0 24.3 274 29-314 2-300 (330)
36 COG3840 ThiQ ABC-type thiamine 100.0 2.4E-48 5.1E-53 329.3 20.0 212 30-265 1-221 (231)
37 COG2884 FtsE Predicted ATPase 100.0 1.4E-48 3.1E-53 332.8 18.6 210 30-256 1-219 (223)
38 TIGR01288 nodI ATP-binding ABC 100.0 4.4E-48 9.6E-53 365.7 23.9 214 29-264 3-225 (303)
39 cd03296 ABC_CysA_sulfate_impor 100.0 8.7E-48 1.9E-52 351.8 24.7 213 30-264 2-227 (239)
40 PRK11000 maltose/maltodextrin 100.0 7.4E-48 1.6E-52 372.7 25.3 215 30-266 3-226 (369)
41 COG0411 LivG ABC-type branched 100.0 6.8E-49 1.5E-53 348.2 16.3 219 29-266 3-242 (250)
42 PRK09473 oppD oligopeptide tra 100.0 9.6E-48 2.1E-52 366.7 25.2 275 28-317 10-303 (330)
43 PRK11607 potG putrescine trans 100.0 1E-47 2.2E-52 371.9 25.7 218 27-266 16-242 (377)
44 TIGR03258 PhnT 2-aminoethylpho 100.0 8.1E-48 1.7E-52 370.7 24.6 215 30-266 5-231 (362)
45 PRK11153 metN DL-methionine tr 100.0 9.4E-48 2E-52 368.9 24.4 223 30-265 1-232 (343)
46 cd03265 ABC_DrrA DrrA is the A 100.0 7.6E-48 1.7E-52 347.9 22.1 210 31-261 1-219 (220)
47 COG1123 ATPase components of v 100.0 6.1E-48 1.3E-52 379.1 23.0 239 27-272 277-528 (539)
48 cd03259 ABC_Carb_Solutes_like 100.0 7.1E-48 1.5E-52 346.3 21.5 204 31-256 1-213 (213)
49 cd03256 ABC_PhnC_transporter A 100.0 1.7E-47 3.6E-52 350.0 23.6 216 31-262 1-233 (241)
50 TIGR00960 3a0501s02 Type II (G 100.0 8.5E-48 1.8E-52 346.5 20.9 207 30-252 1-216 (216)
51 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-47 3.1E-52 351.0 22.5 217 30-262 1-234 (243)
52 cd03219 ABC_Mj1267_LivG_branch 100.0 1.9E-47 4E-52 348.8 22.1 213 31-263 1-232 (236)
53 cd03258 ABC_MetN_methionine_tr 100.0 2.6E-47 5.5E-52 347.3 22.9 221 30-263 1-230 (233)
54 PRK11247 ssuB aliphatic sulfon 100.0 3.5E-47 7.6E-52 351.2 24.0 207 28-259 10-219 (257)
55 PRK13637 cbiO cobalt transport 100.0 4.4E-47 9.5E-52 356.2 24.8 221 30-263 2-234 (287)
56 PRK13647 cbiO cobalt transport 100.0 5.3E-47 1.1E-51 353.4 25.0 214 29-262 3-226 (274)
57 PRK14250 phosphate ABC transpo 100.0 1.1E-46 2.3E-51 345.1 25.8 214 30-264 3-222 (241)
58 PRK11831 putative ABC transpor 100.0 5.8E-47 1.3E-51 352.3 23.6 219 29-264 6-234 (269)
59 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.9E-47 8.5E-52 343.2 21.7 207 31-258 1-218 (220)
60 PRK10253 iron-enterobactin tra 100.0 7.3E-47 1.6E-51 350.9 23.7 219 25-263 2-233 (265)
61 cd03301 ABC_MalK_N The N-termi 100.0 3.8E-47 8.2E-52 341.5 21.0 204 31-256 1-213 (213)
62 PRK13634 cbiO cobalt transport 100.0 1.2E-46 2.7E-51 353.6 25.3 223 30-264 2-236 (290)
63 TIGR01188 drrA daunorubicin re 100.0 4.5E-47 9.7E-52 358.7 22.2 201 51-264 5-214 (302)
64 cd03268 ABC_BcrA_bacitracin_re 100.0 7.2E-47 1.6E-51 338.6 22.2 203 31-256 1-208 (208)
65 PRK13636 cbiO cobalt transport 100.0 1.4E-46 3E-51 352.2 24.9 218 29-263 4-231 (283)
66 PRK10575 iron-hydroxamate tran 100.0 9.7E-47 2.1E-51 350.1 23.6 217 27-263 8-237 (265)
67 PRK11300 livG leucine/isoleuci 100.0 1.2E-46 2.6E-51 347.4 24.0 216 29-263 4-243 (255)
68 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1E-46 2.3E-51 345.3 23.4 214 31-263 1-225 (242)
69 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-46 2.6E-51 343.6 23.8 213 30-264 1-222 (236)
70 PRK13643 cbiO cobalt transport 100.0 1.8E-46 3.9E-51 352.2 25.4 222 30-263 1-233 (288)
71 PRK10070 glycine betaine trans 100.0 1.4E-46 3E-51 365.6 24.9 231 29-266 3-257 (400)
72 PRK09493 glnQ glutamine ABC tr 100.0 1.6E-46 3.4E-51 343.6 23.9 216 30-264 1-226 (240)
73 PRK13650 cbiO cobalt transport 100.0 1.7E-46 3.7E-51 350.9 24.1 218 29-264 3-230 (279)
74 COG4598 HisP ABC-type histidin 100.0 6.4E-47 1.4E-51 320.0 19.0 228 29-268 5-246 (256)
75 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-46 2.9E-51 340.0 22.5 212 31-262 1-220 (222)
76 cd03266 ABC_NatA_sodium_export 100.0 9.3E-47 2E-51 340.1 21.3 209 30-256 1-218 (218)
77 PRK13548 hmuV hemin importer A 100.0 3E-46 6.6E-51 345.5 25.2 214 30-263 2-230 (258)
78 cd03226 ABC_cobalt_CbiO_domain 100.0 9.5E-47 2.1E-51 337.1 21.0 199 32-253 1-205 (205)
79 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 7.8E-47 1.7E-51 340.6 20.6 209 31-252 1-218 (218)
80 PRK13646 cbiO cobalt transport 100.0 3.1E-46 6.6E-51 350.4 25.3 223 30-264 2-236 (286)
81 TIGR01186 proV glycine betaine 100.0 8.7E-47 1.9E-51 362.9 22.0 210 50-266 4-222 (363)
82 cd03218 ABC_YhbG The ABC trans 100.0 1.5E-46 3.2E-51 342.0 22.4 213 31-263 1-222 (232)
83 TIGR03410 urea_trans_UrtE urea 100.0 2.1E-46 4.6E-51 340.6 23.4 213 31-262 1-220 (230)
84 PRK11264 putative amino-acid A 100.0 3.9E-46 8.4E-51 343.0 25.3 222 30-264 3-234 (250)
85 COG4175 ProV ABC-type proline/ 100.0 1.3E-46 2.8E-51 342.9 21.6 235 29-270 3-261 (386)
86 COG0410 LivF ABC-type branched 100.0 2.4E-46 5.3E-51 329.5 22.6 218 29-265 2-228 (237)
87 TIGR03411 urea_trans_UrtD urea 100.0 2.7E-46 5.8E-51 342.5 23.7 213 30-263 2-231 (242)
88 PRK13652 cbiO cobalt transport 100.0 4.6E-46 1E-50 347.7 25.7 216 29-263 2-227 (277)
89 PRK11629 lolD lipoprotein tran 100.0 2.2E-46 4.9E-51 341.2 23.0 215 29-257 4-228 (233)
90 cd03263 ABC_subfamily_A The AB 100.0 1.3E-46 2.7E-51 339.7 21.1 210 31-261 1-219 (220)
91 PRK15112 antimicrobial peptide 100.0 3.3E-46 7.1E-51 346.9 24.4 226 29-265 3-241 (267)
92 cd03260 ABC_PstB_phosphate_tra 100.0 1.5E-46 3.2E-51 340.9 21.5 209 31-260 1-226 (227)
93 PRK14273 phosphate ABC transpo 100.0 3.8E-46 8.2E-51 344.0 24.6 223 24-267 1-242 (254)
94 PRK11614 livF leucine/isoleuci 100.0 2.4E-46 5.1E-51 341.9 22.8 215 29-263 4-226 (237)
95 PRK13651 cobalt transporter AT 100.0 3.2E-46 6.9E-51 352.7 24.3 230 30-264 2-255 (305)
96 PRK10895 lipopolysaccharide AB 100.0 4.1E-46 8.9E-51 341.1 24.3 214 30-263 3-226 (241)
97 PRK13631 cbiO cobalt transport 100.0 4.3E-46 9.3E-51 353.9 25.1 231 28-264 19-266 (320)
98 PRK13638 cbiO cobalt transport 100.0 3.3E-46 7.2E-51 347.6 23.5 215 30-263 1-225 (271)
99 TIGR02673 FtsE cell division A 100.0 1.7E-46 3.7E-51 337.5 20.6 205 30-251 1-214 (214)
100 PRK13635 cbiO cobalt transport 100.0 7E-46 1.5E-50 346.7 25.4 216 29-263 4-229 (279)
101 TIGR03005 ectoine_ehuA ectoine 100.0 3.9E-46 8.5E-51 343.5 23.2 224 31-265 1-238 (252)
102 PRK11231 fecE iron-dicitrate t 100.0 4.3E-46 9.3E-51 343.9 23.3 213 30-263 2-227 (255)
103 PRK14242 phosphate transporter 100.0 9E-46 2E-50 341.2 25.1 218 27-265 3-239 (253)
104 PRK11144 modC molybdate transp 100.0 5.6E-46 1.2E-50 357.8 24.7 218 30-266 1-221 (352)
105 PRK13648 cbiO cobalt transport 100.0 6.9E-46 1.5E-50 345.1 24.5 219 26-263 3-231 (269)
106 TIGR00972 3a0107s01c2 phosphat 100.0 9.5E-46 2E-50 340.0 25.0 214 30-264 1-233 (247)
107 PRK10744 pstB phosphate transp 100.0 1.2E-45 2.5E-50 341.9 25.8 223 22-265 5-246 (260)
108 PRK11248 tauB taurine transpor 100.0 4.5E-46 9.8E-51 343.7 22.9 205 30-259 1-216 (255)
109 COG1137 YhbG ABC-type (unclass 100.0 2.3E-47 4.9E-52 327.8 13.2 218 29-266 3-231 (243)
110 PRK13641 cbiO cobalt transport 100.0 7.1E-46 1.5E-50 348.1 24.6 222 30-263 2-234 (287)
111 TIGR02769 nickel_nikE nickel i 100.0 5E-46 1.1E-50 345.3 23.0 226 30-263 2-240 (265)
112 COG4604 CeuD ABC-type enteroch 100.0 5.2E-47 1.1E-51 324.9 15.0 218 30-267 1-229 (252)
113 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.6E-46 5.6E-51 347.9 21.0 218 32-265 26-252 (269)
114 cd03257 ABC_NikE_OppD_transpor 100.0 7.2E-46 1.6E-50 336.3 23.3 214 30-256 1-228 (228)
115 PRK09984 phosphonate/organopho 100.0 7.2E-46 1.6E-50 343.6 23.5 218 29-261 3-240 (262)
116 PRK11701 phnK phosphonate C-P 100.0 9E-46 2E-50 342.3 24.0 221 29-265 5-243 (258)
117 cd03269 ABC_putative_ATPase Th 100.0 4E-46 8.6E-51 334.3 20.8 200 31-255 1-209 (210)
118 PRK14247 phosphate ABC transpo 100.0 1.2E-45 2.7E-50 339.7 24.5 213 30-264 3-235 (250)
119 PRK10619 histidine/lysine/argi 100.0 1E-45 2.3E-50 341.6 24.0 223 29-263 4-241 (257)
120 PRK13644 cbiO cobalt transport 100.0 9.6E-46 2.1E-50 345.0 23.7 215 30-264 1-225 (274)
121 PRK10771 thiQ thiamine transpo 100.0 1.7E-45 3.7E-50 335.2 24.5 211 30-264 1-220 (232)
122 PRK13633 cobalt transporter AT 100.0 1.4E-45 3E-50 345.0 24.5 222 29-264 3-234 (280)
123 cd03225 ABC_cobalt_CbiO_domain 100.0 5.9E-46 1.3E-50 333.3 21.2 201 32-251 1-211 (211)
124 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.1E-46 1.8E-50 332.5 22.0 201 31-255 1-210 (211)
125 PRK10584 putative ABC transpor 100.0 1.2E-45 2.5E-50 335.3 22.9 213 29-255 5-227 (228)
126 PRK13639 cbiO cobalt transport 100.0 1.2E-45 2.7E-50 344.4 23.7 216 30-263 1-226 (275)
127 cd03235 ABC_Metallic_Cations A 100.0 4.3E-46 9.3E-51 334.7 19.9 197 32-255 1-212 (213)
128 PRK14267 phosphate ABC transpo 100.0 1.6E-45 3.4E-50 339.6 24.1 216 29-264 3-238 (253)
129 PRK14268 phosphate ABC transpo 100.0 2.4E-45 5.1E-50 339.5 24.8 217 28-265 10-244 (258)
130 PRK10908 cell division protein 100.0 2E-45 4.3E-50 332.5 23.8 208 30-254 1-217 (222)
131 PRK11124 artP arginine transpo 100.0 1.6E-45 3.5E-50 337.4 23.5 218 30-262 2-229 (242)
132 TIGR02211 LolD_lipo_ex lipopro 100.0 1.8E-45 3.9E-50 332.5 23.1 210 30-253 1-220 (221)
133 PRK13632 cbiO cobalt transport 100.0 3E-45 6.6E-50 341.1 24.9 217 28-263 5-231 (271)
134 cd03292 ABC_FtsE_transporter F 100.0 7.6E-46 1.6E-50 333.2 20.1 205 31-252 1-214 (214)
135 PRK13640 cbiO cobalt transport 100.0 3.9E-45 8.5E-50 342.2 25.5 217 29-264 4-233 (282)
136 PRK14235 phosphate transporter 100.0 3.9E-45 8.3E-50 339.7 25.1 218 27-264 16-252 (267)
137 cd03264 ABC_drug_resistance_li 100.0 1.3E-45 2.9E-50 331.1 21.3 202 31-256 1-211 (211)
138 COG1123 ATPase components of v 100.0 9.5E-46 2.1E-50 363.7 21.8 233 29-273 4-254 (539)
139 TIGR02323 CP_lyasePhnK phospho 100.0 2.8E-45 6E-50 338.0 23.6 221 29-265 2-240 (253)
140 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-45 2.3E-50 332.0 20.2 203 31-252 1-213 (213)
141 PRK13547 hmuV hemin importer A 100.0 3.6E-45 7.9E-50 340.5 24.2 214 30-263 1-244 (272)
142 PRK10418 nikD nickel transport 100.0 6.7E-45 1.4E-49 335.7 25.7 213 30-265 4-232 (254)
143 PRK14269 phosphate ABC transpo 100.0 4E-45 8.7E-50 335.6 24.1 212 30-264 2-231 (246)
144 PRK13645 cbiO cobalt transport 100.0 3.9E-45 8.5E-50 343.4 24.6 225 29-263 5-240 (289)
145 PRK09544 znuC high-affinity zi 100.0 4.3E-45 9.2E-50 336.3 24.3 203 29-263 3-209 (251)
146 PRK13649 cbiO cobalt transport 100.0 4.4E-45 9.6E-50 341.6 24.7 221 30-263 2-234 (280)
147 TIGR01978 sufC FeS assembly AT 100.0 2.4E-45 5.2E-50 336.2 22.4 212 31-262 1-233 (243)
148 TIGR03415 ABC_choXWV_ATP choli 100.0 1.6E-45 3.4E-50 355.9 22.2 212 50-265 35-256 (382)
149 PRK14248 phosphate ABC transpo 100.0 6E-45 1.3E-49 338.6 25.3 218 27-265 18-254 (268)
150 TIGR03873 F420-0_ABC_ATP propo 100.0 3.6E-45 7.8E-50 337.9 23.5 212 31-263 2-226 (256)
151 TIGR03740 galliderm_ABC gallid 100.0 3.6E-45 7.9E-50 331.1 22.9 205 31-260 1-210 (223)
152 COG4559 ABC-type hemin transpo 100.0 2.1E-45 4.6E-50 318.3 20.2 215 30-265 1-232 (259)
153 PRK14274 phosphate ABC transpo 100.0 6.8E-45 1.5E-49 336.6 24.9 218 28-265 10-245 (259)
154 PRK14245 phosphate ABC transpo 100.0 4.3E-45 9.2E-50 336.2 23.4 217 29-266 2-237 (250)
155 cd03252 ABCC_Hemolysin The ABC 100.0 5.3E-45 1.1E-49 332.9 23.3 212 31-264 1-226 (237)
156 cd03300 ABC_PotA_N PotA is an 100.0 4.6E-45 9.9E-50 332.4 22.8 212 31-264 1-221 (232)
157 PRK10247 putative ABC transpor 100.0 5.9E-45 1.3E-49 330.3 23.4 211 25-257 2-221 (225)
158 PRK13642 cbiO cobalt transport 100.0 9E-45 1.9E-49 339.0 24.9 217 29-263 3-229 (277)
159 PRK14259 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 336.8 25.5 217 28-265 11-255 (269)
160 PRK14270 phosphate ABC transpo 100.0 1.5E-44 3.3E-49 332.7 25.2 217 29-266 3-238 (251)
161 TIGR01277 thiQ thiamine ABC tr 100.0 6.9E-45 1.5E-49 327.1 22.3 203 31-257 1-212 (213)
162 PRK10261 glutathione transport 100.0 5.7E-45 1.2E-49 374.9 24.6 234 28-269 311-559 (623)
163 PRK14251 phosphate ABC transpo 100.0 9.8E-45 2.1E-49 333.9 23.5 217 29-266 3-238 (251)
164 PRK15439 autoinducer 2 ABC tra 100.0 9.9E-45 2.1E-49 365.6 25.6 215 29-263 10-229 (510)
165 PRK14239 phosphate transporter 100.0 1.6E-44 3.4E-49 332.7 24.5 217 29-266 4-239 (252)
166 PRK14258 phosphate ABC transpo 100.0 1.6E-44 3.5E-49 334.5 24.8 220 28-266 5-248 (261)
167 TIGR02142 modC_ABC molybdenum 100.0 9.2E-45 2E-49 349.8 23.8 214 35-266 4-224 (354)
168 PRK14237 phosphate transporter 100.0 2.3E-44 5E-49 334.5 25.3 221 24-265 14-253 (267)
169 PRK14241 phosphate transporter 100.0 1.5E-44 3.3E-49 334.1 23.7 215 30-264 4-243 (258)
170 PRK09700 D-allose transporter 100.0 6.8E-45 1.5E-49 367.0 23.2 215 29-263 4-234 (510)
171 PRK10419 nikE nickel transport 100.0 1.2E-44 2.6E-49 336.6 23.0 227 29-263 2-241 (268)
172 PRK10762 D-ribose transporter 100.0 8.2E-45 1.8E-49 365.6 23.4 214 29-262 3-229 (501)
173 PRK14256 phosphate ABC transpo 100.0 2.7E-44 5.9E-49 331.2 24.5 217 30-266 4-239 (252)
174 TIGR00968 3a0106s01 sulfate AB 100.0 2.3E-44 5E-49 328.9 23.8 212 31-264 1-221 (237)
175 cd03299 ABC_ModC_like Archeal 100.0 1.7E-44 3.6E-49 329.4 22.7 211 31-264 1-220 (235)
176 cd03245 ABCC_bacteriocin_expor 100.0 1.6E-44 3.5E-49 326.0 22.2 203 31-255 3-219 (220)
177 cd03297 ABC_ModC_molybdenum_tr 100.0 1.2E-44 2.5E-49 325.7 21.1 206 31-256 2-214 (214)
178 PRK14249 phosphate ABC transpo 100.0 4.3E-44 9.4E-49 329.7 25.3 217 29-266 3-238 (251)
179 PRK14240 phosphate transporter 100.0 3.6E-44 7.8E-49 330.0 24.7 214 30-264 3-235 (250)
180 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3E-44 6.5E-49 328.1 24.0 212 31-263 1-226 (238)
181 PRK14253 phosphate ABC transpo 100.0 3.2E-44 7E-49 330.1 24.3 213 30-264 3-234 (249)
182 cd03267 ABC_NatA_like Similar 100.0 1.7E-44 3.6E-49 329.6 22.1 195 50-256 32-236 (236)
183 PRK14262 phosphate ABC transpo 100.0 3.1E-44 6.6E-49 330.5 23.9 215 29-264 2-235 (250)
184 PRK14236 phosphate transporter 100.0 4.3E-44 9.2E-49 333.6 25.2 220 24-264 19-257 (272)
185 cd03254 ABCC_Glucan_exporter_l 100.0 2.6E-44 5.6E-49 326.6 23.1 211 30-263 2-226 (229)
186 PRK14246 phosphate ABC transpo 100.0 3.4E-44 7.3E-49 331.6 24.1 224 28-267 8-245 (257)
187 PRK13549 xylose transporter AT 100.0 1.4E-44 3.1E-49 364.3 23.4 215 29-263 4-232 (506)
188 cd03214 ABC_Iron-Siderophores_ 100.0 1.9E-44 4.2E-49 316.0 21.1 177 32-255 1-179 (180)
189 COG4181 Predicted ABC-type tra 100.0 6.9E-45 1.5E-49 305.4 17.2 214 29-255 5-227 (228)
190 PRK14275 phosphate ABC transpo 100.0 2.8E-44 6.1E-49 337.0 23.5 218 27-265 36-272 (286)
191 PRK14254 phosphate ABC transpo 100.0 4.9E-44 1.1E-48 335.2 24.9 217 27-264 36-270 (285)
192 PRK14265 phosphate ABC transpo 100.0 5.3E-44 1.1E-48 333.3 25.0 219 27-266 17-261 (274)
193 PRK15056 manganese/iron transp 100.0 2.5E-44 5.3E-49 335.2 22.6 210 30-263 6-230 (272)
194 PRK14243 phosphate transporter 100.0 4.1E-44 8.9E-49 332.3 24.0 218 28-266 8-251 (264)
195 cd03251 ABCC_MsbA MsbA is an e 100.0 5.4E-44 1.2E-48 325.5 24.3 212 31-264 1-226 (234)
196 PRK14238 phosphate transporter 100.0 5.5E-44 1.2E-48 332.6 24.8 218 27-265 21-257 (271)
197 CHL00131 ycf16 sulfate ABC tra 100.0 4.6E-44 9.9E-49 329.6 24.0 216 24-260 1-238 (252)
198 PRK14271 phosphate ABC transpo 100.0 6.8E-44 1.5E-48 332.8 25.3 217 28-266 19-254 (276)
199 PRK10261 glutathione transport 100.0 2E-44 4.3E-49 370.9 23.8 233 28-265 10-260 (623)
200 PRK14272 phosphate ABC transpo 100.0 4.8E-44 1E-48 329.5 23.1 215 30-264 4-237 (252)
201 PRK10938 putative molybdenum t 100.0 2.8E-44 6.1E-49 360.9 23.2 212 30-263 3-224 (490)
202 COG2274 SunT ABC-type bacterio 100.0 2.4E-44 5.3E-49 369.7 22.9 216 28-264 469-697 (709)
203 PRK14244 phosphate ABC transpo 100.0 4.2E-44 9E-49 329.8 22.0 215 31-265 6-239 (251)
204 PRK14255 phosphate ABC transpo 100.0 1.1E-43 2.4E-48 327.1 24.6 217 28-265 3-238 (252)
205 PRK14261 phosphate ABC transpo 100.0 9.3E-44 2E-48 327.9 23.9 217 28-265 4-239 (253)
206 PRK15134 microcin C ABC transp 100.0 5E-44 1.1E-48 362.1 23.9 223 29-264 4-247 (529)
207 cd03253 ABCC_ATM1_transporter 100.0 1.8E-43 3.9E-48 322.5 24.2 210 31-263 1-224 (236)
208 PRK14257 phosphate ABC transpo 100.0 1.4E-43 2.9E-48 337.9 24.1 221 28-267 78-317 (329)
209 PRK14260 phosphate ABC transpo 100.0 1.5E-43 3.3E-48 327.6 23.8 215 29-264 6-244 (259)
210 PRK15134 microcin C ABC transp 100.0 5.9E-44 1.3E-48 361.6 22.8 229 28-265 273-517 (529)
211 PRK13543 cytochrome c biogenes 100.0 1.3E-43 2.8E-48 319.1 22.4 201 25-249 6-212 (214)
212 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.6E-43 3.4E-48 329.5 23.7 211 31-264 3-226 (275)
213 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.1E-43 4.6E-48 316.0 23.3 202 29-257 5-206 (207)
214 cd03244 ABCC_MRP_domain2 Domai 100.0 1.4E-43 3.1E-48 320.0 22.4 205 31-257 3-220 (221)
215 COG1129 MglA ABC-type sugar tr 100.0 1E-43 2.2E-48 347.1 22.6 217 28-264 6-236 (500)
216 TIGR03269 met_CoM_red_A2 methy 100.0 1.6E-43 3.4E-48 357.8 24.3 227 28-263 277-517 (520)
217 cd03230 ABC_DR_subfamily_A Thi 100.0 1.1E-43 2.3E-48 309.3 20.0 173 31-252 1-173 (173)
218 PRK11288 araG L-arabinose tran 100.0 1.8E-43 3.9E-48 355.9 24.5 209 29-257 3-223 (501)
219 PRK13538 cytochrome c biogenes 100.0 1.3E-43 2.8E-48 316.8 20.8 196 30-247 1-202 (204)
220 cd03229 ABC_Class3 This class 100.0 1.4E-43 2.9E-48 310.1 20.3 178 31-251 1-178 (178)
221 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1E-43 2.2E-48 322.0 19.6 193 31-256 23-224 (224)
222 PRK09580 sufC cysteine desulfu 100.0 4.3E-43 9.3E-48 322.3 24.0 212 30-261 1-233 (248)
223 cd03216 ABC_Carb_Monos_I This 100.0 2E-43 4.3E-48 304.8 20.3 162 31-254 1-162 (163)
224 TIGR02770 nickel_nikD nickel i 100.0 1.9E-43 4E-48 321.4 21.1 198 54-264 1-216 (230)
225 PRK14263 phosphate ABC transpo 100.0 5.6E-43 1.2E-47 324.1 24.5 217 27-264 5-246 (261)
226 TIGR01184 ntrCD nitrate transp 100.0 1.8E-43 4E-48 321.5 20.8 191 55-261 1-202 (230)
227 COG4586 ABC-type uncharacteriz 100.0 4.2E-44 9.2E-49 320.7 16.2 223 30-264 3-247 (325)
228 TIGR02982 heterocyst_DevA ABC 100.0 1.8E-43 3.9E-48 319.4 20.6 208 31-252 2-219 (220)
229 cd03246 ABCC_Protease_Secretio 100.0 2.5E-43 5.3E-48 307.1 20.2 173 31-252 1-173 (173)
230 cd03233 ABC_PDR_domain1 The pl 100.0 3.1E-43 6.8E-48 313.9 21.3 196 30-256 3-202 (202)
231 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-43 5.3E-48 354.9 23.0 212 30-261 1-228 (500)
232 PRK14264 phosphate ABC transpo 100.0 6.7E-43 1.5E-47 330.5 24.6 216 28-264 43-290 (305)
233 cd03231 ABC_CcmA_heme_exporter 100.0 4E-43 8.7E-48 312.9 21.7 195 31-247 1-198 (201)
234 PRK13549 xylose transporter AT 100.0 1.5E-43 3.3E-48 356.8 21.2 217 28-261 257-492 (506)
235 PRK10982 galactose/methyl gala 100.0 2.5E-43 5.5E-48 354.0 22.5 210 33-262 1-222 (491)
236 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.4E-43 9.6E-48 312.4 21.2 187 31-259 1-190 (200)
237 COG4172 ABC-type uncharacteriz 100.0 2.2E-43 4.8E-48 330.4 20.1 236 27-271 273-524 (534)
238 cd03248 ABCC_TAP TAP, the Tran 100.0 5.2E-43 1.1E-47 317.5 21.7 204 28-252 9-226 (226)
239 PRK14252 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 322.9 24.2 219 28-265 14-251 (265)
240 COG4987 CydC ABC-type transpor 100.0 2.8E-43 6E-48 340.6 20.8 214 30-264 336-562 (573)
241 PRK14266 phosphate ABC transpo 100.0 1.1E-42 2.5E-47 320.0 23.9 216 30-265 3-236 (250)
242 TIGR03269 met_CoM_red_A2 methy 100.0 4.2E-43 9.1E-48 354.8 23.0 224 31-263 1-258 (520)
243 cd03234 ABCG_White The White s 100.0 5.4E-43 1.2E-47 317.5 21.1 207 30-256 3-226 (226)
244 PRK09700 D-allose transporter 100.0 3.3E-43 7.2E-48 354.7 21.7 209 28-258 263-493 (510)
245 COG4525 TauB ABC-type taurine 100.0 4.3E-43 9.3E-48 300.3 18.8 208 29-259 2-220 (259)
246 cd03215 ABC_Carb_Monos_II This 100.0 5.9E-43 1.3E-47 307.1 20.2 177 29-252 3-182 (182)
247 PRK03695 vitamin B12-transport 100.0 8.4E-43 1.8E-47 320.7 22.1 197 54-263 11-222 (248)
248 COG4988 CydD ABC-type transpor 100.0 7E-43 1.5E-47 342.3 22.7 214 30-265 320-545 (559)
249 cd03247 ABCC_cytochrome_bd The 100.0 6E-43 1.3E-47 306.0 19.9 178 31-256 1-178 (178)
250 TIGR03608 L_ocin_972_ABC putat 100.0 4.1E-43 8.8E-48 313.6 19.0 197 33-247 1-206 (206)
251 cd03213 ABCG_EPDR ABCG transpo 100.0 9.1E-43 2E-47 309.0 20.4 188 30-255 3-193 (194)
252 PRK13539 cytochrome c biogenes 100.0 2.2E-42 4.7E-47 309.6 22.4 194 30-249 2-200 (207)
253 cd03288 ABCC_SUR2 The SUR doma 100.0 3.5E-42 7.7E-47 318.1 24.6 214 28-263 17-243 (257)
254 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.1E-42 4.6E-47 360.3 25.9 211 30-264 451-674 (686)
255 KOG0058 Peptide exporter, ABC 100.0 7.4E-43 1.6E-47 348.3 21.4 217 29-265 464-693 (716)
256 PRK11174 cysteine/glutathione 100.0 2E-42 4.4E-47 354.7 24.9 212 30-264 349-573 (588)
257 TIGR02633 xylG D-xylose ABC tr 100.0 8.7E-43 1.9E-47 350.9 21.1 216 28-260 255-489 (500)
258 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.3E-42 5.1E-47 361.3 24.4 213 29-264 476-701 (710)
259 cd03232 ABC_PDR_domain2 The pl 100.0 2.3E-42 5.1E-47 305.9 20.3 186 30-256 3-192 (192)
260 COG4161 ArtP ABC-type arginine 100.0 1.6E-42 3.4E-47 288.8 17.9 219 30-263 2-230 (242)
261 PRK13546 teichoic acids export 100.0 5.7E-42 1.2E-46 317.6 23.6 210 30-264 4-233 (264)
262 PRK11176 lipid transporter ATP 100.0 3.6E-42 7.8E-47 352.4 24.3 214 30-264 341-568 (582)
263 TIGR01257 rim_protein retinal- 100.0 3.3E-42 7.1E-47 381.7 25.7 218 27-264 1934-2160(2272)
264 PRK11160 cysteine/glutathione 100.0 4.9E-42 1.1E-46 350.6 24.3 215 29-264 337-563 (574)
265 TIGR03375 type_I_sec_LssB type 100.0 6.7E-42 1.5E-46 357.0 25.6 214 29-263 462-688 (694)
266 PRK13540 cytochrome c biogenes 100.0 3.6E-42 7.9E-47 306.5 20.2 193 30-245 1-197 (200)
267 PRK15064 ABC transporter ATP-b 100.0 1.2E-41 2.7E-46 344.8 25.9 210 30-263 1-242 (530)
268 COG4619 ABC-type uncharacteriz 100.0 1.2E-42 2.6E-47 291.0 15.1 203 30-252 3-212 (223)
269 COG3845 ABC-type uncharacteriz 100.0 4.2E-42 9E-47 330.1 20.5 209 29-257 3-223 (501)
270 PRK13545 tagH teichoic acids e 100.0 1.6E-41 3.4E-46 335.1 25.2 206 28-264 19-233 (549)
271 PRK11819 putative ABC transpor 100.0 2E-41 4.3E-46 344.9 26.6 202 29-264 5-251 (556)
272 PRK15064 ABC transporter ATP-b 100.0 7.6E-42 1.6E-46 346.3 23.5 200 29-263 318-525 (530)
273 PRK10790 putative multidrug tr 100.0 1.3E-41 2.8E-46 349.0 25.4 212 30-264 340-564 (592)
274 TIGR01189 ccmA heme ABC export 100.0 7.7E-42 1.7E-46 303.9 20.6 192 31-246 1-197 (198)
275 PRK10938 putative molybdenum t 100.0 3.5E-42 7.6E-47 345.7 20.7 210 28-256 258-485 (490)
276 cd03228 ABCC_MRP_Like The MRP 100.0 5.5E-42 1.2E-46 298.0 19.0 171 31-251 1-171 (171)
277 TIGR02324 CP_lyasePhnL phospho 100.0 9.2E-42 2E-46 308.9 21.0 208 30-248 1-223 (224)
278 KOG0057 Mitochondrial Fe/S clu 100.0 6E-42 1.3E-46 331.7 20.9 212 29-263 350-574 (591)
279 cd03250 ABCC_MRP_domain1 Domai 100.0 1.2E-41 2.5E-46 304.1 21.0 187 31-251 1-204 (204)
280 KOG0055 Multidrug/pheromone ex 100.0 7.7E-42 1.7E-46 358.0 22.3 217 29-265 349-578 (1228)
281 PRK11288 araG L-arabinose tran 100.0 9.7E-42 2.1E-46 343.3 21.6 210 29-262 256-484 (501)
282 COG1132 MdlB ABC-type multidru 100.0 2.2E-41 4.9E-46 345.5 24.4 213 30-264 328-553 (567)
283 PRK15439 autoinducer 2 ABC tra 100.0 8.7E-42 1.9E-46 344.2 20.8 211 28-263 266-492 (510)
284 cd03290 ABCC_SUR1_N The SUR do 100.0 3.1E-41 6.7E-46 304.3 22.2 202 32-251 2-218 (218)
285 TIGR00958 3a01208 Conjugate Tr 100.0 2.2E-41 4.7E-46 353.4 24.3 214 29-264 477-703 (711)
286 PRK13657 cyclic beta-1,2-gluca 100.0 5.1E-41 1.1E-45 344.3 26.5 213 30-264 334-559 (588)
287 TIGR01193 bacteriocin_ABC ABC- 100.0 2.4E-41 5.1E-46 353.6 24.5 212 30-264 473-698 (708)
288 PRK10762 D-ribose transporter 100.0 1.3E-41 2.8E-46 342.4 21.0 209 29-262 256-483 (501)
289 COG1119 ModF ABC-type molybden 100.0 8.8E-42 1.9E-46 302.9 17.3 212 27-257 28-256 (257)
290 COG4172 ABC-type uncharacteriz 100.0 1.8E-41 3.9E-46 317.6 20.3 234 28-273 4-257 (534)
291 PRK10982 galactose/methyl gala 100.0 1.5E-41 3.3E-46 341.1 21.4 212 28-261 248-478 (491)
292 TIGR01257 rim_protein retinal- 100.0 2E-41 4.3E-46 375.6 24.2 216 28-264 926-1150(2272)
293 TIGR01842 type_I_sec_PrtD type 100.0 6E-41 1.3E-45 340.8 25.1 214 29-262 315-541 (544)
294 TIGR01846 type_I_sec_HlyB type 100.0 7.1E-41 1.5E-45 349.2 25.1 215 29-264 454-681 (694)
295 cd03223 ABCD_peroxisomal_ALDP 100.0 4E-41 8.6E-46 291.3 19.3 164 31-251 1-164 (166)
296 TIGR01192 chvA glucan exporter 100.0 1E-40 2.2E-45 341.5 25.2 213 30-264 334-559 (585)
297 PRK10789 putative multidrug tr 100.0 9.6E-41 2.1E-45 340.9 25.0 214 30-264 313-539 (569)
298 PRK10636 putative ABC transpor 100.0 1E-40 2.2E-45 343.9 25.3 214 30-263 1-236 (638)
299 PRK10636 putative ABC transpor 100.0 5.8E-41 1.3E-45 345.7 22.7 202 28-262 310-516 (638)
300 cd03237 ABC_RNaseL_inhibitor_d 100.0 7.1E-41 1.5E-45 307.3 20.7 188 52-262 7-206 (246)
301 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-40 2.3E-45 340.8 24.1 214 30-264 330-557 (571)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-40 4.4E-45 337.3 25.1 202 29-264 3-249 (552)
303 COG4148 ModC ABC-type molybdat 100.0 1.7E-41 3.7E-46 304.7 14.9 205 53-265 13-220 (352)
304 TIGR02204 MsbA_rel ABC transpo 100.0 2E-40 4.4E-45 339.1 24.4 214 30-263 337-563 (576)
305 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.6E-40 1.2E-44 306.7 25.2 198 27-263 36-247 (282)
306 PRK11147 ABC transporter ATPas 100.0 4.3E-40 9.3E-45 339.6 26.8 222 30-264 3-244 (635)
307 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1E-40 2.2E-45 282.1 18.1 144 31-251 1-144 (144)
308 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-40 2.5E-45 301.8 19.4 186 60-263 1-201 (223)
309 TIGR01166 cbiO cobalt transpor 100.0 1.3E-40 2.9E-45 294.0 17.9 177 51-237 4-190 (190)
310 PRK11819 putative ABC transpor 100.0 6.6E-40 1.4E-44 333.7 25.1 202 28-264 322-534 (556)
311 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.1E-40 1.3E-44 333.7 24.6 201 28-263 320-531 (552)
312 PLN03073 ABC transporter F fam 100.0 6E-40 1.3E-44 340.2 24.3 200 29-262 507-713 (718)
313 PRK10522 multidrug transporter 100.0 4.9E-40 1.1E-44 334.2 23.1 202 30-255 322-530 (547)
314 PRK13541 cytochrome c biogenes 100.0 3.7E-40 8.1E-45 292.4 19.3 188 30-244 1-192 (195)
315 COG0488 Uup ATPase components 100.0 9.7E-40 2.1E-44 326.0 24.2 211 29-264 2-241 (530)
316 cd03222 ABC_RNaseL_inhibitor T 100.0 3.5E-40 7.7E-45 287.4 18.5 158 34-263 4-163 (177)
317 PRK13409 putative ATPase RIL; 100.0 5.4E-40 1.2E-44 334.7 22.1 195 28-257 338-536 (590)
318 PRK15177 Vi polysaccharide exp 100.0 1.4E-39 3E-44 292.7 20.9 185 53-263 1-192 (213)
319 COG4107 PhnK ABC-type phosphon 100.0 5E-40 1.1E-44 276.9 16.7 233 28-271 4-249 (258)
320 TIGR01187 potA spermidine/putr 100.0 6.8E-40 1.5E-44 312.4 19.7 184 70-266 1-193 (325)
321 PRK11147 ABC transporter ATPas 100.0 1.2E-39 2.5E-44 336.4 23.0 200 28-262 317-527 (635)
322 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.7E-39 3.8E-44 330.6 23.5 208 29-255 336-551 (555)
323 PLN03211 ABC transporter G-25; 100.0 5.6E-40 1.2E-44 338.4 20.1 197 51-263 80-296 (659)
324 PTZ00265 multidrug resistance 100.0 1.4E-39 3.1E-44 358.9 24.4 216 30-263 1165-1452(1466)
325 cd03236 ABC_RNaseL_inhibitor_d 100.0 7.2E-40 1.6E-44 301.9 17.8 199 34-254 4-218 (255)
326 COG4167 SapF ABC-type antimicr 100.0 8.9E-40 1.9E-44 277.3 16.6 233 29-272 3-248 (267)
327 PLN03232 ABC transporter C fam 100.0 8E-39 1.7E-43 355.2 27.8 214 30-265 1234-1460(1495)
328 TIGR02857 CydD thiol reductant 100.0 4.3E-39 9.4E-44 326.2 22.5 197 30-247 320-529 (529)
329 COG4674 Uncharacterized ABC-ty 100.0 1.8E-39 3.8E-44 278.1 15.9 217 29-266 4-238 (249)
330 PLN03130 ABC transporter C fam 100.0 8.8E-39 1.9E-43 355.6 25.6 213 30-264 1237-1462(1622)
331 PRK10535 macrolide transporter 100.0 7.7E-39 1.7E-43 330.7 23.2 220 29-262 3-231 (648)
332 PTZ00265 multidrug resistance 100.0 7.1E-39 1.5E-43 353.4 23.7 203 30-250 382-655 (1466)
333 KOG2355 Predicted ABC-type tra 100.0 1.2E-38 2.7E-43 274.9 18.7 248 28-284 11-259 (291)
334 TIGR02868 CydC thiol reductant 100.0 9.1E-39 2E-43 323.8 21.0 183 30-234 334-529 (529)
335 KOG0055 Multidrug/pheromone ex 100.0 1.1E-38 2.4E-43 334.4 22.0 215 30-264 987-1214(1228)
336 PTZ00243 ABC transporter; Prov 100.0 4.5E-38 9.8E-43 349.4 26.5 213 30-264 1308-1534(1560)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.3E-38 5E-43 271.3 18.6 156 33-251 2-157 (157)
338 TIGR00957 MRP_assoc_pro multi 100.0 3.3E-38 7.1E-43 350.8 24.8 213 30-264 1284-1509(1522)
339 cd03238 ABC_UvrA The excision 100.0 2.6E-38 5.6E-43 275.4 18.1 156 51-253 7-167 (176)
340 COG4618 ArpD ABC-type protease 100.0 6.8E-38 1.5E-42 301.0 21.8 218 27-264 331-561 (580)
341 COG1101 PhnK ABC-type uncharac 100.0 3E-38 6.5E-43 274.4 16.8 216 30-260 1-235 (263)
342 PLN03073 ABC transporter F fam 100.0 1.7E-37 3.7E-42 321.9 25.6 221 28-263 175-431 (718)
343 COG1134 TagH ABC-type polysacc 100.0 1.5E-37 3.3E-42 276.2 21.0 212 29-264 2-237 (249)
344 TIGR01271 CFTR_protein cystic 100.0 5.7E-37 1.2E-41 340.1 26.2 211 30-263 1217-1440(1490)
345 PRK13409 putative ATPase RIL; 100.0 1.3E-37 2.7E-42 317.3 16.5 194 35-250 78-287 (590)
346 TIGR00955 3a01204 The Eye Pigm 100.0 5.8E-37 1.3E-41 315.3 20.4 199 50-263 36-256 (617)
347 TIGR00956 3a01205 Pleiotropic 100.0 7.6E-37 1.6E-41 336.8 22.6 210 29-259 758-989 (1394)
348 TIGR00954 3a01203 Peroxysomal 100.0 9.4E-37 2E-41 315.5 21.9 184 29-248 450-652 (659)
349 COG0396 sufC Cysteine desulfur 100.0 7.1E-36 1.5E-40 262.4 21.9 214 29-262 2-232 (251)
350 KOG0056 Heavy metal exporter H 100.0 4.7E-37 1E-41 293.1 15.5 213 30-264 537-762 (790)
351 COG0488 Uup ATPase components 100.0 3.2E-36 7E-41 300.7 20.6 203 27-263 318-525 (530)
352 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-35 2.8E-40 330.1 24.3 200 30-263 636-850 (1522)
353 PLN03140 ABC transporter G fam 100.0 2.7E-35 5.7E-40 324.1 22.9 215 30-259 867-1106(1470)
354 cd03270 ABC_UvrA_I The excisio 100.0 2.8E-35 6.1E-40 267.0 18.6 195 51-256 7-226 (226)
355 PLN03232 ABC transporter C fam 100.0 5.1E-35 1.1E-39 324.9 23.7 202 30-264 614-829 (1495)
356 PLN03130 ABC transporter C fam 100.0 5.8E-35 1.3E-39 325.1 23.9 202 29-264 613-829 (1622)
357 TIGR00956 3a01205 Pleiotropic 100.0 1.7E-35 3.7E-40 326.1 19.3 200 51-262 73-299 (1394)
358 COG4133 CcmA ABC-type transpor 100.0 4E-35 8.7E-40 250.2 17.3 187 30-238 2-194 (209)
359 KOG0059 Lipid exporter ABCA1 a 100.0 3.7E-35 8E-40 311.6 19.2 217 29-264 563-788 (885)
360 PLN03140 ABC transporter G fam 100.0 2.1E-35 4.5E-40 325.0 16.7 199 51-263 177-427 (1470)
361 COG5265 ATM1 ABC-type transpor 100.0 7.7E-35 1.7E-39 274.5 16.8 213 30-264 262-487 (497)
362 TIGR01271 CFTR_protein cystic 100.0 1.3E-34 2.7E-39 321.5 20.8 184 52-263 439-636 (1490)
363 COG4778 PhnL ABC-type phosphon 100.0 1.1E-34 2.5E-39 243.5 13.7 215 29-249 3-227 (235)
364 COG4136 ABC-type uncharacteriz 100.0 9.9E-34 2.2E-38 233.4 14.2 195 30-247 2-207 (213)
365 PTZ00243 ABC transporter; Prov 100.0 5.2E-33 1.1E-37 309.1 22.5 186 51-264 672-871 (1560)
366 KOG0061 Transporter, ABC super 100.0 6E-33 1.3E-37 283.7 18.5 215 30-263 25-260 (613)
367 cd03271 ABC_UvrA_II The excisi 100.0 1.3E-32 2.9E-37 253.3 18.7 202 52-258 8-261 (261)
368 COG4170 SapD ABC-type antimicr 100.0 7E-33 1.5E-37 240.1 12.0 277 29-317 2-303 (330)
369 COG4138 BtuD ABC-type cobalami 100.0 3.6E-33 7.9E-38 235.5 8.3 209 30-265 3-223 (248)
370 KOG0054 Multidrug resistance-a 100.0 1.4E-31 3.1E-36 286.6 20.8 216 29-266 1137-1365(1381)
371 KOG0927 Predicted transporter 100.0 3.3E-31 7.1E-36 256.4 18.2 220 30-263 75-309 (614)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 8.4E-32 1.8E-36 239.2 12.3 164 56-249 14-190 (197)
373 KOG0054 Multidrug resistance-a 100.0 7.8E-31 1.7E-35 280.9 22.0 204 27-263 515-731 (1381)
374 COG1129 MglA ABC-type sugar tr 100.0 1.3E-30 2.7E-35 255.3 19.5 219 28-262 261-489 (500)
375 KOG0927 Predicted transporter 100.0 2.1E-31 4.6E-36 257.7 13.8 205 27-263 386-596 (614)
376 KOG0062 ATPase component of AB 100.0 8.6E-31 1.9E-35 252.2 12.0 198 30-264 80-286 (582)
377 PF00005 ABC_tran: ABC transpo 100.0 8.5E-31 1.8E-35 218.8 10.5 131 55-202 1-137 (137)
378 cd03279 ABC_sbcCD SbcCD and ot 100.0 3.6E-30 7.7E-35 231.6 14.4 191 30-252 5-211 (213)
379 COG4615 PvdE ABC-type sideroph 100.0 3.8E-30 8.3E-35 240.8 14.5 201 30-256 322-530 (546)
380 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.4E-29 3E-34 232.0 16.8 78 168-248 153-234 (243)
381 cd03274 ABC_SMC4_euk Eukaryoti 100.0 9.1E-30 2E-34 228.6 7.8 185 30-249 5-204 (212)
382 PRK00349 uvrA excinuclease ABC 100.0 8.7E-28 1.9E-32 253.7 22.9 108 156-265 810-929 (943)
383 KOG0066 eIF2-interacting prote 100.0 1.9E-28 4.1E-33 231.8 14.1 202 27-262 583-790 (807)
384 KOG0062 ATPase component of AB 100.0 2.7E-28 5.8E-33 235.1 14.9 197 27-254 359-559 (582)
385 cd03240 ABC_Rad50 The catalyti 100.0 4.3E-28 9.3E-33 216.6 13.7 166 58-249 16-197 (204)
386 COG1245 Predicted ATPase, RNas 100.0 9.4E-28 2E-32 228.3 15.1 184 30-248 342-530 (591)
387 PRK00635 excinuclease ABC subu 100.0 6.8E-27 1.5E-31 256.6 23.4 104 158-263 791-906 (1809)
388 cd03273 ABC_SMC2_euk Eukaryoti 100.0 5.7E-28 1.2E-32 222.5 12.6 179 65-248 25-242 (251)
389 TIGR00630 uvra excinuclease AB 99.9 7.7E-27 1.7E-31 246.1 21.2 104 156-261 808-923 (924)
390 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.5E-27 5.5E-32 217.7 11.8 178 63-249 21-233 (247)
391 COG4178 ABC-type uncharacteriz 99.9 1.7E-26 3.8E-31 230.4 18.4 187 28-247 390-586 (604)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.9 5.7E-27 1.2E-31 208.3 12.4 174 54-251 11-192 (198)
393 COG3845 ABC-type uncharacteriz 99.9 2.6E-26 5.6E-31 221.3 17.6 219 27-262 254-491 (501)
394 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.9E-25 4.1E-30 198.9 10.6 145 55-255 17-171 (200)
395 KOG0065 Pleiotropic drug resis 99.9 2.3E-25 5E-30 234.6 8.5 196 50-260 802-1018(1391)
396 KOG0066 eIF2-interacting prote 99.9 1.4E-24 3.1E-29 205.6 10.4 216 29-262 263-498 (807)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 6.3E-24 1.4E-28 190.8 13.3 84 168-251 121-211 (213)
398 COG1245 Predicted ATPase, RNas 99.9 2.2E-23 4.8E-28 198.7 13.1 176 62-249 97-288 (591)
399 KOG0060 Long-chain acyl-CoA tr 99.9 1.7E-22 3.7E-27 197.4 17.9 191 28-249 431-641 (659)
400 COG2401 ABC-type ATPase fused 99.9 2.4E-22 5.3E-27 189.6 15.5 179 51-253 395-588 (593)
401 cd03239 ABC_SMC_head The struc 99.9 2.8E-22 6E-27 175.2 13.7 74 174-249 95-172 (178)
402 cd03227 ABC_Class2 ABC-type Cl 99.9 4.9E-22 1.1E-26 171.1 11.3 75 173-249 77-155 (162)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.9 6.2E-22 1.3E-26 179.0 10.7 153 52-257 17-175 (222)
404 cd03241 ABC_RecN RecN ATPase i 99.9 4.2E-21 9.2E-26 179.2 15.2 78 172-252 169-250 (276)
405 PRK00635 excinuclease ABC subu 99.9 1.3E-20 2.8E-25 207.6 20.9 105 158-264 1681-1797(1809)
406 cd03243 ABC_MutS_homologs The 99.8 2.4E-21 5.2E-26 172.7 8.9 155 56-260 20-176 (202)
407 KOG0064 Peroxisomal long-chain 99.8 1.9E-20 4.1E-25 181.2 12.9 189 31-247 482-681 (728)
408 COG0178 UvrA Excinuclease ATPa 99.8 3E-19 6.6E-24 180.6 21.2 106 158-265 804-921 (935)
409 cd03283 ABC_MutS-like MutS-lik 99.8 4.5E-20 9.8E-25 164.1 10.3 144 52-247 14-163 (199)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.8 9.9E-20 2.1E-24 162.4 12.0 142 51-242 15-159 (204)
411 TIGR00630 uvra excinuclease AB 99.8 9.2E-20 2E-24 192.7 13.8 102 160-263 471-583 (924)
412 PRK00349 uvrA excinuclease ABC 99.8 1.2E-19 2.5E-24 192.3 13.2 104 159-264 472-586 (943)
413 KOG0065 Pleiotropic drug resis 99.8 1.2E-19 2.6E-24 191.8 12.2 198 52-263 128-351 (1391)
414 cd03242 ABC_RecF RecF is a rec 99.8 1.8E-18 4E-23 161.0 12.8 77 171-252 181-269 (270)
415 KOG0063 RNAse L inhibitor, ABC 99.8 5E-18 1.1E-22 161.1 12.1 175 50-249 347-532 (592)
416 smart00534 MUTSac ATPase domai 99.7 6.7E-18 1.4E-22 148.5 5.8 83 168-252 56-139 (185)
417 cd03284 ABC_MutS1 MutS1 homolo 99.7 1.5E-17 3.3E-22 149.7 7.8 153 52-261 18-179 (216)
418 TIGR02858 spore_III_AA stage I 99.7 5.2E-16 1.1E-20 143.8 12.8 143 66-261 112-267 (270)
419 cd03281 ABC_MSH5_euk MutS5 hom 99.7 1.2E-15 2.6E-20 137.2 12.8 65 177-241 94-161 (213)
420 TIGR01069 mutS2 MutS2 family p 99.7 2.9E-16 6.2E-21 164.5 9.9 133 57-238 313-449 (771)
421 PF02463 SMC_N: RecF/RecN/SMC 99.6 2.5E-15 5.4E-20 135.5 11.0 86 155-247 122-211 (220)
422 cd03287 ABC_MSH3_euk MutS3 hom 99.6 7.1E-15 1.5E-19 132.7 10.1 140 52-239 18-159 (222)
423 PRK00409 recombination and DNA 99.6 9.3E-15 2E-19 153.5 9.8 77 169-247 386-463 (782)
424 KOG0063 RNAse L inhibitor, ABC 99.6 1.1E-14 2.3E-19 138.7 8.7 176 63-249 98-288 (592)
425 TIGR00618 sbcc exonuclease Sbc 99.5 1.6E-14 3.4E-19 157.3 10.7 82 168-250 945-1036(1042)
426 TIGR00634 recN DNA repair prot 99.5 2.3E-14 5E-19 146.4 9.4 77 172-251 439-519 (563)
427 PRK08533 flagellar accessory p 99.5 9.8E-14 2.1E-18 126.2 12.3 74 173-248 95-184 (230)
428 PRK07721 fliI flagellum-specif 99.5 2.9E-13 6.2E-18 133.3 14.5 186 52-260 146-340 (438)
429 cd03286 ABC_MSH6_euk MutS6 hom 99.5 1.3E-13 2.7E-18 124.2 10.5 143 52-241 17-160 (218)
430 PHA02562 46 endonuclease subun 99.5 4.5E-14 9.8E-19 144.4 7.6 79 170-252 465-555 (562)
431 PTZ00132 GTP-binding nuclear p 99.5 2.5E-13 5.5E-18 121.9 10.5 49 172-220 149-204 (215)
432 PRK10869 recombination and rep 99.5 1.5E-13 3.3E-18 139.6 10.0 76 173-251 430-509 (553)
433 PRK13695 putative NTPase; Prov 99.5 9E-14 1.9E-18 120.9 6.9 81 169-255 74-156 (174)
434 cd01128 rho_factor Transcripti 99.4 6.1E-13 1.3E-17 122.0 11.2 76 172-253 128-212 (249)
435 PRK03918 chromosome segregatio 99.4 3.9E-13 8.5E-18 144.4 9.9 78 169-248 784-867 (880)
436 PRK01156 chromosome segregatio 99.4 6.5E-13 1.4E-17 143.0 11.0 78 170-248 798-883 (895)
437 PRK10246 exonuclease subunit S 99.4 5.7E-13 1.2E-17 144.8 10.1 81 168-249 944-1032(1047)
438 cd01124 KaiC KaiC is a circadi 99.4 1.8E-12 4E-17 113.4 11.3 80 168-248 66-163 (187)
439 TIGR00606 rad50 rad50. This fa 99.4 1.1E-12 2.4E-17 145.7 8.9 73 170-242 1196-1278(1311)
440 PRK06793 fliI flagellum-specif 99.4 2.6E-12 5.7E-17 125.7 10.2 164 30-255 130-303 (432)
441 COG0178 UvrA Excinuclease ATPa 99.3 2.9E-11 6.2E-16 123.4 13.5 98 167-266 475-580 (935)
442 TIGR02168 SMC_prok_B chromosom 99.3 4.3E-12 9.4E-17 139.7 7.5 77 169-248 1085-1165(1179)
443 COG3910 Predicted ATPase [Gene 99.3 5.6E-11 1.2E-15 102.3 12.2 82 169-252 125-206 (233)
444 PRK13830 conjugal transfer pro 99.3 6.6E-11 1.4E-15 125.7 14.4 70 189-259 650-729 (818)
445 TIGR02788 VirB11 P-type DNA tr 99.2 4.1E-12 8.8E-17 120.5 3.5 144 58-262 137-280 (308)
446 PRK00064 recF recombination pr 99.2 4.1E-11 8.8E-16 116.1 8.9 77 172-252 272-359 (361)
447 cd00820 PEPCK_HprK Phosphoenol 99.2 2.7E-11 5.8E-16 96.4 5.9 46 52-103 2-47 (107)
448 PRK02224 chromosome segregatio 99.2 4E-11 8.7E-16 129.0 9.1 79 170-250 778-869 (880)
449 cd01120 RecA-like_NTPases RecA 99.2 2.6E-10 5.7E-15 96.5 11.5 65 173-238 67-141 (165)
450 TIGR02169 SMC_prok_A chromosom 99.2 4.5E-11 9.8E-16 131.8 8.3 77 170-249 1071-1151(1164)
451 PRK06067 flagellar accessory p 99.2 3.5E-10 7.5E-15 103.1 12.6 76 172-248 99-186 (234)
452 TIGR03238 dnd_assoc_3 dnd syst 99.1 6.5E-11 1.4E-15 116.1 5.3 51 53-105 20-71 (504)
453 cd01125 repA Hexameric Replica 99.0 2.4E-09 5.3E-14 97.8 10.3 49 187-236 107-161 (239)
454 TIGR01026 fliI_yscN ATPase Fli 99.0 8.2E-09 1.8E-13 101.9 14.5 186 51-261 150-346 (440)
455 TIGR00611 recf recF protein. A 99.0 9.9E-10 2.1E-14 106.5 7.6 63 172-238 274-345 (365)
456 TIGR02655 circ_KaiC circadian 98.9 8.3E-11 1.8E-15 118.2 -1.8 70 168-248 110-190 (484)
457 smart00382 AAA ATPases associa 98.9 3E-08 6.5E-13 80.8 13.7 63 171-233 58-125 (148)
458 PRK05399 DNA mismatch repair p 98.9 3.9E-09 8.5E-14 112.5 10.4 69 172-243 665-738 (854)
459 COG0419 SbcC ATPase involved i 98.9 3.4E-09 7.5E-14 114.3 9.5 79 169-249 811-897 (908)
460 cd01131 PilT Pilus retraction 98.9 6.4E-09 1.4E-13 92.4 8.7 57 183-248 66-122 (198)
461 PRK14079 recF recombination pr 98.9 5.1E-09 1.1E-13 101.0 7.5 78 172-257 262-348 (349)
462 PRK13891 conjugal transfer pro 98.8 3.9E-08 8.4E-13 105.2 14.5 69 184-253 680-751 (852)
463 TIGR02680 conserved hypothetic 98.8 9E-09 1.9E-13 114.6 7.6 63 170-236 1244-1318(1353)
464 TIGR00152 dephospho-CoA kinase 98.7 9.5E-09 2.1E-13 90.4 5.0 71 177-250 61-133 (188)
465 PRK06002 fliI flagellum-specif 98.7 2.6E-08 5.7E-13 97.9 7.7 66 27-101 136-201 (450)
466 cd02023 UMPK Uridine monophosp 98.7 1.1E-08 2.4E-13 90.6 4.0 111 67-206 1-113 (198)
467 PF13304 AAA_21: AAA domain; P 98.7 6.2E-08 1.3E-12 87.1 8.3 66 171-237 234-302 (303)
468 cd01130 VirB11-like_ATPase Typ 98.6 1.7E-08 3.6E-13 88.8 3.1 47 54-100 14-60 (186)
469 TIGR03881 KaiC_arch_4 KaiC dom 98.6 2.7E-07 5.8E-12 83.6 10.3 58 191-248 121-188 (229)
470 TIGR00416 sms DNA repair prote 98.6 4.5E-07 9.8E-12 90.4 12.2 62 190-251 169-247 (454)
471 PF00488 MutS_V: MutS domain V 98.5 8.4E-07 1.8E-11 81.0 11.6 51 189-239 120-171 (235)
472 PRK00300 gmk guanylate kinase; 98.5 5E-07 1.1E-11 80.3 9.7 27 63-89 3-29 (205)
473 PLN03210 Resistant to P. syrin 98.5 3.5E-07 7.6E-12 101.2 10.5 146 58-248 200-349 (1153)
474 cd01122 GP4d_helicase GP4d_hel 98.5 2.7E-06 5.9E-11 79.0 14.9 157 52-233 17-190 (271)
475 PRK13898 type IV secretion sys 98.5 1.3E-06 2.9E-11 93.2 14.2 52 187-239 638-690 (800)
476 TIGR01420 pilT_fam pilus retra 98.5 7.6E-07 1.6E-11 85.8 11.0 54 183-245 187-240 (343)
477 PRK07594 type III secretion sy 98.5 1.3E-07 2.9E-12 92.9 5.7 64 29-101 128-191 (433)
478 PRK06995 flhF flagellar biosyn 98.5 3E-07 6.5E-12 91.6 8.2 43 53-95 244-286 (484)
479 cd01121 Sms Sms (bacterial rad 98.5 1.5E-06 3.3E-11 84.4 12.7 61 190-250 157-234 (372)
480 PF13555 AAA_29: P-loop contai 98.5 1.5E-07 3.4E-12 67.1 4.3 36 55-90 12-48 (62)
481 PF13558 SbcCD_C: Putative exo 98.5 3E-07 6.5E-12 71.2 5.6 51 168-218 27-90 (90)
482 TIGR02903 spore_lon_C ATP-depe 98.5 7.3E-07 1.6E-11 92.2 9.9 107 64-218 174-291 (615)
483 cd01136 ATPase_flagellum-secre 98.4 3.9E-07 8.5E-12 86.6 6.7 50 51-101 56-105 (326)
484 TIGR00767 rho transcription te 98.4 3.7E-07 8E-12 88.5 6.5 52 30-89 130-192 (415)
485 PRK07196 fliI flagellum-specif 98.4 2.2E-07 4.7E-12 91.4 4.8 42 51-93 142-183 (434)
486 PRK09862 putative ATP-dependen 98.4 2.5E-07 5.3E-12 92.9 5.0 61 33-102 187-247 (506)
487 PRK08149 ATP synthase SpaL; Va 98.4 5E-07 1.1E-11 88.7 6.1 50 51-101 138-190 (428)
488 PRK10078 ribose 1,5-bisphospho 98.4 6.3E-07 1.4E-11 78.7 5.7 34 65-101 2-35 (186)
489 PRK09099 type III secretion sy 98.3 8E-07 1.7E-11 87.7 5.9 50 51-101 150-199 (441)
490 PRK09825 idnK D-gluconate kina 98.3 5.6E-07 1.2E-11 78.5 4.3 35 64-102 2-36 (176)
491 PRK11823 DNA repair protein Ra 98.3 6.8E-06 1.5E-10 81.9 12.4 59 190-248 155-230 (446)
492 TIGR03880 KaiC_arch_3 KaiC dom 98.3 8.6E-06 1.9E-10 73.6 11.8 57 190-248 106-177 (224)
493 cd00009 AAA The AAA+ (ATPases 98.3 5.1E-06 1.1E-10 68.2 9.4 56 179-235 72-131 (151)
494 cd01876 YihA_EngB The YihA (En 98.3 1.7E-06 3.6E-11 73.1 6.4 59 157-219 103-169 (170)
495 TIGR03015 pepcterm_ATPase puta 98.3 3.8E-06 8.2E-11 77.7 9.3 39 52-90 29-68 (269)
496 PRK13764 ATPase; Provisional 98.3 5.8E-06 1.3E-10 84.5 11.1 62 188-257 321-399 (602)
497 PRK00454 engB GTP-binding prot 98.3 3E-06 6.6E-11 74.3 7.9 62 157-222 128-195 (196)
498 TIGR02546 III_secr_ATP type II 98.3 9.5E-07 2.1E-11 87.2 4.9 50 51-101 132-181 (422)
499 TIGR03498 FliI_clade3 flagella 98.2 1.2E-06 2.6E-11 86.0 5.5 51 51-102 127-177 (418)
500 PTZ00454 26S protease regulato 98.2 7.8E-06 1.7E-10 80.2 10.9 54 186-239 233-299 (398)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-59 Score=406.13 Aligned_cols=220 Identities=22% Similarity=0.346 Sum_probs=191.4
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+|+|+ +..+|++||++|++||+++|+||||||||||||||+||..|++|+|.++|..+....
T Consensus 1 ~mi~i~~l~K~fg---------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~- 70 (240)
T COG1126 1 MMIEIKNLSKSFG---------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK- 70 (240)
T ss_pred CeEEEEeeeEEeC---------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-
Confidence 3799999999994 578999999999999999999999999999999999999999999999997543221
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
+ -..+|+.+++++|++.+++.+++-+++ .+ ..+.++ +++.++|+.+|+. .+.+|.+|||||
T Consensus 71 -----~----~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQ 141 (240)
T COG1126 71 -----D----ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQ 141 (240)
T ss_pred -----h----HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHH
Confidence 1 124678899998888888888876543 22 123333 3456788889986 478999999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||||||||+.+|+++|+|||||+|||+...++++.+++++++ |.|+|+|||++.|+..+||||++|++|++++.|++
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCH
Confidence 99999999999999999999999999999999999999999865 99999999999999999999999999999999999
Q ss_pred hHHHHhhhhh
Q 018938 259 DKVKEASKLS 268 (348)
Q Consensus 259 ~~~~~~~~~~ 268 (348)
++++.++...
T Consensus 221 ~~~f~~p~~~ 230 (240)
T COG1126 221 EEFFDNPKSE 230 (240)
T ss_pred HHHhcCCCCH
Confidence 9999876654
No 2
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=390.78 Aligned_cols=220 Identities=24% Similarity=0.341 Sum_probs=197.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||||.|+ ++.+++|+||+|++||+++++|||||||||+||+|++++.|++|+|.++|+++....
T Consensus 1 MI~~~nvsk~y~---------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d-- 69 (309)
T COG1125 1 MIEFENVSKRYG---------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD-- 69 (309)
T ss_pred CceeeeeehhcC---------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC--
Confidence 589999999994 578999999999999999999999999999999999999999999999998764321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cCCCCH----HHHHHHHHHcCCC----cCccCCCCCHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGIDP----QRRAELIKVLDID----LSWRMHKVSDGQ 178 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~l~~l~l~----~~~~~~~LSgGq 178 (348)
..++|+.++|+-|+..+++.+++.+++.. +.+|++ +++.++++.++++ .+++|++|||||
T Consensus 70 ---------~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQ 140 (309)
T COG1125 70 ---------PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQ 140 (309)
T ss_pred ---------HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcch
Confidence 23578899999888888888888776532 234554 4567899999996 368999999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
+|||.+||||+.+|++||+||||++|||.+|.++.+.+.++.++.|+|||+||||++++.+++|||++|++|+++..++|
T Consensus 141 QQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P 220 (309)
T COG1125 141 QQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTP 220 (309)
T ss_pred hhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhh
Q 018938 259 DKVKEASKLSL 269 (348)
Q Consensus 259 ~~~~~~~~~~~ 269 (348)
+++..++....
T Consensus 221 ~~il~~Pan~F 231 (309)
T COG1125 221 DEILANPANDF 231 (309)
T ss_pred HHHHhCccHHH
Confidence 99998776543
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.5e-55 Score=398.54 Aligned_cols=217 Identities=23% Similarity=0.413 Sum_probs=186.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|.++|+++..-.
T Consensus 2 ~L~~~~ls~~y~---------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~-- 70 (258)
T COG1120 2 MLEVENLSFGYG---------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS-- 70 (258)
T ss_pred eeEEEEEEEEEC---------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC--
Confidence 689999999994 578999999999999999999999999999999999999999999999998764321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-------CCCC---HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-------AGID---PQRRAELIKVLDID--LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~---~~~~~~~l~~l~l~--~~~~~~~LSg 176 (348)
..++.+.++|++|.......+++.+.. ++. ..++ .+.+.++++.+++. .++.+.+|||
T Consensus 71 ---------~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSG 141 (258)
T COG1120 71 ---------PKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSG 141 (258)
T ss_pred ---------HHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccCh
Confidence 234567788887776555555555433 221 1112 23467788999986 4788999999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||.|||||+++|++|||||||++||..++.+++++++++++++|+|||+|+||++.+.++||++++|++|++++.|
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred ChhHHHHhhh
Q 018938 257 PMDKVKEASK 266 (348)
Q Consensus 257 ~~~~~~~~~~ 266 (348)
+|+++.+...
T Consensus 222 ~p~evlT~e~ 231 (258)
T COG1120 222 TPEEVLTEEN 231 (258)
T ss_pred CcchhcCHHH
Confidence 9999887543
No 4
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-54 Score=394.43 Aligned_cols=231 Identities=23% Similarity=0.337 Sum_probs=195.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||++++|+|.|... + .+...+|+||||+|++||++||||.||||||||+|||.+|..|++|+|.++|.++..-..
T Consensus 1 mI~l~~vsK~~~~~-~---~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~- 75 (339)
T COG1135 1 MIELENVSKTFGQT-G---TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSE- 75 (339)
T ss_pred CeEEEeeeeeeccC-C---CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCCh-
Confidence 58999999999642 1 024679999999999999999999999999999999999999999999999987543211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.. -+..|+.+++++|.+.+....++.+ +.+.+ .+.++ .++.++++.+|+. .+++|.+|||||||
T Consensus 76 ---~~----Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQ 148 (339)
T COG1135 76 ---AE----LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQ 148 (339)
T ss_pred ---HH----HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhh
Confidence 01 1246788999988777766555554 43332 23332 4567889999996 46799999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++||.|||||+|||++.+.++++|+++.++.|.||++|||.|+.+.++||||++|++|++++.|+..+
T Consensus 149 RVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHH
Q 018938 261 VKEASKLSLMRT 272 (348)
Q Consensus 261 ~~~~~~~~~~~~ 272 (348)
++.++....++.
T Consensus 229 vF~~Pk~~~t~~ 240 (339)
T COG1135 229 VFANPKHAITQE 240 (339)
T ss_pred hhcCcchHHHHH
Confidence 999887765543
No 5
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-53 Score=375.86 Aligned_cols=225 Identities=24% Similarity=0.369 Sum_probs=183.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||++.|+... ...++|++|||+|.+||++||+|+||||||||.++|+|+.+|+.|+|.++|........
T Consensus 2 ~~l~v~nl~~~y~~~~-----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 2 TLLSVRNLSIVYGGGK-----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR 76 (252)
T ss_pred ceEEEeceEEEecCCc-----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCcccc
Confidence 4799999999996410 01259999999999999999999999999999999999999999999999975432111
Q ss_pred ccccCcccccchhhhhhhhhcCCC--ccccccchHHHHHhc---cCCCC--HHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFE--VPIQMDVSAEKMIFG---VAGID--PQRRAELIKVLDID---LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~--~~~~~~~l~~l~l~---~~~~~~~LSgGq 178 (348)
. ..+.+.+.+++|+ ..+++..++...+.- ..+.+ ..++.++++.+|+. ++++|++|||||
T Consensus 77 ~----------~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ 146 (252)
T COG1124 77 A----------KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQ 146 (252)
T ss_pred c----------hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhH
Confidence 0 0122334444333 334555666554421 11222 34578899999997 478999999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
+|||||||||+.+|++||||||||+||+..+.+++++|.+++++++.|+|+||||+..+..+||||++|++|++++.++.
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhh
Q 018938 259 DKVKEASKLS 268 (348)
Q Consensus 259 ~~~~~~~~~~ 268 (348)
+++...+.+.
T Consensus 227 ~~l~~~~~h~ 236 (252)
T COG1124 227 EELLSHPSHP 236 (252)
T ss_pred hhhhcCCccH
Confidence 9988764443
No 6
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-52 Score=379.63 Aligned_cols=213 Identities=23% Similarity=0.438 Sum_probs=177.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|++ . ++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.++|........
T Consensus 3 ~~i~v~nl~v~y~~--------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGN--------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECC--------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc
Confidence 57999999999952 3 79999999999999999999999999999999999999999999999975422110
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHHh-cc---CC-------CCHHHHHHHHHHcCCC--cCccCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIF-GV---AG-------IDPQRRAELIKVLDID--LSWRMHK 173 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~---~~-------~~~~~~~~~l~~l~l~--~~~~~~~ 173 (348)
+..++|++|... ..+.+++.++.. +. .+ .+.+.+.++|+.+|+. .++.+.+
T Consensus 74 --------------~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~ 139 (254)
T COG1121 74 --------------RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE 139 (254)
T ss_pred --------------CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccc
Confidence 123555555332 223455666542 21 11 1236678899999986 4788999
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||+|||.|||||+++|++|||||||+|+|+.++..|+++|+++.++ |+|||+||||++.+..+||+|++| +++++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~L-n~~~~ 217 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICL-NRHLI 217 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEE-cCeeE
Confidence 9999999999999999999999999999999999999999999999877 999999999999999999999999 57788
Q ss_pred eecChhHHHHhhh
Q 018938 254 LAMPMDKVKEASK 266 (348)
Q Consensus 254 ~~g~~~~~~~~~~ 266 (348)
+.|+++++.+.+.
T Consensus 218 ~~G~~~~~~~~~~ 230 (254)
T COG1121 218 ASGPPEEVLTEEN 230 (254)
T ss_pred eccChhhccCHHH
Confidence 9999999876543
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-52 Score=370.89 Aligned_cols=220 Identities=18% Similarity=0.277 Sum_probs=187.9
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.+.|++++|+++| |++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|.++|.++..-.
T Consensus 6 ~~~I~vr~v~~~f---------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSF---------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeec---------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccC
Confidence 5689999999999 4689999999999999999999999999999999999999999999999998753321
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCCHHHH----HHHHHHcCCC---cCccCCCCCH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGIDPQRR----AELIKVLDID---LSWRMHKVSD 176 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~----~~~l~~l~l~---~~~~~~~LSg 176 (348)
.. -....++++++++|+-.++..+++.++. +.+ ...++..+ ..-++.+|+. .+.+|.+|||
T Consensus 77 ~~--------~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSG 148 (263)
T COG1127 77 EE--------ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSG 148 (263)
T ss_pred HH--------HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcc
Confidence 10 0124567788888887788777766543 322 22333333 3346667875 4678999999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||++|++||||++.+|++|++||||+||||.+...+-++|+++.+..|.|+++||||++.+..+|||++++.+|+|++.|
T Consensus 149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~G 228 (263)
T COG1127 149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228 (263)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+++++.+.
T Consensus 229 t~~el~~s 236 (263)
T COG1127 229 TPEELLAS 236 (263)
T ss_pred CHHHHHhC
Confidence 99998864
No 8
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-52 Score=372.59 Aligned_cols=200 Identities=25% Similarity=0.375 Sum_probs=172.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+++++++++.|+ ...+|+|+||+|.+||+++|+||||||||||||+|+|+..|++|+|.++|..+..
T Consensus 2 ~~l~i~~v~~~f~---------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~--- 69 (248)
T COG1116 2 ALLEIEGVSKSFG---------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG--- 69 (248)
T ss_pred ceEEEEeeEEEeC---------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC---
Confidence 3689999999994 4789999999999999999999999999999999999999999999999986521
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
....++|++|+..+.++.++.++. +++. +.. .+++.++++.+|+. .+++|++||||||
T Consensus 70 -------------p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMr 136 (248)
T COG1116 70 -------------PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMR 136 (248)
T ss_pred -------------CCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHH
Confidence 112455666666777777766543 3332 111 24567889999996 5789999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEe
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQ 253 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~ 253 (348)
|||+|||||+.+|++|||||||++||..++..+.+.|.++.++.++||++||||++++..++|||++|.+ |+|.
T Consensus 137 QRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 137 QRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 5553
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-52 Score=368.98 Aligned_cols=220 Identities=22% Similarity=0.336 Sum_probs=186.4
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||++.|+ +++.+|++|||+|++||+++||||||||||||||+|+|+..|++|+|.++|..+.....
T Consensus 2 ~~i~~~nl~k~yp--------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYP--------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecC--------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccch
Confidence 4799999999996 46889999999999999999999999999999999999999999999999975432211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc-----------CCCCH---HHHHHHHHHcCCC--cCccC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV-----------AGIDP---QRRAELIKVLDID--LSWRM 171 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~---~~~~~~l~~l~l~--~~~~~ 171 (348)
.--..+++.++|.+|++.+...+++.++ ..+. ..++. ..+-+.|+.+|+. ..++.
T Consensus 74 --------k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 74 --------KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred --------HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh
Confidence 1123577889999888777666655432 2211 11222 3345678888875 35788
Q ss_pred CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
.+|||||+|||+|||||+++|++||.|||+++|||.+.+.+++.|++++++.|.|||++.|+++.+.+|||||+-|++|+
T Consensus 146 ~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecChhHHHHh
Q 018938 252 LQLAMPMDKVKEA 264 (348)
Q Consensus 252 i~~~g~~~~~~~~ 264 (348)
|+++|++.++.+.
T Consensus 226 ivfDg~~~el~~~ 238 (258)
T COG3638 226 IVFDGPASELTDE 238 (258)
T ss_pred EEEeCChhhhhHH
Confidence 9999999986553
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-52 Score=391.54 Aligned_cols=217 Identities=23% Similarity=0.372 Sum_probs=192.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
+.|+++||+|+|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++..-..
T Consensus 4 ~~l~i~~v~k~yg---------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFG---------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecC---------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence 5799999999994 5789999999999999999999999999999999999999999999999998754221
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC-C--CC-H---HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA-G--ID-P---QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~-~---~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
.++.+++++|+..+++.+++.++ .|++. . .. . +++.++++.+++. .++++++|||||
T Consensus 75 -------------~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQ 141 (352)
T COG3842 75 -------------EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQ 141 (352)
T ss_pred -------------hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHH
Confidence 34677888888888888887654 56654 1 12 1 3677888888886 478999999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++||||||.|+||...|.++...++++.++.|.|.|+||||.+++..++|||++|++|+|...|+|
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP 221 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTP 221 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhh
Q 018938 259 DKVKEASKL 267 (348)
Q Consensus 259 ~~~~~~~~~ 267 (348)
+++...+..
T Consensus 222 ~eiY~~P~~ 230 (352)
T COG3842 222 EEIYERPAT 230 (352)
T ss_pred HHHhhCcch
Confidence 999887654
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-50 Score=380.92 Aligned_cols=279 Identities=23% Similarity=0.372 Sum_probs=214.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..++++||+|+|+. ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.++|.+....
T Consensus 3 ~~i~~~~l~k~~~~--------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-- 72 (293)
T COG1131 3 EVIEVRNLTKKYGG--------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-- 72 (293)
T ss_pred ceeeecceEEEeCC--------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--
Confidence 36899999999941 47899999999999999999999999999999999999999999999999875432
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCC----CHHHHHHHHHHcCCCc--CccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGI----DPQRRAELIKVLDIDL--SWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~l~l~~--~~~~~~LSgGqr 179 (348)
...+++.++|+++...++..+++.+++. .+.+. ..+++.++++.+++.. ++++.+||+|||
T Consensus 73 ----------~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~k 142 (293)
T COG1131 73 ----------PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMK 142 (293)
T ss_pred ----------HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHH
Confidence 1235667888888887888888877542 22222 2457789999999975 677999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
||++||+||+++|++|||||||+||||.++..++++|++++++.|+|||++||.+++++.+||+|++|++|++++.|+++
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998765589999999999999999999999999999999988
Q ss_pred HHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHHHHHhhccccccccceeecCcccc
Q 018938 260 KVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENF 339 (348)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 339 (348)
++........ ............. ....... ..+ ..........+...+.....+.....++|++
T Consensus 223 ~l~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 286 (293)
T COG1131 223 ELKEKFGGKG------VIELEPERLELAE---LLEGLKL----VKG---EEELAEILEALLEEGVKIESIEVKEPSLEDV 286 (293)
T ss_pred HHHHhhccCc------eEEEecccccchh---hhhcccc----ccc---chhHHHHHHHHHHcCCceeeeecCCCCHHHH
Confidence 8765322100 0000000000000 0000000 000 1223445556667777777888888999999
Q ss_pred cccc
Q 018938 340 VLST 343 (348)
Q Consensus 340 ~~~~ 343 (348)
|+..
T Consensus 287 ~~~~ 290 (293)
T COG1131 287 FLEL 290 (293)
T ss_pred HHHH
Confidence 9754
No 12
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-51 Score=355.06 Aligned_cols=215 Identities=25% Similarity=0.397 Sum_probs=185.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||++.+++|+|+. ...+++||||+++.||++||+|||||||||+||+|++++.|++|.|+++|.+...++
T Consensus 1 Ml~v~~l~K~y~~--------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-- 70 (245)
T COG4555 1 MLEVTDLTKSYGS--------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-- 70 (245)
T ss_pred CeeeeehhhhccC--------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh--
Confidence 5899999999963 345999999999999999999999999999999999999999999999997654322
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
...++.++..+.+..++..+++++++.. +.+.. ..+.+++.+.|++. .++++.+||.||||
T Consensus 71 ----------~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kq 140 (245)
T COG4555 71 ----------SFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQ 140 (245)
T ss_pred ----------HHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHH
Confidence 2356677777777778888888775422 12222 34567788888885 58899999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+++|++++|||||||||..++..+.++++++. +.|++||++||++++++.+||+|+++++|++++.|++++
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence 9999999999999999999999999999999999999985 459999999999999999999999999999999999998
Q ss_pred HHHhh
Q 018938 261 VKEAS 265 (348)
Q Consensus 261 ~~~~~ 265 (348)
+....
T Consensus 220 l~~r~ 224 (245)
T COG4555 220 LDART 224 (245)
T ss_pred HHHHH
Confidence 87643
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-51 Score=382.58 Aligned_cols=217 Identities=25% Similarity=0.369 Sum_probs=191.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+|.|++ ..+|+++||+|+.||+++|+||||||||||||+|+|++.|++|+|.++|.++..-.+
T Consensus 2 ~~i~l~~v~K~yg~---------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 2 AELELKNVRKSFGS---------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred cEEEEeeeEEEcCC---------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence 36999999999952 239999999999999999999999999999999999999999999999997643211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
..+.+++++|+..+++.+++.++ .+++. +.. .+++.++.+.+++. ++++|.+||||||
T Consensus 73 -------------~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQr 139 (338)
T COG3839 73 -------------EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQR 139 (338)
T ss_pred -------------hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhH
Confidence 24678888888888888887654 45543 222 35677889999987 5899999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|+++|||||+|+||+..+..+...|+++.++.|.|+|+||||..++..++|||++|++|+|...|++.
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ 219 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPL 219 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 018938 260 KVKEASKL 267 (348)
Q Consensus 260 ~~~~~~~~ 267 (348)
++...+..
T Consensus 220 ely~~P~n 227 (338)
T COG3839 220 ELYERPAN 227 (338)
T ss_pred HHhhCccc
Confidence 99876654
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-50 Score=359.89 Aligned_cols=211 Identities=26% Similarity=0.400 Sum_probs=174.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+++++||+|.|+... ....+|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.++..-..
T Consensus 1 ~i~~~~v~k~y~~~~-----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~- 74 (226)
T COG1136 1 MIELKNVSKIYGLGG-----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE- 74 (226)
T ss_pred CcEEeeeEEEeccCC-----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCH-
Confidence 367999999996411 12579999999999999999999999999999999999999999999999976543211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCC----HHHHHHHHHHcCCC--cC-ccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGID----PQRRAELIKVLDID--LS-WRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~l~l~--~~-~~~~~LSgGqr 179 (348)
.. .....++.++|++|+..+.+.+++.+++. .+.+.. .++..++++.+|+. .. ++|.+||||||
T Consensus 75 ---~~---~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqq 148 (226)
T COG1136 75 ---KE---LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQ 148 (226)
T ss_pred ---HH---HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHH
Confidence 00 11123466899988888888888776542 122222 34566788888986 23 77999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+.+|++||+||||.+||.++...++++|++++++.|.|||+||||...+. +|||++.|.+|++.
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999999999888999999999988776 79999999999943
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-51 Score=369.31 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=189.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|.++|+++.|+ ...+++||||+|+.||.++|+||||||||||||+|+|++.|+.|.|.++|+..++....
T Consensus 2 ~i~i~~~~~~~~---------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 2 SIRINNVKKRFG---------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72 (345)
T ss_pred ceeehhhhhhcc---------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc
Confidence 589999999994 57899999999999999999999999999999999999999999999999855432221
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHH-HHHhccCC----C----CHHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGVAG----I----DPQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~----~~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
. ...++++|++|...++..+++. ++.|++.. . .+.++.++++.+.++ .+++|.+|||||
T Consensus 73 ~----------~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQ 142 (345)
T COG1118 73 A----------VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQ 142 (345)
T ss_pred c----------hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHH
Confidence 1 1245688887776677777765 45566521 1 134567888888886 478999999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++||||||+++||...+.++..+|+++.++.|.|.++||||.+++.++||||++|++|+|...|++
T Consensus 143 rQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p 222 (345)
T COG1118 143 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222 (345)
T ss_pred HHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hHHHHhhhhh
Q 018938 259 DKVKEASKLS 268 (348)
Q Consensus 259 ~~~~~~~~~~ 268 (348)
+++...+...
T Consensus 223 ~ev~~~P~s~ 232 (345)
T COG1118 223 DEVYDHPASR 232 (345)
T ss_pred HHHhcCCCcc
Confidence 9998876643
No 16
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-50 Score=364.65 Aligned_cols=218 Identities=30% Similarity=0.444 Sum_probs=183.9
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
+++++++++++|++ + ..+|+++||+|++||+++|+|+||||||||+++++|+++|++|.|.++|.+......
T Consensus 2 ~~i~~~~l~~~y~~-------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 2 RMIEAENLSFRYPG-------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred ceEEEEEEEEEcCC-------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhh
Confidence 47899999999963 2 689999999999999999999999999999999999999999999999986532110
Q ss_pred ccccCcccccchhhhhhhhhcCCCc--cccccchHHHHHhccC--CCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMIFGVA--GIDP----QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
...+++.+++++|.+ .+......++..|+.. +.+. .++.++++.+++. .++.+++|||||
T Consensus 74 ----------~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGq 143 (235)
T COG1122 74 ----------LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQ 143 (235)
T ss_pred ----------HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcc
Confidence 123456667664433 3344455666766643 2332 3566788888886 478899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+||.+|+.+|++||||||||+||+.++..++++++++.++.|+|||++|||++++..+||++++|++|+++.+|++
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCH
Confidence 99999999999999999999999999999999999999999887789999999999999999999999999999999999
Q ss_pred hHHHHh
Q 018938 259 DKVKEA 264 (348)
Q Consensus 259 ~~~~~~ 264 (348)
.++++.
T Consensus 224 ~~i~~~ 229 (235)
T COG1122 224 AEIFND 229 (235)
T ss_pred HHHhhh
Confidence 888754
No 17
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.6e-50 Score=377.15 Aligned_cols=214 Identities=21% Similarity=0.335 Sum_probs=180.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+|+|+ ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 6 ~~i~i~~l~k~~~---------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~- 75 (306)
T PRK13537 6 APIDFRNVEKRYG---------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA- 75 (306)
T ss_pred ceEEEEeEEEEEC---------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-
Confidence 5799999999994 467999999999999999999999999999999999999999999999998653211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh--c-cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF--G-VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
...++.++|+++...++..+++.+++. . ..+.. ..++.++++.+++. .++++.+||||||
T Consensus 76 -----------~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 144 (306)
T PRK13537 76 -----------RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMK 144 (306)
T ss_pred -----------HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHH
Confidence 123456777776666555566655432 1 22222 13456788888886 3678899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+||+||+++|++|||||||+|||+.++..++++|+++.+ .|+|||++||++++++.+||||++|++|++++.|+++
T Consensus 145 qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 145 RRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 5999999999999999999999999999999999999
Q ss_pred HHHHh
Q 018938 260 KVKEA 264 (348)
Q Consensus 260 ~~~~~ 264 (348)
++...
T Consensus 224 ~l~~~ 228 (306)
T PRK13537 224 ALIES 228 (306)
T ss_pred HHHhc
Confidence 98654
No 18
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-50 Score=367.53 Aligned_cols=271 Identities=21% Similarity=0.277 Sum_probs=205.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~ 104 (348)
+|+++||+.+|...+ +...+++||||+|++||++||+|+|||||||+.+.|+|++++ .+|+|.++|+++.
T Consensus 1 lL~v~nL~v~f~~~~-----g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~ 75 (316)
T COG0444 1 LLEVKNLSVSFPTDA-----GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL 75 (316)
T ss_pred CceEeeeEEEEecCC-----ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc
Confidence 378999999996421 346799999999999999999999999999999999999863 4578888887643
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCc--cccccchHHH----HHhccCCC-C----HHHHHHHHHHcCCC-----cC
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEK----MIFGVAGI-D----PQRRAELIKVLDID-----LS 168 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~-~----~~~~~~~l~~l~l~-----~~ 168 (348)
.-... .. ..-..+.+++++|+. .+++.++... .+...... . .+++.++++.+++. .+
T Consensus 76 ~l~~~----~~---~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~ 148 (316)
T COG0444 76 SLSEK----EL---RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLK 148 (316)
T ss_pred cCCHH----HH---HhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHh
Confidence 22110 00 001124566665542 2333333322 11111111 1 23566788889986 25
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
.+|++|||||+|||.||.||+.+|++||.||||++||...+.+++++|+++.++.|.|+|+||||+..+.++||||+||+
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY 228 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE
Confidence 78999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHHH
Q 018938 249 HGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAV 317 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (348)
.|+|++.|+.++++.++.+.+.+.+...+... ..+.....+..|.....+.||+|.++.+.+..
T Consensus 229 aG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~-----~~~l~~ipG~~p~l~~~p~GC~F~pRC~~a~~ 292 (316)
T COG0444 229 AGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRL-----GERLPPIPGSPPSLLNPPKGCRFHPRCPYAME 292 (316)
T ss_pred CcEEEEeCCHHHHhcCCCChHHHHHHHhCccc-----cCCcCCCCCCCCcccCCCCCCccccccchhHh
Confidence 99999999999999999888776654444321 11112223445666677889999988776665
No 19
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.3e-49 Score=380.42 Aligned_cols=225 Identities=20% Similarity=0.263 Sum_probs=182.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+|+|+..+ +..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 1 mI~~~~lsk~y~~~~-----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~- 74 (343)
T TIGR02314 1 MIKLSNITKVFHQGT-----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSN- 74 (343)
T ss_pred CEEEEEEEEEECCCC-----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH-
Confidence 489999999995310 12479999999999999999999999999999999999999999999999986532110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
..+ ...++.++|+++...++...++.++ .+.. .+.+ .+++.++++.+++. .++++.+|||||||
T Consensus 75 ---~~l----~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQ 147 (343)
T TIGR02314 75 ---SEL----TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQ 147 (343)
T ss_pred ---HHH----HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence 000 1134567777666555544455433 2222 2222 23456788889986 47789999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+|||+++.+.++||+|++|++|++++.|++++
T Consensus 148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 018938 261 VKEASKL 267 (348)
Q Consensus 261 ~~~~~~~ 267 (348)
++..+..
T Consensus 228 v~~~p~~ 234 (343)
T TIGR02314 228 IFSHPKT 234 (343)
T ss_pred HHcCCCc
Confidence 8765433
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.2e-49 Score=379.02 Aligned_cols=216 Identities=22% Similarity=0.348 Sum_probs=180.8
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
..++|+++||+|+|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 38 ~~~~i~i~nl~k~y~---------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~ 108 (340)
T PRK13536 38 STVAIDLAGVSKSYG---------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR 108 (340)
T ss_pred CceeEEEEEEEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc
Confidence 346899999999994 46799999999999999999999999999999999999999999999999865321
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh--c-cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF--G-VAGID----PQRRAELIKVLDID--LSWRMHKVSDG 177 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgG 177 (348)
. ...++.++|+++...++..+++.+++. . ..+.. .++..++++.+++. .++++.+||||
T Consensus 109 ~------------~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G 176 (340)
T PRK13536 109 A------------RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGG 176 (340)
T ss_pred h------------HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHH
Confidence 0 123445677766655555555554331 1 12222 13355778888886 47789999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+||+||+++|++|||||||+||||.++..++++|+++.+ .|.|||++||+++++..+||+|++|++|++++.|+
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~ 255 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999975 59999999999999999999999999999999999
Q ss_pred hhHHHHh
Q 018938 258 MDKVKEA 264 (348)
Q Consensus 258 ~~~~~~~ 264 (348)
++++...
T Consensus 256 ~~~l~~~ 262 (340)
T PRK13536 256 PHALIDE 262 (340)
T ss_pred HHHHHhh
Confidence 9998653
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-49 Score=377.81 Aligned_cols=216 Identities=23% Similarity=0.356 Sum_probs=183.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ +++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++....
T Consensus 3 ~l~i~~l~~~~~--------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-- 72 (356)
T PRK11650 3 GLKLQAVRKSYD--------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-- 72 (356)
T ss_pred EEEEEeEEEEeC--------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC--
Confidence 699999999993 1367999999999999999999999999999999999999999999999998653211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
..++.++|++++..+++.+++.+++ ++.. +.. ..++.++++.+++. .++++.+|||||||
T Consensus 73 -----------~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~Q 141 (356)
T PRK11650 73 -----------PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQ 141 (356)
T ss_pred -----------HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHH
Confidence 1124567776666666666665543 3321 222 23456788889986 47889999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||++||+.++..+.+.|+++.++.|.|+|+||||++++..+||++++|++|+++..|++++
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 018938 261 VKEASK 266 (348)
Q Consensus 261 ~~~~~~ 266 (348)
+...+.
T Consensus 222 ~~~~p~ 227 (356)
T PRK11650 222 VYEKPA 227 (356)
T ss_pred HHhCCc
Confidence 877654
No 22
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-49 Score=376.46 Aligned_cols=216 Identities=22% Similarity=0.328 Sum_probs=183.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++....
T Consensus 5 ~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~- 74 (351)
T PRK11432 5 NFVVLKNITKRFG---------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS- 74 (351)
T ss_pred cEEEEEeEEEEEC---------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-
Confidence 5899999999994 467999999999999999999999999999999999999999999999998653211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
..++.++|++++..+++.+++.++ .++.. +.. .+++.++++.+++. .++++.+||||||
T Consensus 75 ------------~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~ 142 (351)
T PRK11432 75 ------------IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQ 142 (351)
T ss_pred ------------HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 123456777666666666665543 33322 222 23566788888886 4788999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|||||||++||+..+.++.+.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~ 222 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999998777999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 018938 260 KVKEASK 266 (348)
Q Consensus 260 ~~~~~~~ 266 (348)
++...+.
T Consensus 223 ~~~~~p~ 229 (351)
T PRK11432 223 ELYRQPA 229 (351)
T ss_pred HHHhCCC
Confidence 9877654
No 23
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.2e-49 Score=376.56 Aligned_cols=216 Identities=24% Similarity=0.342 Sum_probs=184.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ...+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++....
T Consensus 3 ~~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~- 72 (353)
T TIGR03265 3 PYLSIDNIRKRFG---------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP- 72 (353)
T ss_pred cEEEEEEEEEEeC---------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-
Confidence 4799999999994 367999999999999999999999999999999999999999999999998653211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
..++.++|++++..+++.+++.+++ ++.. +.+ ..++.++++.+++. .++++.+||||||
T Consensus 73 ------------~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~ 140 (353)
T TIGR03265 73 ------------PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQ 140 (353)
T ss_pred ------------HHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHH
Confidence 1234577776666666666665443 3322 222 24567889999986 4788999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~ 220 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQ 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999998777999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 018938 260 KVKEASK 266 (348)
Q Consensus 260 ~~~~~~~ 266 (348)
++.+.+.
T Consensus 221 ~~~~~p~ 227 (353)
T TIGR03265 221 EIYRHPA 227 (353)
T ss_pred HHHhCCC
Confidence 9987654
No 24
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1e-48 Score=373.41 Aligned_cols=282 Identities=19% Similarity=0.232 Sum_probs=200.6
Q ss_pred CCCeEEEeceEEEecCCCCC----CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 27 SKPTVEINALKFTYPGIDGH----PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~----~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
..++|+++||+++|+...+. ...+...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 34689999999999631100 00013579999999999999999999999999999999999999999999999986
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc---c-CCCCH----HHHHHHHHHcCCC---cC
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG---V-AGIDP----QRRAELIKVLDID---LS 168 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~---~-~~~~~----~~~~~~l~~l~l~---~~ 168 (348)
+...... . ...+++.++|++|+. .+++.++..+.+ +. . ...+. +++.++++.+++. .+
T Consensus 85 i~~~~~~----~----~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~ 156 (331)
T PRK15079 85 LLGMKDD----E----WRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN 156 (331)
T ss_pred CCcCCHH----H----HHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhc
Confidence 5321100 0 011234566665553 233344444332 11 1 11222 3456788888884 36
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+++++|||||+|||+|||||+.+|++|||||||++||+.++.+++++|+++.++.|.|||+||||++++..+||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 78999999999999999999999999999999999999999999999999987679999999999999999999999999
Q ss_pred CCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHHHHH-HHHHHHhCCCCCcccCCCCCccccChHHHH
Q 018938 249 HGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERK-RRRERKASGLPEFDKQIHGSRVTGDPAQAA 316 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (348)
+|++++.|+++++...+.+.+...+............. .......+..|.....+.||++..+.+...
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~gc~f~~rc~~~~ 305 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLERNKTIQLLEGELPSPINPPSGCVFRTRCPIAG 305 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHHHHHhhCCCcccccccccccccCCCCCCCCcCCCCCCCCCCCCcchh
Confidence 99999999999998765554433222211110000000 000011233444445567888887655433
No 25
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-49 Score=343.90 Aligned_cols=222 Identities=23% Similarity=0.286 Sum_probs=181.5
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC-----ceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP-----EMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~-----G~i~i~G~~ 102 (348)
.+.++++||++.| |.+.+|++||++|+++++++||||||||||||||++..+....+ |+|.++|++
T Consensus 5 ~~~~~~~~l~~yY---------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~n 75 (253)
T COG1117 5 IPAIEVRDLNLYY---------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKN 75 (253)
T ss_pred cceeEecceeEEE---------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCee
Confidence 3579999999999 46889999999999999999999999999999999999877666 788888887
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CCCCH----HHHHHHHHHcCCC------cCcc
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AGIDP----QRRAELIKVLDID------LSWR 170 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~l~~l~l~------~~~~ 170 (348)
++... + ....+|+++++++|.+.+++....+++.++. .+... +.+++.|+...|. +++.
T Consensus 76 i~~~~-------~--d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s 146 (253)
T COG1117 76 IYDPK-------V--DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKS 146 (253)
T ss_pred ccCCC-------C--CHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCC
Confidence 65431 1 1235788999998777666633345555553 23222 2233344443331 4566
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
...||||||||++|||||+.+|+|||||||||+|||.+..+|.++|.++.+ .-|||+|||+|..+.+++|+++++..|
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G 224 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLG 224 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhccc
Confidence 788999999999999999999999999999999999999999999999974 579999999999999999999999999
Q ss_pred EEeeecChhHHHHhhhhhh
Q 018938 251 KLQLAMPMDKVKEASKLSL 269 (348)
Q Consensus 251 ~i~~~g~~~~~~~~~~~~~ 269 (348)
++++.|++++++..+....
T Consensus 225 ~LvE~g~T~~iF~~P~~~~ 243 (253)
T COG1117 225 ELVEFGPTDKIFTNPKHKR 243 (253)
T ss_pred EEEEEcCHHhhhcCccHHH
Confidence 9999999999998776543
No 26
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-48 Score=353.70 Aligned_cols=248 Identities=23% Similarity=0.273 Sum_probs=201.1
Q ss_pred CeEEEeceEEEecCCCCCCCCC-CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPG-STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g-~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
++++++||++.|+...+ .... ...|++||||+|++||++||+|+||||||||-|+|+|++.|++|+|.+.|+++..-
T Consensus 3 ~ll~v~~l~k~f~~~~~-~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~- 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG-FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL- 80 (268)
T ss_pred ceEEEeccEEEEecccc-cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc-
Confidence 57999999999964211 0001 24799999999999999999999999999999999999999999999998753110
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQI 184 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~l 184 (348)
. .....+++.++++.+|+. ..+++++|||||+||++|
T Consensus 81 ------------------------~----------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I 120 (268)
T COG4608 81 ------------------------S----------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120 (268)
T ss_pred ------------------------c----------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence 0 000134577888888875 478999999999999999
Q ss_pred HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHh
Q 018938 185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 264 (348)
||||+.+|+++++|||+|+||...+.+++++|.++.++.|.|.++||||+..+..+||||++|+.|+|++.|+.++++..
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHHHH
Q 018938 265 SKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVR 318 (348)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (348)
+.+.+.+.+...........+..+.....+.+|.....+.||+|+++.+.+...
T Consensus 201 p~HpYTk~Ll~a~p~~~p~~~~~~~~~~~ge~p~~~~~p~gC~f~~RCp~a~~~ 254 (268)
T COG4608 201 PLHPYTKALLSAVPVPDPRLRRKRRIPLEGEVPSPINPPSGCRFHPRCPYAMEI 254 (268)
T ss_pred CCCHHHHHHHHhCCccchhhhhhhhhhhccCCCCCCcCCcCCcccCCcchhhhh
Confidence 888777665544432211111111222345677777778899999887665554
No 27
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-49 Score=349.79 Aligned_cols=280 Identities=17% Similarity=0.275 Sum_probs=216.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|++++|+|+| |++.|++|+||++++|+++|++|||||||||++|+|+|++.|++|.|.|+|.++..
T Consensus 2 ~L~ie~vtK~F---------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---- 68 (300)
T COG4152 2 ALEIEGVTKSF---------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---- 68 (300)
T ss_pred ceEEecchhcc---------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----
Confidence 58999999999 46899999999999999999999999999999999999999999999999976421
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH---hccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI---FGVAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.....++|.+.+..++..+++.+.+ ..+.+... .+...+++++++. ..+++.+||.|++|
T Consensus 69 -----------~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQ 137 (300)
T COG4152 69 -----------EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQ 137 (300)
T ss_pred -----------hhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhH
Confidence 2345678877777777777776533 23455543 3456789999886 45689999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
++.+..+++++|+++|||||||||||.+.+.+.+.+.++. +.|.|||++||.|+.++++||++++|++|+.+..|+.++
T Consensus 138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk-~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ 216 (300)
T COG4152 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK-EEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216 (300)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH-hcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHH
Confidence 9999999999999999999999999999999999999986 569999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCC-Cccc--c-ChHHHHHHHhhccccccccceeecCc
Q 018938 261 VKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHG-SRVT--G-DPAQAAVRVMNNGWAAGRLHSTVAGE 336 (348)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (348)
+......... ++... ..........++-.......| +++. . +.++..-...+....+..+..+.|+|
T Consensus 217 ir~~~Gkk~~-----~ies~----~s~eeL~~ipgi~~~~~~~~G~~~i~ie~e~~a~~ifq~~a~~g~i~~Fe~~~PsL 287 (300)
T COG4152 217 IRRSFGKKRL-----VIESD----LSLEELANIPGILKITETKDGSWRIQIENETVAREIFQEVARDGYIQRFELQEPSL 287 (300)
T ss_pred HHHhcCCceE-----EEecc----CchHHHhcCCCceeeeeccCCceEeecccchHHHHHHHHHhccceeEEEeecCCCH
Confidence 9864321100 01100 001112223344444443444 3322 1 23333334445566677999999999
Q ss_pred ccccccc
Q 018938 337 ENFVLST 343 (348)
Q Consensus 337 e~~~~~~ 343 (348)
+|+|+..
T Consensus 288 ~diFi~~ 294 (300)
T COG4152 288 HDIFIEK 294 (300)
T ss_pred HHHHHHH
Confidence 9999864
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-48 Score=356.26 Aligned_cols=216 Identities=19% Similarity=0.263 Sum_probs=174.1
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~-- 69 (235)
T cd03261 1 IELRGLTKSFG---------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSE-- 69 (235)
T ss_pred CeEEEEEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccCh--
Confidence 47899999994 3579999999999999999999999999999999999999999999999976432110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.. ...+++.++|+++....+...+..+.+ +.. ..... +++.++++.+++. .++++.+|||||||
T Consensus 70 --~~----~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 143 (235)
T cd03261 70 --AE----LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKK 143 (235)
T ss_pred --hh----HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 00 012334566666554444444544432 221 11222 3456678888885 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||++++|++|++++.|++++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999876568999999999999999999999999999999998887
Q ss_pred HHH
Q 018938 261 VKE 263 (348)
Q Consensus 261 ~~~ 263 (348)
+..
T Consensus 224 ~~~ 226 (235)
T cd03261 224 LRA 226 (235)
T ss_pred HcC
Confidence 653
No 29
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.7e-48 Score=368.11 Aligned_cols=283 Identities=21% Similarity=0.334 Sum_probs=206.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+++++|++|+|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~---------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~-- 70 (301)
T TIGR03522 2 SIRVSSLTKLYG---------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP-- 70 (301)
T ss_pred EEEEEEEEEEEC---------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh--
Confidence 589999999994 467999999999999999999999999999999999999999999999997653210
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
...++.++|.++...++..++..+++. ...+.. .++..++++.+++. .++++..|||||||
T Consensus 71 ----------~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 140 (301)
T TIGR03522 71 ----------KEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQ 140 (301)
T ss_pred ----------HHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHH
Confidence 123445677766655555555554431 112222 23567788889986 47789999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+++|++|||||||+|||+.++..++++|++++ + +.|||++||+++++..+||||++|++|++++.|++++
T Consensus 141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 3 7999999999999999999999999999999999998
Q ss_pred HHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCccc-CCCCCccc--c---ChHHHHHHHhhccccccccceeec
Q 018938 261 VKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDK-QIHGSRVT--G---DPAQAAVRVMNNGWAAGRLHSTVA 334 (348)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~ 334 (348)
+........+ . +....... ........++..... ......+. . ...++...+...++.+..+....+
T Consensus 219 ~~~~~~~~~~---~--i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (301)
T TIGR03522 219 LSAANKKQVI---E--VEFEEQID--LQLFETLEEISSVKNTGGNTWKLTFETPNDTRPEIFKLAQQKGLKLISLQQNEK 291 (301)
T ss_pred HHHhcCCceE---E--EEecCcch--hHHHhhccccceeeecCCCeEEEEEcCccchHHHHHHHHHHCCCceEEEEeCCC
Confidence 8653211000 0 00000000 000011111111111 01111221 1 124455555667888888999999
Q ss_pred Cccccccc
Q 018938 335 GEENFVLS 342 (348)
Q Consensus 335 ~le~~~~~ 342 (348)
+||++|+.
T Consensus 292 sLe~~~~~ 299 (301)
T TIGR03522 292 NLEQVFRE 299 (301)
T ss_pred CHHHHHHH
Confidence 99999975
No 30
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-48 Score=371.36 Aligned_cols=278 Identities=17% Similarity=0.243 Sum_probs=199.1
Q ss_pred CeEEEeceEEEecCCCCCC-CCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 29 PTVEINALKFTYPGIDGHP-PPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~-~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
++|+++||++.|+...+.. ..+...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 5799999999995311000 001257999999999999999999999999999999999999999999999998653211
Q ss_pred cccccCcccccchhhhhhhhhcCCCc--cccccchHHHHHh-c--c-CCCC----HHHHHHHHHHcCCC---cCccCCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMIF-G--V-AGID----PQRRAELIKVLDID---LSWRMHKV 174 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~--~-~~~~----~~~~~~~l~~l~l~---~~~~~~~L 174 (348)
.. . ...+++.++|++++. .++..++..+.+. . . .... .+++.++++.+++. .++++++|
T Consensus 84 ~~----~----~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~L 155 (327)
T PRK11308 84 PE----A----QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMF 155 (327)
T ss_pred HH----H----HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccC
Confidence 00 0 012334566665543 2333334332221 1 1 1112 23467888999985 37789999
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||+|||+|||||+.+|++||+||||++||+.++.+++++|+++.++.|.|||+||||++.+.++||+|++|++|+|++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999987779999999999999999999999999999999
Q ss_pred ecChhHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHH
Q 018938 255 AMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQA 315 (348)
Q Consensus 255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (348)
.|+.+++...+.+.+.+.+........... ...........|.....+.||++..+.+.+
T Consensus 236 ~g~~~~~~~~p~hpyt~~ll~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~gc~f~~rc~~~ 295 (327)
T PRK11308 236 KGTKEQIFNNPRHPYTQALLSATPRLNPDD-RRERIKLTGELPSPLNPPPGCAFNARCPRA 295 (327)
T ss_pred ECCHHHHhcCCCCHHHHHHHHhCCCcCccc-ccccccCCCCCCCCcCCCCCCCCCCCCcch
Confidence 999999987665544433222221100000 000011123334444456788887765543
No 31
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-48 Score=371.04 Aligned_cols=273 Identities=18% Similarity=0.192 Sum_probs=195.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc----CCCceEEEcCeeccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM----VEPEMVKVLGRSAFH 105 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~----~~~G~i~i~G~~~~~ 105 (348)
+|+++||++.|+... +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDES-----APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCCC-----ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence 699999999996310 12469999999999999999999999999999999999987 378999999986532
Q ss_pred cccccccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-h---ccCCCC----HHHHHHHHHHcCCC-----cCcc
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-F---GVAGID----PQRRAELIKVLDID-----LSWR 170 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~---~~~~~~----~~~~~~~l~~l~l~-----~~~~ 170 (348)
.... . .....++.++|++++. .++..++....+ . ...+.. .+++.++++.+++. .+++
T Consensus 78 ~~~~----~---~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~ 150 (326)
T PRK11022 78 ISEK----E---RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY 150 (326)
T ss_pred CCHH----H---HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 1100 0 0000112456665543 233333332211 1 111112 23467788999985 2578
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+++|||||+|||+|||||+.+|++||+||||++||+.++..++++|+++.++.|.|+|+||||++++.++||+|++|++|
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G 230 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAG 230 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999998777999999999999999999999999999
Q ss_pred EEeeecChhHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHH
Q 018938 251 KLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAA 316 (348)
Q Consensus 251 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (348)
+|++.|+++++.+.+.+.+...+...+..... . ...........|.....+.||++..+.+...
T Consensus 231 ~ive~g~~~~~~~~p~hpyt~~ll~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~gc~~~~rc~~~~ 294 (326)
T PRK11022 231 QVVETGKAHDIFRAPRHPYTQALLRALPEFAQ-D-KARLASLPGVVPGKYDRPNGCLLNPRCPYAT 294 (326)
T ss_pred EEEEECCHHHHhhCCCChHHHHHHHhCccccc-c-ccccccCCCCCCCCcCCCCCCCCCCCCcchh
Confidence 99999999999876665544333222211000 0 0001111223334444566888877655433
No 32
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.3e-48 Score=372.70 Aligned_cols=216 Identities=25% Similarity=0.379 Sum_probs=181.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ +..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus 2 ~L~i~~l~~~~~---------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-- 70 (353)
T PRK10851 2 SIEIANIKKSFG---------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-- 70 (353)
T ss_pred EEEEEEEEEEeC---------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC--
Confidence 589999999994 367999999999999999999999999999999999999999999999998653210
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC------CCC----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA------GID----PQRRAELIKVLDID--LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~----~~~~~~~l~~l~l~--~~~~~~~LSg 176 (348)
..++.++|++++..++..+++.+++ ++.. ..+ .+++.++++.+++. .++++.+|||
T Consensus 71 -----------~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSg 139 (353)
T PRK10851 71 -----------ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSG 139 (353)
T ss_pred -----------HHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence 1124566766665555555554433 3321 112 23566788889886 4778999999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|
T Consensus 140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999998777999999999999999999999999999999999
Q ss_pred ChhHHHHhhhh
Q 018938 257 PMDKVKEASKL 267 (348)
Q Consensus 257 ~~~~~~~~~~~ 267 (348)
+++++...+..
T Consensus 220 ~~~~i~~~p~~ 230 (353)
T PRK10851 220 TPDQVWREPAT 230 (353)
T ss_pred CHHHHHhCccc
Confidence 99999876543
No 33
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.7e-48 Score=373.74 Aligned_cols=217 Identities=24% Similarity=0.367 Sum_probs=183.8
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+++|+ +..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++....
T Consensus 12 ~~~L~l~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 12 SPLVELRGISKSFD---------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP 82 (375)
T ss_pred CceEEEEEEEEEEC---------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC
Confidence 45799999999994 367999999999999999999999999999999999999999999999998653211
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
..++.++|+++...+++.+++.++ .++.. +.. ..++.++++.+++. .++++.+|||||
T Consensus 83 -------------~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq 149 (375)
T PRK09452 83 -------------AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQ 149 (375)
T ss_pred -------------HHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 123456677666656666565543 33321 222 23456788888886 478899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||.+++..+||+|++|++|+++..|++
T Consensus 150 ~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~ 229 (375)
T PRK09452 150 QQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999877799999999999999999999999999999999999
Q ss_pred hHHHHhhh
Q 018938 259 DKVKEASK 266 (348)
Q Consensus 259 ~~~~~~~~ 266 (348)
+++...+.
T Consensus 230 ~~i~~~p~ 237 (375)
T PRK09452 230 REIYEEPK 237 (375)
T ss_pred HHHHhCcc
Confidence 99887654
No 34
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.6e-48 Score=376.83 Aligned_cols=216 Identities=25% Similarity=0.375 Sum_probs=180.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++....
T Consensus 2 ~~L~~~nls~~y~---------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~- 71 (402)
T PRK09536 2 PMIDVSDLSVEFG---------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS- 71 (402)
T ss_pred ceEEEeeEEEEEC---------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCC-
Confidence 4799999999994 468999999999999999999999999999999999999999999999998653211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-------CCCC---HHHHHHHHHHcCCC--cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-------AGID---PQRRAELIKVLDID--LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~---~~~~~~~l~~l~l~--~~~~~~~LS 175 (348)
...+++.++++++....+..++..+++ ++. .... .+++.++++.+++. .++++.+||
T Consensus 72 ----------~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LS 141 (402)
T PRK09536 72 ----------ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLS 141 (402)
T ss_pred ----------HHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCC
Confidence 112344566666555544455555433 211 1111 24567788989986 367899999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+++|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++.++|||+++|++|+++..
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 589999999999999999999999999999999
Q ss_pred cChhHHHHhh
Q 018938 256 MPMDKVKEAS 265 (348)
Q Consensus 256 g~~~~~~~~~ 265 (348)
|+++++....
T Consensus 221 G~~~ev~~~~ 230 (402)
T PRK09536 221 GPPADVLTAD 230 (402)
T ss_pred cCHHHHhCcH
Confidence 9999887543
No 35
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-48 Score=369.99 Aligned_cols=274 Identities=18% Similarity=0.258 Sum_probs=193.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc----CCCceEEEcCeecc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM----VEPEMVKVLGRSAF 104 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~----~~~G~i~i~G~~~~ 104 (348)
++|+++||+++|+..+ +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~~L~v~~l~~~y~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 2 PLLDIRNLTIEFKTSD-----GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred CeEEEeeeEEEEeCCC-----CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence 4799999999995311 23579999999999999999999999999999999999986 58899999998653
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-hc-----cCC---CC----HHHHHHHHHHcCCCc--
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-FG-----VAG---ID----PQRRAELIKVLDIDL-- 167 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~-----~~~---~~----~~~~~~~l~~l~l~~-- 167 (348)
..... . .....++.++|++|+.. ++...+..+.+ .. ..+ .. .+++.++++.+++..
T Consensus 77 ~~~~~----~---~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 77 RLSPR----E---RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred cCCHH----H---HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH
Confidence 21100 0 00001124566655432 22233332221 11 001 01 235667899999852
Q ss_pred ---CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 168 ---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 168 ---~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
++++++|||||+|||+|||||+.+|++|||||||++||+.++.+++++|+++.++.|.|||+||||++++..+||+|
T Consensus 150 ~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 150 DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 57899999999999999999999999999999999999999999999999997767999999999999999999999
Q ss_pred EEEcCCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHH-HHHHHHHHHhCCCCCcccCCCCCccccChHH
Q 018938 245 VYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDE-ERKRRRERKASGLPEFDKQIHGSRVTGDPAQ 314 (348)
Q Consensus 245 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (348)
++|++|+|++.|+.+++...+.+.+...+.......... .............|.....+.||+|..+.+.
T Consensus 230 ~vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~f~~rc~~ 300 (330)
T PRK15093 230 NVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEHLPIGCRLGPRCPY 300 (330)
T ss_pred EEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCCccccccccccccccCCCCCCCcccCCCCCCCCCCCcc
Confidence 999999999999999988765554433222222110000 0000001112334444445678888776553
No 36
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-48 Score=329.26 Aligned_cols=212 Identities=23% Similarity=0.380 Sum_probs=181.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|.+++|+++|+. .- =.++++|++||+++|+|||||||||||++|+|++.|.+|+|.++|.+.....+
T Consensus 1 ~l~L~~V~~~y~~----------~~-~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P- 68 (231)
T COG3840 1 MLALDDVRFSYGH----------LP-MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP- 68 (231)
T ss_pred CccccceEEeeCc----------ce-EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc-
Confidence 4678999999942 22 35789999999999999999999999999999999999999999987643322
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC-C-----CCHHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA-G-----IDPQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
..+.+++.+|++.++..+++.+++ ++.. + .++++++.++..+|+. .++.|.+|||||||
T Consensus 69 ------------~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQ 136 (231)
T COG3840 69 ------------AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQ 136 (231)
T ss_pred ------------ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHH
Confidence 234566666777777777776554 3432 1 1345677888899986 57889999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||+|+.+-+||+||||||+|||..|.+++.++.+++.+.+.|++||||.++.+.+++|+++++++|+|.+.|+.++
T Consensus 137 RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhh
Q 018938 261 VKEAS 265 (348)
Q Consensus 261 ~~~~~ 265 (348)
++...
T Consensus 217 ~~~~~ 221 (231)
T COG3840 217 LLSGK 221 (231)
T ss_pred HhccC
Confidence 87643
No 37
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-48 Score=332.80 Aligned_cols=210 Identities=21% Similarity=0.339 Sum_probs=178.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+|.|++ ++++|+||||+|++||++-|+||||||||||+|+|.+..+|+.|+|.++|.++..-.
T Consensus 1 mI~f~~V~k~Y~~--------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~-- 70 (223)
T COG2884 1 MIRFENVSKAYPG--------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLK-- 70 (223)
T ss_pred CeeehhhhhhcCC--------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccc--
Confidence 5899999999974 477999999999999999999999999999999999999999999999998764321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
..++. .+++.++.++|+..+....++.++ .+.+ .+.. .+++.++++.+|+. .+..|.+|||||||
T Consensus 71 --~~~iP----~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQ 144 (223)
T COG2884 71 --GREIP----FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQ 144 (223)
T ss_pred --ccccc----hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHH
Confidence 12232 357788888777777666666543 3332 2222 24567788888886 35679999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||+||||++++|++||.||||.+|||....++++++.++.+ .|.|||++|||.+.+.++--|++.+++|+++.+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999999999999975 6999999999999999999999999999998764
No 38
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.4e-48 Score=365.66 Aligned_cols=214 Identities=22% Similarity=0.333 Sum_probs=176.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~i~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-- 71 (303)
T TIGR01288 3 VAIDLVGVSKSYG---------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-- 71 (303)
T ss_pred cEEEEEeEEEEeC---------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc--
Confidence 4799999999994 36799999999999999999999999999999999999999999999999764211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh--c-cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF--G-VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
....++.++|+++....+..++..+.+. . ..+.+. .++.++++.+++. .++++.+||||||
T Consensus 72 ----------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~ 141 (303)
T TIGR01288 72 ----------ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMK 141 (303)
T ss_pred ----------HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHH
Confidence 0123445667666554444455544331 1 112222 2345678888886 3678999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|+++..|+++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 5899999999999999999999999999999999998
Q ss_pred HHHHh
Q 018938 260 KVKEA 264 (348)
Q Consensus 260 ~~~~~ 264 (348)
++...
T Consensus 221 ~~~~~ 225 (303)
T TIGR01288 221 ALIDE 225 (303)
T ss_pred HHHhh
Confidence 87643
No 39
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-48 Score=351.81 Aligned_cols=213 Identities=25% Similarity=0.373 Sum_probs=173.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 2 ~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~- 71 (239)
T cd03296 2 SIEVRNVSKRFG---------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV- 71 (239)
T ss_pred EEEEEeEEEEEC---------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-
Confidence 589999999995 3579999999999999999999999999999999999999999999999976421110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC----C----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI----D----PQRRAELIKVLDID--LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~----~----~~~~~~~l~~l~l~--~~~~~~~LSg 176 (348)
.++.++|+++....+...++.+.+ +.. ... . .+.+.++++.+++. .++++.+|||
T Consensus 72 ------------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 139 (239)
T cd03296 72 ------------QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSG 139 (239)
T ss_pred ------------cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCH
Confidence 012345554443333334444332 211 111 1 12345778888885 3677899999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|+|||++|||++++..+||++++|++|+++..|
T Consensus 140 G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 219 (239)
T cd03296 140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVG 219 (239)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 99999999999999999999999999999999999999999997656899999999999999999999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+++++...
T Consensus 220 ~~~~~~~~ 227 (239)
T cd03296 220 TPDEVYDH 227 (239)
T ss_pred CHHHHhcC
Confidence 98887653
No 40
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-48 Score=372.75 Aligned_cols=215 Identities=24% Similarity=0.323 Sum_probs=179.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....
T Consensus 3 ~l~i~~l~~~~~---------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-- 71 (369)
T PRK11000 3 SVTLRNVTKAYG---------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-- 71 (369)
T ss_pred EEEEEEEEEEeC---------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC--
Confidence 599999999994 357999999999999999999999999999999999999999999999998653211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
..++.++|++++..++..+++.+++ ++. .+.. .+++.++++.+++. .++++.+|||||||
T Consensus 72 -----------~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~Q 140 (369)
T PRK11000 72 -----------PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140 (369)
T ss_pred -----------HhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHH
Confidence 0123456666655555555554433 322 1222 23466788889986 47789999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||++||+.++..+++.|+++.++.|.|+|+||||++++..+||++++|++|+++..|++++
T Consensus 141 RvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999987668999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 018938 261 VKEASK 266 (348)
Q Consensus 261 ~~~~~~ 266 (348)
+...+.
T Consensus 221 i~~~p~ 226 (369)
T PRK11000 221 LYHYPA 226 (369)
T ss_pred HHhCcc
Confidence 876543
No 41
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-49 Score=348.18 Aligned_cols=219 Identities=23% Similarity=0.309 Sum_probs=180.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
+++++++|+|+|+ +..|++||||+|++||+++||||||||||||+|+|+|.++|++|+|.+.|+++..-..
T Consensus 3 ~lL~v~~l~k~FG---------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 3 PLLEVRGLSKRFG---------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP 73 (250)
T ss_pred ceeeeccceeecC---------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCH
Confidence 5799999999994 5789999999999999999999999999999999999999999999999987543221
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc------------cCCC--C----HHHHHHHHHHcCCC--c
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG------------VAGI--D----PQRRAELIKVLDID--L 167 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~--~----~~~~~~~l~~l~l~--~ 167 (348)
. + ..+..++-.+|...++..+++.++. .+ ...+ . .+++.++++.+|+. .
T Consensus 74 ~----~------iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a 143 (250)
T COG0411 74 H----R------IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA 143 (250)
T ss_pred H----H------HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh
Confidence 1 0 0112233333444455556554432 11 1111 1 13456788889986 4
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
+.+..+||+|||+|+.|||||+.+|++|+||||.+||.+....++.++|+++.++.|.||++|.|||+.+..+||||+||
T Consensus 144 ~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 144 DRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred cchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEec
Confidence 67789999999999999999999999999999999999999999999999998777899999999999999999999999
Q ss_pred cCCEEeeecChhHHHHhhh
Q 018938 248 AHGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~~~~~ 266 (348)
+.|+++++|+|+++.+++.
T Consensus 224 ~~G~~IAeG~P~eV~~dp~ 242 (250)
T COG0411 224 NYGEVIAEGTPEEVRNNPR 242 (250)
T ss_pred cCCcCcccCCHHHHhcCHH
Confidence 9999999999999987654
No 42
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9.6e-48 Score=366.71 Aligned_cols=275 Identities=18% Similarity=0.223 Sum_probs=198.7
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeecc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAF 104 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~ 104 (348)
.++|+++||++.|+... +...+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 10 ~~~L~i~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~ 84 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD-----GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL 84 (330)
T ss_pred CceEEEeCeEEEEecCC-----CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECC
Confidence 46899999999995311 2357999999999999999999999999999999999999886 999999998653
Q ss_pred ccccccccCcccccchhhh-hhhhhcCCCc--cccccchHHHHH-h---ccCCCCH----HHHHHHHHHcCCCc-----C
Q 018938 105 HDTALTSSGDLSYLGGEWR-REVAFAGFEV--PIQMDVSAEKMI-F---GVAGIDP----QRRAELIKVLDIDL-----S 168 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~-~---~~~~~~~----~~~~~~l~~l~l~~-----~ 168 (348)
..... .. ..++ +.++|++++. .++..++..+.+ . ....... +++.++++.+++.. +
T Consensus 85 ~~~~~----~~----~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~ 156 (330)
T PRK09473 85 NLPEK----EL----NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMK 156 (330)
T ss_pred cCCHH----HH----HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhc
Confidence 21100 00 0111 2466665543 233334333221 1 1111222 34567788888752 4
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+++++|||||+|||+|||||+.+|++||+||||++||+.++..++++|+++.++.|.|||+||||++.+..+||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~ 236 (330)
T PRK09473 157 MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 236 (330)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 58999999999999999999999999999999999999999999999999987779999999999999999999999999
Q ss_pred CCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHHH
Q 018938 249 HGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAV 317 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (348)
+|+|++.|+++++...+.+.+...+...+..... .........+..|.....+.||++..+.+.+..
T Consensus 237 ~G~ive~g~~~~i~~~p~~pyt~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gc~f~~rc~~~~~ 303 (330)
T PRK09473 237 AGRTMEYGNARDVFYQPSHPYSIGLLNAVPRLDA--EGESLLTIPGNPPNLLRLPKGCPFQPRCPHAME 303 (330)
T ss_pred CCEEEEECCHHHHHhCCCCHHHHHHHHhCCCccc--cccccccCCCCCCCccCCCCCCCCCCCCchhhh
Confidence 9999999999999887666554433222211000 000001112333444445678888876654443
No 43
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-47 Score=371.94 Aligned_cols=218 Identities=24% Similarity=0.348 Sum_probs=184.8
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
..++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...
T Consensus 16 ~~~~l~l~~v~~~~~---------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~ 86 (377)
T PRK11607 16 LTPLLEIRNLTKSFD---------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV 86 (377)
T ss_pred CCceEEEEeEEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC
Confidence 346799999999994 35799999999999999999999999999999999999999999999999865321
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDG 177 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgG 177 (348)
. ..++.++|++++..++..+++.+++ ++.. +.. .+++.++++.+++. .++++.+||||
T Consensus 87 ~-------------~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgG 153 (377)
T PRK11607 87 P-------------PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGG 153 (377)
T ss_pred C-------------HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHH
Confidence 0 1234577776666666666665543 3321 222 23456788888886 47889999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||++++|++|+++..|+
T Consensus 154 q~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~ 233 (377)
T PRK11607 154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcC
Confidence 99999999999999999999999999999999999999999987779999999999999999999999999999999999
Q ss_pred hhHHHHhhh
Q 018938 258 MDKVKEASK 266 (348)
Q Consensus 258 ~~~~~~~~~ 266 (348)
++++...+.
T Consensus 234 ~~~~~~~p~ 242 (377)
T PRK11607 234 PEEIYEHPT 242 (377)
T ss_pred HHHHHhCCc
Confidence 999887554
No 44
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=8.1e-48 Score=370.75 Aligned_cols=215 Identities=24% Similarity=0.343 Sum_probs=181.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC--ceEEEcCeeccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP--EMVKVLGRSAFHDT 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~--G~i~i~G~~~~~~~ 107 (348)
.|+++||+++|+ +..+|+++||+|++||+++|+|||||||||||++|+|+++|++ |+|.++|.++....
T Consensus 5 ~l~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~ 75 (362)
T TIGR03258 5 GIRIDHLRVAYG---------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75 (362)
T ss_pred EEEEEEEEEEEC---------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC
Confidence 489999999994 3579999999999999999999999999999999999999999 99999998653110
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
..++.++|+++...+++.+++.+++ ++. .+.. ..++.++++.+++. .++++.+|||||
T Consensus 76 -------------~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq 142 (362)
T TIGR03258 76 -------------PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGM 142 (362)
T ss_pred -------------HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHH
Confidence 1234566776666666666665443 332 1222 23467788889986 478899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER-GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++. |.|+|+||||++++..+||+|++|++|+++..|+
T Consensus 143 ~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 143 QQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999999999998765 8999999999999999999999999999999999
Q ss_pred hhHHHHhhh
Q 018938 258 MDKVKEASK 266 (348)
Q Consensus 258 ~~~~~~~~~ 266 (348)
++++...+.
T Consensus 223 ~~~~~~~p~ 231 (362)
T TIGR03258 223 PQALYDAPA 231 (362)
T ss_pred HHHHHhCcC
Confidence 999987653
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-48 Score=368.90 Aligned_cols=223 Identities=23% Similarity=0.299 Sum_probs=179.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+|+|+..+ +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus 1 mi~i~~l~~~y~~~~-----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 1 MIELKNISKVFPQGG-----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEK 75 (343)
T ss_pred CEEEEeEEEEeCCCC-----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHH
Confidence 489999999995200 135799999999999999999999999999999999999999999999999865321100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
. ...+++.++|++++..++...++.+.+ +. ..+... +++.++++.+++. .++++.+|||||||
T Consensus 76 ----~----~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~q 147 (343)
T PRK11153 76 ----E----LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQ 147 (343)
T ss_pred ----H----HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence 0 011234567766655444444444332 22 112222 3456788888886 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++++..+||++++|++|++++.|++++
T Consensus 148 Rv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999977668999999999999999999999999999999999998
Q ss_pred HHHhh
Q 018938 261 VKEAS 265 (348)
Q Consensus 261 ~~~~~ 265 (348)
+...+
T Consensus 228 ~~~~~ 232 (343)
T PRK11153 228 VFSHP 232 (343)
T ss_pred HHhCC
Confidence 87543
No 46
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-48 Score=347.87 Aligned_cols=210 Identities=24% Similarity=0.380 Sum_probs=171.0
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+...
T Consensus 1 i~~~~~~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---- 67 (220)
T cd03265 1 IEVENLVKKYG---------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE---- 67 (220)
T ss_pred CEEEEEEEEEC---------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC----
Confidence 47899999994 35799999999999999999999999999999999999999999999999754210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
...+++.++|+++....+...+..+.+ +. ..+.. .+++.++++.+++. .++++.+||||||||
T Consensus 68 --------~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 139 (220)
T cd03265 68 --------PREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRR 139 (220)
T ss_pred --------hHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHH
Confidence 012234456665554444444443322 21 11222 23456788889886 367889999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
|+|||||+.+|++|||||||++||+.++..++++|.++.++.|.|||++|||++++..+||++++|++|+++..++++++
T Consensus 140 ~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999998766689999999999999999999999999999988876653
No 47
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.1e-48 Score=379.11 Aligned_cols=239 Identities=25% Similarity=0.379 Sum_probs=190.7
Q ss_pred CCCeEEEeceEEEecCCCCC--CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938 27 SKPTVEINALKFTYPGIDGH--PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~--~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~ 104 (348)
..|+++++||++.|...++- +..+...+++||||+|.+||++||||+||||||||.|+|+|+++|++|.|.++|.+ .
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-L 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-c
Confidence 45789999999999742100 00134679999999999999999999999999999999999999999999999976 1
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cC-CC-C---HHHHHHHHHHcCCC---cCccCCC
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VA-GI-D---PQRRAELIKVLDID---LSWRMHK 173 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-~---~~~~~~~l~~l~l~---~~~~~~~ 173 (348)
.-. .+... ....+.++.|+++...+++..++.+.+.. .. .. . .+++.++++..++. .+++|++
T Consensus 356 ~~~----~~~~~--~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e 429 (539)
T COG1123 356 DLT----GGELR--RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE 429 (539)
T ss_pred ccc----cchhh--hhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchh
Confidence 111 11110 00112234555555556666666554321 11 11 1 23567789999986 4789999
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+|||||+.+|++||+|||||+||+..+..++++|+++.++.|.|+||||||+..+.++||||++|++|+|+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecChhHHHHhhhhhhHHH
Q 018938 254 LAMPMDKVKEASKLSLMRT 272 (348)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~ 272 (348)
+.|+.+.+++.+.+++.+.
T Consensus 510 E~G~~~~v~~~p~h~Ytr~ 528 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRK 528 (539)
T ss_pred EeCCHHHHhcCCCChHHHH
Confidence 9999999998877765543
No 48
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-48 Score=346.34 Aligned_cols=204 Identities=28% Similarity=0.422 Sum_probs=164.3
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~-- 69 (213)
T cd03259 1 LELKGLSKTYG---------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP-- 69 (213)
T ss_pred CeeeeeEEEeC---------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--
Confidence 46899999994 3579999999999999999999999999999999999999999999999986432110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
.++.++|+++....+...+..+.+ +. ..... .+++.++++.+++. .++++.+||||||||
T Consensus 70 -----------~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 138 (213)
T cd03259 70 -----------ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQR 138 (213)
T ss_pred -----------hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence 112344554443333333433322 11 11112 23456788888886 367789999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+||++++|++|++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999987656899999999999999999999999999997654
No 49
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-47 Score=350.03 Aligned_cols=216 Identities=24% Similarity=0.367 Sum_probs=172.4
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|++ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 l~~~~l~~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~- 71 (241)
T cd03256 1 IEVENLSKTYPN--------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK- 71 (241)
T ss_pred CEEeeEEEecCC--------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHh-
Confidence 468999999941 25799999999999999999999999999999999999999999999999764321100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----------C-CC---HHHHHHHHHHcCCC--cCccCCC
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----------G-ID---PQRRAELIKVLDID--LSWRMHK 173 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~-~~---~~~~~~~l~~l~l~--~~~~~~~ 173 (348)
....+++.++|+++....+...+..+.+ +... . .. .+++.++++.+++. .++++.+
T Consensus 72 -------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (241)
T cd03256 72 -------ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQ 144 (241)
T ss_pred -------HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCccc
Confidence 0011234566665554444434444332 1110 1 11 23456778888885 3678899
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|+++
T Consensus 145 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 145 LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999987666899999999999999999999999999999
Q ss_pred eecChhHHH
Q 018938 254 LAMPMDKVK 262 (348)
Q Consensus 254 ~~g~~~~~~ 262 (348)
+.++++++.
T Consensus 225 ~~~~~~~~~ 233 (241)
T cd03256 225 FDGPPAELT 233 (241)
T ss_pred eecCHHHhh
Confidence 999888764
No 50
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.5e-48 Score=346.53 Aligned_cols=207 Identities=23% Similarity=0.395 Sum_probs=165.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++|++++|++ +.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 1 ~l~~~~l~~~~~~-------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~- 72 (216)
T TIGR00960 1 MIRFEQVSKAYPG-------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRG- 72 (216)
T ss_pred CeEEEEEEEEecC-------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcCh-
Confidence 4889999999952 22469999999999999999999999999999999999999999999999976422100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.. ...+++.++|+++....+...+..+.+ +.. .+.. .+++.++++.+++. .++++.+|||||||
T Consensus 73 ---~~----~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 145 (216)
T TIGR00960 73 ---RE----IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQ 145 (216)
T ss_pred ---hH----HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 00 011345567766655444444444332 221 1111 23456788888885 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||+||||++++..+||++++|++|++
T Consensus 146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999865 489999999999999999999999999975
No 51
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.4e-47 Score=351.04 Aligned_cols=217 Identities=21% Similarity=0.334 Sum_probs=174.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+. ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 ~l~~~~l~~~~~~--------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~- 71 (243)
T TIGR02315 1 MLEVENLSKVYPN--------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRG- 71 (243)
T ss_pred CeEEEeeeeecCC--------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCH-
Confidence 4789999999941 3579999999999999999999999999999999999999999999999976422100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----------C-C---CHHHHHHHHHHcCCC--cCccCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----------G-I---DPQRRAELIKVLDID--LSWRMH 172 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~-~---~~~~~~~~l~~l~l~--~~~~~~ 172 (348)
.. ...+++.++|+++....+...+..+.+ +... . . ..+++.++++.+++. .++++.
T Consensus 72 ---~~----~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 72 ---KK----LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred ---HH----HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 00 011344566766554444444444432 2110 0 0 123456778888885 367889
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|+|||+||||++++..+||++++|++|++
T Consensus 145 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i 224 (243)
T TIGR02315 145 QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224 (243)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998766689999999999999999999999999999
Q ss_pred eeecChhHHH
Q 018938 253 QLAMPMDKVK 262 (348)
Q Consensus 253 ~~~g~~~~~~ 262 (348)
++.|+++++.
T Consensus 225 ~~~~~~~~~~ 234 (243)
T TIGR02315 225 VFDGAPSELD 234 (243)
T ss_pred EecCCHHHhC
Confidence 9999887753
No 52
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.9e-47 Score=348.77 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=170.9
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 l~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~- 70 (236)
T cd03219 1 LEVRGLTKRFG---------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH- 70 (236)
T ss_pred CeeeeeEEEEC---------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHH-
Confidence 46899999994 35799999999999999999999999999999999999999999999999764321100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--C-CC---------C----HHHHHHHHHHcCCC--cCccC
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--A-GI---------D----PQRRAELIKVLDID--LSWRM 171 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~---------~----~~~~~~~l~~l~l~--~~~~~ 171 (348)
...+..++|+++....+...+..+.+ +.. . .. . ...+.++++.+++. .++++
T Consensus 71 ---------~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 141 (236)
T cd03219 71 ---------EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA 141 (236)
T ss_pred ---------HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh
Confidence 00122355555554444444444332 211 1 10 1 22456788888885 36788
Q ss_pred CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|+|||++|||++++..+||++++|++|+
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999999999999875 58999999999999999999999999999
Q ss_pred EeeecChhHHHH
Q 018938 252 LQLAMPMDKVKE 263 (348)
Q Consensus 252 i~~~g~~~~~~~ 263 (348)
++..++++++..
T Consensus 221 i~~~~~~~~~~~ 232 (236)
T cd03219 221 VIAEGTPDEVRN 232 (236)
T ss_pred EEeecCHHHhcc
Confidence 999998887653
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-47 Score=347.29 Aligned_cols=221 Identities=23% Similarity=0.316 Sum_probs=174.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++|++++|++.. +..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 ~i~~~~l~~~~~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 1 MIELKNVSKVFGDTG-----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred CeEEecceEEccCCC-----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH
Confidence 488999999995200 012799999999999999999999999999999999999999999999999864321100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
. ....++.++|+++....+...+..+.+ +.. .... ...+.++++.+++. .++++.+|||||||
T Consensus 76 ----~----~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 147 (233)
T cd03258 76 ----E----LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQ 147 (233)
T ss_pred ----H----HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHH
Confidence 0 001234566666554444444444332 211 1222 23456788888886 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++||+++++..+||++++|++|++++.+++++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999876668999999999999999999999999999999998777
Q ss_pred HHH
Q 018938 261 VKE 263 (348)
Q Consensus 261 ~~~ 263 (348)
+..
T Consensus 228 ~~~ 230 (233)
T cd03258 228 VFA 230 (233)
T ss_pred Hhc
Confidence 643
No 54
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-47 Score=351.21 Aligned_cols=207 Identities=20% Similarity=0.307 Sum_probs=170.9
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~---------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--- 77 (257)
T PRK11247 10 GTPLLLNAVSKRYG---------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA--- 77 (257)
T ss_pred CCcEEEEEEEEEEC---------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH---
Confidence 36799999999994 357999999999999999999999999999999999999999999999886431
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQI 184 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l 184 (348)
.+++.++|+++...++...+..+.+ +........++.++++.+++. .++++.+|||||||||+|
T Consensus 78 -------------~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~l 144 (257)
T PRK11247 78 -------------EAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVAL 144 (257)
T ss_pred -------------HhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 1123345554444333334444433 222211234567788899886 367889999999999999
Q ss_pred HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||+||||++++..+||++++|++|+++..++.+
T Consensus 145 araL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999999987666899999999999999999999999999999887654
No 55
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-47 Score=356.21 Aligned_cols=221 Identities=22% Similarity=0.331 Sum_probs=175.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||++.|+... ...+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 2 ~l~~~~l~~~y~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~- 76 (287)
T PRK13637 2 SIKIENLTHIYMEGT----PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV- 76 (287)
T ss_pred EEEEEEEEEECCCCC----ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc-
Confidence 489999999995310 002469999999999999999999999999999999999999999999999986532110
Q ss_pred cccCcccccchhhhhhhhhcCCCcc-ccccchHH-HHHhcc--CCCCH----HHHHHHHHHcCCC----cCccCCCCCHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAE-KMIFGV--AGIDP----QRRAELIKVLDID----LSWRMHKVSDG 177 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~----~~~~~~l~~l~l~----~~~~~~~LSgG 177 (348)
-...++..++|++++.. .....++. ++.++. .+... +++.++++.+++. .++++.+||||
T Consensus 77 --------~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgG 148 (287)
T PRK13637 77 --------KLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGG 148 (287)
T ss_pred --------cHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHH
Confidence 00123345666655431 11123333 333221 12222 3456788888985 36789999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
||||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||||++|++|++++.|+
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~ 228 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999976668999999999999999999999999999999999
Q ss_pred hhHHHH
Q 018938 258 MDKVKE 263 (348)
Q Consensus 258 ~~~~~~ 263 (348)
++++.+
T Consensus 229 ~~~~~~ 234 (287)
T PRK13637 229 PREVFK 234 (287)
T ss_pred HHHHHh
Confidence 998765
No 56
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-47 Score=353.44 Aligned_cols=214 Identities=26% Similarity=0.376 Sum_probs=172.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~~l~~~~l~~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~- 73 (274)
T PRK13647 3 NIIEVEDLHFRYKD--------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN- 73 (274)
T ss_pred ceEEEEEEEEEeCC--------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC-
Confidence 37999999999952 356999999999999999999999999999999999999999999999998642111
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc-ccccchHH-HHHhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAE-KMIFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
....+..++|+++... .....++. ++.++. .+.. .+++.++++.+++. .++++.+|||||
T Consensus 74 ----------~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~ 143 (274)
T PRK13647 74 ----------EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQ 143 (274)
T ss_pred ----------HHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHH
Confidence 0122344566654431 11222333 332221 1222 13456788888885 467899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||++||+.++..++++|++++++ |.|||++|||++++.++||++++|++|++++.|++
T Consensus 144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999998754 89999999999999999999999999999999998
Q ss_pred hHHH
Q 018938 259 DKVK 262 (348)
Q Consensus 259 ~~~~ 262 (348)
+++.
T Consensus 223 ~~~~ 226 (274)
T PRK13647 223 SLLT 226 (274)
T ss_pred HHhc
Confidence 7543
No 57
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=345.14 Aligned_cols=214 Identities=19% Similarity=0.248 Sum_probs=174.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-- 71 (241)
T PRK14250 3 EIEFKEVSYSSF---------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID-- 71 (241)
T ss_pred eEEEEeEEEEeC---------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC--
Confidence 589999999994 357999999999999999999999999999999999999999999999997642110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~ 183 (348)
...+++.++|.++...++. .+..+.+ +.. ......++.++++.+++. .++++.+||||||||++
T Consensus 72 ---------~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 141 (241)
T PRK14250 72 ---------VIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVS 141 (241)
T ss_pred ---------hHHhhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH
Confidence 0112334556555433332 2343332 211 111234566788889885 25778999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++.|.|||++|||++++..+||++++|++|+++..++++++..
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999876568999999999999999999999999999999999988865
Q ss_pred h
Q 018938 264 A 264 (348)
Q Consensus 264 ~ 264 (348)
.
T Consensus 222 ~ 222 (241)
T PRK14250 222 N 222 (241)
T ss_pred C
Confidence 4
No 58
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.8e-47 Score=352.32 Aligned_cols=219 Identities=16% Similarity=0.242 Sum_probs=175.4
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 6 ~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRG---------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccCh
Confidence 4799999999994 3679999999999999999999999999999999999999999999999975422110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
... ...++.++|+++....+...+..+.+ +.. ...+. .++.++++.+++. .++++.+|||||
T Consensus 77 ----~~~----~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 148 (269)
T PRK11831 77 ----SRL----YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGM 148 (269)
T ss_pred ----hhH----HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHH
Confidence 000 01223455655544444444443332 211 11122 2445678888886 367889999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||++++|++|++++.|++
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999998766689999999999999999999999999999999998
Q ss_pred hHHHHh
Q 018938 259 DKVKEA 264 (348)
Q Consensus 259 ~~~~~~ 264 (348)
+++.+.
T Consensus 229 ~~~~~~ 234 (269)
T PRK11831 229 QALQAN 234 (269)
T ss_pred HHHhcC
Confidence 887653
No 59
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-47 Score=343.24 Aligned_cols=207 Identities=26% Similarity=0.375 Sum_probs=165.1
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|++.. +.+++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~~-----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----- 70 (220)
T cd03293 1 LEVRNVSKTYGGGG-----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----- 70 (220)
T ss_pred CeEEEEEEEcCCCC-----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----
Confidence 46899999995200 01579999999999999999999999999999999999999999999999976421
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
.++.++|+++...++...+..+.+ +. ..+.. .+.+.++++.+++. .++++.+||||||||
T Consensus 71 -----------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 139 (220)
T cd03293 71 -----------PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQR 139 (220)
T ss_pred -----------ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH
Confidence 012234444433333333333322 21 11111 23456788888885 367889999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc--CCEEeeecCh
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA--HGKLQLAMPM 258 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~--~G~i~~~g~~ 258 (348)
++|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+||++++|+ +|++++.++.
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999999876668999999999999999999999999 7999987764
No 60
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-47 Score=350.90 Aligned_cols=219 Identities=21% Similarity=0.309 Sum_probs=177.0
Q ss_pred CCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938 25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104 (348)
Q Consensus 25 ~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~ 104 (348)
.+...+|+++||+++|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~~~~~~l~i~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 72 (265)
T PRK10253 2 TESVARLRGEQLTLGYG---------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ 72 (265)
T ss_pred CccccEEEEEEEEEEEC---------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhh
Confidence 34456899999999995 357999999999999999999999999999999999999999999999997542
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-C------CCC---HHHHHHHHHHcCCC--cCccC
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-A------GID---PQRRAELIKVLDID--LSWRM 171 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~------~~~---~~~~~~~l~~l~l~--~~~~~ 171 (348)
... ....+..++|++++...+...+..+.+ +.. . ... ..++.++++.+++. .++++
T Consensus 73 ~~~-----------~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 141 (265)
T PRK10253 73 HYA-----------SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141 (265)
T ss_pred hCC-----------HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc
Confidence 110 011223456665554333334444332 211 0 011 23456788888885 46789
Q ss_pred CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++..+||++++|++|+
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGK 221 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999876568999999999999999999999999999
Q ss_pred EeeecChhHHHH
Q 018938 252 LQLAMPMDKVKE 263 (348)
Q Consensus 252 i~~~g~~~~~~~ 263 (348)
+++.|+++++..
T Consensus 222 i~~~g~~~~~~~ 233 (265)
T PRK10253 222 IVAQGAPKEIVT 233 (265)
T ss_pred EEEeCCHHHHhh
Confidence 999999887654
No 61
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.8e-47 Score=341.51 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=164.2
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 i~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~-- 69 (213)
T cd03301 1 VELENVTKRFG---------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP-- 69 (213)
T ss_pred CEEEeeEEEEC---------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--
Confidence 46899999995 3579999999999999999999999999999999999999999999999986532111
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
.+..++|+++....+...+..+.+ +. ..... .+++.++++.+++. .++++.+||||||||
T Consensus 70 -----------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 138 (213)
T cd03301 70 -----------KDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQR 138 (213)
T ss_pred -----------ccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHH
Confidence 012344444443333333433322 21 11122 12456678888885 467889999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999997666899999999999999999999999999998754
No 62
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=353.65 Aligned_cols=223 Identities=22% Similarity=0.307 Sum_probs=176.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++... ...++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++......
T Consensus 2 ~l~~~~l~~~y~~~~~----~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 77 (290)
T PRK13634 2 DITFQKVEHRYQYKTP----FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEEECCCCc----ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence 3899999999953100 024699999999999999999999999999999999999999999999999865311000
Q ss_pred cccCcccccchhhhhhhhhcCCCc--cccccchHH-HHHhcc--CCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAE-KMIFGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDG 177 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG 177 (348)
.-...+++.++|++++. .+. ..++. ++.++. .+... +++.++++.+++. .++++.+||||
T Consensus 78 -------~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (290)
T PRK13634 78 -------KKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGG 149 (290)
T ss_pred -------chHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHH
Confidence 00012334566665543 122 22333 333321 12222 3456788899985 36789999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+||||++|++|++++.|+
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999977679999999999999999999999999999999999
Q ss_pred hhHHHHh
Q 018938 258 MDKVKEA 264 (348)
Q Consensus 258 ~~~~~~~ 264 (348)
++++...
T Consensus 230 ~~~~~~~ 236 (290)
T PRK13634 230 PREIFAD 236 (290)
T ss_pred HHHHhcC
Confidence 9887653
No 63
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.5e-47 Score=358.66 Aligned_cols=201 Identities=22% Similarity=0.379 Sum_probs=168.0
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ...+++.++|++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------------~~~~~~~i~~~~ 72 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE------------PRKVRRSIGIVP 72 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC------------HHHHHhhcEEec
Confidence 46799999999999999999999999999999999999999999999999764221 012345577776
Q ss_pred CCccccccchHHHHHh-c--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccC
Q 018938 131 FEVPIQMDVSAEKMIF-G--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201 (348)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPt 201 (348)
+....+..+++.+.+. . ..+.. .+++.++++.+++. .++++.+|||||||||+||+||+++|++|||||||
T Consensus 73 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 6655555555554331 1 12222 23467788999986 46789999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHh
Q 018938 202 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 202 sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 264 (348)
+|||+.++..++++|+++++ .|.|||++||+++++..+||++++|++|+++..|+++++...
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999999875 489999999999999999999999999999999999988653
No 64
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7.2e-47 Score=338.56 Aligned_cols=203 Identities=25% Similarity=0.336 Sum_probs=167.3
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~---------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---- 67 (208)
T cd03268 1 LKTNDLTKTYG---------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---- 67 (208)
T ss_pred CEEEEEEEEEC---------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch----
Confidence 47899999994 35799999999999999999999999999999999999999999999999753210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC 185 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA 185 (348)
..+++.++|+++....+...+..+.+ +. ......+++.++++.+++. .++++.+|||||||||+||
T Consensus 68 ---------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 138 (208)
T cd03268 68 ---------IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIA 138 (208)
T ss_pred ---------HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHH
Confidence 11234456665554444444444432 21 1222445677888999885 3678899999999999999
Q ss_pred HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999875 5899999999999999999999999999998654
No 65
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=352.22 Aligned_cols=218 Identities=23% Similarity=0.307 Sum_probs=176.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++|++++|++ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 4 ~~l~~~~l~~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 4 YILKVEELNYNYSD--------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRK 75 (283)
T ss_pred ceEEEEeEEEEeCC--------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcc
Confidence 47999999999952 3579999999999999999999999999999999999999999999999986521100
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
....++..++|++++.. .....+..+.+ +.. .+.. .+++.++++.+++. .++++.+|||||
T Consensus 76 ---------~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~ 146 (283)
T PRK13636 76 ---------GLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQ 146 (283)
T ss_pred ---------hHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHH
Confidence 00123445666655431 11223333322 211 1222 13456778888886 367899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
|||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+|||+++|++|++++.|++
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~ 226 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999776689999999999999999999999999999999999
Q ss_pred hHHHH
Q 018938 259 DKVKE 263 (348)
Q Consensus 259 ~~~~~ 263 (348)
+++..
T Consensus 227 ~~~~~ 231 (283)
T PRK13636 227 KEVFA 231 (283)
T ss_pred HHHhc
Confidence 88765
No 66
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-47 Score=350.09 Aligned_cols=217 Identities=24% Similarity=0.381 Sum_probs=175.6
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
.+++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 8 ~~~~l~i~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 78 (265)
T PRK10575 8 SDTTFALRNVSFRVP---------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW 78 (265)
T ss_pred CCceEEEeeEEEEEC---------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhC
Confidence 346899999999994 35799999999999999999999999999999999999999999999999764211
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC---C----CC---HHHHHHHHHHcCCC--cCccCCC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA---G----ID---PQRRAELIKVLDID--LSWRMHK 173 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~----~~---~~~~~~~l~~l~l~--~~~~~~~ 173 (348)
.. ..+++.++|+++........+..+.+ +... . .. .+++.++++.+++. .++++.+
T Consensus 79 ~~-----------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 147 (265)
T PRK10575 79 SS-----------KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDS 147 (265)
T ss_pred CH-----------HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc
Confidence 10 12233456655543333334443332 2110 0 11 23456788888885 4678999
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||+++++..+||++++|++|+++
T Consensus 148 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999999999987666899999999999999999999999999999
Q ss_pred eecChhHHHH
Q 018938 254 LAMPMDKVKE 263 (348)
Q Consensus 254 ~~g~~~~~~~ 263 (348)
+.++++++..
T Consensus 228 ~~~~~~~~~~ 237 (265)
T PRK10575 228 AQGTPAELMR 237 (265)
T ss_pred EecCHHHhcC
Confidence 9998887654
No 67
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=347.41 Aligned_cols=216 Identities=17% Similarity=0.225 Sum_probs=172.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 4 ~~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 4 PLLSVSGLMMRFG---------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred ceEEEeeEEEEEC---------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH
Confidence 5799999999994 3679999999999999999999999999999999999999999999999986432110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc------------CC------CC---HHHHHHHHHHcCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV------------AG------ID---PQRRAELIKVLDID 166 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~------~~---~~~~~~~l~~l~l~ 166 (348)
. ...+..++|+++....+...+..+.+ ++. .. .. ...+.++++.+++.
T Consensus 75 ~----------~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 144 (255)
T PRK11300 75 H----------QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL 144 (255)
T ss_pred H----------HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh
Confidence 0 00112244444444444444443322 110 00 00 12345677888875
Q ss_pred --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++||+++++..+||++
T Consensus 145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 467899999999999999999999999999999999999999999999999987655899999999999999999999
Q ss_pred EEEcCCEEeeecChhHHHH
Q 018938 245 VYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 245 ~~l~~G~i~~~g~~~~~~~ 263 (348)
++|++|++++.++++++..
T Consensus 225 ~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 225 YVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred EEEECCeEEecCCHHHHhh
Confidence 9999999999999887754
No 68
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-46 Score=345.31 Aligned_cols=214 Identities=23% Similarity=0.353 Sum_probs=173.0
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|++ .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-- 70 (242)
T cd03295 1 IEFENVTKRYGG--------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP-- 70 (242)
T ss_pred CEEEEEEEEeCC--------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh--
Confidence 468999999942 1579999999999999999999999999999999999999999999999976421100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCCc----CccCCCCCHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDIDL----SWRMHKVSDGQR 179 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~~----~~~~~~LSgGqr 179 (348)
..++..++|+++....+...+..+.+ +. ..+.. .+.+.++++.+++.. ++++.+||||||
T Consensus 71 ---------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~ 141 (242)
T cd03295 71 ---------VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQ 141 (242)
T ss_pred ---------HHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHH
Confidence 11233456665554444444444332 21 11222 234567888888863 567899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||+++++..+||++++|++|++++.++++
T Consensus 142 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 142 QRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999987655899999999999999999999999999999999888
Q ss_pred HHHH
Q 018938 260 KVKE 263 (348)
Q Consensus 260 ~~~~ 263 (348)
++.+
T Consensus 222 ~~~~ 225 (242)
T cd03295 222 EILR 225 (242)
T ss_pred HHHc
Confidence 7754
No 69
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.2e-46 Score=343.60 Aligned_cols=213 Identities=25% Similarity=0.467 Sum_probs=171.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~-- 69 (236)
T TIGR03864 1 ALEVAGLSFAYG---------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAP-- 69 (236)
T ss_pred CEEEEeeEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCC--
Confidence 478999999994 357999999999999999999999999999999999999999999999997542110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
....+.++|.++....+...+..+.+ +. ..... .+.+.++++.+++. .++++.+|||||+|
T Consensus 70 ----------~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 139 (236)
T TIGR03864 70 ----------RAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRR 139 (236)
T ss_pred ----------hhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHH
Confidence 01112455555544333334443332 11 11222 23456778888885 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
|++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++.. ||++++|++|++++.+++++
T Consensus 140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999876568999999999999975 99999999999999998887
Q ss_pred HHHh
Q 018938 261 VKEA 264 (348)
Q Consensus 261 ~~~~ 264 (348)
+...
T Consensus 219 ~~~~ 222 (236)
T TIGR03864 219 LRGA 222 (236)
T ss_pred HHHH
Confidence 7653
No 70
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=352.23 Aligned_cols=222 Identities=22% Similarity=0.305 Sum_probs=174.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+++|+... +..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 mi~~~~v~~~y~~~~----~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~- 75 (288)
T PRK13643 1 MIKFEKVNYTYQPNS----PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK- 75 (288)
T ss_pred CEEEEEEEEEeCCCC----cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccc-
Confidence 489999999995310 011369999999999999999999999999999999999999999999999986521100
Q ss_pred cccCcccccchhhhhhhhhcCCCc--cccccchHHHHHhccC--CCCH----HHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMIFGVA--GIDP----QRRAELIKVLDID---LSWRMHKVSDGQ 178 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~----~~~~~~l~~l~l~---~~~~~~~LSgGq 178 (348)
......+++.++|++++. .++.....+++.++.. +... .++.++++.+++. .++.+.+|||||
T Consensus 76 ------~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 149 (288)
T PRK13643 76 ------QKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQ 149 (288)
T ss_pred ------cccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHH
Confidence 000112345566665543 2222222233333221 2222 3456778888984 367889999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||||++|++|++++.|++
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999875 489999999999999999999999999999999999
Q ss_pred hHHHH
Q 018938 259 DKVKE 263 (348)
Q Consensus 259 ~~~~~ 263 (348)
+++..
T Consensus 229 ~~~~~ 233 (288)
T PRK13643 229 SDVFQ 233 (288)
T ss_pred HHHHc
Confidence 98865
No 71
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=365.58 Aligned_cols=231 Identities=19% Similarity=0.278 Sum_probs=180.3
Q ss_pred CeEEEeceEEEecCCCCC---------------CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC
Q 018938 29 PTVEINALKFTYPGIDGH---------------PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP 93 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~---------------~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~ 93 (348)
.+|+++||+|.|+....+ +..+...+|+++||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 368888888888642100 00123348999999999999999999999999999999999999999
Q ss_pred ceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC
Q 018938 94 EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID 166 (348)
Q Consensus 94 G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~ 166 (348)
|+|.++|.++...... . .....++.++|++++..++...+..+++ +.. .+.. .+++.++++.+++.
T Consensus 83 G~I~i~G~~i~~~~~~----~---l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~ 155 (400)
T PRK10070 83 GQVLIDGVDIAKISDA----E---LREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE 155 (400)
T ss_pred CEEEECCEECCcCCHH----H---HHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999865321100 0 0001123466766665555555554433 221 1222 23456788889986
Q ss_pred --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.++.++.|+|||+||||++++..+||++
T Consensus 156 ~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 467899999999999999999999999999999999999999999999999987666899999999999999999999
Q ss_pred EEEcCCEEeeecChhHHHHhhh
Q 018938 245 VYVAHGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 245 ~~l~~G~i~~~g~~~~~~~~~~ 266 (348)
++|++|+++..|+++++...+.
T Consensus 236 ~vL~~G~i~~~g~~~~l~~~~~ 257 (400)
T PRK10070 236 AIMQNGEVVQVGTPDEILNNPA 257 (400)
T ss_pred EEEECCEEEecCCHHHHHhCcc
Confidence 9999999999999998876543
No 72
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-46 Score=343.62 Aligned_cols=216 Identities=21% Similarity=0.325 Sum_probs=174.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 ~l~~~~l~~~~~---------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~- 70 (240)
T PRK09493 1 MIEFKNVSKHFG---------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKV- 70 (240)
T ss_pred CEEEEeEEEEEC---------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCh-
Confidence 478999999994 3579999999999999999999999999999999999999999999999986432100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
....+++.++|.++....+...+..+.+ +.. .... .+++.++++.+++. .++++.+||||||
T Consensus 71 --------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 142 (240)
T PRK09493 71 --------DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQ 142 (240)
T ss_pred --------hHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHH
Confidence 0012234456665554444334443322 211 1112 13456788888885 3678899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
||++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++++.|+++
T Consensus 143 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 143 QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQ 221 (240)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHH
Confidence 999999999999999999999999999999999999999864 4899999999999999999999999999999999988
Q ss_pred HHHHh
Q 018938 260 KVKEA 264 (348)
Q Consensus 260 ~~~~~ 264 (348)
++.+.
T Consensus 222 ~~~~~ 226 (240)
T PRK09493 222 VLIKN 226 (240)
T ss_pred HHhcC
Confidence 87653
No 73
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-46 Score=350.88 Aligned_cols=218 Identities=21% Similarity=0.348 Sum_probs=175.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|++. +...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 ~~l~~~~l~~~~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~- 75 (279)
T PRK13650 3 NIIEVKNLTFKYKED------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEN- 75 (279)
T ss_pred ceEEEEeEEEEcCCC------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCc-
Confidence 479999999999531 1246999999999999999999999999999999999999999999999998652210
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
....++.++|++++.. .....+..+ +.++. .+.+. +++.++++.+++. .++.+.+|||||
T Consensus 76 ----------~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq 145 (279)
T PRK13650 76 ----------VWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQ 145 (279)
T ss_pred ----------HHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHH
Confidence 0123345666655432 222334433 32221 12222 3456788889986 467899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++. +||++++|++|+++..|++
T Consensus 146 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~ 224 (279)
T PRK13650 146 KQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTP 224 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999997666999999999999995 7999999999999999999
Q ss_pred hHHHHh
Q 018938 259 DKVKEA 264 (348)
Q Consensus 259 ~~~~~~ 264 (348)
+++...
T Consensus 225 ~~~~~~ 230 (279)
T PRK13650 225 RELFSR 230 (279)
T ss_pred HHHHcC
Confidence 887654
No 74
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-47 Score=319.99 Aligned_cols=228 Identities=23% Similarity=0.330 Sum_probs=187.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
+.|+++||.|+| |...+|++|||+-.+|+++.|||.|||||||+||||.=+..|+.|.|.++|+.+.....
T Consensus 5 ~~l~v~dlHK~~---------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 5 NALEVEDLHKRY---------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred cceehhHHHhhc---------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeC
Confidence 469999999999 45789999999999999999999999999999999999999999999999986532211
Q ss_pred ccccCcccc----cchhhhhhhhhcCCCccccccchHHHHHh-cc---CCCC----HHHHHHHHHHcCCC--cCccCCCC
Q 018938 109 LTSSGDLSY----LGGEWRREVAFAGFEVPIQMDVSAEKMIF-GV---AGID----PQRRAELIKVLDID--LSWRMHKV 174 (348)
Q Consensus 109 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~L 174 (348)
..+.+.- .-+.++.+.+++++.+.++..++.-++.. .. .+.+ .+++..++..+|+. .+.+|..|
T Consensus 76 --~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~L 153 (256)
T COG4598 76 --KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHL 153 (256)
T ss_pred --CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcccc
Confidence 1121111 11234566777777777766666544332 11 1222 24556788889986 36789999
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||+||++|||||+.+|+++|+|||||+|||+...+++..+++++++ |+|+++|||.|.|+..++++|++|++|.|-+
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 999999999999999999999999999999999999999999999865 9999999999999999999999999999999
Q ss_pred ecChhHHHHhhhhh
Q 018938 255 AMPMDKVKEASKLS 268 (348)
Q Consensus 255 ~g~~~~~~~~~~~~ 268 (348)
.|+|++++.++...
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999876543
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-46 Score=339.96 Aligned_cols=212 Identities=20% Similarity=0.264 Sum_probs=168.4
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+......
T Consensus 1 l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~- 70 (222)
T cd03224 1 LEVENLNAGYG---------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH- 70 (222)
T ss_pred CEEeeEEeecC---------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHH-
Confidence 47899999994 35799999999999999999999999999999999999999999999999764221100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC--CHHHHHHHHHHc-CCC--cCccCCCCCHHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI--DPQRRAELIKVL-DID--LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~--~~~~~~~~l~~l-~l~--~~~~~~~LSgGqrQRv 182 (348)
...++.++|+++....+...+..+.+ +.. ... ......++++.+ ++. .++++.+|||||||||
T Consensus 71 ---------~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 71 ---------ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQML 141 (222)
T ss_pred ---------HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHH
Confidence 01123456665554444444444332 221 111 122345566666 343 4678899999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 262 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 262 (348)
+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999865 5899999999999999999999999999999988877654
No 76
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=9.3e-47 Score=340.15 Aligned_cols=209 Identities=27% Similarity=0.429 Sum_probs=167.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++|++++|++.. ...++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ~l~~~~v~~~~~~~~-----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--- 72 (218)
T cd03266 1 MITADALTKRFRDVK-----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE--- 72 (218)
T ss_pred CeEEEEEEEecCCCC-----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC---
Confidence 478999999995310 012799999999999999999999999999999999999999999999999764211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
...+++.++|.++...++...+..+.+ +. ..+.. ..++.++++.+++. .++++.+|||||||
T Consensus 73 ---------~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 143 (218)
T cd03266 73 ---------PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQ 143 (218)
T ss_pred ---------HHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHH
Confidence 012344566666555444444444332 11 11222 23456788889886 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|++|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++++.|
T Consensus 144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999864 5899999999999999999999999999997643
No 77
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=345.46 Aligned_cols=214 Identities=27% Similarity=0.405 Sum_probs=173.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 2 ~l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~- 71 (258)
T PRK13548 2 MLEARNLSVRLG---------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP- 71 (258)
T ss_pred eEEEEeEEEEeC---------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH-
Confidence 589999999994 3579999999999999999999999999999999999999999999999975421100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC----CHHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI----DPQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
..+++.++|+++........+..+.+ +.. ... ....+.++++.+++. .++.+.+|||||||
T Consensus 72 ----------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~q 141 (258)
T PRK13548 72 ----------AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQ 141 (258)
T ss_pred ----------HHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 11223455655544333344444432 221 111 123456788888885 36789999999999
Q ss_pred HHHHHHHHc------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 181 RVQICMGLL------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 181 Rv~lAraL~------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||+|||||+ .+|++|||||||+|||+.++..+.++|+++.++.|.|||++|||++++..+||++++|++|+++.
T Consensus 142 rv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 142 RVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred HHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999 59999999999999999999999999999874568999999999999999999999999999999
Q ss_pred ecChhHHHH
Q 018938 255 AMPMDKVKE 263 (348)
Q Consensus 255 ~g~~~~~~~ 263 (348)
.++++++..
T Consensus 222 ~~~~~~~~~ 230 (258)
T PRK13548 222 DGTPAEVLT 230 (258)
T ss_pred eCCHHHHhC
Confidence 998877654
No 78
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.5e-47 Score=337.14 Aligned_cols=199 Identities=26% Similarity=0.402 Sum_probs=160.9
Q ss_pred EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938 32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111 (348)
Q Consensus 32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~ 111 (348)
+++||+++|++ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~--------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------ 66 (205)
T cd03226 1 RIENISFSYKK--------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA------ 66 (205)
T ss_pred CcccEEEEeCC--------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh------
Confidence 36899999942 1579999999999999999999999999999999999999999999999976421
Q ss_pred cCcccccchhhhhhhhhcCCCccc-cccchHHHHH-hcc--CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938 112 SGDLSYLGGEWRREVAFAGFEVPI-QMDVSAEKMI-FGV--AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC 185 (348)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA 185 (348)
..+++.++|.+++... ....+..+.+ +.. ......++.++++.+++. .++++.+||||||||++||
T Consensus 67 --------~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 138 (205)
T cd03226 67 --------KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIA 138 (205)
T ss_pred --------HHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHH
Confidence 0122345555444311 1122333332 221 112234667889999986 4678999999999999999
Q ss_pred HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999999865 4899999999999999999999999999974
No 79
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=7.8e-47 Score=340.64 Aligned_cols=209 Identities=28% Similarity=0.425 Sum_probs=162.6
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|++.. +.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus 1 l~~~~l~~~~~~~~-----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~- 74 (218)
T cd03255 1 IELKNLSKTYGGGG-----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK- 74 (218)
T ss_pred CeEeeeEEEecCCC-----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchh-
Confidence 46899999995200 015799999999999999999999999999999999999999999999999764221100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
. .....++.++|+++....+...+..+.+ +. ..+.. .+++.++++.+++. .++++.+||||||||
T Consensus 75 ---~---~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (218)
T cd03255 75 ---E---LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQR 148 (218)
T ss_pred ---H---HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHH
Confidence 0 0001123456665554444444444332 21 11221 23456788888886 367889999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
|+|||||+.+|++|||||||+|||+.++..+.++|++++++.|+|||+||||++++. +||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999987656899999999999997 9999999999974
No 80
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-46 Score=350.37 Aligned_cols=223 Identities=20% Similarity=0.292 Sum_probs=175.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++.. ...+++|+||||+|++||+++|+||||||||||+++|+|+++|+.|+|.++|.++.....
T Consensus 2 ~l~~~~l~~~y~~~~----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~- 76 (286)
T PRK13646 2 TIRFDNVSYTYQKGT----PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK- 76 (286)
T ss_pred EEEEEEEEEEECCCC----ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc-
Confidence 489999999995210 012469999999999999999999999999999999999999999999999986532110
Q ss_pred cccCcccccchhhhhhhhhcCCCc--cccccchHH-HHHhcc--CCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAE-KMIFGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDG 177 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG 177 (348)
......+++.++|++++. .++. .+.. ++.++. .+.+. +++.++++.+++. .++.+.+||||
T Consensus 77 ------~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (286)
T PRK13646 77 ------DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGG 149 (286)
T ss_pred ------cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 000012345667765543 1222 2333 333321 12222 3456788888985 25679999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+|||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||+||||++++..+|||+++|++|++++.|+
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999976668999999999999999999999999999999999
Q ss_pred hhHHHHh
Q 018938 258 MDKVKEA 264 (348)
Q Consensus 258 ~~~~~~~ 264 (348)
++++...
T Consensus 230 ~~~~~~~ 236 (286)
T PRK13646 230 PKELFKD 236 (286)
T ss_pred HHHHHhC
Confidence 9887653
No 81
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=8.7e-47 Score=362.94 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=173.1
Q ss_pred CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129 (348)
Q Consensus 50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (348)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ......++.++|+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~-------~~~~~rr~~i~~v 76 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV-------ELREVRRKKIGMV 76 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHH-------HHHHHHhCcEEEE
Confidence 356799999999999999999999999999999999999999999999999875321110 0000013467777
Q ss_pred CCCccccccchHHHH-Hhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeecc
Q 018938 130 GFEVPIQMDVSAEKM-IFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 200 (348)
Q Consensus 130 ~~~~~~~~~~~~~~~-~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEP 200 (348)
+++..++..+++.++ .+.. .++.. +++.++++.+++. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 77 ~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 77 FQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred ECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 776666666565543 3321 22222 3466788888986 4778999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhh
Q 018938 201 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 201 tsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 266 (348)
|++||+.++..+.+.|.++.++.|+|||+||||++++..+||+|++|++|+++..|+++++...+.
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~ 222 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPA 222 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcc
Confidence 999999999999999999977679999999999999999999999999999999999999876543
No 82
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.5e-46 Score=341.95 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=170.5
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~- 70 (232)
T cd03218 1 LRAENLSKRYG---------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH- 70 (232)
T ss_pred CeEEEEEEEeC---------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHh-
Confidence 47899999994 35799999999999999999999999999999999999999999999999764221100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
...+..++|.++....+...+..+.+ +.. .... ..++.++++.+++. .++.+.+||||||||
T Consensus 71 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 141 (232)
T cd03218 71 ---------KRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRR 141 (232)
T ss_pred ---------HHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence 00122355555544444444443322 211 1111 12456788888886 367789999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
|+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|+++..++.+++
T Consensus 142 l~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999999999999875 589999999999999999999999999999999988776
Q ss_pred HH
Q 018938 262 KE 263 (348)
Q Consensus 262 ~~ 263 (348)
..
T Consensus 221 ~~ 222 (232)
T cd03218 221 AA 222 (232)
T ss_pred hc
Confidence 53
No 83
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.1e-46 Score=340.57 Aligned_cols=213 Identities=22% Similarity=0.309 Sum_probs=170.7
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~- 70 (230)
T TIGR03410 1 LEVSNLNVYYG---------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH- 70 (230)
T ss_pred CEEEeEEEEeC---------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH-
Confidence 47899999994 35799999999999999999999999999999999999999999999999764321100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC-HHHHHHHHHHcC-CC--cCccCCCCCHHHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID-PQRRAELIKVLD-ID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~l~~l~-l~--~~~~~~~LSgGqrQRv~ 183 (348)
...++.++|.++....+...+..+.+ +.. .... .+...++++.++ +. .++++.+||||||||++
T Consensus 71 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~ 141 (230)
T TIGR03410 71 ---------ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLA 141 (230)
T ss_pred ---------HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHH
Confidence 01123456665554444444444332 221 1111 233456677665 33 46789999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 262 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 262 (348)
|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||+++++..+||++++|++|++++.++.+++.
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999999999999987655899999999999999999999999999999999988763
No 84
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.9e-46 Score=343.00 Aligned_cols=222 Identities=21% Similarity=0.292 Sum_probs=174.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+......
T Consensus 3 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFH---------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEEC---------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccc
Confidence 699999999994 35799999999999999999999999999999999999999999999999865321000
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
.. .. .....++..++|+++....+...+..+.+ +. ..... .+++.++++.+++. .++++.+||||||
T Consensus 74 ~~-~~--~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~ 150 (250)
T PRK11264 74 SQ-QK--GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ 150 (250)
T ss_pred cc-hh--hHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence 00 00 00012234566665554444333443322 21 11112 13456778888886 3678899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||++|||++++..+||++++|++|++++.++++
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 4899999999999999999999999999999999998
Q ss_pred HHHHh
Q 018938 260 KVKEA 264 (348)
Q Consensus 260 ~~~~~ 264 (348)
++...
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 87654
No 85
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-46 Score=342.87 Aligned_cols=235 Identities=19% Similarity=0.276 Sum_probs=192.7
Q ss_pred CeEEEeceEEEecCCC---------CC------CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC
Q 018938 29 PTVEINALKFTYPGID---------GH------PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP 93 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~---------~~------~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~ 93 (348)
..|+++||+|-|+... |. ...|-...++|+||+|++||++.|+|-||||||||+|+|++++.|+.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3589999999996421 10 01233456899999999999999999999999999999999999999
Q ss_pred ceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC
Q 018938 94 EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID 166 (348)
Q Consensus 94 G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~ 166 (348)
|+|.++|.++..-.. .. +....++.+++++|++.+.+..++.+ ..|++ .+.+. +++.++++.+|+.
T Consensus 83 G~ilv~g~di~~~~~----~~---Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~ 155 (386)
T COG4175 83 GEILVDGKDIAKLSA----AE---LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155 (386)
T ss_pred ceEEECCcchhcCCH----HH---HHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence 999999987543211 01 11123456788877777777666544 44554 24332 3456788888986
Q ss_pred --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
.+++|++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++.++||||||||++++.++.|||
T Consensus 156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rI 235 (386)
T COG4175 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRI 235 (386)
T ss_pred hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceE
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCEEeeecChhHHHHhhhhhhH
Q 018938 245 VYVAHGKLQLAMPMDKVKEASKLSLM 270 (348)
Q Consensus 245 ~~l~~G~i~~~g~~~~~~~~~~~~~~ 270 (348)
.+|++|+|+..|+|+++..++...+.
T Consensus 236 aimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred EEecCCeEEEeCCHHHHHcCccHHHH
Confidence 99999999999999999987765543
No 86
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-46 Score=329.48 Aligned_cols=218 Identities=20% Similarity=0.250 Sum_probs=183.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+..|+ ..++|++|||++++||+++|+|+||||||||||+|+|+.++.+|+|.++|+++.....
T Consensus 2 ~mL~v~~l~~~YG---------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 2 PMLEVENLSAGYG---------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred CceeEEeEeeccc---------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCH
Confidence 5799999999994 5789999999999999999999999999999999999999999999999998754322
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-ccCCC----CHH-HHHHHHHHcC-CC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVAGI----DPQ-RRAELIKVLD-ID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~-~~~~~l~~l~-l~--~~~~~~~LSgGqr 179 (348)
. ...+..++|+++....+..+++++++. +.... ... ..+++.+.|- +. .+++.++||||||
T Consensus 73 ~----------~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQ 142 (237)
T COG0410 73 H----------ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQ 142 (237)
T ss_pred H----------HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHH
Confidence 1 123455777877777778888877653 22111 111 1445565553 22 4677899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|.++|||||+.+|++|+|||||.||-|.-.++|++.|+++.++.|.||++|.++..++.+++||.++|.+|+|+..|+.+
T Consensus 143 QMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 143 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999998777899999999999999999999999999999999999
Q ss_pred HHHHhh
Q 018938 260 KVKEAS 265 (348)
Q Consensus 260 ~~~~~~ 265 (348)
++...+
T Consensus 223 eL~~~~ 228 (237)
T COG0410 223 ELLADP 228 (237)
T ss_pred HHhcCH
Confidence 987654
No 87
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.7e-46 Score=342.48 Aligned_cols=213 Identities=18% Similarity=0.262 Sum_probs=171.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 2 ~i~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~- 71 (242)
T TIGR03411 2 ILYLEGLSVSFD---------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE- 71 (242)
T ss_pred eEEEEeeEEEcC---------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCH-
Confidence 689999999995 3579999999999999999999999999999999999999999999999975421100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----------CC----CHHHHHHHHHHcCCC--cCccCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----------GI----DPQRRAELIKVLDID--LSWRMH 172 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~----~~~~~~~~l~~l~l~--~~~~~~ 172 (348)
....+..++|.++....+...+..+++ +... .. ...++.++++.+++. .++.+.
T Consensus 72 ---------~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (242)
T TIGR03411 72 ---------HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG 142 (242)
T ss_pred ---------HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 001122355555554444444444322 1110 00 123456788888886 367889
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
+|||||+|||+|||||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++||+++++..+||++++|++|++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSV 220 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999854 68999999999999999999999999999
Q ss_pred eeecChhHHHH
Q 018938 253 QLAMPMDKVKE 263 (348)
Q Consensus 253 ~~~g~~~~~~~ 263 (348)
++.++++++..
T Consensus 221 ~~~~~~~~~~~ 231 (242)
T TIGR03411 221 LAEGSLDQVQA 231 (242)
T ss_pred EeeCCHHHHhc
Confidence 99999887754
No 88
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-46 Score=347.65 Aligned_cols=216 Identities=25% Similarity=0.367 Sum_probs=174.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+++|++ ...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|..+....
T Consensus 2 ~~l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~- 72 (277)
T PRK13652 2 HLIETRDLCYSYSG--------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN- 72 (277)
T ss_pred ceEEEEEEEEEeCC--------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-
Confidence 36999999999952 346999999999999999999999999999999999999999999999998642210
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
...++..++++++... .....++.+.+ +.. ...+. +++.++++.+++. .++.+.+|||||
T Consensus 73 ----------~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq 142 (277)
T PRK13652 73 ----------IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGE 142 (277)
T ss_pred ----------HHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHH
Confidence 0122344555544431 11123333322 211 12222 2456788888885 467899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
|||++|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+|||+++|++|++++.|++
T Consensus 143 ~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~ 222 (277)
T PRK13652 143 KKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCH
Confidence 99999999999999999999999999999999999999999766689999999999999999999999999999999999
Q ss_pred hHHHH
Q 018938 259 DKVKE 263 (348)
Q Consensus 259 ~~~~~ 263 (348)
+++.+
T Consensus 223 ~~~~~ 227 (277)
T PRK13652 223 EEIFL 227 (277)
T ss_pred HHHhc
Confidence 88864
No 89
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-46 Score=341.22 Aligned_cols=215 Identities=20% Similarity=0.306 Sum_probs=168.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|++.. ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.....
T Consensus 4 ~~l~~~~l~~~~~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS-----VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred ceEEEEeEEEEcCCCC-----cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCH
Confidence 5799999999995310 01469999999999999999999999999999999999999999999999986532110
Q ss_pred ccccCcccccchhh-hhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEW-RREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
. .. ..+ ++.++|+++...++...+..+.+ +. ..... .+++.++++.+++. .++.+.+|||||
T Consensus 79 ~----~~----~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 150 (233)
T PRK11629 79 A----AK----AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGE 150 (233)
T ss_pred H----HH----HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 0 00 001 13456665554444444444332 21 11212 23456788889985 366789999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+ |++++|++|++++.++
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998765689999999999999875 6999999999988765
No 90
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.3e-46 Score=339.74 Aligned_cols=210 Identities=27% Similarity=0.404 Sum_probs=169.6
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||++.|++ +.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~-------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---- 69 (220)
T cd03263 1 LQIRNLTKTYKK-------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD---- 69 (220)
T ss_pred CEEEeeEEEeCC-------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc----
Confidence 478999999952 126799999999999999999999999999999999999999999999999764211
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
...+++.++|++++...+...+..+.+ +. ..... .+++.++++.+++. .++++.+||||||||
T Consensus 70 --------~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 141 (220)
T cd03263 70 --------RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRK 141 (220)
T ss_pred --------hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHH
Confidence 012334566665554444344444332 11 11222 13456788888885 367789999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
|+|||||+.+|++|||||||++||+.++..+.++|+++++ +.|||++|||++++..+||++++|++|++++.++++++
T Consensus 142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999999864 58999999999999999999999999999998887653
No 91
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.3e-46 Score=346.92 Aligned_cols=226 Identities=17% Similarity=0.290 Sum_probs=174.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+...+....+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 57999999999952100000013579999999999999999999999999999999999999999999999976531110
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-hc--c-CCCC----HHHHHHHHHHcCCC---cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-FG--V-AGID----PQRRAELIKVLDID---LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~--~-~~~~----~~~~~~~l~~l~l~---~~~~~~~LS 175 (348)
...++.++|++++.. +....+..+.+ +. . .... .+.+.++++.+++. .+.++.+||
T Consensus 83 -----------~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 151 (267)
T PRK15112 83 -----------SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLA 151 (267)
T ss_pred -----------hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcC
Confidence 011223455544322 12222332221 11 1 1111 13456788889984 256789999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+.+|++|||||||++||+.++..+.++|.++.++.|.|||++||+++++..+||++++|++|+++..
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999998766689999999999999999999999999999999
Q ss_pred cChhHHHHhh
Q 018938 256 MPMDKVKEAS 265 (348)
Q Consensus 256 g~~~~~~~~~ 265 (348)
++++++.+.+
T Consensus 232 ~~~~~~~~~~ 241 (267)
T PRK15112 232 GSTADVLASP 241 (267)
T ss_pred CCHHHHhcCC
Confidence 9988887543
No 92
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.5e-46 Score=340.93 Aligned_cols=209 Identities=24% Similarity=0.329 Sum_probs=167.1
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----cCCCceEEEcCeeccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH-----MVEPEMVKVLGRSAFH 105 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~-----~~~~G~i~i~G~~~~~ 105 (348)
|+++||+++|+ .+++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYG---------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcC---------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhh
Confidence 47899999994 357999999999999999999999999999999999999 8999999999976422
Q ss_pred cccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC-C----HHHHHHHHHHcCCCc--Ccc--CCC
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-D----PQRRAELIKVLDIDL--SWR--MHK 173 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~----~~~~~~~l~~l~l~~--~~~--~~~ 173 (348)
... . ...+++.++|+++....+ ..+..+.+ +.. ... . .+++.++++.+++.. ++. +.+
T Consensus 72 ~~~-----~----~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 141 (227)
T cd03260 72 LDV-----D----VLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALG 141 (227)
T ss_pred cch-----H----HHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCccc
Confidence 100 0 012334566665554443 44444332 211 111 1 234567888888862 444 599
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ .|||++|||++++..+||++++|++|+++
T Consensus 142 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999998653 89999999999999999999999999999
Q ss_pred eecChhH
Q 018938 254 LAMPMDK 260 (348)
Q Consensus 254 ~~g~~~~ 260 (348)
+.|++++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9887654
No 93
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-46 Score=343.96 Aligned_cols=223 Identities=20% Similarity=0.247 Sum_probs=175.0
Q ss_pred cCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEE
Q 018938 24 MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKV 98 (348)
Q Consensus 24 m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i 98 (348)
|+...++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+
T Consensus 1 ~~~~~~~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 71 (254)
T PRK14273 1 MPKNEAIIETENLNLFYT---------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY 71 (254)
T ss_pred CCCCCceEEEeeeEEEeC---------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE
Confidence 344556899999999994 35799999999999999999999999999999999999986 4899999
Q ss_pred cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CC-CC----HHHHHHHHHHcCCC----
Q 018938 99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AG-ID----PQRRAELIKVLDID---- 166 (348)
Q Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~---- 166 (348)
+|.++..... ....+++.++|++++...+. .++.+ +.+.. .. .. .+.+.++++.+++.
T Consensus 72 ~g~~i~~~~~---------~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 141 (254)
T PRK14273 72 EGKNIYSNNF---------DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK 141 (254)
T ss_pred CCEecccccc---------cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH
Confidence 9976421100 00123345666655543332 34443 22221 11 11 13345667777762
Q ss_pred --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++|||++++..+||++
T Consensus 142 ~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i 219 (254)
T PRK14273 142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRT 219 (254)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEE
Confidence 366789999999999999999999999999999999999999999999999985 3 689999999999999999999
Q ss_pred EEEcCCEEeeecChhHHHHhhhh
Q 018938 245 VYVAHGKLQLAMPMDKVKEASKL 267 (348)
Q Consensus 245 ~~l~~G~i~~~g~~~~~~~~~~~ 267 (348)
++|++|+++..|+++++...+.+
T Consensus 220 ~~l~~G~i~~~g~~~~~~~~~~~ 242 (254)
T PRK14273 220 AFFLNGCIEEESSTDELFFNPKN 242 (254)
T ss_pred EEEECCEEEEeCCHHHHHhCCCC
Confidence 99999999999999988765443
No 94
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=341.87 Aligned_cols=215 Identities=20% Similarity=0.260 Sum_probs=171.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 4 ~~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 4 VMLSFDKVSAHYG---------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT 74 (237)
T ss_pred cEEEEEeEEEeeC---------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH
Confidence 4799999999994 3679999999999999999999999999999999999999999999999976422110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC--HHHHHHHHHHc-CCC--cCccCCCCCHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID--PQRRAELIKVL-DID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~--~~~~~~~l~~l-~l~--~~~~~~~LSgGqrQ 180 (348)
....++.++|+++....+...+..+.+ +.. .... ...+.++++.+ ++. .+.++.+|||||||
T Consensus 75 ----------~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~q 144 (237)
T PRK11614 75 ----------AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQ 144 (237)
T ss_pred ----------HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHH
Confidence 001233455665544444334444332 211 1111 12344556666 343 35678999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
|++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999865 48999999999999999999999999999999999988
Q ss_pred HHH
Q 018938 261 VKE 263 (348)
Q Consensus 261 ~~~ 263 (348)
+..
T Consensus 224 ~~~ 226 (237)
T PRK11614 224 LLA 226 (237)
T ss_pred Hhc
Confidence 764
No 95
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-46 Score=352.73 Aligned_cols=230 Identities=21% Similarity=0.328 Sum_probs=176.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc--
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT-- 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~-- 107 (348)
+|+++||+++|++.. +...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+.....
T Consensus 2 ~i~~~~l~~~y~~~~----~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIFNKKL----PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEECCCC----CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccc
Confidence 489999999995310 01136999999999999999999999999999999999999999999999986431100
Q ss_pred ----------cccccCccc-ccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--
Q 018938 108 ----------ALTSSGDLS-YLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID-- 166 (348)
Q Consensus 108 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~-- 166 (348)
......... .....+++.++|++++.. .....++.+ +.++. .+... .++.++++.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh
Confidence 000000000 001124456777766431 112234443 33332 12222 3467788999985
Q ss_pred -cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938 167 -LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 245 (348)
Q Consensus 167 -~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~ 245 (348)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||||+
T Consensus 158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEE
Confidence 3678999999999999999999999999999999999999999999999999874 59999999999999999999999
Q ss_pred EEcCCEEeeecChhHHHHh
Q 018938 246 YVAHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 246 ~l~~G~i~~~g~~~~~~~~ 264 (348)
+|++|++++.|+++++...
T Consensus 237 vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEECCEEEEECCHHHHhcC
Confidence 9999999999999988654
No 96
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-46 Score=341.10 Aligned_cols=214 Identities=22% Similarity=0.276 Sum_probs=173.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 3 ~l~~~~l~~~~~---------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~- 72 (241)
T PRK10895 3 TLTAKNLAKAYK---------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL- 72 (241)
T ss_pred eEEEeCcEEEeC---------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH-
Confidence 699999999994 3579999999999999999999999999999999999999999999999976422110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--C-CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--A-GID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
....+..++|+++....+...+..+.+ +.. . ..+ ...+.++++.+++. .++++.+|||||+
T Consensus 73 ---------~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (241)
T PRK10895 73 ---------HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGER 143 (241)
T ss_pred ---------HHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHH
Confidence 001233456665554444444444332 211 1 111 13456778888875 3677899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++||+++++..+||++++|++|++++.++++
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 222 (241)
T PRK10895 144 RRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPT 222 (241)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHH
Confidence 999999999999999999999999999999999999999864 5899999999999999999999999999999999988
Q ss_pred HHHH
Q 018938 260 KVKE 263 (348)
Q Consensus 260 ~~~~ 263 (348)
++..
T Consensus 223 ~~~~ 226 (241)
T PRK10895 223 EILQ 226 (241)
T ss_pred HHhc
Confidence 7754
No 97
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-46 Score=353.93 Aligned_cols=231 Identities=18% Similarity=0.244 Sum_probs=177.6
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+++|++.. ....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus 19 ~~~l~~~nl~~~y~~~~----~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQ----ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCC----cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccc
Confidence 46899999999995310 01246999999999999999999999999999999999999999999999997653210
Q ss_pred c---c-ccc-CcccccchhhhhhhhhcCCCc--cccccchHH-HHHhcc--CCCCH----HHHHHHHHHcCCC---cCcc
Q 018938 108 A---L-TSS-GDLSYLGGEWRREVAFAGFEV--PIQMDVSAE-KMIFGV--AGIDP----QRRAELIKVLDID---LSWR 170 (348)
Q Consensus 108 ~---~-~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~ 170 (348)
. . ... .........+++.++|++++. .+... +.. ++.++. .+.+. .++.++++.+++. .++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 173 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS 173 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 0 0 000 000000112345677776543 22222 333 333322 12222 3456788888985 3678
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||+||||++++..+||++++|++|
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999864 5899999999999999999999999999
Q ss_pred EEeeecChhHHHHh
Q 018938 251 KLQLAMPMDKVKEA 264 (348)
Q Consensus 251 ~i~~~g~~~~~~~~ 264 (348)
++++.|++++++..
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999988653
No 98
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-46 Score=347.58 Aligned_cols=215 Identities=22% Similarity=0.303 Sum_probs=170.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 1 ml~~~~l~~~~~---------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~- 70 (271)
T PRK13638 1 MLATSDLWFRYQ---------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR- 70 (271)
T ss_pred CeEEEEEEEEcC---------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccC-
Confidence 489999999994 3579999999999999999999999999999999999999999999999986521100
Q ss_pred cccCcccccchhhhhhhhhcCCCccc-cccchHH-HHHhc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPI-QMDVSAE-KMIFG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
. ...+++.++|+++.... ....+.. ++.+. ..+... .++.++++.+++. .++++.+||||||
T Consensus 71 ----~----~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 142 (271)
T PRK13638 71 ----G----LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQK 142 (271)
T ss_pred ----C----HHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHH
Confidence 0 01223445665544321 1112222 22221 112222 2345678888875 3677899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|++++.|+++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 4899999999999999999999999999999999988
Q ss_pred HHHH
Q 018938 260 KVKE 263 (348)
Q Consensus 260 ~~~~ 263 (348)
++..
T Consensus 222 ~~~~ 225 (271)
T PRK13638 222 EVFA 225 (271)
T ss_pred HHhc
Confidence 8754
No 99
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.7e-46 Score=337.51 Aligned_cols=205 Identities=23% Similarity=0.370 Sum_probs=162.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 ~l~~~~l~~~~~~--------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 1 MIEFHNVSKAYPG--------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred CEEEEeeeEEeCC--------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH
Confidence 4889999999941 35799999999999999999999999999999999999999999999999865321100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
. ...+++.++|+++....+...+..+.+ +. ..+.. .+++.++++.+++. .++.+.+|||||||
T Consensus 73 ----~----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (214)
T TIGR02673 73 ----Q----LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQ 144 (214)
T ss_pred ----H----HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 0 011234456665554444334443322 21 11111 23456788888885 35678999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|+
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999999865 48999999999999999999999999985
No 100
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-46 Score=346.70 Aligned_cols=216 Identities=24% Similarity=0.410 Sum_probs=173.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||++.|+. ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 4 ~~l~~~~l~~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPD-------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeCC-------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH
Confidence 57999999999952 23569999999999999999999999999999999999999999999999986532110
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
...++.++|++++.. .....+..+ +.+.. .+... +++.++++.+++. .++++.+|||||
T Consensus 77 -----------~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~ 145 (279)
T PRK13635 77 -----------WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQ 145 (279)
T ss_pred -----------HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHH
Confidence 112334566655431 222233333 32221 11221 3456788888886 467899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++. .||++++|++|++++.|++
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~ 224 (279)
T PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTP 224 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999997666899999999999997 5999999999999999998
Q ss_pred hHHHH
Q 018938 259 DKVKE 263 (348)
Q Consensus 259 ~~~~~ 263 (348)
+++..
T Consensus 225 ~~~~~ 229 (279)
T PRK13635 225 EEIFK 229 (279)
T ss_pred HHHhc
Confidence 88764
No 101
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.9e-46 Score=343.50 Aligned_cols=224 Identities=20% Similarity=0.333 Sum_probs=175.2
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc--c
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT--A 108 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~--~ 108 (348)
|+++||+++|+ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... .
T Consensus 1 i~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFG---------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeC---------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 47899999994 357999999999999999999999999999999999999999999999998653210 0
Q ss_pred --ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCC----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938 109 --LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGID----PQRRAELIKVLDID--LSWRMHKVSD 176 (348)
Q Consensus 109 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSg 176 (348)
...... .....+++.++|+++...++...+..+.+ +.. .... ...+.++++.+++. .++.+.+|||
T Consensus 72 ~~~~~~~~--~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 149 (252)
T TIGR03005 72 GPLVPADE--KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSG 149 (252)
T ss_pred ccccccch--hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCH
Confidence 000000 00012334566665554444444444332 211 1112 13456778888885 3667899999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||+||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T TIGR03005 150 GQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG 229 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999987666899999999999999999999999999999999
Q ss_pred ChhHHHHhh
Q 018938 257 PMDKVKEAS 265 (348)
Q Consensus 257 ~~~~~~~~~ 265 (348)
+.+++....
T Consensus 230 ~~~~~~~~~ 238 (252)
T TIGR03005 230 KPDEIFRQP 238 (252)
T ss_pred CHHHHhcCC
Confidence 988876543
No 102
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-46 Score=343.85 Aligned_cols=213 Identities=24% Similarity=0.376 Sum_probs=171.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++|++++|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 2 ~l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~- 71 (255)
T PRK11231 2 TLRTENLTVGYG---------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS- 71 (255)
T ss_pred EEEEEeEEEEEC---------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH-
Confidence 589999999994 3679999999999999999999999999999999999999999999999975421100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc------CCC----CHHHHHHHHHHcCCC--cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV------AGI----DPQRRAELIKVLDID--LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~----~~~~~~~~l~~l~l~--~~~~~~~LSg 176 (348)
..+++.++|++++......++..+.+ ++. ... ...++.++++.+++. .++++.+|||
T Consensus 72 ----------~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 141 (255)
T PRK11231 72 ----------RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSG 141 (255)
T ss_pred ----------HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCH
Confidence 11223455555443333333443322 211 010 123456778888885 3678999999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|+++..+
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~ 220 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEc
Confidence 999999999999999999999999999999999999999999865 4899999999999999999999999999999999
Q ss_pred ChhHHHH
Q 018938 257 PMDKVKE 263 (348)
Q Consensus 257 ~~~~~~~ 263 (348)
+++++..
T Consensus 221 ~~~~~~~ 227 (255)
T PRK11231 221 TPEEVMT 227 (255)
T ss_pred CHHHhcC
Confidence 8887654
No 103
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-46 Score=341.21 Aligned_cols=218 Identities=22% Similarity=0.286 Sum_probs=172.0
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR 101 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~ 101 (348)
..|+|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|++. |++|+|.++|+
T Consensus 3 ~~~~l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14242 3 SPPKMEARGLSFFYG---------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGE 73 (253)
T ss_pred CCcEEEEeeeEEEEC---------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCE
Confidence 457899999999994 3579999999999999999999999999999999999864 57899999997
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCC-C----HHHHHHHHHHcCCC------c
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGI-D----PQRRAELIKVLDID------L 167 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~ 167 (348)
++.... . ....+++.++|+++....+.. +.. ++.+.. .+. . .+++.++++.+++. .
T Consensus 74 ~i~~~~-~--------~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (253)
T PRK14242 74 NIYDPH-V--------DVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL 143 (253)
T ss_pred Eccccc-c--------CHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh
Confidence 642110 0 001223456666554433332 333 332221 111 1 23455677777763 2
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+||++++|
T Consensus 144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEE
Confidence 56789999999999999999999999999999999999999999999999984 3 789999999999999999999999
Q ss_pred cCCEEeeecChhHHHHhh
Q 018938 248 AHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~~~~ 265 (348)
++|++++.|+++++....
T Consensus 222 ~~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14242 222 YMGKLIEVGPTEQIFTRP 239 (253)
T ss_pred ECCEEEEeCCHHHHHcCC
Confidence 999999999988876543
No 104
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-46 Score=357.83 Aligned_cols=218 Identities=23% Similarity=0.359 Sum_probs=178.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||++ ||+|+|+ ++ .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 1 ~l~~-~l~k~~~---------~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~- 67 (352)
T PRK11144 1 MLEL-NFKQQLG---------DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEK- 67 (352)
T ss_pred CeEE-EEEEEeC---------CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc-
Confidence 4788 9999994 23 23 8999999999999999999999999999999999999999999986532100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICM 186 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAr 186 (348)
.. .....++.++|++++..++..++..+.+ ++......+++.++++.+++. .++++.+|||||||||+|||
T Consensus 68 ----~~--~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar 141 (352)
T PRK11144 68 ----GI--CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR 141 (352)
T ss_pred ----cc--ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence 00 0011234566766665555555555443 333222345677889999986 47789999999999999999
Q ss_pred HHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhh
Q 018938 187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 187 aL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 266 (348)
||+.+|++|||||||++||+.++..+++.|+++.++.|.|||+||||++++..+||++++|++|+++..|+++++...+.
T Consensus 142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 142 ALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999999999987668999999999999999999999999999999999999987654
No 105
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-46 Score=345.10 Aligned_cols=219 Identities=23% Similarity=0.325 Sum_probs=173.5
Q ss_pred CCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccc
Q 018938 26 NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH 105 (348)
Q Consensus 26 ~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~ 105 (348)
+..++|+++|++++|++ ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 ~~~~~l~i~~l~~~~~~-------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 3 DKNSIIVFKNVSFQYQS-------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITD 75 (269)
T ss_pred CCCceEEEEEEEEEcCC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 34568999999999953 12469999999999999999999999999999999999999999999999976421
Q ss_pred cccccccCcccccchhhhhhhhhcCCCcc-ccccch-HHHHHhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCC
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVS-AEKMIFGV--AGID----PQRRAELIKVLDID--LSWRMHKVS 175 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LS 175 (348)
.. ...+++.++|+++... .....+ .++..+.. .... .+++.++++.+++. .++++.+||
T Consensus 76 ~~-----------~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 144 (269)
T PRK13648 76 DN-----------FEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALS 144 (269)
T ss_pred CC-----------HHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCC
Confidence 10 0123344555544431 122222 23332221 1112 13456778888875 367889999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||+++++.. ||++++|++|++++.
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 145 GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876568999999999999985 999999999999999
Q ss_pred cChhHHHH
Q 018938 256 MPMDKVKE 263 (348)
Q Consensus 256 g~~~~~~~ 263 (348)
|+++++..
T Consensus 224 g~~~~~~~ 231 (269)
T PRK13648 224 GTPTEIFD 231 (269)
T ss_pred cCHHHHhc
Confidence 99888754
No 106
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=9.5e-46 Score=339.96 Aligned_cols=214 Identities=22% Similarity=0.279 Sum_probs=171.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-----CceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-----PEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-----~G~i~i~G~~~~ 104 (348)
+|+++||+++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 1 AIEIENLNLFYG---------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred CEEEEEEEEEEC---------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcc
Confidence 478999999995 357999999999999999999999999999999999999988 999999998643
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCC-CC----HHHHHHHHHHcCCC------cCcc
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAG-ID----PQRRAELIKVLDID------LSWR 170 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-~~----~~~~~~~l~~l~l~------~~~~ 170 (348)
.... .....++.++|+++....+. .+..+ +.+. ..+ .. .+++.++++.+++. .+++
T Consensus 72 ~~~~---------~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 141 (247)
T TIGR00972 72 DKKI---------DVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDS 141 (247)
T ss_pred cccc---------chHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCC
Confidence 2100 00122345666655543333 34333 2221 111 11 13456778888885 2567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++|||++++..+||++++|++|
T Consensus 142 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G 219 (247)
T TIGR00972 142 ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDG 219 (247)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999864 489999999999999999999999999
Q ss_pred EEeeecChhHHHHh
Q 018938 251 KLQLAMPMDKVKEA 264 (348)
Q Consensus 251 ~i~~~g~~~~~~~~ 264 (348)
+++..++++++...
T Consensus 220 ~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 220 ELVEYGPTEQIFTN 233 (247)
T ss_pred EEEEeCCHHHHHhC
Confidence 99999998887654
No 107
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=341.91 Aligned_cols=223 Identities=17% Similarity=0.211 Sum_probs=175.4
Q ss_pred hhcCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceE
Q 018938 22 AVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMV 96 (348)
Q Consensus 22 ~~m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i 96 (348)
..|.....+|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|
T Consensus 5 ~~~~~~~~~l~~~~l~~~~~---------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 5 SMVATAPSKIQVRNLNFYYG---------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred hHhcCCCceEEEEEEEEEeC---------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 33445567899999999994 3579999999999999999999999999999999999986 478999
Q ss_pred EEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc---CCCCH----HHHHHHHHHcCCC--
Q 018938 97 KVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV---AGIDP----QRRAELIKVLDID-- 166 (348)
Q Consensus 97 ~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~----~~~~~~l~~l~l~-- 166 (348)
.++|.++.... . ....+++.++|++++..++. .+..+. .+.. ...+. +++.++++.+++.
T Consensus 76 ~~~g~~~~~~~-~--------~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 145 (260)
T PRK10744 76 LLDGENILTPK-Q--------DIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE 145 (260)
T ss_pred EECCEEccccc-c--------chHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh
Confidence 99997652110 0 00123345666655433333 333332 2211 11221 3456778888863
Q ss_pred ----cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938 167 ----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 242 (348)
Q Consensus 167 ----~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 242 (348)
.++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||+++++..+||
T Consensus 146 ~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d 223 (260)
T PRK10744 146 VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSD 223 (260)
T ss_pred hHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCC
Confidence 356789999999999999999999999999999999999999999999999985 3 6899999999999999999
Q ss_pred EEEEEcCCEEeeecChhHHHHhh
Q 018938 243 HIVYVAHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 243 ~v~~l~~G~i~~~g~~~~~~~~~ 265 (348)
++++|++|++++.++++++....
T Consensus 224 ~i~~l~~G~i~~~g~~~~~~~~~ 246 (260)
T PRK10744 224 YTAFMYLGELIEFGNTDTIFTKP 246 (260)
T ss_pred EEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999998886543
No 108
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-46 Score=343.69 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=165.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 ml~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--- 68 (255)
T PRK11248 1 MLQISHLYADYG---------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP--- 68 (255)
T ss_pred CEEEEEEEEEeC---------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---
Confidence 488999999994 35799999999999999999999999999999999999999999999999764210
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.. .++|+++....+...+..+.+ +.. .+.. ..++.++++.+++. .++++.+|||||||
T Consensus 69 --~~-----------~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q 135 (255)
T PRK11248 69 --GA-----------ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQ 135 (255)
T ss_pred --CC-----------cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHH
Confidence 01 123333333333333333322 211 1222 23456788888885 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc--CCEEeeecCh
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA--HGKLQLAMPM 258 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~--~G~i~~~g~~ 258 (348)
||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+||++++|+ +|+++..++.
T Consensus 136 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999999999999999866568999999999999999999999998 5999988754
Q ss_pred h
Q 018938 259 D 259 (348)
Q Consensus 259 ~ 259 (348)
+
T Consensus 216 ~ 216 (255)
T PRK11248 216 N 216 (255)
T ss_pred C
Confidence 3
No 109
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-47 Score=327.81 Aligned_cols=218 Identities=23% Similarity=0.302 Sum_probs=186.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|.++||.|+|+ +++++++|||+|++||++||+|||||||||.+.+++|+.+|++|.|.++|.++...+-
T Consensus 3 ~~L~a~~l~K~y~---------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 3 STLVAENLAKSYK---------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM 73 (243)
T ss_pred cEEEehhhhHhhC---------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCCh
Confidence 4699999999994 5789999999999999999999999999999999999999999999999987643221
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc---CCCC------HHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV---AGID------PQRRAELIKVLDID--LSWRMHKVSDG 177 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~l~~l~l~--~~~~~~~LSgG 177 (348)
....+..++|.+|+...+..+++++++... ...+ ..+.+++++.|.+. .+.+..+||||
T Consensus 74 ----------~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGG 143 (243)
T COG1137 74 ----------HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGG 143 (243)
T ss_pred ----------HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccc
Confidence 111234578888888888888887755321 1111 12345788888886 36678899999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
||+|+.|||||+.+|+++||||||+|+||.+..++.++++.+. +.|..|+++-|+..+...+|||.+++++|++.+.|+
T Consensus 144 ERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 144 ERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEccccHHHHHhhhheEEEEecCeEEecCC
Confidence 9999999999999999999999999999999999999999986 569999999999999999999999999999999999
Q ss_pred hhHHHHhhh
Q 018938 258 MDKVKEASK 266 (348)
Q Consensus 258 ~~~~~~~~~ 266 (348)
++++.+++.
T Consensus 223 p~ei~~n~~ 231 (243)
T COG1137 223 PEEIVNNED 231 (243)
T ss_pred HHHHhcChh
Confidence 999987654
No 110
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-46 Score=348.07 Aligned_cols=222 Identities=20% Similarity=0.319 Sum_probs=172.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|++.. ...+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus 2 ~i~~~~l~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGT----PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCC----CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence 589999999995200 0014699999999999999999999999999999999999999999999999865321000
Q ss_pred cccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID---LSWRMHKVSDGQ 178 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGq 178 (348)
. .....+..++|++++.. .....++.+.+ +.. .... ..++.++++.+++. .++++.+|||||
T Consensus 78 ---~----~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq 150 (287)
T PRK13641 78 ---K----NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQ 150 (287)
T ss_pred ---c----hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHH
Confidence 0 00112334555544421 11123443332 211 1222 23456788889985 367899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|+++..|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999864 589999999999999999999999999999999998
Q ss_pred hHHHH
Q 018938 259 DKVKE 263 (348)
Q Consensus 259 ~~~~~ 263 (348)
+++..
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 88764
No 111
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5e-46 Score=345.30 Aligned_cols=226 Identities=20% Similarity=0.346 Sum_probs=175.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+........+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 68999999999521000000135799999999999999999999999999999999999999999999999764321100
Q ss_pred cccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC---cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID---LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~---~~~~~~~LSg 176 (348)
. ...+++.++|++++. .+....+..+.+ +. ..... .+++.++++.+++. .++++.+|||
T Consensus 82 ----~----~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 153 (265)
T TIGR02769 82 ----Q----RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSG 153 (265)
T ss_pred ----H----HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCH
Confidence 0 001233456665543 122233443322 11 11111 23456788889884 3678899999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|++|||||||++||+.++..++++|+++.++.|.|||++|||++++..+||++++|++|+++..|
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence 99999999999999999999999999999999999999999987666899999999999999999999999999999999
Q ss_pred ChhHHHH
Q 018938 257 PMDKVKE 263 (348)
Q Consensus 257 ~~~~~~~ 263 (348)
+++++..
T Consensus 234 ~~~~~~~ 240 (265)
T TIGR02769 234 DVAQLLS 240 (265)
T ss_pred CHHHHcC
Confidence 9988865
No 112
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-47 Score=324.87 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=189.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+|+|+ .+.+++++|++|++|.+++|||||||||||||.+++.+++.++|+|+++|..+...
T Consensus 1 MI~i~nv~K~y~---------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~--- 68 (252)
T COG4604 1 MITIENVSKSYG---------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTST--- 68 (252)
T ss_pred CeeehhhhHhhC---------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccC---
Confidence 589999999994 58899999999999999999999999999999999999999999999999875322
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----C-C---CHHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----G-I---DPQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-~---~~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
-.+++.+.++...|++.+...++++++. |+.. + . ++..+.++++.+++. .+++..+|||||
T Consensus 69 --------~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQ 140 (252)
T COG4604 69 --------PSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQ 140 (252)
T ss_pred --------ChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccch
Confidence 2234556666666777777778887764 3321 1 1 234567888888886 378899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
|||..||+.|+++.+.++||||.|+||..+...+++.|++++++.|+||++|-||++++..|+|+|+-|++|+++..|++
T Consensus 141 rQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred hhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhh
Q 018938 259 DKVKEASKL 267 (348)
Q Consensus 259 ~~~~~~~~~ 267 (348)
+++.+...+
T Consensus 221 ~eii~~~~L 229 (252)
T COG4604 221 DEIIQPEIL 229 (252)
T ss_pred HHhcCHHHH
Confidence 999875543
No 113
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-46 Score=347.93 Aligned_cols=218 Identities=21% Similarity=0.278 Sum_probs=173.5
Q ss_pred EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938 32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111 (348)
Q Consensus 32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~ 111 (348)
.++|+++.|+ .+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 26 ~~~~~~~~~~---------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~-- 94 (269)
T cd03294 26 SKEEILKKTG---------QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRK-- 94 (269)
T ss_pred hhhhhhhhcC---------CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChh--
Confidence 5779999994 46799999999999999999999999999999999999999999999999864321100
Q ss_pred cCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv 182 (348)
.+ ....+..++|+++....+...+..+.+ +. ..+.. .+++.++++.+++. .++.+.+|||||||||
T Consensus 95 --~~---~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv 169 (269)
T cd03294 95 --EL---RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRV 169 (269)
T ss_pred --hh---hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHH
Confidence 00 000112455655554444344444432 21 11121 23456788888885 4678999999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 262 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 262 (348)
+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+||++++|++|++++.|+++++.
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999987666899999999999999999999999999999999988886
Q ss_pred Hhh
Q 018938 263 EAS 265 (348)
Q Consensus 263 ~~~ 265 (348)
+..
T Consensus 250 ~~~ 252 (269)
T cd03294 250 TNP 252 (269)
T ss_pred hCc
Confidence 543
No 114
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=7.2e-46 Score=336.34 Aligned_cols=214 Identities=25% Similarity=0.341 Sum_probs=164.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|++.. ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 ~l~~~~v~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 1 LLEVKNLSVSFPTGG-----GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred CeEEEeeeEeccCCC-----cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchh
Confidence 478999999995200 012799999999999999999999999999999999999999999999999865321100
Q ss_pred cccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc--cCC--CCHH---H-HHHHHHHcCCC---cCccCCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG--VAG--IDPQ---R-RAELIKVLDID---LSWRMHKVS 175 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~--~~~--~~~~---~-~~~~l~~l~l~---~~~~~~~LS 175 (348)
....+++.++|.+++. .+....+..+.+ +. ... .... . ..++++.+++. .++++.+||
T Consensus 76 --------~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 147 (228)
T cd03257 76 --------LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELS 147 (228)
T ss_pred --------hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcC
Confidence 0011234456665543 122234443332 11 111 1111 1 13677888874 367889999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+||++++|++|+++..
T Consensus 148 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 99999999999999999999999999999999999999999999765589999999999999999999999999999765
Q ss_pred c
Q 018938 256 M 256 (348)
Q Consensus 256 g 256 (348)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 3
No 115
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.2e-46 Score=343.65 Aligned_cols=218 Identities=21% Similarity=0.307 Sum_probs=174.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC---ceEEEcCeeccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP---EMVKVLGRSAFH 105 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~---G~i~i~G~~~~~ 105 (348)
++|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|..+..
T Consensus 3 ~~l~~~nl~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 3 TIIRVEKLAKTFN---------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQR 73 (262)
T ss_pred cEEEEeeEEEEeC---------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccc
Confidence 5899999999994 3679999999999999999999999999999999999998864 999999976422
Q ss_pred cccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----------C-CC---HHHHHHHHHHcCCC--cC
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----------G-ID---PQRRAELIKVLDID--LS 168 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~-~~---~~~~~~~l~~l~l~--~~ 168 (348)
.... . .....+++.++|+++...++...+..+.+ +... . .. ..++.++++.+++. .+
T Consensus 74 ~~~~--~----~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 147 (262)
T PRK09984 74 EGRL--A----RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH 147 (262)
T ss_pred cccc--c----hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh
Confidence 1000 0 00012234466665554444444444332 2110 0 01 23456788888885 46
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+||++++|+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~ 227 (262)
T PRK09984 148 QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR 227 (262)
T ss_pred CCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 78999999999999999999999999999999999999999999999999976668999999999999999999999999
Q ss_pred CCEEeeecChhHH
Q 018938 249 HGKLQLAMPMDKV 261 (348)
Q Consensus 249 ~G~i~~~g~~~~~ 261 (348)
+|++++.|+++++
T Consensus 228 ~g~i~~~g~~~~~ 240 (262)
T PRK09984 228 QGHVFYDGSSQQF 240 (262)
T ss_pred CCEEEEeCCHHHh
Confidence 9999999998876
No 116
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=9e-46 Score=342.25 Aligned_cols=221 Identities=23% Similarity=0.296 Sum_probs=172.4
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee-----c
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS-----A 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~-----~ 103 (348)
++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 5 ~~l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 5 PLLSVRGLTKLYG---------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred ceEEEeeeEEEcC---------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcccccccc
Confidence 4799999999994 3579999999999999999999999999999999999999999999999975 2
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCcc--ccccchHH-HHHhc---cCCCC----HHHHHHHHHHcCCC---cCcc
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAE-KMIFG---VAGID----PQRRAELIKVLDID---LSWR 170 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~---~~~~~----~~~~~~~l~~l~l~---~~~~ 170 (348)
...... . .....+..++|++++.. +....+.. ++.+. ..... ...+.++++.+++. .++.
T Consensus 76 ~~~~~~----~---~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 76 YALSEA----E---RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred ccCCHH----H---HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 211000 0 00001223555544431 12222222 21111 11111 23456788888884 2577
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++.|.|||++|||++++..+||++++|++|
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g 228 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999987666899999999999999999999999999
Q ss_pred EEeeecChhHHHHhh
Q 018938 251 KLQLAMPMDKVKEAS 265 (348)
Q Consensus 251 ~i~~~g~~~~~~~~~ 265 (348)
++++.|+++++...+
T Consensus 229 ~i~~~~~~~~~~~~~ 243 (258)
T PRK11701 229 RVVESGLTDQVLDDP 243 (258)
T ss_pred EEEEeCCHHHHhcCC
Confidence 999999998876543
No 117
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-46 Score=334.26 Aligned_cols=200 Identities=22% Similarity=0.353 Sum_probs=162.5
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~---------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----- 66 (210)
T cd03269 1 LEVENVTKRFG---------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----- 66 (210)
T ss_pred CEEEEEEEEEC---------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-----
Confidence 47899999994 3579999999999999999999999999999999999999999999999975321
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
..++.++|.+++...+...+..+.+ +. ..+.. .+.+.++++.+++. .++++.+||||||||
T Consensus 67 ----------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 136 (210)
T cd03269 67 ----------AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQK 136 (210)
T ss_pred ----------HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHH
Confidence 1123445554444333333443322 11 11111 23456788888885 366789999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++|||++++..+||++++|++|++++.
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999865 489999999999999999999999999999764
No 118
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=339.72 Aligned_cols=213 Identities=22% Similarity=0.244 Sum_probs=171.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~ 104 (348)
+|+++||+++|+ +.++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSFG---------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEEC---------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence 699999999994 35799999999999999999999999999999999999874 6999999998653
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CC--CC----HHHHHHHHHHcCCC------cCc
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AG--ID----PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~--~~----~~~~~~~l~~l~l~------~~~ 169 (348)
... ...++..++|+++....+...+..+.+ +.. .. .. .+.+.++++.+++. .++
T Consensus 74 ~~~-----------~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (250)
T PRK14247 74 KMD-----------VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDA 142 (250)
T ss_pred cCC-----------HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcC
Confidence 211 012334566665554333344444332 211 11 11 13456778888873 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+||++++|++
T Consensus 143 ~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 789999999999999999999999999999999999999999999999984 3 78999999999999999999999999
Q ss_pred CEEeeecChhHHHHh
Q 018938 250 GKLQLAMPMDKVKEA 264 (348)
Q Consensus 250 G~i~~~g~~~~~~~~ 264 (348)
|++++.|+++++.+.
T Consensus 221 G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 221 GQIVEWGPTREVFTN 235 (250)
T ss_pred CeEEEECCHHHHHcC
Confidence 999999999887654
No 119
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1e-45 Score=341.65 Aligned_cols=223 Identities=23% Similarity=0.299 Sum_probs=176.4
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..+.....
T Consensus 4 ~~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 4 NKLNVIDLHKRYG---------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRD 74 (257)
T ss_pred ccEEEeeeEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccc
Confidence 4699999999994 3679999999999999999999999999999999999999999999999975421000
Q ss_pred ccccCcccc----cchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCCc---CccCCC
Q 018938 109 LTSSGDLSY----LGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDIDL---SWRMHK 173 (348)
Q Consensus 109 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~~---~~~~~~ 173 (348)
..+.+.. ....+++.++|++++..++...+..+.+ +. ..... ..++.++++.+++.. ++++.+
T Consensus 75 --~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 152 (257)
T PRK10619 75 --KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH 152 (257)
T ss_pred --cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 0000000 0012345677776655444444444332 21 11112 234567888898852 567899
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|+|||+||||++++..+|||+++|++|+++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 4999999999999999999999999999999
Q ss_pred eecChhHHHH
Q 018938 254 LAMPMDKVKE 263 (348)
Q Consensus 254 ~~g~~~~~~~ 263 (348)
+.|+++++..
T Consensus 232 ~~~~~~~~~~ 241 (257)
T PRK10619 232 EEGAPEQLFG 241 (257)
T ss_pred EeCCHHHhhh
Confidence 9999888754
No 120
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-46 Score=344.96 Aligned_cols=215 Identities=22% Similarity=0.312 Sum_probs=170.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 ml~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~- 71 (274)
T PRK13644 1 MIRLENVSYSYPD--------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK- 71 (274)
T ss_pred CEEEEEEEEEcCC--------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcccc-
Confidence 4889999999952 3569999999999999999999999999999999999999999999999976422100
Q ss_pred cccCcccccchhhhhhhhhcCCCccc-cccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPI-QMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
...++..++|+++.... ....+..+.+ +.. .+.+ .+++.++++.+++. .++++.+|||||+
T Consensus 72 ---------~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 142 (274)
T PRK13644 72 ---------LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQG 142 (274)
T ss_pred ---------HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHH
Confidence 01223445555444321 2223333322 211 1122 23456778888885 3678999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|.|||++|||++++. .||++++|++|++++.|+++
T Consensus 143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 220 (274)
T PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPE 220 (274)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 5999999999999995 69999999999999999988
Q ss_pred HHHHh
Q 018938 260 KVKEA 264 (348)
Q Consensus 260 ~~~~~ 264 (348)
++...
T Consensus 221 ~~~~~ 225 (274)
T PRK13644 221 NVLSD 225 (274)
T ss_pred HHhcC
Confidence 87643
No 121
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=335.18 Aligned_cols=211 Identities=25% Similarity=0.441 Sum_probs=170.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|++ .. .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 ~l~~~~l~~~~~~---------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~- 68 (232)
T PRK10771 1 MLKLTDITWLYHH---------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP- 68 (232)
T ss_pred CeEEEEEEEEECC---------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh-
Confidence 4789999999942 22 38999999999999999999999999999999999999999999986432110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-CC--CC---HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-AG--ID---PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~--~~---~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.+..++|+++....+...+..+.+ +.. .. .. ..++.++++.+++. .++++.+|||||||
T Consensus 69 ------------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 136 (232)
T PRK10771 69 ------------SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQ 136 (232)
T ss_pred ------------hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHH
Confidence 012345554443333333443332 221 11 11 23466788888885 46789999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
|++|||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||++|||++++..+||++++|++|++++.|++++
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999876668999999999999999999999999999999999888
Q ss_pred HHHh
Q 018938 261 VKEA 264 (348)
Q Consensus 261 ~~~~ 264 (348)
+...
T Consensus 217 ~~~~ 220 (232)
T PRK10771 217 LLSG 220 (232)
T ss_pred HHhC
Confidence 7653
No 122
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=344.95 Aligned_cols=222 Identities=21% Similarity=0.289 Sum_probs=174.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|++..+ .+.+++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..+.....
T Consensus 3 ~~l~~~~l~~~~~~~~~---~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEE---STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCC---CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc
Confidence 47999999999953100 012569999999999999999999999999999999999999999999999986532100
Q ss_pred ccccCcccccchhhhhhhhhcCCCccc-cccchHH-HHHhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPI-QMDVSAE-KMIFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
....++.++|++++... ....+.. ++.+.. .+.. .+++.++++.+++. .++++.+|||||
T Consensus 80 ----------~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~ 149 (280)
T PRK13633 80 ----------LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQ 149 (280)
T ss_pred ----------HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHH
Confidence 01123445665444311 1112233 332221 1222 23456788888885 367899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++.. ||++++|++|+++..|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999976669999999999999986 999999999999999999
Q ss_pred hHHHHh
Q 018938 259 DKVKEA 264 (348)
Q Consensus 259 ~~~~~~ 264 (348)
+++...
T Consensus 229 ~~~~~~ 234 (280)
T PRK13633 229 KEIFKE 234 (280)
T ss_pred HHHhcC
Confidence 887643
No 123
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.9e-46 Score=333.27 Aligned_cols=201 Identities=32% Similarity=0.491 Sum_probs=159.7
Q ss_pred EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938 32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111 (348)
Q Consensus 32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~ 111 (348)
+++||+++|++ +.+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus 1 ~~~~l~~~~~~-------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---- 69 (211)
T cd03225 1 ELKNLSFSYPD-------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS---- 69 (211)
T ss_pred CceeEEEecCC-------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC----
Confidence 36899999952 1257999999999999999999999999999999999999999999999997642110
Q ss_pred cCcccccchhhhhhhhhcCCCccc-cccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 112 SGDLSYLGGEWRREVAFAGFEVPI-QMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
...+++.++|.++.... ....+..+.+ +.. .... ..++.++++.+++. .++++.+||||||||
T Consensus 70 -------~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 142 (211)
T cd03225 70 -------LKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQR 142 (211)
T ss_pred -------HHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 01233456666554321 2233433322 211 1122 23456788888885 367899999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
|+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++++..+||++++|++|+
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999998764 8999999999999999999999999885
No 124
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-46 Score=332.49 Aligned_cols=201 Identities=24% Similarity=0.387 Sum_probs=162.2
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ +. .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 i~~~~l~~~~~~---------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~-- 67 (211)
T cd03298 1 VRLDKIRFSYGE---------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP-- 67 (211)
T ss_pred CEEEeEEEEeCC---------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--
Confidence 468999999952 22 39999999999999999999999999999999999999999999976432110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC---CC---CHHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA---GI---DPQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
.++.++|.++....+...+..+.+ +... .. ..+++.++++.+++. .++++.+||||||||
T Consensus 68 -----------~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 136 (211)
T cd03298 68 -----------ADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQR 136 (211)
T ss_pred -----------hHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHH
Confidence 123355555544444444444433 2211 11 123466788888886 367889999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|++++.
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 99999999999999999999999999999999999998766689999999999999999999999999999764
No 125
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.2e-45 Score=335.29 Aligned_cols=213 Identities=21% Similarity=0.266 Sum_probs=165.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCC-CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGS-TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~-~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
++|+++||+++|++. .. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus 5 ~~l~~~~l~~~~~~~------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQG------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCC------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCC
Confidence 589999999999530 01 35999999999999999999999999999999999999999999999997642211
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
.. .. ....+..++|+++...++...+..+.+ +. ..... .+++.++++.+++. .++++.+|||||
T Consensus 79 ~~----~~---~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge 151 (228)
T PRK10584 79 EE----AR---AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGE 151 (228)
T ss_pred HH----HH---HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHH
Confidence 00 00 000112455555544443333443322 21 11111 23456788888885 367889999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++.. ||++++|++|++++.
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999876668999999999999864 999999999998753
No 126
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=344.42 Aligned_cols=216 Identities=25% Similarity=0.353 Sum_probs=172.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|++ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 ~l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~- 71 (275)
T PRK13639 1 ILETRDLKYSYPD--------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKK- 71 (275)
T ss_pred CEEEEEEEEEeCC--------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccc-
Confidence 4889999999952 3569999999999999999999999999999999999999999999999986521100
Q ss_pred cccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
....+++.++|++++.. .....++.+ +.++. .... .+++.++++.+++. .++++.+|||||+
T Consensus 72 --------~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~ 143 (275)
T PRK13639 72 --------SLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQK 143 (275)
T ss_pred --------hHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHH
Confidence 00112345666655431 111223333 32221 1112 13456788888885 4678999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
||++|||||+.+|++|||||||+|||+.++..++++|.++.++ |.|||++|||++++..+||++++|++|++++.|+++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999998754 899999999999999999999999999999999998
Q ss_pred HHHH
Q 018938 260 KVKE 263 (348)
Q Consensus 260 ~~~~ 263 (348)
++..
T Consensus 223 ~~~~ 226 (275)
T PRK13639 223 EVFS 226 (275)
T ss_pred HHhc
Confidence 8764
No 127
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.3e-46 Score=334.74 Aligned_cols=197 Identities=23% Similarity=0.415 Sum_probs=157.8
Q ss_pred EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938 32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111 (348)
Q Consensus 32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~ 111 (348)
+++||+++|+ +.++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~------- 64 (213)
T cd03235 1 EVEDLTVSYG---------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE------- 64 (213)
T ss_pred CcccceeEEC---------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-------
Confidence 3689999994 357999999999999999999999999999999999999999999999986431
Q ss_pred cCcccccchhhhhhhhhcCCCcccc--ccchHHHHH-hccC-------CCC---HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938 112 SGDLSYLGGEWRREVAFAGFEVPIQ--MDVSAEKMI-FGVA-------GID---PQRRAELIKVLDID--LSWRMHKVSD 176 (348)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~-------~~~---~~~~~~~l~~l~l~--~~~~~~~LSg 176 (348)
.+++.++|++++.... ...+..+.+ +... ... .+++.++++.+++. .++++.+|||
T Consensus 65 ---------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 135 (213)
T cd03235 65 ---------KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSG 135 (213)
T ss_pred ---------HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCH
Confidence 1223455554443221 123343332 2111 011 23456788888885 4678899999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++| +++.
T Consensus 136 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 136 GQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999999999999999999999875 5899999999999999999999999886 4443
No 128
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=339.61 Aligned_cols=216 Identities=25% Similarity=0.281 Sum_probs=171.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~ 103 (348)
++|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 3 ~~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 3 FAIETVNLRVYYG---------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred ceEEEEeEEEEeC---------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 4799999999994 35799999999999999999999999999999999999887 499999999865
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC--CH----HHHHHHHHHcCCC------cC
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI--DP----QRRAELIKVLDID------LS 168 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~--~~----~~~~~~l~~l~l~------~~ 168 (348)
.... . ....++..++|++++...+...+..+.+ +.. ... .. .++.++++.+++. .+
T Consensus 74 ~~~~-~--------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 74 YSPD-V--------DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred cccc-c--------ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhc
Confidence 3100 0 0012334566665554444444443332 211 111 11 2355677877763 35
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ ++|||++|||++++..+||++++|+
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~ 222 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLY 222 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEE
Confidence 67899999999999999999999999999999999999999999999999853 6899999999999999999999999
Q ss_pred CCEEeeecChhHHHHh
Q 018938 249 HGKLQLAMPMDKVKEA 264 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~ 264 (348)
+|++++.|+++++.+.
T Consensus 223 ~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 223 LGKLIEVGPTRKVFEN 238 (253)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999887653
No 129
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=339.51 Aligned_cols=217 Identities=18% Similarity=0.233 Sum_probs=171.9
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~ 102 (348)
.++|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|..
T Consensus 10 ~~~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 10 QPQIKVENLNLWYG---------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED 80 (258)
T ss_pred ceeEEEeeeEEEeC---------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE
Confidence 35799999999994 35799999999999999999999999999999999999875 79999999976
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC------cCc
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID------LSW 169 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~------~~~ 169 (348)
+..... ....+++.++|+++...++. .+..+ +.+.. .+... .++.++++.+++. .++
T Consensus 81 i~~~~~---------~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 81 IYEPDV---------DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKS 150 (258)
T ss_pred cccccc---------hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcC
Confidence 421100 00112344666655433333 34333 22211 12222 2355678888762 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
++.+|||||+|||+|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++|||++++..+||++++|++
T Consensus 151 ~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~ 228 (258)
T PRK14268 151 PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLM 228 (258)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 789999999999999999999999999999999999999999999999985 3 79999999999999999999999999
Q ss_pred CEEeeecChhHHHHhh
Q 018938 250 GKLQLAMPMDKVKEAS 265 (348)
Q Consensus 250 G~i~~~g~~~~~~~~~ 265 (348)
|++++.++++++.+.+
T Consensus 229 G~i~~~~~~~~~~~~~ 244 (258)
T PRK14268 229 GELIEFGQTRQIFHNP 244 (258)
T ss_pred CEEEEeCCHHHHhcCC
Confidence 9999999998886543
No 130
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2e-45 Score=332.55 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=165.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++|++++|++ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 ~l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~- 71 (222)
T PRK10908 1 MIRFEHVSKAYLG--------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKN- 71 (222)
T ss_pred CEEEEeeEEEecC--------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCCh-
Confidence 4789999999941 3579999999999999999999999999999999999999999999999975421100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.. ...+++.++|+++....+...+..+.+ +. ..+... .++.++++.+++. .++.+.+|||||||
T Consensus 72 ---~~----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (222)
T PRK10908 72 ---RE----VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ 144 (222)
T ss_pred ---hH----HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHH
Confidence 00 011234566665554433344443322 22 112222 2345778888875 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||+|||||+.+|++|||||||++||+.++..++++|.++++ .+.|||++|||++++..+||++++|++|+++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999999999865 48999999999999999999999999999864
No 131
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=337.35 Aligned_cols=218 Identities=23% Similarity=0.345 Sum_probs=173.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus 2 ~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFYG---------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEEC---------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccc
Confidence 589999999994 35799999999999999999999999999999999999999999999999864211000
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHh-c---cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
. . .....+++.++|+++....+...+..+.+. . ..+.. ...+.++++.+++. .++.+.+||||||
T Consensus 73 ~---~--~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 147 (242)
T PRK11124 73 S---D--KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQ 147 (242)
T ss_pred c---h--hhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 0 0 000123345666655544444444444331 1 11111 23456678888885 3677899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|++++.++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 5899999999999999999999999999999999887
Q ss_pred HHH
Q 018938 260 KVK 262 (348)
Q Consensus 260 ~~~ 262 (348)
++.
T Consensus 227 ~~~ 229 (242)
T PRK11124 227 CFT 229 (242)
T ss_pred Hhc
Confidence 754
No 132
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.8e-45 Score=332.47 Aligned_cols=210 Identities=20% Similarity=0.308 Sum_probs=164.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|++.. +.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 ~l~~~~v~~~~~~~~-----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~- 74 (221)
T TIGR02211 1 LLKCENLGKRYQEGK-----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS- 74 (221)
T ss_pred CEEEEeeeEEccCCC-----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCH-
Confidence 378999999995310 12469999999999999999999999999999999999999999999999976422110
Q ss_pred cccCcccccchhhh-hhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWR-REVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
... ..++ +.++|+++...++...+..+.+ +. ..... .+++.++++.+++. .++.+.+||||||
T Consensus 75 ---~~~----~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 147 (221)
T TIGR02211 75 ---NER----AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGER 147 (221)
T ss_pred ---hHH----HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 000 0112 3466665554444344444332 21 11111 23456788888886 3678899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++++.. ||++++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999999999999999876668999999999999965 8999999999975
No 133
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-45 Score=341.13 Aligned_cols=217 Identities=22% Similarity=0.353 Sum_probs=173.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++|++++|++ +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 5 ~~~l~~~nl~~~~~~-------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 5 SVMIKVENVSFSYPN-------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN 77 (271)
T ss_pred ceEEEEEeEEEEcCC-------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC
Confidence 468999999999952 2457999999999999999999999999999999999999999999999998642110
Q ss_pred cccccCcccccchhhhhhhhhcCCCcc-ccccchHHHH-Hhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKM-IFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDG 177 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgG 177 (348)
. ..+++.++|++++.. .+...+..+. .+.. ..... ..+.++++.+++. .++++.+||||
T Consensus 78 ~-----------~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 146 (271)
T PRK13632 78 L-----------KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGG 146 (271)
T ss_pred H-----------HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHH
Confidence 0 122344556544431 2223343332 2211 11222 2356778888886 47789999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
||||++|||||+.+|++|||||||+|||+.++..++++|++++++.+.|||++||+++++. +||++++|++|+++..|+
T Consensus 147 ~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~ 225 (271)
T PRK13632 147 QKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGK 225 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999987654589999999999996 799999999999999998
Q ss_pred hhHHHH
Q 018938 258 MDKVKE 263 (348)
Q Consensus 258 ~~~~~~ 263 (348)
++++..
T Consensus 226 ~~~~~~ 231 (271)
T PRK13632 226 PKEILN 231 (271)
T ss_pred HHHHhc
Confidence 887654
No 134
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7.6e-46 Score=333.18 Aligned_cols=205 Identities=23% Similarity=0.378 Sum_probs=162.9
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 l~~~~l~~~~~~--------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~- 71 (214)
T cd03292 1 IEFINVTKTYPN--------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR- 71 (214)
T ss_pred CEEEEEEEEeCC--------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHH-
Confidence 468999999952 25799999999999999999999999999999999999999999999999764221000
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
. ...+++.++|+++....+...+..+.+ +.. .... .+++.++++.+++. .++++.+||||||||
T Consensus 72 ---~----~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 144 (214)
T cd03292 72 ---A----IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQR 144 (214)
T ss_pred ---H----HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHH
Confidence 0 012334566666554444444444322 211 1112 23456788888885 366789999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++|||++++..+||++++|++|++
T Consensus 145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999864 489999999999999999999999999974
No 135
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=342.19 Aligned_cols=217 Identities=24% Similarity=0.359 Sum_probs=173.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC---ceEEEcCeeccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP---EMVKVLGRSAFH 105 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~---G~i~i~G~~~~~ 105 (348)
.+|+++|++++|++ ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++..
T Consensus 4 ~~l~i~~l~~~~~~-------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPD-------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA 76 (282)
T ss_pred ceEEEEEEEEEcCC-------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCc
Confidence 47999999999952 23469999999999999999999999999999999999999987 899999986521
Q ss_pred cccccccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCC
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVS 175 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LS 175 (348)
... ...+..++|+++... .....++.+.+ +.. .+... +++.++++.+++. .++++.+||
T Consensus 77 ~~~-----------~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS 145 (282)
T PRK13640 77 KTV-----------WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLS 145 (282)
T ss_pred CCH-----------HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCC
Confidence 100 112344566544431 22233444332 221 12222 3456788888886 467899999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||+||++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||+++++. +||++++|++|++++.
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999987666899999999999995 7999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+++++...
T Consensus 225 g~~~~~~~~ 233 (282)
T PRK13640 225 GSPVEIFSK 233 (282)
T ss_pred CCHHHHhcC
Confidence 999887653
No 136
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-45 Score=339.73 Aligned_cols=218 Identities=18% Similarity=0.219 Sum_probs=172.0
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCe
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGR 101 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~ 101 (348)
..++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 16 ~~~~l~~~nl~~~~~---------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~ 86 (267)
T PRK14235 16 TEIKMRARDVSVFYG---------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE 86 (267)
T ss_pred CCceEEEEeEEEEEC---------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 346899999999994 35799999999999999999999999999999999999874 8999999997
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CCC--C----HHHHHHHHHHcCCC------c
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AGI--D----PQRRAELIKVLDID------L 167 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~----~~~~~~~l~~l~l~------~ 167 (348)
++.... . . ...+++.++|+++....+.....+++.+.. .+. . .+++.++++.+++. .
T Consensus 87 ~i~~~~-~----~----~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 157 (267)
T PRK14235 87 DIYDPR-L----D----VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL 157 (267)
T ss_pred ECcccc-c----c----hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 653110 0 0 012334556665543333322223332221 111 1 13356778888873 2
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEE
Confidence 457899999999999999999999999999999999999999999999999853 689999999999999999999999
Q ss_pred cCCEEeeecChhHHHHh
Q 018938 248 AHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~~~ 264 (348)
++|+++..|+++++...
T Consensus 236 ~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 236 HLGNLVEVGDTEKMFTN 252 (267)
T ss_pred ECCEEEEeCCHHHHHhC
Confidence 99999999998887654
No 137
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-45 Score=331.06 Aligned_cols=202 Identities=24% Similarity=0.422 Sum_probs=163.8
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ +.++|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 i~~~~~~~~~~---------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--- 67 (211)
T cd03264 1 LQLENLTKRYG---------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP--- 67 (211)
T ss_pred CEEEEEEEEEC---------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch---
Confidence 47899999994 357999999999999 99999999999999999999999999999999997542110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
..+++.++|.+++...+...+..+.+ +. ..+.. .+.+.++++.+++. .+.++.+||||||||
T Consensus 68 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 138 (211)
T cd03264 68 ---------QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRR 138 (211)
T ss_pred ---------HHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHH
Confidence 12344566665554444444444332 21 11111 23456788888885 367889999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++..+||++++|++|++++.|
T Consensus 139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999864 589999999999999999999999999998654
No 138
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.5e-46 Score=363.67 Aligned_cols=233 Identities=21% Similarity=0.303 Sum_probs=184.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC----CceEEEcCeecc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE----PEMVKVLGRSAF 104 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~----~G~i~i~G~~~~ 104 (348)
++|+++||++.|.... +...+++||||+|.+||++||+|+|||||||+.++|.|++++. +|+|.++|.++.
T Consensus 4 ~lL~V~nL~v~~~~~~-----~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~ 78 (539)
T COG1123 4 PLLEVENLTVEFATDG-----GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL 78 (539)
T ss_pred ceEEEeceEEEEecCC-----cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchh
Confidence 4899999999996421 2347999999999999999999999999999999999999877 699999997543
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH----hccCCC----CHHHHHHHHHHcCCCc----Ccc
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI----FGVAGI----DPQRRAELIKVLDIDL----SWR 170 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~----~~~~~~~~l~~l~l~~----~~~ 170 (348)
.-... .. .....+.+++.+|+.. +++-++..+.+ ...... ..+++.++++.+++.. +++
T Consensus 79 ~l~~~----~~---r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~y 151 (539)
T COG1123 79 GLSER----EM---RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRY 151 (539)
T ss_pred cCCHH----HH---HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccC
Confidence 22110 00 0112245666655432 23323333221 111111 1244567888888852 358
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
|++|||||||||.||+||+++|++||+||||++||+..+.+|+++|++++++.|+++|+||||+..+.++||||++|++|
T Consensus 152 PheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G 231 (539)
T COG1123 152 PHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231 (539)
T ss_pred CcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecChhHHHHhhhhhhHHHH
Q 018938 251 KLQLAMPMDKVKEASKLSLMRTV 273 (348)
Q Consensus 251 ~i~~~g~~~~~~~~~~~~~~~~~ 273 (348)
++++.|++++++.++.+.+.+.+
T Consensus 232 ~iVE~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 232 EIVETGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred EEEEecCHHHHHhccCCcccHHH
Confidence 99999999999998888766544
No 139
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.8e-45 Score=337.98 Aligned_cols=221 Identities=23% Similarity=0.320 Sum_probs=170.9
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee-----c
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS-----A 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~-----~ 103 (348)
++|+++||+++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 2 ~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 2 PLLQVSGLSKSYG---------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELEL 72 (253)
T ss_pred ceEEEeeeEEEeC---------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccccccccc
Confidence 4799999999994 3569999999999999999999999999999999999999999999999864 2
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCcc--ccccchHH-HHH-----hccCCC--CHHHHHHHHHHcCCC---cCcc
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAE-KMI-----FGVAGI--DPQRRAELIKVLDID---LSWR 170 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-----~~~~~~--~~~~~~~~l~~l~l~---~~~~ 170 (348)
..... .. .....++.++|.++... .....+.. ++. +..... ....+.++++.+++. .++.
T Consensus 73 ~~~~~----~~---~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 73 YQLSE----AE---RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred ccCCH----HH---HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 11000 00 00001123455544321 11222222 111 111111 123456788888884 3567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||+|||+++++..+||++++|++|
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999987666899999999999999999999999999
Q ss_pred EEeeecChhHHHHhh
Q 018938 251 KLQLAMPMDKVKEAS 265 (348)
Q Consensus 251 ~i~~~g~~~~~~~~~ 265 (348)
+++..++++++....
T Consensus 226 ~i~~~~~~~~~~~~~ 240 (253)
T TIGR02323 226 RVVESGLTDQVLDDP 240 (253)
T ss_pred EEEEECCHHHHhcCC
Confidence 999999988876543
No 140
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-45 Score=331.98 Aligned_cols=203 Identities=23% Similarity=0.356 Sum_probs=163.1
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~---------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--- 68 (213)
T cd03262 1 IEIKNLHKSFG---------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK--- 68 (213)
T ss_pred CEEEEEEEEEC---------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccc---
Confidence 46899999994 357999999999999999999999999999999999999999999999997642100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.....+++.++|+++....+...+..+.+ +. ...... +++.++++.+++. .++++.+|||||+|
T Consensus 69 ------~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 142 (213)
T cd03262 69 ------KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQ 142 (213)
T ss_pred ------hhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHH
Confidence 00012334566665554444434444332 21 112221 2456778888885 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
|++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++
T Consensus 143 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999875 589999999999999999999999999974
No 141
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-45 Score=340.45 Aligned_cols=214 Identities=21% Similarity=0.273 Sum_probs=171.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC--------CceEEEcCe
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE--------PEMVKVLGR 101 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~--------~G~i~i~G~ 101 (348)
||+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.
T Consensus 1 ml~~~nl~~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~ 71 (272)
T PRK13547 1 MLTADHLHVARR---------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71 (272)
T ss_pred CeEEEEEEEEEC---------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCE
Confidence 489999999994 357999999999999999999999999999999999999988 899999997
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-C-----C-CC---HHHHHHHHHHcCCC--cC
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-A-----G-ID---PQRRAELIKVLDID--LS 168 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----~-~~---~~~~~~~l~~l~l~--~~ 168 (348)
++.... ...+++.++|+++........+..+.+ +.. . . .. .+.+.++++.+++. .+
T Consensus 72 ~~~~~~-----------~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 140 (272)
T PRK13547 72 PLAAID-----------APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG 140 (272)
T ss_pred EcccCC-----------HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc
Confidence 642110 011223345554443322233444332 211 0 0 11 23456788888886 46
Q ss_pred ccCCCCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938 169 WRMHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN 239 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~ 239 (348)
+++.+|||||+|||+|||||+ .+|++|||||||+|||+.++..+.++|+++.++.|.|||+||||++++..
T Consensus 141 ~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~ 220 (272)
T PRK13547 141 RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAAR 220 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 788999999999999999999 59999999999999999999999999999876668999999999999999
Q ss_pred hCCEEEEEcCCEEeeecChhHHHH
Q 018938 240 WPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 240 ~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
+||++++|++|++++.++++++..
T Consensus 221 ~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 221 HADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred hCCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999998887754
No 142
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=6.7e-45 Score=335.75 Aligned_cols=213 Identities=21% Similarity=0.264 Sum_probs=170.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC----CCceEEEcCeeccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV----EPEMVKVLGRSAFH 105 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~----~~G~i~i~G~~~~~ 105 (348)
+|+++||+++|+ +++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~----------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~ 73 (254)
T PRK10418 4 QIELRNIALQAA----------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73 (254)
T ss_pred EEEEeCeEEEec----------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc
Confidence 699999999992 4699999999999999999999999999999999999998 99999999986521
Q ss_pred cccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-h--ccCC--CCHHHHHHHHHHcCCCc-----CccCCC
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-F--GVAG--IDPQRRAELIKVLDIDL-----SWRMHK 173 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~--~~~~--~~~~~~~~~l~~l~l~~-----~~~~~~ 173 (348)
. . ..++.++|++++.. +....+..+.. . ...+ ...+++.++++.+++.. ++.+.+
T Consensus 74 ~-~------------~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 140 (254)
T PRK10418 74 C-A------------LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFE 140 (254)
T ss_pred c-c------------cccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcc
Confidence 0 0 01122444433321 11112222211 1 0111 12345677888888853 567899
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||+|||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||+++++..+||++++|++|+++
T Consensus 141 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~ 220 (254)
T PRK10418 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220 (254)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999987666899999999999999999999999999999
Q ss_pred eecChhHHHHhh
Q 018938 254 LAMPMDKVKEAS 265 (348)
Q Consensus 254 ~~g~~~~~~~~~ 265 (348)
..++++++....
T Consensus 221 ~~~~~~~~~~~~ 232 (254)
T PRK10418 221 EQGDVETLFNAP 232 (254)
T ss_pred EecCHHHHhhCC
Confidence 999998886543
No 143
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-45 Score=335.64 Aligned_cols=212 Identities=19% Similarity=0.251 Sum_probs=170.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeecccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFHD 106 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~~ 106 (348)
+++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++. |++|+|.++|+++...
T Consensus 2 ~~~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFYG---------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEEC---------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC
Confidence 589999999994 3579999999999999999999999999999999999974 6899999999865321
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCC----C--HHHHHHHHHHcCCC------cCccC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGI----D--PQRRAELIKVLDID------LSWRM 171 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~----~--~~~~~~~l~~l~l~------~~~~~ 171 (348)
. ...+++.++|.+++..++. .+..+.+ +. .... . ..++.++++.+++. .++.+
T Consensus 73 ~-----------~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 140 (246)
T PRK14269 73 D-----------VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNA 140 (246)
T ss_pred C-----------HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCc
Confidence 0 0123345666655544333 2343332 21 1111 1 12356778888883 35678
Q ss_pred CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++||+++++..+||++++|++|+
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~ 218 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGE 218 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999985 3 8899999999999999999999999999
Q ss_pred EeeecChhHHHHh
Q 018938 252 LQLAMPMDKVKEA 264 (348)
Q Consensus 252 i~~~g~~~~~~~~ 264 (348)
+++.|+.+++...
T Consensus 219 i~~~g~~~~~~~~ 231 (246)
T PRK14269 219 LIEFGESKEFFEN 231 (246)
T ss_pred EEEECCHHHHHhC
Confidence 9999999887654
No 144
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=343.40 Aligned_cols=225 Identities=20% Similarity=0.286 Sum_probs=172.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+++|++.. ....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 5 ~~l~i~nl~~~~~~~~----~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKT----PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCC----ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc
Confidence 3589999999995310 001359999999999999999999999999999999999999999999999976421100
Q ss_pred ccccCcccccchhhhhhhhhcCCCccc-cccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPI-QMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDG 177 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG 177 (348)
... ....+++.++|+++.... ....+..+ +.+.. ..... +++.++++.+++. .++++.+||||
T Consensus 81 -----~~~-~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~G 154 (289)
T PRK13645 81 -----KIK-EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGG 154 (289)
T ss_pred -----ccc-cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHH
Confidence 000 001123345555444211 11123332 22211 11221 2345678888883 36788999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|+|||++|||++++..+||++++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999876668999999999999999999999999999999999
Q ss_pred hhHHHH
Q 018938 258 MDKVKE 263 (348)
Q Consensus 258 ~~~~~~ 263 (348)
++++..
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 888754
No 145
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.3e-45 Score=336.34 Aligned_cols=203 Identities=19% Similarity=0.329 Sum_probs=164.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~---------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~------ 67 (251)
T PRK09544 3 SLVSLENVSVSFG---------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL------ 67 (251)
T ss_pred cEEEEeceEEEEC---------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCcc------
Confidence 4799999999994 3579999999999999999999999999999999999999999999887621
Q ss_pred ccccCcccccchhhhhhhhhcCCCcccccc--chHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMD--VSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQI 184 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l 184 (348)
.+.++ ++....... .+..++.........+++.++++.+++. .++++.+|||||||||+|
T Consensus 68 -----~i~~v-----------~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 131 (251)
T PRK09544 68 -----RIGYV-----------PQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLL 131 (251)
T ss_pred -----CEEEe-----------ccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHH
Confidence 12222 222111111 1222222111122345567788888885 367889999999999999
Q ss_pred HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+||++++|++ +++..|+++++..
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999999999999999999999999998765589999999999999999999999965 7889999888754
No 146
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-45 Score=341.56 Aligned_cols=221 Identities=25% Similarity=0.354 Sum_probs=171.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++.. ...+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 2 ~l~~~~l~~~~~~~~----~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~ 77 (280)
T PRK13649 2 GINLQNVSYTYQAGT----PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKN 77 (280)
T ss_pred eEEEEEEEEEcCCCC----ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccc
Confidence 489999999995310 0014699999999999999999999999999999999999999999999999764321000
Q ss_pred cccCcccccchhhhhhhhhcCCCc--cccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDG 177 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG 177 (348)
.....+++.++|+++.. .++. .+..+ +.+.. ..... ..+.++++.+++. .++++.+||||
T Consensus 78 -------~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 149 (280)
T PRK13649 78 -------KDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGG 149 (280)
T ss_pred -------cCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 00012334456665442 1222 23333 22211 12222 2345678888885 36788999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 48999999999999999999999999999999999
Q ss_pred hhHHHH
Q 018938 258 MDKVKE 263 (348)
Q Consensus 258 ~~~~~~ 263 (348)
++++..
T Consensus 229 ~~~~~~ 234 (280)
T PRK13649 229 PKDIFQ 234 (280)
T ss_pred HHHHhc
Confidence 887754
No 147
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.4e-45 Score=336.17 Aligned_cols=212 Identities=21% Similarity=0.242 Sum_probs=165.1
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCeecccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~~~~~~~~ 108 (348)
|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVE---------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEEC---------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH
Confidence 47899999994 357999999999999999999999999999999999995 6899999999976432110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cC------CCC----HHHHHHHHHHcCCC---cCccC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VA------GID----PQRRAELIKVLDID---LSWRM 171 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~------~~~----~~~~~~~l~~l~l~---~~~~~ 171 (348)
. ...+..++|+++....+...+..+++ +. .. ..+ .+++.++++.+++. .++++
T Consensus 72 ~----------~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 141 (243)
T TIGR01978 72 D----------ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV 141 (243)
T ss_pred H----------HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccccc
Confidence 0 00111244444443333333333322 10 00 011 13456788888885 25566
Q ss_pred C-CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEcC
Q 018938 172 H-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAH 249 (348)
Q Consensus 172 ~-~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~~ 249 (348)
. +|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||++|||++++..+ ||++++|++
T Consensus 142 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 142 NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLD 220 (243)
T ss_pred ccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeC
Confidence 6 5999999999999999999999999999999999999999999999864 589999999999999998 899999999
Q ss_pred CEEeeecChhHHH
Q 018938 250 GKLQLAMPMDKVK 262 (348)
Q Consensus 250 G~i~~~g~~~~~~ 262 (348)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (243)
T TIGR01978 221 GRIVKSGDVELAK 233 (243)
T ss_pred CEEEEecCHHHhc
Confidence 9999999887554
No 148
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.6e-45 Score=355.91 Aligned_cols=212 Identities=22% Similarity=0.313 Sum_probs=169.1
Q ss_pred CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhh-hhhhh
Q 018938 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWR-REVAF 128 (348)
Q Consensus 50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 128 (348)
|...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+.............+ ..++ +.++|
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l----~~~r~~~i~~ 110 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATL----RRLRTHRVSM 110 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHH----HHHhcCCEEE
Confidence 457799999999999999999999999999999999999999999999999631000000000000 0111 35677
Q ss_pred cCCCccccccchHHHH-Hhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeec
Q 018938 129 AGFEVPIQMDVSAEKM-IFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 199 (348)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDE 199 (348)
+++...++...+..++ .++. .+.. ..++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE 190 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE 190 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 7666655555555443 3322 1222 23456788889986 367899999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhh
Q 018938 200 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 200 PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 265 (348)
||++||+.++..+.+.|.++.++.++|||+||||++++.++||||++|++|+++..|+++++...+
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 191 PFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 999999999999999999997767999999999999999999999999999999999999987654
No 149
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-45 Score=338.60 Aligned_cols=218 Identities=20% Similarity=0.222 Sum_probs=170.7
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR 101 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~ 101 (348)
..++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|++. |++|+|.++|.
T Consensus 18 ~~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 88 (268)
T PRK14248 18 KEHILEVKDLSIYYG---------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGL 88 (268)
T ss_pred CCceEEEEEEEEEeC---------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCE
Confidence 456899999999994 3679999999999999999999999999999999999864 68999999998
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCC-C----HHHHHHHHHHcCCC------c
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGI-D----PQRRAELIKVLDID------L 167 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~ 167 (348)
++..... ....+++.++|.++....+.. +.. ++.+.. ... . .+.+.++++.+++. .
T Consensus 89 ~i~~~~~---------~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 158 (268)
T PRK14248 89 NILDSNI---------NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRL 158 (268)
T ss_pred Ecccccc---------cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHH
Confidence 6532100 001123445666554433332 333 322221 111 1 12345567777763 3
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|
T Consensus 159 ~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 159 HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEE
Confidence 567899999999999999999999999999999999999999999999999853 689999999999999999999999
Q ss_pred cCCEEeeecChhHHHHhh
Q 018938 248 AHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~~~~ 265 (348)
++|++++.++++++....
T Consensus 237 ~~G~i~~~~~~~~~~~~~ 254 (268)
T PRK14248 237 LNGDLVEYDQTEQIFTSP 254 (268)
T ss_pred ECCEEEEeCCHHHHHhCC
Confidence 999999999998876543
No 150
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.6e-45 Score=337.87 Aligned_cols=212 Identities=23% Similarity=0.353 Sum_probs=170.5
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 2 l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-- 70 (256)
T TIGR03873 2 LRLSRVSWSAG---------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR-- 70 (256)
T ss_pred ceEEeEEEEEC---------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH--
Confidence 67999999994 3579999999999999999999999999999999999999999999999976422110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc------CC--C--CHHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV------AG--I--DPQRRAELIKVLDID--LSWRMHKVSDG 177 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~--~--~~~~~~~~l~~l~l~--~~~~~~~LSgG 177 (348)
...++.++|.++........+..+.+ +.. .. . ..+++.++++.+++. .++++.+||||
T Consensus 71 ---------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 141 (256)
T TIGR03873 71 ---------RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGG 141 (256)
T ss_pred ---------HHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHH
Confidence 11223455554443333333433322 211 00 0 122456778888875 36789999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|+||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|++++.|+
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence 99999999999999999999999999999999999999999864 48999999999999999999999999999999998
Q ss_pred hhHHHH
Q 018938 258 MDKVKE 263 (348)
Q Consensus 258 ~~~~~~ 263 (348)
.+++..
T Consensus 221 ~~~~~~ 226 (256)
T TIGR03873 221 PREVLT 226 (256)
T ss_pred HHHhhC
Confidence 887654
No 151
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.6e-45 Score=331.06 Aligned_cols=205 Identities=25% Similarity=0.374 Sum_probs=167.2
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+...
T Consensus 1 l~l~~v~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---- 67 (223)
T TIGR03740 1 LETKNLSKRFG---------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---- 67 (223)
T ss_pred CEEEeEEEEEC---------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----
Confidence 46899999994 35799999999999999999999999999999999999999999999999753210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC 185 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA 185 (348)
. .+.++|.++....+...+..+.+ +. .......++.++++.+++. .++.+.+|||||+||++||
T Consensus 68 ~-----------~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la 136 (223)
T TIGR03740 68 D-----------LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIA 136 (223)
T ss_pred c-----------cccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHH
Confidence 0 01234443433333333333322 11 1223455677888999886 3677899999999999999
Q ss_pred HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
|||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|+++..+++.+
T Consensus 137 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 137 IALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999999864 48999999999999999999999999999999888653
No 152
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-45 Score=318.33 Aligned_cols=215 Identities=22% Similarity=0.346 Sum_probs=177.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++|||++.. ++.+|+++||++.+||+++|+||||||||||||.|+|.+.|++|++.++|.+...-.
T Consensus 1 mi~a~nls~~~~---------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~-- 69 (259)
T COG4559 1 MIRAENLSYSLA---------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP-- 69 (259)
T ss_pred CeeeeeeEEEee---------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCC--
Confidence 589999999984 478999999999999999999999999999999999999999999999997643211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----CCC--H--HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----GID--P--QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~--~--~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
..++.+..+..+|+..+.+.+++.+.. ++.. +.. . ...++++...++. ..+.+.+|||||
T Consensus 70 ---------~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGE 140 (259)
T COG4559 70 ---------PEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGE 140 (259)
T ss_pred ---------HHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchH
Confidence 123334445556666666666676654 2321 111 1 2256678887775 367788999999
Q ss_pred HHHHHHHHHHcc------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 179 RRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 179 rQRv~lAraL~~------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
||||.+||.|++ ++++|+||||||+||...+..++++.++++++ |..|+.|-||++.+..|||||++|++||+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv 219 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRV 219 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeE
Confidence 999999999975 45699999999999999999999999999976 79999999999999999999999999999
Q ss_pred eeecChhHHHHhh
Q 018938 253 QLAMPMDKVKEAS 265 (348)
Q Consensus 253 ~~~g~~~~~~~~~ 265 (348)
++.|+++++...+
T Consensus 220 ~a~g~p~~vlt~E 232 (259)
T COG4559 220 IASGSPQDVLTDE 232 (259)
T ss_pred eecCCHHHhcCHH
Confidence 9999999988653
No 153
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-45 Score=336.61 Aligned_cols=218 Identities=18% Similarity=0.224 Sum_probs=171.0
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--C---CCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--V---EPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~---~~G~i~i~G~~ 102 (348)
.++|+++|+++.|+ .+++|+++||+|++||+++|+||||||||||+++|+|++. | ++|+|.++|.+
T Consensus 10 ~~~l~i~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 10 QEVYQINGMNLWYG---------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred CceEEEeeEEEEEC---------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEE
Confidence 35899999999994 3579999999999999999999999999999999999986 3 58999999986
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CC-CCH----HHHHHHHHHcCCC------cCc
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG-IDP----QRRAELIKVLDID------LSW 169 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~l~~l~l~------~~~ 169 (348)
+.... . ....++..++|+++....+.....+++.+.. .+ ... +++.++++.+++. .+.
T Consensus 81 ~~~~~-~--------~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 151 (259)
T PRK14274 81 ILKGK-V--------DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT 151 (259)
T ss_pred ccccc-c--------CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence 53110 0 0012234456665544333332223332221 11 111 2345677777763 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
++.+||||||||++|||||+.+|++|||||||+|||+.++..++++|.++. + +.|||++|||++++..+||++++|++
T Consensus 152 ~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~ 229 (259)
T PRK14274 152 QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYM 229 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 789999999999999999999999999999999999999999999999985 3 68999999999999999999999999
Q ss_pred CEEeeecChhHHHHhh
Q 018938 250 GKLQLAMPMDKVKEAS 265 (348)
Q Consensus 250 G~i~~~g~~~~~~~~~ 265 (348)
|+++..|+++++....
T Consensus 230 G~i~~~g~~~~~~~~~ 245 (259)
T PRK14274 230 GELVECNDTNKMFSNP 245 (259)
T ss_pred CEEEEECCHHHHhhCC
Confidence 9999999999886543
No 154
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-45 Score=336.21 Aligned_cols=217 Identities=19% Similarity=0.268 Sum_probs=170.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC---CcC--CCceEEEcCeec
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK---HMV--EPEMVKVLGRSA 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl---~~~--~~G~i~i~G~~~ 103 (348)
++|+++|+++.|+ .+++|+++||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++
T Consensus 2 ~~l~~~~~~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14245 2 VKIDARDVNFWYG---------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72 (250)
T ss_pred cEEEEEEEEEEEC---------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEec
Confidence 5799999999994 35799999999999999999999999999999999996 344 489999999865
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------cCc
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~ 169 (348)
..... . ...+++.++|+++...++. .+..+ +.+.. .+. . ...+.++++.+++. .++
T Consensus 73 ~~~~~-----~----~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (250)
T PRK14245 73 YDKGV-----Q----VDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKE 142 (250)
T ss_pred ccccc-----c----HHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhC
Confidence 32100 0 0123345666655443332 23333 22221 111 1 13456778888873 256
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + ++|||++|||++++..+||++++|++
T Consensus 143 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 143 SAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 789999999999999999999999999999999999999999999999984 3 78999999999999999999999999
Q ss_pred CEEeeecChhHHHHhhh
Q 018938 250 GKLQLAMPMDKVKEASK 266 (348)
Q Consensus 250 G~i~~~g~~~~~~~~~~ 266 (348)
|++++.|+++++.+...
T Consensus 221 G~~~~~~~~~~~~~~~~ 237 (250)
T PRK14245 221 GEMVEYDDTKKIFTNPE 237 (250)
T ss_pred CEEEEECCHHHHhcCCC
Confidence 99999999999876443
No 155
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.3e-45 Score=332.87 Aligned_cols=212 Identities=23% Similarity=0.362 Sum_probs=163.8
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+. +.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--- 70 (237)
T cd03252 1 ITFEHVRFRYKP-------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD--- 70 (237)
T ss_pred CEEEEEEEecCC-------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcC---
Confidence 468999999953 2357999999999999999999999999999999999999999999999997542110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHH---------HHHHHc--CCC--cCccCCCCCH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRA---------ELIKVL--DID--LSWRMHKVSD 176 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~l~~l--~l~--~~~~~~~LSg 176 (348)
...+++.++|+++...++ ..+..+.+ +........... ++++.+ ++. .++++.+|||
T Consensus 71 --------~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSg 141 (237)
T cd03252 71 --------PAWLRRQVGVVLQENVLF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG 141 (237)
T ss_pred --------HHHHhhcEEEEcCCchhc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCH
Confidence 011234456665543332 23444333 222222222222 223333 222 2457899999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. + |.|||++|||++++. .||++++|++|++++.+
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999985 3 899999999999996 59999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+++++...
T Consensus 219 ~~~~~~~~ 226 (237)
T cd03252 219 SHDELLAE 226 (237)
T ss_pred CHHHHHhc
Confidence 98887653
No 156
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-45 Score=332.44 Aligned_cols=212 Identities=25% Similarity=0.355 Sum_probs=170.6
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|+ .+.+|+++||+|++|++++|+||||||||||+++|+|+++|+.|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~---------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-- 69 (232)
T cd03300 1 IELENVSKFYG---------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-- 69 (232)
T ss_pred CEEEeEEEEeC---------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--
Confidence 46899999994 3579999999999999999999999999999999999999999999999976532111
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
.+..++++++....+...+..+.+ +. ..+.. ..++.++++.+++. .++.+.+||+||+||
T Consensus 70 -----------~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr 138 (232)
T cd03300 70 -----------HKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQR 138 (232)
T ss_pred -----------hhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 012344444443333333333322 11 11112 23456778888886 367889999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
++|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++||+++++..+||++++|++|++++.++.+++
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999999998765689999999999999999999999999999999988777
Q ss_pred HHh
Q 018938 262 KEA 264 (348)
Q Consensus 262 ~~~ 264 (348)
...
T Consensus 219 ~~~ 221 (232)
T cd03300 219 YEE 221 (232)
T ss_pred HhC
Confidence 543
No 157
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=5.9e-45 Score=330.26 Aligned_cols=211 Identities=20% Similarity=0.352 Sum_probs=165.7
Q ss_pred CCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938 25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104 (348)
Q Consensus 25 ~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~ 104 (348)
...+++|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+.
T Consensus 2 ~~~~~~i~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 72 (225)
T PRK10247 2 QENSPLLQLQNVGYLAG---------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS 72 (225)
T ss_pred CCCCceEEEeccEEeeC---------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcC
Confidence 34456899999999994 357999999999999999999999999999999999999999999999997542
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCC--CCHHHHHHHHHHcCCC---cCccCCCCCH
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAG--IDPQRRAELIKVLDID---LSWRMHKVSD 176 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~--~~~~~~~~~l~~l~l~---~~~~~~~LSg 176 (348)
.... ..++..++|+++...++.. +..+ +.+. ... ....++.++++.+++. .++++.+|||
T Consensus 73 ~~~~-----------~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 140 (225)
T PRK10247 73 TLKP-----------EIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSG 140 (225)
T ss_pred cCCH-----------HHHHhccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 2110 1123445555544333322 3333 2221 111 1234456788889884 3678999999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-CCEEeee
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-HGKLQLA 255 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i~~~ 255 (348)
||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++. .||++++|+ ++..+.+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~ 219 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQE 219 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhh
Confidence 99999999999999999999999999999999999999999987766899999999999996 699999995 4444444
Q ss_pred cC
Q 018938 256 MP 257 (348)
Q Consensus 256 g~ 257 (348)
|+
T Consensus 220 ~~ 221 (225)
T PRK10247 220 AR 221 (225)
T ss_pred hh
Confidence 44
No 158
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-45 Score=338.97 Aligned_cols=217 Identities=21% Similarity=0.320 Sum_probs=172.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|++. ...++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 3 ~~l~~~~l~~~~~~~------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 3 KILEVENLVFKYEKE------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV 76 (277)
T ss_pred ceEEEEEEEEEcCCC------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCH
Confidence 379999999999531 12459999999999999999999999999999999999999999999999986432110
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
..++..++|++++.. .....+..+ +.++. .+... +++.++++.+++. .++++.+|||||
T Consensus 77 -----------~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 145 (277)
T PRK13642 77 -----------WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQ 145 (277)
T ss_pred -----------HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHH
Confidence 112344556544431 122233333 32221 12222 2346778888875 366789999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
+||++|||||+.+|++|||||||++||+.++..++++|++++++.|.|||++|||++++. .||++++|++|++++.|++
T Consensus 146 ~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~ 224 (277)
T PRK13642 146 KQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAP 224 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997766999999999999997 5999999999999999998
Q ss_pred hHHHH
Q 018938 259 DKVKE 263 (348)
Q Consensus 259 ~~~~~ 263 (348)
+++..
T Consensus 225 ~~~~~ 229 (277)
T PRK13642 225 SELFA 229 (277)
T ss_pred HHHhc
Confidence 88764
No 159
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=336.79 Aligned_cols=217 Identities=18% Similarity=0.198 Sum_probs=171.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~ 102 (348)
.++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~i~nl~~~~~---------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~ 81 (269)
T PRK14259 11 NIIISLQNVTISYG---------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTD 81 (269)
T ss_pred CceEEEEeEEEEEC---------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 45799999999994 3579999999999999999999999999999999999987 589999999976
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC---HHHHHHHHHHcCCC------cCcc
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID---PQRRAELIKVLDID------LSWR 170 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~---~~~~~~~l~~l~l~------~~~~ 170 (348)
+.... . -...+++.++|+++...++.. +..+.+ +.. .... .+.+.++++.+++. .+++
T Consensus 82 i~~~~-~--------~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 151 (269)
T PRK14259 82 LYDPR-V--------DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNES 151 (269)
T ss_pred ccccc-C--------CHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCC
Confidence 42110 0 001233456666555443332 443332 221 1111 23345667777652 3567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC-
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH- 249 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~- 249 (348)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++|||++++..+||++++|++
T Consensus 152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~ 229 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAE 229 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEecc
Confidence 89999999999999999999999999999999999999999999999984 3 68999999999999999999999996
Q ss_pred ----------CEEeeecChhHHHHhh
Q 018938 250 ----------GKLQLAMPMDKVKEAS 265 (348)
Q Consensus 250 ----------G~i~~~g~~~~~~~~~ 265 (348)
|++++.|+++++.+.+
T Consensus 230 ~~~~~~~g~~g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 230 EVEGGSGGKVGYLVEFNETKKIFNSP 255 (269)
T ss_pred ccccccccccceEEEeCCHHHHHhCc
Confidence 6789999999887644
No 160
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=332.73 Aligned_cols=217 Identities=21% Similarity=0.236 Sum_probs=172.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~ 103 (348)
++|+++|++++|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++
T Consensus 3 ~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 3 IKMESKNLNLWYG---------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred cEEEEEEeEEEEC---------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence 6899999999994 35799999999999999999999999999999999999875 789999999865
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCC-C----HHHHHHHHHHcCCC------cCc
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGI-D----PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~----~~~~~~~l~~l~l~------~~~ 169 (348)
..... -....++.++|+++....+. .+..+ +.+. ..+. . ..++.++++.+++. .++
T Consensus 74 ~~~~~---------~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (251)
T PRK14270 74 YDKDV---------DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143 (251)
T ss_pred ccccc---------cHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhC
Confidence 32100 00112344566655443333 34333 2221 1111 1 12345678888763 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++||+++++..+||++++|++
T Consensus 144 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~ 221 (251)
T PRK14270 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLM 221 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEEC
Confidence 7899999999999999999999999999999999999999999999999864 58999999999999999999999999
Q ss_pred CEEeeecChhHHHHhhh
Q 018938 250 GKLQLAMPMDKVKEASK 266 (348)
Q Consensus 250 G~i~~~g~~~~~~~~~~ 266 (348)
|++++.++++++.....
T Consensus 222 G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14270 222 GDLIEFNKTEKIFLEPQ 238 (251)
T ss_pred CeEEEeCCHHHHhcCCC
Confidence 99999999998865443
No 161
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6.9e-45 Score=327.06 Aligned_cols=203 Identities=26% Similarity=0.445 Sum_probs=164.3
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
++++||+++|+ ..+.++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 1 ~~~~~l~~~~~-----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--- 66 (213)
T TIGR01277 1 LALDKVRYEYE-----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--- 66 (213)
T ss_pred CeEEeeeEEeC-----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC---
Confidence 46899999994 2467999999999999999999999999999999999999999999998643210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-C--CC---CHHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-A--GI---DPQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
..++.++|+++....+...+..+.+ +.. . .. ...++.++++.+++. .++.+.+|||||+||
T Consensus 67 ----------~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 136 (213)
T TIGR01277 67 ----------PYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR 136 (213)
T ss_pred ----------hhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHH
Confidence 1123455555554444444443332 221 1 11 123456788888885 367889999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
++|||||+.+|++|||||||++||+.++..+.++|+++.++.+.|||++||+++++..+||++++|++|++++.|.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999999876668999999999999999999999999999988764
No 162
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-45 Score=374.91 Aligned_cols=234 Identities=21% Similarity=0.253 Sum_probs=181.5
Q ss_pred CCeEEEeceEEEecCCCC--CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccc
Q 018938 28 KPTVEINALKFTYPGIDG--HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH 105 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~--~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~ 105 (348)
.++|+++||++.|+...+ .+..+...+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 368999999999952100 000012469999999999999999999999999999999999999999999999986532
Q ss_pred cccccccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc--cCCC-C----HHHHHHHHHHcCCC---cCccCC
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG--VAGI-D----PQRRAELIKVLDID---LSWRMH 172 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~--~~~~-~----~~~~~~~l~~l~l~---~~~~~~ 172 (348)
... .. ...+++.++|++++. .++..+++.+.+ +. ..+. . .+++.++++.+++. .+++++
T Consensus 391 ~~~----~~----~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 462 (623)
T PRK10261 391 LSP----GK----LQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH 462 (623)
T ss_pred CCH----HH----HHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 110 00 001233466665543 233344444332 11 1111 1 13456789999985 367899
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+||||++++..+||+|++|++|++
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999877799999999999999999999999999999
Q ss_pred eeecChhHHHHhhhhhh
Q 018938 253 QLAMPMDKVKEASKLSL 269 (348)
Q Consensus 253 ~~~g~~~~~~~~~~~~~ 269 (348)
++.|+++++...+.+.+
T Consensus 543 v~~g~~~~i~~~p~~~~ 559 (623)
T PRK10261 543 VEIGPRRAVFENPQHPY 559 (623)
T ss_pred EEecCHHHHhcCCCCHH
Confidence 99999999876554433
No 163
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-45 Score=333.93 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=170.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCeec
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRSA 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~~ 103 (348)
++|+++|++++|+ .+++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++
T Consensus 3 ~~l~~~~l~~~~~---------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 3 NIISAKDVHLSYG---------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI 73 (251)
T ss_pred ceEEEEeeEEEEC---------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence 4799999999994 3679999999999999999999999999999999999986 4799999999864
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------cCc
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~ 169 (348)
..... . ...+++.+++++++...+. .+..+ +.+.. .+. . ..++.++++.+++. .++
T Consensus 74 ~~~~~-----~----~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (251)
T PRK14251 74 YGSKM-----D----LVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDR 143 (251)
T ss_pred ccccc-----h----HHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhcc
Confidence 32100 0 0112334555544433332 23333 22221 111 1 12345677777773 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|+++. + +.|||++|||++++..+||++++|++
T Consensus 144 ~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14251 144 NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMN 221 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 789999999999999999999999999999999999999999999999985 3 68999999999999999999999999
Q ss_pred CEEeeecChhHHHHhhh
Q 018938 250 GKLQLAMPMDKVKEASK 266 (348)
Q Consensus 250 G~i~~~g~~~~~~~~~~ 266 (348)
|+++..++.+++...+.
T Consensus 222 G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14251 222 GDLIEAGPTEEMFIAPK 238 (251)
T ss_pred CEEEEeCCHHHHHhCCC
Confidence 99999999888765443
No 164
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.9e-45 Score=365.62 Aligned_cols=215 Identities=22% Similarity=0.352 Sum_probs=176.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|..+.....
T Consensus 10 ~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 10 PLLCARSISKQYS---------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP 80 (510)
T ss_pred ceEEEEeEEEEeC---------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 5799999999994 3679999999999999999999999999999999999999999999999976422110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCC--CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGI--DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~ 183 (348)
. ...+..++|+++....+..+++.+.+ +..... ..+++.++++.+++. .++++.+|||||||||+
T Consensus 81 ~----------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 150 (510)
T PRK15439 81 A----------KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVE 150 (510)
T ss_pred H----------HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHH
Confidence 0 00112355665554444455555443 222111 124567788889986 36789999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||++++|++|++++.|+++++..
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999999999999999865 48999999999999999999999999999999999888754
No 165
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=332.70 Aligned_cols=217 Identities=21% Similarity=0.256 Sum_probs=169.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--C---CCceEEEcCeec
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--V---EPEMVKVLGRSA 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~---~~G~i~i~G~~~ 103 (348)
++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.. | ++|+|.++|.++
T Consensus 4 ~~l~~~~l~~~~~---------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 4 PILQVSDLSVYYN---------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred ceEEEEeeEEEEC---------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence 4799999999994 3579999999999999999999999999999999999853 5 489999999765
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------cCc
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~ 169 (348)
..... ....+++.++|++++...+. .+..+ +.+.. .+. . ...+.++++.+++. .++
T Consensus 75 ~~~~~---------~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (252)
T PRK14239 75 YSPRT---------DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHD 144 (252)
T ss_pred cCccc---------chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhc
Confidence 21100 00122344666655543333 33333 22221 111 1 12345567777752 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
.+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+||++++|++
T Consensus 145 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14239 145 SALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLD 222 (252)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 7899999999999999999999999999999999999999999999999853 58999999999999999999999999
Q ss_pred CEEeeecChhHHHHhhh
Q 018938 250 GKLQLAMPMDKVKEASK 266 (348)
Q Consensus 250 G~i~~~g~~~~~~~~~~ 266 (348)
|++++.|+.+++.+.+.
T Consensus 223 G~i~~~g~~~~~~~~~~ 239 (252)
T PRK14239 223 GDLIEYNDTKQMFMNPK 239 (252)
T ss_pred CEEEEeCCHHHHHhCCC
Confidence 99999999998866443
No 166
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=334.45 Aligned_cols=220 Identities=19% Similarity=0.305 Sum_probs=171.8
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-----CceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-----PEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-----~G~i~i~G~~ 102 (348)
-++|+++|++++|+ ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 5 ~~~l~~~nl~~~~~---------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 5 IPAIKVNNLSFYYD---------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN 75 (261)
T ss_pred cceEEEeeEEEEeC---------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEE
Confidence 35799999999994 357999999999999999999999999999999999999875 6888888865
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCC-C----HHHHHHHHHHcCCC------cC
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGI-D----PQRRAELIKVLDID------LS 168 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~----~~~~~~~l~~l~l~------~~ 168 (348)
+..... . ...+++.++|.++...++. .+..+ +.+. ..+. . .+.+.++++.+++. .+
T Consensus 76 i~~~~~-----~----~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 145 (261)
T PRK14258 76 IYERRV-----N----LNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIH 145 (261)
T ss_pred hhcccc-----c----hHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhc
Confidence 421000 0 0112334555544433333 34433 2221 1111 1 12345677788763 25
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+.+.+|||||+||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++++..+||++++|+
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence 67899999999999999999999999999999999999999999999999865568999999999999999999999999
Q ss_pred C-----CEEeeecChhHHHHhhh
Q 018938 249 H-----GKLQLAMPMDKVKEASK 266 (348)
Q Consensus 249 ~-----G~i~~~g~~~~~~~~~~ 266 (348)
+ |+++..++++++.+.+.
T Consensus 226 ~~~~~~G~i~~~~~~~~~~~~~~ 248 (261)
T PRK14258 226 GNENRIGQLVEFGLTKKIFNSPH 248 (261)
T ss_pred cCCCcCceEEEeCCHHHHHhCCC
Confidence 9 99999999999876544
No 167
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.2e-45 Score=349.75 Aligned_cols=214 Identities=22% Similarity=0.349 Sum_probs=172.5
Q ss_pred ceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCc
Q 018938 35 ALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114 (348)
Q Consensus 35 ~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~ 114 (348)
||+++|+ +.. + ++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... .
T Consensus 4 ~l~~~~~---------~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~-----~ 67 (354)
T TIGR02142 4 RFSKRLG---------DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK-----G 67 (354)
T ss_pred EEEEEEC---------CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcc-----c
Confidence 8999994 233 5 9999999999999999999999999999999999999999999986532110 0
Q ss_pred ccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHH
Q 018938 115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMG 187 (348)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAra 187 (348)
.. ....++.++|++++..++..+++.+++ ++..... ..++.++++.+++. .++++.+|||||||||+||||
T Consensus 68 ~~--~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAra 145 (354)
T TIGR02142 68 IF--LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRA 145 (354)
T ss_pred cc--cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 00 011234566666655555555554433 3222111 23467788999986 477899999999999999999
Q ss_pred HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhh
Q 018938 188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 266 (348)
|+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|+++..|+++++...+.
T Consensus 146 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 146 LLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred HHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 9999999999999999999999999999999987668999999999999999999999999999999999998876544
No 168
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=334.50 Aligned_cols=221 Identities=18% Similarity=0.184 Sum_probs=173.8
Q ss_pred cCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEE
Q 018938 24 MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKV 98 (348)
Q Consensus 24 m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i 98 (348)
|+...++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++. |++|+|.+
T Consensus 14 ~~~~~~~l~~~nl~~~~~---------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYG---------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84 (267)
T ss_pred cCCCCeEEEEeeEEEEEC---------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence 455567899999999994 3679999999999999999999999999999999999986 47999999
Q ss_pred cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC----
Q 018938 99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID---- 166 (348)
Q Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~---- 166 (348)
+|.++..... . ....++.++|+++....+. .+..+ +.+.. .+. . ..++.++++.+++.
T Consensus 85 ~g~~~~~~~~-----~----~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~ 154 (267)
T PRK14237 85 RGIDINRKEI-----N----VYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK 154 (267)
T ss_pred CCEEcccccC-----C----hHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh
Confidence 9976521100 0 0112344566655433332 23333 32221 111 1 12345667777763
Q ss_pred --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
.++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++..+||++
T Consensus 155 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i 232 (267)
T PRK14237 155 DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYT 232 (267)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEE
Confidence 356789999999999999999999999999999999999999999999999984 3 689999999999999999999
Q ss_pred EEEcCCEEeeecChhHHHHhh
Q 018938 245 VYVAHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 245 ~~l~~G~i~~~g~~~~~~~~~ 265 (348)
++|++|++++.|+++++....
T Consensus 233 ~~l~~G~i~~~g~~~~~~~~~ 253 (267)
T PRK14237 233 AFFYLGDLIEYDKTRNIFTNP 253 (267)
T ss_pred EEEECCEEEEeCCHHHHhcCC
Confidence 999999999999998886543
No 169
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=334.08 Aligned_cols=215 Identities=19% Similarity=0.249 Sum_probs=169.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~ 104 (348)
+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 4 ~l~i~~v~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~ 74 (258)
T PRK14241 4 RIDVKDLNIYYG---------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74 (258)
T ss_pred cEEEeeEEEEEC---------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecc
Confidence 699999999995 35799999999999999999999999999999999999874 6999999997642
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC-C----HHHHHHHHHHcCCC------cCcc
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-D----PQRRAELIKVLDID------LSWR 170 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~----~~~~~~~l~~l~l~------~~~~ 170 (348)
... . ....+++.++|+++....+...+..+.+ +.. ... . .+.+.++++.+++. .++.
T Consensus 75 ~~~-~--------~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (258)
T PRK14241 75 GPG-V--------DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKP 145 (258)
T ss_pred ccc-c--------ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCC
Confidence 100 0 0012234456665544444333443322 211 111 1 12345677778762 3567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc--
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-- 248 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~-- 248 (348)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++ + ++|||++||+++++..+||++++|+
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~ 223 (258)
T PRK14241 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLE 223 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecc
Confidence 89999999999999999999999999999999999999999999999985 3 6899999999999999999999996
Q ss_pred ----CCEEeeecChhHHHHh
Q 018938 249 ----HGKLQLAMPMDKVKEA 264 (348)
Q Consensus 249 ----~G~i~~~g~~~~~~~~ 264 (348)
+|++++.++++++...
T Consensus 224 ~~~~~g~i~~~~~~~~~~~~ 243 (258)
T PRK14241 224 ATGKPGRLVEIDDTEKIFSN 243 (258)
T ss_pred cCCCCceEEecCCHHHHHhC
Confidence 7999999999887653
No 170
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-45 Score=367.00 Aligned_cols=215 Identities=18% Similarity=0.274 Sum_probs=174.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 4 ~~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 4 PYISMAGIGKSFG---------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH 74 (510)
T ss_pred ceEEEeeeEEEcC---------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCH
Confidence 5799999999994 3579999999999999999999999999999999999999999999999976432110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc------CCC---C----HHHHHHHHHHcCCC--cCccCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV------AGI---D----PQRRAELIKVLDID--LSWRMH 172 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~---~----~~~~~~~l~~l~l~--~~~~~~ 172 (348)
. ...+..++|+++....+..+++.+.+ +.. .+. + .+++.++++.+++. .++++.
T Consensus 75 ~----------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (510)
T PRK09700 75 K----------LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA 144 (510)
T ss_pred H----------HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh
Confidence 0 01123456665554444444444432 211 011 1 13456788888886 367899
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||++++|++|++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 489999999999999999999999999999
Q ss_pred eeecChhHHHH
Q 018938 253 QLAMPMDKVKE 263 (348)
Q Consensus 253 ~~~g~~~~~~~ 263 (348)
+..|+++++..
T Consensus 224 ~~~g~~~~~~~ 234 (510)
T PRK09700 224 VCSGMVSDVSN 234 (510)
T ss_pred eeecchhhCCH
Confidence 99998887653
No 171
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.2e-44 Score=336.58 Aligned_cols=227 Identities=21% Similarity=0.351 Sum_probs=173.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||++.|+...-.....++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+.....
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 37999999999952000000003679999999999999999999999999999999999999999999999975422110
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC---cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID---LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~---~~~~~~~LS 175 (348)
. ....+++.++|+++... +....+..+.+ +. ..... ...+.++++.+++. .++.+.+||
T Consensus 82 ~--------~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 153 (268)
T PRK10419 82 A--------QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLS 153 (268)
T ss_pred h--------HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCC
Confidence 0 00012334555544421 22223333321 11 11111 12456788888885 367889999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++.+.|||++||+++++..+||++++|++|++++.
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999999999999999999999999998766689999999999999999999999999999999
Q ss_pred cChhHHHH
Q 018938 256 MPMDKVKE 263 (348)
Q Consensus 256 g~~~~~~~ 263 (348)
|+++++..
T Consensus 234 g~~~~~~~ 241 (268)
T PRK10419 234 QPVGDKLT 241 (268)
T ss_pred CChhhccC
Confidence 99888753
No 172
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.2e-45 Score=365.60 Aligned_cols=214 Identities=20% Similarity=0.306 Sum_probs=173.9
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 3 ~~i~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 3 ALLQLKGIDKAFP---------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred ceEEEeeeEEEeC---------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 4799999999994 3579999999999999999999999999999999999999999999999976422110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC------CCC----HHHHHHHHHHcCCC--cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA------GID----PQRRAELIKVLDID--LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~----~~~~~~~l~~l~l~--~~~~~~~LS 175 (348)
. ...++.++|+++....+..+++.+.+ ++.. ..+ ..++.++++.+++. .++++.+||
T Consensus 74 ~----------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 143 (501)
T PRK10762 74 K----------SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELS 143 (501)
T ss_pred H----------HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCC
Confidence 0 01123455665554444445555433 2211 111 13456788888886 367889999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||++++|++|+++..
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999864 589999999999999999999999999999999
Q ss_pred cChhHHH
Q 018938 256 MPMDKVK 262 (348)
Q Consensus 256 g~~~~~~ 262 (348)
++++++.
T Consensus 223 ~~~~~~~ 229 (501)
T PRK10762 223 REVADLT 229 (501)
T ss_pred cCcCcCC
Confidence 8887664
No 173
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-44 Score=331.24 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=171.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--C---CCceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--V---EPEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~---~~G~i~i~G~~~~ 104 (348)
.|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.
T Consensus 4 ~l~~~nl~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 74 (252)
T PRK14256 4 KVKLEQLNVHFG---------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY 74 (252)
T ss_pred EEEEEEEEEEeC---------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence 689999999994 3579999999999999999999999999999999999985 3 5899999998653
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CC-CC----HHHHHHHHHHcCCC------cCcc
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AG-ID----PQRRAELIKVLDID------LSWR 170 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~----~~~~~~~l~~l~l~------~~~~ 170 (348)
.... . ...+++.++|+++....+...+..+.+ +.. .. .. .+++.++++.+++. .+..
T Consensus 75 ~~~~-----~----~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (252)
T PRK14256 75 DRGV-----D----PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSN 145 (252)
T ss_pred cccC-----C----hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCC
Confidence 2100 0 011234456665554444434443322 211 11 11 13356677788863 2456
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++||+++++..+||++++|++|
T Consensus 146 ~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14256 146 AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMG 223 (252)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999864 579999999999999999999999999
Q ss_pred EEeeecChhHHHHhhh
Q 018938 251 KLQLAMPMDKVKEASK 266 (348)
Q Consensus 251 ~i~~~g~~~~~~~~~~ 266 (348)
++++.++++++...+.
T Consensus 224 ~i~~~~~~~~~~~~~~ 239 (252)
T PRK14256 224 DLVECGETKKIFTTPE 239 (252)
T ss_pred EEEEeCCHHHHHhCCC
Confidence 9999999988876543
No 174
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.3e-44 Score=328.89 Aligned_cols=212 Identities=26% Similarity=0.388 Sum_probs=170.8
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ .+.+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 i~i~~l~~~~~---------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--- 68 (237)
T TIGR00968 1 IEIANISKRFG---------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--- 68 (237)
T ss_pred CEEEEEEEEEC---------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---
Confidence 46899999995 357999999999999999999999999999999999999999999999997642110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
..++.++|+++....+...+..+.+ +.. .+.. .+.+.++++.+++. .++.+.+||+||+||
T Consensus 69 ----------~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr 138 (237)
T TIGR00968 69 ----------ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQR 138 (237)
T ss_pred ----------hhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHH
Confidence 0122344554443333333333322 211 1111 23456778888875 366789999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
++|||||+.+|+++||||||+|||+.++..++++|+++.++.++|||++||+++++..+||++++|++|++++.++.+++
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999998765589999999999999999999999999999999998887
Q ss_pred HHh
Q 018938 262 KEA 264 (348)
Q Consensus 262 ~~~ 264 (348)
...
T Consensus 219 ~~~ 221 (237)
T TIGR00968 219 YDH 221 (237)
T ss_pred HcC
Confidence 653
No 175
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-44 Score=329.39 Aligned_cols=211 Identities=23% Similarity=0.365 Sum_probs=170.0
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ . ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~---------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-- 68 (235)
T cd03299 1 LKVENLSKDWK---------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-- 68 (235)
T ss_pred CeeEeEEEEeC---------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--
Confidence 46899999994 2 38999999999999999999999999999999999999999999999976532110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
.++.+++.++....+...+..+. .+.. .... .+.+.++++.+++. .++++.+|||||+||
T Consensus 69 -----------~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 137 (235)
T cd03299 69 -----------EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQR 137 (235)
T ss_pred -----------hHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHH
Confidence 12234555444333333343332 2211 1111 12346778888885 467899999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
++|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++||+++++..+||++++|++|++++.++.+++
T Consensus 138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999998765689999999999999999999999999999999988877
Q ss_pred HHh
Q 018938 262 KEA 264 (348)
Q Consensus 262 ~~~ 264 (348)
.+.
T Consensus 218 ~~~ 220 (235)
T cd03299 218 FKK 220 (235)
T ss_pred HhC
Confidence 553
No 176
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.6e-44 Score=325.97 Aligned_cols=203 Identities=25% Similarity=0.396 Sum_probs=158.5
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ +.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+.....
T Consensus 3 l~~~~l~~~~~~-------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-- 73 (220)
T cd03245 3 IEFRNVSFSYPN-------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP-- 73 (220)
T ss_pred EEEEEEEEEcCC-------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH--
Confidence 789999999952 12569999999999999999999999999999999999999999999999975421100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC--cCc-----------cCCCCCH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID--LSW-----------RMHKVSD 176 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~-----------~~~~LSg 176 (348)
...++.++|.++...++. .+..+.+ +...........++++.+++. .++ .+.+|||
T Consensus 74 ---------~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 143 (220)
T cd03245 74 ---------ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred ---------HHHHhhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence 112334566655443332 3444433 222222334455666766663 122 3469999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||++|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++|||++++ .+||++++|++|++++.
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 999999999999999999999999999999999999999999864 38999999999987 69999999999999764
No 177
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-44 Score=325.74 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=161.8
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
+++ ||+|+|+ ++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 2 ~~~-~l~~~~~---------~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-- 66 (214)
T cd03297 2 LCV-DIEKRLP---------DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRK-- 66 (214)
T ss_pred cee-eeeEecC---------Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc--
Confidence 455 9999995 3444 99999999 9999999999999999999999999999999999976431100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCC----CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGI----DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~ 183 (348)
... ....++.++|+++....+...+..+.+ +..... ..+++.++++.+++. .++++.+||||||||++
T Consensus 67 ---~~~--~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 141 (214)
T cd03297 67 ---KIN--LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVA 141 (214)
T ss_pred ---hhh--hhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHH
Confidence 000 001234566665554444444444332 221111 123456788888886 36788999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+||++++|++|++++.|
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 142 LARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999997666899999999999999999999999999998654
No 178
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=329.68 Aligned_cols=217 Identities=17% Similarity=0.210 Sum_probs=170.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-----CceEEEcCeec
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-----PEMVKVLGRSA 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-----~G~i~i~G~~~ 103 (348)
++|+++||+++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|..+
T Consensus 3 ~~l~~~~l~~~~~---------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 3 PKIKIRGVNFFYH---------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI 73 (251)
T ss_pred ceEEEEEEEEEEC---------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEc
Confidence 5799999999994 357999999999999999999999999999999999999887 59999999764
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCCC-----HHHHHHHHHHcCCC------cCc
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGID-----PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-----~~~~~~~l~~l~l~------~~~ 169 (348)
..... ....+++.++|+++...++.. +.. ++.+.. .+.. .+...++++.+++. .++
T Consensus 74 ~~~~~---------~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 143 (251)
T PRK14249 74 YSPNL---------DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHK 143 (251)
T ss_pred ccccc---------ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhC
Confidence 21100 001233456666555443332 333 332221 1111 12344556666652 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||+++++..+||++++|++
T Consensus 144 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14249 144 SGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLT 221 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999984 3 78999999999999999999999999
Q ss_pred CEEeeecChhHHHHhhh
Q 018938 250 GKLQLAMPMDKVKEASK 266 (348)
Q Consensus 250 G~i~~~g~~~~~~~~~~ 266 (348)
|++++.++++++...+.
T Consensus 222 G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14249 222 GDLVEYGRTGEIFSRPR 238 (251)
T ss_pred CeEEEeCCHHHHHhCCC
Confidence 99999999988866543
No 179
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-44 Score=329.99 Aligned_cols=214 Identities=19% Similarity=0.240 Sum_probs=168.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~ 104 (348)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYG---------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEEC---------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 589999999995 35799999999999999999999999999999999998763 6899999998653
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------cCcc
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------LSWR 170 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~ 170 (348)
.... ....++..++|+++....+. .+..+ +.+.. .+. . .+.+.++++.+++. .+++
T Consensus 74 ~~~~---------~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 143 (250)
T PRK14240 74 KSDI---------DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKS 143 (250)
T ss_pred cccc---------chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcC
Confidence 2100 00112344566555433333 33333 22211 111 1 23345667777652 2567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+||++++|++|
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14240 144 ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNG 221 (250)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999984 3 789999999999999999999999999
Q ss_pred EEeeecChhHHHHh
Q 018938 251 KLQLAMPMDKVKEA 264 (348)
Q Consensus 251 ~i~~~g~~~~~~~~ 264 (348)
+++..++++++...
T Consensus 222 ~i~~~~~~~~~~~~ 235 (250)
T PRK14240 222 EIVEFGDTVDLFTN 235 (250)
T ss_pred EEEEeCCHHHHHhC
Confidence 99999998887654
No 180
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3e-44 Score=328.08 Aligned_cols=212 Identities=24% Similarity=0.329 Sum_probs=161.8
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|+++.|++. +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 l~i~~l~~~~~~~------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~--- 71 (238)
T cd03249 1 IEFKNVSFRYPSR------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN--- 71 (238)
T ss_pred CeEEEEEEecCCC------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcC---
Confidence 4689999999531 1246999999999999999999999999999999999999999999999997542110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHH---------Hc--CCC--cCccCCCCCH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIK---------VL--DID--LSWRMHKVSD 176 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~---------~l--~l~--~~~~~~~LSg 176 (348)
....+..++|.++...++. .+..+.+ +...........+.++ .+ ++. .++.+.+|||
T Consensus 72 --------~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~ 142 (238)
T cd03249 72 --------LRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSG 142 (238)
T ss_pred --------HHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCH
Confidence 0112334556554433332 2333332 2221112222222222 22 222 3456789999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .|.|||++||+++++. +||++++|++|++++.+
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999985 4899999999999997 89999999999999999
Q ss_pred ChhHHHH
Q 018938 257 PMDKVKE 263 (348)
Q Consensus 257 ~~~~~~~ 263 (348)
+.+++..
T Consensus 220 ~~~~~~~ 226 (238)
T cd03249 220 THDELMA 226 (238)
T ss_pred CHHHHhh
Confidence 8877654
No 181
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-44 Score=330.11 Aligned_cols=213 Identities=18% Similarity=0.251 Sum_probs=168.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~ 104 (348)
+|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 3 KFNIENLDLFYG---------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred eEEEeccEEEEC---------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence 689999999994 36799999999999999999999999999999999999885 5899999997542
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCC-H----HHHHHHHHHcCCC------cCcc
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGID-P----QRRAELIKVLDID------LSWR 170 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~----~~~~~~l~~l~l~------~~~~ 170 (348)
.... ...+++.++|++++..++. .+..+ +.+.. .+.. . +++.++++.+++. .+.+
T Consensus 74 ~~~~----------~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 142 (249)
T PRK14253 74 GNID----------VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142 (249)
T ss_pred cccc----------hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcC
Confidence 1100 0123345666655544333 33333 22221 1111 1 2334566667652 2467
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.+|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++||+++++..+||++++|++|
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G 220 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMG 220 (249)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999854 589999999999999999999999999
Q ss_pred EEeeecChhHHHHh
Q 018938 251 KLQLAMPMDKVKEA 264 (348)
Q Consensus 251 ~i~~~g~~~~~~~~ 264 (348)
+++..|+++++...
T Consensus 221 ~i~~~g~~~~~~~~ 234 (249)
T PRK14253 221 ELVEHDDTQVIFSN 234 (249)
T ss_pred EEEEeCCHHHHHcC
Confidence 99999998877543
No 182
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.7e-44 Score=329.63 Aligned_cols=195 Identities=27% Similarity=0.464 Sum_probs=154.1
Q ss_pred CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129 (348)
Q Consensus 50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (348)
+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..... ..+++.++|.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~------------~~~~~~i~~~ 99 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR------------KKFLRRIGVV 99 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc------------hhhcccEEEE
Confidence 3467999999999999999999999999999999999999999999999997532110 0122334444
Q ss_pred C-CCccccccchHHHHH-h--ccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeec
Q 018938 130 G-FEVPIQMDVSAEKMI-F--GVAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 199 (348)
Q Consensus 130 ~-~~~~~~~~~~~~~~~-~--~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDE 199 (348)
+ +........+..+.+ + ...+... +++.++++.+++. .++++.+||||||||++|||||+.+|++|||||
T Consensus 100 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 100 FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred cCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3 222222333443322 1 1112221 2345678888875 367789999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 200 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 200 PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||+|||+.++..+.++|+++.++.+.|||++||+++++..+||++++|++|++++.|
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999987666899999999999999999999999999997653
No 183
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=330.46 Aligned_cols=215 Identities=23% Similarity=0.302 Sum_probs=169.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~ 103 (348)
++|+++|+++.|+ +.++|+++||+|++||+++|+||||||||||+++|+|++.| ++|+|.++|.++
T Consensus 2 ~~l~~~~l~~~~~---------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 2 PIIEIENFSAYYG---------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred ceEEEEeeEEEeC---------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 3799999999994 35799999999999999999999999999999999999874 789999999764
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCC-C----HHHHHHHHHHcCCC------cCc
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGI-D----PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~----~~~~~~~l~~l~l~------~~~ 169 (348)
..... ....+++.++|++++...+. .+..+ +.+. .... . .+.+.++++.+++. .++
T Consensus 73 ~~~~~---------~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (250)
T PRK14262 73 YDPQL---------DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNK 142 (250)
T ss_pred ccchh---------hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhC
Confidence 21100 00112344566555433333 33333 2221 1111 1 12345567777763 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++
T Consensus 143 ~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14262 143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYR 220 (250)
T ss_pred ChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 789999999999999999999999999999999999999999999999985 3 68999999999999999999999999
Q ss_pred CEEeeecChhHHHHh
Q 018938 250 GKLQLAMPMDKVKEA 264 (348)
Q Consensus 250 G~i~~~g~~~~~~~~ 264 (348)
|+++..|+++++.+.
T Consensus 221 G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 221 GELIEYGPTREIVER 235 (250)
T ss_pred CEEEEecCHHHHHhC
Confidence 999999998887653
No 184
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=333.59 Aligned_cols=220 Identities=19% Similarity=0.269 Sum_probs=172.8
Q ss_pred cCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEE
Q 018938 24 MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKV 98 (348)
Q Consensus 24 m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i 98 (348)
++...++|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+
T Consensus 19 ~~~~~~~l~~~nl~~~~~---------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 19 LSDEQTALEVRNLNLFYG---------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred cCCCCcEEEEEEEEEEEC---------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 445567899999999994 35799999999999999999999999999999999999873 7999999
Q ss_pred cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCC-C----HHHHHHHHHHcCCC----
Q 018938 99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGI-D----PQRRAELIKVLDID---- 166 (348)
Q Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~----~~~~~~~l~~l~l~---- 166 (348)
+|.++..... ....++..++|.++....+.. +..+ +.+. ..+. . .+++.++++.+++.
T Consensus 90 ~g~~i~~~~~---------~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 159 (272)
T PRK14236 90 DGQNIYDKKV---------DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK 159 (272)
T ss_pred CCEECccccc---------CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH
Confidence 9986532100 001223445565554333332 3333 2222 1111 1 12355677777763
Q ss_pred --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
.++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++||+++++..+||++
T Consensus 160 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i 237 (272)
T PRK14236 160 DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYT 237 (272)
T ss_pred HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEE
Confidence 3567899999999999999999999999999999999999999999999999863 689999999999999999999
Q ss_pred EEEcCCEEeeecChhHHHHh
Q 018938 245 VYVAHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 245 ~~l~~G~i~~~g~~~~~~~~ 264 (348)
++|++|+++..|+++++...
T Consensus 238 ~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 238 AFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred EEEECCEEEecCCHHHHhcC
Confidence 99999999999998887654
No 185
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-44 Score=326.60 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=162.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++++|++ .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus 2 ~l~~~~l~~~~~~--------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-- 71 (229)
T cd03254 2 EIEFENVNFSYDE--------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS-- 71 (229)
T ss_pred eEEEEEEEEecCC--------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC--
Confidence 3789999999952 346999999999999999999999999999999999999999999999997542110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcC-----------CC--cCccCCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLD-----------ID--LSWRMHKVS 175 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LS 175 (348)
...+++.++|.++...++.. +..+. .+...........+.++.++ +. .++++.+||
T Consensus 72 ---------~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS 141 (229)
T cd03254 72 ---------RKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLS 141 (229)
T ss_pred ---------HHHHhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCC
Confidence 01223445666554333332 33333 22211122233333333332 21 234578999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++||+++++. .||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999984 3 899999999999996 4999999999999998
Q ss_pred cChhHHHH
Q 018938 256 MPMDKVKE 263 (348)
Q Consensus 256 g~~~~~~~ 263 (348)
++.+++..
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 88776643
No 186
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=331.56 Aligned_cols=224 Identities=19% Similarity=0.264 Sum_probs=177.6
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.++|...+.+.
T Consensus 8 ~~~i~~~~~~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~ 78 (257)
T PRK14246 8 EDVFNISRLYLYIN---------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78 (257)
T ss_pred hhheeeeeEEEecC---------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCc
Confidence 46899999999994 467999999999999999999999999999999999999999999998887654332
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC-CH----HHHHHHHHHcCCC------cCccCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-DP----QRRAELIKVLDID------LSWRMHK 173 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~~----~~~~~~l~~l~l~------~~~~~~~ 173 (348)
.... . ....++..++|.+++...+...+..+.+ +.. .+. .. .++.++++.+++. .++.+..
T Consensus 79 ~~~~---~--~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (257)
T PRK14246 79 DIFQ---I--DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQ 153 (257)
T ss_pred cccc---C--CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCccc
Confidence 2110 0 0112345567776655444444444332 221 111 11 2345677888874 2567899
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
||+|||||++|||||+.+|++|||||||+|||+.++..+.++|.+++ + +.|||++||+++++..+||++++|++|+++
T Consensus 154 LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~ 231 (257)
T PRK14246 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGELV 231 (257)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999985 3 689999999999999999999999999999
Q ss_pred eecChhHHHHhhhh
Q 018938 254 LAMPMDKVKEASKL 267 (348)
Q Consensus 254 ~~g~~~~~~~~~~~ 267 (348)
..|+.+++.+.+..
T Consensus 232 ~~g~~~~~~~~~~~ 245 (257)
T PRK14246 232 EWGSSNEIFTSPKN 245 (257)
T ss_pred EECCHHHHHhCCCc
Confidence 99999988765443
No 187
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=364.28 Aligned_cols=215 Identities=24% Similarity=0.340 Sum_probs=174.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceEEEcCeecccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMVKVLGRSAFHD 106 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i~i~G~~~~~~ 106 (348)
++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...
T Consensus 4 ~~l~~~nl~~~~~---------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~ 74 (506)
T PRK13549 4 YLLEMKNITKTFG---------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS 74 (506)
T ss_pred ceEEEeeeEEEeC---------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC
Confidence 5799999999994 36799999999999999999999999999999999999986 799999999865211
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----C-CC----HHHHHHHHHHcCCC--cCccCCCC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----G-ID----PQRRAELIKVLDID--LSWRMHKV 174 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-~~----~~~~~~~l~~l~l~--~~~~~~~L 174 (348)
.. ....++.++|++++...+..+++.+.+ +... . .+ .+++.++++.+++. .++++.+|
T Consensus 75 ~~----------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 144 (506)
T PRK13549 75 NI----------RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNL 144 (506)
T ss_pred CH----------HHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhC
Confidence 00 001123466665554444445554433 2211 1 12 13456788888885 36788999
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||||||+|||||+.+|++|||||||++||+.++..++++|.++.+ .|.|||+||||++++..+||++++|++|+++.
T Consensus 145 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999864 58999999999999999999999999999999
Q ss_pred ecChhHHHH
Q 018938 255 AMPMDKVKE 263 (348)
Q Consensus 255 ~g~~~~~~~ 263 (348)
.++++++..
T Consensus 224 ~~~~~~~~~ 232 (506)
T PRK13549 224 TRPAAGMTE 232 (506)
T ss_pred ecccccCCH
Confidence 998877643
No 188
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.9e-44 Score=315.98 Aligned_cols=177 Identities=26% Similarity=0.469 Sum_probs=148.9
Q ss_pred EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938 32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111 (348)
Q Consensus 32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~ 111 (348)
+++|++++|+ ...+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~~~~l~~~~~---------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~---- 67 (180)
T cd03214 1 EVENLSVGYG---------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS---- 67 (180)
T ss_pred CeeEEEEEEC---------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC----
Confidence 4789999994 357999999999999999999999999999999999999999999999997542110
Q ss_pred cCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHc
Q 018938 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL 189 (348)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~ 189 (348)
...++..++|.++ +++.+++. .++.+.+|||||+||++|||||+
T Consensus 68 -------~~~~~~~i~~~~q---------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~ 113 (180)
T cd03214 68 -------PKELARKIAYVPQ---------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALA 113 (180)
T ss_pred -------HHHHHHHHhHHHH---------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 0011222333211 55556654 35678999999999999999999
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
.+|++|||||||++||+.++..+.+.|.+++++.+.|||++||+++++..+||++++|++|+++..
T Consensus 114 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999998755488999999999999999999999999998754
No 189
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.9e-45 Score=305.35 Aligned_cols=214 Identities=21% Similarity=0.280 Sum_probs=177.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++++++..+... +...+|++|+|.|++||.++||||||||||||+-+++|+..|++|+|.+.|++...-..
T Consensus 5 ~ii~~~~l~ktvg~~~-----~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 5 NIIEVHHLSKTVGQGE-----GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred ceeehhhhhhhhcCCC-----cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCH
Confidence 3799999999986432 46789999999999999999999999999999999999999999999999987543211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-c--cCC--C--CHHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G--VAG--I--DPQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~--~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
. ... ....+.++|++|++.+.++++..++.. . +.+ . ....+.++++.+|+. +..+|.+||||||
T Consensus 80 d----~rA---~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQ 152 (228)
T COG4181 80 D----ARA---ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQ 152 (228)
T ss_pred H----HHH---HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHH
Confidence 0 000 012356778877777777777665432 1 122 1 134567889999986 5789999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||+|||||+..|++||.||||-+||..+-.++.++|..++++.|.|+|+||||...+.+ |+|++.|.+|+++.+
T Consensus 153 QRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 153 QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence 999999999999999999999999999999999999999999999999999999998876 999999999999753
No 190
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=337.01 Aligned_cols=218 Identities=19% Similarity=0.224 Sum_probs=170.8
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR 101 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~ 101 (348)
..++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+.. |++|+|.++|.
T Consensus 36 ~~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~ 106 (286)
T PRK14275 36 GKPHVVAKNFSIYYG---------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE 106 (286)
T ss_pred CceEEEEeeeEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCE
Confidence 456899999999994 3569999999999999999999999999999999999854 48999999997
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------c
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------L 167 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~ 167 (348)
++..... . ...+++.++|+++...++.. +..+ +.+.. ... . .+.+.++++.+++. .
T Consensus 107 ~i~~~~~-----~----~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~ 176 (286)
T PRK14275 107 DIYGKFT-----D----EVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRL 176 (286)
T ss_pred Ehhhccc-----c----hHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHh
Confidence 6421100 0 00123456666555433332 3333 22221 111 1 12345667777752 3
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|
T Consensus 177 ~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L 254 (286)
T PRK14275 177 DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFF 254 (286)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 567899999999999999999999999999999999999999999999999853 589999999999999999999999
Q ss_pred cCCEEeeecChhHHHHhh
Q 018938 248 AHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~~~~ 265 (348)
++|+++..|+++++.+.+
T Consensus 255 ~~G~i~~~g~~~~~~~~~ 272 (286)
T PRK14275 255 YEGVLVEHAPTAQLFTNP 272 (286)
T ss_pred ECCEEEEeCCHHHHHhCC
Confidence 999999999988876543
No 191
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-44 Score=335.17 Aligned_cols=217 Identities=19% Similarity=0.290 Sum_probs=170.0
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR 101 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~ 101 (348)
..++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 36 ~~~~l~i~~l~~~~~---------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~ 106 (285)
T PRK14254 36 GETVIEARDLNVFYG---------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK 106 (285)
T ss_pred CCceEEEEEEEEEEC---------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 456899999999994 3579999999999999999999999999999999999986 58999999998
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCCC---HHHHHHHHHHcCCC------cCc
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGID---PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~---~~~~~~~l~~l~l~------~~~ 169 (348)
.+.... .. ...+++.++|+++...++.. +..+ +.+. ..+.. ..++.++++.+++. .++
T Consensus 107 ~i~~~~-~~--------~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~ 176 (285)
T PRK14254 107 NVYDAD-VD--------PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDS 176 (285)
T ss_pred Eccccc-cc--------hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhC
Confidence 643210 00 01123345555544333222 3332 2221 11111 23456778888773 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE-EEc
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV-YVA 248 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~-~l~ 248 (348)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++..+|||++ +|+
T Consensus 177 ~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~ 254 (285)
T PRK14254 177 SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLT 254 (285)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEee
Confidence 7899999999999999999999999999999999999999999999999864 4799999999999999999975 679
Q ss_pred CCEEeeecChhHHHHh
Q 018938 249 HGKLQLAMPMDKVKEA 264 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~ 264 (348)
+|++++.++++++...
T Consensus 255 ~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 255 GGELVEFDDTDKIFEN 270 (285)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999998887653
No 192
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-44 Score=333.26 Aligned_cols=219 Identities=20% Similarity=0.227 Sum_probs=170.6
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCe
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGR 101 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~ 101 (348)
..++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|++.| ++|+|.++|.
T Consensus 17 ~~~~l~~~nl~~~~~---------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (274)
T PRK14265 17 DHSVFEVEGVKVFYG---------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR 87 (274)
T ss_pred CCceEEEeeEEEEeC---------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCE
Confidence 456899999999994 35799999999999999999999999999999999999763 5899999997
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCCC---HHHHHHHHHHcCCC------cCc
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGID---PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~~~l~~l~l~------~~~ 169 (348)
++..... ....++..++|++++..++.. +.. ++.+.. .... .+...++++.+++. .++
T Consensus 88 ~l~~~~~---------~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (274)
T PRK14265 88 NIYDSQI---------NSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKE 157 (274)
T ss_pred ecccccc---------hhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcC
Confidence 6432100 001223456666555433322 333 332211 1111 12334566666652 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA- 248 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~- 248 (348)
++.+|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++|||++++..+||++++|+
T Consensus 158 ~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 235 (274)
T PRK14265 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAFFNT 235 (274)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEec
Confidence 789999999999999999999999999999999999999999999999985 3 6899999999999999999999997
Q ss_pred --------CCEEeeecChhHHHHhhh
Q 018938 249 --------HGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 249 --------~G~i~~~g~~~~~~~~~~ 266 (348)
+|++++.|+++++...+.
T Consensus 236 ~~~~~~~~~G~~~~~g~~~~~~~~~~ 261 (274)
T PRK14265 236 EIDEYGKRRGKLVEFSPTEQMFGSPQ 261 (274)
T ss_pred ccccccccCceEEEeCCHHHHHhCCC
Confidence 899999999999876443
No 193
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-44 Score=335.18 Aligned_cols=210 Identities=23% Similarity=0.368 Sum_probs=165.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 6 ~l~~~~l~~~~~~--------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-- 75 (272)
T PRK15056 6 GIVVNDVTVTWRN--------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAL-- 75 (272)
T ss_pred eEEEEeEEEEecC--------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhh--
Confidence 6999999999952 357999999999999999999999999999999999999999999999997642100
Q ss_pred cccCcccccchhhhhhhhhcCCCcccc--ccchHHHHHh-c------cCC-C---CHHHHHHHHHHcCCC--cCccCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQ--MDVSAEKMIF-G------VAG-I---DPQRRAELIKVLDID--LSWRMHKV 174 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~------~~~-~---~~~~~~~~l~~l~l~--~~~~~~~L 174 (348)
. +..++|++++.... ...+..+.+. + ... . ..+++.++++.+++. .++++.+|
T Consensus 76 -~-----------~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 143 (272)
T PRK15056 76 -Q-----------KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGEL 143 (272)
T ss_pred -c-----------cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 0 01233333322110 1112222211 0 000 0 123456678888885 46789999
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
|||||||++|||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++..+||+++++ +|+++.
T Consensus 144 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 144 SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 99999999999999999999999999999999999999999999865 4899999999999999999999877 899999
Q ss_pred ecChhHHHH
Q 018938 255 AMPMDKVKE 263 (348)
Q Consensus 255 ~g~~~~~~~ 263 (348)
.|+++++..
T Consensus 222 ~g~~~~~~~ 230 (272)
T PRK15056 222 SGPTETTFT 230 (272)
T ss_pred ecCHHhccC
Confidence 999887653
No 194
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-44 Score=332.30 Aligned_cols=218 Identities=18% Similarity=0.210 Sum_probs=169.8
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~ 102 (348)
.++|+++||+++|+ ..++|+|+||+|++||+++|+||||||||||+++|+|++. |++|+|.++|.+
T Consensus 8 ~~~l~i~~v~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 78 (264)
T PRK14243 8 ETVLRTENLNVYYG---------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN 78 (264)
T ss_pred ceEEEEeeeEEEEC---------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE
Confidence 35799999999994 3579999999999999999999999999999999999875 378999999976
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCCC---HHHHHHHHHHcCCC------cCcc
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGID---PQRRAELIKVLDID------LSWR 170 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~~~l~~l~l~------~~~~ 170 (348)
+.... . ....+++.++|+++....+.. +.. ++.+.. .... .+++.++++.+++. .++.
T Consensus 79 i~~~~-~--------~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 148 (264)
T PRK14243 79 LYAPD-V--------DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQS 148 (264)
T ss_pred ccccc-c--------ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCC
Confidence 42110 0 001223446666554333322 333 332221 1111 12344556666652 3567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc--
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-- 248 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~-- 248 (348)
+.+||||||||++|||||+.+|++|||||||+|||+.++..++++|.++.+ +.|||++||+++++..+||++++|+
T Consensus 149 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~ 226 (264)
T PRK14243 149 GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVE 226 (264)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecc
Confidence 899999999999999999999999999999999999999999999999864 5799999999999999999999998
Q ss_pred -------CCEEeeecChhHHHHhhh
Q 018938 249 -------HGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 249 -------~G~i~~~g~~~~~~~~~~ 266 (348)
+|++++.|+++++...+.
T Consensus 227 ~~~~~~~~g~i~~~~~~~~~~~~~~ 251 (264)
T PRK14243 227 LTEGGGRYGYLVEFDRTEKIFNSPQ 251 (264)
T ss_pred cccccccCceEEEeCCHHHHHhCCC
Confidence 899999999999876443
No 195
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-44 Score=325.51 Aligned_cols=212 Identities=28% Similarity=0.412 Sum_probs=163.6
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ .+.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus 1 i~~~~l~~~~~~-------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--- 70 (234)
T cd03251 1 VEFKNVTFRYPG-------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT--- 70 (234)
T ss_pred CEEEEEEEEeCC-------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC---
Confidence 478999999953 1237999999999999999999999999999999999999999999999997542110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHH---------HHHHHHc--CCC--cCccCCCCCH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRR---------AELIKVL--DID--LSWRMHKVSD 176 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~LSg 176 (348)
...+++.++|.++...++. .+..+.+ +.......... .++++.+ ++. .+.++.+|||
T Consensus 71 --------~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~ 141 (234)
T cd03251 71 --------LASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSG 141 (234)
T ss_pred --------HHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCH
Confidence 0122344566655433332 3443332 22222222221 2333333 332 3456889999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++|||++++.. ||++++|++|+++..+
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeC
Confidence 99999999999999999999999999999999999999999985 3 7899999999999976 9999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+++++...
T Consensus 219 ~~~~~~~~ 226 (234)
T cd03251 219 THEELLAQ 226 (234)
T ss_pred CHHHHHHc
Confidence 88877543
No 196
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-44 Score=332.65 Aligned_cols=218 Identities=19% Similarity=0.231 Sum_probs=169.7
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR 101 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~ 101 (348)
..++|+++||+++|+ +.++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 21 ~~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 21 KKVVFDTQNLNLWYG---------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred CceEEEEeeeEEEEC---------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 346899999999994 3579999999999999999999999999999999999987 68999999997
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCC-CH----HHHHHHHHHcCC----C--c
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGI-DP----QRRAELIKVLDI----D--L 167 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~----~~~~~~l~~l~l----~--~ 167 (348)
++..... ....+++.++|+++...++.. +.. ++.+.. ... .. ..+.++++.+++ . .
T Consensus 92 ~~~~~~~---------~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 161 (271)
T PRK14238 92 NIFDKSY---------SVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL 161 (271)
T ss_pred Ecccccc---------cHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 6532100 001223456666555433332 333 332221 111 11 123444555542 1 3
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|
T Consensus 162 ~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l 239 (271)
T PRK14238 162 HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFF 239 (271)
T ss_pred hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 567899999999999999999999999999999999999999999999999853 689999999999999999999999
Q ss_pred cCCEEeeecChhHHHHhh
Q 018938 248 AHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~~~~ 265 (348)
++|+++..|+++++...+
T Consensus 240 ~~G~i~~~g~~~~~~~~~ 257 (271)
T PRK14238 240 LNGYVNEYDDTDKIFSNP 257 (271)
T ss_pred ECCEEEEeCCHHHHHcCC
Confidence 999999999998886543
No 197
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.6e-44 Score=329.60 Aligned_cols=216 Identities=23% Similarity=0.289 Sum_probs=165.7
Q ss_pred cCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCe
Q 018938 24 MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGR 101 (348)
Q Consensus 24 m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~ 101 (348)
|....++|+++||++.|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.
T Consensus 1 ~~~~~~~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~ 71 (252)
T CHL00131 1 MNKNKPILEIKNLHASVN---------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGE 71 (252)
T ss_pred CCCCCceEEEEeEEEEeC---------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCE
Confidence 344556899999999994 35799999999999999999999999999999999998 5789999999997
Q ss_pred eccccccccccCcccccchhhhh-hhhhcCCCccccccchHHHHH-hcc---------CCCC----HHHHHHHHHHcCCC
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRR-EVAFAGFEVPIQMDVSAEKMI-FGV---------AGID----PQRRAELIKVLDID 166 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~----~~~~~~~l~~l~l~ 166 (348)
++...... ...+ .+++.++....+...+..+.. +.. .... ..++.++++.+++.
T Consensus 72 ~~~~~~~~-----------~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 140 (252)
T CHL00131 72 SILDLEPE-----------ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD 140 (252)
T ss_pred EcccCChh-----------hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCc
Confidence 64321100 0011 123333332222222322221 100 0011 12345678888885
Q ss_pred ---cCccCC-CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-C
Q 018938 167 ---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-P 241 (348)
Q Consensus 167 ---~~~~~~-~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~ 241 (348)
.++.+. .|||||+|||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||++|||++++..+ |
T Consensus 141 ~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~ 219 (252)
T CHL00131 141 PSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKP 219 (252)
T ss_pred hhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhC
Confidence 256676 5999999999999999999999999999999999999999999999874 589999999999999887 9
Q ss_pred CEEEEEcCCEEeeecChhH
Q 018938 242 SHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 242 d~v~~l~~G~i~~~g~~~~ 260 (348)
|++++|++|++++.|+++.
T Consensus 220 d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 220 DYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred CEEEEEeCCEEEEecChhh
Confidence 9999999999999998773
No 198
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-44 Score=332.78 Aligned_cols=217 Identities=22% Similarity=0.257 Sum_probs=171.9
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~ 102 (348)
.++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|..
T Consensus 19 ~~~l~i~nl~~~~~---------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 19 APAMAAVNLTLGFA---------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS 89 (276)
T ss_pred CcEEEEeeEEEEEC---------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEE
Confidence 46899999999994 36799999999999999999999999999999999999885 69999999976
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CC-CCH----HHHHHHHHHcCCC------cC
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AG-IDP----QRRAELIKVLDID------LS 168 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~~----~~~~~~l~~l~l~------~~ 168 (348)
+..... ...++..++|++++...+. .+..+ +.+.. .. ... ....++++.+++. .+
T Consensus 90 i~~~~~----------~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~ 158 (276)
T PRK14271 90 IFNYRD----------VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLS 158 (276)
T ss_pred ccccch----------hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhh
Confidence 431100 0123345566655443333 33333 32221 11 122 1234567777774 24
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++|||++++..+||++++|+
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~ 236 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFF 236 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 56899999999999999999999999999999999999999999999999864 4899999999999999999999999
Q ss_pred CCEEeeecChhHHHHhhh
Q 018938 249 HGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~~~ 266 (348)
+|+++..++++++.+.+.
T Consensus 237 ~G~i~~~g~~~~~~~~~~ 254 (276)
T PRK14271 237 DGRLVEEGPTEQLFSSPK 254 (276)
T ss_pred CCEEEEeCCHHHHHhCcC
Confidence 999999999998876543
No 199
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=370.91 Aligned_cols=233 Identities=18% Similarity=0.234 Sum_probs=178.6
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccc-c
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH-D 106 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~-~ 106 (348)
+++|+++||+++|+... +..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..+.. +
T Consensus 10 ~~~l~v~~l~~~y~~~~-----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~ 84 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ-----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84 (623)
T ss_pred CceEEEeceEEEecCCC-----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccc
Confidence 46899999999995310 13579999999999999999999999999999999999999999999998864311 0
Q ss_pred ccccccCccc-ccchhhh-hhhhhcCCCc--cccccchHHHH-Hhcc---CCCCH----HHHHHHHHHcCCC-----cCc
Q 018938 107 TALTSSGDLS-YLGGEWR-REVAFAGFEV--PIQMDVSAEKM-IFGV---AGIDP----QRRAELIKVLDID-----LSW 169 (348)
Q Consensus 107 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~-~~~~---~~~~~----~~~~~~l~~l~l~-----~~~ 169 (348)
.......... .....++ ..++|++|+. .++..+++.+. .+.. .+... +++.++++.+++. .++
T Consensus 85 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 164 (623)
T PRK10261 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR 164 (623)
T ss_pred ccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence 0000000000 0000111 3467765553 23334444443 2221 12222 3566788899984 367
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
++++|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|+|||+||||++++..+||||++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 89999999999999999999999999999999999999999999999999876699999999999999999999999999
Q ss_pred CEEeeecChhHHHHhh
Q 018938 250 GKLQLAMPMDKVKEAS 265 (348)
Q Consensus 250 G~i~~~g~~~~~~~~~ 265 (348)
|++++.|+++++...+
T Consensus 245 G~i~~~g~~~~~~~~~ 260 (623)
T PRK10261 245 GEAVETGSVEQIFHAP 260 (623)
T ss_pred CeecccCCHHHhhcCC
Confidence 9999999998886543
No 200
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-44 Score=329.46 Aligned_cols=215 Identities=22% Similarity=0.253 Sum_probs=167.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-----CceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-----PEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-----~G~i~i~G~~~~ 104 (348)
+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYYG---------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEEC---------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence 689999999994 357999999999999999999999999999999999998774 799999997643
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC-CH----HHHHHHHHHcCCC------cCcc
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-DP----QRRAELIKVLDID------LSWR 170 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~~----~~~~~~l~~l~l~------~~~~ 170 (348)
.... ....++..++|+++....+...+..+.+ +.. ... .. +...++++.+++. .+++
T Consensus 75 ~~~~---------~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 145 (252)
T PRK14272 75 GPRV---------DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP 145 (252)
T ss_pred cCcc---------CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC
Confidence 2100 0011234456665554444333443322 211 111 11 1233445555531 3567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||+++++..+||++++|++|
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14272 146 ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVG 223 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999985 3 689999999999999999999999999
Q ss_pred EEeeecChhHHHHh
Q 018938 251 KLQLAMPMDKVKEA 264 (348)
Q Consensus 251 ~i~~~g~~~~~~~~ 264 (348)
++++.|+++++...
T Consensus 224 ~i~~~~~~~~~~~~ 237 (252)
T PRK14272 224 DLVEHGPTDQLFTN 237 (252)
T ss_pred EEEEeCCHHHHHhC
Confidence 99999999888654
No 201
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.8e-44 Score=360.90 Aligned_cols=212 Identities=22% Similarity=0.296 Sum_probs=169.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ +..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|..+....
T Consensus 3 ~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~-- 71 (490)
T PRK10938 3 SLQISQGTFRLS---------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS-- 71 (490)
T ss_pred eEEEEeEEEEcC---------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCC--
Confidence 699999999995 356999999999999999999999999999999999999999999999886432110
Q ss_pred cccCcccccchhhhhhhhhcCCCcccc--------ccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQ--------MDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
....++.+++.++..... ..++..+.... .....+++.++++.+++. .++++.+||||||
T Consensus 72 ---------~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 141 (490)
T PRK10938 72 ---------FEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQD-EVKDPARCEQLAQQFGITALLDRRFKYLSTGET 141 (490)
T ss_pred ---------HHHHHHHhceeccCcchhhcccchhhccccHHHhccc-chhHHHHHHHHHHHcCCHhhhhCCcccCCHHHH
Confidence 011223344443332110 01223332210 011234567888999985 4678999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|+++..|+++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 220 (490)
T PRK10938 142 RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220 (490)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 4899999999999999999999999999999999988
Q ss_pred HHHH
Q 018938 260 KVKE 263 (348)
Q Consensus 260 ~~~~ 263 (348)
++..
T Consensus 221 ~~~~ 224 (490)
T PRK10938 221 EILQ 224 (490)
T ss_pred HHhc
Confidence 7754
No 202
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.4e-44 Score=369.68 Aligned_cols=216 Identities=23% Similarity=0.322 Sum_probs=182.3
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
...|+++|++|+|+. .+..+|+|+||+|++||++||+|+||||||||+|+|+|++.|+.|+|.++|.+...-
T Consensus 469 ~g~I~~~nvsf~y~~-------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i- 540 (709)
T COG2274 469 QGEIEFENVSFRYGP-------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI- 540 (709)
T ss_pred CceEEEEEEEEEeCC-------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc-
Confidence 446999999999964 335799999999999999999999999999999999999999999999999875321
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKV 174 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~L 174 (348)
....+|+.++++.|+..++.....+++.++.+..+.+++.+++...+.. . ......|
T Consensus 541 ----------~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~L 610 (709)
T COG2274 541 ----------DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL 610 (709)
T ss_pred ----------CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCC
Confidence 1235788899998887777666666776666666655555555554431 1 2344679
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
|||||||++|||||+++|+|||||||||+||+.+.+.+.+.|.++. .|+|+|+|||++..+. .||+|++|++|+|++
T Consensus 611 SGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~ 687 (709)
T COG2274 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIR-SADRIIVLDQGKIVE 687 (709)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhh-hccEEEEccCCceec
Confidence 9999999999999999999999999999999999999999999985 3799999999999886 599999999999999
Q ss_pred ecChhHHHHh
Q 018938 255 AMPMDKVKEA 264 (348)
Q Consensus 255 ~g~~~~~~~~ 264 (348)
+|+.+++.+.
T Consensus 688 ~gs~~ell~~ 697 (709)
T COG2274 688 QGSHEELLAQ 697 (709)
T ss_pred cCCHHHHHHh
Confidence 9999999875
No 203
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-44 Score=329.80 Aligned_cols=215 Identities=16% Similarity=0.233 Sum_probs=167.8
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCeeccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRSAFH 105 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~~~~ 105 (348)
-+++||+++|+ ++++|+++||+|++||+++|+|+||||||||+++|+|+.. |++|+|.++|.++..
T Consensus 6 ~~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 6 ASVKNLNLWYG---------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEeeeEEEEEC---------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 46899999994 3579999999999999999999999999999999999976 469999999975421
Q ss_pred cccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc--cCCC--C----HHHHHHHHHHcCCC------cCccC
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAGI--D----PQRRAELIKVLDID------LSWRM 171 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~----~~~~~~~l~~l~l~------~~~~~ 171 (348)
... . ...+++.++|+++....+.....+++.+. .... . ...+.++++.+++. .++.+
T Consensus 77 ~~~-----~----~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (251)
T PRK14244 77 VDT-----N----VVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA 147 (251)
T ss_pred ccc-----c----hHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh
Confidence 100 0 01123445666554333332222333222 1111 1 12345678888874 24578
Q ss_pred CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. + ++|||++|||++++..+||++++|++|+
T Consensus 148 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~ 225 (251)
T PRK14244 148 FELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGR 225 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999984 3 7999999999999999999999999999
Q ss_pred EeeecChhHHHHhh
Q 018938 252 LQLAMPMDKVKEAS 265 (348)
Q Consensus 252 i~~~g~~~~~~~~~ 265 (348)
+++.++++++...+
T Consensus 226 i~~~~~~~~~~~~~ 239 (251)
T PRK14244 226 IVEYNTTQEIFKNP 239 (251)
T ss_pred EEEeCCHHHHhcCC
Confidence 99999988876543
No 204
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=327.12 Aligned_cols=217 Identities=22% Similarity=0.249 Sum_probs=167.6
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--C---CCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--V---EPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~---~~G~i~i~G~~ 102 (348)
.++|+++||+++|+ .+.+|+++||+|++||+++|+||||||||||+++|+|++. | ++|+|.++|.+
T Consensus 3 ~~~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 73 (252)
T PRK14255 3 KKIITSSDVHLFYG---------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN 73 (252)
T ss_pred cceEEEEeEEEEEC---------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE
Confidence 35799999999994 3579999999999999999999999999999999999864 4 48999999976
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCC-CH----HHHHHHHHHcCCC------cC
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGI-DP----QRRAELIKVLDID------LS 168 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~----~~~~~~l~~l~l~------~~ 168 (348)
+..... ....+++.++|++++...+. .+.. ++.+.. .+. .. +...+.++.+++. .+
T Consensus 74 ~~~~~~---------~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 74 IYAPNE---------DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred cccccc---------cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHh
Confidence 532100 00112234555555433332 2333 222211 111 11 2334456666642 35
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
..+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|+
T Consensus 144 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14255 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFL 221 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 67899999999999999999999999999999999999999999999999854 4899999999999999999999999
Q ss_pred CCEEeeecChhHHHHhh
Q 018938 249 HGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~~ 265 (348)
+|+++..+++.++...+
T Consensus 222 ~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14255 222 TGNLIEFADTKQMFLNP 238 (252)
T ss_pred CCEEEEeCCHHHHhcCC
Confidence 99999999988876543
No 205
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-44 Score=327.87 Aligned_cols=217 Identities=20% Similarity=0.199 Sum_probs=168.9
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~ 102 (348)
.++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+..+ ++|+|.++|.+
T Consensus 4 ~~~i~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 74 (253)
T PRK14261 4 EIILSTKNLNLWYG---------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGEN 74 (253)
T ss_pred cceEEEeeeEEEEC---------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE
Confidence 35899999999994 36799999999999999999999999999999999998753 47999999986
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc--CCC-C----HHHHHHHHHHcCCC------cC
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV--AGI-D----PQRRAELIKVLDID------LS 168 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-~----~~~~~~~l~~l~l~------~~ 168 (348)
+..... . ....++.++|.++...++.. ++.+. .+.. .+. . ...+.++++.+++. .+
T Consensus 75 ~~~~~~-----~----~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 144 (253)
T PRK14261 75 IMDSGA-----D----VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLH 144 (253)
T ss_pred cccccc-----c----hhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhh
Confidence 532100 0 00122345555554433332 33332 2221 111 1 12345566777652 35
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++||+++++..+||++++|+
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~ 222 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMY 222 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEE
Confidence 67899999999999999999999999999999999999999999999999864 5899999999999999999999999
Q ss_pred CCEEeeecChhHHHHhh
Q 018938 249 HGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~~ 265 (348)
+|+++..|+++++...+
T Consensus 223 ~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14261 223 LGKLIEFDKTTQIFENP 239 (253)
T ss_pred CCEEEEcCCHHHHHhCC
Confidence 99999999998876543
No 206
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5e-44 Score=362.13 Aligned_cols=223 Identities=24% Similarity=0.327 Sum_probs=174.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~ 103 (348)
++|+++||+++|+..+ +.+++|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++
T Consensus 4 ~~l~~~~l~~~~~~~~-----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 78 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ-----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL 78 (529)
T ss_pred ceEEEeceEEEecCCC-----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec
Confidence 5799999999995200 125799999999999999999999999999999999999986 689999999865
Q ss_pred cccccccccCcccccchhhh-hhhhhcCCCcc--ccccchHHHHHh-c--c-CCCC----HHHHHHHHHHcCCC-----c
Q 018938 104 FHDTALTSSGDLSYLGGEWR-REVAFAGFEVP--IQMDVSAEKMIF-G--V-AGID----PQRRAELIKVLDID-----L 167 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~--~-~~~~----~~~~~~~l~~l~l~-----~ 167 (348)
...... .. ..++ +.++|++|+.. .....+..+... . . .+.. .+++.++++.+++. .
T Consensus 79 ~~~~~~----~~----~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (529)
T PRK15134 79 LHASEQ----TL----RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRL 150 (529)
T ss_pred ccCCHH----HH----HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH
Confidence 321100 00 0011 24566555432 222233333221 1 1 1112 23456788889985 2
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|+|||+||||++++..+||||++|
T Consensus 151 ~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 151 TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred hhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 67899999999999999999999999999999999999999999999999987666899999999999999999999999
Q ss_pred cCCEEeeecChhHHHHh
Q 018938 248 AHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~~~ 264 (348)
++|++++.|+++++...
T Consensus 231 ~~G~i~~~g~~~~~~~~ 247 (529)
T PRK15134 231 QNGRCVEQNRAATLFSA 247 (529)
T ss_pred ECCEEEEeCCHHHHhhC
Confidence 99999999999887654
No 207
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-43 Score=322.46 Aligned_cols=210 Identities=25% Similarity=0.365 Sum_probs=161.9
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus 1 l~~~~l~~~~~~--------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~--- 69 (236)
T cd03253 1 IEFENVTFAYDP--------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT--- 69 (236)
T ss_pred CEEEEEEEEeCC--------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC---
Confidence 468999999952 356999999999999999999999999999999999999999999999997542210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcC-----------CC--cCccCCCCCH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLD-----------ID--LSWRMHKVSD 176 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LSg 176 (348)
...+++.++|.++...++. .+..+.+ +...........+.++..+ +. .++++.+|||
T Consensus 70 --------~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~ 140 (236)
T cd03253 70 --------LDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSG 140 (236)
T ss_pred --------HHHHHhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH
Confidence 0123344566655543332 3443332 2222222222222222222 21 2345789999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++ + |.|||++||+++++.. ||++++|++|+++..+
T Consensus 141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~ 217 (236)
T cd03253 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERG 217 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeC
Confidence 99999999999999999999999999999999999999999985 4 8999999999999975 9999999999999998
Q ss_pred ChhHHHH
Q 018938 257 PMDKVKE 263 (348)
Q Consensus 257 ~~~~~~~ 263 (348)
+.+++..
T Consensus 218 ~~~~~~~ 224 (236)
T cd03253 218 THEELLA 224 (236)
T ss_pred CHHHHhh
Confidence 8877654
No 208
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=337.87 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=174.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~ 102 (348)
..+|+++|++++|.+ +..++|+|+||+|++||++||+||||||||||+++|+|+.. |++|+|.++|.+
T Consensus 78 ~~~i~~~nls~~y~~-------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~ 150 (329)
T PRK14257 78 ANVFEIRNFNFWYMN-------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN 150 (329)
T ss_pred CceEEEEeeEEEecC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 358999999999953 23579999999999999999999999999999999999985 579999999987
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchH-HHHHhcc--CCCC-HH----HHHHHHHHcCCC------cC
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGV--AGID-PQ----RRAELIKVLDID------LS 168 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~----~~~~~l~~l~l~------~~ 168 (348)
+.... .. ...++..++|++++..++. .+. +++.++. .... .+ .+..+++.+++. .+
T Consensus 151 i~~~~-------~~--~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 151 TRSKK-------IS--SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred ccccc-------cc--hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhh
Confidence 53110 00 0123445666655544333 333 3333322 1122 11 134566776652 35
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
.++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||+|||+++++..+||||++|+
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~ 298 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFY 298 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 67899999999999999999999999999999999999999999999998863 6899999999999999999999999
Q ss_pred CCEEeeecChhHHHHhhhh
Q 018938 249 HGKLQLAMPMDKVKEASKL 267 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~~~~ 267 (348)
+|++++.|+++++.+.+.+
T Consensus 299 ~G~i~e~g~~~~l~~~~~~ 317 (329)
T PRK14257 299 QGWIEEAGETKTIFIHPKN 317 (329)
T ss_pred CCEEEEeCCHHHHhcCCCc
Confidence 9999999999999875543
No 209
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=327.55 Aligned_cols=215 Identities=19% Similarity=0.261 Sum_probs=169.4
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA 103 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~ 103 (348)
++|+++|++++|+ ...+|+++||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|.++
T Consensus 6 ~~l~~~~l~~~~~---------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (259)
T PRK14260 6 PAIKVKDLSFYYN---------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI 76 (259)
T ss_pred ceEEEEEEEEEEC---------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEec
Confidence 4799999999994 35799999999999999999999999999999999999875 479999999765
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CC-CC----HHHHHHHHHHcCCC------cCc
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AG-ID----PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~----~~~~~~~l~~l~l~------~~~ 169 (348)
..... ....++..++|++++...+. .+..+.+ +.. .. .. .+.+.++++.+++. .++
T Consensus 77 ~~~~~---------~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (259)
T PRK14260 77 YDPRI---------NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNK 146 (259)
T ss_pred ccccc---------chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcC
Confidence 32100 00122344666655543333 3443332 221 11 11 12345677777762 356
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA- 248 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~- 248 (348)
++.+|||||+|||+|||||+.+|++|||||||+|||+.++..++++|+++.+ ++|||++||+++++..+||++++|+
T Consensus 147 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 147 SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 7899999999999999999999999999999999999999999999999853 5899999999999999999999997
Q ss_pred ----CCEEeeecChhHHHHh
Q 018938 249 ----HGKLQLAMPMDKVKEA 264 (348)
Q Consensus 249 ----~G~i~~~g~~~~~~~~ 264 (348)
+|++++.|+++++.+.
T Consensus 225 ~~~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 225 DESRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred cCCCCceEEEeCCHHHHhcC
Confidence 5999999999988654
No 210
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.9e-44 Score=361.62 Aligned_cols=229 Identities=18% Similarity=0.270 Sum_probs=175.8
Q ss_pred CCeEEEeceEEEecCCCC--CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccc
Q 018938 28 KPTVEINALKFTYPGIDG--HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH 105 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~--~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~ 105 (348)
.++|+++||+++|+...+ ++..+++.+|+++||+|++||+++|+||||||||||+|+|+|++ |++|+|+++|.++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccc
Confidence 457999999999952000 00001357999999999999999999999999999999999998 589999999976432
Q ss_pred cccccccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hcc--C--CCC----HHHHHHHHHHcCCC---cCccC
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FGV--A--GID----PQRRAELIKVLDID---LSWRM 171 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~--~--~~~----~~~~~~~l~~l~l~---~~~~~ 171 (348)
... ... ..++..++|+++.. .++...++.+.+ +.. . ... .+++.++++.+++. .++++
T Consensus 352 ~~~----~~~----~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 423 (529)
T PRK15134 352 LNR----RQL----LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP 423 (529)
T ss_pred cch----hhH----HHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC
Confidence 110 000 01233456655443 123333443322 211 1 111 23456788889985 36789
Q ss_pred CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||++++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 99999999999999999999999999999999999999999999999986668999999999999999999999999999
Q ss_pred EeeecChhHHHHhh
Q 018938 252 LQLAMPMDKVKEAS 265 (348)
Q Consensus 252 i~~~g~~~~~~~~~ 265 (348)
+++.|+++++.+.+
T Consensus 504 i~~~~~~~~~~~~~ 517 (529)
T PRK15134 504 VVEQGDCERVFAAP 517 (529)
T ss_pred EEEEcCHHHHhcCC
Confidence 99999998887543
No 211
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-43 Score=319.10 Aligned_cols=201 Identities=23% Similarity=0.369 Sum_probs=160.4
Q ss_pred CCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938 25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104 (348)
Q Consensus 25 ~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~ 104 (348)
....++|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+.
T Consensus 6 ~~~~~~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~ 76 (214)
T PRK13543 6 HTAPPLLAAHALAFSRN---------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT 76 (214)
T ss_pred CCCcceEEEeeEEEecC---------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEcc
Confidence 34557899999999994 357999999999999999999999999999999999999999999999997642
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC-HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID-PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~-~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
.. ..++.++|.++....+...+..+.+ +. ..+.. .+...++++.+++. .+.++.+|||||
T Consensus 77 ~~--------------~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 142 (214)
T PRK13543 77 RG--------------DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQ 142 (214)
T ss_pred ch--------------hhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHH
Confidence 11 0112344444333333333333322 11 11222 23456788888875 467889999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
||||+|||||+.+|++|||||||++||+.++..+.++|+++.+ .|.|||++|||++++..+||++++++.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999999999999999999865 489999999999999999999999863
No 212
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.6e-43 Score=329.46 Aligned_cols=211 Identities=17% Similarity=0.265 Sum_probs=171.0
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+++|+. +...+|+|+||+|++||+++|+|+||||||||+++|+|++. ++|+|.++|.++....
T Consensus 3 i~~~nls~~~~~-------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~--- 71 (275)
T cd03289 3 MTVKDLTAKYTE-------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVP--- 71 (275)
T ss_pred EEEEEEEEEeCC-------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCC---
Confidence 789999999953 24579999999999999999999999999999999999986 7899999997642210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCC-----------CCHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHK-----------VSDG 177 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------LSgG 177 (348)
...+++.++|++++..++.. +..+++........+++.++++.+++. .++.+.. ||||
T Consensus 72 --------~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 72 --------LQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred --------HHHHhhhEEEECCCcccchh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 11345567777666554433 444433222223455667778888874 2344544 9999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
||||++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|||+|||+++++.. ||||++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999863 38999999999999875 99999999999999999
Q ss_pred hhHHHHh
Q 018938 258 MDKVKEA 264 (348)
Q Consensus 258 ~~~~~~~ 264 (348)
++++.+.
T Consensus 220 ~~~l~~~ 226 (275)
T cd03289 220 IQKLLNE 226 (275)
T ss_pred HHHHhhC
Confidence 9998874
No 213
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-43 Score=315.96 Aligned_cols=202 Identities=20% Similarity=0.251 Sum_probs=159.9
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++|++++|+. ...++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 5 ~~l~~~~l~~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~- 76 (207)
T cd03369 5 GEIEVENLSVRYAP-------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP- 76 (207)
T ss_pred CeEEEEEEEEEeCC-------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC-
Confidence 46999999999952 1247999999999999999999999999999999999999999999999997642110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL 188 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL 188 (348)
...+++.++|++++..+.. .+..+.+........+...+. ++ .+.++.+|||||+||++|||||
T Consensus 77 ----------~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~---l~--~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 77 ----------LEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGA---LR--VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred ----------HHHHHhhEEEEecCCcccC-ccHHHHhcccCCCCHHHHHHH---hh--ccCCCCcCCHHHHHHHHHHHHH
Confidence 0123345666655543333 244443321212222333333 33 3567899999999999999999
Q ss_pred ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
+.+|++|||||||++||+.++..++++|+++. + |.|+|++||+++++.. ||++++|++|+++..|+
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999974 3 8999999999999976 99999999999988765
No 214
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-43 Score=320.00 Aligned_cols=205 Identities=16% Similarity=0.250 Sum_probs=160.6
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ +.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 3 l~~~~l~~~~~~-------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--- 72 (221)
T cd03244 3 IEFKNVSLRYRP-------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG--- 72 (221)
T ss_pred EEEEEEEEecCC-------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC---
Confidence 789999999963 2357999999999999999999999999999999999999999999999997542111
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCCHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVSDG 177 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgG 177 (348)
...+++.++|.++...+.. .+..+.+........++..++++.+++. .+.++.+||||
T Consensus 73 --------~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G 143 (221)
T cd03244 73 --------LHDLRSRISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVG 143 (221)
T ss_pred --------HHHHhhhEEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHH
Confidence 0123345666655443332 2344333222122334444455555432 13568899999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|+||++|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++||+++++.. ||++++|++|++++.++
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999999999999999874 3 6899999999999975 99999999999988764
No 215
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-43 Score=347.13 Aligned_cols=217 Identities=26% Similarity=0.386 Sum_probs=179.7
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++++++|++|+|+ ..+||++|||++.+||+++|+|.||||||||+|+|+|.++|++|+|.++|+......
T Consensus 6 ~~ll~~~~i~K~Fg---------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 6 PPLLELRGISKSFG---------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSS 76 (500)
T ss_pred cceeeeecceEEcC---------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCC
Confidence 46899999999995 578999999999999999999999999999999999999999999999998753221
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-ccC------CCCH----HHHHHHHHHcCCC--cCccCCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA------GIDP----QRRAELIKVLDID--LSWRMHKV 174 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~----~~~~~~l~~l~l~--~~~~~~~L 174 (348)
+. ......+..+.|+..+.+++++.+++| +.. ..++ .+..++++.+++. .+.++.+|
T Consensus 77 p~----------~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~L 146 (500)
T COG1129 77 PR----------DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDL 146 (500)
T ss_pred HH----------HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhC
Confidence 11 112233455556666777777665543 221 1222 3456788888764 57788999
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
|.||||.|+|||||..+++|||||||||+|+....+.++++++++. ++|.+||+|||.++++.++||||.||++|+.+.
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 9999999999999999999999999999999999999999999986 569999999999999999999999999999999
Q ss_pred ecC-hhHHHHh
Q 018938 255 AMP-MDKVKEA 264 (348)
Q Consensus 255 ~g~-~~~~~~~ 264 (348)
..+ ..++...
T Consensus 226 ~~~~~~~~~~~ 236 (500)
T COG1129 226 TRPTAAETSED 236 (500)
T ss_pred ecccccCCCHH
Confidence 888 4555443
No 216
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.6e-43 Score=357.85 Aligned_cols=227 Identities=22% Similarity=0.310 Sum_probs=174.5
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEc-Ceecccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL-GRSAFHD 106 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~-G~~~~~~ 106 (348)
.++|+++||+++|++.+ .+.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.....-
T Consensus 277 ~~~l~~~~l~~~~~~~~----~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD----RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDM 352 (520)
T ss_pred CceEEEeccEEEeccCC----CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccc
Confidence 45899999999995200 023569999999999999999999999999999999999999999999995 5321000
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC-CCC----HHHHHHHHHHcCCC-------cCccCCC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA-GID----PQRRAELIKVLDID-------LSWRMHK 173 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~----~~~~~~~l~~l~l~-------~~~~~~~ 173 (348)
..... .. ....++.++|+++...++..+++.+.+ +... ... .+++.++++.+++. .++++.+
T Consensus 353 ~~~~~-~~----~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 427 (520)
T TIGR03269 353 TKPGP-DG----RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE 427 (520)
T ss_pred cccch-hh----HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhh
Confidence 00000 00 001233466665554444444444433 1110 111 13456788888885 2578999
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||++++|++|+++
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999997766899999999999999999999999999999
Q ss_pred eecChhHHHH
Q 018938 254 LAMPMDKVKE 263 (348)
Q Consensus 254 ~~g~~~~~~~ 263 (348)
+.|+++++.+
T Consensus 508 ~~g~~~~~~~ 517 (520)
T TIGR03269 508 KIGDPEEIVE 517 (520)
T ss_pred EECCHHHHHh
Confidence 9998877643
No 217
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=309.32 Aligned_cols=173 Identities=29% Similarity=0.499 Sum_probs=143.8
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ ..++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus 1 l~~~~l~~~~~---------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--- 68 (173)
T cd03230 1 IEVRNLSKRYG---------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--- 68 (173)
T ss_pred CEEEEEEEEEC---------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch---
Confidence 46899999995 347999999999999999999999999999999999999999999999997542110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK 190 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~ 190 (348)
..++..++|.+++...+...+..+.+ . |||||+||++|||||+.
T Consensus 69 ---------~~~~~~i~~~~q~~~~~~~~tv~~~~---------------~------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 69 ---------EEVKRRIGYLPEEPSLYENLTVRENL---------------K------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred ---------HhhhccEEEEecCCccccCCcHHHHh---------------h------------cCHHHHHHHHHHHHHHc
Confidence 12234455655543322222222211 0 99999999999999999
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
+|++|||||||++||+.++..+.++|+++.++ |.|||++|||.+++..+||++++|++|++
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999998765 89999999999999999999999999974
No 218
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=355.86 Aligned_cols=209 Identities=23% Similarity=0.376 Sum_probs=169.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 3 ~~l~~~~l~~~~~---------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 3 PYLSFDGIGKTFP---------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST 73 (501)
T ss_pred ceEEEeeeEEEEC---------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH
Confidence 5799999999994 3579999999999999999999999999999999999999999999999976421100
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc----CC-CC----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV----AG-ID----PQRRAELIKVLDID--LSWRMHKVSD 176 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~-~~----~~~~~~~l~~l~l~--~~~~~~~LSg 176 (348)
...+++.++|+++....+...+..+.+ +.. .. .. .+++.++++.+++. .++++.+|||
T Consensus 74 ----------~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 143 (501)
T PRK11288 74 ----------TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSI 143 (501)
T ss_pred ----------HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCH
Confidence 011234456665554444444444332 221 11 11 23456788888885 3678899999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||+||||++++..+||++++|++|+++..+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999999999864 5899999999999999999999999999998765
Q ss_pred C
Q 018938 257 P 257 (348)
Q Consensus 257 ~ 257 (348)
+
T Consensus 223 ~ 223 (501)
T PRK11288 223 D 223 (501)
T ss_pred C
Confidence 4
No 219
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-43 Score=316.79 Aligned_cols=196 Identities=24% Similarity=0.325 Sum_probs=158.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++|++++|+ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-- 69 (204)
T PRK13538 1 MLEARNLACERD---------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-- 69 (204)
T ss_pred CeEEEEEEEEEC---------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch--
Confidence 488999999994 357999999999999999999999999999999999999999999999997642110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~ 183 (348)
..+++.+++.++...+....+..+.+ +. ... ...+++.++++.+++. .++++.+||||||||++
T Consensus 70 ----------~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~ 139 (204)
T PRK13538 70 ----------DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVA 139 (204)
T ss_pred ----------HHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHH
Confidence 11233455554443333334444332 21 111 2334567789999985 46788999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
|||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++|||++++..+.+|++++
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999999999999864 4889999999999999988888776
No 220
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-43 Score=310.09 Aligned_cols=178 Identities=25% Similarity=0.383 Sum_probs=143.2
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 i~~~~l~~~~~---------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-- 69 (178)
T cd03229 1 LELKNVSKRYG---------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED-- 69 (178)
T ss_pred CEEEEEEEEEC---------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccch--
Confidence 46899999994 3579999999999999999999999999999999999999999999999975422100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK 190 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~ 190 (348)
....+++.++|.++....+...+..+... + .||||||||++|||||+.
T Consensus 70 -------~~~~~~~~i~~~~q~~~~~~~~t~~~~l~------------------~-------~lS~G~~qr~~la~al~~ 117 (178)
T cd03229 70 -------ELPPLRRRIGMVFQDFALFPHLTVLENIA------------------L-------GLSGGQQQRVALARALAM 117 (178)
T ss_pred -------hHHHHhhcEEEEecCCccCCCCCHHHhee------------------e-------cCCHHHHHHHHHHHHHHC
Confidence 00112334555544322222222222110 0 099999999999999999
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
+|++|||||||+|||+.++..++++|++++++.|.|+|++|||++++..+||++++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999876557999999999999999999999999884
No 221
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1e-43 Score=322.03 Aligned_cols=193 Identities=21% Similarity=0.317 Sum_probs=155.7
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
+.++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|......
T Consensus 23 l~~~~~~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---- 89 (224)
T cd03220 23 LGILGRKGEVG---------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---- 89 (224)
T ss_pred hhhhhhhhhcC---------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----
Confidence 77899999994 47899999999999999999999999999999999999999999999999753210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
.....+. ...++.+.+ +. ..+.. .++..++++.+++. .++++.+||||||||
T Consensus 90 ------------~~~~~~~-------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 150 (224)
T cd03220 90 ------------GLGGGFN-------PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKAR 150 (224)
T ss_pred ------------cccccCC-------CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence 0001111 112222211 11 01111 12355677788875 367789999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
++|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++++..+||++++|++|+++..|
T Consensus 151 v~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999998754 899999999999999999999999999998654
No 222
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.3e-43 Score=322.28 Aligned_cols=212 Identities=19% Similarity=0.232 Sum_probs=159.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCeeccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~~~~~~~ 107 (348)
+|+++||+++|+ ++++|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++....
T Consensus 1 ~i~~~nl~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~ 71 (248)
T PRK09580 1 MLSIKDLHVSVE---------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS 71 (248)
T ss_pred CeEEEEEEEEeC---------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCC
Confidence 488999999995 357999999999999999999999999999999999994 699999999997542110
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHH-------HhccCC---CC----HHHHHHHHHHcCCC---cCcc
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-------IFGVAG---ID----PQRRAELIKVLDID---LSWR 170 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~----~~~~~~~l~~l~l~---~~~~ 170 (348)
.. ...+..++|.++........+...+ ...... .. .+.+.++++.+++. .++.
T Consensus 72 ~~----------~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 141 (248)
T PRK09580 72 PE----------DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRS 141 (248)
T ss_pred HH----------HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccC
Confidence 00 0001223343333222111111110 000000 11 12345677777774 2445
Q ss_pred CC-CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEc
Q 018938 171 MH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVA 248 (348)
Q Consensus 171 ~~-~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~ 248 (348)
+. +|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|+|||++|||++++..+ ||++++|+
T Consensus 142 ~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~ 220 (248)
T PRK09580 142 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLY 220 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEE
Confidence 54 7999999999999999999999999999999999999999999999864 589999999999999987 89999999
Q ss_pred CCEEeeecChhHH
Q 018938 249 HGKLQLAMPMDKV 261 (348)
Q Consensus 249 ~G~i~~~g~~~~~ 261 (348)
+|+++..|+++.+
T Consensus 221 ~g~i~~~g~~~~~ 233 (248)
T PRK09580 221 QGRIVKSGDFTLV 233 (248)
T ss_pred CCeEEEeCCHHHH
Confidence 9999999887643
No 223
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-43 Score=304.79 Aligned_cols=162 Identities=23% Similarity=0.410 Sum_probs=138.1
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~---------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~-- 69 (163)
T cd03216 1 LELRGITKRFG---------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP-- 69 (163)
T ss_pred CEEEEEEEEEC---------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCH--
Confidence 47899999995 3579999999999999999999999999999999999999999999999875321000
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK 190 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~ 190 (348)
....++.++|. .+|||||+||++|||||+.
T Consensus 70 --------~~~~~~~i~~~------------------------------------------~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 70 --------RDARRAGIAMV------------------------------------------YQLSVGERQMVEIARALAR 99 (163)
T ss_pred --------HHHHhcCeEEE------------------------------------------EecCHHHHHHHHHHHHHhc
Confidence 00001112221 1199999999999999999
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
+|++|||||||++||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|++++
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999864 48999999999999999999999999999864
No 224
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.9e-43 Score=321.44 Aligned_cols=198 Identities=22% Similarity=0.244 Sum_probs=157.8
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC----CCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV----EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~----~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (348)
+|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.++... . ..++.++|+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~------------~~~~~i~~~ 67 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-S------------IRGRHIATI 67 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-h------------hhhheeEEE
Confidence 57899999999999999999999999999999999998 899999999764211 0 011234444
Q ss_pred CCCcc--ccccchHHHHH-hc--cCCC-C---HHHHHHHHHHcCCC-----cCccCCCCCHHHHHHHHHHHHHccCCcEE
Q 018938 130 GFEVP--IQMDVSAEKMI-FG--VAGI-D---PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVL 195 (348)
Q Consensus 130 ~~~~~--~~~~~~~~~~~-~~--~~~~-~---~~~~~~~l~~l~l~-----~~~~~~~LSgGqrQRv~lAraL~~~P~lL 195 (348)
+++.. +...++..+.+ +. .... . .+++.++++.+++. .++.+.+|||||||||+|||||+.+|++|
T Consensus 68 ~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vl 147 (230)
T TIGR02770 68 MQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFL 147 (230)
T ss_pred ecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 44321 22223333221 11 1111 1 23466788888885 35678999999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHh
Q 018938 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 196 lLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 264 (348)
||||||+|||+.++..+.++|++++++.|.|||++||+++++..+||++++|++|+++..++++++...
T Consensus 148 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 148 IADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999998765689999999999999999999999999999999999888653
No 225
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-43 Score=324.13 Aligned_cols=217 Identities=18% Similarity=0.203 Sum_probs=171.3
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCe
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGR 101 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~ 101 (348)
..+.+.+++++++|+ +.++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 5 ~~~~~~~~~~~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~ 75 (261)
T PRK14263 5 APIVMDCKLDKIFYG---------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQ 75 (261)
T ss_pred CCceEEEEeEEEEeC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCE
Confidence 346799999999994 46799999999999999999999999999999999999876 7999999998
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCC---HHHHHHHHHHcCCC------cCc
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGID---PQRRAELIKVLDID------LSW 169 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~---~~~~~~~l~~l~l~------~~~ 169 (348)
++..... . ...+++.++|+++...++ ..+..+ +.+.. .... .+++.++++.+++. .+.
T Consensus 76 ~i~~~~~-~--------~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~ 145 (261)
T PRK14263 76 DVYGKGV-D--------PVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV 145 (261)
T ss_pred ecccccc-c--------hHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence 6431100 0 012234466665543333 234433 32221 1111 23456778888763 135
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA- 248 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~- 248 (348)
++.+|||||+||++|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++||+++++..+||++++|+
T Consensus 146 ~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~ 223 (261)
T PRK14263 146 SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSV 223 (261)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEec
Confidence 678999999999999999999999999999999999999999999999984 3 6899999999999999999999995
Q ss_pred -------CCEEeeecChhHHHHh
Q 018938 249 -------HGKLQLAMPMDKVKEA 264 (348)
Q Consensus 249 -------~G~i~~~g~~~~~~~~ 264 (348)
+|++++.|+.+++.+.
T Consensus 224 ~~~~~~~~G~i~~~g~~~~~~~~ 246 (261)
T PRK14263 224 DISQGTRTGYLVEMGPTAQIFQN 246 (261)
T ss_pred ccccccCCceEEEeCCHHHHHhC
Confidence 8999999999988654
No 226
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.8e-43 Score=321.54 Aligned_cols=191 Identities=24% Similarity=0.284 Sum_probs=153.3
Q ss_pred eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP 134 (348)
Q Consensus 55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (348)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+++++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----------------~~~~v~q~~~ 64 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP----------------DRMVVFQNYS 64 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----------------hheEEecCcc
Confidence 578999999999999999999999999999999999999999999976422100 0123333333
Q ss_pred ccccchHHHHH-hc----cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCC
Q 018938 135 IQMDVSAEKMI-FG----VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 203 (348)
Q Consensus 135 ~~~~~~~~~~~-~~----~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsg 203 (348)
.+...+..+.+ +. ...... +++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 65 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 65 LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred cCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 33333443322 21 112221 2356788888886 3678899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 204 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 204 LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
||+.++..+.+.|.+++++.|+|||++|||++++..+||++++|++|+++..|+...+
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999999998766689999999999999999999999999999988866544
No 227
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.2e-44 Score=320.69 Aligned_cols=223 Identities=31% Similarity=0.519 Sum_probs=176.6
Q ss_pred eEEEeceEEEecCCC------C------CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE
Q 018938 30 TVEINALKFTYPGID------G------HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~------~------~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~ 97 (348)
++.++||+|.|.-.. | ++......++.||||+|++|++++++|||||||||++|+|+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 578888888884211 1 1111234689999999999999999999999999999999999999999999
Q ss_pred EcCeeccccccccccCcccccchhhhhhhhhcC-CCccccc------cchHHHHHhccCCC-CHHHHHHHHHHcCCC--c
Q 018938 98 VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG-FEVPIQM------DVSAEKMIFGVAGI-DPQRRAELIKVLDID--L 167 (348)
Q Consensus 98 i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~--~ 167 (348)
++|.+++... +.+-+.++++. +...+.. .+.....++..+.. -.++...+.+.++++ .
T Consensus 83 V~G~~Pf~~~------------~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~l 150 (325)
T COG4586 83 VNGKDPFRRR------------EEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL 150 (325)
T ss_pred ecCcCcchhH------------HHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhh
Confidence 9998765421 11223333321 1112222 22222233322211 134566788888887 6
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
.++++.||-|||.|+.||.||+++|+||+|||||-|||...+..+.++|++++++++.||+++||+++.+.++||||++|
T Consensus 151 k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I 230 (325)
T COG4586 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLI 230 (325)
T ss_pred hhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEeeecChhHHHHh
Q 018938 248 AHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~~~ 264 (348)
+.|+++++|+.+++.+.
T Consensus 231 ~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 231 DQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred eCCcEeecccHHHHHHH
Confidence 99999999999988764
No 228
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.8e-43 Score=319.35 Aligned_cols=208 Identities=27% Similarity=0.426 Sum_probs=162.8
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|+++.|+..+ +.+.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 2 l~~~~l~~~~~~~~-----~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~- 75 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-----LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEK- 75 (220)
T ss_pred EEEEEEEEEccCCC-----cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHh-
Confidence 78999999995310 125799999999999999999999999999999999999999999999999864321100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--C-CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--A-GID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
....+++.++|.++....+...+..+.+ +.. . ... ...+.++++.+++. .++.+.+||+||||
T Consensus 76 -------~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q 148 (220)
T TIGR02982 76 -------ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQ 148 (220)
T ss_pred -------HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH
Confidence 0001234456665554444434443322 111 1 112 13456788888885 36788999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
|++|||||+.+|++|||||||+|||+.++..+.++|+++.++.++|||++|||++.. .+||++++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999998766689999999999864 79999999999986
No 229
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.5e-43 Score=307.06 Aligned_cols=173 Identities=24% Similarity=0.386 Sum_probs=141.0
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ +...+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~-------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--- 70 (173)
T cd03246 1 LEVENVSFRYPG-------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD--- 70 (173)
T ss_pred CEEEEEEEEcCC-------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC---
Confidence 468999999953 2356999999999999999999999999999999999999999999999997542110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK 190 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~ 190 (348)
...+++.++|.+++..++. .+..+. + |||||+||++|||||+.
T Consensus 71 --------~~~~~~~i~~~~q~~~~~~-~tv~~~------------------l----------LS~G~~qrv~la~al~~ 113 (173)
T cd03246 71 --------PNELGDHVGYLPQDDELFS-GSIAEN------------------I----------LSGGQRQRLGLARALYG 113 (173)
T ss_pred --------HHHHHhheEEECCCCcccc-CcHHHH------------------C----------cCHHHHHHHHHHHHHhc
Confidence 0122344555544322111 111111 0 99999999999999999
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
+|++|||||||++||+.++..++++|+++.+ .|.|||++|||++++. +||++++|++|++
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 9999999999999999999999999999864 5899999999999985 7999999999974
No 230
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-43 Score=313.89 Aligned_cols=196 Identities=18% Similarity=0.220 Sum_probs=153.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeecccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFHD 106 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~~ 106 (348)
.+.++||+|.|+.. .+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 ~~~~~~~~~~~~~~-----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKG-----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccC-----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc
Confidence 68999999999642 135679999999999999999999999999999999999998 8999999999764321
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICM 186 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAr 186 (348)
. ...++.++|.+++...+..++..+.+.... . . ..++++.+|||||+||++|||
T Consensus 78 ~------------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-----~-------~--~~~~~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 78 A------------EKYPGEIIYVSEEDVHFPTLTVRETLDFAL-----R-------C--KGNEFVRGISGGERKRVSIAE 131 (202)
T ss_pred h------------hhhcceEEEEecccccCCCCcHHHHHhhhh-----h-------h--ccccchhhCCHHHHHHHHHHH
Confidence 0 112234555554443333444444321100 0 0 045678899999999999999
Q ss_pred HHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEE-EecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY-ATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 187 aL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvii-vtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||+.+|++|||||||++||+.++..++++|+++.++.+.|+|+ ++|+.+++..+||++++|++|+++..|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999987655666555 456678999999999999999998653
No 231
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-43 Score=354.89 Aligned_cols=212 Identities=22% Similarity=0.314 Sum_probs=169.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceEEEcCeeccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMVKVLGRSAFHDT 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i~i~G~~~~~~~ 107 (348)
+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++....
T Consensus 1 ~l~i~~l~~~~~---------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 1 LLEMKGIVKTFG---------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred CEEEEeEEEEeC---------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC
Confidence 478999999994 35799999999999999999999999999999999999886 7999999997642110
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----C--CC----HHHHHHHHHHcCCCc---CccCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----G--ID----PQRRAELIKVLDIDL---SWRMHK 173 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~--~~----~~~~~~~l~~l~l~~---~~~~~~ 173 (348)
. ....+..++|+++....+..++..+.+ +... . .. ..++.++++.+++.. ++++.+
T Consensus 72 ~----------~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 141 (500)
T TIGR02633 72 I----------RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD 141 (500)
T ss_pred H----------HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhh
Confidence 0 001123456665554444444444332 2211 0 11 134567888888852 356899
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||+||||++++..+||++++|++|+++
T Consensus 142 LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 142 YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence 999999999999999999999999999999999999999999999864 5899999999999999999999999999999
Q ss_pred eecChhHH
Q 018938 254 LAMPMDKV 261 (348)
Q Consensus 254 ~~g~~~~~ 261 (348)
..++++++
T Consensus 221 ~~~~~~~~ 228 (500)
T TIGR02633 221 ATKDMSTM 228 (500)
T ss_pred eecCcccC
Confidence 88877654
No 232
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-43 Score=330.50 Aligned_cols=216 Identities=20% Similarity=0.256 Sum_probs=168.7
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~ 102 (348)
.++|.++||+++|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 43 ~~~l~i~nl~~~~~---------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~ 113 (305)
T PRK14264 43 DAKLSVEDLDVYYG---------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD 113 (305)
T ss_pred CceEEEEEEEEEeC---------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 45799999999994 3579999999999999999999999999999999999985 589999999976
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhccC--------------CCC-----HHHHHHHHHH
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGVA--------------GID-----PQRRAELIKV 162 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~-----~~~~~~~l~~ 162 (348)
+..... ....+++.++|+++...++.. +..+ +.+... ... .+.+.++++.
T Consensus 114 i~~~~~---------~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (305)
T PRK14264 114 IYQDGV---------NLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQ 183 (305)
T ss_pred cccccc---------cHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHH
Confidence 432100 001223445666554333222 3332 221110 011 2235567777
Q ss_pred cCCC------cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938 163 LDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 236 (348)
Q Consensus 163 l~l~------~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 236 (348)
+++. .++++.+|||||+|||+|||||+.+|+||||||||+|||+.++..+.++|+++++ +.|||++||++++
T Consensus 184 ~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~ 261 (305)
T PRK14264 184 AALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQ 261 (305)
T ss_pred cCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHH
Confidence 7763 2567899999999999999999999999999999999999999999999999864 4799999999999
Q ss_pred hhhhCCEE-EEEcCCEEeeecChhHHHHh
Q 018938 237 LENWPSHI-VYVAHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 237 ~~~~~d~v-~~l~~G~i~~~g~~~~~~~~ 264 (348)
+..+||++ ++|++|++++.|+++++...
T Consensus 262 i~~~~d~i~~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 262 AARISDQTAVFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred HHHhcCEEEEEecCCEEEEeCCHHHHHhC
Confidence 99999997 57899999999998887653
No 233
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4e-43 Score=312.92 Aligned_cols=195 Identities=25% Similarity=0.328 Sum_probs=159.0
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||++.|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 l~i~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---- 67 (201)
T cd03231 1 LEADELTCERD---------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ---- 67 (201)
T ss_pred CEEEEEEEEeC---------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc----
Confidence 47899999994 36799999999999999999999999999999999999999999999999764211
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMG 187 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAra 187 (348)
...+++.++|.++........+..+.+ +.......+++.++++.+++. .++++.+||||||||++||||
T Consensus 68 --------~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 139 (201)
T cd03231 68 --------RDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARL 139 (201)
T ss_pred --------cHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHH
Confidence 012344566665544443344444433 221122345667888989886 367789999999999999999
Q ss_pred HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
|+.+|++|||||||+|||+.++..+.++|+++++ .|.|+|++|||......+|++++++
T Consensus 140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999999999999864 4899999999999999999999877
No 234
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=356.82 Aligned_cols=217 Identities=19% Similarity=0.256 Sum_probs=171.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-CCCceEEEcCeecccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-VEPEMVKVLGRSAFHD 106 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-~~~G~i~i~G~~~~~~ 106 (348)
.++|+++||+++|+.. +++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 257 ~~~l~~~~l~~~~~~~------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~ 330 (506)
T PRK13549 257 EVILEVRNLTAWDPVN------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIR 330 (506)
T ss_pred CceEEEecCccccccc------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCC
Confidence 4579999999999420 13569999999999999999999999999999999999998 4899999999764211
Q ss_pred ccccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-hc----cCC---CC----HHHHHHHHHHcCCC---cC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-FG----VAG---ID----PQRRAELIKVLDID---LS 168 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~----~~~---~~----~~~~~~~l~~l~l~---~~ 168 (348)
.. ....+..++|+++.. .....++..+.+ +. ... .+ .+++.++++.+++. .+
T Consensus 331 ~~----------~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 400 (506)
T PRK13549 331 NP----------QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPE 400 (506)
T ss_pred CH----------HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcc
Confidence 00 011223355554442 122233443322 11 111 11 13456788999884 36
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|+
T Consensus 401 ~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 401 LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMH 479 (506)
T ss_pred cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 78999999999999999999999999999999999999999999999999875 49999999999999999999999999
Q ss_pred CCEEeeecChhHH
Q 018938 249 HGKLQLAMPMDKV 261 (348)
Q Consensus 249 ~G~i~~~g~~~~~ 261 (348)
+|+++..++++++
T Consensus 480 ~G~i~~~~~~~~~ 492 (506)
T PRK13549 480 EGKLKGDLINHNL 492 (506)
T ss_pred CCEEEEEeccccC
Confidence 9999999888765
No 235
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=354.03 Aligned_cols=210 Identities=20% Similarity=0.335 Sum_probs=169.1
Q ss_pred EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccccc
Q 018938 33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112 (348)
Q Consensus 33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~ 112 (348)
++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....
T Consensus 1 ~~nl~~~~~---------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---- 67 (491)
T PRK10982 1 MSNISKSFP---------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSS---- 67 (491)
T ss_pred CCceEEEeC---------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCH----
Confidence 478999994 3579999999999999999999999999999999999999999999999986421110
Q ss_pred CcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CC--CC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AG--ID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~--~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
...+++.++|++++.......++.+.+ +.. .. .+ .+++.++++.+++. .++++.+|||||||
T Consensus 68 ------~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 141 (491)
T PRK10982 68 ------KEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQ 141 (491)
T ss_pred ------HHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence 011223455665554444444544432 221 11 11 12456788888885 46789999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||++++|++|+++..+++++
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 99999999999999999999999999999999999999864 58999999999999999999999999999999998877
Q ss_pred HH
Q 018938 261 VK 262 (348)
Q Consensus 261 ~~ 262 (348)
+.
T Consensus 221 ~~ 222 (491)
T PRK10982 221 LT 222 (491)
T ss_pred CC
Confidence 64
No 236
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.4e-43 Score=312.44 Aligned_cols=187 Identities=22% Similarity=0.266 Sum_probs=149.3
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeecccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~~~~ 108 (348)
|+++|++++|+ ++.+|+++||++++||+++|+|+||||||||+++|+|+ +.|++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVG---------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeC---------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCH
Confidence 46899999994 35799999999999999999999999999999999999 47999999999986432110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL 188 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL 188 (348)
. ...+..++|.++....+...+..+ .+ .....+|||||+||++|||||
T Consensus 72 ~----------~~~~~~i~~v~q~~~~~~~~~~~~---------------~l-------~~~~~~LS~G~~qrv~laral 119 (200)
T cd03217 72 E----------ERARLGIFLAFQYPPEIPGVKNAD---------------FL-------RYVNEGFSGGEKKRNEILQLL 119 (200)
T ss_pred H----------HHhhCcEEEeecChhhccCccHHH---------------HH-------hhccccCCHHHHHHHHHHHHH
Confidence 0 001123455544322222222211 11 122368999999999999999
Q ss_pred ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh-hCCEEEEEcCCEEeeecChh
Q 018938 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN-WPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~-~~d~v~~l~~G~i~~~g~~~ 259 (348)
+.+|++|||||||++||+.++..++++|+++.+ .+.|||++||+++++.. +||++++|++|++++.++.+
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 999999999999999999999999999999864 48999999999999988 79999999999999988543
No 237
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-43 Score=330.37 Aligned_cols=236 Identities=21% Similarity=0.298 Sum_probs=188.2
Q ss_pred CCCeEEEeceEEEecCCCC--CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938 27 SKPTVEINALKFTYPGIDG--HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~--~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~ 104 (348)
..+.|+.++|++.|+-..| ++......++++|||++.+|+.+||+|+||||||||-.+|.+++.+ .|.|.+.|+++.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s-~G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc-CceEEECCcccc
Confidence 4568999999999975432 1111235699999999999999999999999999999999999865 499999998753
Q ss_pred ccccccccCcccccchhhhhhhhhcCCC--ccccccchHHHHHh-cc----CCCC----HHHHHHHHHHcCCC---cCcc
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFE--VPIQMDVSAEKMIF-GV----AGID----PQRRAELIKVLDID---LSWR 170 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~----~~~~----~~~~~~~l~~l~l~---~~~~ 170 (348)
.... ... .-+++++..++|+ ..+.+.+++.+++. ++ +..+ .+++.++++.+|++ .+++
T Consensus 352 ~~~~----~~m----rplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY 423 (534)
T COG4172 352 GLSR----KEM----RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY 423 (534)
T ss_pred ccCh----hhh----hhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC
Confidence 2211 000 1133444433332 33455666666542 21 1222 23566778888987 4789
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
|+++|||||||++|||||+.+|++++||||||+||..-+.+++++|+++.+++|.+.+|||||+..+..+||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecChhHHHHhhhhhhHH
Q 018938 251 KLQLAMPMDKVKEASKLSLMR 271 (348)
Q Consensus 251 ~i~~~g~~~~~~~~~~~~~~~ 271 (348)
+|++.|+.+++++++...+.+
T Consensus 504 kiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 504 KIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EEeeeCCHHHHhcCCCcHHHH
Confidence 999999999999988766543
No 238
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=5.2e-43 Score=317.51 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=157.2
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++|++++|++. ++.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus 9 ~~~l~~~~l~~~~~~~------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC
Confidence 4689999999999631 1246999999999999999999999999999999999999999999999997542110
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHH---------HHHHHHHHc--CCC--cCccCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQ---------RRAELIKVL--DID--LSWRMHK 173 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~~l--~l~--~~~~~~~ 173 (348)
...+++.++|+++...++. .+..+.+ +........ ...++++.+ ++. .+.++.+
T Consensus 83 -----------~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~ 150 (226)
T cd03248 83 -----------HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ 150 (226)
T ss_pred -----------HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc
Confidence 0112344555554433322 2333322 222111111 123456666 554 3567899
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++.. ||++++|++|++
T Consensus 151 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 999999999999999999999999999999999999999999999853 5899999999999964 999999999974
No 239
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=322.89 Aligned_cols=219 Identities=20% Similarity=0.235 Sum_probs=169.4
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~ 102 (348)
..+|+++||+++|+ ++++|+++||+|++||+++|+|+||||||||+++|+|++.| ++|+|.++|..
T Consensus 14 ~~~l~~~~l~~~~~---------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~ 84 (265)
T PRK14252 14 QQKSEVNKLNFYYG---------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84 (265)
T ss_pred CceEEEEEEEEEEC---------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcc
Confidence 45799999999994 35799999999999999999999999999999999999875 68999999864
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCC-----HHHHHHHHHHcCCC------cC
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGID-----PQRRAELIKVLDID------LS 168 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-----~~~~~~~l~~l~l~------~~ 168 (348)
...... .. ....++..++|.++....+.. +..+ +.+.. .+.. .+...++++.+++. .+
T Consensus 85 ~~~~~~-----~~--~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 85 VNILSP-----EV--DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred cccccc-----cc--CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 321000 00 001233445666554433333 3333 32221 1111 13445666666652 25
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+.+.+|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||+|||+++++..+||++++|+
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~ 234 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMY 234 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 67899999999999999999999999999999999999999999999999853 6899999999999999999999999
Q ss_pred CCEEeeecChhHHHHhh
Q 018938 249 HGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~~~ 265 (348)
+|++++.|+.+++....
T Consensus 235 ~G~i~~~g~~~~~~~~~ 251 (265)
T PRK14252 235 MGELIEFGATDTIFIKP 251 (265)
T ss_pred CCEEEEeCCHHHHHhCC
Confidence 99999999988876543
No 240
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-43 Score=340.64 Aligned_cols=214 Identities=22% Similarity=0.377 Sum_probs=182.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.++++||+|+|++ ...++|+|+||++++||.++|+|++|||||||+++|+|.+.|++|+|.++|.++..-
T Consensus 336 ~l~~~~vsF~y~~-------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l--- 405 (573)
T COG4987 336 ALELRNVSFTYPG-------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL--- 405 (573)
T ss_pred eeeeccceeecCC-------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC---
Confidence 6999999999975 345899999999999999999999999999999999999999999999999765321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCc-------------CccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL-------------SWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------------~~~~~~LSg 176 (348)
-.+.++..+++..|...++.....+++....+..+.+...++++.+|+.. +.....|||
T Consensus 406 --------~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSG 477 (573)
T COG4987 406 --------DEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSG 477 (573)
T ss_pred --------ChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCc
Confidence 12346677778877766665555556666666677788888888888631 123467999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||+||++|||+|+++.+++||||||.|||+.+.+++++.|.+-+ .|+|+|||||++..++. ||+|++|++|+++++|
T Consensus 478 GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G 554 (573)
T COG4987 478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEG 554 (573)
T ss_pred hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccccHhh-cCEEEEEECCeeeecC
Confidence 99999999999999999999999999999999999999999865 38999999999999975 8999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
++.++..+
T Consensus 555 ~~~~Ll~~ 562 (573)
T COG4987 555 THAELLAN 562 (573)
T ss_pred CHHhhhcc
Confidence 99998763
No 241
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=320.00 Aligned_cols=216 Identities=19% Similarity=0.259 Sum_probs=169.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~~~ 104 (348)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.. |++|+|.++|.++.
T Consensus 3 ~l~~~~v~~~~~---------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 73 (250)
T PRK14266 3 RIEVENLNTYFD---------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73 (250)
T ss_pred EEEEEeEEEEeC---------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence 589999999994 3579999999999999999999999999999999999864 37899999997643
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CC-CCH----HHHHHHHHHcCCC------cCccC
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG-IDP----QRRAELIKVLDID------LSWRM 171 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~l~~l~l~------~~~~~ 171 (348)
.... . ....++.++|++++...+.....+++.+.. .. .+. .++.++++.+++. .++.+
T Consensus 74 ~~~~-----~----~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~ 144 (250)
T PRK14266 74 DPAV-----D----VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSA 144 (250)
T ss_pred cccc-----c----HHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCc
Confidence 2100 0 012334566665554433332223332221 11 111 2345667777762 25678
Q ss_pred CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||+++++..+||++++|++|+
T Consensus 145 ~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~ 222 (250)
T PRK14266 145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGE 222 (250)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCe
Confidence 9999999999999999999999999999999999999999999999985 3 7899999999999999999999999999
Q ss_pred EeeecChhHHHHhh
Q 018938 252 LQLAMPMDKVKEAS 265 (348)
Q Consensus 252 i~~~g~~~~~~~~~ 265 (348)
+++.|+++++...+
T Consensus 223 i~~~g~~~~~~~~~ 236 (250)
T PRK14266 223 IIESGLTDQIFINP 236 (250)
T ss_pred EEEeCCHHHHHhCC
Confidence 99999998886543
No 242
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.2e-43 Score=354.76 Aligned_cols=224 Identities=17% Similarity=0.291 Sum_probs=170.4
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCe-------
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGR------- 101 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~------- 101 (348)
|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|++ .|++|+|.++|.
T Consensus 1 l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKFD---------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEEC---------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccc
Confidence 47899999994 357999999999999999999999999999999999996 699999998731
Q ss_pred ---------ecc-ccccccc-cCcc-ccc---chhhhhhhhhcCCC-ccccccchHH-HHHhcc--CCCC----HHHHHH
Q 018938 102 ---------SAF-HDTALTS-SGDL-SYL---GGEWRREVAFAGFE-VPIQMDVSAE-KMIFGV--AGID----PQRRAE 158 (348)
Q Consensus 102 ---------~~~-~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~----~~~~~~ 158 (348)
+.. .+..... .... ... ...+++.++|+++. ...+...+.. ++.+.. .+.. .+++.+
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 100 0000000 0000 000 01123456666554 2233333433 332221 1222 234567
Q ss_pred HHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938 159 LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 236 (348)
Q Consensus 159 ~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 236 (348)
+++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+||||+++
T Consensus 152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 88889986 3678999999999999999999999999999999999999999999999999977679999999999999
Q ss_pred hhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 237 LENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 237 ~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
+..+||++++|++|+++..|+++++..
T Consensus 232 ~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 232 IEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 999999999999999999898887754
No 243
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.4e-43 Score=317.51 Aligned_cols=207 Identities=22% Similarity=0.334 Sum_probs=162.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeecccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFHD 106 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~~ 106 (348)
.+.++|++++|++.+ +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~- 76 (226)
T cd03234 3 VLPWWDVGLKAKNWN-----KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP- 76 (226)
T ss_pred cceeecceeeeecCc-----cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh-
Confidence 467999999996410 13689999999999999999999999999999999999998 899999999975421
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc----c-CCCCH----HHHHH-HHHHcCCC--cCccCCC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG----V-AGIDP----QRRAE-LIKVLDID--LSWRMHK 173 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~-~~~~~----~~~~~-~l~~l~l~--~~~~~~~ 173 (348)
..+++.++|.++....+..++..+.+ +. . ..... ....+ .++.+++. .++.+.+
T Consensus 77 -------------~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (226)
T cd03234 77 -------------DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG 143 (226)
T ss_pred -------------HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccC
Confidence 01233455555544333333443322 11 1 11111 12233 67777765 3567899
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhhhhCCEEEEEcCCEE
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i 252 (348)
|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++||++ +++..+||++++|++|++
T Consensus 144 LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 222 (226)
T cd03234 144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222 (226)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999865 489999999999 589999999999999999
Q ss_pred eeec
Q 018938 253 QLAM 256 (348)
Q Consensus 253 ~~~g 256 (348)
++.|
T Consensus 223 ~~~g 226 (226)
T cd03234 223 VYSG 226 (226)
T ss_pred EecC
Confidence 8754
No 244
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=354.74 Aligned_cols=209 Identities=15% Similarity=0.249 Sum_probs=166.9
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 263 ~~~l~~~~l~~~~~-----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 263 ETVFEVRNVTSRDR-----------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331 (510)
T ss_pred CcEEEEeCccccCC-----------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCC
Confidence 35899999998762 3899999999999999999999999999999999999999999999997642110
Q ss_pred cccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-hccC----------CC-C----HHHHHHHHHHcCCC--
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-FGVA----------GI-D----PQRRAELIKVLDID-- 166 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~----------~~-~----~~~~~~~l~~l~l~-- 166 (348)
. ....++.++|+++.. .+...+++.+.+ +... +. . ..++.++++.+++.
T Consensus 332 ~----------~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 401 (510)
T PRK09700 332 P----------LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCH 401 (510)
T ss_pred H----------HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCC
Confidence 0 011223456665542 233334444332 2110 00 1 12356788889984
Q ss_pred -cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938 167 -LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 245 (348)
Q Consensus 167 -~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~ 245 (348)
.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||+++
T Consensus 402 ~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~ 480 (510)
T PRK09700 402 SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIA 480 (510)
T ss_pred CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEE
Confidence 3678999999999999999999999999999999999999999999999999875 59999999999999999999999
Q ss_pred EEcCCEEeeecCh
Q 018938 246 YVAHGKLQLAMPM 258 (348)
Q Consensus 246 ~l~~G~i~~~g~~ 258 (348)
+|++|+++..++.
T Consensus 481 ~l~~G~i~~~~~~ 493 (510)
T PRK09700 481 VFCEGRLTQILTN 493 (510)
T ss_pred EEECCEEEEEecC
Confidence 9999999987765
No 245
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-43 Score=300.33 Aligned_cols=208 Identities=24% Similarity=0.402 Sum_probs=170.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
+++.+++++.+|++ ....+|+|+|++|.+||.++++|||||||||||++++|+..|..|+|.++|..+.....
T Consensus 2 ~~l~~~~~sl~y~g-------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga 74 (259)
T COG4525 2 CMLNVSHLSLSYEG-------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA 74 (259)
T ss_pred ceeehhheEEecCC-------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc
Confidence 46889999999964 12459999999999999999999999999999999999999999999999986532211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchH-HHHHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
+ + +.++|+..+.+++++ ++..+++ .+..+ +.+.+.+..+|+. .++++.+||||||
T Consensus 75 -----e---------r--gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmr 138 (259)
T COG4525 75 -----E---------R--GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMR 138 (259)
T ss_pred -----c---------c--eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHH
Confidence 1 1 222234444444443 3444543 34443 3455677888885 4678999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecC
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMP 257 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~ 257 (348)
|||.|||||+.+|++|+||||+++||.-+++.+.++|.++.++.|+.+++||||++++.-+++++++|+. |+|+..-+
T Consensus 139 QRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 139 QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred HHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984 79988766
Q ss_pred hh
Q 018938 258 MD 259 (348)
Q Consensus 258 ~~ 259 (348)
++
T Consensus 219 ~d 220 (259)
T COG4525 219 LD 220 (259)
T ss_pred CC
Confidence 65
No 246
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.9e-43 Score=307.13 Aligned_cols=177 Identities=21% Similarity=0.346 Sum_probs=143.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++|++++| +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 3 ~~l~~~~l~~~~-------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 3 PVLEVRGLSVKG-------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSP 69 (182)
T ss_pred cEEEEeccEEEe-------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCH
Confidence 479999999987 7999999999999999999999999999999999999999999999976422110
Q ss_pred ccccCcccccchhhhhhhhhcCCCc---cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQIC 185 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lA 185 (348)
....++.++|.+++. .+....+..+.+... . .||||||||++||
T Consensus 70 ----------~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~------------~-----------~LS~G~~qrl~la 116 (182)
T cd03215 70 ----------RDAIRAGIAYVPEDRKREGLVLDLSVAENIALS------------S-----------LLSGGNQQKVVLA 116 (182)
T ss_pred ----------HHHHhCCeEEecCCcccCcccCCCcHHHHHHHH------------h-----------hcCHHHHHHHHHH
Confidence 001233455554432 122222332221100 0 0999999999999
Q ss_pred HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
|||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++||+++++..+||++++|++|++
T Consensus 117 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 117 RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999865 489999999999999999999999999974
No 247
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=8.4e-43 Score=320.68 Aligned_cols=197 Identities=23% Similarity=0.344 Sum_probs=157.1
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV 133 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (348)
+|+++||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|.++.... ...++..++|+++..
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~-----------~~~~~~~i~~v~q~~ 78 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWS-----------AAELARHRAYLSQQQ 78 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCC-----------HHHHhhheEEecccC
Confidence 7999999999999999999999999999999999985 5999999998643211 011223355655443
Q ss_pred cccccchHHHHH-hccC-CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHcc-------CCcEEEee
Q 018938 134 PIQMDVSAEKMI-FGVA-GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK-------PFKVLLLD 198 (348)
Q Consensus 134 ~~~~~~~~~~~~-~~~~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~-------~P~lLlLD 198 (348)
......+..+++ +... ... .+++.++++.+++. .++++.+||||||||++|||||+. +|++||||
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 79 TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred ccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 333334444332 2211 111 23456788888885 367899999999999999999997 67999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 199 EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
|||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|+++..|+.+++..
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 99999999999999999999865 48999999999999999999999999999999998877653
No 248
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-43 Score=342.32 Aligned_cols=214 Identities=24% Similarity=0.385 Sum_probs=181.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.++++||++.|+. ++++++|+||++++|+.++|+|+||||||||+++|+|+.+|+.|+|.++|.+...-
T Consensus 320 ei~~~~l~~~y~~--------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l--- 388 (559)
T COG4988 320 EISLENLSFRYPD--------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL--- 388 (559)
T ss_pred eeeecceEEecCC--------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccccc---
Confidence 3555699999974 34899999999999999999999999999999999999999999999999764221
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--------cCc----cCCCCCHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--------LSW----RMHKVSDG 177 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--------~~~----~~~~LSgG 177 (348)
....|+++++|+++++.++.....+++.++....+++.+.++++..++. .+. ....||||
T Consensus 389 --------~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgG 460 (559)
T COG4988 389 --------SPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGG 460 (559)
T ss_pred --------CHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHH
Confidence 1246888999998887777766667777766666677777777776542 122 23459999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|+|||+|||||+++++++||||||++||.++...+.+.|.++.+ ++|||++||++..+.. ||+|++|++|++++.|.
T Consensus 461 Q~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~ 537 (559)
T COG4988 461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGT 537 (559)
T ss_pred HHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCceeccCC
Confidence 99999999999999999999999999999999999999999875 5899999999999876 89999999999999999
Q ss_pred hhHHHHhh
Q 018938 258 MDKVKEAS 265 (348)
Q Consensus 258 ~~~~~~~~ 265 (348)
.+++.++.
T Consensus 538 ~~~L~~~~ 545 (559)
T COG4988 538 HEELSEKQ 545 (559)
T ss_pred HHHHhhcC
Confidence 99987654
No 249
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6e-43 Score=305.97 Aligned_cols=178 Identities=24% Similarity=0.424 Sum_probs=145.3
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+...
T Consensus 1 i~~~~~~~~~~~-------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~---- 69 (178)
T cd03247 1 LSINNVSFSYPE-------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL---- 69 (178)
T ss_pred CEEEEEEEEeCC-------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH----
Confidence 478999999953 123699999999999999999999999999999999999999999999999753210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK 190 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~ 190 (348)
...+++.++|+++...++. .+..+. + +.+|||||+||++|||||+.
T Consensus 70 --------~~~~~~~i~~~~q~~~~~~-~tv~~~---------------i----------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 70 --------EKALSSLISVLNQRPYLFD-TTLRNN---------------L----------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred --------HHHHHhhEEEEccCCeeec-ccHHHh---------------h----------cccCCHHHHHHHHHHHHHhc
Confidence 1123344566544332211 111111 0 67999999999999999999
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
+|++|||||||++||+.++..+++.|.++. + +.|||++||+++++. .||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 999999999999999999999999999984 3 799999999999996 69999999999998653
No 250
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.1e-43 Score=313.63 Aligned_cols=197 Identities=21% Similarity=0.361 Sum_probs=152.9
Q ss_pred EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccccc
Q 018938 33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112 (348)
Q Consensus 33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~ 112 (348)
++||++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 1 i~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~--- 68 (206)
T TIGR03608 1 LKNISKKFG---------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK--- 68 (206)
T ss_pred CcceEEEEC---------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh---
Confidence 479999994 35799999999999999999999999999999999999999999999999864210000
Q ss_pred CcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~ 183 (348)
. .....++.++|+++....+...+..+.+ +.. .+.. .+++.++++.+++. .++++.+|||||+||++
T Consensus 69 -~---~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~ 144 (206)
T TIGR03608 69 -K---ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVA 144 (206)
T ss_pred -h---HHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHH
Confidence 0 0001233455655444333334443322 211 1111 23456788888885 36788999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
|||||+.+|++|||||||+|||+.++..+.++|+++.++ |.|||++||+++++ .+||++++|
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999999999999999999999999998754 89999999999976 589999875
No 251
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.1e-43 Score=308.98 Aligned_cols=188 Identities=21% Similarity=0.371 Sum_probs=149.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCeeccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~~~~~~~ 107 (348)
.|+++||+++|++..+ ...+++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...
T Consensus 3 ~l~~~~ls~~~~~~~~---~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~- 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPS---KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR- 78 (194)
T ss_pred EEEEEeeEEEEecCCC---cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH-
Confidence 5899999999952000 00257999999999999999999999999999999999999 99999999999864210
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG 187 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra 187 (348)
.+++.++|.++....+...+..+.+. +... ..+|||||+||++||||
T Consensus 79 -------------~~~~~i~~~~q~~~~~~~~t~~~~i~------------~~~~--------~~~LS~G~~qrv~lara 125 (194)
T cd03213 79 -------------SFRKIIGYVPQDDILHPTLTVRETLM------------FAAK--------LRGLSGGERKRVSIALE 125 (194)
T ss_pred -------------hhhheEEEccCcccCCCCCcHHHHHH------------HHHH--------hccCCHHHHHHHHHHHH
Confidence 12334555544433333333332221 0000 11899999999999999
Q ss_pred HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcCCEEeee
Q 018938 188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~ 255 (348)
|+.+|++|||||||++||+.++..+.++|+++.+ .|.|||++|||++ ++..+||++++|++|++++.
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 9999999999999999999999999999999865 4899999999996 78889999999999999764
No 252
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-42 Score=309.58 Aligned_cols=194 Identities=25% Similarity=0.336 Sum_probs=156.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+... .
T Consensus 2 ~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-- 69 (207)
T PRK13539 2 MLEGEDLACVRG---------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-- 69 (207)
T ss_pred EEEEEeEEEEEC---------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h--
Confidence 689999999994 3579999999999999999999999999999999999999999999999975310 0
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQI 184 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l 184 (348)
.++..++|++++.......+..+.+ +. ........+.++++.+++. .+.++.+||||||||++|
T Consensus 70 -----------~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 138 (207)
T PRK13539 70 -----------DVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVAL 138 (207)
T ss_pred -----------hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHH
Confidence 0233455554443333334443332 11 1122344567888989885 366789999999999999
Q ss_pred HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||+++++.. |+++.+..
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999999999999999999999999999999865 48999999999999986 88887743
No 253
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.5e-42 Score=318.13 Aligned_cols=214 Identities=14% Similarity=0.169 Sum_probs=163.3
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
...|+++|++++|+. ....+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus 17 ~~~i~~~~l~~~~~~-------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYEN-------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCC-------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC
Confidence 357999999999953 1257999999999999999999999999999999999999999999999998643211
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHH---------HHc--CCC--cCccCCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELI---------KVL--DID--LSWRMHKV 174 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~l--~l~--~~~~~~~L 174 (348)
. ..+++.++|+++...++. .+..+..............+++ +.+ +++ .+..+.+|
T Consensus 90 ~-----------~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~L 157 (257)
T cd03288 90 L-----------HTLRSRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENF 157 (257)
T ss_pred H-----------HHHhhhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcC
Confidence 0 122344556554433322 2333222111111122222222 222 222 23456899
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||+||++|||||+.+|++|||||||+|||+.++..++++++++. .+.|||++||+++.+.. ||++++|++|++++
T Consensus 158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~ 234 (257)
T cd03288 158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVSTILD-ADLVLVLSRGILVE 234 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHHHHh-CCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 38999999999999986 99999999999999
Q ss_pred ecChhHHHH
Q 018938 255 AMPMDKVKE 263 (348)
Q Consensus 255 ~g~~~~~~~ 263 (348)
.|+++++.+
T Consensus 235 ~g~~~~~~~ 243 (257)
T cd03288 235 CDTPENLLA 243 (257)
T ss_pred eCCHHHHHh
Confidence 999888764
No 254
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.1e-42 Score=360.28 Aligned_cols=211 Identities=21% Similarity=0.285 Sum_probs=176.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+|+|++ .++++|+|+||+|++||.++|+|+||||||||+|+|+|++.|++|+|.++|.++..-
T Consensus 451 ~I~~~nvsf~Y~~-------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~--- 520 (686)
T TIGR03797 451 AIEVDRVTFRYRP-------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL--- 520 (686)
T ss_pred eEEEEEEEEEcCC-------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC---
Confidence 5999999999963 246799999999999999999999999999999999999999999999999875321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg 176 (348)
....+++.+++++|+..++.....+++.++.+ .+.++..++++..++. .+ .....|||
T Consensus 521 --------~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 521 --------DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred --------CHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 12346778889888777665544555555544 5666677777776652 11 22357999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+++|++||||||||+||+.+.+.+.+.|+++ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999764 5799999999998865 9999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++.+.
T Consensus 667 ~~~~Ll~~ 674 (686)
T TIGR03797 667 TYDELMAR 674 (686)
T ss_pred CHHHHHhC
Confidence 99988753
No 255
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-43 Score=348.31 Aligned_cols=217 Identities=21% Similarity=0.330 Sum_probs=184.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
-.|+++||+|.|+.. .+.++|+|+||+|+|||++|||||||+||||+.++|..++.|++|+|.+||.++.+-
T Consensus 464 G~IeF~~VsFaYP~R------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~-- 535 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI-- 535 (716)
T ss_pred ceEEEEEeeeecCCC------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc--
Confidence 369999999999863 357899999999999999999999999999999999999999999999999976432
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-------CC--c----CccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-------ID--L----SWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~--~----~~~~~~LS 175 (348)
....+++.++++.|++.++.....+++.++....+.+++..+.+.-+ ++ . ..+..+||
T Consensus 536 ---------~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 536 ---------NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ---------CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 12346788999998888777766778888877666665554443322 11 1 23456899
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||+||||||+.+|.||||||.||+||.++...+.+.|.+..+ ++|||+|.|.+..+++ ||+|+++++|++++.
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEM 683 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccEEEEEcCCeEEec
Confidence 9999999999999999999999999999999999999999998764 5899999999999975 999999999999999
Q ss_pred cChhHHHHhh
Q 018938 256 MPMDKVKEAS 265 (348)
Q Consensus 256 g~~~~~~~~~ 265 (348)
|+.+++.+.+
T Consensus 684 G~h~eLl~~~ 693 (716)
T KOG0058|consen 684 GTHDELLSKP 693 (716)
T ss_pred ccHHHHhhCc
Confidence 9999988754
No 256
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2e-42 Score=354.70 Aligned_cols=212 Identities=24% Similarity=0.352 Sum_probs=176.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||++.|.+ ++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++|.++..-
T Consensus 349 ~i~~~~vsf~~~~--------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~--- 416 (588)
T PRK11174 349 TIEAEDLEILSPD--------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL--- 416 (588)
T ss_pred eEEEEeeEEeccC--------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccC---
Confidence 5999999987742 367999999999999999999999999999999999999 9999999999865321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg 176 (348)
....+++.++|++|++.++.....+++.++.+..+.++..++++..++. .+ .....|||
T Consensus 417 --------~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSG 488 (588)
T PRK11174 417 --------DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488 (588)
T ss_pred --------CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCH
Confidence 1234677889998887766655555665654555666666666655431 12 23467999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+++|++||||||||+||+++.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHH-hCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999874 4789999999999886 59999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++.+.
T Consensus 566 ~~~eL~~~ 573 (588)
T PRK11174 566 DYAELSQA 573 (588)
T ss_pred CHHHHHhc
Confidence 99988754
No 257
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.7e-43 Score=350.91 Aligned_cols=216 Identities=19% Similarity=0.219 Sum_probs=168.6
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-CCceEEEcCeecccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-EPEMVKVLGRSAFHD 106 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-~~G~i~i~G~~~~~~ 106 (348)
.++|+++|++++|++. ++..+|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 255 ~~~l~~~~l~~~~~~~------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 255 DVILEARNLTCWDVIN------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR 328 (500)
T ss_pred CceEEEeCCccccccc------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC
Confidence 3479999999999420 135699999999999999999999999999999999999985 799999999764211
Q ss_pred ccccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-hc----cC---CCC----HHHHHHHHHHcCCC---cC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-FG----VA---GID----PQRRAELIKVLDID---LS 168 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~----~~---~~~----~~~~~~~l~~l~l~---~~ 168 (348)
.. ....++.++|+++.. .....++..+.+ +. .. ... ..++.++++.+++. .+
T Consensus 329 ~~----------~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 398 (500)
T TIGR02633 329 NP----------AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPF 398 (500)
T ss_pred CH----------HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCcc
Confidence 00 011233455554442 122333333322 11 10 111 13456788889884 36
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|+
T Consensus 399 ~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~ 477 (500)
T TIGR02633 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIG 477 (500)
T ss_pred CccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 78999999999999999999999999999999999999999999999999875 48999999999999999999999999
Q ss_pred CCEEeeecChhH
Q 018938 249 HGKLQLAMPMDK 260 (348)
Q Consensus 249 ~G~i~~~g~~~~ 260 (348)
+|+++...+.++
T Consensus 478 ~G~i~~~~~~~~ 489 (500)
T TIGR02633 478 EGKLKGDFVNHA 489 (500)
T ss_pred CCEEEEEEcccc
Confidence 999998776554
No 258
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.3e-42 Score=361.31 Aligned_cols=213 Identities=25% Similarity=0.312 Sum_probs=176.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|++ .++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++..-
T Consensus 476 ~~I~~~~vsf~y~~-------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~-- 546 (710)
T TIGR03796 476 GYVELRNITFGYSP-------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEI-- 546 (710)
T ss_pred CeEEEEEEEEecCC-------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHC--
Confidence 35999999999964 246799999999999999999999999999999999999999999999999865321
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LS 175 (348)
....+++.+++++|+..++.....+++.++.+..+.++..++++..++. . ......||
T Consensus 547 ---------~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 547 ---------PREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred ---------CHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 1234677888988877666554445554443445566666666665542 1 12346799
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+++|++||||||||+||+.+...+.+.|++ .++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQR 692 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999975 37999999999998865 999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+.+++.+.
T Consensus 693 G~~~~Ll~~ 701 (710)
T TIGR03796 693 GTHEELWAV 701 (710)
T ss_pred cCHHHHHHc
Confidence 999998753
No 259
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-42 Score=305.86 Aligned_cols=186 Identities=25% Similarity=0.359 Sum_probs=148.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCeeccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~~~~~~~ 107 (348)
.|+++|+++.|++.. +++++|+++||+|++||+++|+||||||||||+++|+|+. .|++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~--- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKG-----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD--- 74 (192)
T ss_pred EEEEeeeEEEecCCC-----CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---
Confidence 689999999995310 1257999999999999999999999999999999999986 479999999997542
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG 187 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra 187 (348)
..+++.++|.++....+...+..+++.. ... + .+|||||+|||+||||
T Consensus 75 ------------~~~~~~i~~~~q~~~~~~~~tv~~~l~~---------~~~---~--------~~LSgGe~qrv~la~a 122 (192)
T cd03232 75 ------------KNFQRSTGYVEQQDVHSPNLTVREALRF---------SAL---L--------RGLSVEQRKRLTIGVE 122 (192)
T ss_pred ------------HHhhhceEEecccCccccCCcHHHHHHH---------HHH---H--------hcCCHHHhHHHHHHHH
Confidence 1123345555444333333343333210 000 0 1899999999999999
Q ss_pred HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcC-CEEeeec
Q 018938 188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAH-GKLQLAM 256 (348)
Q Consensus 188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g 256 (348)
|+.+|++|||||||++||+.++..+++.|+++.+ .|.|||++||+++ .+..+||++++|++ |++++.|
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999864 5899999999998 47889999999999 9998754
No 260
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=288.75 Aligned_cols=219 Identities=23% Similarity=0.348 Sum_probs=181.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|.++++++.|+ ...+|-||+|+.++||.+.++||||||||||+|.+.-+..|.+|+..+.|........
T Consensus 2 sirv~~in~~yg---------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~- 71 (242)
T COG4161 2 SIQLNGINCFYG---------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT- 71 (242)
T ss_pred ceEEcccccccc---------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccC-
Confidence 489999999994 5789999999999999999999999999999999999999999999988764321111
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHh-c---cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
. . ......+++.+++++++..+++.+++.+.+. . ..+.++ .++.++++.+.+. .++.|-.|||||+
T Consensus 72 ~--~--~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqq 147 (242)
T COG4161 72 P--S--DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQ 147 (242)
T ss_pred c--c--HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchh
Confidence 0 0 1122356788898888777777777654432 1 122232 3456788888875 4788999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|++||||++|||+-..++.++|+++. +.|.|-++|||..+.+.+.+.+|+.|++|+|++.|+..
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 99999999999999999999999999999999999999986 56999999999999999999999999999999999987
Q ss_pred HHHH
Q 018938 260 KVKE 263 (348)
Q Consensus 260 ~~~~ 263 (348)
-+..
T Consensus 227 ~ft~ 230 (242)
T COG4161 227 CFTE 230 (242)
T ss_pred hccC
Confidence 6653
No 261
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-42 Score=317.56 Aligned_cols=210 Identities=20% Similarity=0.274 Sum_probs=163.0
Q ss_pred eEEEeceEEEecCCCC-----------CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE
Q 018938 30 TVEINALKFTYPGIDG-----------HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV 98 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~-----------~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i 98 (348)
.|+++||++.|..... ....+.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5899999999965211 00123467999999999999999999999999999999999999999999999
Q ss_pred cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCCCH----HHHHHHHHHcCCC--cCc
Q 018938 99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGIDP----QRRAELIKVLDID--LSW 169 (348)
Q Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~----~~~~~~l~~l~l~--~~~ 169 (348)
+|...+... ...+. ...+..+ +.+. ..+... .....+++.+++. .++
T Consensus 84 ~g~~~~~~~-----------------~~~~~-------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 139 (264)
T PRK13546 84 NGEVSVIAI-----------------SAGLS-------GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ 139 (264)
T ss_pred CCEEeEEec-----------------ccCCC-------CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence 986311000 00000 0111111 1110 111222 1234566666765 366
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
.+.+|||||+|||+|||||+.+|++|||||||+|||+.++..++++|.++. +.|.|||++||+++++..+||++++|++
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~tiIiisH~~~~i~~~~d~i~~l~~ 218 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQVRQFCTKIAWIEG 218 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence 789999999999999999999999999999999999999999999999985 4589999999999999999999999999
Q ss_pred CEEeeecChhHHHHh
Q 018938 250 GKLQLAMPMDKVKEA 264 (348)
Q Consensus 250 G~i~~~g~~~~~~~~ 264 (348)
|+++..|+.+++...
T Consensus 219 G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 219 GKLKDYGELDDVLPK 233 (264)
T ss_pred CEEEEeCCHHHHHHH
Confidence 999999998887653
No 262
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.6e-42 Score=352.45 Aligned_cols=214 Identities=22% Similarity=0.315 Sum_probs=176.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+|+|++ +++++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++..-
T Consensus 341 ~i~~~~vsf~y~~-------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~--- 410 (582)
T PRK11176 341 DIEFRNVTFTYPG-------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY--- 410 (582)
T ss_pred eEEEEEEEEecCC-------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc---
Confidence 5999999999963 246799999999999999999999999999999999999999999999999864221
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCC-CCHHHHHHHHHHcCCC---------cC----ccCCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDID---------LS----WRMHKVS 175 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~---------~~----~~~~~LS 175 (348)
....+++.++|++|+..++.....+++.++... .+.++..++++..++. .+ .....||
T Consensus 411 --------~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LS 482 (582)
T PRK11176 411 --------TLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482 (582)
T ss_pred --------CHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCC
Confidence 112456778888887766655445555554332 4566666666665532 12 2235699
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+++|++||||||||+||+.+...+++.|.++. .++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIE-KADEILVVEDGEIVER 559 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999874 3789999999998875 5999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+.+++.+.
T Consensus 560 g~~~~l~~~ 568 (582)
T PRK11176 560 GTHAELLAQ 568 (582)
T ss_pred CCHHHHHhC
Confidence 999988754
No 263
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.3e-42 Score=381.72 Aligned_cols=218 Identities=21% Similarity=0.338 Sum_probs=182.8
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
...+|+++||+|+|++ +.+.+|+|+||+|++||++||+||||||||||+|+|+|++.|++|+|.++|.++...
T Consensus 1934 ~~~~L~v~nLsK~Y~~-------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~ 2006 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSG-------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN 2006 (2272)
T ss_pred CCceEEEEEEEEEECC-------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch
Confidence 3458999999999952 135799999999999999999999999999999999999999999999999865211
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGIDP----QRRAELIKVLDID--LSWRMHKVSDG 177 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgG 177 (348)
....++.++|.++...+...+++.+.+. ...+... +.+.++++.+++. .++++++||||
T Consensus 2007 ------------~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGG 2074 (2272)
T TIGR01257 2007 ------------ISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGG 2074 (2272)
T ss_pred ------------HHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHH
Confidence 0123456778777666666667665432 1223222 2345678888886 47789999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+||+||+.+|+||||||||+||||.+++.++++|++++++ |+|||++||++++++.+|||+++|++|+++..|+
T Consensus 2075 qKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999998654 8999999999999999999999999999999999
Q ss_pred hhHHHHh
Q 018938 258 MDKVKEA 264 (348)
Q Consensus 258 ~~~~~~~ 264 (348)
++++...
T Consensus 2154 ~q~Lk~~ 2160 (2272)
T TIGR01257 2154 IQHLKSK 2160 (2272)
T ss_pred HHHHHHH
Confidence 9998654
No 264
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.9e-42 Score=350.63 Aligned_cols=215 Identities=21% Similarity=0.381 Sum_probs=179.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++|++|+|++ +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..-
T Consensus 337 ~~i~~~~v~f~y~~-------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~-- 407 (574)
T PRK11160 337 VSLTLNNVSFTYPD-------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADY-- 407 (574)
T ss_pred CeEEEEEEEEECCC-------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC--
Confidence 46999999999963 235799999999999999999999999999999999999999999999999864321
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCc--C----------ccCCCCCH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL--S----------WRMHKVSD 176 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~----------~~~~~LSg 176 (348)
....+++.+++++|+..++.....+++.++.+..+.+++.++++..++.. . .....|||
T Consensus 408 ---------~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSg 478 (574)
T PRK11160 408 ---------SEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSG 478 (574)
T ss_pred ---------CHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCH
Confidence 11345677888877766655544455545544456677777888777641 1 13467999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQG 555 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999874 37899999999999865 9999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++.+.
T Consensus 556 ~~~~l~~~ 563 (574)
T PRK11160 556 THQELLAQ 563 (574)
T ss_pred CHHHHHhc
Confidence 99988754
No 265
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.7e-42 Score=356.95 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=177.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|++ +.+++|+|+||+|++||.++|+|+||||||||+|+|+|++.|++|+|.++|.++..-
T Consensus 462 ~~I~~~~vsf~Y~~-------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~-- 532 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI-- 532 (694)
T ss_pred ceEEEEEEEEEeCC-------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC--
Confidence 35999999999963 245799999999999999999999999999999999999999999999999865321
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LS 175 (348)
....+++.+++++|+..++.....+++.++.+..+.++..++++..++. . ......||
T Consensus 533 ---------~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 533 ---------DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ---------CHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 1134677888888877666554445555554445666666666665541 1 23346799
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+.+|++||||||||+||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVAD 680 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEee
Confidence 999999999999999999999999999999999999999999875 3789999999999875 6999999999999999
Q ss_pred cChhHHHH
Q 018938 256 MPMDKVKE 263 (348)
Q Consensus 256 g~~~~~~~ 263 (348)
|+.+++.+
T Consensus 681 G~~~eLl~ 688 (694)
T TIGR03375 681 GPKDQVLE 688 (694)
T ss_pred CCHHHHHH
Confidence 99988764
No 266
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.6e-42 Score=306.47 Aligned_cols=193 Identities=24% Similarity=0.366 Sum_probs=153.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++|++++|+ +.++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+...
T Consensus 1 ml~~~~l~~~~~---------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--- 68 (200)
T PRK13540 1 MLDVIELDFDYH---------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--- 68 (200)
T ss_pred CEEEEEEEEEeC---------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC---
Confidence 488999999994 35799999999999999999999999999999999999999999999999754210
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC 185 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA 185 (348)
...+++.++|.++....+...+..+.. +.. .......+.++++.+++. .++++.+|||||+||++||
T Consensus 69 ---------~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la 139 (200)
T PRK13540 69 ---------LCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALL 139 (200)
T ss_pred ---------HHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHH
Confidence 012344566665544333334444332 221 111234567788888875 3667889999999999999
Q ss_pred HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938 186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 245 (348)
Q Consensus 186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~ 245 (348)
|||+.+|++|||||||++||+.++..+.++|+++.+ .|.|||++||+.+++.. ||.-.
T Consensus 140 ral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence 999999999999999999999999999999999854 58999999999999865 88654
No 267
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=344.78 Aligned_cols=210 Identities=23% Similarity=0.307 Sum_probs=157.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|...
T Consensus 1 ml~i~~ls~~~~---------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~------ 65 (530)
T PRK15064 1 MLSTANITMQFG---------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNER------ 65 (530)
T ss_pred CEEEEEEEEEeC---------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE------
Confidence 489999999994 36799999999999999999999999999999999999999999999986310
Q ss_pred cccCcccccchh--------hhhhhhhc--------------CCC--ccccccchHHHH---HhccCCCC-HHHHHHHHH
Q 018938 110 TSSGDLSYLGGE--------WRREVAFA--------------GFE--VPIQMDVSAEKM---IFGVAGID-PQRRAELIK 161 (348)
Q Consensus 110 ~~~~~~~~~~~~--------~~~~~~~~--------------~~~--~~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~ 161 (348)
+.++.+. ....+.+. ... ..........+. .....+.. ..++.++++
T Consensus 66 -----i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (530)
T PRK15064 66 -----LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLL 140 (530)
T ss_pred -----EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 1111110 00000000 000 000000001100 00011111 245667888
Q ss_pred HcCCCc---CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938 162 VLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 238 (348)
Q Consensus 162 ~l~l~~---~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 238 (348)
.+++.. ++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|.+ .|.|||+||||++++.
T Consensus 141 ~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 141 GVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLN 216 (530)
T ss_pred hCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHH
Confidence 899852 357899999999999999999999999999999999999999999999863 4889999999999999
Q ss_pred hhCCEEEEEcCCEEe-eecChhHHHH
Q 018938 239 NWPSHIVYVAHGKLQ-LAMPMDKVKE 263 (348)
Q Consensus 239 ~~~d~v~~l~~G~i~-~~g~~~~~~~ 263 (348)
.+||++++|++|+++ +.|+++++.+
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHH
Confidence 999999999999994 7898888764
No 268
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=291.03 Aligned_cols=203 Identities=21% Similarity=0.357 Sum_probs=173.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.++++++.+.- ++.++|+++||++.+||+++|+||||||||||+|+++-++.|++|.+.+.|+++...
T Consensus 3 lle~kq~~y~a---------~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~--- 70 (223)
T COG4619 3 LLELKQVGYLA---------GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL--- 70 (223)
T ss_pred chHHHHHHhhc---------CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc---
Confidence 35566665443 457899999999999999999999999999999999999999999999999875322
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc----CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV----AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv 182 (348)
-...++.+++|..|+..++......++++.. ...++.....+++.+++. +++.+.+||||||||+
T Consensus 71 --------~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri 142 (223)
T COG4619 71 --------KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI 142 (223)
T ss_pred --------ChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH
Confidence 1245778889988777776665555555432 234566777889999986 4778999999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
+|+|-|..-|+|||||||||+||+.+++.+.++|.++.+++..++++||||.+++.+.+|+++-+..|++
T Consensus 143 AliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 143 ALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999999999999999999999999999999988899999999999999999999999999876
No 269
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.2e-42 Score=330.06 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=178.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
+.+++++++|.|+ +..++++|||+|++||+.+|+|+||||||||+++|.|+++|++|+|.++|+.+....+
T Consensus 3 ~~l~~~~itK~f~---------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFP---------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcC---------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCH
Confidence 4799999999995 4789999999999999999999999999999999999999999999999987533221
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC-----CCC----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA-----GID----PQRRAELIKVLDID--LSWRMHKVSD 176 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~----~~~~~~~l~~l~l~--~~~~~~~LSg 176 (348)
....+..++++.|.+.+.+.+++.++ ..+.. ..+ .+++.++.+.+|+. ++.++.+||-
T Consensus 74 ----------~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsV 143 (501)
T COG3845 74 ----------RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSV 143 (501)
T ss_pred ----------HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCc
Confidence 11234557777777777777776554 44432 112 24566788888875 5788999999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||.|.+||..+|++|||||||+-|-|...+++++.|+++.+ .|+|||+|||.++++.++|||+.+|++|+++...
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 999999999999999999999999999999999999999999975 5999999999999999999999999999988765
Q ss_pred C
Q 018938 257 P 257 (348)
Q Consensus 257 ~ 257 (348)
+
T Consensus 223 ~ 223 (501)
T COG3845 223 D 223 (501)
T ss_pred c
Confidence 5
No 270
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=335.06 Aligned_cols=206 Identities=19% Similarity=0.302 Sum_probs=164.8
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++++++||++.|++. ..+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.....
T Consensus 19 ~~mL~lknL~~~~~~~------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i-- 90 (549)
T PRK13545 19 KPFDKLKDLFFRSKDG------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALI-- 90 (549)
T ss_pred cceeEEEEEEEecCCC------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeE--
Confidence 4579999999999531 12469999999999999999999999999999999999999999999999864210
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
.+ ...+ ...++..+.+ +. ..+.+. +.+.++++.+++. .++++.+|||||
T Consensus 91 --------~~-------~~~l-------~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQ 148 (549)
T PRK13545 91 --------AI-------SSGL-------NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGM 148 (549)
T ss_pred --------Ee-------cccc-------CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHH
Confidence 00 0000 0112222221 11 112222 2345678888885 467899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
|||++|||||+.+|++|||||||+|||+.++..++++|.++. +.|.|||++|||++++..+||++++|++|+++..|++
T Consensus 149 rQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~-~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~ 227 (549)
T PRK13545 149 KSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDI 227 (549)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999985 4589999999999999999999999999999999999
Q ss_pred hHHHHh
Q 018938 259 DKVKEA 264 (348)
Q Consensus 259 ~~~~~~ 264 (348)
+++...
T Consensus 228 ~el~~~ 233 (549)
T PRK13545 228 KEVVDH 233 (549)
T ss_pred HHHHhh
Confidence 887653
No 271
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2e-41 Score=344.85 Aligned_cols=202 Identities=25% Similarity=0.294 Sum_probs=158.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|++ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++..
T Consensus 5 ~~l~i~~l~~~y~~--------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~------ 70 (556)
T PRK11819 5 YIYTMNRVSKVVPP--------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI------ 70 (556)
T ss_pred EEEEEeeEEEEeCC--------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------
Confidence 58999999999941 4679999999999999999999999999999999999999999999886421
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-h-----------------------------------------
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F----------------------------------------- 146 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------------------------------- 146 (348)
.+.++.+ ...+...+++.+.+ +
T Consensus 71 -----~i~~v~Q-----------~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (556)
T PRK11819 71 -----KVGYLPQ-----------EPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIID 134 (556)
T ss_pred -----EEEEEec-----------CCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHH
Confidence 1112211 11110011110000 0
Q ss_pred ccCCCC-HHHHHHHHHHcCCC-cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcC
Q 018938 147 GVAGID-PQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 224 (348)
Q Consensus 147 ~~~~~~-~~~~~~~l~~l~l~-~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g 224 (348)
....+. ..++.++++.+++. .++++.+|||||||||+|||||+.+|++||||||||+||+.++..+.++|+++ +
T Consensus 135 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~ 210 (556)
T PRK11819 135 AADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----P 210 (556)
T ss_pred hcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----C
Confidence 000011 23456778888885 46788999999999999999999999999999999999999999999999875 3
Q ss_pred cEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHHHHh
Q 018938 225 ATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKEA 264 (348)
Q Consensus 225 ~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~ 264 (348)
.|||+||||++++..+||+|++|++|+++ +.|+.+++.+.
T Consensus 211 ~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 211 GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHHH
Confidence 59999999999999999999999999986 77888877543
No 272
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=346.31 Aligned_cols=200 Identities=21% Similarity=0.304 Sum_probs=162.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 318 ~~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~------ 382 (530)
T PRK15064 318 NALEVENLTKGFD---------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA------ 382 (530)
T ss_pred ceEEEEeeEEeeC---------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce------
Confidence 4899999999994 3579999999999999999999999999999999999999999999987631
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHHhcc--CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIFGV--AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRR 181 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQR 181 (348)
.+. |+++... +....+..+.+... .....+++.++++.+++. .++++.+||||||||
T Consensus 383 -----~i~-----------~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 446 (530)
T PRK15064 383 -----NIG-----------YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGR 446 (530)
T ss_pred -----EEE-----------EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHH
Confidence 122 2222211 11122333322111 112344567889999883 367899999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDK 260 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 260 (348)
|+|||||+.+|++|||||||+|||+.++..++++|+++ +.|||+||||++++..+||++++|++|+++ ..|++++
T Consensus 447 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~ 522 (530)
T PRK15064 447 MLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEE 522 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHH
Confidence 99999999999999999999999999999999999865 459999999999999999999999999998 7788877
Q ss_pred HHH
Q 018938 261 VKE 263 (348)
Q Consensus 261 ~~~ 263 (348)
+.+
T Consensus 523 ~~~ 525 (530)
T PRK15064 523 YLR 525 (530)
T ss_pred HHH
Confidence 654
No 273
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-41 Score=348.98 Aligned_cols=212 Identities=18% Similarity=0.270 Sum_probs=177.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++++|++ +.++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.++..-
T Consensus 340 ~i~~~~v~f~y~~--------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~--- 408 (592)
T PRK10790 340 RIDIDNVSFAYRD--------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL--- 408 (592)
T ss_pred eEEEEEEEEEeCC--------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhC---
Confidence 5999999999962 35799999999999999999999999999999999999999999999999865321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg 176 (348)
....+++.++|++|++.++.....+++.++. ..+.+++.++++..++. .+ .....|||
T Consensus 409 --------~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 409 --------SHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred --------CHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 1235677889998887776665455555543 44566677777766642 11 23457999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIV-EADTILVLHRGQAVEQG 556 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999998753 689999999998876 59999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++.+.
T Consensus 557 ~~~~L~~~ 564 (592)
T PRK10790 557 THQQLLAA 564 (592)
T ss_pred CHHHHHhC
Confidence 99998754
No 274
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7.7e-42 Score=303.86 Aligned_cols=192 Identities=25% Similarity=0.331 Sum_probs=150.6
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--- 68 (198)
T TIGR01189 1 LAARNLACSRG---------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR--- 68 (198)
T ss_pred CEEEEEEEEEC---------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch---
Confidence 47899999994 367999999999999999999999999999999999999999999999997642210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC 185 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA 185 (348)
..+++.++|.++........+..+.+ +. ........+.++++.+++. .++++.+|||||||||+||
T Consensus 69 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 139 (198)
T TIGR01189 69 ---------DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALA 139 (198)
T ss_pred ---------HHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHH
Confidence 11233455554443333333443322 11 1111233567788888885 3678899999999999999
Q ss_pred HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938 186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 246 (348)
Q Consensus 186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~ 246 (348)
|||+.+|++|||||||++||+.++..++++|.++.+ .|.|||++||+...+ .|++++.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 140 RLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc--cceEEee
Confidence 999999999999999999999999999999999864 489999999998655 4777764
No 275
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-42 Score=345.70 Aligned_cols=210 Identities=23% Similarity=0.413 Sum_probs=163.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-CCceEEEcCeecccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-EPEMVKVLGRSAFHD 106 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-~~G~i~i~G~~~~~~ 106 (348)
.++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.++ ++|+|.++|++....
T Consensus 258 ~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~ 328 (490)
T PRK10938 258 EPRIVLNNGVVSYN---------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSG 328 (490)
T ss_pred CceEEEeceEEEEC---------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCC
Confidence 46899999999994 35699999999999999999999999999999999998765 689999999753211
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccc--cchHHHHHh-cc------C-CCC---HHHHHHHHHHcCCCc---Ccc
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQM--DVSAEKMIF-GV------A-GID---PQRRAELIKVLDIDL---SWR 170 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~------~-~~~---~~~~~~~l~~l~l~~---~~~ 170 (348)
... ...+..++|+++...... ..+..++.. .. . ... .+++.++++.+++.. +++
T Consensus 329 ~~~----------~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 398 (490)
T PRK10938 329 ETI----------WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAP 398 (490)
T ss_pred CCH----------HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCc
Confidence 000 012334555544322211 123344321 11 0 111 234567888898853 567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh-hCCEEEEEcC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN-WPSHIVYVAH 249 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~-~~d~v~~l~~ 249 (348)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.+.|||+||||++++.. +||++++|++
T Consensus 399 ~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 399 FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPD 478 (490)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecC
Confidence 899999999999999999999999999999999999999999999999976534579999999999987 5999999999
Q ss_pred CEEeeec
Q 018938 250 GKLQLAM 256 (348)
Q Consensus 250 G~i~~~g 256 (348)
|++++..
T Consensus 479 G~i~~~~ 485 (490)
T PRK10938 479 GDIYRYV 485 (490)
T ss_pred CceEEee
Confidence 9987654
No 276
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-42 Score=297.99 Aligned_cols=171 Identities=28% Similarity=0.463 Sum_probs=138.0
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ ....+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus 1 l~~~~l~~~~~~-------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~--- 70 (171)
T cd03228 1 IEFKNVSFSYPG-------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--- 70 (171)
T ss_pred CEEEEEEEEcCC-------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC---
Confidence 468999999953 1136999999999999999999999999999999999999999999999997542110
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK 190 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~ 190 (348)
...+++.++|.+++..++. .+.. +-+ |||||||||+|||||+.
T Consensus 71 --------~~~~~~~i~~~~~~~~~~~-~t~~---------------e~l-------------LS~G~~~rl~la~al~~ 113 (171)
T cd03228 71 --------LESLRKNIAYVPQDPFLFS-GTIR---------------ENI-------------LSGGQRQRIAIARALLR 113 (171)
T ss_pred --------HHHHHhhEEEEcCCchhcc-chHH---------------HHh-------------hCHHHHHHHHHHHHHhc
Confidence 0112334555543321111 1111 101 99999999999999999
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
+|++|||||||+|||+.++..+.++|+++. + ++|||++|||++++.. ||++++|++|+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999985 3 6899999999999987 99999999885
No 277
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.2e-42 Score=308.91 Aligned_cols=208 Identities=25% Similarity=0.347 Sum_probs=155.7
Q ss_pred eEEEeceEEEecCCCCCCCCC-CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe----ecc
Q 018938 30 TVEINALKFTYPGIDGHPPPG-STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR----SAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g-~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~----~~~ 104 (348)
||+++||+++|+.... .+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ml~~~~l~~~~~~~~~---~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQ---GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccC---CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchh
Confidence 4889999999952100 01 246999999999999999999999999999999999999999999999742 111
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCCc---CccCCCC
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDIDL---SWRMHKV 174 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~~---~~~~~~L 174 (348)
.... ... ....++.++|++++...+..++..+.+ +. ..+.. .+++.++++.+++.. ++++.+|
T Consensus 78 ~~~~----~~~---~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 78 QASP----REV---LEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred hcCH----HHH---HHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 0000 000 000122356665554444444444332 11 11222 234567788888852 5678999
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
|||||||++|||||+.+|++|||||||++||+.++..+.++|+++.+ .|.|||++||+++++..+||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999864 58999999999999999999998763
No 278
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-42 Score=331.69 Aligned_cols=212 Identities=22% Similarity=0.329 Sum_probs=186.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+++|++ ++++|+++||+|++||.+||+|+|||||||++|+|.+++. .+|+|.++|+++..-.
T Consensus 350 ~~I~F~dV~f~y~~--------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~- 419 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP--------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVS- 419 (591)
T ss_pred CcEEEEeeEEEeCC--------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhC-
Confidence 35999999999963 4569999999999999999999999999999999999987 9999999998764321
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-----c--------CccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-----L--------SWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-----~--------~~~~~~LS 175 (348)
...+|+.+++++|+..++.+...+++.++....+.+++.++++..++. + ..+...||
T Consensus 420 ----------~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LS 489 (591)
T KOG0057|consen 420 ----------LESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLS 489 (591)
T ss_pred ----------hHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccc
Confidence 134678899999998888777778888888777888888888888763 1 12346799
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+||||++.+|+|+++|||||+||.++..++++.+.+. ..++|+|+|-|+++.+.. ||+|+++++|++.+.
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY 566 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe
Confidence 99999999999999999999999999999999999999999984 458999999999999975 899999999999999
Q ss_pred cChhHHHH
Q 018938 256 MPMDKVKE 263 (348)
Q Consensus 256 g~~~~~~~ 263 (348)
|+.+++..
T Consensus 567 gth~ell~ 574 (591)
T KOG0057|consen 567 GTHSELLA 574 (591)
T ss_pred ccHHHHhh
Confidence 99999886
No 279
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-41 Score=304.06 Aligned_cols=187 Identities=22% Similarity=0.325 Sum_probs=140.6
Q ss_pred EEEeceEEEecCCCCCCCCCC---CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGS---TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~---~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
|+++||+++|++ .. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 1 l~~~~l~~~~~~-------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i----- 68 (204)
T cd03250 1 ISVEDASFTWDS-------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI----- 68 (204)
T ss_pred CEEeEEEEecCC-------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEE-----
Confidence 478999999953 11 369999999999999999999999999999999999999999999998831
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKV 174 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~L 174 (348)
.++ +++..+. ..+..+.+........+...+.++.+++ . .+..+.+|
T Consensus 69 --------~~~-----------~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 128 (204)
T cd03250 69 --------AYV-----------SQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINL 128 (204)
T ss_pred --------EEE-----------ecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcC
Confidence 111 1111111 1222222211111122222222222221 1 23457899
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
|+|||||++|||||+.+|+++||||||++||+.+++.+++ +++++.++ |.|||++||+++.+.. ||++++|++|+
T Consensus 129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999999999999998 46666544 8999999999999987 99999999985
No 280
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.7e-42 Score=357.99 Aligned_cols=217 Identities=23% Similarity=0.321 Sum_probs=180.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|+.. .+.++|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|.++|.++..-
T Consensus 349 g~ief~nV~FsYPsR------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~-- 420 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL-- 420 (1228)
T ss_pred cceEEEEEEecCCCC------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc--
Confidence 469999999999852 246899999999999999999999999999999999999999999999999865321
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LS 175 (348)
....++..++.+.|++.++.....+++.++.++.+.+++.++.+..+. + ...+-.+||
T Consensus 421 ---------~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 421 ---------NLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred ---------chHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 112456778888777655555555667777766666655555544321 1 123345699
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||||||||+.+|+|||||||||+||+++...+.+.|.+.. .|+|-|+|+|++..+.. +|+|++|++|+|++.
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQ 568 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999874 48899999999999987 999999999999999
Q ss_pred cChhHHHHhh
Q 018938 256 MPMDKVKEAS 265 (348)
Q Consensus 256 g~~~~~~~~~ 265 (348)
|+.+++....
T Consensus 569 G~h~ELi~~~ 578 (1228)
T KOG0055|consen 569 GTHDELIALG 578 (1228)
T ss_pred cCHHHHHhcc
Confidence 9999998765
No 281
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-42 Score=343.32 Aligned_cols=210 Identities=18% Similarity=0.270 Sum_probs=165.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
+.++++|++ + ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....
T Consensus 256 ~~l~~~~~~--~-----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 256 VRLRLDGLK--G-----------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred cEEEEeccc--c-----------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCH
Confidence 468899987 3 148999999999999999999999999999999999999999999999976421100
Q ss_pred ccccCcccccchhhhhhhhhcCCCcc---ccccchHHHH-HhccC------C---CC---HHHHHHHHHHcCCC---cCc
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVP---IQMDVSAEKM-IFGVA------G---ID---PQRRAELIKVLDID---LSW 169 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~------~---~~---~~~~~~~l~~l~l~---~~~ 169 (348)
....+..++|.++... .+...+..+. .++.. + .. .+.+.++++.+++. .++
T Consensus 323 ----------~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 392 (501)
T PRK11288 323 ----------RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQ 392 (501)
T ss_pred ----------HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccC
Confidence 0011233455544321 2223333332 22110 0 01 13456788889883 367
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||+||||++++..+||++++|++
T Consensus 393 ~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~ 471 (501)
T PRK11288 393 LIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMRE 471 (501)
T ss_pred ccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHhhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999999875 589999999999999999999999999
Q ss_pred CEEeeecChhHHH
Q 018938 250 GKLQLAMPMDKVK 262 (348)
Q Consensus 250 G~i~~~g~~~~~~ 262 (348)
|++++.|+++++.
T Consensus 472 g~i~~~~~~~~~~ 484 (501)
T PRK11288 472 GRIAGELAREQAT 484 (501)
T ss_pred CEEEEEEccccCC
Confidence 9999999887654
No 282
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.2e-41 Score=345.54 Aligned_cols=213 Identities=22% Similarity=0.380 Sum_probs=179.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++|+|+ +++++|+|+||++++||.+||+||||||||||+++|+|++.|++|+|.++|.++..-
T Consensus 328 ~I~f~~vsf~y~--------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i--- 396 (567)
T COG1132 328 SIEFENVSFSYP--------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI--- 396 (567)
T ss_pred eEEEEEEEEEcC--------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc---
Confidence 499999999995 247899999999999999999999999999999999999999999999999875321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSg 176 (348)
....+++.+++++|+..++.....+++.++.+..+.+++.++++..++ + .......|||
T Consensus 397 --------~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 397 --------SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred --------CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 123567888988877777665555666677665566666555554332 1 1233467999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+.+|++||||||||+||+.+...+.+.+.++. +++|+|+|+|.+..+.. ||+|++|++|++++.|
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G 545 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERG 545 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999775 36799999999999987 9999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++...
T Consensus 546 ~h~eLl~~ 553 (567)
T COG1132 546 THEELLAK 553 (567)
T ss_pred CHHHHHHc
Confidence 99999875
No 283
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=8.7e-42 Score=344.21 Aligned_cols=211 Identities=17% Similarity=0.257 Sum_probs=165.5
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 266 ~~~l~~~~l~~--------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~ 331 (510)
T PRK15439 266 APVLTVEDLTG--------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALS 331 (510)
T ss_pred CceEEEeCCCC--------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCC
Confidence 45799999982 1599999999999999999999999999999999999999999999997643211
Q ss_pred cccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-h------ccC-CCC--HHHHHHHHHHcCCC---cCccC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-F------GVA-GID--PQRRAELIKVLDID---LSWRM 171 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~------~~~-~~~--~~~~~~~l~~l~l~---~~~~~ 171 (348)
.. ...+..++|+++.. .++...+..+.+ . ... ... .+.+.++++.+++. .++++
T Consensus 332 ~~----------~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 401 (510)
T PRK15439 332 TA----------QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA 401 (510)
T ss_pred HH----------HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc
Confidence 00 01122355554432 122223332221 1 010 111 12356788889885 36789
Q ss_pred CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||++++|++|+
T Consensus 402 ~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGE 480 (510)
T ss_pred ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999975 48999999999999999999999999999
Q ss_pred EeeecChhHHHH
Q 018938 252 LQLAMPMDKVKE 263 (348)
Q Consensus 252 i~~~g~~~~~~~ 263 (348)
++..+.++++..
T Consensus 481 i~~~~~~~~~~~ 492 (510)
T PRK15439 481 ISGALTGAAINV 492 (510)
T ss_pred EEEEEccccCCH
Confidence 999998877653
No 284
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.1e-41 Score=304.33 Aligned_cols=202 Identities=19% Similarity=0.283 Sum_probs=150.6
Q ss_pred EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938 32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111 (348)
Q Consensus 32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~ 111 (348)
.+.|++++|++ ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+........
T Consensus 2 ~~~~~~~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGS--------GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCC--------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccccc
Confidence 57899999963 3679999999999999999999999999999999999999999999999975422110000
Q ss_pred cCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCCHHH
Q 018938 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVSDGQ 178 (348)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGq 178 (348)
....++.++|.+++..++ ..+..+.+........+...++++.+++. .+.++.+|||||
T Consensus 74 -------~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 74 -------RSRNRYSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred -------chhhcceEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 001123455555544333 23444333211112233334455555432 134678999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH--HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR--FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~--~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
||||+|||||+.+|++|||||||++||+.++..+++ +++.+ ++.|.|||++||+++++. .||++++|++|.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999999999999999999998 56655 455899999999999985 699999999873
No 285
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.2e-41 Score=353.43 Aligned_cols=214 Identities=22% Similarity=0.333 Sum_probs=173.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|++. .++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..-
T Consensus 477 ~~I~~~nVsf~Y~~~------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~-- 548 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY-- 548 (711)
T ss_pred CeEEEEEEEEECCCC------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc--
Confidence 359999999999631 135799999999999999999999999999999999999999999999999875321
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LS 175 (348)
....+++.+++++|+..++.....+++.++....+.++..++++..++. .+ ....+||
T Consensus 549 ---------~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 619 (711)
T TIGR00958 549 ---------DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLS 619 (711)
T ss_pred ---------CHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCC
Confidence 1134567788888877666555455665555545566666666665542 11 2345799
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+++|++||||||||+||+++...+.+ .. ...++|+|+|||+++.+. .||+|++|++|+|++.
T Consensus 620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEM 694 (711)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999998888 22 234789999999999886 5999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+.+++.+.
T Consensus 695 Gt~~eL~~~ 703 (711)
T TIGR00958 695 GTHKQLMED 703 (711)
T ss_pred eCHHHHHhC
Confidence 999988754
No 286
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.1e-41 Score=344.28 Aligned_cols=213 Identities=21% Similarity=0.298 Sum_probs=174.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+|+|+|+++|++|+|.++|.++..-
T Consensus 334 ~I~~~~vsf~y~~--------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~--- 402 (588)
T PRK13657 334 AVEFDDVSFSYDN--------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV--- 402 (588)
T ss_pred eEEEEEEEEEeCC--------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC---
Confidence 5999999999952 35699999999999999999999999999999999999999999999999865321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg 176 (348)
....+++.++|++|+..++.....+++.++.+..+.++..++++..++. .+ .....|||
T Consensus 403 --------~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 403 --------TRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred --------CHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 1234567788888777666554445555544444555555565554431 12 23457999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+++|++||||||||+||+.+...+++.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVR-NADRILVFDNGRVVESG 551 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998864 3789999999998875 69999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++.+.
T Consensus 552 ~~~~l~~~ 559 (588)
T PRK13657 552 SFDELVAR 559 (588)
T ss_pred CHHHHHHC
Confidence 99888653
No 287
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.4e-41 Score=353.56 Aligned_cols=212 Identities=23% Similarity=0.337 Sum_probs=175.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+|+|+. ++++|+|+||+|++|+.++|+||||||||||+|+|+|++.|++|+|.++|.++..-
T Consensus 473 ~I~~~~vsf~y~~--------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~--- 541 (708)
T TIGR01193 473 DIVINDVSYSYGY--------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI--- 541 (708)
T ss_pred cEEEEEEEEEcCC--------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc---
Confidence 5999999999952 35799999999999999999999999999999999999999999999999865321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhc-cCCCCHHHHHHHHHHcCCC---------c----CccCCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG-VAGIDPQRRAELIKVLDID---------L----SWRMHKVS 175 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LS 175 (348)
....+++.++|++|+..++.....+++.++ ....+.++..++++..++. . ......||
T Consensus 542 --------~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 542 --------DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred --------CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 123467788998887766655444555554 2345566666666655441 1 22346799
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++ .++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQ 689 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHHH-cCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999874 3789999999999875 6999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+.+++.+.
T Consensus 690 G~~~~L~~~ 698 (708)
T TIGR01193 690 GSHDELLDR 698 (708)
T ss_pred CCHHHHHhc
Confidence 999988653
No 288
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=342.40 Aligned_cols=209 Identities=21% Similarity=0.363 Sum_probs=166.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 256 ~~l~~~~l~~--------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 256 VRLKVDNLSG--------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred cEEEEeCccc--------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 5789999873 26999999999999999999999999999999999999999999999976421100
Q ss_pred ccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-hcc----C---C-CC----HHHHHHHHHHcCCC---cCc
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-FGV----A---G-ID----PQRRAELIKVLDID---LSW 169 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~----~---~-~~----~~~~~~~l~~l~l~---~~~ 169 (348)
....+..++|+++.. .....++..+.+ +.. . + .. .+++.++++.+++. .++
T Consensus 322 ----------~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 391 (501)
T PRK10762 322 ----------QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ 391 (501)
T ss_pred ----------HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC
Confidence 001233466665543 122334443322 110 0 0 11 23456788888883 367
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |.|||++|||++++..+||++++|++
T Consensus 392 ~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~ 470 (501)
T PRK10762 392 AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHE 470 (501)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 89999999999999999999999999999999999999999999999998754 99999999999999999999999999
Q ss_pred CEEeeecChhHHH
Q 018938 250 GKLQLAMPMDKVK 262 (348)
Q Consensus 250 G~i~~~g~~~~~~ 262 (348)
|+++..++++++.
T Consensus 471 G~i~~~~~~~~~~ 483 (501)
T PRK10762 471 GRISGEFTREQAT 483 (501)
T ss_pred CEEEEEeccccCC
Confidence 9999988877653
No 289
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-42 Score=302.91 Aligned_cols=212 Identities=24% Similarity=0.415 Sum_probs=170.7
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
..++|+++|+++.|+ ++++|+|||++|++||.++|+|||||||||||++++|.++|++|.+.+.|+..-..
T Consensus 28 ~~~li~l~~v~v~r~---------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~ 98 (257)
T COG1119 28 NEPLIELKNVSVRRN---------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG 98 (257)
T ss_pred CcceEEecceEEEEC---------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCC
Confidence 456899999999995 57899999999999999999999999999999999999999999999999864322
Q ss_pred ccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-------hccC--CCCH---HHHHHHHHHcCCC--cCcc
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-------FGVA--GIDP---QRRAELIKVLDID--LSWR 170 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~--~~~~---~~~~~~l~~l~l~--~~~~ 170 (348)
. .. .++++.++++..... +....++.+.+ .+.. ..+. +++..+++.+++. .+++
T Consensus 99 ~---------~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~ 168 (257)
T COG1119 99 E---------TI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRP 168 (257)
T ss_pred c---------ch-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCc
Confidence 1 11 356677777642211 11111222221 1111 2222 4556788888886 4788
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
..+||-||||||.|||||+.+|++|||||||+|||...+..+.+.|.+++.. .+.++|+|||..+++....++++.+++
T Consensus 169 ~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~ 248 (257)
T COG1119 169 FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE 248 (257)
T ss_pred hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeC
Confidence 9999999999999999999999999999999999999999999999998743 367899999999999999999999999
Q ss_pred CEEeeecC
Q 018938 250 GKLQLAMP 257 (348)
Q Consensus 250 G~i~~~g~ 257 (348)
|+++..|.
T Consensus 249 g~v~~~g~ 256 (257)
T COG1119 249 GEVVAQGK 256 (257)
T ss_pred Cceeeccc
Confidence 99998763
No 290
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=317.57 Aligned_cols=234 Identities=23% Similarity=0.318 Sum_probs=182.0
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS 102 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~ 102 (348)
.++|+++||++.|...+ +...++++|||+|++||.++|+|+||||||-..+.|+|+++- .+|+|.++|.+
T Consensus 4 ~~lL~v~nLsV~f~~~~-----~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~d 78 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG-----GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGED 78 (534)
T ss_pred CcceeeeccEEEEecCC-----cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChh
Confidence 46899999999995421 467899999999999999999999999999999999999743 24678888876
Q ss_pred ccccccccccCcccccchhhhhhhhhcCCCcc--ccccchHHH-H---HhccCCCC----HHHHHHHHHHcCCC-----c
Q 018938 103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEK-M---IFGVAGID----PQRRAELIKVLDID-----L 167 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~---~~~~~~~~----~~~~~~~l~~l~l~-----~ 167 (348)
+..-... .+.. ....++++++|++- +++-.+... + +....+.+ +.++.++++.+|+. +
T Consensus 79 ll~~se~----~lr~---iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl 151 (534)
T COG4172 79 LLAASER----QLRG---VRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL 151 (534)
T ss_pred hhcCCHH----HHhh---hcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh
Confidence 5432211 0000 01134555544321 222222221 1 11111222 24456778888885 3
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
+.+|++|||||||||.||+||+++|++||.||||++||...+.+|+++|+++.++.|+++++||||+..+.+++|||+||
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM 231 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVM 231 (534)
T ss_pred hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEE
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEeeecChhHHHHhhhhhhHHHH
Q 018938 248 AHGKLQLAMPMDKVKEASKLSLMRTV 273 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~~~~~~~~~~~~ 273 (348)
.+|++++.|..+.++..+.+.+.+.+
T Consensus 232 ~~G~ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 232 QHGEIVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred eccEEeecCcHHHHhhCCCChHHHHH
Confidence 99999999999999998888765543
No 291
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=341.10 Aligned_cols=212 Identities=19% Similarity=0.236 Sum_probs=163.4
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||++.| +.+|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++....
T Consensus 248 ~~~i~~~~l~~~~-----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 248 EVILEVRNLTSLR-----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHN 316 (491)
T ss_pred CcEEEEeCccccc-----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCC
Confidence 3589999999975 25899999999999999999999999999999999999999999999997653211
Q ss_pred cccccCcccccchhhhhhhhhcCCCcc---ccccch------HHHHHhcc--CC-CC----HHHHHHHHHHcCCC---cC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVP---IQMDVS------AEKMIFGV--AG-ID----PQRRAELIKVLDID---LS 168 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~--~~-~~----~~~~~~~l~~l~l~---~~ 168 (348)
.. ...+..++|+++... .+...+ ..++.... .+ .. .+.+.++++.+++. .+
T Consensus 317 ~~----------~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 386 (491)
T PRK10982 317 AN----------EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHR 386 (491)
T ss_pred HH----------HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcc
Confidence 00 001122333332210 111111 11111110 01 11 23456778888873 36
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..++++|.++.+ .|.|||++|||++++..+||++++|+
T Consensus 387 ~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~ 465 (491)
T PRK10982 387 TQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPELLGITDRILVMS 465 (491)
T ss_pred cccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChHHHHhhCCEEEEEE
Confidence 78999999999999999999999999999999999999999999999999865 59999999999999999999999999
Q ss_pred CCEEeeecChhHH
Q 018938 249 HGKLQLAMPMDKV 261 (348)
Q Consensus 249 ~G~i~~~g~~~~~ 261 (348)
+|+++..++.+++
T Consensus 466 ~g~i~~~~~~~~~ 478 (491)
T PRK10982 466 NGLVAGIVDTKTT 478 (491)
T ss_pred CCEEEEEEccccC
Confidence 9999987766543
No 292
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2e-41 Score=375.59 Aligned_cols=216 Identities=22% Similarity=0.297 Sum_probs=181.5
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.+.|+++||+|.|++ +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...
T Consensus 926 ~~~L~I~nLsK~y~~-------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~- 997 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN- 997 (2272)
T ss_pred CceEEEEeEEEEecC-------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch-
Confidence 357999999999952 246799999999999999999999999999999999999999999999999865211
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
....++.+++.++...+...+++.+.+ +. ..+.. .+++.++++.+++. .++++.+|||||
T Consensus 998 -----------~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGq 1066 (2272)
T TIGR01257 998 -----------LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGM 1066 (2272)
T ss_pred -----------HHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 112345677777766566666666543 21 22222 23456788899986 467899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+||+||+.+|++|||||||+|||+.+++.++++|+++. + |+|||++|||++++..+||||++|++|+++..|++
T Consensus 1067 KQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999984 3 89999999999999999999999999999999999
Q ss_pred hHHHHh
Q 018938 259 DKVKEA 264 (348)
Q Consensus 259 ~~~~~~ 264 (348)
+.+.+.
T Consensus 1145 ~~Lk~~ 1150 (2272)
T TIGR01257 1145 LFLKNC 1150 (2272)
T ss_pred HHHHHh
Confidence 988654
No 293
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6e-41 Score=340.81 Aligned_cols=214 Identities=22% Similarity=0.323 Sum_probs=169.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++|++|+|++ +++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 315 ~~i~~~~v~~~y~~-------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~- 386 (544)
T TIGR01842 315 GHLSVENVTIVPPG-------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD- 386 (544)
T ss_pred CeEEEEEEEEEcCC-------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCC-
Confidence 35999999999963 2457999999999999999999999999999999999999999999999997643211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHH---------c--CCC--cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV---------L--DID--LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------l--~l~--~~~~~~~LS 175 (348)
...+++.+++++++..++.....+++.+.....+.++..+.++. + |++ .......||
T Consensus 387 ----------~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 456 (544)
T TIGR01842 387 ----------RETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456 (544)
T ss_pred ----------HHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC
Confidence 12345667788776655544333343323222344444333333 3 222 234567899
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+.+|++|||||||++||+.++..+.+.|.++. ..++|+|++||+++.+. .||+|++|++|++++.
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRPSLLG-CVDKILVLQDGRIARF 534 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHh-hCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999999875 34789999999999764 6999999999999999
Q ss_pred cChhHHH
Q 018938 256 MPMDKVK 262 (348)
Q Consensus 256 g~~~~~~ 262 (348)
|+.+++.
T Consensus 535 g~~~~l~ 541 (544)
T TIGR01842 535 GERDEVL 541 (544)
T ss_pred CCHHHHh
Confidence 9987764
No 294
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.1e-41 Score=349.19 Aligned_cols=215 Identities=20% Similarity=0.306 Sum_probs=175.9
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|++ +.+++|+|+||+|++|+.++|+|+||||||||+|+|+|++.|++|+|.++|.++..-
T Consensus 454 ~~i~~~~vsf~y~~-------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~-- 524 (694)
T TIGR01846 454 GAITFENIRFRYAP-------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA-- 524 (694)
T ss_pred CeEEEEEEEEEcCC-------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhC--
Confidence 35999999999963 345799999999999999999999999999999999999999999999999865321
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LS 175 (348)
....+++.+++++|+..++.....+++.++.+..+.++..++++..++ + .......||
T Consensus 525 ---------~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LS 595 (694)
T TIGR01846 525 ---------DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS 595 (694)
T ss_pred ---------CHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCC
Confidence 112456778888777665554444455444444455555555555443 1 123456899
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAES 672 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999874 47899999999999865 999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+.+++.+.
T Consensus 673 g~~~~l~~~ 681 (694)
T TIGR01846 673 GRHEELLAL 681 (694)
T ss_pred CCHHHHHHc
Confidence 999988764
No 295
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4e-41 Score=291.30 Aligned_cols=164 Identities=20% Similarity=0.323 Sum_probs=133.3
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|++ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 i~~~~~~~~~~~--------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--------- 63 (166)
T cd03223 1 IELENLSLATPD--------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--------- 63 (166)
T ss_pred CEEEEEEEEcCC--------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------
Confidence 468999999952 357999999999999999999999999999999999999999999988762
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK 190 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~ 190 (348)
+.++|.+++..+. ..+..+.+.. . ++.+||||||||++|||||+.
T Consensus 64 -------------~~i~~~~q~~~~~-~~tv~~nl~~----------------~-----~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 64 -------------EDLLFLPQRPYLP-LGTLREQLIY----------------P-----WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred -------------ceEEEECCCCccc-cccHHHHhhc----------------c-----CCCCCCHHHHHHHHHHHHHHc
Confidence 1122332222111 1222222210 0 468999999999999999999
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
+|++|||||||++||+.++..+.++|+++ +.|+|++|||++++ .+||++++|+++-
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 99999999999999999999999999864 58999999999876 5999999998763
No 296
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1e-40 Score=341.54 Aligned_cols=213 Identities=22% Similarity=0.296 Sum_probs=170.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++|+|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..-.
T Consensus 334 ~i~~~~v~~~y~~--------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-- 403 (585)
T TIGR01192 334 AVEFRHITFEFAN--------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT-- 403 (585)
T ss_pred eEEEEEEEEECCC--------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCC--
Confidence 5999999999952 356899999999999999999999999999999999999999999999997643211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-----------CC--cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-----------ID--LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LSg 176 (348)
...+++.+++++++..++.....+++.++....+.++..++++..+ ++ .......|||
T Consensus 404 ---------~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 404 ---------RESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred ---------HHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 1234566777777655544433344444433334444433333322 22 2345678999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|.++. .++|||+|||+++.+. .||+|++|++|++++.|
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKG 551 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHHH-cCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999873 3899999999999985 59999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++.+.
T Consensus 552 ~~~~l~~~ 559 (585)
T TIGR01192 552 SFQELIQK 559 (585)
T ss_pred CHHHHHHC
Confidence 99888654
No 297
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.6e-41 Score=340.87 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=173.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++++|+. ++.++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 313 ~I~~~~v~~~y~~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~--- 382 (569)
T PRK10789 313 ELDVNIRQFTYPQ-------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL--- 382 (569)
T ss_pred cEEEEEEEEECCC-------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhC---
Confidence 5899999999963 235799999999999999999999999999999999999999999999999864321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSg 176 (348)
....+++.+++++++..++.....+++.++....+.++..++++..++. .......|||
T Consensus 383 --------~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSg 454 (569)
T PRK10789 383 --------QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSG 454 (569)
T ss_pred --------CHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCH
Confidence 1124566788887776655443344444443344555555555554431 1234567999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 455 Gq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g 531 (569)
T PRK10789 455 GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALT-EASEILVMQHGHIAQRG 531 (569)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHH-cCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999874 4899999999999886 59999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++.+.
T Consensus 532 ~~~~l~~~ 539 (569)
T PRK10789 532 NHDQLAQQ 539 (569)
T ss_pred CHHHHHHc
Confidence 99988754
No 298
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=343.94 Aligned_cols=214 Identities=22% Similarity=0.253 Sum_probs=159.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+++|+ ++.+|+|+||+|++|+++||+||||||||||||+|+|++.|++|+|.++|.........
T Consensus 1 ~i~i~nls~~~g---------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q 71 (638)
T PRK10636 1 MIVFSSLQIRRG---------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQ 71 (638)
T ss_pred CEEEEEEEEEeC---------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEec
Confidence 489999999994 46799999999999999999999999999999999999999999999987521000000
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchH-----------HHH--Hh----ccCCCC-HHHHHHHHHHcCCC---cC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-----------EKM--IF----GVAGID-PQRRAELIKVLDID---LS 168 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~----~~~~~~-~~~~~~~l~~l~l~---~~ 168 (348)
... .. .+..+.++.+.......++. ..+ .. ...... ..++.++++.+|+. .+
T Consensus 72 ~~~-~~------~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~ 144 (638)
T PRK10636 72 ETP-AL------PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE 144 (638)
T ss_pred CCC-CC------CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc
Confidence 000 00 00111111111000000000 000 00 011111 34667889999984 36
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+++.+|||||||||+||+||+.+|+||||||||||||+.++.++.++|+++ +.|||+||||++++..+||++++|+
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 789999999999999999999999999999999999999999999988764 5699999999999999999999999
Q ss_pred CCEEe-eecChhHHHH
Q 018938 249 HGKLQ-LAMPMDKVKE 263 (348)
Q Consensus 249 ~G~i~-~~g~~~~~~~ 263 (348)
+|+++ +.|+.+.+..
T Consensus 221 ~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 221 QQSLFEYTGNYSSFEV 236 (638)
T ss_pred CCEEEEecCCHHHHHH
Confidence 99996 5688777654
No 299
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-41 Score=345.72 Aligned_cols=202 Identities=20% Similarity=0.303 Sum_probs=160.6
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||++.|+ ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++..
T Consensus 310 ~~~l~~~~l~~~y~---------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----- 375 (638)
T PRK10636 310 NPLLKMEKVSAGYG---------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI----- 375 (638)
T ss_pred CceEEEEeeEEEeC---------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCE-----
Confidence 45899999999994 3679999999999999999999999999999999999999999999886321
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc-CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~ 183 (348)
.+.|+.+.. .. .+....+....+... .......+.++++.+++. .++++.+|||||||||+
T Consensus 376 ------~igy~~Q~~---~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~ 440 (638)
T PRK10636 376 ------KLGYFAQHQ---LE------FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLV 440 (638)
T ss_pred ------EEEEecCcc---hh------hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHH
Confidence 122222210 00 001111121111111 112234567888999884 36789999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHHH
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVK 262 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 262 (348)
||++|+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 441 La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 441 LALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999999999876 349999999999999999999999999997 788888874
No 300
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.1e-41 Score=307.27 Aligned_cols=188 Identities=22% Similarity=0.298 Sum_probs=144.1
Q ss_pred CceeeeeeeEEe-----CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhh
Q 018938 52 TPLINDFTLTLN-----AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV 126 (348)
Q Consensus 52 ~~~l~~vsl~i~-----~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (348)
.+.+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|.. +.++.
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~------------i~~~~------- 67 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT------------VSYKP------- 67 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCce------------EEEec-------
Confidence 346777777776 799999999999999999999999999999999998741 11111
Q ss_pred hhcCCCccccccchHHHHHh-ccC--CCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccC
Q 018938 127 AFAGFEVPIQMDVSAEKMIF-GVA--GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201 (348)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPt 201 (348)
+........++.+++. ... ........++++.+++. .++++.+|||||||||+|||||+.+|+++||||||
T Consensus 68 ----q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 68 ----QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred ----ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111111223333221 111 11123356788888885 46788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe--eecChhHHH
Q 018938 202 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ--LAMPMDKVK 262 (348)
Q Consensus 202 sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~--~~g~~~~~~ 262 (348)
++||+.++..+.++|++++++.|+|||+||||++++..+||++++|+++..+ ..+++..+.
T Consensus 144 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 144 AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999999999998766899999999999999999999999765433 334555443
No 301
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-40 Score=340.80 Aligned_cols=214 Identities=24% Similarity=0.347 Sum_probs=175.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++ .+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..-
T Consensus 330 ~i~~~~v~f~y~~-------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~--- 399 (571)
T TIGR02203 330 DVEFRNVTFRYPG-------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY--- 399 (571)
T ss_pred eEEEEEEEEEcCC-------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc---
Confidence 5999999999963 235799999999999999999999999999999999999999999999999864221
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC-CCCHHHHHHHHHHcCCC---------cCc----cCCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA-GIDPQRRAELIKVLDID---------LSW----RMHKVS 175 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~---------~~~----~~~~LS 175 (348)
....+++.++|++|++.++.....+++.++.. ..+.++..++++.+++. .+. ....||
T Consensus 400 --------~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LS 471 (571)
T TIGR02203 400 --------TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS 471 (571)
T ss_pred --------CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCC
Confidence 11245677888887776665544455554433 45666777777766542 122 235699
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++||||++.+|++||||||||+||+.+.+.+++.|.++. .++|+|+|||+...+ ..||+|++|++|++++.
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~ 548 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLSTI-EKADRIVVMDDGRIVER 548 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhHHH-HhCCEEEEEeCCEEEee
Confidence 999999999999999999999999999999999999999999874 378999999999876 46999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+.+++.+.
T Consensus 549 g~~~~l~~~ 557 (571)
T TIGR02203 549 GTHNELLAR 557 (571)
T ss_pred CCHHHHHHc
Confidence 999988653
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2e-40 Score=337.29 Aligned_cols=202 Identities=24% Similarity=0.262 Sum_probs=156.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+++|++ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++..
T Consensus 3 ~~i~~~nls~~~~~--------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~------ 68 (552)
T TIGR03719 3 YIYTMNRVSKVVPP--------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI------ 68 (552)
T ss_pred EEEEEeeEEEecCC--------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------
Confidence 47999999999951 3579999999999999999999999999999999999999999999886421
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-h-----------------------------------------
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F----------------------------------------- 146 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------------------------------- 146 (348)
.+.++.+ ....+..+++.+.+ +
T Consensus 69 -----~i~~v~Q-----------~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (552)
T TIGR03719 69 -----KVGYLPQ-----------EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIID 132 (552)
T ss_pred -----EEEEEec-----------cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHH
Confidence 1122211 11111111111100 0
Q ss_pred ccCCC-CHHHHHHHHHHcCCC-cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcC
Q 018938 147 GVAGI-DPQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 224 (348)
Q Consensus 147 ~~~~~-~~~~~~~~l~~l~l~-~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g 224 (348)
....+ ...++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +
T Consensus 133 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~ 208 (552)
T TIGR03719 133 AADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----P 208 (552)
T ss_pred hcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----C
Confidence 00000 012345667777774 36788999999999999999999999999999999999999999999999864 3
Q ss_pred cEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHHHHh
Q 018938 225 ATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKEA 264 (348)
Q Consensus 225 ~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~ 264 (348)
.|||+||||++++..+||++++|++|+++ +.|+.+++.+.
T Consensus 209 ~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 209 GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred CeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 59999999999999999999999999976 67888877653
No 303
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-41 Score=304.66 Aligned_cols=205 Identities=22% Similarity=0.387 Sum_probs=176.9
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCC
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFE 132 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (348)
.+| +++|+++.-.+++|.|+||||||||+|+|+|+.+|+.|.|.++|....+... .+ ++ ...+++++|++|+
T Consensus 13 ~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k-----~i-~l-p~~~RriGYVFQD 84 (352)
T COG4148 13 FAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEK-----GI-FL-PPEKRRIGYVFQD 84 (352)
T ss_pred eEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccC-----Cc-cc-ChhhheeeeEeec
Confidence 344 5899998867999999999999999999999999999999999987643221 11 11 1245788999888
Q ss_pred ccccccchHH-HHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHH
Q 018938 133 VPIQMDVSAE-KMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 209 (348)
Q Consensus 133 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~ 209 (348)
..+++.+++. ++.++.........+++...+|+. ++++|.+|||||||||+|+|||+..|++|+||||.++||...+
T Consensus 85 ARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 85 ARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred cccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 7777777665 444555444556778899999997 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhh
Q 018938 210 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 210 ~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 265 (348)
.+++-+|+++.++.+..|++|||.++++.++||+|++|++|++.+.|+.++++...
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999998754
No 304
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2e-40 Score=339.13 Aligned_cols=214 Identities=21% Similarity=0.301 Sum_probs=174.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++. .++++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.++..-
T Consensus 337 ~i~~~~v~f~y~~~------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~--- 407 (576)
T TIGR02204 337 EIEFEQVNFAYPAR------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL--- 407 (576)
T ss_pred eEEEEEEEEECCCC------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc---
Confidence 59999999999631 125799999999999999999999999999999999999999999999999764321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSg 176 (348)
....+++.++|.+|++.++.....+++.++.+..+.++..++++..++. . ......|||
T Consensus 408 --------~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSg 479 (576)
T TIGR02204 408 --------DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG 479 (576)
T ss_pred --------CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCH
Confidence 1124566788887776665554455555544444555666666665531 1 123457999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++||||++.+|++||||||||+||+.+++.+++.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQG 556 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999999999999874 3799999999998875 69999999999999999
Q ss_pred ChhHHHH
Q 018938 257 PMDKVKE 263 (348)
Q Consensus 257 ~~~~~~~ 263 (348)
+.+++.+
T Consensus 557 ~~~~l~~ 563 (576)
T TIGR02204 557 THAELIA 563 (576)
T ss_pred cHHHHHH
Confidence 9888754
No 305
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.6e-40 Score=306.70 Aligned_cols=198 Identities=23% Similarity=0.311 Sum_probs=148.3
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
..+.|+++|+++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|...
T Consensus 36 ~~~~l~i~nls~~~-----------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~--- 101 (282)
T cd03291 36 DDNNLFFSNLCLVG-----------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS--- 101 (282)
T ss_pred CCCeEEEEEEEEec-----------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEE---
Confidence 34579999999852 4699999999999999999999999999999999999999999999987421
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHK 173 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~ 173 (348)
|+. +...++.....+++.+... .......++++.+++. ....+.+
T Consensus 102 ----------yv~-----------q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~ 159 (282)
T cd03291 102 ----------FSS-----------QFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT 159 (282)
T ss_pred ----------EEe-----------CcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCc
Confidence 111 1111111111112211111 0111112222222221 1234679
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l-~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.+ ..+. .+.|||++||+++++. .||++++|++|++
T Consensus 160 LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~~~-~~d~i~~l~~G~i 236 (282)
T cd03291 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSS 236 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHHHH-hCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999865 4543 3789999999999985 7999999999999
Q ss_pred eeecChhHHHH
Q 018938 253 QLAMPMDKVKE 263 (348)
Q Consensus 253 ~~~g~~~~~~~ 263 (348)
+..|+++++..
T Consensus 237 ~~~g~~~~~~~ 247 (282)
T cd03291 237 YFYGTFSELQS 247 (282)
T ss_pred EEECCHHHHHh
Confidence 99999888764
No 306
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.3e-40 Score=339.61 Aligned_cols=222 Identities=22% Similarity=0.265 Sum_probs=160.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc-
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA- 108 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~- 108 (348)
+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|........
T Consensus 3 ~l~i~~ls~~~~---------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q 73 (635)
T PRK11147 3 LISIHGAWLSFS---------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeeEEEEeC---------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEecc
Confidence 799999999994 4679999999999999999999999999999999999999999999998742110000
Q ss_pred ccccCcccccchhhhhhhhhcC--C-----------Cccccccch-HHHH---HhccCCC-CHHHHHHHHHHcCCCcCcc
Q 018938 109 LTSSGDLSYLGGEWRREVAFAG--F-----------EVPIQMDVS-AEKM---IFGVAGI-DPQRRAELIKVLDIDLSWR 170 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~-~~~~---~~~~~~~-~~~~~~~~l~~l~l~~~~~ 170 (348)
........++.+.......... . .......+. .... +...... ...++.++++.+++..+++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 153 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAA 153 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCc
Confidence 0000011111110000000000 0 000000000 0000 0000111 1345678899999877788
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G 229 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRG 229 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999876 359999999999999999999999999
Q ss_pred EEe-eecChhHHHHh
Q 018938 251 KLQ-LAMPMDKVKEA 264 (348)
Q Consensus 251 ~i~-~~g~~~~~~~~ 264 (348)
+++ +.|+...+...
T Consensus 230 ~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 230 KLVSYPGNYDQYLLE 244 (635)
T ss_pred EEEEecCCHHHHHHH
Confidence 997 45888776543
No 307
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1e-40 Score=282.11 Aligned_cols=144 Identities=33% Similarity=0.460 Sum_probs=129.3
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++|++++|+ +.++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 1 l~~~~l~~~~~---------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~-------- 63 (144)
T cd03221 1 IELENLSKTYG---------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-------- 63 (144)
T ss_pred CEEEEEEEEEC---------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE--------
Confidence 46899999995 3479999999999999999999999999999999999999999999987731
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK 190 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~ 190 (348)
.++|.++ ||+||+||++|||||+.
T Consensus 64 --------------~i~~~~~------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 64 --------------KIGYFEQ------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred --------------EEEEEcc------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 1122211 99999999999999999
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
+|+++||||||++||+.++..+.+.|+++ +.|||++||+++++..+||++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999875 4699999999999999999999999985
No 308
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.1e-40 Score=301.79 Aligned_cols=186 Identities=24% Similarity=0.297 Sum_probs=147.9
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc--c
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ--M 137 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 137 (348)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .++.++|+++..... .
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----------------~~~~i~~v~q~~~~~~~~ 64 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK----------------GWRHIGYVPQRHEFAWDF 64 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH----------------hhCcEEEecccccccCCC
Confidence 6789999999999999999999999999999999999999975310 112344443332221 1
Q ss_pred cchHHHHH-hcc------C-CC---CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCC
Q 018938 138 DVSAEKMI-FGV------A-GI---DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 204 (348)
Q Consensus 138 ~~~~~~~~-~~~------~-~~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgL 204 (348)
..+..+.+ +.. . .. ...++.++++.+++. .+.++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 65 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 65 PISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred CccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 22333322 111 0 01 123456788888886 36678999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 205 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 205 D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
|+.++..+.++|+++++ .|.|||++|||++++..+||+++++ +|+++..++.+++.+
T Consensus 145 D~~~~~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 145 DMPTQELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 99999999999999864 4899999999999999999999999 899999999888754
No 309
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.3e-40 Score=293.96 Aligned_cols=177 Identities=25% Similarity=0.342 Sum_probs=136.1
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... . ...+++.++|++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-----~----~~~~~~~i~~~~ 74 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK-----G----LLERRQRVGLVF 74 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcccccc-----c----hHHHHhhEEEEe
Confidence 4679999999999999999999999999999999999999999999999986521100 0 011234456655
Q ss_pred CCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeecc
Q 018938 131 FEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 200 (348)
Q Consensus 131 ~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEP 200 (348)
++.. .....+..+ +.+.. ..... +++.++++.+++. .++++.+||||||||++|||||+.+|++||||||
T Consensus 75 q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 75 QDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5431 111223333 22211 12221 2456778888885 4678899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938 201 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 237 (348)
Q Consensus 201 tsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 237 (348)
|+|||+.++..+.++|+++.+ .|.|||++|||++++
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~~~ 190 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVDLA 190 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHH-cCCEEEEEeeccccC
Confidence 999999999999999999865 489999999998763
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.6e-40 Score=333.67 Aligned_cols=202 Identities=22% Similarity=0.289 Sum_probs=160.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 322 ~~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~----- 387 (556)
T PRK11819 322 DKVIEAENLSKSFG---------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETV----- 387 (556)
T ss_pred CeEEEEEeEEEEEC---------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce-----
Confidence 35899999999994 3579999999999999999999999999999999999999999999884310
Q ss_pred cccccCcccccchhhhhhhhhcCCCc-cccccchHHHHH-hcc--CC--CCHHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMI-FGV--AG--IDPQRRAELIKVLDID---LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGq 178 (348)
.+ +|+++.. .+...+++.+.+ +.. .. ........+++.+++. .++++.+|||||
T Consensus 388 ------~i-----------~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 450 (556)
T PRK11819 388 ------KL-----------AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGE 450 (556)
T ss_pred ------EE-----------EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHH
Confidence 12 2222221 122223333322 211 11 1123345688889884 367899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC-CEEe-eec
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH-GKLQ-LAM 256 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~-G~i~-~~g 256 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|.++ +.|||+||||++++..+||++++|++ |++. ..|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF----PGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecC
Confidence 99999999999999999999999999999999999999876 23899999999999999999999986 7876 578
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++.+.
T Consensus 527 ~~~~~~~~ 534 (556)
T PRK11819 527 NFQEYEED 534 (556)
T ss_pred CHHHHHHH
Confidence 87776554
No 311
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.1e-40 Score=333.75 Aligned_cols=201 Identities=22% Similarity=0.295 Sum_probs=158.4
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 320 ~~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~----- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFG---------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETV----- 385 (552)
T ss_pred CeEEEEeeEEEEEC---------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCce-----
Confidence 45899999999994 3579999999999999999999999999999999999999999999884320
Q ss_pred cccccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hccC--CC--CHHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGVA--GI--DPQRRAELIKVLDID---LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~--~~~~~~~~l~~l~l~---~~~~~~~LSgGq 178 (348)
.+ +|+++... .....++.+.+ +... .. ......++++.+++. .++++.+|||||
T Consensus 386 ------~i-----------~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 448 (552)
T TIGR03719 386 ------KL-----------AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGE 448 (552)
T ss_pred ------EE-----------EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHH
Confidence 12 22222211 22223333322 2211 11 122345688888884 367899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC-CEEe-eec
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH-GKLQ-LAM 256 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~-G~i~-~~g 256 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|+++ +.|||+||||++++..+||++++|++ |++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF----AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCC
Confidence 99999999999999999999999999999999999999876 23899999999999999999999986 5876 557
Q ss_pred ChhHHHH
Q 018938 257 PMDKVKE 263 (348)
Q Consensus 257 ~~~~~~~ 263 (348)
+.+++.+
T Consensus 525 ~~~~~~~ 531 (552)
T TIGR03719 525 NYSEYEE 531 (552)
T ss_pred CHHHHHH
Confidence 7766543
No 312
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6e-40 Score=340.22 Aligned_cols=200 Identities=23% Similarity=0.331 Sum_probs=158.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||++.|++ ...+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++..
T Consensus 507 ~~L~~~~ls~~y~~--------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~------ 572 (718)
T PLN03073 507 PIISFSDASFGYPG--------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV------ 572 (718)
T ss_pred ceEEEEeeEEEeCC--------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce------
Confidence 68999999999952 3569999999999999999999999999999999999999999999876421
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHH--Hh-ccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM--IF-GVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv 182 (348)
.+.|+.+ ............. .. .......+++.++++.+++. .++++.+|||||||||
T Consensus 573 -----~igyv~Q-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv 636 (718)
T PLN03073 573 -----RMAVFSQ-----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 636 (718)
T ss_pred -----eEEEEec-----------cccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH
Confidence 1222221 1100001111101 10 11223455677889999985 3678999999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHH
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKV 261 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 261 (348)
+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+.+++
T Consensus 637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999999998888754 349999999999999999999999999998 67776655
Q ss_pred H
Q 018938 262 K 262 (348)
Q Consensus 262 ~ 262 (348)
.
T Consensus 713 ~ 713 (718)
T PLN03073 713 K 713 (718)
T ss_pred H
Confidence 3
No 313
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.9e-40 Score=334.23 Aligned_cols=202 Identities=20% Similarity=0.302 Sum_probs=161.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++|+|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 322 ~i~~~~v~f~y~~--------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-- 391 (547)
T PRK10522 322 TLELRNVTFAYQD--------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ-- 391 (547)
T ss_pred eEEEEEEEEEeCC--------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC--
Confidence 6999999999952 356999999999999999999999999999999999999999999999998653211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcC-----c--cCCCCCHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLS-----W--RMHKVSDGQRRRV 182 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----~--~~~~LSgGqrQRv 182 (348)
...+++.+++++++..++.....++ ....+.+...++++.+++... . ....||||||||+
T Consensus 392 ---------~~~~~~~i~~v~q~~~lf~~ti~~n----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl 458 (547)
T PRK10522 392 ---------PEDYRKLFSAVFTDFHLFDQLLGPE----GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL 458 (547)
T ss_pred ---------HHHHhhheEEEecChhHHHHhhccc----cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHH
Confidence 1234566777766554433221111 112234556677777776421 1 1358999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
+|||||+++|++|||||||++||+++...+.+.+.+..++.++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999988765445899999999998764 7999999999999876
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.7e-40 Score=292.39 Aligned_cols=188 Identities=15% Similarity=0.275 Sum_probs=145.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++|++++|+ ++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~---------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-- 68 (195)
T PRK13541 1 MLSLHQLQFNIE---------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-- 68 (195)
T ss_pred CeEEEEeeEEEC---------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh--
Confidence 478999999994 345555 99999999999999999999999999999999999999999997542110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC 185 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA 185 (348)
...++|.++........+..+.+ +.... ...+.+.++++.+++. .++.+.+||||||||++||
T Consensus 69 -------------~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la 135 (195)
T PRK13541 69 -------------KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIA 135 (195)
T ss_pred -------------hhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHH
Confidence 01123333332222333433322 21111 1234566778888875 3667899999999999999
Q ss_pred HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
|||+.+|++|||||||++||+.++..+.++|++.. +.|.|||++||+++++.. ||.+
T Consensus 136 ~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 136 RLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCccccch-hhee
Confidence 99999999999999999999999999999998754 458999999999998875 6655
No 315
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=9.7e-40 Score=326.01 Aligned_cols=211 Identities=31% Similarity=0.397 Sum_probs=157.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++|++++|+ .+++|+++||+|.+|+++||||+||||||||||+|+|.+.|++|+|...+..
T Consensus 2 ~~i~~~~ls~~~g---------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~------ 66 (530)
T COG0488 2 SMITLENLSLAYG---------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL------ 66 (530)
T ss_pred ceEEEeeeEEeeC---------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc------
Confidence 4799999999994 5789999999999999999999999999999999999999999999886521
Q ss_pred ccccCcccccchhh--------hhhhhhcCCC---------------ccccccchHHHH---HhccCCCC-HHHHHHHHH
Q 018938 109 LTSSGDLSYLGGEW--------RREVAFAGFE---------------VPIQMDVSAEKM---IFGVAGID-PQRRAELIK 161 (348)
Q Consensus 109 ~~~~~~~~~~~~~~--------~~~~~~~~~~---------------~~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~ 161 (348)
.++++.+.. ...+ +.... ...........+ ......+. ..++..++.
T Consensus 67 -----~v~~l~Q~~~~~~~~tv~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~ 140 (530)
T COG0488 67 -----RVGYLSQEPPLDPEKTVLDYV-IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL 140 (530)
T ss_pred -----eEEEeCCCCCcCCCccHHHHH-HhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh
Confidence 011111100 0000 00000 000000000000 00011122 245567777
Q ss_pred HcCCCc-CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh
Q 018938 162 VLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW 240 (348)
Q Consensus 162 ~l~l~~-~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~ 240 (348)
.+++.. ++++++||||||.||+||+||+.+|++||||||||+||..+..++.++|+++ .| |||+||||.+|+..+
T Consensus 141 gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V 216 (530)
T COG0488 141 GLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNV 216 (530)
T ss_pred cCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHH
Confidence 788765 6889999999999999999999999999999999999999999999999864 36 999999999999999
Q ss_pred CCEEEEEcCCEEe-eecChhHHHHh
Q 018938 241 PSHIVYVAHGKLQ-LAMPMDKVKEA 264 (348)
Q Consensus 241 ~d~v~~l~~G~i~-~~g~~~~~~~~ 264 (348)
|++|+.++.|++. +.|+.+.+.+.
T Consensus 217 ~t~I~~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 217 ATHILELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred hhheEEecCCceeEecCCHHHHHHH
Confidence 9999999999885 55788776554
No 316
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.5e-40 Score=287.36 Aligned_cols=158 Identities=23% Similarity=0.277 Sum_probs=134.5
Q ss_pred eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccC
Q 018938 34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113 (348)
Q Consensus 34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~ 113 (348)
.||+|+|+ ++.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..+
T Consensus 4 ~~l~~~~~---------~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i---------- 63 (177)
T cd03222 4 PDCVKRYG---------VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP---------- 63 (177)
T ss_pred CCeEEEEC---------CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE----------
Confidence 58999994 46788884 99999999999999999999999999999999999999987521
Q ss_pred cccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCc
Q 018938 114 DLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFK 193 (348)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~ 193 (348)
++.++.. .||||||||++|||||+.+|+
T Consensus 64 -------------~~~~q~~---------------------------------------~LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 64 -------------VYKPQYI---------------------------------------DLSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred -------------EEEcccC---------------------------------------CCCHHHHHHHHHHHHHhcCCC
Confidence 1111100 099999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee--cChhHHHH
Q 018938 194 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA--MPMDKVKE 263 (348)
Q Consensus 194 lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~--g~~~~~~~ 263 (348)
++||||||++||+.++..+.++|.+++++.+.|||++|||++++..+||++++|+++-.+.. +++...++
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 163 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE 163 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence 99999999999999999999999998755348999999999999999999999998766544 55554443
No 317
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.4e-40 Score=334.70 Aligned_cols=195 Identities=24% Similarity=0.270 Sum_probs=157.3
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++|++++|+ + ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ .
T Consensus 338 ~~~l~~~~ls~~~~---------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~------ 400 (590)
T PRK13409 338 ETLVEYPDLTKKLG---------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L------ 400 (590)
T ss_pred ceEEEEcceEEEEC---------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e------
Confidence 46899999999994 2 35999999999999999999999999999999999999999998774 1
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-ccCCC-CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVAGI-DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~ 183 (348)
.++|+ ++........++.+++. ..... ......++++.+++. .++++.+|||||||||+
T Consensus 401 ------~i~y~-----------~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRva 463 (590)
T PRK13409 401 ------KISYK-----------PQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVA 463 (590)
T ss_pred ------eEEEe-----------cccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHH
Confidence 12222 22211122333433321 11111 123456788889886 47789999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||+||||++++..+|||+++|+ |++...|.
T Consensus 464 iAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 99999999999999999999999999999999999987678999999999999999999999996 47776665
No 318
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.4e-39 Score=292.74 Aligned_cols=185 Identities=15% Similarity=0.202 Sum_probs=143.1
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE-EcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK-VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~-i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
.+|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|. ++|.... ++ +
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-------------~~-----------~ 56 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------------LG-----------A 56 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-------------cc-----------c
Confidence 379999999999999999999999999999999999999999986 6654210 00 0
Q ss_pred CccccccchHHHHH-h--ccCCCCHHH-HHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCC
Q 018938 132 EVPIQMDVSAEKMI-F--GVAGIDPQR-RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 205 (348)
Q Consensus 132 ~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD 205 (348)
...+...++..+++ + ...+..... ...+.+.+++. .++++.+||||||||++|||||+.+|+++||||||++||
T Consensus 57 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD 136 (213)
T PRK15177 57 NSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGD 136 (213)
T ss_pred ccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence 01111222333322 1 111223222 22333445554 366789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 206 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
+.++..+.+.+.+..+ +.|+|++||+++++..+||++++|++|++++.++.++...
T Consensus 137 ~~~~~~~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 137 NATQLRMQAALACQLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHHHhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 9999999998866543 4689999999999999999999999999999998887753
No 319
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-40 Score=276.85 Aligned_cols=233 Identities=25% Similarity=0.324 Sum_probs=178.8
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.|.+++.+|||.|+ .....++|||++.+||+.+|+|+||||||||++||+|-+.|+.|+|.+.-..-. ..
T Consensus 4 ~PLL~V~~lsk~Yg---------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~-~~ 73 (258)
T COG4107 4 KPLLSVSGLSKLYG---------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQ-PR 73 (258)
T ss_pred CcceeehhhhhhhC---------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCC-ch
Confidence 46899999999995 456899999999999999999999999999999999999999999987432100 00
Q ss_pred cccccCcccccchhhhhhhhhcCCCccc--cccchH-----HH-HHhccC--CCCHHHHHHHHHHcCCCc---CccCCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPI--QMDVSA-----EK-MIFGVA--GIDPQRRAELIKVLDIDL---SWRMHKV 174 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~-~~~~~~--~~~~~~~~~~l~~l~l~~---~~~~~~L 174 (348)
.+....+.. -..-.+..++|+.+.+.. .+..++ +. +..+.. +.-.....++++.+.++. +..|.++
T Consensus 74 dl~~msEae-RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtF 152 (258)
T COG4107 74 DLYTMSEAE-RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTF 152 (258)
T ss_pred hHhhhchHH-HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccccc
Confidence 000000000 000123456666443322 122221 11 111211 112344567888888864 5578999
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||+||+.|||-|+..|+++++||||.|||..-+..++++++.+..+.|.++++||||+..+.-+++|.++|++|++++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHhhhhhhHH
Q 018938 255 AMPMDKVKEASKLSLMR 271 (348)
Q Consensus 255 ~g~~~~~~~~~~~~~~~ 271 (348)
.|-++.+...+.+.+.+
T Consensus 233 ~GLTDrvLDDP~hPYTQ 249 (258)
T COG4107 233 SGLTDRVLDDPHHPYTQ 249 (258)
T ss_pred cccccccccCCCCchHH
Confidence 99999998887776544
No 320
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.8e-40 Score=312.44 Aligned_cols=184 Identities=23% Similarity=0.344 Sum_probs=150.1
Q ss_pred EECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc
Q 018938 70 LVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV 148 (348)
Q Consensus 70 liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (348)
|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++.++|++++..++..++..++ .++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-------------~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 67 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-------------PHLRHINMVFQSYALFPHMTVEENVAFGL 67 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-------------HHHCCEEEEecCccccCCCcHHHHHHHHH
Confidence 68999999999999999999999999999998653211 112345666555545545555443 2222
Q ss_pred --CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHH
Q 018938 149 --AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 220 (348)
Q Consensus 149 --~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~ 220 (348)
.+.. .+++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 68 KMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 1222 13456788888886 477899999999999999999999999999999999999999999999999998
Q ss_pred HhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhh
Q 018938 221 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 221 ~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 266 (348)
++.|.|||+||||++++..+||++++|++|+++..|+++++...+.
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 7779999999999999999999999999999999999999876543
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.2e-39 Score=336.37 Aligned_cols=200 Identities=22% Similarity=0.345 Sum_probs=158.2
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+++|+ ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+ |..+
T Consensus 317 ~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~---- 382 (635)
T PRK11147 317 KIVFEMENVNYQID---------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL---- 382 (635)
T ss_pred CceEEEeeeEEEEC---------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----
Confidence 45899999999994 357999999999999999999999999999999999999999999988 4311
Q ss_pred cccccCcccccchhhhhhhhhcCCCc-cccccchHHHHH-hccCCC--C--HHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMI-FGVAGI--D--PQRRAELIKVLDID---LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--~--~~~~~~~l~~l~l~---~~~~~~~LSgGq 178 (348)
.+. |.++.. .+....++.+.+ +..... . ...+.+++..+++. .++++.+|||||
T Consensus 383 ------~i~-----------y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 445 (635)
T PRK11147 383 ------EVA-----------YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGE 445 (635)
T ss_pred ------EEE-----------EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHH
Confidence 122 222211 122223333322 211111 1 33456778888874 367899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-CCEEee-ec
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-HGKLQL-AM 256 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i~~-~g 256 (348)
||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+||++++|+ +|++.. .|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999988764 4599999999999999999999997 899865 57
Q ss_pred ChhHHH
Q 018938 257 PMDKVK 262 (348)
Q Consensus 257 ~~~~~~ 262 (348)
+.+++.
T Consensus 522 ~y~~y~ 527 (635)
T PRK11147 522 GYHDAR 527 (635)
T ss_pred CHHHHH
Confidence 777764
No 322
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.7e-39 Score=330.64 Aligned_cols=208 Identities=20% Similarity=0.268 Sum_probs=160.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|++.++ ..+++|+|+||++++|++++|+||||||||||+++|+|++.|++|+|.++|.++....
T Consensus 336 ~~i~~~~v~f~y~~~~~----~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~- 410 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG----SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS- 410 (555)
T ss_pred ceEEEEEEEEEeCCCCC----CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-
Confidence 35999999999963100 0236999999999999999999999999999999999999999999999998653211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCc--C------ccCCCCCHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL--S------WRMHKVSDGQRR 180 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~------~~~~~LSgGqrQ 180 (348)
...+++.+++++++..++.....++. ....+.++..++++.+++.. . .....|||||||
T Consensus 411 ----------~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 ----------RDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred ----------HHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 12345667777665544433322221 12223455667788877642 1 123679999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|++|||||+.+|++|||||||++||+.+.+.+.+.+.+..+..++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999988664322345899999999998764 7999999999999865
No 323
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.6e-40 Score=338.40 Aligned_cols=197 Identities=19% Similarity=0.269 Sum_probs=160.5
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC--CceEEEcCeeccccccccccCcccccchhhhhhhhh
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE--PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF 128 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~--~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
++.+|+|+||++++||+++|+||||||||||+++|+|..+|+ +|+|.++|++... ..++.++|
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---------------~~~~~i~y 144 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---------------QILKRTGF 144 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---------------hhccceEE
Confidence 467999999999999999999999999999999999998875 8999999976421 11234566
Q ss_pred cCCCccccccchHHHHH-hc--c--C-CCCH----HHHHHHHHHcCCCc-------CccCCCCCHHHHHHHHHHHHHccC
Q 018938 129 AGFEVPIQMDVSAEKMI-FG--V--A-GIDP----QRRAELIKVLDIDL-------SWRMHKVSDGQRRRVQICMGLLKP 191 (348)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-~~--~--~-~~~~----~~~~~~l~~l~l~~-------~~~~~~LSgGqrQRv~lAraL~~~ 191 (348)
+.++......+++.+.+ +. . . .... ++++++++.+++.. ++.+..|||||||||+||++|+.+
T Consensus 145 v~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~ 224 (659)
T PLN03211 145 VTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 224 (659)
T ss_pred ECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence 65555554455555433 21 1 1 1222 23567888888852 235678999999999999999999
Q ss_pred CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 192 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 192 P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|++++.|+++++.+
T Consensus 225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999999999999875 5999999999998 5889999999999999999999988764
No 324
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-39 Score=358.93 Aligned_cols=216 Identities=21% Similarity=0.261 Sum_probs=178.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC------------------
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV------------------ 91 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~------------------ 91 (348)
.|+++||+|+|++. .+.++|+|+||+|++|+++||+||||||||||+++|+|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~ 1238 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTN 1238 (1466)
T ss_pred eEEEEEEEEECCCC------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccc
Confidence 59999999999631 135799999999999999999999999999999999999998
Q ss_pred ------------------------------------CCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccc
Q 018938 92 ------------------------------------EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPI 135 (348)
Q Consensus 92 ------------------------------------~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (348)
++|+|.++|.++..- ....+++.+++++|++.+
T Consensus 1239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~-----------~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1239 EQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY-----------NLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhC-----------CHHHHHhhccEeCCCCcc
Confidence 589999999875321 123567889999888777
Q ss_pred cccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC
Q 018938 136 QMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV 202 (348)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts 202 (348)
+.....+++.++....+.+.+.++++..++. .+ .....||||||||++|||||+++|+|||||||||
T Consensus 1308 F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTS 1387 (1466)
T PTZ00265 1308 FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATS 1387 (1466)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 6655556666665555666666666665431 12 2346799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC----CEEe-eecChhHHHH
Q 018938 203 DLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH----GKLQ-LAMPMDKVKE 263 (348)
Q Consensus 203 gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~~ 263 (348)
+||+++.+.+.+.|.++....++|+|+|||++..+. .||+|++|++ |+++ +.|+.+++.+
T Consensus 1388 aLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1388 SLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999999999999874234899999999999886 5999999999 9955 8999999875
No 325
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.2e-40 Score=301.94 Aligned_cols=199 Identities=21% Similarity=0.229 Sum_probs=148.0
Q ss_pred eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE-----------EcCee
Q 018938 34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK-----------VLGRS 102 (348)
Q Consensus 34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~-----------i~G~~ 102 (348)
.+|+|+|+. .+.+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|. ++|.+
T Consensus 4 ~~~~~~y~~--------~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 4 DEPVHRYGP--------NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred cCcceeecC--------cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCch
Confidence 488999952 2469999995 999999999999999999999999999999999996 44433
Q ss_pred ccccccccccCcccccchhhh--hhhhhcCCCccccccchHHHHHhccCCC-CHHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938 103 AFHDTALTSSGDLSYLGGEWR--REVAFAGFEVPIQMDVSAEKMIFGVAGI-DPQRRAELIKVLDID--LSWRMHKVSDG 177 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgG 177 (348)
+.... ....+ ..+++..+............+....... ......++++.+++. .++.+.+||||
T Consensus 75 ~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 143 (255)
T cd03236 75 LQNYF-----------TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGG 143 (255)
T ss_pred hhhhh-----------HHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHH
Confidence 21100 00000 0122322222222111112221111111 124567788889886 36778999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||++|||||+.+|+++||||||++||+.++..+.++|+++.+ .++|||++|||++++..+||+|++|+ |++.+
T Consensus 144 ~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 99999999999999999999999999999999999999999875 48999999999999999999999995 55654
No 326
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.9e-40 Score=277.33 Aligned_cols=233 Identities=17% Similarity=0.306 Sum_probs=181.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
+.++++||+|.|....+-.......+++.|||++++|+.++|||.||||||||.|+|+|.++|++|+|.++|+....+..
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 47899999999843211000123568999999999999999999999999999999999999999999999986532211
Q ss_pred ccccCcccccchhhhhhhh--hcCCCccccccchHHHHHhc---c-CCCCH----HHHHHHHHHcCCCc---CccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVA--FAGFEVPIQMDVSAEKMIFG---V-AGIDP----QRRAELIKVLDIDL---SWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~-~~~~~----~~~~~~l~~l~l~~---~~~~~~LS 175 (348)
.+ ..+.+. |++....+++.+....++-. + ..++. +++.+.+..+|+-. +.+++.||
T Consensus 83 -------~~----R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la 151 (267)
T COG4167 83 -------SF----RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLA 151 (267)
T ss_pred -------Hh----hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcC
Confidence 11 012222 33222233333333332211 1 12222 34556677788743 56799999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
-||||||+|||||+.+|+++|.||..++||...+.++.+++.++.++.|.+.|+|+.++..+..++|.|+||++|++++.
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHhhhhhhHHH
Q 018938 256 MPMDKVKEASKLSLMRT 272 (348)
Q Consensus 256 g~~~~~~~~~~~~~~~~ 272 (348)
|.+.+++..+.+...+.
T Consensus 232 G~t~~v~a~P~~~~TkR 248 (267)
T COG4167 232 GSTADVLASPLHELTKR 248 (267)
T ss_pred CChhhhhcCCccHHHHH
Confidence 99999999887765543
No 327
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8e-39 Score=355.24 Aligned_cols=214 Identities=18% Similarity=0.237 Sum_probs=177.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++ +..++|+|+||+|++||.+||+|+||||||||+++|.|++.|++|+|.++|.++..-
T Consensus 1234 ~I~f~nVsf~Y~~-------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i--- 1303 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKF--- 1303 (1495)
T ss_pred cEEEEEEEEEECC-------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhC---
Confidence 5999999999953 235799999999999999999999999999999999999999999999999875321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg 176 (348)
-...+++.+++++|++.++.. +..+++......+.+++.++++..++. .+ .....|||
T Consensus 1304 --------~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1374 (1495)
T PLN03232 1304 --------GLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSV 1374 (1495)
T ss_pred --------CHHHHHhhcEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCH
Confidence 113567888999888766655 444443222234556666666665542 12 23457999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+++|+|||||||||+||+++.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 1375 GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232 1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYD 1451 (1495)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999864 47999999999999976 9999999999999999
Q ss_pred ChhHHHHhh
Q 018938 257 PMDKVKEAS 265 (348)
Q Consensus 257 ~~~~~~~~~ 265 (348)
+++++.+..
T Consensus 1452 t~~eLl~~~ 1460 (1495)
T PLN03232 1452 SPQELLSRD 1460 (1495)
T ss_pred CHHHHHhCC
Confidence 999998643
No 328
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4.3e-39 Score=326.20 Aligned_cols=197 Identities=26% Similarity=0.373 Sum_probs=160.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+|+|++ +.+++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..-
T Consensus 320 ~i~~~~v~f~y~~-------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~--- 389 (529)
T TIGR02857 320 SLEFSGLSVAYPG-------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA--- 389 (529)
T ss_pred eEEEEEEEEECCC-------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC---
Confidence 6999999999963 235799999999999999999999999999999999999999999999999865321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSg 176 (348)
....+++.+++++|+..++.....+++.++....+.++..++++..++. . .....+|||
T Consensus 390 --------~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 461 (529)
T TIGR02857 390 --------DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG 461 (529)
T ss_pred --------CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence 1134667788887776665544444554444444556666666665542 1 223567999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
|||||++|||||+++|++||||||||+||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH-hCCEEEeC
Confidence 99999999999999999999999999999999999999999874 4799999999999885 69999875
No 329
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=278.09 Aligned_cols=217 Identities=18% Similarity=0.266 Sum_probs=173.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcC-eeccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLG-RSAFHDT 107 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G-~~~~~~~ 107 (348)
++|+++||+++|+ +..||+++||+|.+||.-+|||||||||||++.+|+|.-+|+.|++.++| .++..-.
T Consensus 4 ~iL~~~~vsVsF~---------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSFG---------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEEc---------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC
Confidence 5799999999995 47899999999999999999999999999999999999999999999998 4332211
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHh--------------c-cCCCCHHHHHHHHHHcCCCc--Ccc
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF--------------G-VAGIDPQRRAELIKVLDIDL--SWR 170 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~l~~l~l~~--~~~ 170 (348)
. ..+ .+..++--+|.+..+..+++.+++. . .......+++++++..++.. ++.
T Consensus 75 e----~~I------Ar~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~ 144 (249)
T COG4674 75 E----HRI------ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL 144 (249)
T ss_pred H----HHH------HHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh
Confidence 0 011 1122232233333444444433220 0 11112346788999989864 556
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
...||-||||++.|++.++++|++|+||||++|+-.....+.-++|+.++. +.+|++|.|||.|+..++++|.+|++|
T Consensus 145 A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G 222 (249)
T COG4674 145 AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEG 222 (249)
T ss_pred hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEecc
Confidence 789999999999999999999999999999999999999999999999964 679999999999999999999999999
Q ss_pred EEeeecChhHHHHhhh
Q 018938 251 KLQLAMPMDKVKEASK 266 (348)
Q Consensus 251 ~i~~~g~~~~~~~~~~ 266 (348)
.+.+.|+.+++...+.
T Consensus 223 ~VL~EGsld~v~~dp~ 238 (249)
T COG4674 223 SVLAEGSLDEVQNDPK 238 (249)
T ss_pred ceeecccHHHhhcCcc
Confidence 9999999999876544
No 330
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.8e-39 Score=355.60 Aligned_cols=213 Identities=16% Similarity=0.220 Sum_probs=176.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|.+ +..++|+|+||+|++||.+||+|+||||||||+++|.|++.|++|+|.++|.++..-
T Consensus 1237 ~I~f~nVsf~Y~~-------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i--- 1306 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF--- 1306 (1622)
T ss_pred cEEEEEEEEEeCC-------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC---
Confidence 5999999999953 235799999999999999999999999999999999999999999999999875321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg 176 (348)
-...+|+.+++++|++.++.. +..+++......+.+++.++++..++. .+ .....|||
T Consensus 1307 --------~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1307 --------GLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred --------CHHHHHhccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 123567888999888776655 444443222234556666666665441 12 23457999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+++|+|||||||||+||+++...|.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+|++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 37999999999999976 9999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+++++.+.
T Consensus 1455 t~~eLl~~ 1462 (1622)
T PLN03130 1455 TPENLLSN 1462 (1622)
T ss_pred CHHHHHhC
Confidence 99999864
No 331
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.7e-39 Score=330.70 Aligned_cols=220 Identities=23% Similarity=0.361 Sum_probs=172.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++|++++|+... +..++|+++||+|++||+++|+||||||||||+++|+|+++|++|++.++|+++.....
T Consensus 3 ~~l~~~nl~~~y~~~~-----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 3 ALLELKDIRRSYPSGE-----EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDA 77 (648)
T ss_pred cEEEEeeEEEEeCCCC-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCH
Confidence 4799999999995210 12469999999999999999999999999999999999999999999999986432110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
. .+ ....++.++|.+++..++...+..+ +.+. ..+.. .+++.++++.+++. .++.+.+|||||+
T Consensus 78 ~----~~---~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~ 150 (648)
T PRK10535 78 D----AL---AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQ 150 (648)
T ss_pred H----HH---HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHH
Confidence 0 00 0001234566655544444444333 2211 11111 23456788888886 3678899999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
||++|||||+.+|++|||||||+|||+.+++.+.++|+++++ .|.|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 151 qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQ 228 (648)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCcc
Confidence 999999999999999999999999999999999999999864 5899999999999886 69999999999999999988
Q ss_pred HHH
Q 018938 260 KVK 262 (348)
Q Consensus 260 ~~~ 262 (348)
+..
T Consensus 229 ~~~ 231 (648)
T PRK10535 229 EKV 231 (648)
T ss_pred ccc
Confidence 764
No 332
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.1e-39 Score=353.45 Aligned_cols=203 Identities=19% Similarity=0.292 Sum_probs=158.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEc-Ceecccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL-GRSAFHDTA 108 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~-G~~~~~~~~ 108 (348)
.|+++||+|+|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.++ |.++...
T Consensus 382 ~I~~~nVsf~Y~~~------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~-- 453 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-- 453 (1466)
T ss_pred cEEEEEEEEEcCCC------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC--
Confidence 59999999999631 12479999999999999999999999999999999999999999999995 5543110
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC---------------------------------------
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA--------------------------------------- 149 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 149 (348)
....+++.+++++|+..++.....+++.++..
T Consensus 454 ---------~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1466)
T PTZ00265 454 ---------NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLND 524 (1466)
T ss_pred ---------CHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhh
Confidence 01235667888877655554332333333321
Q ss_pred ------------------CCCHHHHHHHHHHcCCC-------------cCccCCCCCHHHHHHHHHHHHHccCCcEEEee
Q 018938 150 ------------------GIDPQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198 (348)
Q Consensus 150 ------------------~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLD 198 (348)
..+.+++.++++.+++. ......+||||||||++|||||+.+|+|||||
T Consensus 525 ~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLD 604 (1466)
T PTZ00265 525 MSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD 604 (1466)
T ss_pred cccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 01223445555555442 13456789999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 199 EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
|||++||+.++..+.+.|.++.++.|+|+|+|||+++.+ ..||+|++|++|
T Consensus 605 EpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 605 EATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 999999999999999999998654589999999999998 579999999986
No 333
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=100.00 E-value=1.2e-38 Score=274.85 Aligned_cols=248 Identities=69% Similarity=1.142 Sum_probs=220.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
+..|++.++.|+|+. ..+++-|+|++++.|....++|.||||||||||+|+|-.....|.|.+.|.+.+.+.
T Consensus 11 ~~aievsgl~f~y~~--------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV--------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDT 82 (291)
T ss_pred cceEEEeccEEeccc--------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccc
Confidence 457999999999973 568999999999999999999999999999999999988888899999999999988
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG 187 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra 187 (348)
.....+.+.|++.+|.+..++.. ++|++.+++++.++++..+.+.++.+++++.++++..++.+.+|-|||+||.||+.
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMG 161 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMG 161 (291)
T ss_pred cccccCceeEecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHh
Confidence 88888899999999988877764 78888899999999988877788889999999999999999999999999999999
Q ss_pred HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhhh
Q 018938 188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 267 (348)
Q Consensus 188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 267 (348)
|++.-++|+|||-|-.||..++..+++++++-++++|.||++.||..+-++.+.++++.|..|+++...+.+.+.+-...
T Consensus 162 LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~~~~ 241 (291)
T KOG2355|consen 162 LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEFSTS 241 (291)
T ss_pred cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986665555443222
Q ss_pred -hhHHHHHHHhhhhhHHH
Q 018938 268 -SLMRTVESWLRKERDEE 284 (348)
Q Consensus 268 -~~~~~~~~~~~~~~~~~ 284 (348)
.++...+.|++++.+..
T Consensus 242 ~nl~s~veswlr~E~k~~ 259 (291)
T KOG2355|consen 242 PNLLSTVESWLRKENKNN 259 (291)
T ss_pred chHHHHHHHHHHhhhhhh
Confidence 34455667877554433
No 334
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.1e-39 Score=323.84 Aligned_cols=183 Identities=27% Similarity=0.414 Sum_probs=153.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+|+|++ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 334 ~I~~~~vsf~Y~~--------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~---- 401 (529)
T TIGR02868 334 TLELRDLSFGYPG--------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS---- 401 (529)
T ss_pred eEEEEEEEEecCC--------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh----
Confidence 5999999999963 3469999999999999999999999999999999999999999999999986532
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg 176 (348)
+ ...+++.+++++|+..++.....+++.++.+..+.++..++++..++. .+ .....|||
T Consensus 402 -------~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 402 -------L-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred -------H-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 1 245678899998887776665556666655555667777777776652 12 22356999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 234 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~ 234 (348)
|||||++|||||+.+|++||||||||+||+++...+.+.|.++. .++|+|+|||++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 99999999999999999999999999999999999999998763 478999999984
No 335
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-38 Score=334.37 Aligned_cols=215 Identities=24% Similarity=0.357 Sum_probs=182.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
-|+++||+|+||.. .+.++|+|+||+|++|+.+||||||||||||.+.+|-.++.|+.|.|.+||.++..-
T Consensus 987 ~I~~~~V~F~YPsR------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l--- 1057 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL--- 1057 (1228)
T ss_pred EEEEeeeEeeCCCC------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC---
Confidence 49999999999852 357899999999999999999999999999999999999999999999999875321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-------CC--c----CccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-------ID--L----SWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~--~----~~~~~~LSg 176 (348)
....+|++++.+.|++.++...-.+++.++....+.+++.++++.-+ ++ . ..+-.+|||
T Consensus 1058 --------nl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1058 --------NLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred --------CHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 12346788999988877776666677778743456666655555433 22 2 234568999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||+|||||++++|+||||||.||+||.++.+.+.+.|.+.. .|+|.|+|.|.+..+.. ||.|+|+++|+|++.|
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CCEEEEEECCEEEecc
Confidence 99999999999999999999999999999999999999999874 48999999999999975 9999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+-+++.+.
T Consensus 1207 tH~~L~~~ 1214 (1228)
T KOG0055|consen 1207 THDELLAK 1214 (1228)
T ss_pred cHHHHHhC
Confidence 99999873
No 336
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.5e-38 Score=349.35 Aligned_cols=213 Identities=16% Similarity=0.191 Sum_probs=177.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++ +..++|+||||+|++||.+||+|+||||||||+++|.|++.|++|+|.++|.++..-
T Consensus 1308 ~I~f~nVsf~Y~~-------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i--- 1377 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY--- 1377 (1560)
T ss_pred eEEEEEEEEEeCC-------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC---
Confidence 5999999999963 335699999999999999999999999999999999999999999999999875321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cCc----cCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LSW----RMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~LSg 176 (348)
-...+++.+++++|+..++.. +..+++......+.+++.++++..++. .+. ....|||
T Consensus 1378 --------~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSg 1448 (1560)
T PTZ00243 1378 --------GLRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSV 1448 (1560)
T ss_pred --------CHHHHHhcceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCH
Confidence 123567889999888766654 454444332344566777777776652 122 2357999
Q ss_pred HHHHHHHHHHHHccC-CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 177 GQRRRVQICMGLLKP-FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 177 GqrQRv~lAraL~~~-P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||++|||||+++ |+|||||||||+||+++.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+|++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEE
Confidence 999999999999995 89999999999999999999999998864 37899999999998865 999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+++++.+.
T Consensus 1526 Gt~~eLl~~ 1534 (1560)
T PTZ00243 1526 GSPRELVMN 1534 (1560)
T ss_pred CCHHHHHhC
Confidence 999999764
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-38 Score=271.31 Aligned_cols=156 Identities=35% Similarity=0.495 Sum_probs=133.2
Q ss_pred EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccccc
Q 018938 33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112 (348)
Q Consensus 33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~ 112 (348)
++|+++.|+ +..+|+++||+|++|++++|+|+||||||||+++|+|+++|+.|+|+++|.......
T Consensus 2 ~~~~~~~~~---------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~----- 67 (157)
T cd00267 2 IENLSFRYG---------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP----- 67 (157)
T ss_pred eEEEEEEeC---------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-----
Confidence 689999995 247999999999999999999999999999999999999999999999986431100
Q ss_pred CcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCC
Q 018938 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF 192 (348)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P 192 (348)
...++..++|.++ ||+||+||++|||||+.+|
T Consensus 68 ------~~~~~~~i~~~~q------------------------------------------lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 68 ------LEELRRRIGYVPQ------------------------------------------LSGGQRQRVALARALLLNP 99 (157)
T ss_pred ------HHHHHhceEEEee------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence 0011111222211 9999999999999999999
Q ss_pred cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 193 KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 193 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
+++||||||++||+.++..+.+.|.++.+. +.|+|++||+++++..+||++++|++|+
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999998654 7899999999999999999999999875
No 338
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.3e-38 Score=350.84 Aligned_cols=213 Identities=15% Similarity=0.190 Sum_probs=176.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++ +..++|+||||+|++||.+||+|+||||||||+++|.|++.|++|+|.++|.++..-.
T Consensus 1284 ~I~f~nVsf~Y~~-------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~-- 1354 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG-- 1354 (1522)
T ss_pred cEEEEEEEEEeCC-------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccC--
Confidence 5999999999963 2357999999999999999999999999999999999999999999999998753211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg 176 (348)
...+|+.+++++|++.++.. +..+++......+.+++.++++..++. ++ .....|||
T Consensus 1355 ---------~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957 1355 ---------LHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred ---------HHHHHhcCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence 23567888999888766655 444444322234566666677765542 12 23357999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+++|+|||||||||+||+++...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+|++.|
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998764 47999999999999875 8999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+++++.+.
T Consensus 1502 ~~~eLl~~ 1509 (1522)
T TIGR00957 1502 APSNLLQQ 1509 (1522)
T ss_pred CHHHHHhC
Confidence 99998764
No 339
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.6e-38 Score=275.39 Aligned_cols=156 Identities=17% Similarity=0.264 Sum_probs=128.0
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
.+++|+|+||+|++|++++|+||||||||||||+|.+ ++|++.++|..... .+..+.|.+
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~----------------~~~~~~~~~ 66 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKF----------------SRNKLIFID 66 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccccc----------------ccccEEEEh
Confidence 4679999999999999999999999999999999863 68888877642100 001111211
Q ss_pred CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccC--CcEEEeeccCCCCC
Q 018938 131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDLD 205 (348)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~--P~lLlLDEPtsgLD 205 (348)
+ .++++.+++. .++++.+||||||||++|||||+.+ |++|||||||++||
T Consensus 67 q-------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 67 Q-------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred H-------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 0 3466777764 4678899999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 206 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
+.++..+.+.|+++++ .|.|||++||+++++ ..||++++|.+|+..
T Consensus 122 ~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 122 QQDINQLLEVIKGLID-LGNTVILIEHNLDVL-SSADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEECCCCCC
Confidence 9999999999999864 699999999999997 579999999776543
No 340
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.8e-38 Score=300.96 Aligned_cols=218 Identities=21% Similarity=0.316 Sum_probs=176.5
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
+...|.++++++.=++ .++++++++||++.+||.+|||||||||||||.|+|.|..+|.+|.|++||-++.+
T Consensus 331 P~g~L~Ve~l~~~PPg-------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q- 402 (580)
T COG4618 331 PQGALSVERLTAAPPG-------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ- 402 (580)
T ss_pred CCceeeEeeeeecCCC-------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc-
Confidence 3457999999986543 46799999999999999999999999999999999999999999999999976532
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-------C--CcCcc----CCC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-------I--DLSWR----MHK 173 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l--~~~~~----~~~ 173 (348)
|....+.+.++|.+|++.++.....+++...-...+.+++-+....-+ + ..+.. -..
T Consensus 403 ----------Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~ 472 (580)
T COG4618 403 ----------WDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGAT 472 (580)
T ss_pred ----------CCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCC
Confidence 222345678999999988887765655542222344444433322222 1 12333 357
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
||||||||++|||||..+|.+++||||-|+||.+....+.+.|.+.. .+|.|+|+|||....+. .+|+|++|++|++.
T Consensus 473 LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~ 550 (580)
T COG4618 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRPSALA-SVDKILVLQDGRIA 550 (580)
T ss_pred CCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCHHHHh-hcceeeeecCChHH
Confidence 99999999999999999999999999999999999999999999975 56999999999999775 69999999999999
Q ss_pred eecChhHHHHh
Q 018938 254 LAMPMDKVKEA 264 (348)
Q Consensus 254 ~~g~~~~~~~~ 264 (348)
..|+.+++..+
T Consensus 551 ~FG~r~eVLa~ 561 (580)
T COG4618 551 AFGPREEVLAK 561 (580)
T ss_pred hcCCHHHHHHH
Confidence 99999988753
No 341
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3e-38 Score=274.44 Aligned_cols=216 Identities=24% Similarity=0.329 Sum_probs=166.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
|+.+.|+++.|... .+..+++|+++|++|++|+++.|+|.||||||||+++|+|.+.|++|+|.++|.++...+..
T Consensus 1 Mi~~~~~~~~f~~g----~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~ 76 (263)
T COG1101 1 MISLSNATKTFFKG----TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVA 76 (263)
T ss_pred CcccccceeeecCC----ChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHH
Confidence 46788898888531 12357899999999999999999999999999999999999999999999999876543221
Q ss_pred cccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc-c----CCCC----HH---HHHHHHHHcCCC----cCcc
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG-V----AGID----PQ---RRAELIKVLDID----LSWR 170 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~-~----~~~~----~~---~~~~~l~~l~l~----~~~~ 170 (348)
.. ...++-++|++ .....++.++++ .. . .++. .. ...+.+..+++. ++.+
T Consensus 77 ~R-----------A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ 145 (263)
T COG1101 77 KR-----------ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDR 145 (263)
T ss_pred HH-----------hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcCh
Confidence 11 11122222221 123456665543 11 1 1111 11 223445555553 3567
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
+.-|||||||-++|++|.++.|+||+|||-|++|||.....++++-.++.++.+.|.+||||+++.+..|.+|.++|++|
T Consensus 146 iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G 225 (263)
T COG1101 146 IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSG 225 (263)
T ss_pred hhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecChhH
Q 018938 251 KLQLAMPMDK 260 (348)
Q Consensus 251 ~i~~~g~~~~ 260 (348)
+|+.+...++
T Consensus 226 ~IvlDv~g~~ 235 (263)
T COG1101 226 KIVLDVTGEE 235 (263)
T ss_pred eEEEEccccc
Confidence 9998765443
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.7e-37 Score=321.87 Aligned_cols=221 Identities=22% Similarity=0.233 Sum_probs=158.3
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC---cCCCceEEEcCeecc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH---MVEPEMVKVLGRSAF 104 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~---~~~~G~i~i~G~~~~ 104 (348)
..+|+++|++++|+ ++.+|+|+||+|++|+++|||||||||||||||+|+|.. .|+.|+|.+.++...
T Consensus 175 ~~~I~i~nls~~y~---------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~ 245 (718)
T PLN03073 175 IKDIHMENFSISVG---------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV 245 (718)
T ss_pred ceeEEEceEEEEeC---------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC
Confidence 35799999999995 356999999999999999999999999999999999854 578889876554321
Q ss_pred ccccccc-----cCcccccchhhhhhhhhcCCCcc-------------ccccchH-------HHHH--hcc-CCC-CHHH
Q 018938 105 HDTALTS-----SGDLSYLGGEWRREVAFAGFEVP-------------IQMDVSA-------EKMI--FGV-AGI-DPQR 155 (348)
Q Consensus 105 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-------~~~~--~~~-~~~-~~~~ 155 (348)
. ..... ...... ....+..+++..+... ....... .+.. +.. ..+ ...+
T Consensus 246 g-~~~t~~~~v~~~~~~~-~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 246 G-DDTTALQCVLNTDIER-TQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred C-CCCCHHHHHHHhhHHH-HHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 1 11000 000000 0001111222211000 0000000 0111 111 111 2345
Q ss_pred HHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938 156 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232 (348)
Q Consensus 156 ~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtH 232 (348)
+.+++..+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+++ +.|||+|||
T Consensus 324 ~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsH 399 (718)
T PLN03073 324 AASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSH 399 (718)
T ss_pred HHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEEC
Confidence 67788888885 36778999999999999999999999999999999999999999999999764 679999999
Q ss_pred ChhhhhhhCCEEEEEcCCEEe-eecChhHHHH
Q 018938 233 IFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE 263 (348)
Q Consensus 233 d~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 263 (348)
|++++..+||++++|++|++. +.|+.+.+..
T Consensus 400 d~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 400 AREFLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999999999999996 6788776654
No 343
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-37 Score=276.16 Aligned_cols=212 Identities=21% Similarity=0.347 Sum_probs=167.8
Q ss_pred CeEEEeceEEEecCCC---------------CCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC
Q 018938 29 PTVEINALKFTYPGID---------------GHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP 93 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~---------------~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~ 93 (348)
++|+++||++.|.-.. +........+|+||||++++||.+||||+||||||||+|+|+|.++|++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 4688888888884321 0001234679999999999999999999999999999999999999999
Q ss_pred ceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCCH----HHHHHHHHHcCCC
Q 018938 94 EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGIDP----QRRAELIKVLDID 166 (348)
Q Consensus 94 G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~l~~l~l~ 166 (348)
|+|.+.|+..+- +.-..+| .+.++..+++. ...+... ++.+++.+.-+|.
T Consensus 82 G~v~v~G~v~~l----------------i~lg~Gf-------~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG 138 (249)
T COG1134 82 GKVKVTGKVAPL----------------IELGAGF-------DPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELG 138 (249)
T ss_pred ceEEEcceEehh----------------hhcccCC-------CcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 999999975311 0001122 22334433221 1123332 3455666665554
Q ss_pred --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
.+.++.++|-||+-|+++|.|...+|++||+||-.+-.|+.-+++-.+.+.++.++ +.|||+||||++.+.++||++
T Consensus 139 ~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~ 217 (249)
T COG1134 139 DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRA 217 (249)
T ss_pred HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhcCee
Confidence 57899999999999999999999999999999999999999999999999998654 799999999999999999999
Q ss_pred EEEcCCEEeeecChhHHHHh
Q 018938 245 VYVAHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 245 ~~l~~G~i~~~g~~~~~~~~ 264 (348)
++|++|++...|.++++...
T Consensus 218 i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 218 IWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred EEEeCCEEEEcCCHHHHHHH
Confidence 99999999999999998753
No 344
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.7e-37 Score=340.12 Aligned_cols=211 Identities=18% Similarity=0.268 Sum_probs=175.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++ +..++|+|+||+|++||.+||+|+||||||||+++|+|++. .+|+|.++|.++..-
T Consensus 1217 ~I~f~nVs~~Y~~-------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i--- 1285 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSV--- 1285 (1490)
T ss_pred eEEEEEEEEEeCC-------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccC---
Confidence 5999999999963 34679999999999999999999999999999999999986 899999999875321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cCc----cCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LSW----RMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~LSg 176 (348)
-...+++.+++++|++.++.. +..+++......+.+++.++++..++. ++. ....|||
T Consensus 1286 --------~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg 1356 (1490)
T TIGR01271 1286 --------TLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN 1356 (1490)
T ss_pred --------CHHHHHhceEEEeCCCccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH
Confidence 113467788898887766655 444444322234566777777777652 122 2247999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++|||||+++|+|||||||||+||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|++|+|++.|
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 47999999999998875 9999999999999999
Q ss_pred ChhHHHH
Q 018938 257 PMDKVKE 263 (348)
Q Consensus 257 ~~~~~~~ 263 (348)
+++++.+
T Consensus 1434 ~p~~Ll~ 1440 (1490)
T TIGR01271 1434 SIQKLLN 1440 (1490)
T ss_pred CHHHHHc
Confidence 9999885
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.3e-37 Score=317.33 Aligned_cols=194 Identities=20% Similarity=0.256 Sum_probs=146.8
Q ss_pred ceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE-----------EcCeec
Q 018938 35 ALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK-----------VLGRSA 103 (348)
Q Consensus 35 ~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~-----------i~G~~~ 103 (348)
+++++|++ ...+|++++ .+++|+++||+||||||||||+|+|+|+++|+.|+|. ++|.++
T Consensus 78 ~~~~~yg~--------~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 78 EPVHRYGV--------NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred CceEEecC--------CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHH
Confidence 48899952 246999999 9999999999999999999999999999999999987 666543
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccc---cchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM---DVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
.......... ...+++..+.....+ ..++.+++... ....++.++++.+++. .++.+.+|||||
T Consensus 149 ~~~~~~~~~~---------~~~~~~~~q~~~~~p~~~~~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe 217 (590)
T PRK13409 149 QNYFKKLYNG---------EIKVVHKPQYVDLIPKVFKGKVRELLKKV--DERGKLDEVVERLGLENILDRDISELSGGE 217 (590)
T ss_pred HHHHHHHhcc---------CcceeecccchhhhhhhhcchHHHHHHhh--hHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 2100000000 001111111111111 11333333211 1234567888999986 478899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
||||+||+||+.+|++|||||||++||+..+..+.++|+++. + |.|||+||||++++..+||++++|+++
T Consensus 218 ~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 218 LQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999986 4 899999999999999999999999863
No 346
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.8e-37 Score=315.28 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=163.4
Q ss_pred CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeeccccccccccCcccccchhhhhhh
Q 018938 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV 126 (348)
Q Consensus 50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (348)
+++++|+|+|+++++||+++|+|||||||||||++|+|...+. +|+|.++|.+... ..+++.+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--------------~~~~~~i 101 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--------------KEMRAIS 101 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--------------HHHhhhc
Confidence 4578999999999999999999999999999999999988764 7899999975321 1244567
Q ss_pred hhcCCCccccccchHHHHH-hc----cC-CCC----HHHHHHHHHHcCCCc--CccCC------CCCHHHHHHHHHHHHH
Q 018938 127 AFAGFEVPIQMDVSAEKMI-FG----VA-GID----PQRRAELIKVLDIDL--SWRMH------KVSDGQRRRVQICMGL 188 (348)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~-~~----~~-~~~----~~~~~~~l~~l~l~~--~~~~~------~LSgGqrQRv~lAraL 188 (348)
+|++++......+++.+.+ +. .. ... .++++++++.+++.. +..++ .|||||||||+||++|
T Consensus 102 ~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 102 AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred eeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 7877776666666666543 21 11 112 134677888888852 44444 5999999999999999
Q ss_pred ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|++. ++..+||++++|++|++++.|+++++.+
T Consensus 182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 999999999999999999999999999999975 4999999999995 7888999999999999999999988754
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.6e-37 Score=336.84 Aligned_cols=210 Identities=20% Similarity=0.278 Sum_probs=168.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeeccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFH 105 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~ 105 (348)
.+|+++||++.|+.. .+.+.+|+|||+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|.+...
T Consensus 758 ~~l~~~nl~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK-----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred ceEEEEeeEEEecCC-----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence 358999999999521 134679999999999999999999999999999999999986 678999999986421
Q ss_pred cccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--c--C-CCCH----HHHHHHHHHcCCC--cCccCC-
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--V--A-GIDP----QRRAELIKVLDID--LSWRMH- 172 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~--~-~~~~----~~~~~~l~~l~l~--~~~~~~- 172 (348)
.+++.++|+.|+.......++.+.+ +. + + ..+. ++++++++.+++. .+..++
T Consensus 833 ---------------~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~ 897 (1394)
T TIGR00956 833 ---------------SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897 (1394)
T ss_pred ---------------hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCC
Confidence 1334566766655444555665543 21 1 1 1222 3456788888885 355555
Q ss_pred ---CCCHHHHHHHHHHHHHccCCc-EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh-hhhhCCEEEEE
Q 018938 173 ---KVSDGQRRRVQICMGLLKPFK-VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG-LENWPSHIVYV 247 (348)
Q Consensus 173 ---~LSgGqrQRv~lAraL~~~P~-lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~-~~~~~d~v~~l 247 (348)
.|||||||||+||++|+.+|+ ||||||||+|||+.++..+++.|+++++ .|+|||++||+++. +...||++++|
T Consensus 898 ~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L 976 (1394)
T TIGR00956 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLL 976 (1394)
T ss_pred CCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEE
Confidence 799999999999999999997 9999999999999999999999999975 59999999999996 45679999999
Q ss_pred cCC-EEeeecChh
Q 018938 248 AHG-KLQLAMPMD 259 (348)
Q Consensus 248 ~~G-~i~~~g~~~ 259 (348)
++| ++++.|++.
T Consensus 977 ~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 977 QKGGQTVYFGDLG 989 (1394)
T ss_pred cCCCEEEEECCcc
Confidence 997 999999863
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=9.4e-37 Score=315.54 Aligned_cols=184 Identities=16% Similarity=0.334 Sum_probs=144.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+++|++ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 450 ~~i~~~nv~~~~~~--------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~------- 514 (659)
T TIGR00954 450 NGIKFENIPLVTPN--------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK------- 514 (659)
T ss_pred CeEEEEeeEEECCC--------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC-------
Confidence 46999999999952 357999999999999999999999999999999999999999998876431
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc-------CCCCHHHHHHHHHHcCCCc--Cc---------
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV-------AGIDPQRRAELIKVLDIDL--SW--------- 169 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~l~~l~l~~--~~--------- 169 (348)
..+++++|+..+... +.. ++.++. .....+++.++++.+++.. ++
T Consensus 515 ---------------~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~ 578 (659)
T TIGR00954 515 ---------------GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQD 578 (659)
T ss_pred ---------------CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccc
Confidence 123344343333323 333 333221 1123455667788777641 22
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
...+||||||||++|||||+++|++|||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ .+||++++|+
T Consensus 579 ~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHH-HhCCEEEEEe
Confidence 2378999999999999999999999999999999999999999988864 389999999999987 5799999996
No 349
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-36 Score=262.45 Aligned_cols=214 Identities=21% Similarity=0.234 Sum_probs=165.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeecccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~~ 106 (348)
.+|+++||+.+-. +++.+|++|||+|++||+++|+||||||||||.++|+|. +.+++|+|.++|+++..-
T Consensus 2 ~~L~I~dLhv~v~--------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l 73 (251)
T COG0396 2 MMLEIKDLHVEVE--------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILEL 73 (251)
T ss_pred ceeEEeeeEEEec--------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccC
Confidence 3799999999984 225899999999999999999999999999999999996 367899999999876432
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc----cCC---C---CHHHHHHHHHHcCCC---cCccCC-
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG----VAG---I---DPQRRAELIKVLDID---LSWRMH- 172 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~---~~~~~~~~l~~l~l~---~~~~~~- 172 (348)
.... ..+..+.+.+|.++..+..+..+++.. ..+ . ..+...+.++.++++ +++.+.
T Consensus 74 ~~~E----------RAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~ 143 (251)
T COG0396 74 SPDE----------RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE 143 (251)
T ss_pred CHhH----------HHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC
Confidence 2110 011122222233333344444433210 011 0 124456778888886 356664
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEcCCE
Q 018938 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGK 251 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~ 251 (348)
.+|||||+|..|+.+++.+|++.|||||-||||..+-+.+.+.+.++. +.|.++++|||.-..+..+ .|++.+|.+|+
T Consensus 144 GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~~~liITHy~rll~~i~pD~vhvl~~Gr 222 (251)
T COG0396 144 GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR-EEGRGVLIITHYQRLLDYIKPDKVHVLYDGR 222 (251)
T ss_pred CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHhhcCCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999986 4599999999998888765 39999999999
Q ss_pred EeeecChhHHH
Q 018938 252 LQLAMPMDKVK 262 (348)
Q Consensus 252 i~~~g~~~~~~ 262 (348)
|+..|.+ ++.
T Consensus 223 Iv~sG~~-el~ 232 (251)
T COG0396 223 IVKSGDP-ELA 232 (251)
T ss_pred EEecCCH-HHH
Confidence 9999998 443
No 350
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-37 Score=293.07 Aligned_cols=213 Identities=21% Similarity=0.328 Sum_probs=176.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
-|+++||+|.|.+ ++++|+||||++.+|+.++|+||||+||||++|++..+....+|.|+++|+++..-
T Consensus 537 ~i~fsnvtF~Y~p--------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv--- 605 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV--- 605 (790)
T ss_pred eEEEEEeEEecCC--------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH---
Confidence 5999999999964 58999999999999999999999999999999999999999999999999875321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHc-------CCCc------CccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL-------DIDL------SWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~------~~~~~~LSg 176 (348)
....+|+.++.++|+..++.+....++.++.+..+.+++.++.+.- ++.. ..+.-.|||
T Consensus 606 --------t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSG 677 (790)
T KOG0056|consen 606 --------TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSG 677 (790)
T ss_pred --------HHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCC
Confidence 1234678888888877766655555665655554444443333322 2221 223457999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||+++..|.+++|||.||+||..+.+.+...|.++|. ++|-|+|.|.+..+-. ||.|+++++|+|++.|
T Consensus 678 GEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG 754 (790)
T KOG0056|consen 678 GEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVISNGRIVERG 754 (790)
T ss_pred cchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999999985 6799999999999875 9999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
..+++...
T Consensus 755 ~HeeLl~r 762 (790)
T KOG0056|consen 755 RHEELLKR 762 (790)
T ss_pred cHHHHHhc
Confidence 99998764
No 351
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=300.73 Aligned_cols=203 Identities=25% Similarity=0.304 Sum_probs=158.9
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
..++++++|+++.|++ .+.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~~--------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----- 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG--------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----- 384 (530)
T ss_pred CCeeEEEeccccccCC--------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----
Confidence 3568999999999953 368999999999999999999999999999999999998999998877432
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc-cCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG-VAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv 182 (348)
-.++|+.+... .+....+..+.+.. .+......+...+..|++. ..+++..||||||.|+
T Consensus 385 ------v~igyf~Q~~~----------~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl 448 (530)
T COG0488 385 ------VKIGYFDQHRD----------ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL 448 (530)
T ss_pred ------eEEEEEEehhh----------hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHH
Confidence 12333332210 00111223333221 2222245677888899886 3568899999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee-cChhHH
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA-MPMDKV 261 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 261 (348)
.||+.++.+|.+||||||||+||..++..+.+.|.++ ..|||+||||.+|+..+|++++.+.+ ++... |+.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999999999998754 56999999999999999999999998 55544 776665
Q ss_pred HH
Q 018938 262 KE 263 (348)
Q Consensus 262 ~~ 263 (348)
.+
T Consensus 524 ~~ 525 (530)
T COG0488 524 LE 525 (530)
T ss_pred HH
Confidence 43
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-35 Score=330.09 Aligned_cols=200 Identities=19% Similarity=0.296 Sum_probs=156.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++++|++ ...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 636 ~i~~~~~~~~~~~-------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i------- 701 (1522)
T TIGR00957 636 SITVHNATFTWAR-------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV------- 701 (1522)
T ss_pred cEEEEEeEEEcCC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEE-------
Confidence 6999999999963 23579999999999999999999999999999999999999999999988742
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHH-HHHhccCCCCHHHHHHHHHHcCC---------C----cCccCCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGVAGIDPQRRAELIKVLDI---------D----LSWRMHKVS 175 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LS 175 (348)
+|++|+..+. ..+.. ++.++.. .+.++..++++..++ . ...+..+||
T Consensus 702 -----------------~yv~Q~~~l~-~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LS 762 (1522)
T TIGR00957 702 -----------------AYVPQQAWIQ-NDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS 762 (1522)
T ss_pred -----------------EEEcCCcccc-CCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCC
Confidence 2222322222 22333 3333321 233333333332221 1 234578899
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHH-HhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC-EERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~-~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||||++|||||+.+|+++||||||++||+...+.+++.+.+.. ...++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISE 841 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEe
Confidence 999999999999999999999999999999999999999986531 1247899999999999876 99999999999999
Q ss_pred ecChhHHHH
Q 018938 255 AMPMDKVKE 263 (348)
Q Consensus 255 ~g~~~~~~~ 263 (348)
.|+.+++.+
T Consensus 842 ~g~~~~l~~ 850 (1522)
T TIGR00957 842 MGSYQELLQ 850 (1522)
T ss_pred eCCHHHHHh
Confidence 999998865
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.7e-35 Score=324.15 Aligned_cols=215 Identities=17% Similarity=0.293 Sum_probs=166.7
Q ss_pred eEEEeceEEEecCCCC-C---CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceEEEcCeec
Q 018938 30 TVEINALKFTYPGIDG-H---PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMVKVLGRSA 103 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~-~---~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i~i~G~~~ 103 (348)
.+..+||++..+.... + ...+++.+|+|||+++++|++++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998843110 0 001245799999999999999999999999999999999998653 578999988642
Q ss_pred cccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc----cC-CCCH----HHHHHHHHHcCCC--cCccC
Q 018938 104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG----VA-GIDP----QRRAELIKVLDID--LSWRM 171 (348)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~-~~~~----~~~~~~l~~l~l~--~~~~~ 171 (348)
.. ..+++.++|+.|+......+++.+.+ +. .. ..+. +.++++++.+++. .+..+
T Consensus 947 ~~--------------~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~v 1012 (1470)
T PLN03140 947 KQ--------------ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV 1012 (1470)
T ss_pred Ch--------------HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCcc
Confidence 10 11234466776665555556665543 21 11 1222 2356788889885 24443
Q ss_pred -----CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEE
Q 018938 172 -----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIV 245 (348)
Q Consensus 172 -----~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~ 245 (348)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++ .+..+||+++
T Consensus 1013 g~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vl 1091 (1470)
T PLN03140 1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELL 1091 (1470)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEE
Confidence 58999999999999999999999999999999999999999999999975 4999999999998 4778999999
Q ss_pred EEcC-CEEeeecChh
Q 018938 246 YVAH-GKLQLAMPMD 259 (348)
Q Consensus 246 ~l~~-G~i~~~g~~~ 259 (348)
+|++ |++++.|++.
T Consensus 1092 lL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1092 LMKRGGQVIYSGPLG 1106 (1470)
T ss_pred EEcCCCEEEEECCcc
Confidence 9996 8999999863
No 354
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.8e-35 Score=267.01 Aligned_cols=195 Identities=15% Similarity=0.217 Sum_probs=127.0
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHH-HHHhCCCcCCCceEEEc-CeeccccccccccCcccccchh--hh-hh
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTIL-KIIGGKHMVEPEMVKVL-GRSAFHDTALTSSGDLSYLGGE--WR-RE 125 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl-k~i~Gl~~~~~G~i~i~-G~~~~~~~~~~~~~~~~~~~~~--~~-~~ 125 (348)
+..+|+++||+|++||+++|+||||||||||+ .+|.. .|.+.+. +......... +.+ +..+. .+ ..
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~ 77 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFL---GQM-DKPDVDSIEGLS 77 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhh---ccc-CccccccccCCC
Confidence 46799999999999999999999999999995 44431 2221110 0000000000 000 00000 00 00
Q ss_pred hhhcCCCcc--ccccch---HHH---HHhcc-CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC-
Q 018938 126 VAFAGFEVP--IQMDVS---AEK---MIFGV-AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF- 192 (348)
Q Consensus 126 ~~~~~~~~~--~~~~~~---~~~---~~~~~-~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P- 192 (348)
..+..++.. .....+ ..+ ..... .........++++.+++. .++++.+|||||||||+|||||+.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 000000000 000001 001 11001 111122235678888874 36789999999999999999999998
Q ss_pred -cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE------cCCEEeeec
Q 018938 193 -KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV------AHGKLQLAM 256 (348)
Q Consensus 193 -~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l------~~G~i~~~g 256 (348)
++|||||||++||+..+..+.++|+++++ .|.|||++|||++++ .+||++++| ++|+|+++|
T Consensus 158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 59999999999999999999999999864 599999999999997 489999999 999999875
No 355
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.1e-35 Score=324.94 Aligned_cols=202 Identities=21% Similarity=0.319 Sum_probs=159.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++|+|+.. .++++|+|+||+|++|+.++|+||+|||||||+++|+|.++|.+|.+..
T Consensus 614 ~I~~~~vsF~y~~~------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~----------- 676 (1495)
T PLN03232 614 AISIKNGYFSWDSK------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV----------- 676 (1495)
T ss_pred cEEEEeeEEEcCCC------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-----------
Confidence 59999999999631 1357999999999999999999999999999999999999998875421
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSg 176 (348)
++..++|++|++.++.....+++.++. ..+.++..++++..++. . ..+...|||
T Consensus 677 ------------~~~~Iayv~Q~p~Lf~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSG 743 (1495)
T PLN03232 677 ------------IRGSVAYVPQVSWIFNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISG 743 (1495)
T ss_pred ------------ecCcEEEEcCccccccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCH
Confidence 123455666665555444445555554 34566666676665542 1 123457999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~-l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||++||||+..+|+++|||||||+||+.+.+.+++. +.... .++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 744 GQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 744 GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEE 820 (1495)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHH-hCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999988765 54432 4789999999999875 5999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+.+++.+.
T Consensus 821 Gt~~eL~~~ 829 (1495)
T PLN03232 821 GTFAELSKS 829 (1495)
T ss_pred cCHHHHHhc
Confidence 999988753
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.8e-35 Score=325.15 Aligned_cols=202 Identities=22% Similarity=0.360 Sum_probs=160.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC-ceEEEcCeeccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP-EMVKVLGRSAFHDT 107 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~-G~i~i~G~~~~~~~ 107 (348)
..|+++|++|+|+.. .++++|+|+||+|++|+.++|+||+|||||||+++|+|.++|.+ |+|.+.|.
T Consensus 613 ~~I~~~nvsf~y~~~------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~------ 680 (1622)
T PLN03130 613 PAISIKNGYFSWDSK------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT------ 680 (1622)
T ss_pred CceEEEeeEEEccCC------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCe------
Confidence 359999999999631 13579999999999999999999999999999999999999999 88875432
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKV 174 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~L 174 (348)
++|++|++.++.....+++.++.+ .+.++..++++..++. . ..+...|
T Consensus 681 ------------------Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~L 741 (1622)
T PLN03130 681 ------------------VAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741 (1622)
T ss_pred ------------------EEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCC
Confidence 344445544444333445555433 3566666666665542 1 1234579
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
||||||||+||||+..+|+++|||||||+||+...+.+++ .+..+. .++|+|+|||+++.+. .||+|++|++|+++
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-QVDRIILVHEGMIK 818 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHH-hCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999888764 555543 4799999999998875 59999999999999
Q ss_pred eecChhHHHHh
Q 018938 254 LAMPMDKVKEA 264 (348)
Q Consensus 254 ~~g~~~~~~~~ 264 (348)
+.|+.+++.+.
T Consensus 819 e~Gt~~eL~~~ 829 (1622)
T PLN03130 819 EEGTYEELSNN 829 (1622)
T ss_pred EeCCHHHHHhc
Confidence 99999998653
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.7e-35 Score=326.14 Aligned_cols=200 Identities=18% Similarity=0.234 Sum_probs=159.6
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC----cCCCceEEEcCeeccccccccccCcccccchhhhhhh
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH----MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV 126 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~----~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (348)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+. .|.+|+|.++|.+..... ..+++.+
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~------------~~~r~~i 140 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK------------KHYRGDV 140 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH------------hhcCcee
Confidence 356999999999999999999999999999999999985 468999999997542110 0123345
Q ss_pred hhcCCCccccccchHHHHH-hc--c--C-----CCCHH----H-HHHHHHHcCCCc--Cc-----cCCCCCHHHHHHHHH
Q 018938 127 AFAGFEVPIQMDVSAEKMI-FG--V--A-----GIDPQ----R-RAELIKVLDIDL--SW-----RMHKVSDGQRRRVQI 184 (348)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~-~~--~--~-----~~~~~----~-~~~~l~~l~l~~--~~-----~~~~LSgGqrQRv~l 184 (348)
+|+.++......+++.+.+ +. . + ....+ + .+.+++.+++.. +. .+..|||||||||+|
T Consensus 141 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsI 220 (1394)
T TIGR00956 141 VYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSI 220 (1394)
T ss_pred EEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHH
Confidence 6666655555556665533 21 1 1 11221 2 245788888852 32 457899999999999
Q ss_pred HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938 185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVK 262 (348)
Q Consensus 185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 262 (348)
|++|+.+|++|+|||||+|||+.++..+++.|++++++.|.|||+++|+. +.+..++|++++|++|++++.|+++++.
T Consensus 221 A~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 221 AEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred HHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999876699999999996 7888999999999999999999998774
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-35 Score=250.24 Aligned_cols=187 Identities=25% Similarity=0.354 Sum_probs=153.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+++.+||+... ++..+|.++||++.+||++-|.||||||||||||+|+|+..|++|+|.+.|..+...
T Consensus 2 ~L~a~~L~~~R---------~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~--- 69 (209)
T COG4133 2 MLEAENLSCER---------GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV--- 69 (209)
T ss_pred cchhhhhhhcc---------CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc---
Confidence 47788998877 467899999999999999999999999999999999999999999999988653221
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~ 183 (348)
...+.+...|.+.+..+...+++.+++ |. +.+ .+...+.++++.+|+. .+.++.+||-|||+||+
T Consensus 70 ---------~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvA 140 (209)
T COG4133 70 ---------RESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVA 140 (209)
T ss_pred ---------hhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHH
Confidence 112345566776666666666665543 22 122 2456778899999986 47789999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 238 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 238 (348)
|||.+++.+++.||||||++||..+...+-.++..-+. .|..||++||+.-.+.
T Consensus 141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~~ 194 (209)
T COG4133 141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPIA 194 (209)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCCC
Confidence 99999999999999999999999999999999998765 5889999999976553
No 359
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=311.60 Aligned_cols=217 Identities=20% Similarity=0.329 Sum_probs=184.4
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..+.++|+++.|+. .+.|++++||.|++|||.|++|+|||||||++|+|+|..+|++|++.+.|.++.....
T Consensus 563 ~~~~~~~L~k~y~~--------~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG--------KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecc--------hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc
Confidence 56899999999963 1229999999999999999999999999999999999999999999998876533211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
....++.++|.+|...+...++.++.+. ...+... +.++.+++.+++. .+++++.+|||+|
T Consensus 635 ----------~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~k 704 (885)
T KOG0059|consen 635 ----------FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNK 704 (885)
T ss_pred ----------hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcch
Confidence 1124567889988888888888776542 2233332 3456788888885 4677999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
+|+.+|.||+.+|++++|||||+|+||.+|+.+|+++.++.+ .|+.||++||.+++++.+|||+.+|.+|++...|+++
T Consensus 705 RkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 705 RRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred hhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChH
Confidence 999999999999999999999999999999999999999875 4669999999999999999999999999999999999
Q ss_pred HHHHh
Q 018938 260 KVKEA 264 (348)
Q Consensus 260 ~~~~~ 264 (348)
++...
T Consensus 784 ~LKsr 788 (885)
T KOG0059|consen 784 ELKSR 788 (885)
T ss_pred HHHhh
Confidence 98754
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.1e-35 Score=324.99 Aligned_cols=199 Identities=20% Similarity=0.273 Sum_probs=159.1
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeeccccccccccCcccccchhhhhhhh
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA 127 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (348)
.+.+|+|+|+.|++||+++|+||||||||||||+|+|.+.|+ +|+|.++|.+..... .++.++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~--------------~~~~i~ 242 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV--------------PRKTSA 242 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc--------------ccceeE
Confidence 456999999999999999999999999999999999999888 899999997642110 123355
Q ss_pred hcCCCccccccchHHHHH-hc--cCC----------CC-H---------------------------HHHHHHHHHcCCC
Q 018938 128 FAGFEVPIQMDVSAEKMI-FG--VAG----------ID-P---------------------------QRRAELIKVLDID 166 (348)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~-~~--~~~----------~~-~---------------------------~~~~~~l~~l~l~ 166 (348)
|+.++......+++.+.+ +. ..+ .. . ..++.+++.+|+.
T Consensus 243 yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~ 322 (1470)
T PLN03140 243 YISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLD 322 (1470)
T ss_pred EecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCc
Confidence 555554444445554432 11 100 00 0 0134578888885
Q ss_pred c-------CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhh
Q 018938 167 L-------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLE 238 (348)
Q Consensus 167 ~-------~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~ 238 (348)
. +..+..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++++.|.|||+++|+. .++.
T Consensus 323 ~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~ 402 (1470)
T PLN03140 323 ICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETF 402 (1470)
T ss_pred cccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHH
Confidence 2 4467899999999999999999999999999999999999999999999999876799999999996 6888
Q ss_pred hhCCEEEEEcCCEEeeecChhHHHH
Q 018938 239 NWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 239 ~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
.+||+|++|++|++++.|+.+++..
T Consensus 403 ~lfD~vilL~~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 403 DLFDDIILLSEGQIVYQGPRDHILE 427 (1470)
T ss_pred HHhheEEEeeCceEEEeCCHHHHHH
Confidence 9999999999999999999988753
No 361
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-35 Score=274.48 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=179.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.+.+.+++|.|. +.+++|+++||++++|+.++++||+|+||||++++|-..+.+.+|.|.++|+++...
T Consensus 262 ~v~F~~V~F~y~--------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~v--- 330 (497)
T COG5265 262 AVAFINVSFAYD--------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV--- 330 (497)
T ss_pred eEEEEEEEeecc--------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHh---
Confidence 478999999996 368999999999999999999999999999999999999999999999999876432
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-------C--cC----ccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-------D--LS----WRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~--~~----~~~~~LSg 176 (348)
..+..++.++.++|+..++.+....++.++......+.+....+...+ + .+ .+.-.|||
T Consensus 331 --------tq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSg 402 (497)
T COG5265 331 --------TQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSG 402 (497)
T ss_pred --------HHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccC
Confidence 123467889999998888777777777776655554444333333221 1 12 23456999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||+++.+|++|+|||.||+||..+.+++...|++.. .|.|-+++-|.+..+.. ||.|++|++|+|++.|
T Consensus 403 gekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlsti~~-adeiivl~~g~i~erg 479 (497)
T COG5265 403 GEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERG 479 (497)
T ss_pred chHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhccC-CceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999975 48899999999999976 9999999999999999
Q ss_pred ChhHHHHh
Q 018938 257 PMDKVKEA 264 (348)
Q Consensus 257 ~~~~~~~~ 264 (348)
+.+++...
T Consensus 480 ~h~~ll~~ 487 (497)
T COG5265 480 THEELLAA 487 (497)
T ss_pred cHHHHHHc
Confidence 99998765
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.3e-34 Score=321.48 Aligned_cols=184 Identities=24% Similarity=0.367 Sum_probs=141.8
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. +|+++
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~i------------------------ayv~Q 494 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRI------------------------SFSPQ 494 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE------------------------EEEeC
Confidence 468999999999999999999999999999999999999999999998742 22222
Q ss_pred CccccccchHHHHHhccCCCCHHHHHHHHH---------HcCCC----cCccCCCCCHHHHHHHHHHHHHccCCcEEEee
Q 018938 132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIK---------VLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198 (348)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~l~l~----~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLD 198 (348)
+..++.....+++.++.. .+.++..++++ .+... ...+..+|||||||||+|||||+.+|+++|||
T Consensus 495 ~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD 573 (1490)
T TIGR01271 495 TSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD 573 (1490)
T ss_pred CCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 222222212233333321 12222222222 22111 23456899999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 199 EITVDLDVLARADLLRF-LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 199 EPtsgLD~~~~~~l~~~-l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
|||++||+..+..+++. +..+. .|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus 574 ep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 574 SPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999985 56654 38999999999999875 99999999999999999998865
No 363
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=243.49 Aligned_cols=215 Identities=22% Similarity=0.338 Sum_probs=156.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|.++|++|+|--.... .-.-++|+++||+++.|||++|-||||||||||||+|-|-+.|++|+|.+.-..-+-+..
T Consensus 3 ~~l~v~~~~KtFtlH~q~--Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQG--GVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLV 80 (235)
T ss_pred ceeeeecchhheEeeecC--CEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhh
Confidence 358999999998210000 013579999999999999999999999999999999999999999999885322111100
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cCCCC----HHHHHHHHHHcCCCc---CccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGID----PQRRAELIKVLDIDL---SWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~l~l~~---~~~~~~LSgGq 178 (348)
...... +-...++.++|+.|.....+....-+.... -.+.. ..++..++.++++.. .-.|.++||||
T Consensus 81 --~a~pr~-vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 81 --TAEPRE-VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred --ccChHH-HHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 000000 011123556776543332222222222110 11222 245567888888862 34689999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
||||.|||.++.+-+||+|||||++||..+++.+.++|.+. +..|.++|=|-||-+.=+.+|||++.|..
T Consensus 158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999985 56799999999999888899999988753
No 364
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.9e-34 Score=233.41 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=154.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeecccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHD 106 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~ 106 (348)
++.++||+.+.+ +.-.|-++||+|.+||++.|+||||||||||+..+.|.+.+. +|++.++++.+..-
T Consensus 2 ~l~l~nvsl~l~---------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l 72 (213)
T COG4136 2 MLCLKNVSLRLP---------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72 (213)
T ss_pred ceeeeeeeecCC---------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc
Confidence 588999998874 467899999999999999999999999999999999977553 57788877653211
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhccC----CC-CHHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGVA----GI-DPQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
+ .-++.+++.+++..+++.+++. ++.+.++ +. .+..+...++..+++ .++.|.+|||||
T Consensus 73 ------------P-a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQ 139 (213)
T COG4136 73 ------------P-AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQ 139 (213)
T ss_pred ------------c-hhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcch
Confidence 1 1245566665555555555543 3333332 11 123456778888886 478899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
|-||+|-|+|+..|+.++||||+|.||...+.++.+++-.-.++.|...|+||||.+.+. ...||+.|
T Consensus 140 rARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 140 RARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred HHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 999999999999999999999999999999999999998888888999999999999987 45666654
No 365
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.2e-33 Score=309.07 Aligned_cols=186 Identities=19% Similarity=0.260 Sum_probs=140.4
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+. ++|++
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~------------------------i~yv~ 727 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS------------------------IAYVP 727 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCe------------------------EEEEe
Confidence 356999999999999999999999999999999999999999999876432 22332
Q ss_pred CCccccccchHHH-HHhccCCCCHHHHH---------HHHHHc--CCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEE
Q 018938 131 FEVPIQMDVSAEK-MIFGVAGIDPQRRA---------ELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLL 196 (348)
Q Consensus 131 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~l~~l--~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLl 196 (348)
|+..++ ..+..+ +.++. ..+.++.. +.++.+ |+. .+.+..+|||||||||+|||||+.+|+++|
T Consensus 728 Q~~~l~-~~Tv~enI~~~~-~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~ill 805 (1560)
T PTZ00243 728 QQAWIM-NATVRGNILFFD-EEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYL 805 (1560)
T ss_pred CCCccC-CCcHHHHHHcCC-hhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 332222 223333 22221 11111222 223333 332 256788999999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHh
Q 018938 197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 197 LDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 264 (348)
|||||++||+.....+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 806 LDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 806 LDDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred EcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999888764432222 4899999999999985 6999999999999999999988753
No 366
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-33 Score=283.72 Aligned_cols=215 Identities=19% Similarity=0.322 Sum_probs=176.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC---CCceEEEcCeecccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV---EPEMVKVLGRSAFHD 106 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~---~~G~i~i~G~~~~~~ 106 (348)
.+..++++..-..... ..+.+|++||..+++||+.||+||+||||||||++|+|.... .+|+|.+||+...
T Consensus 25 ~~~~~~~~~~~~~~~~----~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~-- 98 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK----KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD-- 98 (613)
T ss_pred eeEEEEEEEEecCCCC----ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc--
Confidence 4778899888753110 147899999999999999999999999999999999998653 6789999995421
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-----ccCC-CC----HHHHHHHHHHcCCC--cCccC---
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-----GVAG-ID----PQRRAELIKVLDID--LSWRM--- 171 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~----~~~~~~~l~~l~l~--~~~~~--- 171 (348)
...+++..+|+.|+..+...++++|.+. .++. .+ .++++++++.+++. .+..+
T Consensus 99 ------------~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~ 166 (613)
T KOG0061|consen 99 ------------SRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNP 166 (613)
T ss_pred ------------hhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCC
Confidence 1235566788888888888888887542 1222 12 24677889999986 34444
Q ss_pred --CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEc
Q 018938 172 --HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVA 248 (348)
Q Consensus 172 --~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~ 248 (348)
..+|||||+||+||.-|+++|.||+|||||+|||..+..++++.|++++++ |+|||++-|.+. .+..+.|++++|.
T Consensus 167 ~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs 245 (613)
T KOG0061|consen 167 GIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLS 245 (613)
T ss_pred CCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhc
Confidence 469999999999999999999999999999999999999999999999987 999999999985 6777899999999
Q ss_pred CCEEeeecChhHHHH
Q 018938 249 HGKLQLAMPMDKVKE 263 (348)
Q Consensus 249 ~G~i~~~g~~~~~~~ 263 (348)
+|++++.|++++..+
T Consensus 246 ~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 246 EGEVVYSGSPRELLE 260 (613)
T ss_pred CCcEEEecCHHHHHH
Confidence 999999999986643
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.3e-32 Score=253.27 Aligned_cols=202 Identities=17% Similarity=0.237 Sum_probs=139.3
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh--------CC--CcCCCc-----------eEEEcCeecccccccc
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG--------GK--HMVEPE-----------MVKVLGRSAFHDTALT 110 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~--------Gl--~~~~~G-----------~i~i~G~~~~~~~~~~ 110 (348)
...|+|||++|+.|.+++|+|+||||||||++.+. +. ..|..+ -|.++..++.......
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998662 11 012111 2333333321111100
Q ss_pred ccCccccc--chhh-------------hh---hhhhcCCCccccccchHHHHHhccCC-CCHHHHHHHHHHcCCC---cC
Q 018938 111 SSGDLSYL--GGEW-------------RR---EVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDID---LS 168 (348)
Q Consensus 111 ~~~~~~~~--~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~---~~ 168 (348)
...|. .+.. .. .+.|.+.+......++..+....+.. ....+..++++.+++. .+
T Consensus 88 ---~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 88 ---PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred ---HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhc
Confidence 01111 0111 11 12222333333334444443211111 1124456788888885 36
Q ss_pred ccCCCCCHHHHHHHHHHHHHccC---CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 245 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~---P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~ 245 (348)
+++.+|||||+||++||++|+.+ |+++||||||+|||+..+..++++|+++.+ .|.|||++||+++++. .||+++
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~i~-~aD~ii 242 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDVIK-CADWII 242 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEE
Confidence 78899999999999999999996 799999999999999999999999999864 5899999999999986 699999
Q ss_pred EE------cCCEEeeecCh
Q 018938 246 YV------AHGKLQLAMPM 258 (348)
Q Consensus 246 ~l------~~G~i~~~g~~ 258 (348)
+| ++|+|++.|++
T Consensus 243 ~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 243 DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EecCCcCCCCCEEEEeCCC
Confidence 99 89999998863
No 368
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7e-33 Score=240.13 Aligned_cols=277 Identities=19% Similarity=0.261 Sum_probs=194.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC----CCceEEEcCeecc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV----EPEMVKVLGRSAF 104 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~----~~G~i~i~G~~~~ 104 (348)
+.+.++||+..+.... |...+++++|+++++||+-||+|+||||||-..|.|+|..+- +....++++.+..
T Consensus 2 ~LLDIrnL~IE~~Tsq-----G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL 76 (330)
T COG4170 2 PLLDIRNLTIEFKTSQ-----GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred CcccccceEEEEecCC-----CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhh
Confidence 4788999999996532 567899999999999999999999999999999999997531 1111222222111
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccch---HHHHHhc------------cCCCCHHHHHHHHHHcCCCc--
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS---AEKMIFG------------VAGIDPQRRAELIKVLDIDL-- 167 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------~~~~~~~~~~~~l~~l~l~~-- 167 (348)
.-.+ ..... ...+.+++.+++..-..+-+ ...++.. ..++.+.++-+++..+|+..
T Consensus 77 ~L~P---r~RRk----~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk 149 (330)
T COG4170 77 RLSP---RERRK----LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred cCCh---HHhhh----hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH
Confidence 1100 00000 11233444433322111111 1111111 11234456678888999853
Q ss_pred ---CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 168 ---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 168 ---~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
..++.+|--||-|+|+||.|++.+|++||.||||+++|+.++.+++.+|.++.+..|.||+++|||+..+.++||++
T Consensus 150 DIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i 229 (330)
T COG4170 150 DIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI 229 (330)
T ss_pred HHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhhe
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHH-HHHHHHHHHhCCCCCcccCCCCCccccChHHHHH
Q 018938 245 VYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDE-ERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAV 317 (348)
Q Consensus 245 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (348)
-||.-|+-++.++.+++.+.+.+.+.+.+...+....+. ..+.+.....+.+|.++..+-||+.-++.+-+..
T Consensus 230 ~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~PDF~~~lp~KsrL~tL~G~iP~Le~lPiGCRLGPRCP~AQk 303 (330)
T COG4170 230 NVLYCGQTVESAPSEELVTMPHHPYTQALIRAIPDFGSALPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQR 303 (330)
T ss_pred EEEEecccccccchhHHhcCCCCchHHHHHHhCccccccCcchhhhccCCCcCchhhhCCcccccCCCCchhhh
Confidence 999999999999999999988877655443332211110 1112223334667777777888887665544443
No 369
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.98 E-value=3.6e-33 Score=235.51 Aligned_cols=209 Identities=22% Similarity=0.303 Sum_probs=163.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
++.++||+..- -|-.+|.++..||++-+|||||||||||+-.++|+. |-+|+|.+.|.+....
T Consensus 3 l~qln~v~~~t-------------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~--- 65 (248)
T COG4138 3 LMQLNDVAEST-------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAW--- 65 (248)
T ss_pred eeeeccccccc-------------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHH---
Confidence 57888887642 467899999999999999999999999999999985 7899999999865321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCH---HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQI 184 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l 184 (348)
-..++.+..+|..++....+.+.+..++. +...+. ..+.++...++++ +.+.+++|||||.|||-+
T Consensus 66 --------~~~eLArhRAYLsQqq~p~f~mpV~~YL~-L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRL 136 (248)
T COG4138 66 --------SATELARHRAYLSQQQTPPFAMPVWHYLT-LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 136 (248)
T ss_pred --------hHhHHHHHHHHHhhccCCcchhhhhhhhh-hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEE
Confidence 11234444555544433333333333321 111112 3455677777775 467889999999999999
Q ss_pred HHHHcc-------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 185 CMGLLK-------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 185 AraL~~-------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|...++ ..++||+|||.++||...+..+..+|.++|+. |.+|||++||++.-.+.+|++++++.|++...|.
T Consensus 137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecc
Confidence 988764 33799999999999999999999999999965 9999999999999999999999999999999999
Q ss_pred hhHHHHhh
Q 018938 258 MDKVKEAS 265 (348)
Q Consensus 258 ~~~~~~~~ 265 (348)
.+++.+..
T Consensus 216 ~~eVlt~~ 223 (248)
T COG4138 216 REEVLTPP 223 (248)
T ss_pred hhhhcChH
Confidence 99987643
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=1.4e-31 Score=286.56 Aligned_cols=216 Identities=16% Similarity=0.225 Sum_probs=176.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
-.|+++|++.+|.+ +-..||+||||+|++||.+||||..|||||||+++|-.+..|.+|+|.|||.++.+
T Consensus 1137 G~I~f~~~~~RYrp-------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~--- 1206 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISK--- 1206 (1381)
T ss_pred CeEEEEEeEEEeCC-------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccc---
Confidence 35999999999964 45689999999999999999999999999999999999999999999999987532
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC---------CcCcc----CCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI---------DLSWR----MHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~LS 175 (348)
+.. .++|.+++..+|++.++..... .++-.+...++++..++++...+ .++.. ..++|
T Consensus 1207 ------igL--~dLRsrlsIIPQdPvLFsGTvR-~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1207 ------IGL--HDLRSRLSIIPQDPVLFSGTVR-FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred ------ccH--HHHHhcCeeeCCCCceecCccc-cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence 111 3578888888887766544322 22222223345566666666543 12322 35799
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
-||||.++|||||+++.+||+|||+|+++|+++-..|.+.|++.- .++|||.|-|+++.+.. ||||+||++|++++.
T Consensus 1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF 1354 (1381)
T ss_pred hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccchhhh-cCeEEEeeCCeEeec
Confidence 999999999999999999999999999999999999999999864 37999999999999987 899999999999999
Q ss_pred cChhHHHHhhh
Q 018938 256 MPMDKVKEASK 266 (348)
Q Consensus 256 g~~~~~~~~~~ 266 (348)
++|.++.+++.
T Consensus 1355 dsP~~Ll~~~~ 1365 (1381)
T KOG0054|consen 1355 DSPAELLSDKD 1365 (1381)
T ss_pred CChHHHHhCCc
Confidence 99999987543
No 371
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=3.3e-31 Score=256.41 Aligned_cols=220 Identities=24% Similarity=0.319 Sum_probs=149.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
-+.+.|+++.|. +..+++|++|++.+|+.+||+|+|||||||+|++|.|-..|.+-++.+.-.. .+...
T Consensus 75 dvk~~sls~s~~---------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls--~e~~p 143 (614)
T KOG0927|consen 75 DVKIESLSLSFH---------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS--REIEP 143 (614)
T ss_pred cceeeeeeeccC---------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc--ccCCC
Confidence 489999999995 4789999999999999999999999999999999999888877654332110 00000
Q ss_pred cccCcccccc---hhhhhhhhhcC----CCccccccchHHHHHhccCCCC----HHHHHHHHHHcCCC---cCccCCCCC
Q 018938 110 TSSGDLSYLG---GEWRREVAFAG----FEVPIQMDVSAEKMIFGVAGID----PQRRAELIKVLDID---LSWRMHKVS 175 (348)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~l~l~---~~~~~~~LS 175 (348)
.....+..+. ...+.++.+.. +.......-...+........+ ..++.+++.-++.. .++....||
T Consensus 144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 0000000000 00011111100 0000000000001110010111 22344555556543 356789999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE-Eee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK-LQL 254 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~-i~~ 254 (348)
||||.|++|||+|..+|++|||||||+|||++++.++-+.|.++- ..++++++|+.+++..+|++|+.|++++ +.+
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---CceEEEEecchhhhhhHhhhhheecccceeee
Confidence 999999999999999999999999999999999999999998652 1289999999999999999999999999 567
Q ss_pred ecChhHHHH
Q 018938 255 AMPMDKVKE 263 (348)
Q Consensus 255 ~g~~~~~~~ 263 (348)
.|+.+++..
T Consensus 301 ~Gnydqy~~ 309 (614)
T KOG0927|consen 301 EGNYDQYVK 309 (614)
T ss_pred cCCHHHHhh
Confidence 789888754
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=8.4e-32 Score=239.18 Aligned_cols=164 Identities=19% Similarity=0.216 Sum_probs=119.6
Q ss_pred eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc---------eEEEcCeeccccccccccCcccccchhhhhhh
Q 018938 56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE---------MVKVLGRSAFHDTALTSSGDLSYLGGEWRREV 126 (348)
Q Consensus 56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G---------~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (348)
++++|++++| +++|+||||||||||+++|+|++.+..| .+.+.|..... ......+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~v 78 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK--------------PANFAEV 78 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC--------------CCceEEE
Confidence 6789999999 9999999999999999999998765533 22222221100 0011234
Q ss_pred hhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHc----cCCcEEEeeccCC
Q 018938 127 AFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITV 202 (348)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~----~~P~lLlLDEPts 202 (348)
+++++....+ +... ..+++.++++. .-..++++.+||||||||++||++|+ .+|+++||||||+
T Consensus 79 ~~vfq~~~~~---------~~~~--~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~ 146 (197)
T cd03278 79 TLTFDNSDGR---------YSII--SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDA 146 (197)
T ss_pred EEEEEcCCCc---------eeEE--ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcc
Confidence 4443332221 1110 12345566665 21246678999999999999999987 4679999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 203 DLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 203 gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
+||+..+..+.++|+++.+ +.|||++||+++++ .+||+++.|..
T Consensus 147 ~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 147 ALDDANVERFARLLKEFSK--ETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred cCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-hhcceEEEEEe
Confidence 9999999999999999853 68999999999987 58999998864
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=7.8e-31 Score=280.92 Aligned_cols=204 Identities=23% Similarity=0.349 Sum_probs=165.0
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
..+.++++|.+++++.. +..+.|+||||+|++|+.+||+|+-|||||+||.+|+|.++..+|++.++|..
T Consensus 515 ~~~~i~i~~~sfsW~~~------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsi---- 584 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSV---- 584 (1381)
T ss_pred CCceEEEeeeeEecCCC------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeE----
Confidence 34579999999999641 24559999999999999999999999999999999999999999999998852
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCc-------------CccCCC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL-------------SWRMHK 173 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------------~~~~~~ 173 (348)
+|.+|+.-++.....++++++. ..++++.+++++...|.. ..+.-+
T Consensus 585 --------------------aYv~Q~pWI~ngTvreNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGin 643 (1381)
T KOG0054|consen 585 --------------------AYVPQQPWIQNGTVRENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGIN 643 (1381)
T ss_pred --------------------EEeccccHhhCCcHHHhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccC
Confidence 2333333333333345555553 346777778877766531 234568
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
||||||||++||||+.++.|++|||-|+|++|.+....+++-.-... -.++|+|+|||.++++.. ||.|++|++|+|.
T Consensus 644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQLQFLPH-ADQIIVLKDGKIV 721 (1381)
T ss_pred CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCchhhhhh-CCEEEEecCCeEe
Confidence 99999999999999999999999999999999999998876554332 347899999999998875 9999999999999
Q ss_pred eecChhHHHH
Q 018938 254 LAMPMDKVKE 263 (348)
Q Consensus 254 ~~g~~~~~~~ 263 (348)
+.|+.+++.+
T Consensus 722 ~~Gty~el~~ 731 (1381)
T KOG0054|consen 722 ESGTYEELLK 731 (1381)
T ss_pred cccCHHHHHh
Confidence 9999999875
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=255.30 Aligned_cols=219 Identities=21% Similarity=0.314 Sum_probs=164.8
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.+.++++|++.. ..++|+||++.+||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++....
T Consensus 261 ~~~l~v~~l~~~-------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s 327 (500)
T COG1129 261 EPVLEVRNLSGG-------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS 327 (500)
T ss_pred CcEEEEecCCCC-------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC
Confidence 467888888743 2589999999999999999999999999999999998899999999999754322
Q ss_pred cc-cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc-cCCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938 108 AL-TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG-VAGIDP----QRRAELIKVLDID---LSWRMHKVSDG 177 (348)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG 177 (348)
+. .-...+.|++.+.+..-.+...... .+++...+. +. ....+. ....++.+.+++. .+..+.+||||
T Consensus 328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~--~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGG 405 (500)
T COG1129 328 PRDAIKAGIAYVPEDRKSEGLVLDMSIA--ENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGG 405 (500)
T ss_pred HHHHHHcCCEeCCcccccCcCcCCCcHH--HheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCch
Confidence 11 0112344444433322222222211 122221111 01 001222 2345677778774 45778999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
.||||.|||.|+.+|++|||||||.|+|.-++.+|+++|++++++ |++||++|-++.++..+||||+||++|+++..-+
T Consensus 406 NQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 406 NQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred hhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999999865 9999999999999999999999999999998766
Q ss_pred hhHHH
Q 018938 258 MDKVK 262 (348)
Q Consensus 258 ~~~~~ 262 (348)
.+++.
T Consensus 485 ~~~~t 489 (500)
T COG1129 485 REEAT 489 (500)
T ss_pred cccCC
Confidence 66543
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=257.69 Aligned_cols=205 Identities=23% Similarity=0.335 Sum_probs=158.1
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
+.|.|.++|++|.|.+ +..++++++|-|..++.+++|||||||||||||+++|.+.|..|.|.-.-..
T Consensus 386 p~pvi~~~nv~F~y~~--------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~---- 453 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSD--------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN---- 453 (614)
T ss_pred CCCeEEEeccccCCCC--------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc----
Confidence 4678999999999963 3479999999999999999999999999999999999999999876432111
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCC-CCHHHHHHHHHHcCCCc---CccCCCCCHHHHHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAG-IDPQRRAELIKVLDIDL---SWRMHKVSDGQRRR 181 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~l~l~~---~~~~~~LSgGqrQR 181 (348)
.+.+. .++.+. ....+.+.-++. -.+.. ...+.+..++..+|+.. ..++.+||+|||.|
T Consensus 454 -------~~~~y----~Qh~~e-----~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~r 517 (614)
T KOG0927|consen 454 -------KLPRY----NQHLAE-----QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRR 517 (614)
T ss_pred -------cchhh----hhhhHh-----hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchh
Confidence 11111 111111 011112222222 12222 34567788999999963 45789999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDK 260 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 260 (348)
|.+|++++.+|.+|||||||||||..+...+.+.|.++ ..+||+||||+.++.+++++|++..+|.+. ..|....
T Consensus 518 VlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 518 VLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred HHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence 99999999999999999999999999999988888754 568999999999999999999999998875 4577666
Q ss_pred HHH
Q 018938 261 VKE 263 (348)
Q Consensus 261 ~~~ 263 (348)
...
T Consensus 594 yk~ 596 (614)
T KOG0927|consen 594 YKE 596 (614)
T ss_pred HHH
Confidence 544
No 376
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.6e-31 Score=252.22 Aligned_cols=198 Identities=25% Similarity=0.311 Sum_probs=142.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
-|.+.+++..|+ ++.+|.+-++++..|..+||+|+||+|||||||+|+- |.|...... +
T Consensus 80 Di~~~~fdLa~G---------~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve--q---- 138 (582)
T KOG0062|consen 80 DIHIDNFDLAYG---------GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE--Q---- 138 (582)
T ss_pred ceeeeeeeeeec---------chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch--h----
Confidence 488899999994 5789999999999999999999999999999999986 222221110 0
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc----CCCCHHHHH-HHHHHcCCCc---CccCCCCCHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV----AGIDPQRRA-ELIKVLDIDL---SWRMHKVSDGQRRR 181 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~l~~l~l~~---~~~~~~LSgGqrQR 181 (348)
++. +.... . . ++ ....+.....++..- .....+.+. ++|.-+|... .++..+||||+|.|
T Consensus 139 ----E~~--g~~t~-~--~--~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMr 206 (582)
T KOG0062|consen 139 ----EVR--GDDTE-A--L--QS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMR 206 (582)
T ss_pred ----hee--ccchH-H--H--hh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhH
Confidence 000 00000 0 0 00 001111111111100 111222233 3777788763 46789999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDK 260 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 260 (348)
++|||||..+|||||||||||.||..+..++.+.|..+ +.|+|+||||..|+..+|..|+.+++-++- +.|+.++
T Consensus 207 laLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 207 LALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 99999999999999999999999999999998888754 589999999999999999999999988874 5688887
Q ss_pred HHHh
Q 018938 261 VKEA 264 (348)
Q Consensus 261 ~~~~ 264 (348)
+...
T Consensus 283 Fvk~ 286 (582)
T KOG0062|consen 283 FVKT 286 (582)
T ss_pred HHHh
Confidence 7543
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=8.5e-31 Score=218.81 Aligned_cols=131 Identities=26% Similarity=0.411 Sum_probs=102.0
Q ss_pred eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP 134 (348)
Q Consensus 55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (348)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.++.... ....+..+++.++...
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~ 69 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID-----------IEELRRRIGYVPQDPQ 69 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH-----------HHHHHHTEEEEESSHC
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc-----------cccccccccccccccc
Confidence 78999999999999999999999999999999999999999999998754311 1123455666655544
Q ss_pred ccccchHHHHHhccCCCCHHHHHHHHHHcCCCc------CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC
Q 018938 135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV 202 (348)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts 202 (348)
+....+..+. ....+..++++.+++.. ++++.+||+||||||+||+||+.+|++||||||||
T Consensus 70 ~~~~~tv~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 70 LFPGLTVREN------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHTTSBHHHH------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccc------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4444444433 12345667778777532 33459999999999999999999999999999997
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=3.6e-30 Score=231.55 Aligned_cols=191 Identities=19% Similarity=0.165 Sum_probs=124.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEe-CCCEEEEECCCCCcHHHHHHHHhCCC-cCCCceEEEcCeeccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLN-AGDRCLLVGSNGAGKTTILKIIGGKH-MVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~i~Gl~-~~~~G~i~i~G~~~~~~~ 107 (348)
.|+++|+. +|.+ . .+++|+.. +|++++|+||||||||||+++|++.+ -+..+....... .
T Consensus 5 ~i~l~nf~-~y~~---------~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~-----~ 66 (213)
T cd03279 5 KLELKNFG-PFRE---------E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENL-----R 66 (213)
T ss_pred EEEEECCc-CcCC---------c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhH-----H
Confidence 48899988 6631 2 56677654 58999999999999999999999643 222222211100 0
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHH--HHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAE--LIKVLDID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~l~--~~~~~~~LSgGqrQRv~ 183 (348)
. .+.. ......+.+..+........ ....+.+.+...+ .+...++. .++++.+|||||+||++
T Consensus 67 ~-----~~~~--~~~~~~v~~~f~~~~~~~~~------~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~ 133 (213)
T cd03279 67 S-----VFAP--GEDTAEVSFTFQLGGKKYRV------ERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLAS 133 (213)
T ss_pred H-----HhcC--CCccEEEEEEEEECCeEEEE------EEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHH
Confidence 0 0000 00011111111110000000 0011233322222 12222222 36778999999999999
Q ss_pred HHHHHcc----------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 184 ICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 184 lAraL~~----------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
|||||+. +|++|||||||++||+..+..+.+.|.++++ .+.|||++||+++++..+||+++++++|..
T Consensus 134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 9999984 6789999999999999999999999999864 488999999999999999999999998853
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.8e-30 Score=240.83 Aligned_cols=201 Identities=22% Similarity=0.369 Sum_probs=158.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|+.|.|.. ...-+..||++|++||++-|+|.||||||||+++++|++.|++|+|.++|+++..+..
T Consensus 322 ~lelrnvrfay~~--------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~l- 392 (546)
T COG4615 322 TLELRNVRFAYQD--------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQL- 392 (546)
T ss_pred ceeeeeeeeccCc--------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCH-
Confidence 5999999999963 2256789999999999999999999999999999999999999999999987643221
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCC-CCHHHHHHHHHHcCCCc-----Cc--cCCCCCHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDIDL-----SW--RMHKVSDGQRRR 181 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~-----~~--~~~~LSgGqrQR 181 (348)
.++|+-++-++.+..++ ... .+..+ .+...++..++++.+.. +. ..-.||.|||+|
T Consensus 393 ----------edYR~LfSavFsDyhLF-----~~l-l~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR 456 (546)
T COG4615 393 ----------EDYRKLFSAVFSDYHLF-----DQL-LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR 456 (546)
T ss_pred ----------HHHHHHHHHHhhhHhhh-----Hhh-hCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH
Confidence 12333333221111111 111 12222 34566777888776631 22 346899999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
+++.-||+-+-+|+++||=.+.-||.-|+.+++.+.-+.++.|+||+.||||-... ..|||++.|++|++++..
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999999999998888889999999999996544 579999999999998764
No 380
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1.4e-29 Score=231.95 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=69.3
Q ss_pred CccCCCCCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH 243 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 243 (348)
+.++.+||||||||++|||||+ .+|+++||||||++||+.++..+++.|+++.+ +.+||++||+.+ +..+||+
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~d~ 229 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE-LLEVADK 229 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH-HHhhCCE
Confidence 5678999999999999999996 36899999999999999999999999999753 778888888865 6689999
Q ss_pred EEEEc
Q 018938 244 IVYVA 248 (348)
Q Consensus 244 v~~l~ 248 (348)
+++|.
T Consensus 230 i~~l~ 234 (243)
T cd03272 230 FYGVK 234 (243)
T ss_pred EEEEE
Confidence 99885
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=9.1e-30 Score=228.60 Aligned_cols=185 Identities=16% Similarity=0.247 Sum_probs=116.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
-|+++|.. +|+ +..++++++| ++++|+||||||||||+++|.-. +|.+....
T Consensus 5 ~l~l~nfk-~~~---------~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~----------~G~~~~~~--- 56 (212)
T cd03274 5 KLVLENFK-SYA---------GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV----------FGFRASKM--- 56 (212)
T ss_pred EEEEECcc-cCC---------CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH----------hccCHHHh---
Confidence 37788876 773 4679999988 89999999999999999999721 12111000
Q ss_pred cccCcccccchhhhhhhhhcC---CCccccc-cchHHHH--HhccCCCCHH---HHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAG---FEVPIQM-DVSAEKM--IFGVAGIDPQ---RRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~~~~~~~---~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
....+.++.+. ...+.. .+..... ....... ..+....... ...++++.+++. .++++..||+||
T Consensus 57 -~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~ 132 (212)
T cd03274 57 -RQKKLSDLIHN---SAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGE 132 (212)
T ss_pred -hhhhHHHHhcC---CCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHH
Confidence 00011111000 000000 0000000 0000000 0111100000 013344555554 355688999999
Q ss_pred HHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 179 RRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 179 rQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
|||++||+|++. +|+++||||||+|||+.++..+++.|+++. .+.|+|++||+. ++..+||++++|..
T Consensus 133 ~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 999999999974 589999999999999999999999999974 367999999995 56789999999864
No 382
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=8.7e-28 Score=253.67 Aligned_cols=108 Identities=20% Similarity=0.313 Sum_probs=97.0
Q ss_pred HHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 018938 156 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 229 (348)
Q Consensus 156 ~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvii 229 (348)
..++++.+++. .++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..++++|+++.+ .|.|||+
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIi 888 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVV 888 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 34567777875 36788999999999999999999999 99999999999999999999999999864 5899999
Q ss_pred EecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHhh
Q 018938 230 ATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 230 vtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~ 265 (348)
|||+++++. .||+|++| ++|++++.|+++++...+
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 999999985 79999999 799999999999987644
No 383
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.9e-28 Score=231.83 Aligned_cols=202 Identities=20% Similarity=0.302 Sum_probs=154.2
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
..|+|-+.+|+|.|+ |.++.+..++|-|.--..+||+||||.||||||++|.|-+.|..|+.+-+-.
T Consensus 583 ~PPvLGlH~VtFgy~--------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr----- 649 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP--------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR----- 649 (807)
T ss_pred CCCeeecccccccCC--------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce-----
Confidence 457899999999997 5689999999999999999999999999999999999999998886432211
Q ss_pred ccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHHhccCCCCHHHHHHHHHHcCCCc---CccCCCCCHHHHHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL---SWRMHKVSDGQRRR 181 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~LSgGqrQR 181 (348)
-.++|..+... +...-+.-+++......+...+...+-.+|+.. .-.+..|||||+-|
T Consensus 650 -----------------L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaR 712 (807)
T KOG0066|consen 650 -----------------LRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKAR 712 (807)
T ss_pred -----------------eeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHH
Confidence 11222222111 111122223332223345566677788888863 23678999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee-ecChhH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL-AMPMDK 260 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 260 (348)
|++|-.-+..|+||||||||++||.++...+.+.|.++ ...||+||||-.++......++|+.+..|-+ +|..++
T Consensus 713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999999999999999999999999999999998765 5589999999999988878889888766543 355555
Q ss_pred HH
Q 018938 261 VK 262 (348)
Q Consensus 261 ~~ 262 (348)
+.
T Consensus 789 Yk 790 (807)
T KOG0066|consen 789 YK 790 (807)
T ss_pred HH
Confidence 44
No 384
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.7e-28 Score=235.06 Aligned_cols=197 Identities=22% Similarity=0.285 Sum_probs=155.0
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
..|.|++.+|+|.|.+ +..+.+.++++.++.-+.++++|+||+||||++|++.|-..|..|.+.+.+..
T Consensus 359 ~~p~l~i~~V~f~y~p-------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~---- 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRL---- 427 (582)
T ss_pred CCCeeEEEeeeccCCC-------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccc----
Confidence 3578999999999964 23379999999999999999999999999999999999888888876554421
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcCCCc---CccCCCCCHHHHHHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLDIDL---SWRMHKVSDGQRRRV 182 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~LSgGqrQRv 182 (348)
.+.+. .+..+.+. ......-.+ ....++..++...+-+..+|++. .+.+..||||||-||
T Consensus 428 -------ri~~f---~Qhhvd~l------~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrv 491 (582)
T KOG0062|consen 428 -------RIKYF---AQHHVDFL------DKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRV 491 (582)
T ss_pred -------eecch---hHhhhhHH------HHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHH
Confidence 12211 11111111 011111111 12234556777888899999862 456889999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
++|.+...+|.+|+||||||+||.++...+...|+.+ +..||+||||.+++..+|+.+|+.++|++..
T Consensus 492 afA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 492 AFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999988888754 5689999999999999999999999999975
No 385
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=4.3e-28 Score=216.57 Aligned_cols=166 Identities=19% Similarity=0.157 Sum_probs=111.7
Q ss_pred eeeEEeCCCEEEEECCCCCcHHHHHHHHh----CCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938 58 FTLTLNAGDRCLLVGSNGAGKTTILKIIG----GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV 133 (348)
Q Consensus 58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~----Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (348)
.++++.+| +++|+||||||||||+++|. |...|..|.+..+...+.... . ...+.+..+..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~------~--------~~~v~~~f~~~ 80 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGE------V--------RAQVKLAFENA 80 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCC------C--------cEEEEEEEEeC
Confidence 34566677 99999999999999999994 887776665431111111000 0 00111111111
Q ss_pred -----cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHH------HHHHHHHccCCcEEEeeccCC
Q 018938 134 -----PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRR------VQICMGLLKPFKVLLLDEITV 202 (348)
Q Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQR------v~lAraL~~~P~lLlLDEPts 202 (348)
.....++..+.+... ......+.+ ++.+.+||+||+|| ++||||++.+|+++||||||+
T Consensus 81 ~~~~~~v~r~~~~~~~~~~~---~~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 81 NGKKYTITRSLAILENVIFC---HQGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred CCCEEEEEEEhhHhhceeee---chHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 011111221111110 112222222 56789999999996 789999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 203 DLDVLARA-DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 203 gLD~~~~~-~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
+||+..+. .+.++|.++.++.+.|||++||+++.+. .||+++.|.+
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~ 197 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEK 197 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEee
Confidence 99999999 9999999986554889999999999875 6999999864
No 386
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=9.4e-28 Score=228.33 Aligned_cols=184 Identities=22% Similarity=0.281 Sum_probs=136.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+++-.+++|.|++ ..|+-=.=+|..||+++++||||-|||||.++|+|.++|++|. ..+=
T Consensus 342 lv~y~~~~k~~g~----------F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~--------- 401 (591)
T COG1245 342 LVEYPDLKKTYGD----------FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDL--------- 401 (591)
T ss_pred eeecchheeecCc----------eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Cccc---------
Confidence 4555566666631 2333334456678999999999999999999999999999986 1100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCC--C-CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG--I-DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQI 184 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l 184 (348)
.++ |-+|........++++++..... + +.....++++-|.++ .++++.+|||||.|||+|
T Consensus 402 ----~vS-----------yKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaI 466 (591)
T COG1245 402 ----KVS-----------YKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAI 466 (591)
T ss_pred ----eEe-----------ecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHH
Confidence 111 11111111122334443322110 1 122334566667665 478899999999999999
Q ss_pred HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
|.||..++++.|||||++.||.+.|-.+...|+++..+.++|.++|.||+..+..++||++++.
T Consensus 467 aa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 467 AAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 387
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=6.8e-27 Score=256.60 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=94.6
Q ss_pred HHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHc---cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 018938 158 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLL---KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 231 (348)
Q Consensus 158 ~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~---~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivt 231 (348)
++++.+++. .++++.+|||||+|||+||+||+ .+|++|||||||+|||+..+..++++|+++++ .|.|||+||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIs 869 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIE 869 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 466777875 36788999999999999999997 69999999999999999999999999999874 599999999
Q ss_pred cChhhhhhhCCEEEEEc------CCEEeeecChhHHHH
Q 018938 232 HIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKE 263 (348)
Q Consensus 232 Hd~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~ 263 (348)
|+++++ .+||++++|. +|++++.|+++++..
T Consensus 870 Hdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 870 HNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999 7999999996 799999999999875
No 388
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=5.7e-28 Score=222.53 Aligned_cols=179 Identities=16% Similarity=0.224 Sum_probs=114.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCC-CceEEEcCe-eccccccc--cccCcccccchhhhhhhhhcCCCccccccch
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGKHMVE-PEMVKVLGR-SAFHDTAL--TSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-~G~i~i~G~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (348)
..+++|+||||||||||+++|++++.+. .|++.+.|. ++...... .....+....+..... ..+......+.++
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~--~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKS--QSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcc--cCcccccCCceEE
Confidence 4599999999999999999999998765 356766654 22111000 0000111111100000 0000000000011
Q ss_pred HHH-------HHhccC--CCCHHHHHHHHHHcCCCc----------------------CccCCCCCHHHHHHHHHHHHHc
Q 018938 141 AEK-------MIFGVA--GIDPQRRAELIKVLDIDL----------------------SWRMHKVSDGQRRRVQICMGLL 189 (348)
Q Consensus 141 ~~~-------~~~~~~--~~~~~~~~~~l~~l~l~~----------------------~~~~~~LSgGqrQRv~lAraL~ 189 (348)
+.. ..+... ....+++.++++.+++.. +.++.+||+|||||++||+||+
T Consensus 103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 000 000011 112355667788887752 2568899999999999999998
Q ss_pred ----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 190 ----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 190 ----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
.+|+++||||||++||+..+..+++.|+++. .|.|||++||+.+ +...||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~~-~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKEG-MFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCHH-HHHhCCEEEEEE
Confidence 5789999999999999999999999999974 3889999999955 445799998764
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=7.7e-27 Score=246.08 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=92.5
Q ss_pred HHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHcc---CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 018938 156 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLK---PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 229 (348)
Q Consensus 156 ~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~---~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvii 229 (348)
..++++.+++. .++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..++++|+++.+ .|.|||+
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIv 886 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVV 886 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 34566777775 367889999999999999999997 5999999999999999999999999999864 5999999
Q ss_pred EecChhhhhhhCCEEEEE------cCCEEeeecChhHH
Q 018938 230 ATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKV 261 (348)
Q Consensus 230 vtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 261 (348)
+||+++++. .||++++| ++|++++.|+++++
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999985 69999999 79999999988764
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=2.5e-27 Score=217.72 Aligned_cols=178 Identities=12% Similarity=0.149 Sum_probs=113.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee-cc-ccccccccCcccccchhhhhhhhhcCCCccc--ccc
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS-AF-HDTALTSSGDLSYLGGEWRREVAFAGFEVPI--QMD 138 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 138 (348)
.++ +++|+||||||||||+.+|++++.++.|++...+.. .. .+........-.. -.+.|..+.... ...
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~------v~~~f~~~~~~~~~~~~ 93 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY------VTAVYEDDDGEEKTFRR 93 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE------EEEEEEcCCCcEEEEEE
Confidence 344 999999999999999999999887766665543311 00 0000000000000 011111111000 000
Q ss_pred -chHHHHHhccC--CCCHHHHHHHHHHcCCCc------------------------CccCCCCCHHHHHHHHHHHHHccC
Q 018938 139 -VSAEKMIFGVA--GIDPQRRAELIKVLDIDL------------------------SWRMHKVSDGQRRRVQICMGLLKP 191 (348)
Q Consensus 139 -~~~~~~~~~~~--~~~~~~~~~~l~~l~l~~------------------------~~~~~~LSgGqrQRv~lAraL~~~ 191 (348)
.......+... ........++++.+++.. ..++.+||+|||||++||+|++.+
T Consensus 94 ~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 94 IITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred EEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 00000000111 123344556666666631 123488999999999999999864
Q ss_pred ----CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 192 ----FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 192 ----P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
|+++||||||++||+..+..+.++|++++++ |.+||+|||+.+.+ .+||++++|..
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 8999999999999999999999999998644 89999999997766 68999998864
No 391
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=230.36 Aligned_cols=187 Identities=20% Similarity=0.300 Sum_probs=139.8
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
+..|+++||+..-+. +...++++||+|++||.+.|.||||||||||+|+|+|+-+.-+|+|.+-..
T Consensus 390 ~~~i~~~nl~l~~p~--------~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~------ 455 (604)
T COG4178 390 DHGITLENLSLRTPD--------GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD------ 455 (604)
T ss_pred cceeEEeeeeEECCC--------CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC------
Confidence 467999999999863 468999999999999999999999999999999999998766666543210
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC--CCCHHHHHHHHHHcCCCc--------CccCCCCCHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA--GIDPQRRAELIKVLDIDL--------SWRMHKVSDG 177 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~l~~--------~~~~~~LSgG 177 (348)
....|.+|.+.+......+.+.+... ..+.+...++|..++|+. ++--..||+|
T Consensus 456 ----------------~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G 519 (604)
T COG4178 456 ----------------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519 (604)
T ss_pred ----------------CceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence 11223333333322221222323221 245667778888888741 1223679999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
||||+++||.|+++|++++|||.|++||+.+...+++++++-+ .+.|||-|+|..... .+.++.+.+
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~-~~h~~~l~l 586 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPTLW-NFHSRQLEL 586 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchhhH-HHHhhheee
Confidence 9999999999999999999999999999999999999998743 489999999996654 455655544
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=5.7e-27 Score=208.35 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=114.3
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE--cCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV--LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
.++++++++.+| +.+|+||||||||||+.+|.... .|.... .|.... .+...+. . ...+.+...
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l---~~~~~~~~r~~~~~---~~i~~~~------~-~~~i~~~~~ 76 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL---GGKASDTNRGSSLK---DLIKDGE------S-SAKITVTLK 76 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh---cCCcccccccccHH---HHhhCCC------C-eEEEEEEEE
Confidence 457788898888 88999999999999999987422 222110 011000 0000000 0 000111000
Q ss_pred CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH----ccCCcEEEeeccCCCCCHH
Q 018938 132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVL 207 (348)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL----~~~P~lLlLDEPtsgLD~~ 207 (348)
...... ..........+.++++. .-..++++.+||+|||||++||+|| +.+|+++||||||++||+.
T Consensus 77 ~~~~~~--------~~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 77 NQGLDA--------NPLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred cCCccC--------CcCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 000000 00111122344555555 2224678899999999999999999 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHh--cCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 208 ARADLLRFLRKECEE--RGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 208 ~~~~l~~~l~~l~~~--~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
.+..+.++|.+++++ .+.|||++||+++++..+ |+|.+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 999999999998654 246899999999999886 9999998653
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=2.6e-26 Score=221.28 Aligned_cols=219 Identities=17% Similarity=0.300 Sum_probs=167.1
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc-c
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF-H 105 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~-~ 105 (348)
..+.|++++|+..-. .+...+++|||+|.+||++||.|-.|-|-+.|+.+|+|+.++.+|+|.++|+++. .
T Consensus 254 g~~vL~V~~L~v~~~--------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 254 GEVVLEVEDLSVKDR--------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325 (501)
T ss_pred CCeEEEEeeeEeecC--------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEecccc
Confidence 457899999998753 2357899999999999999999999999999999999999889999999998751 1
Q ss_pred ccc-ccccCcccccchhhhhhhhhcCCCccccccchH-HHHHhcc--------CC-CCH----HHHHHHHHHcCCC---c
Q 018938 106 DTA-LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGV--------AG-IDP----QRRAELIKVLDID---L 167 (348)
Q Consensus 106 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~-~~~----~~~~~~l~~l~l~---~ 167 (348)
... ......+++++.+..+. +.+ ..++. ++..... .+ .+. ....++++.+++. .
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~-Glv-------~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~ 397 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGH-GLV-------LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP 397 (501)
T ss_pred CCHHHHHhcCCccCChhhccC-ccc-------cCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC
Confidence 010 00111233333221111 111 11222 2222111 11 222 2345778888874 3
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
..+..+||||.+||+-+||-|..+|++||+.+||-|||..+.+.+.+.|.+.. +.|++|+++|-|++++..+||||++|
T Consensus 398 ~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r-~~G~AVLLiS~dLDEil~lsDrIaVi 476 (501)
T COG3845 398 DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR-DAGKAVLLISEDLDEILELSDRIAVI 476 (501)
T ss_pred CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH-hcCCEEEEEehhHHHHHHhhheeeee
Confidence 45689999999999999999999999999999999999999999999999986 56999999999999999999999999
Q ss_pred cCCEEeeecChhHHH
Q 018938 248 AHGKLQLAMPMDKVK 262 (348)
Q Consensus 248 ~~G~i~~~g~~~~~~ 262 (348)
.+|+++...++++..
T Consensus 477 ~~Gri~~~~~~~~~t 491 (501)
T COG3845 477 YEGRIVGIVPPEEAT 491 (501)
T ss_pred eCCceecccccccCC
Confidence 999999988877643
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.92 E-value=1.9e-25 Score=198.91 Aligned_cols=145 Identities=23% Similarity=0.302 Sum_probs=106.9
Q ss_pred eeeeeeEEeCCC-EEEEECCCCCcHHHHHHHHh--------CCCcCCCceEEEcCeeccccccccccCcccccchhhhhh
Q 018938 55 INDFTLTLNAGD-RCLLVGSNGAGKTTILKIIG--------GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRRE 125 (348)
Q Consensus 55 l~~vsl~i~~Ge-~~~liG~NGsGKSTLlk~i~--------Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (348)
+-++||++.+|+ +++|+||||||||||+|+|+ |...|....+ .
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------------------~ 68 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------------------S 68 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------------------c
Confidence 457899999995 79999999999999999998 4332211000 0
Q ss_pred hhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCC
Q 018938 126 VAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 205 (348)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD 205 (348)
+++..+.. ...+ ..+ .......++|+||+|++.|+++ +.+|+++|+||||+|||
T Consensus 69 ~~~~~~~~-------------~~lg-~~~-----------~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD 122 (200)
T cd03280 69 LPVFENIF-------------ADIG-DEQ-----------SIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTD 122 (200)
T ss_pred CcCccEEE-------------EecC-chh-----------hhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence 00000000 0000 000 1234567899999999999988 48999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 206 VLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 206 ~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
+..+..++ .+++++. +.+.++|++||+. ++..+||+++.|++|++..+
T Consensus 123 ~~~~~~i~~~~l~~l~-~~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 123 PVEGAALAIAILEELL-ERGALVIATTHYG-ELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHHHHHHHHHHHH-hcCCEEEEECCHH-HHHHHHhcCCCeEEEEEEEe
Confidence 99999996 4677765 4589999999995 56689999999999999876
No 395
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=2.3e-25 Score=234.55 Aligned_cols=196 Identities=23% Similarity=0.355 Sum_probs=153.8
Q ss_pred CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--CCCceEEEcCeeccccccccccCcccccchhhhhhhh
Q 018938 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA 127 (348)
Q Consensus 50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (348)
+.+.+|+||+=-+.||-.+||+|+|||||||||++|+|-.. ...|.|.|+|.+..+ ..+++.++
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--------------~tF~R~~G 867 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--------------ETFARVSG 867 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--------------hhhccccc
Confidence 46789999999999999999999999999999999999321 124577888865321 23567788
Q ss_pred hcCCCccccccchHHHHH-h----ccC-CCCH----HHHHHHHHHcCCC--cCccC----CCCCHHHHHHHHHHHHHccC
Q 018938 128 FAGFEVPIQMDVSAEKMI-F----GVA-GIDP----QRRAELIKVLDID--LSWRM----HKVSDGQRRRVQICMGLLKP 191 (348)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~-~----~~~-~~~~----~~~~~~l~~l~l~--~~~~~----~~LSgGqrQRv~lAraL~~~ 191 (348)
|+.|+......++++|-+ + ..+ ..+. +.++++++.++++ .+.-+ ..||..||+|+.||--|+.+
T Consensus 868 YvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~ 947 (1391)
T KOG0065|consen 868 YVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVAN 947 (1391)
T ss_pred eeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecC
Confidence 886666555667776532 1 111 2222 3467889999986 23333 45999999999999999999
Q ss_pred C-cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh-hhhhCCEEEEEcC-CEEeeecChhH
Q 018938 192 F-KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG-LENWPSHIVYVAH-GKLQLAMPMDK 260 (348)
Q Consensus 192 P-~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~ 260 (348)
| .||+|||||||||..+...+++++++++. .|.|||++-|.+.- +.+-.|++++|+. |+.++.|+..+
T Consensus 948 P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 948 PSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9 99999999999999999999999999986 69999999999873 4455799999975 78999888754
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.4e-24 Score=205.60 Aligned_cols=216 Identities=24% Similarity=0.236 Sum_probs=145.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeecccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~~ 106 (348)
.-|.++|.+.+-. ++..+.+.||.|-.|..+||+||||-||||||+.|+.- -.|..=.+.++.+.+...
T Consensus 263 ~DIKiEnF~ISA~---------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad 333 (807)
T KOG0066|consen 263 MDIKIENFDISAQ---------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVAD 333 (807)
T ss_pred ccceeeeeeeecc---------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeec
Confidence 4589999998874 36789999999999999999999999999999999762 112222333333322111
Q ss_pred ccccccCccc-ccchhhhhhhhhcCCC-----ccccccchHH--------HHHhccCCCCHHHHHHHHHHcCCCc---Cc
Q 018938 107 TALTSSGDLS-YLGGEWRREVAFAGFE-----VPIQMDVSAE--------KMIFGVAGIDPQRRAELIKVLDIDL---SW 169 (348)
Q Consensus 107 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~l~l~~---~~ 169 (348)
.. .-+. .+..+. ++..+.... .......++. ++...-......++..++.-+|+.. ++
T Consensus 334 ~t----~Ai~tvl~aD~-kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 334 ST----SAIDTVLKADK-KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred Cc----HHHHHHHHhhH-HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 00 0000 000000 111110000 0001111111 1110001112345667888888762 56
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
+...+|||+|.||+|||||...|-+|.|||||++||.....++-++|+-| .+|++|||||..|+..+|+.|+.|++
T Consensus 409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~ 484 (807)
T KOG0066|consen 409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDN 484 (807)
T ss_pred CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhh
Confidence 67889999999999999999999999999999999999988888888765 46999999999999999999999999
Q ss_pred CEEeee-cChhHHH
Q 018938 250 GKLQLA-MPMDKVK 262 (348)
Q Consensus 250 G~i~~~-g~~~~~~ 262 (348)
-++.+. |+...+.
T Consensus 485 qkLhyYrGNY~~FK 498 (807)
T KOG0066|consen 485 QKLHYYRGNYTLFK 498 (807)
T ss_pred hhhhhhcchHHHHH
Confidence 998654 6655443
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=6.3e-24 Score=190.80 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=72.8
Q ss_pred CccCCCCCHHHHHHHHHHHHH----ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcC-cEEEEEecChhhhhhhCC
Q 018938 168 SWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG-ATIIYATHIFDGLENWPS 242 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL----~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g-~tviivtHd~~~~~~~~d 242 (348)
...+.+||+||||++.+|++| +.+|+++|+||||++||+..+..+++.|.++.++.| .|+|++||++..+..+||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 446789999999999877554 589999999999999999999999999999865434 589999999988888887
Q ss_pred --EEEEEcCCE
Q 018938 243 --HIVYVAHGK 251 (348)
Q Consensus 243 --~v~~l~~G~ 251 (348)
+|++|++|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 788888886
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.90 E-value=2.2e-23 Score=198.68 Aligned_cols=176 Identities=22% Similarity=0.334 Sum_probs=123.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhh-hc---------CC
Q 018938 62 LNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA-FA---------GF 131 (348)
Q Consensus 62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~ 131 (348)
..+|.++||+|+||-||||-+|+|+|.+.|.=|.- ++.+-|... +. .+-+.+++..+. .. +|
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeV-i~-----~FrGtELq~YF~~l~~g~~r~v~K~Q 168 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEV-IK-----RFRGTELQNYFKKLYEGELRAVHKPQ 168 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHH-HH-----HhhhhHHHHHHHHHHcCCcceecchH
Confidence 46899999999999999999999999998887641 121111100 00 000111111100 00 00
Q ss_pred Ccccc---ccchHHHHHhccCCCC-HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCC
Q 018938 132 EVPIQ---MDVSAEKMIFGVAGID-PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 205 (348)
Q Consensus 132 ~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD 205 (348)
.+... ..-++.+++- ..+ .-..+++.+.+++. .++.+++|||||-||++||.|++++.+++++|||||-||
T Consensus 169 YVd~iPk~~KG~v~elLk---~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLD 245 (591)
T COG1245 169 YVDLIPKVVKGKVGELLK---KVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245 (591)
T ss_pred HHHHHHHHhcchHHHHHH---hhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccccc
Confidence 00000 0000111110 111 12356788888886 588899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 206 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
...|-...+.++++++. +++||+|.||+..+..++|-|.++..
T Consensus 246 i~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 246 IRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999865 89999999999999999999998874
No 399
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=197.44 Aligned_cols=191 Identities=19% Similarity=0.298 Sum_probs=134.9
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
+.+|++++|+..=+. .+..+++|+||+|++|.-+.|+||||||||+|+|+++|+-+...|.+..-...-.
T Consensus 431 Dn~i~~e~v~l~tPt-------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--- 500 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT-------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--- 500 (659)
T ss_pred cceEEeeeeeecCCC-------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC---
Confidence 468999999998764 2467889999999999999999999999999999999997768888764322100
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc-------CCCCHHHHHHHHHHcCC----------C--cC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-------AGIDPQRRAELIKVLDI----------D--LS 168 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~l~l----------~--~~ 168 (348)
.+ +-|++|.+........+++++.. ...+.+++.+.++.+++ + .+
T Consensus 501 -----~~-----------lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~ 564 (659)
T KOG0060|consen 501 -----KD-----------LFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVD 564 (659)
T ss_pred -----Cc-----------eEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhh
Confidence 01 11222221111111111222111 11233445555554433 2 11
Q ss_pred -ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 169 -WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 169 -~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
.....||+||+||+++||.+.++|++-||||-||++|.+....+.+.++ +.|+|.|-|+|..... ++=|.++-|
T Consensus 565 ~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r----~~giT~iSVgHRkSL~-kfHd~~L~~ 639 (659)
T KOG0060|consen 565 WDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR----EMGITFISVGHRKSLW-KFHDYVLRM 639 (659)
T ss_pred ccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH----HcCCeEEEeccHHHHH-hhhhEEEEe
Confidence 1246899999999999999999999999999999999988777777665 5699999999998866 467888888
Q ss_pred cC
Q 018938 248 AH 249 (348)
Q Consensus 248 ~~ 249 (348)
+.
T Consensus 640 ~g 641 (659)
T KOG0060|consen 640 DG 641 (659)
T ss_pred cC
Confidence 65
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.89 E-value=2.4e-22 Score=189.61 Aligned_cols=179 Identities=26% Similarity=0.382 Sum_probs=137.0
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CcCCCceEEEcCeeccccccccccCcccccchhh
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--------HMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW 122 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--------~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~ 122 (348)
...+++|+||++++|++++|+|+|||||||+|++|+|. ++|++|.|.+--..+ +
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~------------~------ 456 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV------------S------ 456 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch------------h------
Confidence 45689999999999999999999999999999999984 457777665421110 0
Q ss_pred hhhhhhcCC--CccccccchHHHHHhccCCCCHHHHHHHHHHcCCC----cCccCCCCCHHHHHHHHHHHHHccCCcEEE
Q 018938 123 RREVAFAGF--EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLL 196 (348)
Q Consensus 123 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGqrQRv~lAraL~~~P~lLl 196 (348)
++.+- ++.+. ..+..+.+....+ +...+.+++...|+. ..+++++||-|||.|+.||++++..|.+++
T Consensus 457 ----a~iPge~Ep~f~-~~tilehl~s~tG-D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~ 530 (593)
T COG2401 457 ----ALIPGEYEPEFG-EVTILEHLRSKTG-DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLL 530 (593)
T ss_pred ----hccCcccccccC-chhHHHHHhhccC-chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEE
Confidence 01110 11111 1122222221111 334466788888875 235689999999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEcCCEEe
Q 018938 197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQ 253 (348)
Q Consensus 197 LDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~i~ 253 (348)
.||-.|+||+.+...+..-|.+++++.|.|++++||..+...++ -|.++.+.-|+..
T Consensus 531 iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 531 IDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999999999999999999999999999999998 7888888766653
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.88 E-value=2.8e-22 Score=175.24 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 174 VSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 174 LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
||+||+||++|||+|+ .+|+++|+|||+++||+..+..+.+.|.++.+. |.|+|++||+.+.+. .||+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998654 799999999998775 7999999864
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.87 E-value=4.9e-22 Score=171.13 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 173 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+||+||+||++||++|+. +|+++|+|||++|+|+..+..+.+.+.++.++ +.++|++||+.+.+. .+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 399999999999999986 78999999999999999999999999998766 889999999999886 589999885
Q ss_pred C
Q 018938 249 H 249 (348)
Q Consensus 249 ~ 249 (348)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.87 E-value=6.2e-22 Score=178.95 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=110.7
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhh-hcC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA-FAG 130 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 130 (348)
..+.+|++|++.+|++++|+||||+|||||+++|+=. . +...++ +++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~-------------------------------~la~~g~~vp 64 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-V-------------------------------LMAQIGCFVP 64 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-H-------------------------------HHHHhCCCcC
Confidence 5689999999999999999999999999999998721 0 001111 111
Q ss_pred CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH--ccCCcEEEeecc---CCCCC
Q 018938 131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI---TVDLD 205 (348)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL--~~~P~lLlLDEP---tsgLD 205 (348)
... ..+. ..++++..+++. +.....+|.|++|++.+++++ +.+|+++||||| |++||
T Consensus 65 a~~---~~~~--------------~~~~il~~~~l~-d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 65 CDS---ADIP--------------IVDCILARVGAS-DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ccc---EEEe--------------ccceeEeeeccc-cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 100 0000 012233334433 223578999999999999999 899999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 206 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
+.+.... .++.+.++.|.++|++||+ .++..+||++..+.+|++.....
T Consensus 127 ~~~~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9888543 3344444458899999996 77788999999999999977654
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4.2e-21 Score=179.23 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 172 HKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
..|||||+||++||++++. +|+++||||||++||+..+..+.+.|.++.+ +.|+|++||++..+ .+||++++|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~-~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVA-AMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHH-HhcCcEEEE
Confidence 3599999999999997654 9999999999999999999999999998753 78999999999865 689999999
Q ss_pred cCCEE
Q 018938 248 AHGKL 252 (348)
Q Consensus 248 ~~G~i 252 (348)
.+|..
T Consensus 246 ~~~~~ 250 (276)
T cd03241 246 EKEVE 250 (276)
T ss_pred EEecC
Confidence 88643
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=1.3e-20 Score=207.61 Aligned_cols=105 Identities=23% Similarity=0.314 Sum_probs=93.6
Q ss_pred HHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccC---CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 018938 158 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 231 (348)
Q Consensus 158 ~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~---P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivt 231 (348)
+.+..+||. +.++..+|||||.||+-||.-|..+ +.++||||||.||++.....+++.|+++. +.|.|||+|.
T Consensus 1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~-~~g~tvivie 1759 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLV-SLGHSVIYID 1759 (1809)
T ss_pred HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEe
Confidence 455566765 5788899999999999999999865 79999999999999999999999999997 5699999999
Q ss_pred cChhhhhhhCCEEEEEc------CCEEeeecChhHHHHh
Q 018938 232 HIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKEA 264 (348)
Q Consensus 232 Hd~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~ 264 (348)
||++.+.. ||+|+-|- .|+|++.|+|+++...
T Consensus 1760 H~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1760 HDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred CCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 99999986 99999985 4799999999999764
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.85 E-value=2.4e-21 Score=172.74 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=102.7
Q ss_pred eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-CCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938 56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP 134 (348)
Q Consensus 56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (348)
-..|+++.+|++++|+||||||||||+|+|++... ...|.. +.. ....+++..+
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~---------------------~~~-~~~~i~~~dq--- 74 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCF---------------------VPA-ESASIPLVDR--- 74 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCC---------------------ccc-cccccCCcCE---
Confidence 44567777999999999999999999999995321 111110 000 0001111000
Q ss_pred ccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH
Q 018938 135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 214 (348)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~ 214 (348)
.... ... . + ......+.+|.+++| +..+.+++.+|+++|+||||+|||+..+..+..
T Consensus 75 i~~~---------~~~-~-d-----------~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 75 IFTR---------IGA-E-D-----------SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred EEEE---------ecC-c-c-----------cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 0000 000 0 0 112334567777776 666678889999999999999999998888765
Q ss_pred -HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 215 -FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 215 -~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
+++.+. +.+.++|++||+.+++. .|+++..+..|++...+...+
T Consensus 132 ~ll~~l~-~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 132 AVLEHLL-EKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHH-hcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 455554 55899999999987766 688888899999887776433
No 407
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.84 E-value=1.9e-20 Score=181.18 Aligned_cols=189 Identities=18% Similarity=0.323 Sum_probs=124.1
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|.++|+-.--+. ...++..++|+|++|-.+.|+||||||||+|+|+|.|+.+...|...+--
T Consensus 482 I~lenIpvItP~--------~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~---------- 543 (728)
T KOG0064|consen 482 IILENIPVITPA--------GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR---------- 543 (728)
T ss_pred eEEecCceeccC--------cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC----------
Confidence 778888776653 45688999999999999999999999999999999999766555432210
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC----------c-CccCCCCCHHHH
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID----------L-SWRMHKVSDGQR 179 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----------~-~~~~~~LSgGqr 179 (348)
...+-|+++. ..++......+.....+.+++. ..+........++..+.++ . ...-..||||||
T Consensus 544 -~~~mFYIPQR--PYms~gtlRDQIIYPdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGek 618 (728)
T KOG0064|consen 544 -PNNIFYIPQR--PYMSGGTLRDQIIYPDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEK 618 (728)
T ss_pred -CcceEeccCC--CccCcCcccceeecCCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHH
Confidence 0111122111 0011000000111111233332 1233444444555554432 1 011256999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
||+++||.+.++|+.-+|||.||+..+.....+++..+ ..|.+.|-|||...... +-.+++-.
T Consensus 619 QR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~~gi~llsithrpslwk-~h~~ll~~ 681 (728)
T KOG0064|consen 619 QRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPSLWK-YHTHLLEF 681 (728)
T ss_pred HHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH----hcCceEEEeecCccHHH-HHHHHHhc
Confidence 99999999999999999999999999988777777665 56999999999998775 34454444
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=3e-19 Score=180.55 Aligned_cols=106 Identities=22% Similarity=0.315 Sum_probs=92.9
Q ss_pred HHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 018938 158 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 231 (348)
Q Consensus 158 ~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivt 231 (348)
+.|..+||. +.++..+|||||.|||-||.-|.... -+.||||||+||-..-.+.+++.|.++.. .|-|||+|.
T Consensus 804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIE 882 (935)
T COG0178 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIE 882 (935)
T ss_pred HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 344445664 56788999999999999999999877 99999999999999999999999999975 699999999
Q ss_pred cChhhhhhhCCEEEEEc------CCEEeeecChhHHHHhh
Q 018938 232 HIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 232 Hd~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~ 265 (348)
|+++.+. .||+|+-|- .|+|++.|+|+++.+..
T Consensus 883 HNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 883 HNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred cccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHhCc
Confidence 9999885 699999883 58999999999998743
No 409
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.82 E-value=4.5e-20 Score=164.12 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=86.8
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
..+++|++|+. |++++|+||||||||||+|+|+|.... ...|..+... ...++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~v~a~------------------~~~~q-- 66 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL-----AQAGAPVCAS------------------SFELP-- 66 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH-----HHcCCEEecC------------------ccCcc--
Confidence 35677776665 799999999999999999999985321 1123221100 00111
Q ss_pred CccccccchHHH-HHhccCCC--CHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHH
Q 018938 132 EVPIQMDVSAEK-MIFGVAGI--DPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208 (348)
Q Consensus 132 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~ 208 (348)
....+..++..+ ...+.... ...+..++++.++. .+|+++|+||||+|+|+..
T Consensus 67 ~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~------------------------~~p~llllDEp~~glD~~~ 122 (199)
T cd03283 67 PVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK------------------------GEPVLFLLDEIFKGTNSRE 122 (199)
T ss_pred cceEEEeccchhccccccChHHHHHHHHHHHHHhccC------------------------CCCeEEEEecccCCCCHHH
Confidence 011111122211 11111100 01122333333321 5999999999999999999
Q ss_pred HHHHH-HHHHHHHHhcCcEEEEEecChhhhhhh--CCEEEEE
Q 018938 209 RADLL-RFLRKECEERGATIIYATHIFDGLENW--PSHIVYV 247 (348)
Q Consensus 209 ~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~--~d~v~~l 247 (348)
+..+. .+++.+. +.+.|+|++||+++++..+ .++|-.+
T Consensus 123 ~~~l~~~ll~~l~-~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 123 RQAASAAVLKFLK-NKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHH-HCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 98775 4677775 4589999999999998766 4455443
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.82 E-value=9.9e-20 Score=162.42 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=98.3
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
+..+.+|++|++++|++++|+||||+||||++|+|+++... .++++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------------------------------a~~G~~- 61 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------------------------------AQIGCF- 61 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------------------------------HHcCCC-
Confidence 35789999999999999999999999999999999875210 011110
Q ss_pred CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHH
Q 018938 131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208 (348)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~ 208 (348)
-......++.. +.+...++.. ..+..+++|+|++|+ ..+.+++.+|+++|||||++|+|+..
T Consensus 62 -vpa~~~~l~~~--------------d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 62 -VPAEYATLPIF--------------NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred -cchhhcCccCh--------------hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 00000001110 1112222222 234567899999975 55566889999999999999999977
Q ss_pred HHHH-HHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938 209 RADL-LRFLRKECEERGATIIYATHIFDGLENWPS 242 (348)
Q Consensus 209 ~~~l-~~~l~~l~~~~g~tviivtHd~~~~~~~~d 242 (348)
...+ ...++.+. +.|.++|++||+.+++..+++
T Consensus 126 ~~~l~~~il~~l~-~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 126 GFAISLAILECLI-KKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHHHHHH-hcCCEEEEECChHHHHHHhhc
Confidence 6665 45566665 459999999999999987664
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=9.2e-20 Score=192.72 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=92.0
Q ss_pred HHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh
Q 018938 160 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 234 (348)
Q Consensus 160 l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~ 234 (348)
+..+++. +++.+.+|||||+|||.||++|+.+| +++||||||+|||+..+..++++|+++.+ .|.|||+||||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH
Confidence 4445654 46789999999999999999999986 89999999999999999999999999964 599999999999
Q ss_pred hhhhhhCCEEEEE------cCCEEeeecChhHHHH
Q 018938 235 DGLENWPSHIVYV------AHGKLQLAMPMDKVKE 263 (348)
Q Consensus 235 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 263 (348)
+++. +||+|++| ++|+|++.|+++++..
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 9986 89999999 8999999999988754
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.81 E-value=1.2e-19 Score=192.31 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=93.4
Q ss_pred HHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938 159 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 233 (348)
Q Consensus 159 ~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd 233 (348)
.++.+|+. +++++.+|||||+|||+||++|+.+| +++||||||+|||+..+..++++|+++. +.|.|||+||||
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~-~~G~TVIvVeH~ 550 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLR-DLGNTLIVVEHD 550 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCC
Confidence 34556664 47789999999999999999999997 9999999999999999999999999996 469999999999
Q ss_pred hhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938 234 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 234 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 264 (348)
++++. .||+|++| ++|++++.|+++++...
T Consensus 551 ~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 551 EDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred HHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 99986 69999999 99999999999988643
No 413
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=1.2e-19 Score=191.76 Aligned_cols=198 Identities=23% Similarity=0.318 Sum_probs=152.2
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeeccccccccccCcccccchhhhhhhhh
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF 128 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
..+|+|+|.-+++|+.+.++||.||||||||++++|-+. -.+|+|.++|.+...... ++.++|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--------------~~~~aY 193 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--------------KKTVAY 193 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--------------CceEEe
Confidence 469999999999999999999999999999999999542 224578888875322111 233445
Q ss_pred cCCCccccccchHHHHH---hccC-------CCCH-H----HHHHHHHHcCCCc-------CccCCCCCHHHHHHHHHHH
Q 018938 129 AGFEVPIQMDVSAEKMI---FGVA-------GIDP-Q----RRAELIKVLDIDL-------SWRMHKVSDGQRRRVQICM 186 (348)
Q Consensus 129 ~~~~~~~~~~~~~~~~~---~~~~-------~~~~-~----~~~~~l~~l~l~~-------~~~~~~LSgGqrQRv~lAr 186 (348)
.+++......+++.+.+ .... ...+ + ..+.+++.+|++. +....-.|||||+||.+|-
T Consensus 194 ~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E 273 (1391)
T KOG0065|consen 194 NSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGE 273 (1391)
T ss_pred ccccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeee
Confidence 55544444445444322 1111 1122 1 2346788899862 3446789999999999999
Q ss_pred HHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 187 aL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
+++.+|+++.+||+|.|||..+.-++.+.|+++++..+.|++++-|... ++-.+.|.|++|.+|++++.|+.+++..
T Consensus 274 ~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 274 MLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 9999999999999999999999999999999999888899888887754 5667889999999999999999998764
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.8e-18 Score=160.95 Aligned_cols=77 Identities=26% Similarity=0.353 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938 171 MHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 241 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 241 (348)
...||+||+|+++||++|+ .+|+++||||||++||+..+..+++.|.++ + .+++++|+.+.+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence 3568999999999999985 799999999999999999999999999764 2 4677788878888888
Q ss_pred ---CEEEEEcCCEE
Q 018938 242 ---SHIVYVAHGKL 252 (348)
Q Consensus 242 ---d~v~~l~~G~i 252 (348)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.76 E-value=5e-18 Score=161.08 Aligned_cols=175 Identities=22% Similarity=0.344 Sum_probs=124.8
Q ss_pred CCCceeeeeeeEEeCCC-----EEEEECCCCCcHHHHHHHHhCCCcCCCce-EEEcCeeccccccccccCcccccchhhh
Q 018938 50 GSTPLINDFTLTLNAGD-----RCLLVGSNGAGKTTILKIIGGKHMVEPEM-VKVLGRSAFHDTALTSSGDLSYLGGEWR 123 (348)
Q Consensus 50 g~~~~l~~vsl~i~~Ge-----~~~liG~NGsGKSTLlk~i~Gl~~~~~G~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~ 123 (348)
+.+.-+.++.|.|+.|+ ++..+|+||.|||||+++++|.++|+.|. +-... +++-++.+
T Consensus 347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln--------------VSykpqki- 411 (592)
T KOG0063|consen 347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN--------------VSYKPQKI- 411 (592)
T ss_pred cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc--------------eecccccc-
Confidence 34567889999999885 68899999999999999999999888762 21111 11111111
Q ss_pred hhhhhcCCCccccccchHHHHHhc---cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEee
Q 018938 124 REVAFAGFEVPIQMDVSAEKMIFG---VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198 (348)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLD 198 (348)
......++..++.. -......-+.++++-|.++ .++.+..|||||.|||+||.+|=..+++.+.|
T Consensus 412 ----------spK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliD 481 (592)
T KOG0063|consen 412 ----------SPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLID 481 (592)
T ss_pred ----------CccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEec
Confidence 00011111111110 0001222333444444443 35678899999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 199 EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
||.+-||.+.+..--..++++.-..++|-.+|.||+-.+..++||+++.+.
T Consensus 482 EpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 482 EPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred CchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 999999999999888888887655688999999999999999999988753
No 416
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.71 E-value=6.7e-18 Score=148.55 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=59.7
Q ss_pred CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHIVY 246 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~ 246 (348)
....++||+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||+.+ +..+|++.--
T Consensus 56 ~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~~~~ 133 (185)
T smart00534 56 AQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADEHPG 133 (185)
T ss_pred hccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhcCcc
Confidence 34567899998874444432 4599999999999999999877764 5566665434889999999996 5667875433
Q ss_pred EcCCEE
Q 018938 247 VAHGKL 252 (348)
Q Consensus 247 l~~G~i 252 (348)
+.++.+
T Consensus 134 v~~~~~ 139 (185)
T smart00534 134 VRNLHM 139 (185)
T ss_pred ceEEEE
Confidence 444443
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.71 E-value=1.5e-17 Score=149.74 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=94.5
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
..+.+|++|+..+ ++++|+||||||||||+|+|++.... +. .|..+. . ....+++..
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp---------------~-~~~~i~~~~- 74 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP---------------A-SKAEIGVVD- 74 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec---------------c-ccceeccee-
Confidence 4588999999987 89999999999999999999874311 00 010000 0 000111110
Q ss_pred CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHH----HHHHHHHH--ccCCcEEEeecc---CC
Q 018938 132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRR----RVQICMGL--LKPFKVLLLDEI---TV 202 (348)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQ----Rv~lAraL--~~~P~lLlLDEP---ts 202 (348)
.++..+ . ...++|.|+.+ ++.|++++ +.+|+++||||| |+
T Consensus 75 --~i~~~~------------~-----------------~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 75 --RIFTRI------------G-----------------ASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred --eEeccC------------C-----------------chhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 000000 0 01234444443 33455555 579999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 203 DLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 203 gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
++|.... ...+++.+.+..+.++|++||+.+ +..++|++..+.+|++......+++
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYHE-LTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcHH-HHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 9998653 233444443333889999999975 5568898877888888776655544
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.67 E-value=5.2e-16 Score=143.79 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=88.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI 145 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (348)
.-++|+||||||||||+++|+|++.|.+|++.++|+++..... ..++...+.+.++. .....+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~----------~~ei~~~~~~~~q~-~~~~r~------ 174 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDE----------RSEIAGCVNGVPQH-DVGIRT------ 174 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchh----------HHHHHHHhcccccc-cccccc------
Confidence 5689999999999999999999999999999999986521000 00111111111110 000000
Q ss_pred hccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCc
Q 018938 146 FGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 225 (348)
Q Consensus 146 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~ 225 (348)
.-|.+=.|.....+.+++++|+++|+|||++ .+.+..+++.+ + .|.
T Consensus 175 --------------------------~v~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~-~G~ 220 (270)
T TIGR02858 175 --------------------------DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H-AGV 220 (270)
T ss_pred --------------------------cccccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-CCC
Confidence 0000001111123333447999999999974 23445555554 3 499
Q ss_pred EEEEEecChhh--h-----------hhhCCEEEEEcCCEEeeecChhHH
Q 018938 226 TIIYATHIFDG--L-----------ENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 226 tviivtHd~~~--~-----------~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
+||++||+.+. + ..+++|+++|++|+ ..|.++++
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 99999997665 4 36789999999876 55665554
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.65 E-value=1.2e-15 Score=137.15 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHH-HHHHHHHHHHHh--cCcEEEEEecChhhhhhhC
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA-DLLRFLRKECEE--RGATIIYATHIFDGLENWP 241 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~-~l~~~l~~l~~~--~g~tviivtHd~~~~~~~~ 241 (348)
-+.||+++|++++.+|.++|||||++|+|+.... .+..+++.+.+. .+.++|++||+.+.+..+.
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 5679999999999999999999999999997644 446788887643 1358999999999987653
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.65 E-value=2.9e-16 Score=164.47 Aligned_cols=133 Identities=22% Similarity=0.278 Sum_probs=92.1
Q ss_pred eeeeEEeCC-CEEEEECCCCCcHHHHHHHHhCC-CcCCCce-EEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938 57 DFTLTLNAG-DRCLLVGSNGAGKTTILKIIGGK-HMVEPEM-VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV 133 (348)
Q Consensus 57 ~vsl~i~~G-e~~~liG~NGsGKSTLlk~i~Gl-~~~~~G~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (348)
.+|+++..+ ++++|+||||+|||||||+|+|. +.+..|. |... . . ..+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~-------~----~-----------~~~~~~---- 366 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPAN-------E----H-----------SEIPYF---- 366 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCC-------c----c-----------ccccch----
Confidence 479999888 89999999999999999999986 3333331 0000 0 0 000000
Q ss_pred cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHH
Q 018938 134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 213 (348)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~ 213 (348)
... + ...... +. ....+++||+||++++.|++++ .+|.++|||||++|+||.....+.
T Consensus 367 --------d~i-~--~~i~~~--~s--------i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala 424 (771)
T TIGR01069 367 --------EEI-F--ADIGDE--QS--------IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALA 424 (771)
T ss_pred --------hhe-e--eecChH--hH--------HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHH
Confidence 000 0 000100 11 1234678999999999999886 789999999999999999999994
Q ss_pred -HHHHHHHHhcCcEEEEEecChhhhh
Q 018938 214 -RFLRKECEERGATIIYATHIFDGLE 238 (348)
Q Consensus 214 -~~l~~l~~~~g~tviivtHd~~~~~ 238 (348)
.++..+. +.|.++|++||+.++..
T Consensus 425 ~aiLe~l~-~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 425 ISILEYLL-KQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHHH-hcCCEEEEECChHHHHH
Confidence 6666665 56899999999988643
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.62 E-value=2.5e-15 Score=135.48 Aligned_cols=86 Identities=27% Similarity=0.353 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH----ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 018938 155 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 230 (348)
Q Consensus 155 ~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL----~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviiv 230 (348)
...+.+....+.. ..||||||.+++||-.| ..+.+++|||||.++||...+..+.++|+++.+ +.-+|++
T Consensus 122 ~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~ 195 (220)
T PF02463_consen 122 DLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIIT 195 (220)
T ss_dssp HHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE
T ss_pred ccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence 3444455444432 39999999999999765 357899999999999999999999999998743 4789999
Q ss_pred ecChhhhhhhCCEEEEE
Q 018938 231 THIFDGLENWPSHIVYV 247 (348)
Q Consensus 231 tHd~~~~~~~~d~v~~l 247 (348)
||+...+. .||+.+.+
T Consensus 196 Th~~~~~~-~a~~~~~v 211 (220)
T PF02463_consen 196 THNPEMFE-DADKLIGV 211 (220)
T ss_dssp -S-HHHHT-T-SEEEEE
T ss_pred cccccccc-cccccccc
Confidence 99977665 57887654
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.58 E-value=7.1e-15 Score=132.66 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=87.0
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC-CCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG-KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G-l~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
..+..|++|++.+|++++|+||||+||||++++|++ .+.+..|.....-. ..+.+..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-----------~~~~~~~----------- 75 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-----------ATLSIFD----------- 75 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-----------eEEeccc-----------
Confidence 468899999999999999999999999999999999 45556654322110 0000000
Q ss_pred CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHH
Q 018938 131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 210 (348)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~ 210 (348)
.++..+ ...+ . .....++++ .+-+++.-+.--+.+|.++|||||.+|.|+....
T Consensus 76 ---~i~~~~---------~~~d--~-----------~~~~~StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~ 129 (222)
T cd03287 76 ---SVLTRM---------GASD--S-----------IQHGMSTFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGI 129 (222)
T ss_pred ---eEEEEe---------cCcc--c-----------cccccchHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHH
Confidence 000000 0000 0 000011111 2333343333446789999999998888876666
Q ss_pred HH-HHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938 211 DL-LRFLRKECEERGATIIYATHIFDGLEN 239 (348)
Q Consensus 211 ~l-~~~l~~l~~~~g~tviivtHd~~~~~~ 239 (348)
.+ +.+++.+.+..+.++|++||+.+....
T Consensus 130 ~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 130 AIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 64 566666654448899999999998653
No 423
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.56 E-value=9.3e-15 Score=153.54 Aligned_cols=77 Identities=22% Similarity=0.098 Sum_probs=65.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
..+++||+||+|++.|++++ .+|.++|||||++|+||.....+.. ++..+. +.|.++|++||+.+.+...+++..++
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~-~~~~~vIitTH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR-KRGAKIIATTHYKELKALMYNREGVE 463 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECChHHHHHHHhcCCCeE
Confidence 45688999999999999998 8999999999999999999988865 555554 56899999999999888777765543
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.55 E-value=1.1e-14 Score=138.67 Aligned_cols=176 Identities=23% Similarity=0.282 Sum_probs=117.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccc-hhhhhh---hhhcCCCcccccc
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLG-GEWRRE---VAFAGFEVPIQMD 138 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~ 138 (348)
.+|++.|++|.||-||||-+++++|-++|.-|.- .++ +.|. ..+.+.. .+++.. +.-.......-+.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~p-p~w~-------~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNP-PDWQ-------EILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCC-cchH-------HHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 4799999999999999999999999988876641 000 0000 0011110 011100 0000000000000
Q ss_pred chHHHHH-------hcc-CC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH
Q 018938 139 VSAEKMI-------FGV-AG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL 207 (348)
Q Consensus 139 ~~~~~~~-------~~~-~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~ 207 (348)
-+..+. -+. .. .+.....++++.+.+. +++.+.+||||+-||.+||.+.+++.++.++|||.+.||..
T Consensus 169 -yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVK 247 (592)
T KOG0063|consen 169 -YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVK 247 (592)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHH
Confidence 000000 000 00 0112344566666654 57788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 208 ARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 208 ~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
.+..-...|+.+.. -..=||+|.||+..+..+.|-+.++..
T Consensus 248 QRLkaA~~IRsl~~-p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 248 QRLKAAITIRSLIN-PDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HhhhHHHHHHHhhC-CCCeEEEEEeechHHHhhhcceeEEec
Confidence 99999999999875 467899999999999999999998874
No 425
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=1.6e-14 Score=157.34 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=76.4
Q ss_pred CccCCCCCHHHHHHHHHHHHHcc----------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 237 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~----------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 237 (348)
.+++.+|||||++||+||+||+. +|++|||||||++||+.++..+++.|.++.. .|++|+||||++++.
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFR 1023 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH
Confidence 45689999999999999999986 7999999999999999999999999999875 699999999999999
Q ss_pred hhhCCEEEEEcCC
Q 018938 238 ENWPSHIVYVAHG 250 (348)
Q Consensus 238 ~~~~d~v~~l~~G 250 (348)
..+||+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 9999999999754
No 426
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.53 E-value=2.3e-14 Score=146.42 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=70.5
Q ss_pred CCCCHHHHHHHHHHHHHccC----CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 172 HKVSDGQRRRVQICMGLLKP----FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~----P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
..|||||+||++||++++.. |++|||||||+|||+..+..+.+.|+++. + +.+||+|||++..+. +||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~~~~~-~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLPQVAA-HADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChHHHHH-hcCeEEEE
Confidence 36899999999999999985 69999999999999999999999999986 3 799999999999885 89999999
Q ss_pred cCCE
Q 018938 248 AHGK 251 (348)
Q Consensus 248 ~~G~ 251 (348)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8864
No 427
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.52 E-value=9.8e-14 Score=126.18 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--------
Q 018938 173 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHIFDG-------- 236 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgL----D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~-------- 236 (348)
.+|+++.++-.+++.+-. +|+++++||||+++ |+..+..++++++.+.+ .|.|+++ ||+...
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~~~~~ 172 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDESVLTI 172 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eeccccccccccee
Confidence 366666666555554433 69999999999999 88888899999998864 4776555 566543
Q ss_pred hhhhCCEEEEEc
Q 018938 237 LENWPSHIVYVA 248 (348)
Q Consensus 237 ~~~~~d~v~~l~ 248 (348)
+..+||-|+.|+
T Consensus 173 ~~~~~DgvI~L~ 184 (230)
T PRK08533 173 LRTAATMLIRLE 184 (230)
T ss_pred EEEeeeEEEEEE
Confidence 244566666665
No 428
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.50 E-value=2.9e-13 Score=133.26 Aligned_cols=186 Identities=16% Similarity=0.235 Sum_probs=111.4
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
..+++++ |++.+|++++|+|+||+|||||+++|+|+..++.|.|.+.|+....-..+.. ..+. ...+++.+.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~-~~l~--~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIE-RDLG--PEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHH-hhcC--hhhhcCeEEEEEC
Confidence 5689999 9999999999999999999999999999999999988887653211000000 0000 0112223333321
Q ss_pred CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCH-HHHHHHHHHHHHccCCcEEEeecc--CCCCCHHH
Q 018938 132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSD-GQRRRVQICMGLLKPFKVLLLDEI--TVDLDVLA 208 (348)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg-GqrQRv~lAraL~~~P~lLlLDEP--tsgLD~~~ 208 (348)
.... ....+.... ..-.+.+.+..-|.+.--...+|+- -|-+| .|+ +.+.|| |+|+||..
T Consensus 222 ~~~~----~~~r~~~~~---~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G~dp~~ 284 (438)
T PRK07721 222 SDQP----ALMRIKGAY---TATAIAEYFRDQGLNVMLMMDSVTRVAMAQR-EIG---------LAVGEPPTTKGYTPSV 284 (438)
T ss_pred CCCC----HHHHHHHHH---HHHHHHHHHHHCCCcEEEEEeChHHHHHHHH-HHH---------HhcCCCCccccCCHHH
Confidence 1100 011110000 0011223332223210001122221 11111 011 123454 79999999
Q ss_pred HHHHHHHHHHHHH-hcCc-----EEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 209 RADLLRFLRKECE-ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 209 ~~~l~~~l~~l~~-~~g~-----tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
...+.+++.++.+ +.|. ||++.+||+++ .+||++..|.+|+|+.++...+
T Consensus 285 ~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 285 FAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence 9999999999864 3474 99999999995 7999999999999999887654
No 429
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=1.3e-13 Score=124.21 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=88.8
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
..+-+|++|+..+|++++|+||||+||||+++++++...... .|-.+ +... ..+.+ +
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-----~G~~v---------------pa~~-~~i~~--~ 73 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-----MGMDV---------------PAKS-MRLSL--V 73 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-----cCCcc---------------Cccc-cEecc--c
Confidence 468899999999999999999999999999999987421100 00000 0000 00000 0
Q ss_pred CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHH
Q 018938 132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 211 (348)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~ 211 (348)
. .++..+.. . +. .....++++ -|-+++.-....+.+|.++|||||++|+|+.....
T Consensus 74 ~-~i~~~~~~----------~-d~-----------~~~~~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 74 D-RIFTRIGA----------R-DD-----------IMKGESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred c-EEEEecCc----------c-cc-----------cccCcchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 0 00000000 0 00 000011122 24444444444467899999999999999999988
Q ss_pred HHHH-HHHHHHhcCcEEEEEecChhhhhhhC
Q 018938 212 LLRF-LRKECEERGATIIYATHIFDGLENWP 241 (348)
Q Consensus 212 l~~~-l~~l~~~~g~tviivtHd~~~~~~~~ 241 (348)
+... ++.+.+..+.++|++||+++.+..++
T Consensus 130 la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 130 IAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 8877 56665433899999999999988776
No 430
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.48 E-value=4.5e-14 Score=144.40 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=69.6
Q ss_pred cCCCCCHHHHHHHHHHHHHc----------cCCcEEEeeccC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938 170 RMHKVSDGQRRRVQICMGLL----------KPFKVLLLDEIT-VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 238 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~----------~~P~lLlLDEPt-sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 238 (348)
.+.+|||||+||++||+||+ .+|++||||||| ++||+.++..+.++|.++ .|.|||+|||+.+..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~~~- 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDHDP- 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchhch-
Confidence 45789999999999999987 599999999998 789999999999999987 378999999997665
Q ss_pred hhCCEEEEEcC-CEE
Q 018938 239 NWPSHIVYVAH-GKL 252 (348)
Q Consensus 239 ~~~d~v~~l~~-G~i 252 (348)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 56899999986 554
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.47 E-value=2.5e-13 Score=121.93 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=44.4
Q ss_pred CCCCHH--HHHHHHHHHHHccCCcEEEeeccC-----CCCCHHHHHHHHHHHHHHH
Q 018938 172 HKVSDG--QRRRVQICMGLLKPFKVLLLDEIT-----VDLDVLARADLLRFLRKEC 220 (348)
Q Consensus 172 ~~LSgG--qrQRv~lAraL~~~P~lLlLDEPt-----sgLD~~~~~~l~~~l~~l~ 220 (348)
+..||+ |++++.||++++.+|+++++|||| ++||+..++.+.+.+++++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 344444 999999999999999999999999 9999999999999999875
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.47 E-value=1.5e-13 Score=139.60 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 173 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
.|||||+|||+||++++. +|+++|||||++|||+.+...+.+.|+++.+ +.+||+|||++..+ .+||+.+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEe
Confidence 479999999999999997 6899999999999999999999999999853 68999999999876 6999999998
Q ss_pred CCE
Q 018938 249 HGK 251 (348)
Q Consensus 249 ~G~ 251 (348)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 753
No 433
>PRK13695 putative NTPase; Provisional
Probab=99.46 E-value=9e-14 Score=120.95 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=65.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeec--cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDE--ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 246 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDE--PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~ 246 (348)
+....+||+++-++.+++..+.+|++||+|| |+.++|+. +.+.+.++. +.+.++|+++|+ ..+..++|++..
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~-~~~~~~i~v~h~-~~~~~~~~~i~~ 147 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVL-DSEKPVIATLHR-RSVHPFVQEIKS 147 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHH-hCCCeEEEEECc-hhhHHHHHHHhc
Confidence 3456799999999999999999999999999 55566654 455555555 458999999999 456678999999
Q ss_pred EcCCEEeee
Q 018938 247 VAHGKLQLA 255 (348)
Q Consensus 247 l~~G~i~~~ 255 (348)
+.+|+|...
T Consensus 148 ~~~~~i~~~ 156 (174)
T PRK13695 148 RPGGRVYEL 156 (174)
T ss_pred cCCcEEEEE
Confidence 999999765
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.44 E-value=6.1e-13 Score=122.00 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred CCCCHHH--------HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHH-HHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938 172 HKVSDGQ--------RRRVQICMGLLKPFKVLLLDEITVDLDVLARAD-LLRFLRKECEERGATIIYATHIFDGLENWPS 242 (348)
Q Consensus 172 ~~LSgGq--------rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~-l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 242 (348)
..+|||+ +||+++||++..++.|.+| ||+.+|..+... ++ +.++. ..+.|.|++||++.... ..|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~-~~~~~~ivls~~la~~~-~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFK-GTGNMELVLDRRLAERR-IFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHh-cCCCcEEEEchHHhhCC-CCC
Confidence 3469999 9999999999999999999 999999644332 33 34432 34789999999999886 579
Q ss_pred EEEEEcCCEEe
Q 018938 243 HIVYVAHGKLQ 253 (348)
Q Consensus 243 ~v~~l~~G~i~ 253 (348)
.|.+|+.|.+.
T Consensus 202 aI~vl~s~sr~ 212 (249)
T cd01128 202 AIDILKSGTRK 212 (249)
T ss_pred eEEEcCCCCcc
Confidence 99999999973
No 435
>PRK03918 chromosome segregation protein; Provisional
Probab=99.42 E-value=3.9e-13 Score=144.39 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=68.9
Q ss_pred ccCCCCCHHHHH------HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938 169 WRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 242 (348)
Q Consensus 169 ~~~~~LSgGqrQ------Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 242 (348)
.++..|||||+| |++||++++.+|+++||||||++||+..+..+.++|..+.. .+.+||+||||.++. .+||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~~~-~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEELK-DAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHH-HhCC
Confidence 467899999999 55666788899999999999999999999999999998764 478999999999855 6899
Q ss_pred EEEEEc
Q 018938 243 HIVYVA 248 (348)
Q Consensus 243 ~v~~l~ 248 (348)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
No 436
>PRK01156 chromosome segregation protein; Provisional
Probab=99.42 E-value=6.5e-13 Score=142.96 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=68.7
Q ss_pred cCCCCCHHHHHHHHH------HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcC--cEEEEEecChhhhhhhC
Q 018938 170 RMHKVSDGQRRRVQI------CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG--ATIIYATHIFDGLENWP 241 (348)
Q Consensus 170 ~~~~LSgGqrQRv~l------AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g--~tviivtHd~~~~~~~~ 241 (348)
.+..|||||++|++| |++|+.+|++++|||||++||+..+..+.++|....+..+ .|||+||||.+++ .+|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence 578999999999975 5999999999999999999999999999999986554433 4899999999987 589
Q ss_pred CEEEEEc
Q 018938 242 SHIVYVA 248 (348)
Q Consensus 242 d~v~~l~ 248 (348)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999987
No 437
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.41 E-value=5.7e-13 Score=144.81 Aligned_cols=81 Identities=23% Similarity=0.160 Sum_probs=74.9
Q ss_pred CccCCCCCHHHHHHHHHHHHHcc--------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLK--------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN 239 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~--------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~ 239 (348)
.+++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.+ .|+||+||||..++..+
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHHh
Confidence 46789999999999999999995 8999999999999999999999999999864 59999999999999999
Q ss_pred hCCEEEEEcC
Q 018938 240 WPSHIVYVAH 249 (348)
Q Consensus 240 ~~d~v~~l~~ 249 (348)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 9999888865
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.41 E-value=1.8e-12 Score=113.37 Aligned_cols=80 Identities=13% Similarity=0.013 Sum_probs=67.8
Q ss_pred CccCCCCCHHHHH------HHHHHHHHccCCcEEEeeccCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEecChhh--
Q 018938 168 SWRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLD---VLARADLLRFLRKECEERGATIIYATHIFDG-- 236 (348)
Q Consensus 168 ~~~~~~LSgGqrQ------Rv~lAraL~~~P~lLlLDEPtsgLD---~~~~~~l~~~l~~l~~~~g~tviivtHd~~~-- 236 (348)
+..+..+|+|++| ....+.+...+|+++++|||++.+| ...+..+.+++..+.+ .|.|+|+++|+...
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEG 144 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCC
Confidence 5567889999998 5555556778999999999999999 8888888888888764 59999999998875
Q ss_pred -------hhhhCCEEEEEc
Q 018938 237 -------LENWPSHIVYVA 248 (348)
Q Consensus 237 -------~~~~~d~v~~l~ 248 (348)
+..+||.++.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 678899999886
No 439
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=1.1e-12 Score=145.70 Aligned_cols=73 Identities=23% Similarity=0.197 Sum_probs=66.0
Q ss_pred cCCCCCHHHHH------HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEecChhhhhh
Q 018938 170 RMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE----ERGATIIYATHIFDGLEN 239 (348)
Q Consensus 170 ~~~~LSgGqrQ------Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~----~~g~tviivtHd~~~~~~ 239 (348)
..+.|||||+| |++||+||+.+|++|||||||++||+.+...+.+.|..+.. ..|.|||+||||++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 45789999999 99999999999999999999999999999999999988742 247899999999999998
Q ss_pred hCC
Q 018938 240 WPS 242 (348)
Q Consensus 240 ~~d 242 (348)
+|.
T Consensus 1276 ~~~ 1278 (1311)
T TIGR00606 1276 LGR 1278 (1311)
T ss_pred Hhh
Confidence 863
No 440
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.36 E-value=2.6e-12 Score=125.70 Aligned_cols=164 Identities=14% Similarity=0.165 Sum_probs=114.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.++.+.++..|.. +..+++.+ |.+.+|++++|+|+||+|||||+++|+|...++.|.|.+.|+...
T Consensus 130 ~~~r~~i~~~l~T--------GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~----- 195 (432)
T PRK06793 130 AFEREEITDVFET--------GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR----- 195 (432)
T ss_pred chheechhhccCC--------CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----
Confidence 4677888888852 35788885 999999999999999999999999999998887776655553210
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICM 186 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAr 186 (348)
+ ..+++ ...+..-++. .-....+.|.|+|+|++.+.
T Consensus 196 -----------e-------------------v~e~~-----------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a 234 (432)
T PRK06793 196 -----------E-------------------VKDFI-----------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLA 234 (432)
T ss_pred -----------c-------------------HHHHH-----------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHH
Confidence 0 00000 0000000111 01234678999999999999
Q ss_pred HHc-------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 187 GLL-------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 187 aL~-------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
+.+ .++-+|++|+||+..|+. +++...+.+.-. .|.+..+.||... +++|......|.|...
T Consensus 235 ~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~----L~ERag~~~~GSiT~~ 303 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKK----LLERSGKTQKGSITGI 303 (432)
T ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchh----HHHHhccCCCcceEEE
Confidence 988 899999999999999995 566666666543 3788888888544 4444444578887543
No 441
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.29 E-value=2.9e-11 Score=123.36 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=86.8
Q ss_pred cCccCCCCCHHHHHHHHHHHHHccC--CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 167 LSWRMHKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 167 ~~~~~~~LSgGqrQRv~lAraL~~~--P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
+++...+|||||.||+-||.-+=.+ -=+.+||||+.||-+.--..+++.|+++. +.|-|+|+|.||.+.+. .||+|
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDedti~-~AD~i 552 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDEDTIR-AADHI 552 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCHHHHh-hcCEE
Confidence 5788999999999999999998654 34789999999999999999999999985 67999999999988775 69999
Q ss_pred EEE------cCCEEeeecChhHHHHhhh
Q 018938 245 VYV------AHGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 245 ~~l------~~G~i~~~g~~~~~~~~~~ 266 (348)
+-| +.|+|++.|++++++..+.
T Consensus 553 IDiGPgAG~~GGeIv~~Gtp~~i~~~~~ 580 (935)
T COG0178 553 IDIGPGAGEHGGEIVAEGTPEELLANPE 580 (935)
T ss_pred EeeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence 987 4689999999999987653
No 442
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.28 E-value=4.3e-12 Score=139.69 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=68.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938 169 WRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v 244 (348)
..+..|||||+||++||++++ .+|+++||||||++||+..+..+.++|..+++ +.+||||||++.++ .+||++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhhhH
Confidence 457899999999999999984 67799999999999999999999999998853 47899999999987 579998
Q ss_pred EEEc
Q 018938 245 VYVA 248 (348)
Q Consensus 245 ~~l~ 248 (348)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7553
No 443
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.27 E-value=5.6e-11 Score=102.34 Aligned_cols=82 Identities=24% Similarity=0.229 Sum_probs=68.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+..+..|-||-=---+.+.+- +--+.|||||-++|.|.-+-.++..|+++++. |.-+||+||.+=.+.-=.-+|+-++
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred cchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEe
Confidence 346788999988777777754 55799999999999999999999999999864 8999999999877665456788887
Q ss_pred CCEE
Q 018938 249 HGKL 252 (348)
Q Consensus 249 ~G~i 252 (348)
.+.+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 7654
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.25 E-value=6.6e-11 Score=125.70 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=61.4
Q ss_pred ccCCcEEEeeccCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh---------hhCCEEEEEcCCEEeeecCh
Q 018938 189 LKPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGATIIYATHIFDGLE---------NWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 189 ~~~P~lLlLDEPtsgL-D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~---------~~~d~v~~l~~G~i~~~g~~ 258 (348)
..+|+++++|||+.+| |+..+..+.++++.+.+ .|.++|++||+++.+. ..|+++++|.+|++...+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 6799999999999999 79999999999999854 5899999999999886 57999999999998766544
Q ss_pred h
Q 018938 259 D 259 (348)
Q Consensus 259 ~ 259 (348)
+
T Consensus 729 ~ 729 (818)
T PRK13830 729 E 729 (818)
T ss_pred H
Confidence 3
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.23 E-value=4.1e-12 Score=120.53 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=94.5
Q ss_pred eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccc
Q 018938 58 FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM 137 (348)
Q Consensus 58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (348)
+++.+..|+.++|+||+|||||||+++|++++++..+.+.+.... ++... . ...+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~-----------El~~~--~-~~~~~l~-------- 194 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTR-----------EIFLP--H-PNYVHLF-------- 194 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCcc-----------ccCCC--C-CCEEEEE--------
Confidence 557788999999999999999999999999988777766553210 00000 0 0000000
Q ss_pred cchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHH
Q 018938 138 DVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 217 (348)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~ 217 (348)
... . .. . +++....-.++.+|-.+|++|++|||.+ .+++++++
T Consensus 195 ----------~~~-~---------------~~--~--~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~ 237 (308)
T TIGR02788 195 ----------YSK-G---------------GQ--G--LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIR 237 (308)
T ss_pred ----------ecC-C---------------CC--C--cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHH
Confidence 000 0 00 0 1111122356778899999999999996 35567777
Q ss_pred HHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938 218 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 262 (348)
Q Consensus 218 ~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 262 (348)
.+. ..+.+++.++|..+ +....+|+..|..|++...|.+.+..
T Consensus 238 a~~-~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 238 AVN-TGHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHh-cCCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCHHHH
Confidence 664 32335799999998 44568999999999988877777665
No 446
>PRK00064 recF recombination protein F; Reviewed
Probab=99.20 E-value=4.1e-11 Score=116.11 Aligned_cols=77 Identities=30% Similarity=0.410 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC-
Q 018938 172 HKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP- 241 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~- 241 (348)
..+|.||+|+++||++|+ .+|+|||||||+++||+..+..+++.+.++ +..++++||+.+.+..++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhhc
Confidence 579999999999999986 799999999999999999999999988653 458999999998877764
Q ss_pred -CEEEEEcCCEE
Q 018938 242 -SHIVYVAHGKL 252 (348)
Q Consensus 242 -d~v~~l~~G~i 252 (348)
++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999987
No 447
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.20 E-value=2.7e-11 Score=96.35 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=42.3
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA 103 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~ 103 (348)
..+|++++|++++|++++|+||||||||||++++. .|.+.+.|.++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 47999999999999999999999999999999986 78899988765
No 448
>PRK02224 chromosome segregation protein; Provisional
Probab=99.19 E-value=4e-11 Score=128.95 Aligned_cols=79 Identities=25% Similarity=0.238 Sum_probs=68.3
Q ss_pred cCCCCCHHHHH------HHHHHHHHccC-----C-cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEEecChhh
Q 018938 170 RMHKVSDGQRR------RVQICMGLLKP-----F-KVLLLDEITVDLDVLARADLLRFLRKECEERGA-TIIYATHIFDG 236 (348)
Q Consensus 170 ~~~~LSgGqrQ------Rv~lAraL~~~-----P-~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~-tviivtHd~~~ 236 (348)
.+..||||||+ |++||++++.+ | +++||||||++||+..+..+.++|..+.. .|. +||+||||.++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~~ 856 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDEL 856 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChHH
Confidence 36789999999 89999998863 3 67999999999999999999999999864 354 89999999999
Q ss_pred hhhhCCEEEEEcCC
Q 018938 237 LENWPSHIVYVAHG 250 (348)
Q Consensus 237 ~~~~~d~v~~l~~G 250 (348)
+. .||+++.|...
T Consensus 857 ~~-~ad~~~~~~~~ 869 (880)
T PRK02224 857 VG-AADDLVRVEKD 869 (880)
T ss_pred HH-hcCeeEEeecC
Confidence 85 69999999644
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.18 E-value=2.6e-10 Score=96.52 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEeeccCC----------CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITV----------DLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 238 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPts----------gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 238 (348)
..+.++.++++.+++...+|+++++|||++ +.|......+.+++.. .++.+.|+|+++|......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCccc
Confidence 345566678889999999999999999995 4555555666666554 4556999999999876543
No 450
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.17 E-value=4.5e-11 Score=131.77 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=68.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938 170 RMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 245 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~ 245 (348)
++..||||||++++||++|+. +|+++|||||+++||+..+..+.++|.++.+ +.++|++||+...+ .+||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-HhcceeE
Confidence 467899999999999999984 7899999999999999999999999998753 57899999998766 6899998
Q ss_pred EEcC
Q 018938 246 YVAH 249 (348)
Q Consensus 246 ~l~~ 249 (348)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7653
No 451
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.17 E-value=3.5e-10 Score=103.06 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHHcc--CCcEEEeeccCCC---CCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh-------hhh
Q 018938 172 HKVSDGQRRRVQICMGLLK--PFKVLLLDEITVD---LDVLARADLLRFLRKECEERGATIIYATHIFDG-------LEN 239 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~--~P~lLlLDEPtsg---LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~-------~~~ 239 (348)
...|.++.+.+..+..++. +|+++++||||+. +|......+++.++.+.+ .|.|+++++|+..+ +..
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~ 177 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRS 177 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHh
Confidence 3457788999999999987 9999999999964 555555566566666554 58999999998765 344
Q ss_pred hCCEEEEEc
Q 018938 240 WPSHIVYVA 248 (348)
Q Consensus 240 ~~d~v~~l~ 248 (348)
++|-++.|+
T Consensus 178 l~DgvI~L~ 186 (234)
T PRK06067 178 ICDVYLKLR 186 (234)
T ss_pred heEEEEEEE
Confidence 555555554
No 452
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.11 E-value=6.5e-11 Score=116.07 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=46.8
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccc
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFH 105 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~ 105 (348)
.+|++|||++++||+++|+|||||||||||+ +|+..|++| +|.++|..+..
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 5899999999999999999999999999999 788888888 79999987654
No 453
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.99 E-value=2.4e-09 Score=97.83 Aligned_cols=49 Identities=24% Similarity=0.400 Sum_probs=42.2
Q ss_pred HHccCCcEEEeeccCCC------CCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938 187 GLLKPFKVLLLDEITVD------LDVLARADLLRFLRKECEERGATIIYATHIFDG 236 (348)
Q Consensus 187 aL~~~P~lLlLDEPtsg------LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 236 (348)
+...+|+++|+| |+++ +|+.....+++.|.+++++.|+|||+++|....
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 346899999999 7764 799999999999999988889999999998643
No 454
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.99 E-value=8.2e-09 Score=101.94 Aligned_cols=186 Identities=19% Similarity=0.237 Sum_probs=107.0
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchh-hhhhhhhc
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE-WRREVAFA 129 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 129 (348)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.+.+...|.....-..+.. ...+.. +.+.+.+.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~----~~~~~~~l~~tvvv~ 224 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIE----HDLGEEGLKRSVVVV 224 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHH----HHhcccccceEEEEE
Confidence 36799999 9999999999999999999999999999988777655554432100000000 000000 00000110
Q ss_pred CCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCH-HHHHHHHHHHHHccCCcEEEeecc--CCCCCH
Q 018938 130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSD-GQRRRVQICMGLLKPFKVLLLDEI--TVDLDV 206 (348)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg-GqrQRv~lAraL~~~P~lLlLDEP--tsgLD~ 206 (348)
.... ......+.... ..-...+.+...|.+.--...+|+- -|-+| .|+ +.+.|| +.|+||
T Consensus 225 ~~~d----~~p~~r~~~~~---~a~t~AE~frd~G~~Vll~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gypp 287 (440)
T TIGR01026 225 ATSD----QSPLLRLKGAY---VATAIAEYFRDQGKDVLLLMDSVTRFAMAQR-EIG---------LAAGEPPATKGYTP 287 (440)
T ss_pred ECCC----CCHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEeChHHHHHHHH-HHH---------HhcCCCCcccccCh
Confidence 0000 00011111000 0011223332223221111233332 22222 122 445675 569999
Q ss_pred HHHHHHHHHHHHHHHhcCc-------EEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 207 LARADLLRFLRKECEERGA-------TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 207 ~~~~~l~~~l~~l~~~~g~-------tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
.....+.+++.+... .+. ||++.+||+ .+.+||++..+.+|+|+.+....+.
T Consensus 288 ~~~~~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~--~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 288 SVFSTLPRLLERAGA-SGKGSITAFYTVLVEGDDM--NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hHHHHHHHHHHHhcc-CCCCeeeEEEEEEccCcCC--CcchhhhhccccceEEEEecchhhC
Confidence 999999999998764 467 899999998 4668999999999999988776554
No 455
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=9.9e-10 Score=106.50 Aligned_cols=63 Identities=27% Similarity=0.443 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHHcc---------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938 172 HKVSDGQRRRVQICMGLLK---------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 238 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~---------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 238 (348)
..+|.||++++.||.+|+. +|+|||||||+++||+..+..+++.|.+. |.+|+++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence 3589999999999999999 99999999999999999999999999642 679999999988765
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.93 E-value=8.3e-11 Score=118.22 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=55.3
Q ss_pred CccCCCCCHHHHHHHHHH--HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--------h
Q 018938 168 SWRMHKVSDGQRRRVQIC--MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG--------L 237 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lA--raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--------~ 237 (348)
++....+|+|++|||.|+ .+|...|+.+ +..+..++++++.+. +.|+|+|++||+.+. +
T Consensus 110 ~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~ 178 (484)
T TIGR02655 110 ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGV 178 (484)
T ss_pred HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCc
Confidence 344578999999999999 5665655544 567888999988875 569999999999764 2
Q ss_pred -hhhCCEEEEEc
Q 018938 238 -ENWPSHIVYVA 248 (348)
Q Consensus 238 -~~~~d~v~~l~ 248 (348)
+.+||.|+.|+
T Consensus 179 ~e~laDgVI~L~ 190 (484)
T TIGR02655 179 EEFVSDNVVILR 190 (484)
T ss_pred eeEeeeeEEEEE
Confidence 67899999886
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.93 E-value=3e-08 Score=80.79 Aligned_cols=63 Identities=32% Similarity=0.245 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH-----HHHHHHHhcCcEEEEEecC
Q 018938 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-----FLRKECEERGATIIYATHI 233 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~-----~l~~l~~~~g~tviivtHd 233 (348)
....++++..+..+++|-...|.+|++||+..-.+......... .........+..+|+++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 34667888888888888888899999999999999988776654 1222333457888999985
No 458
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.93 E-value=3.9e-09 Score=112.50 Aligned_cols=69 Identities=23% Similarity=0.177 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHHcc--CCcEEEeecc---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938 172 HKVSDGQRRRVQICMGLLK--PFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH 243 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~--~P~lLlLDEP---tsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 243 (348)
..+|-=+.....++.+|-. ++.++||||| |+.+|..+ ..+.+++.+.+..+.++|++||+.+ +..++++
T Consensus 665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e-l~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE-LTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHH-HHHHhhh
Confidence 4567777777777777655 9999999999 99999544 4555666665444689999999954 4456664
No 459
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.91 E-value=3.4e-09 Score=114.26 Aligned_cols=79 Identities=23% Similarity=0.266 Sum_probs=68.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHc------cC--CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh
Q 018938 169 WRMHKVSDGQRRRVQICMGLL------KP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW 240 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~------~~--P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~ 240 (348)
+.+.+|||||+-.++||.+|+ .+ -++|||||||..||+..+..+++.|..+... +.+|+||||+-++.+ .
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~e-~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELKE-R 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHH-h
Confidence 567899999999888877764 45 6999999999999999999999999998754 899999999988775 5
Q ss_pred CCEEEEEcC
Q 018938 241 PSHIVYVAH 249 (348)
Q Consensus 241 ~d~v~~l~~ 249 (348)
+|+++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 788887754
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.89 E-value=6.4e-09 Score=92.42 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=42.6
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+|+++|..+|+++++|||. |++....+ + +.+ ..|..++.++|..+.+. .++|++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l-~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA---L-TAA-ETGHLVMSTLHTNSAAK-TIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH---H-HHH-HcCCEEEEEecCCcHHH-HHhHHHhhc
Confidence 5889999999999999996 66543333 3 233 35889999999988664 578876663
No 461
>PRK14079 recF recombination protein F; Provisional
Probab=98.86 E-value=5.1e-09 Score=101.05 Aligned_cols=78 Identities=24% Similarity=0.315 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938 172 HKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 242 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 242 (348)
.-+|+||++++.||..|+ .+|+++|||||+++||+..+..+.+.|... ..++|-.|+ ...+|+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~----~~~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTE----APPGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCC----CCCCCc
Confidence 358999999999999999 899999999999999999999999888643 124444333 456899
Q ss_pred EEEEEcCCEEeeecC
Q 018938 243 HIVYVAHGKLQLAMP 257 (348)
Q Consensus 243 ~v~~l~~G~i~~~g~ 257 (348)
+++.+.+|++.-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999998865443
No 462
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.84 E-value=3.9e-08 Score=105.18 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=55.9
Q ss_pred HHHHHccCCcEEEeeccCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh--hCCEEEEEcCCEEe
Q 018938 184 ICMGLLKPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGATIIYATHIFDGLEN--WPSHIVYVAHGKLQ 253 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgL-D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~--~~d~v~~l~~G~i~ 253 (348)
|++++..+|+++++|||+.+| |+..+..+.++++.+.+ .|.+++++||+++.+.. +++.++.....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence 677889999999999999999 79999999999998764 58899999999999875 34444444444444
No 463
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.79 E-value=9e-09 Score=114.65 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=55.2
Q ss_pred cCCCCCHHHHHHHH----HHHH--------HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938 170 RMHKVSDGQRRRVQ----ICMG--------LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 236 (348)
Q Consensus 170 ~~~~LSgGqrQRv~----lAra--------L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 236 (348)
.++.|||||||+++ +|++ +..+|++|||||||+|||+.++..++++|.++ +.++||+||.+.-
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~Wg 1318 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSEREWG 1318 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccchhc
Confidence 46889999999996 5755 55899999999999999999999999999765 7899999998753
No 464
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.75 E-value=9.5e-09 Score=90.43 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--hhhhCCEEEEEcCC
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG--LENWPSHIVYVAHG 250 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--~~~~~d~v~~l~~G 250 (348)
|+-+|..||.++..+|+.+..+| +.+||..+..+.+.+.+.. +.|.+||+.+|.+.+ +..+||++++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 88999999999999999998887 8899999999999998864 346799999999965 77889999887644
No 465
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.72 E-value=2.6e-08 Score=97.95 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=57.6
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR 101 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~ 101 (348)
..+.++.+++++.|.. +..+++.++ +|.+|++++|+||||||||||+++|+++..|+.|.+.+.|+
T Consensus 136 ~p~~~~r~~v~~~l~T--------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGe 201 (450)
T PRK06002 136 APPAMTRARVETGLRT--------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGE 201 (450)
T ss_pred CCCCeEeecceEEcCC--------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeeccc
Confidence 3457899999999963 467999996 99999999999999999999999999999998888777653
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.70 E-value=1.1e-08 Score=90.63 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=64.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF 146 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (348)
++||+||||||||||.++|++++ ..+.+.+.+.+.+.... ... ......... ...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~----~~~-----~~~~~~~~~-~~~~------------ 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDL----SHE-----ELEERKNNN-YDHP------------ 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEeccccccc----ccc-----cHHHhccCC-CCCC------------
Confidence 58999999999999999999976 34445444433211000 000 000000000 0000
Q ss_pred ccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCH
Q 018938 147 GVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 206 (348)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~ 206 (348)
...+.+...+.+..+... ...+..++|.|++++..+ .+.+|+++|+|.|+.+.++
T Consensus 57 --~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 57 --DAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --CcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 001222333444444332 345667889998877655 5788999999999999987
No 467
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.68 E-value=6.2e-08 Score=87.07 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938 171 MHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 237 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 237 (348)
...+|.|++|.+.|+.+|...+ .++++|||-++|.|..+..++++|.+..+ .+.-||++||....+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence 4567999999999998888766 89999999999999999999999988754 578999999998764
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.64 E-value=1.7e-08 Score=88.83 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=41.1
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcC
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLG 100 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G 100 (348)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++.|.+.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 44556788999999999999999999999999999988888887754
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.61 E-value=2.7e-07 Score=83.63 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=36.6
Q ss_pred CCcEEEeeccCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEecChh--------hhhhhCCEEEEEc
Q 018938 191 PFKVLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA 248 (348)
Q Consensus 191 ~P~lLlLDEPtsgL--D~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------~~~~~~d~v~~l~ 248 (348)
+|+++++|-|+.-+ ++.....+...|.++.++.|+|+|+++|... .++.+||.|+.|+
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 35566666554432 3333344444555555678999999999643 3566788888876
No 470
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.59 E-value=4.5e-07 Score=90.38 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=46.2
Q ss_pred cCCcEEEeeccCCCC---------CHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--------hhhhCCEEEEEcCCE
Q 018938 190 KPFKVLLLDEITVDL---------DVLARADLLRFLRKECEERGATIIYATHIFDG--------LENWPSHIVYVAHGK 251 (348)
Q Consensus 190 ~~P~lLlLDEPtsgL---------D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--------~~~~~d~v~~l~~G~ 251 (348)
.+|+++++|.-++=. +....+++...|.+++++.|.|+|+++|.... ++.+||.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 589999999765421 12334556667778888899999999997654 678899999998654
No 471
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.54 E-value=8.4e-07 Score=80.97 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=37.4
Q ss_pred ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEecChhhhhh
Q 018938 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATHIFDGLEN 239 (348)
Q Consensus 189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-~g~tviivtHd~~~~~~ 239 (348)
+.+..++|+||+..|=++.....+...+.+...+ .+..+|++||+.+....
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 4567899999999999999988876555554444 58899999999987543
No 472
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.53 E-value=5e-07 Score=80.33 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=25.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
++|++++|+||||||||||+++|++.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999975
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.53 E-value=3.5e-07 Score=101.20 Aligned_cols=146 Identities=21% Similarity=0.218 Sum_probs=79.0
Q ss_pred eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-cCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc
Q 018938 58 FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH-MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ 136 (348)
Q Consensus 58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~-~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (348)
+++..+.+++++|+|++|+|||||++.+.+.+ ...+|.+++++..+.... . .+.... +..
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~-----------------~-~~~~~~-~~~ 260 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM-----------------E-IYSSAN-PDD 260 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch-----------------h-hccccc-ccc
Confidence 56778899999999999999999999996543 234566665432110000 0 000000 000
Q ss_pred ccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH
Q 018938 137 MDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216 (348)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l 216 (348)
..... . . ......+++...++ .+..+ ++.++| |..++-+|+||+- |.. ..++.|
T Consensus 261 ~~~~~-~----l---~~~~l~~il~~~~~----~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L 314 (1153)
T PLN03210 261 YNMKL-H----L---QRAFLSEILDKKDI----KIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDAL 314 (1153)
T ss_pred cchhH-H----H---HHHHHHHHhCCCCc----ccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHH
Confidence 00000 0 0 01112223332222 22222 556655 4467778889984 332 334444
Q ss_pred HHHHH--hcCcEEEEEecChhhhhhh-CCEEEEEc
Q 018938 217 RKECE--ERGATIIYATHIFDGLENW-PSHIVYVA 248 (348)
Q Consensus 217 ~~l~~--~~g~tviivtHd~~~~~~~-~d~v~~l~ 248 (348)
..... ..|.+||++|||...+... +|+++.+.
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 43221 2478999999999988655 68877663
No 474
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.52 E-value=2.7e-06 Score=78.95 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=82.4
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccccccccccCcccccchhhhhhh-hh-
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREV-AF- 128 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 128 (348)
.+.|+.+.--+.+|+++.|.|++|+|||||+..++-......| .+.+.... .. ...+...+ ..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E----~~----------~~~~~~r~~~~~ 82 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE----EP----------VVRTARRLLGQY 82 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc----cC----------HHHHHHHHHHHH
Confidence 4678888888999999999999999999999877653222212 22221100 00 00011110 00
Q ss_pred cCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-CC---cCccCCCCCHHHHHHHHHHHHHc--cCCcEEEeeccCC
Q 018938 129 AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-ID---LSWRMHKVSDGQRRRVQICMGLL--KPFKVLLLDEITV 202 (348)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~---~~~~~~~LSgGqrQRv~lAraL~--~~P~lLlLDEPts 202 (348)
.......... ......+....+++.+. .. .......++ ...-+..++.++ .+|+++++|..+.
T Consensus 83 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~ 151 (271)
T cd01122 83 AGKRLHLPDT---------VFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSI 151 (271)
T ss_pred hCCCcccCCc---------cccccHHHHHHHHHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHH
Confidence 0000000000 00112233333333331 11 111111122 233445555444 5899999998766
Q ss_pred CCCH--------HHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938 203 DLDV--------LARADLLRFLRKECEERGATIIYATHI 233 (348)
Q Consensus 203 gLD~--------~~~~~l~~~l~~l~~~~g~tviivtHd 233 (348)
-.+. .....++..|++++++.++||++++|-
T Consensus 152 l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 152 MVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 4433 123466777888888899999999984
No 475
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.52 E-value=1.3e-06 Score=93.17 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=45.5
Q ss_pred HHccCCcEEEeeccCCCCC-HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938 187 GLLKPFKVLLLDEITVDLD-VLARADLLRFLRKECEERGATIIYATHIFDGLEN 239 (348)
Q Consensus 187 aL~~~P~lLlLDEPtsgLD-~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~ 239 (348)
.+..+|.++++|||...|| +.....+.++++.+. +.|.+++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHh
Confidence 4567999999999999999 888999999999885 568899999999988654
No 476
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.51 E-value=7.6e-07 Score=85.81 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=39.3
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 245 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~ 245 (348)
+|+++|-++|++|++||+. |+++....++. + ..|.+|+.+.|-.+-.. ..+|++
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a-~tGh~v~~T~Ha~~~~~-~~~Rl~ 240 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTA----A-ETGHLVFGTLHTNSAAQ-TIERII 240 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----H-HcCCcEEEEEcCCCHHH-HHHHHH
Confidence 4678899999999999997 88776544432 2 45899999999865543 345544
No 477
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.51 E-value=1.3e-07 Score=92.89 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=55.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR 101 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~ 101 (348)
+.++.++++..|. .+..+++++ |++.+|++++|+|+||+|||||+++|+|+..++.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~--------tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLM--------TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeC--------CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 4578888888885 247899999 999999999999999999999999999999888877666664
No 478
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.50 E-value=3e-07 Score=91.60 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=36.4
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCce
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEM 95 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~ 95 (348)
.++++.++.+..|.+++|+|||||||||++..|++.+....|.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 3566777788899999999999999999999999977666553
No 479
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.49 E-value=1.5e-06 Score=84.35 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=44.6
Q ss_pred cCCcEEEeeccCC----CCC-----HHHHHHHHHHHHHHHHhcCcEEEEEecChh--------hhhhhCCEEEEEcCC
Q 018938 190 KPFKVLLLDEITV----DLD-----VLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVAHG 250 (348)
Q Consensus 190 ~~P~lLlLDEPts----gLD-----~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------~~~~~~d~v~~l~~G 250 (348)
.+|+++++|+-.+ .+| ....+++...|.+++++.+.|+|++.|-.. .++.++|.|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 5899999999532 232 233445666777888888999999999533 367889999988754
No 480
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.49 E-value=1.5e-07 Score=67.12 Aligned_cols=36 Identities=33% Similarity=0.572 Sum_probs=29.1
Q ss_pred eeeeeeEEeC-CCEEEEECCCCCcHHHHHHHHhCCCc
Q 018938 55 INDFTLTLNA-GDRCLLVGSNGAGKTTILKIIGGKHM 90 (348)
Q Consensus 55 l~~vsl~i~~-Ge~~~liG~NGsGKSTLlk~i~Gl~~ 90 (348)
+++.++++.+ |+++.|+||||||||||+.+|.=++.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556777775 57999999999999999999876543
No 481
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.46 E-value=3e-07 Score=71.15 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=38.7
Q ss_pred CccCCCCCHHHHH-HHHHHHH------Hcc------CCcEEEeeccCCCCCHHHHHHHHHHHHH
Q 018938 168 SWRMHKVSDGQRR-RVQICMG------LLK------PFKVLLLDEITVDLDVLARADLLRFLRK 218 (348)
Q Consensus 168 ~~~~~~LSgGqrQ-Rv~lAra------L~~------~P~lLlLDEPtsgLD~~~~~~l~~~l~~ 218 (348)
.+....+||||+| .+.+|.+ +.. .|++++|||||++||+..+..++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3467899999994 4444333 223 3799999999999999999999999864
No 482
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.46 E-value=7.3e-07 Score=92.16 Aligned_cols=107 Identities=23% Similarity=0.257 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcCCCc--------eEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccc
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPE--------MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPI 135 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G--------~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (348)
....++|+||||+|||||+++|.+...+..| -+.++|.... +.. ..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~------------~d~----~~---------- 227 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR------------WDP----RE---------- 227 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc------------CCH----HH----------
Confidence 4467999999999999999999987654333 2333332110 000 00
Q ss_pred cccchHHHHHhccCC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHH
Q 018938 136 QMDVSAEKMIFGVAG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 212 (348)
Q Consensus 136 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l 212 (348)
....+++... .......+.++..++. ....+.++||| +|+||| +..||+..+..+
T Consensus 228 -----i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 228 -----VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -----HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 0000111000 0011223345566654 24567789999 999999 899999999999
Q ss_pred HHHHHH
Q 018938 213 LRFLRK 218 (348)
Q Consensus 213 ~~~l~~ 218 (348)
++.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 998864
No 483
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.43 E-value=3.9e-07 Score=86.62 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=44.1
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR 101 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~ 101 (348)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+...|.
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 46799999 999999999999999999999999999998887766655553
No 484
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.43 E-value=3.7e-07 Score=88.46 Aligned_cols=52 Identities=29% Similarity=0.407 Sum_probs=47.0
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceee-----------eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLIN-----------DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~-----------~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.+.++||++.|+. ++.+|+ |+++.|.+|+.++|+||.|||||||++.|+..+
T Consensus 130 ri~Fe~LTf~YP~--------er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 130 RVLFENLTPLYPN--------ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CeEEEEeeecCCC--------ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 5899999999973 457886 999999999999999999999999999998854
No 485
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.42 E-value=2.2e-07 Score=91.40 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=38.8
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP 93 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~ 93 (348)
+..+++++ |++.+|++++|+|+||||||||+++|+|+..++.
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv 183 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV 183 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence 46799999 9999999999999999999999999999887664
No 486
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.41 E-value=2.5e-07 Score=92.87 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=54.3
Q ss_pred EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
+.|+++.|+ ...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|.+.+.+..
T Consensus 187 ~~d~~~v~G---------q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~ 247 (506)
T PRK09862 187 QHDLSDVIG---------QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAA 247 (506)
T ss_pred ccCeEEEEC---------cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecch
Confidence 458888884 4679999999999999999999999999999999999999999988776654
No 487
>PRK08149 ATP synthase SpaL; Validated
Probab=98.37 E-value=5e-07 Score=88.70 Aligned_cols=50 Identities=24% Similarity=0.416 Sum_probs=41.9
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC---ceEEEcCe
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP---EMVKVLGR 101 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~---G~i~i~G~ 101 (348)
+..+++++ |++.+|++++|+|+||+|||||+++|++...++. |.|...|.
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ 190 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGR 190 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCc
Confidence 46799999 9999999999999999999999999999876654 44444443
No 488
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.35 E-value=6.3e-07 Score=78.70 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=27.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR 101 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~ 101 (348)
|++++|+||||||||||+++|++...+ .+.+.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~ 35 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHR 35 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCE
Confidence 789999999999999999999997543 3555444
No 489
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.31 E-value=8e-07 Score=87.69 Aligned_cols=50 Identities=18% Similarity=0.488 Sum_probs=45.4
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR 101 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~ 101 (348)
+..+++++ |++.+|++++|+|+||+|||||+++|+|...++.|.+.+.|+
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe 199 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE 199 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence 46799999 999999999999999999999999999998888887777665
No 490
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=5.6e-07 Score=78.47 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
+||+++|+|+||||||||+++|+|++.+ +.++|..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcc
Confidence 6999999999999999999999998654 4566653
No 491
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.30 E-value=6.8e-06 Score=81.87 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=44.3
Q ss_pred cCCcEEEeeccCCCCC---------HHHHHHHHHHHHHHHHhcCcEEEEEecChh--------hhhhhCCEEEEEc
Q 018938 190 KPFKVLLLDEITVDLD---------VLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA 248 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD---------~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------~~~~~~d~v~~l~ 248 (348)
.+|+++++|+.++-.. ....+++...|.+++++.|.|+|+++|-.. .++.++|.++.++
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~le 230 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYFE 230 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEEE
Confidence 5899999999875432 223445566677788888999999999432 3678899999887
No 492
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.30 E-value=8.6e-06 Score=73.56 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=43.4
Q ss_pred cCCcEEEeeccCC------CCCHHHHHHHHHHHHHHHHhcCcEEEEEecC---------hhhhhhhCCEEEEEc
Q 018938 190 KPFKVLLLDEITV------DLDVLARADLLRFLRKECEERGATIIYATHI---------FDGLENWPSHIVYVA 248 (348)
Q Consensus 190 ~~P~lLlLDEPts------gLD~~~~~~l~~~l~~l~~~~g~tviivtHd---------~~~~~~~~d~v~~l~ 248 (348)
.+++++++| |.+ +.|...+..+.++++.+. +.|.|+++++|. ...++.+||.|++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLR-ETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 468899999 544 445556777888888875 569999999995 244678899999984
No 493
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=5.1e-06 Score=68.17 Aligned_cols=56 Identities=25% Similarity=0.143 Sum_probs=42.0
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEecChh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE----ERGATIIYATHIFD 235 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~----~~g~tviivtHd~~ 235 (348)
.+......+...++.+|++||.-.. ++.....+.+.+..... ..+.++|++|++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556667777889999999998654 66667778888877643 24788999988765
No 494
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.28 E-value=1.7e-06 Score=73.06 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=40.6
Q ss_pred HHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHH-----ccCCcEEEeeccCCCCCHHHHHHHHHHHHHH
Q 018938 157 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGL-----LKPFKVLLLDEITVDLDVLARADLLRFLRKE 219 (348)
Q Consensus 157 ~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL-----~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l 219 (348)
.+.+...+.. ...+...+|++++++....... ...|+++ |+|++|..+..++++.|.++
T Consensus 103 ~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 103 LDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3444444432 2345667899988887666552 3456666 99999999999999988764
No 495
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.28 E-value=3.8e-06 Score=77.71 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=33.2
Q ss_pred CceeeeeeeEEeCCC-EEEEECCCCCcHHHHHHHHhCCCc
Q 018938 52 TPLINDFTLTLNAGD-RCLLVGSNGAGKTTILKIIGGKHM 90 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge-~~~liG~NGsGKSTLlk~i~Gl~~ 90 (348)
+.++..+++.++++. ++.|+||||+|||||++.++..+.
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 457888888887766 899999999999999999988653
No 496
>PRK13764 ATPase; Provisional
Probab=98.26 E-value=5.8e-06 Score=84.49 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=47.5
Q ss_pred HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEec---------------ChhhhhhhCCEEEEEcCCEE
Q 018938 188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH---------------IFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtH---------------d~~~~~~~~d~v~~l~~G~i 252 (348)
|..+||++++||.-. .+. ++++..+. ..|..++-+-| ++..+..+||+|+++++|+|
T Consensus 321 LR~rPD~IivGEiRd---~Et----~~~~~~l~-~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRK---TED----FKIFADMR-LAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCC---HHH----HHHHHHHH-HcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence 778999999999974 322 34443333 23777899999 99999999999999999999
Q ss_pred --eeecC
Q 018938 253 --QLAMP 257 (348)
Q Consensus 253 --~~~g~ 257 (348)
+++..
T Consensus 393 ~~v~~~~ 399 (602)
T PRK13764 393 SKVYDLE 399 (602)
T ss_pred EEEEeee
Confidence 44444
No 497
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.26 E-value=3e-06 Score=74.27 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=43.9
Q ss_pred HHHHHHcCCC---cCccCCCCCHHHHHHHH--HHHHHcc-CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh
Q 018938 157 AELIKVLDID---LSWRMHKVSDGQRRRVQ--ICMGLLK-PFKVLLLDEITVDLDVLARADLLRFLRKECEE 222 (348)
Q Consensus 157 ~~~l~~l~l~---~~~~~~~LSgGqrQRv~--lAraL~~-~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~ 222 (348)
.+.+...++. ...++..+|+|++|++. +++.+-. +++++ |+|++|..+...+++.|.++.++
T Consensus 128 ~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 128 IEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3444545543 23456778999999987 5566544 34443 99999999999999999887653
No 498
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.25 E-value=9.5e-07 Score=87.15 Aligned_cols=50 Identities=24% Similarity=0.460 Sum_probs=44.6
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR 101 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~ 101 (348)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+...|.
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 181 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGE 181 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEcc
Confidence 46799999 999999999999999999999999999998888777666554
No 499
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.25 E-value=1.2e-06 Score=86.03 Aligned_cols=51 Identities=22% Similarity=0.415 Sum_probs=44.9
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
+..+++ .+|++.+|++++|+|+||+|||||+++|++...++.|.+.+.|+.
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 456776 699999999999999999999999999999998888877777753
No 500
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.24 E-value=7.8e-06 Score=80.21 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=40.4
Q ss_pred HHHccCCcEEEeec----------cCCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhhh
Q 018938 186 MGLLKPFKVLLLDE----------ITVDLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLEN 239 (348)
Q Consensus 186 raL~~~P~lLlLDE----------PtsgLD~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~~ 239 (348)
.|....|.||++|| +.++.|...+..+.+++..+. ...+..||++||.++.+..
T Consensus 233 ~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 233 LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 34557899999999 556788888888888887653 1236679999998876644
Done!